Psyllid ID: psy12426

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610------
Protein Sequence
APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS
Secondary Structure (PSIPRED)
cccccccccccEEEEEcEEEEEEEEEcccccccEEEEEccEEEEEEEEEEcccccccccccEEEEEEEEcccccEEEEccccccccEEEEcccccccEEEEEEEEEEcccccccccccccEEEEccccccccEEEEEEcccEEccEEcccEEEcEEEEcEEEEEEEccccccEEEEcccccccEEEEEEEEEEcccccccccccccEEccccccccEEEccccccEEEEcccEEEEEEEEEEEEccEEEEEEccEEEcccccEEEEEcccccEEEEcccccccEEEEEEEEEcccEEEEEEEEEEEEEccccccccEEEEEEEccEEEEEEEccccccccccEEEEEEEEEcccccEEEcccccccEEEEcccccccEEEEEEEEEccccccccccccccEEccccccccccccccEEEEEcccEEEEEEccccccccccccEEEEEEEccccccEEEEEEEccccEEEEcccccccEEEEEEEEEccccccccccccccEEEcccccccEEccccEEEEEEcccccEEEEEEEcEEEEccccccEEEEEEEEEcccccccccEEEEEEccEEEEEEEcccccccccEEEEEEEEEEcccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEccEEEEEEEEcccccccccEEEEccccEEEEEEEccccccccEEEEEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEEEEEEcccccccccccccEEccccccccccccccccccEEEEEEEccccccccccEEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEccccccccccccEEEEccccccccccccccccEEEEcccEEEEEEEcccccccEEEEEEccEEEccccEEEEEEcccEEEEEEEcccccccEEEEEEEEccEccccccEEEEEEccccccccccEEEEEcccEEEEEEEcccccccccEEEEEEEEEcccccEEEEEEccccEEEEEEccccccEEEEEEEEEEcccccccccccccEEEEccccccccccccEEEEEcccEEEEEEcccccccccccEEEEEEEEcccccEEEEEEEccccEEEEEcccccccEEEEEEEEEEcccccccccccccEEEcccccccccccEEEEEEEccccccEEEEEEccEEEEcccccEEEEEEEEEccccccccccEEEEEcccEEEEEEcccccccccccEEEEEEEEccccccEEEEcccccccccc
Coil and Loop (DISEMBL)
aphidrrhlgdiklsagttlkfdaniigepvphvdwraggnplnlrpiwekcaqtegdtpkgkvldliegnhpiwekcaqtegdtpkgkvldliegnQYEFRVLAVnkggpgepsdptaphiarakkgkCYHLVGTLLKDSIYEQLkrsglfdqfhlcpiwekcaqtegdtpkgkvldliegnQYEFRVLAVnkggpgepsdptaphiarakkvspyinrdqlsdikvragsnfefdinvigepiptkewlcnditiiskdrfkivnddkstklkvfdskrgdsgiYTLAvknswgtdkgtakvtvldipsppegplkpsnitksscnlewraprddggtDILHYVVEKmdmetgrwvpmgdvsgtyTRAENLIEGHDYNFRVKAVNKIgeslplvcqspitakdpfgrpdrpgqptvtdwgkdhvdlewtppkkdggspisqyiiekkpkygpwekacivpanitatsvpdlkegeeyEFRVIAVnkggpgepskasapvtckprfvapvidQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSyidnvpgkpskpeatdvdkdhikikwqqpisnggsaikgYEVERrertsgrwikitpdpirtkts
Flexible Loop (DISEMBL)
aphidrrhlgdiklsagttlKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWekcaqtegdtpkGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKcaqtegdtpKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIarakkvspyinrdqlsdikVRAGSNFEFdinvigepiptkewlcNDITIIskdrfkivnddkstklkvfdskrgdsgiytlavknswgtdkgTAKVTVLdipsppegplkpsnitksscnlewraprddggTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPitakdpfgrpdrpgqptvtdwgkdhvdlewtppkkdggspiSQYIIEKKPKYGPWEKACIVPANITatsvpdlkegEEYEFRVIAVnkggpgepskasapvtckpRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSkpeatdvdkdhikikwqqpisnggsaikgyeverrertsgrwikitpdpirtkts
Low Complexity Region (SEG)
APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS
Disordered region (IsUnstruct)
********LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN*****************AKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN***********************YINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD*******************NLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPI*******************WGKDHVDLEW**********ISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN*************VTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDN*****************IKIKWQ************************WI************
Disordered Region (DISOPRED)
APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPI*****
Disordered Region (DISEMBL)
APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG*********APHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG**********PVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGK********VDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS
Disordered Region (DISPRO)
***I*RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITP********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	616	2.2.26 [Sep-21-2011]
Q23551	7158	Twitchin OS=Caenorhabditi	yes	N/A	0.853	0.073	0.370	2e-95
Q8WZ42	34350	Titin OS=Homo sapiens GN=	no	N/A	0.827	0.014	0.328	2e-65
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.827	0.014	0.331	4e-65
Q14896	1274	Myosin-binding protein C,	no	N/A	0.623	0.301	0.256	6e-32
Q90688	1272	Myosin-binding protein C,	no	N/A	0.623	0.301	0.252	4e-30
Q8N9C0	903	Immunoglobulin superfamil	no	N/A	0.449	0.306	0.310	5e-30
P56741	1274	Myosin-binding protein C,	no	N/A	0.612	0.295	0.251	5e-29
O70468	1270	Myosin-binding protein C,	no	N/A	0.623	0.302	0.245	8e-29
Q9I7U4	18141	Titin OS=Drosophila melan	no	N/A	0.535	0.018	0.285	2e-27
Q14324	1141	Myosin-binding protein C,	no	N/A	0.542	0.292	0.292	1e-26

>sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3

 Score =  350 bits (899), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 221/596 (37%), Positives = 301/596 (50%), Gaps = 70/596 (11%)

Query: 75   WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA---KKGKCY 131
            W   A+  GD     V  LI G++Y+FRV AVN  G  +P +     +A+    K GK  
Sbjct: 3114 WVPAAKVAGDKTTAVVDGLIPGHEYKFRVAAVNAEGESDPLETFGTTLAKDPFDKPGKTN 3173

Query: 132  H-LVGTLLKDSIYEQLKRSG-------------LFDQFHLCPIWEKCAQTEGDTPKGKVL 177
               +    KD +  + K                + D+F   P W   A          V 
Sbjct: 3174 APEITDWDKDHVDLEWKPPANDGGAPIEEYVVEMKDEF--SPFWNDVAHVPAGQTNATVG 3231

Query: 178  DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFD 237
            +L EG++YEFR+ A NK G G+PSD +A  +A+A+ V P I+R+ + +IKV+AG +F  +
Sbjct: 3232 NLKEGSKYEFRIRAKNKAGLGDPSD-SASAVAKARNVPPVIDRNSIQEIKVKAGQDFSLN 3290

Query: 238  INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297
            I V GEP PT  W      + S DR K+ N+D  TK  V  + R D+G Y +  +N  GT
Sbjct: 3291 IPVSGEPTPTITWTFEGTPVESDDRMKLNNEDGKTKFHVKRALRSDTGTYIIKAENENGT 3350

Query: 298  DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW 357
            D    KVTVLD PS P GPL  +NI K  C+L W+ P DDGG +I HYV+EK D  TGRW
Sbjct: 3351 DTAEVKVTVLDHPSSPRGPLDVTNIVKDGCDLAWKEPEDDGGAEISHYVIEKQDAATGRW 3410

Query: 358  VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 417
               G+   T    ++L +GH+Y FRVKAVN+ G+S PL  +  I AKDPF R D+PG P 
Sbjct: 3411 TACGESKDTNFHVDDLTQGHEYKFRVKAVNRHGDSDPLEAREAIIAKDPFDRADKPGTPE 3470

Query: 418  VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGE 477
            + DW KDH DL+WTPP  DGG+PI  Y++E +   G W  A  V A     +V  LK G+
Sbjct: 3471 IVDWDKDHADLKWTPPADDGGAPIEGYLVEMRTPSGDWVPAVTVGAGELTATVDGLKPGQ 3530

Query: 478  EYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVI--DQYALQDMTA-QEYN-------- 526
             Y+FRV A+NK G   PS  S  +  KPR +AP I  D +  Q + A Q  N        
Sbjct: 3531 TYQFRVKALNKAGESTPSDPSRTMVAKPRHLAPKINRDMFVAQRVKAGQTLNFDVNVEGE 3590

Query: 527  --PFITLLF----------------------------------KNFVLDLNEGLKSMVKL 550
              P I                                      K  ++  NE  K   ++
Sbjct: 3591 PAPKIEWFLNGSPLSSGGNTHIDNNTDNNTKLTTKSTARADSGKYKIVATNESGKDEHEV 3650

Query: 551  SY-IDNVPGKPSKP-EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWI 604
               I ++PG P  P    D+ K+ + +KW +P+ +GGS I  Y VE++E   GRW+
Sbjct: 3651 DVNILDIPGAPEGPLRHKDITKESVVLKWDEPLDDGGSPITNYVVEKQE-DGGRWV 3705

Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score =  250 bits (639), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 190/579 (32%), Positives = 271/579 (46%), Gaps = 69/579 (11%)

Query: 49    WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
             W +     G    G  L+  E N  +W K  +T     K K   L EG +YEFRV A N 
Sbjct: 23288 WNEPISDGGSRVIGYHLERKERNSILWVKLNKTPIPQTKFKTTGLEEGVEYEFRVSAENI 23347

Query: 109   GGPGEPSDPTAPHIAR---AKKGKCYHLVGTLLKDSIYEQLKR---------SGLFDQFH 156
              G G+PS  +  ++AR      G+   ++ T  ++S+  Q K+         +G   +  
Sbjct: 23348 VGIGKPSKVSECYVARDPCDPPGRPEAIIVT--RNSVTLQWKKPTYDGGSKITGYIVEKK 23405

Query: 157   LCP--IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP-GEPSDPTAPHIARAKK 213
               P   W K + T       +V  L+E ++YEFRV+A N  G   EPS+ T    AR + 
Sbjct: 23406 ELPEGRWMKASFTNIIDTHFEVTGLVEDHRYEFRVIARNAAGVFSEPSESTGAITARDEV 23465

Query: 214   VSPYINRD-QLSD-IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
               P I+ D +  D I V AG +F+ D ++ G+PIPT +W+  D  + +  R +I + D +
Sbjct: 23466 DPPRISMDPKYKDTIVVHAGESFKVDADIYGKPIPTIQWIKGDQELSNTARLEIKSTDFA 23525

Query: 272   TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEW 331
             T L V D+ R DSG Y L  KN  G    T  V VLD P PPEGP+  S +T   C L W
Sbjct: 23526 TSLSVKDAVRVDSGNYILKAKNVAGERSVTVNVKVLDRPGPPEGPVVISGVTAEKCTLAW 23585

Query: 332   RAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYTRAENLIEGHDYNFRVKAVNKIG 390
             + P  DGG+DI++Y+VE+ +     W  +  +V     +   L+EG++Y FR+ AVNK G
Sbjct: 23586 KPPLQDGGSDIINYIVERRETSRLVWTVVDANVQTLSCKVTKLLEGNEYTFRIMAVNKYG 23645

Query: 391   ESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP 450
                PL  + P+ AK+PF  PD P  P VT   KD + + W  P  DGGS I  Y++EK+ 
Sbjct: 23646 VGEPLESE-PVVAKNPFVVPDAPKAPEVTTVTKDSMIVVWERPASDGGSEILGYVLEKRD 23704

Query: 451   KYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVA 509
             K G  W +            V  L E  +YEFRV A N  G  EPS  SA          
Sbjct: 23705 KEGIRWTRCHKRLIGELRLRVTGLIENHDYEFRVSAENAAGLSEPSPPSA---------- 23754

Query: 510   PVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVD 569
                            Y      ++K                      PG P+ P+  D+ 
Sbjct: 23755 ---------------YQKACDPIYK----------------------PGPPNNPKVIDIT 23777

Query: 570   KDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITP 608
             +  + + W +PI +GG  I+GY VE+ + + G W   TP
Sbjct: 23778 RSSVFLSWSKPIYDGGCEIQGYIVEKCDVSVGEWTMCTP 23816

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score =  249 bits (636), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 192/579 (33%), Positives = 268/579 (46%), Gaps = 69/579 (11%)

Query: 49    WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
             W +     G    G  L+  E N  +W K  +T     K K   L EG +YEFRV A N 
Sbjct: 24150 WHEPVSDGGSKVIGYHLERKERNSILWVKLNKTPIPQTKFKTTGLEEGIEYEFRVSAENI 24209

Query: 109   GGPGEPSDPT---APHIARAKKGKCYHLVGTLLKDSIYEQLKR---------SGLFDQFH 156
              G G+PS P+   A H      G+   ++ T  ++S+  Q K+         +G   +  
Sbjct: 24210 VGIGKPSKPSECYAAHDPCDPPGRPEAIIVT--RNSVTLQWKKPTYDGGSKITGYIVEKK 24267

Query: 157   LCP--IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP-GEPSDPTAPHIARAKK 213
               P   W K + T     + +V  L+E ++YEFRV+A N  G   EPS+ T    AR + 
Sbjct: 24268 ELPDGRWMKASFTNIIDTQFEVTGLLEDHRYEFRVIARNAAGVFSEPSESTGAITARDEV 24327

Query: 214   VSPYINRD--QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
               P I+ D      + V+AG +F+ D ++ G+PIPT +W+  D  + S  R +I + D +
Sbjct: 24328 EPPRISMDPKYRDTVVVQAGESFKIDADIYGKPIPTTQWVKGDQELSSTARLEIKSTDFA 24387

Query: 272   TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEW 331
             T L V D+ R DSG Y L  KN  G    T  V VLD P PPEGP+  S +T   C L W
Sbjct: 24388 TSLSVKDAVRVDSGNYILKAKNVAGEKSVTINVKVLDRPGPPEGPVAISGVTAEKCTLAW 24447

Query: 332   RAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYTRAENLIEGHDYNFRVKAVNKIG 390
             + P  DGG+DI +Y+VE+ +     W  +  +V     +   L+EG++Y FR+ AVNK G
Sbjct: 24448 KPPLQDGGSDITNYIVERRETSRLVWTLVDANVQTLSCKVLKLLEGNEYIFRIMAVNKYG 24507

Query: 391   ESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP 450
                PL  +S I AK+PF  PD P  P VT   KD + + W  P  DGGS I  Y++EK+ 
Sbjct: 24508 VGEPLESESLI-AKNPFVVPDAPKAPEVTAVTKDSMIVVWERPASDGGSEILGYVLEKRD 24566

Query: 451   KYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVA 509
             K G  W +            V  L E   YEFRV A N  G  EPS  SA          
Sbjct: 24567 KEGIRWTRCHKRLIGELRLRVTGLLENHNYEFRVSAENAAGLSEPSPPSA---------- 24616

Query: 510   PVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVD 569
                            Y      ++K                      PG P+ P+  DV 
Sbjct: 24617 ---------------YQKACDPIYK----------------------PGPPNNPKVMDVT 24639

Query: 570   KDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITP 608
             +  + + W +PI +GG  I+GY VE+ + + G W   TP
Sbjct: 24640 RSSVFLSWTKPIYDGGCEIQGYIVEKCDVSVGEWTMCTP 24678

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q14896|MYPC3_HUMAN Myosin-binding protein C, cardiac-type OS=Homo sapiens GN=MYBPC3 PE=1 SV=4

 Score =  139 bits (351), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 185/468 (39%), Gaps = 84/468 (17%)

Query: 226  IKVRAGSNFEFDINVIGEPIPT----------------------------KEWLCNDITI 257
            I V AG+    D+ + G+P PT                             EW+ +   +
Sbjct: 659  IVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLL 718

Query: 258  I-SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
              ++ R ++      +   V  +++ D G+YT+ VKN  G D+    V V+D+P  P  P
Sbjct: 719  CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVIDVPDAPAAP 778

Query: 317  LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTYTRAENLI 374
             K SN+ + SC ++W  P  DGG  IL Y++E+   ++ RW+ +    +      A  +I
Sbjct: 779  -KISNVGEDSCTVQWEPPAYDGGQPILGYILERKKKKSYRWMRLNFDLIQELSHEARRMI 837

Query: 375  EGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK 434
            EG  Y  RV AVN IG S P     P     P G P  P    V D     V L+W PP+
Sbjct: 838  EGVVYEMRVYAVNAIGMSRPSPASQPFM---PIGPPSEPTHLAVEDVSDTTVSLKWRPPE 894

Query: 435  KDGGSPISQYIIEKKPK-YGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE 493
            + G   +  Y +E  P+    W  A       T+  V DL  G    FRV A N  GPG 
Sbjct: 895  RVGAGGLDGYSVEYCPEGCSEWVAALQGLTEHTSILVKDLPTGARLLFRVRAHNMAGPGA 954

Query: 494  PSKASAPVTC-----KPRFVAPVIDQYALQDMTAQEYNPFI------------------- 529
            P   + PVT      +PR   P   +  +Q    +  N  I                   
Sbjct: 955  PVTTTEPVTVQEILQRPRLQLPRHLRQTIQKKVGEPVNLLIPFQGKPRPQVTWTKEGQPL 1014

Query: 530  -------------TLLFKNFVLDLNEGLKSMV--------KLSYIDNVPGKPSKPE---A 565
                         T+LF      ++ G   +         K + +  V  KPS P+    
Sbjct: 1015 AGEEVSIRNSPTDTILFIRAARRVHSGTYQVTVRIENMEDKATLVLQVVDKPSPPQDLRV 1074

Query: 566  TDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
            TD    ++ ++W+ P   G + + GY V++ ++ +  W  +     RT
Sbjct: 1075 TDAWGLNVALEWKPPQDVGNTELWGYTVQKADKKTMEWFTVLEHYRRT 1122

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Homo sapiens (taxid: 9606)

>sp|Q90688|MYPC3_CHICK Myosin-binding protein C, cardiac-type OS=Gallus gallus GN=MYBPC3 PE=1 SV=3

 Score =  133 bits (335), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 118/467 (25%), Positives = 185/467 (39%), Gaps = 83/467 (17%)

Query: 226  IKVRAGSNFEFDINVIGEPIPTKEW--------------------------LCNDITII- 258
            I V AG+    D+ + G+P PT  W                          L  D  ++ 
Sbjct: 658  IVVVAGNKLRLDVPISGDPTPTVIWQKVNKKGELVHQSNEDSLTPSENSSDLSTDSKLLF 717

Query: 259  -SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPL 317
             S+ R ++   +      +  +++ D G+Y + VKN  G DK    V V+D+P PPE P 
Sbjct: 718  ESEGRVRVEKHEDHCVFIIEGAEKEDEGVYRVIVKNPVGEDKADITVKVIDVPDPPEAP- 776

Query: 318  KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGTYT-RAENLIE 375
            K SNI +  C ++W+ P  DGG  +L Y++E+   ++ RW+ +  D+    T  A+ +IE
Sbjct: 777  KISNIGEDYCTVQWQPPTYDGGQPVLGYILERKKKKSYRWMRLNFDLLKELTYEAKRMIE 836

Query: 376  GHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKK 435
            G  Y  R+ AVN IG S P     P     P   P  P   TV D     V L+W PP++
Sbjct: 837  GVVYEMRIYAVNSIGMSRPSPASQPFM---PIAPPSEPTHFTVEDVSDTTVALKWRPPER 893

Query: 436  DGGSPISQYIIEK-KPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEP 494
             G   +  YI+E  K     W  A       T+  + DL  G++  FRV A+N  G    
Sbjct: 894  IGAGGLDGYIVEYCKDGSAEWTPALPGLTERTSALIKDLVTGDKLYFRVKAINLAGESGA 953

Query: 495  SKASAPVTC-----KPRFVAPVIDQYALQDMTAQEYNPFI-------------------- 529
            +    PVT      +P+   P   +  L     +  N  I                    
Sbjct: 954  AIIKEPVTVQEIMQRPKICVPRHLRQTLVKKVGETINIMIPFQGKPRPKISWMKDGQTLD 1013

Query: 530  ------------TLLF-----------KNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEAT 566
                        T+LF               L +     ++     I + PG P   +  
Sbjct: 1014 SKDVGIRNSSTDTILFIRKAELHHSGAYEVTLQIENMTDTVAITIQIIDKPGPPQNIKLA 1073

Query: 567  DVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
            DV   ++ ++W  P  +G + I GY V++ ++ +  W  +     RT
Sbjct: 1074 DVWGFNVALEWTPPQDDGNAQILGYTVQKADKKTMEWYTVYDHYRRT 1120

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle A bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role. May be involved in the early phase of myofibrillogenesis.

Gallus gallus (taxid: 9031)

>sp|Q8N9C0|IGS22_HUMAN Immunoglobulin superfamily member 22 OS=Homo sapiens GN=IGSF22 PE=1 SV=2

 Score =  133 bits (334), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 137/283 (48%), Gaps = 6/283 (2%)

Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 285
           I V+ G      +   G+P+P   W  + + +  ++R  +   +    L + +  R DSG
Sbjct: 617 ITVKVGHTAHIKVPFRGKPLPKVTWYKDGMEVTEEERVSMERGEDQALLTISNCVREDSG 676

Query: 286 IYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHY 345
           +  L +KN  G+   T  ++VL+ P     P + +++TK +  + W AP  DGG  +L Y
Sbjct: 677 LILLKLKNDHGSATATLHLSVLEPPGFASQP-QVTDVTKEAVTITWNAPTQDGGAPVLGY 735

Query: 346 VVEKMDMETGRWVPMGD--VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITA 403
           +VE+    +  WVP+    + GT    + L+E  +Y FRV AVNK G   P V  S + A
Sbjct: 736 IVERRKKGSNLWVPVNKDPIQGTKCTVDGLLEDTEYEFRVIAVNKAGPGQPSVPSSSVVA 795

Query: 404 KDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKACIVP 462
           KDP   P       V+D     + L W  P +  G P S YI+E + +    W K   +P
Sbjct: 796 KDPVKPPGLVQDLHVSDSSNSSISLAWREPAE--GDPPSGYILEMRAEDTKEWSKCTKIP 853

Query: 463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            + T  +V  L E ++Y FR+ AVN+ G GEP +    V   P
Sbjct: 854 ISGTCYTVGGLIERQKYFFRIRAVNEAGVGEPVELDKGVRAMP 896

Homo sapiens (taxid: 9606)

>sp|P56741|MYPC_RAT Myosin-binding protein C, cardiac-type OS=Rattus norvegicus GN=Mybpc3 PE=2 SV=2

 Score =  129 bits (325), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 183/461 (39%), Gaps = 84/461 (18%)

Query: 226  IKVRAGSNFEFDINVIGEPIPT----------------------------KEWLCNDITI 257
            I V AG+    D+ + G+P PT                            +EW+ +   +
Sbjct: 659  IVVVAGNKLRLDVPISGDPAPTVIWQKTITQGKKASAGPPPGAPEDAGADEEWVFDKKLL 718

Query: 258  I-SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
              ++ R ++      +   V  +++ D G+YT+ VKN  G D+    V V+D+P  P  P
Sbjct: 719  CETEGRVRVETTKDRSVFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVIDVPDAPAAP 778

Query: 317  LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGTYTR-AENLI 374
             K SN+ + SC ++W  P  DGG  +L Y++E+   ++ RW+ +  D+    +  A  +I
Sbjct: 779  -KISNVGEDSCIVQWEPPAYDGGQPVLGYILERKKKKSYRWMRLNFDLLRELSHEARRMI 837

Query: 375  EGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK 434
            EG  Y  RV AVN +G S P     P     P G P  P   TV D     V L+W PP+
Sbjct: 838  EGVAYEMRVYAVNAVGMSRPSPASQPFM---PIGPPGEPTHLTVEDVSDTTVSLKWRPPE 894

Query: 435  KDGGSPISQYIIEK-KPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE 493
            + G   +  Y +E  +     W  A       T+  V DL  G    FRV A N  GPG 
Sbjct: 895  RVGAGGLDGYSVEYCQEGCSEWVTALQGLTERTSLLVKDLPTGARLLFRVRAHNVAGPGG 954

Query: 494  PSKASAPVTC-----KPRFVAPVIDQYALQDMTAQEYNPFI------------------- 529
            P     PVT      +PR   P   +  +Q    +  N  I                   
Sbjct: 955  PIITKEPVTVQEILQRPRLQLPRHLRQTIQKKVGEPVNLLIPFQGKPRPQVTWTKEGQPL 1014

Query: 530  -------------TLLFKNFVLDLNEGLKSMV--------KLSYIDNVPGKPSKPEATDV 568
                         T+LF       + G   +         K + +  +  KPS P    V
Sbjct: 1015 AGEEVSIRNSPTDTILFIRAAHRTHSGTYQVTVRIENMEDKATLVLQIVDKPSPPLDIRV 1074

Query: 569  DKD---HIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKI 606
             +     + ++W+ P  +G + I GY V++ ++ +  W  +
Sbjct: 1075 VETWGFSVALEWKPPQDDGNTEIWGYTVQKADKKTMEWFTV 1115

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Rattus norvegicus (taxid: 10116)

>sp|O70468|MYPC3_MOUSE Myosin-binding protein C, cardiac-type OS=Mus musculus GN=Mybpc3 PE=1 SV=1

 Score =  129 bits (323), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 115/468 (24%), Positives = 184/468 (39%), Gaps = 84/468 (17%)

Query: 226  IKVRAGSNFEFDINVIGEPIPT----------------------------KEWLCNDITI 257
            I V  G+    D+ + G+P PT                            +EW+ +   +
Sbjct: 655  IVVVTGNKLRLDVPISGDPAPTVVWQKTVTQGKKASAGPHPDAPEDAGADEEWVFDKKLL 714

Query: 258  I-SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
              ++ R ++      +   V  +++ D G+YT+ VKN  G D+    V V+D+P  P  P
Sbjct: 715  CETEGRVRVETTKDRSVFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVIDVPDAPAAP 774

Query: 317  LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGTYTR-AENLI 374
             K SN+ + SC ++W  P  DGG  +L Y++E+   ++ RW+ +  D+    +  A  +I
Sbjct: 775  -KISNVGEDSCTVQWEPPAYDGGQPVLGYILERKKKKSYRWMRLNFDLLRELSHEARRMI 833

Query: 375  EGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK 434
            EG  Y  RV AVN +G S P     P     P G P  P    V D     V L+W PP+
Sbjct: 834  EGVAYEMRVYAVNAVGMSRPSPASQPFM---PIGPPGEPTHLAVEDVSDTTVSLKWRPPE 890

Query: 435  KDGGSPISQYIIEK-KPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE 493
            + G   +  Y +E  +     W  A        +  V DL  G    FRV A N  GPG 
Sbjct: 891  RVGAGGLDGYSVEYCQEGCSEWTPALQGLTERRSMLVKDLPTGARLLFRVRAHNVAGPGG 950

Query: 494  PSKASAPVTC-----KPRFVAPVIDQYALQDMTAQEYNPFI------------------- 529
            P     PVT      +PR   P   +  +Q    +  N  I                   
Sbjct: 951  PIVTKEPVTVQEILQRPRLQLPRHLRQTIQKKVGEPVNLLIPFQGKPRPQVTWTKEGQPL 1010

Query: 530  -------------TLLFKNFVLDLNEGLKSMV--------KLSYIDNVPGKPSKPEATDV 568
                         T+LF       + G   +         K + I  +  KPS P+   +
Sbjct: 1011 AGEEVSIRNSPTDTILFIRAARRTHSGTYQVTVRIENMEDKATLILQIVDKPSPPQDIRI 1070

Query: 569  DKD---HIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
             +    ++ ++W+ P  +G + I GY V++ ++ +  W  +     RT
Sbjct: 1071 VETWGFNVALEWKPPQDDGNTEIWGYTVQKADKKTMEWFTVLEHYRRT 1118

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Mus musculus (taxid: 10090)

>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3

 Score =  124 bits (311), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 153/385 (39%), Gaps = 55/385 (14%)

Query: 227   KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGI 286
             K+R GS       V G P PT  W    I   +     I   + ++   V    R  SG 
Sbjct: 17575 KLRTGSILTIPATVRGYPQPTVTWHKETIEQKTTKSVTIETTETTSTYTVKKVTREQSGK 17634

Query: 287   YTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYV 346
             Y +   N  GT      V V+D PS P+  L+  +I K S  LEW  P DDGG DI  Y 
Sbjct: 17635 YKVTATNESGTTYVECTVQVIDKPSRPQS-LEIKDIKKDSIVLEWTPPVDDGGLDIEKYT 17693

Query: 347   VEKMDMETGRWVPMGDVS---GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITA 403
             +EK D++   W+ + D +    +Y   + L     Y FRV A N IGES P     P+T 
Sbjct: 17694 LEKCDVQNNVWMKVSDFNKDIKSYA-VQKLSMNAQYMFRVVAANPIGESEPTES-DPVTI 17751

Query: 404   KDPFGRPDRPGQP-TVTDWGKDHVDLEWTPPKKDGGSPISQYIIE-KKPKYGPWEKACIV 461
                F +P  P  P TV+       +L W P + DGGS I +YI+E ++     +    + 
Sbjct: 17752 TKKFEKPSPPRGPTTVSGMNDTSFNLAWEPSETDGGSKIIEYIVEIREETETTYRSVGVT 17811

Query: 462   PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMT 521
                +T   V  +   + Y FR+ A N+ G  E  + +  +    R + P           
Sbjct: 17812 LGTVTNIHVEKVVRNKGYFFRIYARNEVGTSEAFETTEKIVLG-RKITP----------- 17859

Query: 522   AQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPI 581
                                                P  P    A DV    + + W+ P 
Sbjct: 17860 -----------------------------------PSPPQNLRAPDVTSRSVTLDWEVPA 17884

Query: 582   SNGGSAIKGYEVERRERTSGRWIKI 606
              NGGS I GY VE+R  TS  W K+
Sbjct: 17885 RNGGSEITGYCVEKRSSTSTNWTKV 17909

Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Drosophila melanogaster (taxid: 7227)

>sp|Q14324|MYPC2_HUMAN Myosin-binding protein C, fast-type OS=Homo sapiens GN=MYBPC2 PE=1 SV=2

 Score =  122 bits (305), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 157/359 (43%), Gaps = 25/359 (6%)

Query: 154 QFHLCPIWEKCAQTEGD---TPKGKVLDL-IEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 209
           +FH   I +   + EGD    P G  L L  + N  E +V  V K       +P   H+ 
Sbjct: 491 RFHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVEYVPK------QEPPKIHLD 544

Query: 210 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND-ITIISKDRFKIVND 268
            + K S        + I V AG+    D+++ GEP P   WL  D +   ++ R +I   
Sbjct: 545 CSGKTSE-------NAIVVVAGNKLRLDVSITGEPPPVATWLKGDEVFTTTEGRTRIEKR 597

Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCN 328
              +   +  ++R D G YT+ V N  G D  +  + V+D+P PPE  ++ +++ +    
Sbjct: 598 VDCSSFVIESAQREDEGRYTIKVTNPVGEDVASIFLQVVDVPDPPEA-VRITSVGEDWAI 656

Query: 329 LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAEN--LIEGHDYNFRVKAV 386
           L W  P  DGG  +  Y+VE+    + RW+ +     T T  E+  +IEG  Y  RV AV
Sbjct: 657 LVWEPPMYDGGKPVTGYLVERKKKGSQRWMKLNFEVFTETTYESTKMIEGILYEMRVFAV 716

Query: 387 NKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYII 446
           N IG S P +   P     P      P    V D       L+W PP + G   I  Y++
Sbjct: 717 NAIGVSQPSMNTKPFM---PIAPTSEPLHLIVEDVTDTTTTLKWRPPNRIGAGGIDGYLV 773

Query: 447 EKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
           E   +    W  A   P      +V +L  G    FRV+ VN  G  EP+  + PVT +
Sbjct: 774 EYCLEGSEEWVPANTEPVERCGFTVKNLPTGARILFRVVGVNIAGRSEPATLAQPVTIR 832

Thick filament-associated protein located in the crossbridge region of vertebrate striated muscle a bands. In vitro it binds MHC, F-actin and native thin filaments, and modifies the activity of actin-activated myosin ATPase. It may modulate muscle contraction or may play a more structural role.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	616
357609022	7481	hypothetical protein KGM_13458 [Danaus p	0.925	0.076	0.446	1e-139
328710146	8645	PREDICTED: twitchin-like [Acyrthosiphon	0.857	0.061	0.465	1e-139
189233817	8838	PREDICTED: similar to CG32019-PA [Tribol	0.923	0.064	0.454	1e-139
270014673	8877	hypothetical protein TcasGA2_TC004721 [T	0.923	0.064	0.454	1e-139
307200525	5935	Titin [Harpegnathos saltator]	0.910	0.094	0.422	1e-136
350413804	8700	PREDICTED: twitchin-like [Bombus impatie	0.853	0.060	0.452	1e-133
340710318	8715	PREDICTED: twitchin-like [Bombus terrest	0.853	0.060	0.450	1e-133
380026625	8679	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.852	0.060	0.449	1e-133
195172580	8120	GL18185 [Drosophila persimilis] gi|19411	0.866	0.065	0.443	1e-133
328789682	8619	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.852	0.060	0.444	1e-133

>gi|357609022|gb|EHJ66254.1| hypothetical protein KGM_13458 [Danaus plexippus]

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 286/641 (44%), Positives = 371/641 (57%), Gaps = 71/641 (11%)

Query: 28   GEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK 87
            G P+   D  A G  L+    W   A   G   +  V++ ++     W +  +T+G    
Sbjct: 3680 GGPLKVSDVHANGAKLS----WNPPADDGGQPIEKYVVERMDEATGRWVQAGETDGPQTN 3735

Query: 88   GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK-GKCYHLVGT-----LLKDS 141
              V  L  G++Y+FRV AVN+ G  EP   T PH   AK         GT       KD 
Sbjct: 3736 LAVDGLTPGHKYKFRVRAVNRQGKSEPL--TTPHATEAKNPFDVASKPGTPRIKDFDKDF 3793

Query: 142  IYEQLKRSG-----------LFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 190
            +  +  R             +  +    P WE+CAQ EGD   GKV DLIEGN YEFRV 
Sbjct: 3794 VELEWTRPDSDGGAPITGYVIEKKDRFAPDWEECAQIEGDVTSGKVPDLIEGNTYEFRVR 3853

Query: 191  AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
            AVNK G G PSD TAPH+AR K ++P I+R+ + DIK++ G NFE D+ V GEP PTKEW
Sbjct: 3854 AVNKAGKGVPSDSTAPHVARPKNLAPKIDRNFMFDIKIKVGQNFELDVPVAGEPTPTKEW 3913

Query: 251  LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
            L  +  +++ DR K+VND  STK++V D+KR D+G YTL  KN  GTD  T K+ V+D+P
Sbjct: 3914 LHGENMVLNTDRIKVVNDAHSTKIRVIDAKRADTGTYTLKAKNINGTDSATVKIVVMDVP 3973

Query: 311  SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
             PPEGPL+  +ITKS C L WR P+DDGG++I HYVVEKMD E  RWVP G+V G   R 
Sbjct: 3974 LPPEGPLRVDDITKSGCTLRWRPPKDDGGSEITHYVVEKMDQENLRWVPAGEVQGCNIRI 4033

Query: 371  ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEW 430
            ++LIEGHDYNFRV+AVN+ GES PLV   PITAKDP+G PD+PG P V DW KDH+D+EW
Sbjct: 4034 DHLIEGHDYNFRVRAVNRHGESQPLVGSEPITAKDPYGTPDKPGTPVVKDWDKDHMDIEW 4093

Query: 431  TPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG 490
             PPKKDGGSPI+ Y+IE + KYGPW+ A  VP N T  ++P L+EGEEYEFRVIAVNK G
Sbjct: 4094 VPPKKDGGSPITGYVIEARKKYGPWQVAATVPGNQTTATIPGLQEGEEYEFRVIAVNKAG 4153

Query: 491  PGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQ-----------EYNPF----------- 528
             GEPS AS P   K RF AP  D+  L D T +           E +P            
Sbjct: 4154 NGEPSDASTPQVAKARFCAPSFDKMLLADKTVKAGQRIQYEIPIEASPKPTAEWQINGKL 4213

Query: 529  --------ITLLFKNFVLDLNEGLKS---MVKLSYIDN-----------VPGKPSKPE-- 564
                    I +L    +LD+   +++   + KL+  ++           V  KPS+PE  
Sbjct: 4214 VHPSDRIDIQVLHNRVILDIPFSVRADGGIYKLTLKNDLGVCSASAQVTVLDKPSRPEKP 4273

Query: 565  --ATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
               +DV K+   + W+ P+ +GGS I  Y +E+ + + G W
Sbjct: 4274 LVVSDVTKESCSLSWKVPLDDGGSPILHYVIEKMDLSRGTW 4314

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710146|ref|XP_003244179.1| PREDICTED: twitchin-like [Acyrthosiphon pisum]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/593 (46%), Positives = 353/593 (59%), Gaps = 65/593 (10%)

Query: 75   WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLV 134
            W    +T+G      V DLI G++Y+FRV AVNK G  +P        A+          
Sbjct: 4827 WVPAGETDGPVTNFDVTDLIPGHKYKFRVKAVNKQGKSDPLTANQSIEAKNPFDTPSRPS 4886

Query: 135  GTLLKD--SIYEQL-----KRSG--------LFDQFHLCPIWEKCAQTEGDTPKGKVLDL 179
              ++KD  S + +L     K  G        +  +    P W K A+  GD   G V  L
Sbjct: 4887 NPIIKDFDSDFVELGWDRPKIDGGSPITGYIIEKKDKFSPTWVKAAEVIGDVNSGIVPGL 4946

Query: 180  IEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDIN 239
             EGNQYEFRV AVNK GPGE S+PT PH+AR KK++P+I+R+ LSDIKVRAG+ FEFD+ 
Sbjct: 4947 TEGNQYEFRVRAVNKAGPGEASEPTLPHLARLKKLAPHIDRNTLSDIKVRAGNMFEFDVK 5006

Query: 240  VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 299
            V GEP PTKEW      ++  +   I+N D STKLKV D+KR D GIY L  KN  G DK
Sbjct: 5007 VSGEPPPTKEWSLRGDVLVKTESINIINQDHSTKLKVIDAKRSDDGIYYLVAKNIHGMDK 5066

Query: 300  GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 359
               KVTV+D+P PPEGPL P+++TKSSC L+W  P+DDGG+++ HY+VEKMD +T RWVP
Sbjct: 5067 AAVKVTVIDVPQPPEGPLHPTDVTKSSCVLKWNPPKDDGGSEVTHYIVEKMDTDTLRWVP 5126

Query: 360  MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT 419
            +GD +GT  R ++LIEGH+YNFRVKAVNKIGESLPL     ITAKDP+G+PD+PG P  T
Sbjct: 5127 VGDAAGTTMRIDHLIEGHNYNFRVKAVNKIGESLPLTTFDSITAKDPYGKPDKPGTPQAT 5186

Query: 420  DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEY 479
            DWG++ VDL+WTPPKKDGGS I  Y+IEK+ KYGPWEKA  V  N T  SVPDL EG EY
Sbjct: 5187 DWGRNFVDLQWTPPKKDGGSEILSYVIEKREKYGPWEKAVTVNGNKTKASVPDLTEGHEY 5246

Query: 480  EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPF----------- 528
            EFRVIAVNKGGPG+PS AS  +TCKP+F+ PVID   L D+  +  N             
Sbjct: 5247 EFRVIAVNKGGPGDPSDASEVITCKPKFLEPVIDTTFLPDLIVRAGNKINYTVPIEAAPR 5306

Query: 529  ------------------------------ITLLFKN----FVLDLNEGLKSMVKLSYID 554
                                          I    +N    + L L   L      +++ 
Sbjct: 5307 PTVKWSVNESPIDSGSRVDIQIYNSQVIFEIPFSVRNDTGRYTLTLENNLGKCSASAHV- 5365

Query: 555  NVPGKPSKPE----ATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
             V  +PS PE     ++V KD  ++ W+ P+ +GG+ I  Y +E+ + + G W
Sbjct: 5366 TVLDRPSPPEGPLDVSNVRKDGCRLTWKIPLDDGGAPILHYVIEKMDISRGTW 5418

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233817|ref|XP_971502.2| PREDICTED: similar to CG32019-PA [Tribolium castaneum]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 292/642 (45%), Positives = 370/642 (57%), Gaps = 73/642 (11%)

Query: 28   GEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK 87
            G P+   D  A G  LN RP     A   G      +++ ++     W    +T+G    
Sbjct: 4984 GGPLKVSDVHANGCKLNWRP----PADDGGQPVDRYIVEKMDEATGRWVPAGETDGPETS 5039

Query: 88   GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGT---LLKDSIYE 144
              V  L+ G +Y+FRV AVNK G  EP   TA  I            GT   +  DS + 
Sbjct: 5040 LDVDGLVPGKKYKFRVRAVNKQGKSEPLT-TAQAIEAKNPFDEPGKTGTPEIIDYDSDFV 5098

Query: 145  QLK-----------RSGLF----DQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 189
            +LK            +G      D+F+  P WEKCA+ EGD P+GKV DLIEG  YEFR+
Sbjct: 5099 ELKWDRPESDGGSPITGYVIEKRDKFN--PNWEKCAEVEGDVPQGKVKDLIEGTPYEFRI 5156

Query: 190  LAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 249
             AVNK GPGEPSD +  H+AR K ++P I+R+ L DIKVR G +FE ++ VIGEP P+K 
Sbjct: 5157 RAVNKAGPGEPSDASKIHVARPKNLAPKIDRNALLDIKVRVGQSFELNVPVIGEPPPSKV 5216

Query: 250  WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
            W     T+ + DR KIVN+D  T LKV D+KRGDSG+Y L  KN  G D  T  VTVLD+
Sbjct: 5217 WELKGNTLFNTDRLKIVNEDYKTNLKVTDAKRGDSGVYQLTAKNVNGRDVATVNVTVLDV 5276

Query: 310  PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
            P+PPEGPLK  N++K+S  L W+ P+DDGG++I HY VEK D E  RWVP+G+  GT  R
Sbjct: 5277 PTPPEGPLKADNVSKNSLTLRWKPPKDDGGSEITHYTVEKQDTENMRWVPVGEAVGTSMR 5336

Query: 370  AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 429
              NL EGHDYNFRV AVNK+GES PL     ITAKDPF +PDRPG PT TDW KDHVDLE
Sbjct: 5337 VPNLTEGHDYNFRVCAVNKLGESAPLTTAESITAKDPFTKPDRPGAPTPTDWDKDHVDLE 5396

Query: 430  WTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG 489
            W PP+KDGGSPI+ YIIEK+PK+G WEKA  +P N T  +VP+L EGEEYEFRVIAVNKG
Sbjct: 5397 WAPPRKDGGSPITSYIIEKRPKHGTWEKAVEIPGNTTKGTVPNLTEGEEYEFRVIAVNKG 5456

Query: 490  GPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPF--------------------- 528
            G  EPS+AS PV  KPRF AP  D+  L+D+T +    F                     
Sbjct: 5457 GQSEPSEASVPVIAKPRFQAPTFDKTLLEDITVKAGQRFGWTIPIEASPKPTVKWTVNGK 5516

Query: 529  ---------ITLLFKNFVLDLNEGLKS------------MVKLSYIDNV-----PGKPSK 562
                     I +       D++  L+S            +  ++   NV     PG P  
Sbjct: 5517 EVKSSDRIDIAVYNNKMSFDVSSSLRSDAGRYTVTLTNDLGSITASANVTVLDKPGPPQP 5576

Query: 563  P-EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
            P   ++V K+  +I+W+ P+ +GGS I  Y VE+ + + G W
Sbjct: 5577 PLNVSNVTKESARIQWKPPLDDGGSPILHYVVEKMDVSRGTW 5618

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014673|gb|EFA11121.1| hypothetical protein TcasGA2_TC004721 [Tribolium castaneum]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 292/642 (45%), Positives = 370/642 (57%), Gaps = 73/642 (11%)

Query: 28   GEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK 87
            G P+   D  A G  LN RP     A   G      +++ ++     W    +T+G    
Sbjct: 5023 GGPLKVSDVHANGCKLNWRP----PADDGGQPVDRYIVEKMDEATGRWVPAGETDGPETS 5078

Query: 88   GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGT---LLKDSIYE 144
              V  L+ G +Y+FRV AVNK G  EP   TA  I            GT   +  DS + 
Sbjct: 5079 LDVDGLVPGKKYKFRVRAVNKQGKSEPLT-TAQAIEAKNPFDEPGKTGTPEIIDYDSDFV 5137

Query: 145  QLK-----------RSGLF----DQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 189
            +LK            +G      D+F+  P WEKCA+ EGD P+GKV DLIEG  YEFR+
Sbjct: 5138 ELKWDRPESDGGSPITGYVIEKRDKFN--PNWEKCAEVEGDVPQGKVKDLIEGTPYEFRI 5195

Query: 190  LAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 249
             AVNK GPGEPSD +  H+AR K ++P I+R+ L DIKVR G +FE ++ VIGEP P+K 
Sbjct: 5196 RAVNKAGPGEPSDASKIHVARPKNLAPKIDRNALLDIKVRVGQSFELNVPVIGEPPPSKV 5255

Query: 250  WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
            W     T+ + DR KIVN+D  T LKV D+KRGDSG+Y L  KN  G D  T  VTVLD+
Sbjct: 5256 WELKGNTLFNTDRLKIVNEDYKTNLKVTDAKRGDSGVYQLTAKNVNGRDVATVNVTVLDV 5315

Query: 310  PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
            P+PPEGPLK  N++K+S  L W+ P+DDGG++I HY VEK D E  RWVP+G+  GT  R
Sbjct: 5316 PTPPEGPLKADNVSKNSLTLRWKPPKDDGGSEITHYTVEKQDTENMRWVPVGEAVGTSMR 5375

Query: 370  AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 429
              NL EGHDYNFRV AVNK+GES PL     ITAKDPF +PDRPG PT TDW KDHVDLE
Sbjct: 5376 VPNLTEGHDYNFRVCAVNKLGESAPLTTAESITAKDPFTKPDRPGAPTPTDWDKDHVDLE 5435

Query: 430  WTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG 489
            W PP+KDGGSPI+ YIIEK+PK+G WEKA  +P N T  +VP+L EGEEYEFRVIAVNKG
Sbjct: 5436 WAPPRKDGGSPITSYIIEKRPKHGTWEKAVEIPGNTTKGTVPNLTEGEEYEFRVIAVNKG 5495

Query: 490  GPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPF--------------------- 528
            G  EPS+AS PV  KPRF AP  D+  L+D+T +    F                     
Sbjct: 5496 GQSEPSEASVPVIAKPRFQAPTFDKTLLEDITVKAGQRFGWTIPIEASPKPTVKWTVNGK 5555

Query: 529  ---------ITLLFKNFVLDLNEGLKS------------MVKLSYIDNV-----PGKPSK 562
                     I +       D++  L+S            +  ++   NV     PG P  
Sbjct: 5556 EVKSSDRIDIAVYNNKMSFDVSSSLRSDAGRYTVTLTNDLGSITASANVTVLDKPGPPQP 5615

Query: 563  P-EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
            P   ++V K+  +I+W+ P+ +GGS I  Y VE+ + + G W
Sbjct: 5616 PLNVSNVTKESARIQWKPPLDDGGSPILHYVVEKMDVSRGTW 5657

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200525|gb|EFN80687.1| Titin [Harpegnathos saltator]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 273/646 (42%), Positives = 369/646 (57%), Gaps = 85/646 (13%)

Query: 30   PVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGK-VLDLIEGNHPIWEKCAQTEGDTPKG 88
            P+   D  A G  L  +P      + +G  P  K V++ ++     W    +T+G     
Sbjct: 2068 PLRATDVHAEGCKLTWKP-----PEDDGGQPVDKYVVEKMDEATGRWVPAGETDGPETNL 2122

Query: 89   KVLDLIEGNQYEFRVLAVNKGG-------------------PGEPSDPTA----PHIARA 125
            +V  L  G++Y+FRV AVNK G                   PG+P  P+      +    
Sbjct: 2123 QVEGLTPGHKYKFRVRAVNKQGKSEPLTAMQSIEAKNPFDEPGKPGTPSVVDYDTNFVEL 2182

Query: 126  KKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQY 185
            +  +     G+ +   I E+  +          P WEKCA+ +GD  +GKV DL+EG QY
Sbjct: 2183 QWDRPEEDGGSPITGYIIEKRDK--------YSPTWEKCAEVDGDVNRGKVEDLVEGTQY 2234

Query: 186  EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
            EFRV AVNK GPGEPS+ +  H+AR K + P I+R  + D+KVRAG  F+FD+ VIGEP 
Sbjct: 2235 EFRVRAVNKAGPGEPSEASKAHVARPKNLPPKIDRKYMLDVKVRAGGFFDFDVPVIGEPP 2294

Query: 246  PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305
            P+KEW   D+ +++ DR KI N+D +TK+++ ++KR DSG+YTL  +N  G D  T  V 
Sbjct: 2295 PSKEWSLKDVAVMASDRIKITNEDYNTKVRIIEAKRSDSGVYTLVARNVNGKDSATLTVN 2354

Query: 306  VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSG 365
            VLD+PSPPEGPLK  N+TK+ C L+WR P+DDGG++I +Y VEKMD E  RWVP+ + + 
Sbjct: 2355 VLDVPSPPEGPLKVDNVTKNGCTLKWRPPKDDGGSEIQYYQVEKMDTENMRWVPVAEANT 2414

Query: 366  TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDH 425
            T  R ++LIEGHDY FRV+AVNK GES PL     ITAKDPFG+PD+PG P  TDW KDH
Sbjct: 2415 TSARVDHLIEGHDYQFRVRAVNKQGESQPLTGMDIITAKDPFGKPDKPGAPVATDWDKDH 2474

Query: 426  VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIA 485
            VDLEW PPKKDGGSPI+ YIIEKKP++G WEKA  +P + T+ +VPDL EG+EYEFRVIA
Sbjct: 2475 VDLEWAPPKKDGGSPITGYIIEKKPRFGQWEKAAEIPGDKTSATVPDLVEGQEYEFRVIA 2534

Query: 486  VNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQ---------------------- 523
            VNKGGPGEPS ASAPV  KPRF+AP  D + L D+  +                      
Sbjct: 2535 VNKGGPGEPSDASAPVIAKPRFIAPSFDTHLLHDLVVRAGQKIGYTIPIVASPKPKATWT 2594

Query: 524  ----------EYNPFITLLFKNFVLDLN------------EGLKSMVKLSYIDNVPGKPS 561
                       +  + T    +F +  +            E        S    V  +P+
Sbjct: 2595 RDGIKIVADARHEMYTTNTETSFEIPFSVRGDTGRYTLTLENEHGSFSASARVTVLDRPA 2654

Query: 562  KPEA----TDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
             PEA    +++ K+   + W  P+ +GGS I  Y +E+ + + G W
Sbjct: 2655 PPEAPLDVSNITKEGCHLNWGHPLDDGGSPILHYVIEKMDLSRGTW 2700

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413804|ref|XP_003490119.1| PREDICTED: twitchin-like [Bombus impatiens]

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 269/595 (45%), Positives = 350/595 (58%), Gaps = 69/595 (11%)

Query: 75   WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK-----GK 129
            W    +T+G      V  L  G++Y+FRV AVNK G  EP   TA     AK      GK
Sbjct: 4881 WVPAGETDGPQTSLDVEGLTPGHKYKFRVRAVNKQGKSEPL--TAMQGIEAKNPFDEPGK 4938

Query: 130  -CYHLVGTLLKDSIYEQLKR---------SGLF--DQFHLCPIWEKCAQTEGDTPKGKVL 177
                 V     D +  Q  R         +G     +    P WEKCA+ EGD  +G+V 
Sbjct: 4939 PGTPTVSDYDSDFVELQWDRPQEDGGSPITGYIIEKRDKYSPTWEKCAEVEGDVNRGRVP 4998

Query: 178  DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFD 237
            DL+EG  YEFRV AVNK GPGEPSD +  H+AR K ++P I+R  + D+KV+AG  ++FD
Sbjct: 4999 DLVEGTHYEFRVRAVNKAGPGEPSDASKSHLARPKNLAPKIDRKYMLDVKVKAGGFYDFD 5058

Query: 238  INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297
            + VIGEP PTK+W      ++  DR KI+N+D +TK++V ++KR D+G+YTL  KN  G 
Sbjct: 5059 VPVIGEPPPTKQWSLKGTVLVPSDRIKIINEDYNTKVRVIEAKRSDAGVYTLEAKNINGK 5118

Query: 298  DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW 357
            D  T  V VLDIP+PPEGPLK  N+TK+ C+L+WR P+DDGG++IL+Y VEKMD E  RW
Sbjct: 5119 DTATLTVNVLDIPAPPEGPLKIDNVTKNGCDLKWRPPKDDGGSEILYYQVEKMDTENMRW 5178

Query: 358  VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 417
            VP+ + S TY   ++LIEGHDY FRV+AVNK GESLPL     ITAKDP+ +PD+PG P 
Sbjct: 5179 VPVAEASSTYAHVDHLIEGHDYQFRVRAVNKQGESLPLTGMDTITAKDPYDKPDKPGTPV 5238

Query: 418  VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGE 477
             TDW KDHVDLEWT PKKDGGSPI+ YIIEKKP++G WEKA  +    T+  VPDL EG+
Sbjct: 5239 ATDWDKDHVDLEWTRPKKDGGSPITGYIIEKKPRFGTWEKALEIDGTKTSARVPDLVEGQ 5298

Query: 478  EYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQE------------- 524
            EYEFRVIAVNK GPGEPS+AS+P+  KPRF+AP  D +AL D+  +              
Sbjct: 5299 EYEFRVIAVNKAGPGEPSEASSPIVAKPRFLAPSFDPHALSDLVVRAGQKISYIIPIQAS 5358

Query: 525  ----------------------YNPFITLLFK----------NFVLDL-NE--GLKSMVK 549
                                  Y       F+           + L L NE     S  +
Sbjct: 5359 PKPTATWTLDGEVIMADSRHEMYTTHTETTFEIPFSVRSDTGRYALTLENEHGKFSSSAR 5418

Query: 550  LSYIDNVPGKPSKP-EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
            ++ +D  P  P KP E + + K+   + W  P+ +GGS I  Y +E+ + + G W
Sbjct: 5419 VTVLDR-PSPPQKPLEISKITKEGCHLAWGHPLDDGGSPILHYIIEKMDLSRGTW 5472

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710318|ref|XP_003393739.1| PREDICTED: twitchin-like [Bombus terrestris]

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 268/595 (45%), Positives = 351/595 (58%), Gaps = 69/595 (11%)

Query: 75   WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK-----GK 129
            W    +T+G     +V  L  G++Y+FRV AVNK G  EP   TA     AK      GK
Sbjct: 4903 WVPAGETDGPQTSLQVEGLTPGHKYKFRVRAVNKQGKSEPL--TAMQGIEAKNPFDEPGK 4960

Query: 130  -CYHLVGTLLKDSIYEQLKR---------SGLF--DQFHLCPIWEKCAQTEGDTPKGKVL 177
                 V     D +  Q  R         +G     +    P WEKCA+ EGD  +G+V 
Sbjct: 4961 PGTPTVSDYDSDFVELQWDRPQEDGGSPITGYIIEKRDKYSPTWEKCAEVEGDVNRGRVP 5020

Query: 178  DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFD 237
            DL+EG  YEFRV AVNK GPGEPSD +  H+AR K ++P I+R  + D+KV+AG  ++FD
Sbjct: 5021 DLVEGTHYEFRVRAVNKAGPGEPSDASKSHLARPKNLAPKIDRKYMLDVKVKAGGFYDFD 5080

Query: 238  INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297
            + VIGEP PTK+W      ++  DR KI+N+D +TK++V ++KR D+G+YTL  KN  G 
Sbjct: 5081 VPVIGEPPPTKQWSLKGTILVPSDRIKIINEDYNTKVRVIEAKRSDAGVYTLEAKNINGK 5140

Query: 298  DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW 357
            D  T  V VLDIP+PPEGPL+  N+TK+ C+L+WR P+DDGG++IL+Y VEKMD E  RW
Sbjct: 5141 DSATLTVNVLDIPAPPEGPLRIDNVTKNGCDLKWRPPKDDGGSEILYYQVEKMDTENMRW 5200

Query: 358  VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 417
            VP+ + S TY   ++LIEGHDY FRV+AVNK GESLPL     ITAKDP+ +PD+PG P 
Sbjct: 5201 VPVAEASSTYAHVDHLIEGHDYQFRVRAVNKQGESLPLTGMDTITAKDPYDKPDKPGTPV 5260

Query: 418  VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGE 477
             TDW KDHVDLEWT PKKDGGSPI+ YIIEKKP++G WEKA  +    T+  VPDL EG+
Sbjct: 5261 ATDWDKDHVDLEWTRPKKDGGSPITGYIIEKKPRFGTWEKALEIDGTKTSARVPDLVEGQ 5320

Query: 478  EYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQE------------- 524
            EYEFRVIAVNK GPGEPS+AS+P+  KPRF+AP  D +AL D+  +              
Sbjct: 5321 EYEFRVIAVNKAGPGEPSEASSPIVAKPRFLAPSFDPHALSDLVVRAGQKISYIIPIQAS 5380

Query: 525  ----------------------YNPFITLLFK----------NFVLDL-NE--GLKSMVK 549
                                  Y       F+           + L L NE     S  +
Sbjct: 5381 PKPTATWTLDGEVIMADSRHEMYTTHTETTFEIPFSVRSDTGRYALTLENEHGKFSSSAR 5440

Query: 550  LSYIDNVPGKPSKP-EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
            ++ +D  P  P KP E + + K+   + W  P+ +GGS I  Y +E+ + + G W
Sbjct: 5441 VTVLDR-PSPPQKPLEISKITKEGCHLAWGHPLDDGGSPILHYIIEKMDLSRGTW 5494

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026625|ref|XP_003697047.1| PREDICTED: LOW QUALITY PROTEIN: twitchin-like [Apis florea]

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 268/596 (44%), Positives = 347/596 (58%), Gaps = 71/596 (11%)

Query: 75   WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKG 128
            W    +T+G     +V  L  G++Y+FRV AVNK G  EP       +   P     K G
Sbjct: 4861 WVPAGETDGPQTSLQVEGLTPGHKYKFRVRAVNKQGKSEPLAAMQSIEAKNPFDEPGKPG 4920

Query: 129  KCYHLVGTLLKDSIYEQLKR---------SGLF----DQFHLCPIWEKCAQTEGDTPKGK 175
                +V     D +  Q  R         +G      D+++  P WEKCA+ EGD  +GK
Sbjct: 4921 T--PVVSDYDSDFVELQWDRPQEDGGSPITGYIIEKRDKYN--PNWEKCAEVEGDVNRGK 4976

Query: 176  VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFE 235
            V DL+EG  YEFRV AVNK GPGEPSD +  H+AR K + P I+R  + D+KV+AG  ++
Sbjct: 4977 VNDLVEGIHYEFRVRAVNKAGPGEPSDASKSHLARPKNLPPKIDRKYMLDVKVKAGGFYD 5036

Query: 236  FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 295
            FD+ VIGEP PTKEW      ++S DR KIVN+D +TK++V +++R DSG+YTL  KN  
Sbjct: 5037 FDVPVIGEPPPTKEWSLKGTVLLSNDRIKIVNEDYNTKVRVMEARRSDSGVYTLEAKNIN 5096

Query: 296  GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG 355
            G D  T  V VLD+PS PEGPLK   +TK+ CNL+WR P+DDGG++IL+Y VEKMD E  
Sbjct: 5097 GRDSATLTVNVLDVPSAPEGPLKIDGVTKNGCNLKWRPPKDDGGSEILYYQVEKMDTENM 5156

Query: 356  RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQ 415
            RWVP+ + S TY   ++LIEGHDY FRV+AVNK GESLPL     ITAKDP+ +PD+PG 
Sbjct: 5157 RWVPVAEASSTYAHVDHLIEGHDYQFRVRAVNKQGESLPLTGMDTITAKDPYDKPDKPGT 5216

Query: 416  PTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKE 475
            P  TDW KD VDLEWTPPKKDGGSPI+ YIIEKKP++G WEKA  +    T+  VPDL E
Sbjct: 5217 PVATDWDKDRVDLEWTPPKKDGGSPITGYIIEKKPRFGQWEKALEIDGAKTSARVPDLVE 5276

Query: 476  GEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTA---QEYNPFITLL 532
            G+EYEFRVIAVNK GPGEPS+AS+P+  KPRF+AP  D +AL D+     Q+ N  I + 
Sbjct: 5277 GQEYEFRVIAVNKAGPGEPSEASSPIIAKPRFLAPSFDPHALSDLVVRAGQKINYIIPIQ 5336

Query: 533  FK--------------------------------------------NFVLDLNEGLKSMV 548
                                                             L+   G  S  
Sbjct: 5337 ASPKPTATWSLDGAVIMADSRHEMYTTSTETTFEIPFSVRSDTGRYTLTLENEHGKFSAS 5396

Query: 549  KLSYIDNVPGKPSKP-EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
                + + P  P KP E + + K+   + W  P+ +GGS I  Y +E+ + + G W
Sbjct: 5397 ARVTVLDRPSPPQKPLEISKITKEGCHLAWGHPLDDGGSPILHYVIEKMDLSRGTW 5452

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195172580|ref|XP_002027075.1| GL18185 [Drosophila persimilis] gi|194112853|gb|EDW34896.1| GL18185 [Drosophila persimilis]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 268/604 (44%), Positives = 356/604 (58%), Gaps = 70/604 (11%)

Query: 65   LDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
            LD + G    W    +T+G T   KV  L  G++Y+FRV A N+ G  +P   T PH   
Sbjct: 4554 LDEVTGR---WVPAGETDGPTTNFKVKGLTPGHKYKFRVRAKNRQGTSDPL--TTPHATE 4608

Query: 125  AKK------GKCYHLVGTLLKDSIYEQLKR---------SGLF--DQFHLCPIWEKCAQT 167
            AK             +    KD +  +  R         SG     +    P WEKCA+ 
Sbjct: 4609 AKNPYDEPTKPGTPTIKDFDKDFVDLEWARPESDGGSPISGYIIEKRDKYSPDWEKCAEV 4668

Query: 168  EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIK 227
             GD P G V DLIEG +YEFRV AVNK GPG PSD T PH+AR K + P I+R+ +SDIK
Sbjct: 4669 SGDVPNGHVPDLIEGVKYEFRVRAVNKAGPGIPSDATEPHVARPKNLPPKIDRNFMSDIK 4728

Query: 228  VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIY 287
            ++AG+ FEF++ VIGEP P+KEW   D  +I+ DR KI N+D+ TKL++ D+KR DSG Y
Sbjct: 4729 IKAGNVFEFNVPVIGEPTPSKEWTHEDSMVINSDRVKISNNDERTKLRILDAKRSDSGAY 4788

Query: 288  TLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVV 347
            TL  +N+ G D+ T KV VLD+PS PEGPL+P  +TK+S  L WR P+DDGG++I HY+V
Sbjct: 4789 TLLARNANGVDRHTVKVIVLDVPSTPEGPLRPDEVTKNSIGLRWRPPKDDGGSEITHYIV 4848

Query: 348  EKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 407
            EKMD +  RWVP+G+ +GT  RA+NLIE HDY+FRV+AVNK G+S PL    PITAKDP+
Sbjct: 4849 EKMDNDAMRWVPVGECAGTEIRADNLIENHDYSFRVRAVNKQGQSQPLGTIQPITAKDPY 4908

Query: 408  GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 467
              PD+PGQP   DWGKD VDLEW  PK+DGGSPI  Y +EK+PK+G WE+A +VP +   
Sbjct: 4909 SHPDKPGQPQAVDWGKDFVDLEWGAPKRDGGSPIISYTVEKRPKFGQWERAAVVPGDELK 4968

Query: 468  TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQ---- 523
              +PDL +G EY+FRVIAVN+GGP +PS  S+ V CKPRF+AP  D+  L D+T      
Sbjct: 4969 AHIPDLTDGGEYQFRVIAVNRGGPSDPSDPSSTVICKPRFLAPYFDKSLLNDITVHAGKR 5028

Query: 524  -------EYNPFITL------------------LFKNFV-------LDLNEGLKSMV--- 548
                   E +P  ++                  LF+N +       L  +EG  ++V   
Sbjct: 5029 LGWTLPIEASPKPSIQWLYNGKEIGPTSRVESNLFQNELTFEIPSALRSDEGRYTLVLKN 5088

Query: 549  -----KLSYIDNVPGKPSKPEA----TDVDKDHIKIKWQQPISNGGSAIKGYEVERRERT 599
                   S    V  +PS P+     + + +D   + W  P  +GGS I  Y +E+ + +
Sbjct: 5089 EHGSFDASAHATVLDRPSPPKGPLDISKISRDGCHLGWHVPDDDGGSPILHYIIEKMDLS 5148

Query: 600  SGRW 603
             G W
Sbjct: 5149 RGTW 5152

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789682|ref|XP_003251305.1| PREDICTED: LOW QUALITY PROTEIN: twitchin [Apis mellifera]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/596 (44%), Positives = 348/596 (58%), Gaps = 71/596 (11%)

Query: 75   WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKG 128
            W    +T+G     +V  L  G++Y+FRV AVNK G  EP       +   P     K G
Sbjct: 4799 WVPAGETDGPQTSLQVEGLTPGHKYKFRVRAVNKQGKSEPLAAMQSIEAKNPFDEPGKPG 4858

Query: 129  KCYHLVGTLLKDSIYEQLKR---------SGLF----DQFHLCPIWEKCAQTEGDTPKGK 175
                +V     D +  Q  R         +G      D+++  P WEKCA+ EGD  +GK
Sbjct: 4859 T--PVVSDYDSDFVELQWDRPQEDGGSPITGYIIEKRDKYN--PNWEKCAEVEGDVNRGK 4914

Query: 176  VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFE 235
            V DL+EG  YEFRV AVNK GPGEPSD +  H+AR K + P I+R  + D+KV+AG  ++
Sbjct: 4915 VNDLVEGIHYEFRVRAVNKAGPGEPSDASKSHLARPKNLPPKIDRKYMLDVKVKAGGFYD 4974

Query: 236  FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 295
            FD+ VIGEP P+KEW      ++S DR KIVN+D +TK++V +++R DSG+YTL  +N  
Sbjct: 4975 FDVPVIGEPPPSKEWSLKGTVLLSNDRIKIVNEDYNTKVRVMEARRSDSGVYTLEARNIN 5034

Query: 296  GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG 355
            G D  T  V VLD+PSPPEGPLK   +TK+ CNL+WR P+DDGG++IL+Y VEKMD E  
Sbjct: 5035 GKDSATLTVNVLDVPSPPEGPLKIDGVTKNGCNLKWRPPKDDGGSEILYYQVEKMDTENM 5094

Query: 356  RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQ 415
            RWVP+ + + TY   ++LIEGHDY FRV+AVNK GESLPL     ITAKDP+ +PD+PG 
Sbjct: 5095 RWVPVAEATSTYAHVDHLIEGHDYQFRVRAVNKQGESLPLTGMDTITAKDPYDKPDKPGT 5154

Query: 416  PTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKE 475
            P  TDW KD VDLEWTPPKKDGGSPI+ YI+EKKP++G WEKA  +    T+  VPDL E
Sbjct: 5155 PVATDWDKDRVDLEWTPPKKDGGSPITGYIVEKKPRFGQWEKALEIDGAKTSARVPDLVE 5214

Query: 476  GEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTA---QEYNPFITLL 532
            G+EYEFRVIAVNK GPGEPS+AS+P+  KPRF+AP  D +AL D+     Q+ N  I + 
Sbjct: 5215 GQEYEFRVIAVNKAGPGEPSEASSPIVAKPRFLAPSFDPHALSDLVVRAGQKINYIIPIQ 5274

Query: 533  FK--------------------------------------------NFVLDLNEGLKSMV 548
                                                             L+   G  S  
Sbjct: 5275 ASPKPTATWSVDGAVIMADSRHEMYTTSTETTFEIPFSVRSDTGRYTLTLENEHGKFSAS 5334

Query: 549  KLSYIDNVPGKPSKP-EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
                + + P  P KP E + + K+   + W  P+ +GGS I  Y +E+ + + G W
Sbjct: 5335 ARVTVLDRPSPPQKPLEISKITKEGCHLAWGHPLDDGGSPILHYVIEKMDLSRGTW 5390

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	616
FB|FBgn0005666	8933	bt "bent" [Drosophila melanoga	0.751	0.051	0.492	1.7e-144
WB|WBGene00006759	7158	unc-22 [Caenorhabditis elegans	0.821	0.070	0.396	8.6e-109
ZFIN|ZDB-GENE-030616-413	28	ttnb "titin b" [Danio rerio (t	0.737	16.21	0.317	2.7e-67
UNIPROTKB|F1PV45	35	F1PV45 "Uncharacterized protei	0.727	12.8	0.326	6.5e-73
UNIPROTKB|F1N757	34	F1N757 "Uncharacterized protei	0.737	13.35	0.360	2.9e-73
MGI|MGI:98864	35	Ttn "titin" [Mus musculus (tax	0.737	12.97	0.362	2.8e-72
UNIPROTKB|Q8WZ42	34	TTN "Titin" [Homo sapiens (tax	0.788	14.29	0.344	1.2e-72
ZFIN|ZDB-GENE-030113-2	32	ttna "titin a" [Danio rerio (t	0.777	14.96	0.324	1.9e-65
UNIPROTKB|Q8T6S9	350	bt "Bent" [Drosophila simulans	0.425	0.748	0.486	3.7e-64
ZFIN|ZDB-GENE-060901-1	1120	mybpc2a "myosin binding protei	0.457	0.251	0.328	1e-36

FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)]

 Score = 1172 (417.6 bits), Expect = 1.7e-144, Sum P(4) = 1.7e-144
 Identities = 239/485 (49%), Positives = 309/485 (63%)

Query:    56 EGDTP-KGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 114
             +G  P    V++ ++     W    +T+G     KV  L  G++Y+FRV A N+ G  EP
Sbjct:  5100 DGGQPIDNYVVEKLDETTGRWIPAGETDGPVTALKVGGLTPGHKYKFRVRAKNRQGTSEP 5159

Query:   115 SDPTAPHIARAKKGKCYHLVGT-LLKDSIYE----QLKR---------SGLF----DQFH 156
                TA  I            GT  +KD   E    +  R         +G      D+F 
Sbjct:  5160 LT-TAQAIIAKNPFDVPTKPGTPTIKDFDKEFVDLEWTRPEADGGSPITGYVVEKRDKFS 5218

Query:   157 LCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
               P WEKCA+   D     V DLIEG +YEFRV AVNK GPG PSD T  H+AR K   P
Sbjct:  5219 --PDWEKCAEISDDITNAHVPDLIEGLKYEFRVRAVNKAGPGSPSDATETHVARPKNTPP 5276

Query:   217 YINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKV 276
              I+R+ +SDIK++AG+ FEFD+ V GEP+P+K+W      II+ DR KI N D  TK+++
Sbjct:  5277 KIDRNFMSDIKIKAGNVFEFDVPVTGEPLPSKDWTHEGNMIINTDRVKISNFDDRTKIRI 5336

Query:   277 FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRD 336
              D+KR D+G+YTL  +N  GTD+   KVT+LD PS PEGPL+  +++K+S  L WR P+D
Sbjct:  5337 LDAKRSDTGVYTLTARNINGTDRHNVKVTILDAPSVPEGPLRNGDVSKNSIVLRWRPPKD 5396

Query:   337 DGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLV 396
             DGG++I HYVVEKMD E  RWVP+GD + T  RA+NLIE HDY+FRV+AVNK G+S PL 
Sbjct:  5397 DGGSEITHYVVEKMDNEAMRWVPVGDCTDTEIRADNLIENHDYSFRVRAVNKQGQSQPLT 5456

Query:   397 CQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWE 456
                PITAKDP+  PD+PGQP  TDWGK  VDLEW+ PK+DGG+PIS YIIEK+PK+G WE
Sbjct:  5457 TSQPITAKDPYSHPDKPGQPQATDWGKHFVDLEWSTPKRDGGAPISSYIIEKRPKFGQWE 5516

Query:   457 KACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYA 516
             +A +V  +     VP+L  G EYEFRVIAVN+GGP +PS  S+ + CKPRF+AP  D+  
Sbjct:  5517 RAAVVLGDNCKAHVPELTNGGEYEFRVIAVNRGGPSDPSDPSSTIICKPRFLAPFFDKSL 5576

Query:   517 LQDMT 521
             L D+T
Sbjct:  5577 LNDIT 5581

GO:0005737 "cytoplasm" evidence=ISS

GO:0004687 "myosin light chain kinase activity" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

WB|WBGene00006759 unc-22 [Caenorhabditis elegans (taxid:6239)]

 Score = 898 (321.2 bits), Expect = 8.6e-109, Sum P(3) = 8.6e-109
 Identities = 216/545 (39%), Positives = 292/545 (53%)

Query:    49 WEKCAQTEGDTP-KGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN 107
             W +    +G  P +  V++  +     W   A+  GD     V  LI G++Y+FRV AVN
Sbjct:  3088 W-RAPDDDGGIPIENYVIEKYDTASGRWVPAAKVAGDKTTAVVDGLIPGHEYKFRVAAVN 3146

Query:   108 KGGPGEPSDPTAPHIARA---KKGKCYHL-VGTLLKDSIYEQLK---RSG---------- 150
               G  +P +     +A+    K GK     +    KD +  + K     G          
Sbjct:  3147 AEGESDPLETFGTTLAKDPFDKPGKTNAPEITDWDKDHVDLEWKPPANDGGAPIEEYVVE 3206

Query:   151 LFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
             + D+F   P W   A          V +L EG++YEFR+ A NK G G+PSD +A  +A+
Sbjct:  3207 MKDEFS--PFWNDVAHVPAGQTNATVGNLKEGSKYEFRIRAKNKAGLGDPSD-SASAVAK 3263

Query:   211 AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 270
             A+ V P I+R+ + +IKV+AG +F  +I V GEP PT  W      + S DR K+ N+D 
Sbjct:  3264 ARNVPPVIDRNSIQEIKVKAGQDFSLNIPVSGEPTPTITWTFEGTPVESDDRMKLNNEDG 3323

Query:   271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLE 330
              TK  V  + R D+G Y +  +N  GTD    KVTVLD PS P GPL  +NI K  C+L 
Sbjct:  3324 KTKFHVKRALRSDTGTYIIKAENENGTDTAEVKVTVLDHPSSPRGPLDVTNIVKDGCDLA 3383

Query:   331 WRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIG 390
             W+ P DDGG +I HYV+EK D  TGRW   G+   T    ++L +GH+Y FRVKAVN+ G
Sbjct:  3384 WKEPEDDGGAEISHYVIEKQDAATGRWTACGESKDTNFHVDDLTQGHEYKFRVKAVNRHG 3443

Query:   391 ESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP 450
             +S PL  +  I AKDPF R D+PG P + DW KDH DL+WTPP  DGG+PI  Y++E + 
Sbjct:  3444 DSDPLEAREAIIAKDPFDRADKPGTPEIVDWDKDHADLKWTPPADDGGAPIEGYLVEMRT 3503

Query:   451 KYGPWEKACIVPAN-ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVA 509
               G W  A  V A  +TAT V  LK G+ Y+FRV A+NK G   PS  S  +  KPR +A
Sbjct:  3504 PSGDWVPAVTVGAGELTAT-VDGLKPGQTYQFRVKALNKAGESTPSDPSRTMVAKPRHLA 3562

Query:   510 PVIDQYALQDM-TAQEYNPFITLLFKNFVLDLN-EGLKSMVKLSYIDNVPGKP-SKPEAT 566
             P I++    DM  AQ      TL   NF  D+N EG +   K+ +  N  G P S    T
Sbjct:  3563 PKINR----DMFVAQRVKAGQTL---NF--DVNVEG-EPAPKIEWFLN--GSPLSSGGNT 3610

Query:   567 DVDKD 571
              +D +
Sbjct:  3611 HIDNN 3615

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0031672 "A band" evidence=IDA

ZFIN|ZDB-GENE-030616-413 ttnb "titin b" [Danio rerio (taxid:7955)]

 Score = 568 (205.0 bits), Expect = 2.7e-67, Sum P(3) = 2.7e-67
 Identities = 153/482 (31%), Positives = 227/482 (47%)

Query:    48 IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN 107
             +W++     G    G ++D  +     W     T       K+ DL  G  Y FRVLA N
Sbjct: 15528 LWDEPLIDGGSEITGYIVDKRDAERKAWSNVT-TSCTKTSFKIEDLEPGRSYCFRVLAQN 15586

Query:   108 KGGPGEPSDPTAPHIARAKKGKCYHLVGTLL-KDSIYEQLKR----SGLFDQFHLCPI-- 160
             + G GEP +      A  + G        L+ KDS     K+     G     ++  +  
Sbjct: 15587 QYGIGEPCETVDAVRASEQPGPVMDFKTLLVTKDSCTLSWKKPISDGGSRIIAYVLEVLN 15646

Query:   161 ----WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
                 W++  +++      K  DL+EG +Y++RV A N  G G   + +   +A+   V P
Sbjct: 15647 GEDKWKELLRSKNMQYSAK--DLVEGREYKYRVFATNDSGDGPVKELSV--LAKDINVLP 15702

Query:   217 YINRDQLSDIK--VRAGSNFEFDINVIGEPIPTKEWLCN-DITIISKDRFKIVNDDKSTK 273
               +   L ++    + GSN    I +IG+P P   W    D  +    R  + +   +T 
Sbjct: 15703 SCDLRDLPNLNYIAKEGSNVRLKIPIIGKPTPAVSWKKGEDENLTDTGRVCVESTAVNTT 15762

Query:   274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRA 333
             L + D +R D+  YT+ ++NS GT + T  V V+  P  P GP+K   +T     L+W A
Sbjct: 15763 LLIRDCQRTDASKYTITLRNSAGTKESTIFVRVVGKPGIPNGPIKFKEVTADGATLKWSA 15822

Query:   334 PRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTYTRAENLIEGHDYNFRVKAVNK--I 389
             P+DDGG+++++Y++EK D  T  WV +    V+ ++ R   L EG +Y FRV A NK  I
Sbjct: 15823 PKDDGGSEVINYILEKRDSITNMWVTVSSSVVTNSF-RVTGLHEGTEYIFRVSAENKYGI 15881

Query:   390 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 449
             GE L      P+ AK PF  PD P  P V     D   L W  P+K GGSPI+ Y +E K
Sbjct: 15882 GEGLK---SEPMVAKHPFNVPDSPPPPQVMSMRHDSATLTWFDPRKTGGSPITGYHVEFK 15938

Query:   450 PKYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFV 508
              +    W++A   P  +    V  L EG EYEFRV+A+N  G G PS  + P+       
Sbjct: 15939 ERNSMLWKRANSAPLKMRDFKVTGLTEGLEYEFRVMAINLAGVGRPSPPTEPLVALDAID 15998

Query:   509 AP 510
             AP
Sbjct: 15999 AP 16000

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0014866 "skeletal myofibril assembly" evidence=IMP

UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 626 (225.4 bits), Expect = 6.5e-73, Sum P(3) = 6.5e-73
 Identities = 153/468 (32%), Positives = 228/468 (48%)

Query:    49 WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
             W++     G    G +++  E N  +W K   T   + +     L+EG +Y FR+ A+NK
Sbjct: 20867 WDRPDSDGGSPITGYLIERKERNSLLWVKANDTPVRSLEYPCAGLVEGLEYSFRIYALNK 20926

Query:   109 GGPGEPSDPTAPHIARAK---KGKCYHL-VGTLLKDSIYEQLKRSG---LFDQF-HLCPI 160
              G   PS PT    AR      GK   + +       I+ + K  G   +   F   C +
Sbjct: 20927 AGSSPPSKPTEYVTARMPVDPPGKPEVIDISKNTVSLIWARPKHDGGSKIIGYFVEACKL 20986

Query:   161 ----WEKCAQTEGDTPKGK--VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKV 214
                 W +C  +    P+ +  V  L E  QY+FR +A       +PS+P+ P   +A+ V
Sbjct: 20987 PGDKWVRCNTSPHQIPQEEYTVTGLEENAQYQFRAIAKTAVNISQPSEPSDPVTIQAENV 21046

Query:   215 SPYINRD--QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
              P I+      S + V+AG+N   D  V G+P+PT  W      +   +  K+       
Sbjct: 21047 PPRIDLSVAMKSLLTVKAGTNVCLDATVFGKPMPTVSWKKEGTLLKPSEGIKMAMQRNLC 21106

Query:   273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWR 332
              L++F   R DSG YT+  +NS G+   T K+ VLD P PP   +K + +      L W 
Sbjct: 21107 TLELFSVNRKDSGDYTITAENSSGSKSATIKLKVLDKPGPPAS-VKINKMYADRAMLSWE 21165

Query:   333 APRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGTYTRAENLIEGHDYNFRVKAVNKIGE 391
              P +DGG++I +Y+++K +     W  +   V  T    E LIEGH+Y FR+ A NK G 
Sbjct: 21166 PPLEDGGSEITNYIIDKRETSRPNWAQVSATVPITSCSVEKLIEGHEYQFRICAENKYGV 21225

Query:   392 SLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK 451
               P+  + P  AK+P+  P R   P +++  KDH+ + W PP  DGGSPI+ Y++EK+  
Sbjct: 21226 GDPIFTE-PAVAKNPYDPPGRCDPPVISNITKDHMTVSWKPPADDGGSPITGYLVEKRET 21284

Query:   452 YGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
             +   W K    P          L+EG EYEFRV A+NK GPG+PS AS
Sbjct: 21285 HAVNWTKVNRKPVIERTIKATGLQEGTEYEFRVTAINKAGPGKPSDAS 21332

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 632 (227.5 bits), Expect = 2.9e-73, Sum P(3) = 2.9e-73
 Identities = 172/477 (36%), Positives = 237/477 (49%)

Query:    49 WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
             W +     G    G  L+  E N  +W K  +T     K K   L EG +YEFRV A N 
Sbjct: 23303 WNEPVSDGGSKVIGYHLERKERNSILWVKLNKTPIPQTKFKTTGLDEGIEYEFRVSAENI 23362

Query:   109 GGPGEPSDPTAPHIARAK---KGKCYHLVGTLLKDSIYEQLKR---------SGLFDQFH 156
              G G+PS  +  ++AR      G+   ++ T  ++S+  Q K+         +G   +  
Sbjct: 23363 VGIGKPSKVSESYVARDPCDPPGRPEPIIVT--RNSVTLQWKKPAYDGGSKITGYIVEKK 23420

Query:   157 LCPI--WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP-GEPSDPTAPHIARAKK 213
               P   W K + T     + +V  L+E ++YEFRV+A N  G   EPS+ T    AR + 
Sbjct: 23421 ELPDGRWMKASFTNVIDTQFEVTGLVEDHRYEFRVIARNAAGVFSEPSESTGAITARDEV 23480

Query:   214 VSPYINRD-QLSD-IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
               P I  D +  D I V AG  F+ D ++ G+PIPT +W+  D  + +  R +I + D +
Sbjct: 23481 EPPQIRMDPKYKDTIVVHAGELFKIDADIHGKPIPTTQWIKGDHELSNTARLEIKSTDFA 23540

Query:   272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEW 331
             T L V D+ R DSG Y L  KN  G    T  V VLD P PPEGP+  S +T   C L W
Sbjct: 23541 TSLSVKDAIRIDSGSYILKAKNVAGEKSVTVNVKVLDRPGPPEGPIVISGVTAEKCTLAW 23600

Query:   332 RAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYTRAENLIEGHDYNFRVKAVNKIG 390
             + P  DGG+DI++Y+VE+ +     W  +  +V     +   L+EG++Y FRV AVNK G
Sbjct: 23601 KPPLQDGGSDIINYIVERRETSRLVWTVVDANVQTLGCKVTKLLEGNEYIFRVMAVNKYG 23660

Query:   391 ESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP 450
                PL  + P+TAK+PF  PD P  P +T   KD + + W  P  DGGS I  Y++EK+ 
Sbjct: 23661 VGEPLESE-PVTAKNPFVVPDAPKAPEITAVTKDSMIVVWERPAFDGGSEILGYVLEKRD 23719

Query:   451 KYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA-PVTCKP 505
             K G  W +            V  L E   YEFRV A N  G  EPS  SA    C P
Sbjct: 23720 KEGIRWTRCHKRLIGELRLRVTGLLENHNYEFRVSAENAAGLSEPSPPSAYQKACDP 23776

GO:0060048 "cardiac muscle contraction" evidence=IEA

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0048769 "sarcomerogenesis" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=IEA

GO:0045859 "regulation of protein kinase activity" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0043056 "forward locomotion" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IEA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007076 "mitotic chromosome condensation" evidence=IEA

GO:0005865 "striated muscle thin filament" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003300 "cardiac muscle hypertrophy" evidence=IEA

GO:0002020 "protease binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)]

 Score = 626 (225.4 bits), Expect = 2.8e-72, Sum P(3) = 2.8e-72
 Identities = 173/477 (36%), Positives = 237/477 (49%)

Query:    49 WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
             W +     G    G  L+  E N  +W K  +T     K K   L EG +YEFRV A N 
Sbjct: 24150 WHEPVSDGGSKVIGYHLERKERNSILWVKLNKTPIPQTKFKTTGLEEGIEYEFRVSAENI 24209

Query:   109 GGPGEPSDPT---APHIARAKKGKCYHLVGTLLKDSIYEQLKR---------SGLFDQFH 156
              G G+PS P+   A H      G+   ++ T  ++S+  Q K+         +G   +  
Sbjct: 24210 VGIGKPSKPSECYAAHDPCDPPGRPEAIIVT--RNSVTLQWKKPTYDGGSKITGYIVEKK 24267

Query:   157 LCPI--WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP-GEPSDPTAPHIARAKK 213
               P   W K + T     + +V  L+E ++YEFRV+A N  G   EPS+ T    AR + 
Sbjct: 24268 ELPDGRWMKASFTNIIDTQFEVTGLLEDHRYEFRVIARNAAGVFSEPSESTGAITARDEV 24327

Query:   214 VSPYINRD-QLSD-IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
               P I+ D +  D + V+AG +F+ D ++ G+PIPT +W+  D  + S  R +I + D +
Sbjct: 24328 EPPRISMDPKYRDTVVVQAGESFKIDADIYGKPIPTTQWVKGDQELSSTARLEIKSTDFA 24387

Query:   272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEW 331
             T L V D+ R DSG Y L  KN  G    T  V VLD P PPEGP+  S +T   C L W
Sbjct: 24388 TSLSVKDAVRVDSGNYILKAKNVAGEKSVTINVKVLDRPGPPEGPVAISGVTAEKCTLAW 24447

Query:   332 RAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYTRAENLIEGHDYNFRVKAVNKIG 390
             + P  DGG+DI +Y+VE+ +     W  +  +V     +   L+EG++Y FR+ AVNK G
Sbjct: 24448 KPPLQDGGSDITNYIVERRETSRLVWTLVDANVQTLSCKVLKLLEGNEYIFRIMAVNKYG 24507

Query:   391 ESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP 450
                PL  +S I AK+PF  PD P  P VT   KD + + W  P  DGGS I  Y++EK+ 
Sbjct: 24508 VGEPLESESLI-AKNPFVVPDAPKAPEVTAVTKDSMIVVWERPASDGGSEILGYVLEKRD 24566

Query:   451 KYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA-PVTCKP 505
             K G  W +            V  L E   YEFRV A N  G  EPS  SA    C P
Sbjct: 24567 KEGIRWTRCHKRLIGELRLRVTGLLENHNYEFRVSAENAAGLSEPSPPSAYQKACDP 24623

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000794 "condensed nuclear chromosome" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0002020 "protease binding" evidence=ISO

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0003300 "cardiac muscle hypertrophy" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005859 "muscle myosin complex" evidence=TAS

GO:0005865 "striated muscle thin filament" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006936 "muscle contraction" evidence=IMP

GO:0007512 "adult heart development" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030017 "sarcomere" evidence=IDA

GO:0030018 "Z disc" evidence=ISO;IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=ISO

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=ISO

GO:0030506 "ankyrin binding" evidence=IPI

GO:0031430 "M band" evidence=ISO;IDA

GO:0031433 "telethonin binding" evidence=ISO

GO:0031672 "A band" evidence=IDA

GO:0031674 "I band" evidence=ISO;IDA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0042805 "actinin binding" evidence=ISO

GO:0043056 "forward locomotion" evidence=IMP

GO:0043621 "protein self-association" evidence=ISO

GO:0045214 "sarcomere organization" evidence=ISO;IMP;TAS

GO:0045859 "regulation of protein kinase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048739 "cardiac muscle fiber development" evidence=ISO

GO:0048769 "sarcomerogenesis" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051015 "actin filament binding" evidence=ISO

GO:0051371 "muscle alpha-actinin binding" evidence=ISO

GO:0051592 "response to calcium ion" evidence=ISO

GO:0055002 "striated muscle cell development" evidence=IMP

GO:0055003 "cardiac myofibril assembly" evidence=ISO;IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)]

 Score = 632 (227.5 bits), Expect = 1.2e-72, Sum P(3) = 1.2e-72
 Identities = 176/511 (34%), Positives = 251/511 (49%)

Query:    15 SAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPI 74
             S  T  ++   + G P   V   +  + + ++  W +     G    G  L+  E N  +
Sbjct: 23256 SEPTVAQYPFKVPGPPGTPVVTLSSRDSMEVQ--WNEPISDGGSRVIGYHLERKERNSIL 23313

Query:    75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK---KGKCY 131
             W K  +T     K K   L EG +YEFRV A N  G G+PS  +  ++AR      G+  
Sbjct: 23314 WVKLNKTPIPQTKFKTTGLEEGVEYEFRVSAENIVGIGKPSKVSECYVARDPCDPPGRPE 23373

Query:   132 HLVGTLLKDSIYEQLKR---------SGLFDQFHLCPI--WEKCAQTEGDTPKGKVLDLI 180
              ++ T  ++S+  Q K+         +G   +    P   W K + T       +V  L+
Sbjct: 23374 AIIVT--RNSVTLQWKKPTYDGGSKITGYIVEKKELPEGRWMKASFTNIIDTHFEVTGLV 23431

Query:   181 EGNQYEFRVLAVNKGGP-GEPSDPTAPHIARAKKVSPYINRD-QLSD-IKVRAGSNFEFD 237
             E ++YEFRV+A N  G   EPS+ T    AR +   P I+ D +  D I V AG +F+ D
Sbjct: 23432 EDHRYEFRVIARNAAGVFSEPSESTGAITARDEVDPPRISMDPKYKDTIVVHAGESFKVD 23491

Query:   238 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297
              ++ G+PIPT +W+  D  + +  R +I + D +T L V D+ R DSG Y L  KN  G 
Sbjct: 23492 ADIYGKPIPTIQWIKGDQELSNTARLEIKSTDFATSLSVKDAVRVDSGNYILKAKNVAGE 23551

Query:   298 DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW 357
                T  V VLD P PPEGP+  S +T   C L W+ P  DGG+DI++Y+VE+ +     W
Sbjct: 23552 RSVTVNVKVLDRPGPPEGPVVISGVTAEKCTLAWKPPLQDGGSDIINYIVERRETSRLVW 23611

Query:   358 VPM-GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQP 416
               +  +V     +   L+EG++Y FR+ AVNK G   PL  + P+ AK+PF  PD P  P
Sbjct: 23612 TVVDANVQTLSCKVTKLLEGNEYTFRIMAVNKYGVGEPLESE-PVVAKNPFVVPDAPKAP 23670

Query:   417 TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKE 475
              VT   KD + + W  P  DGGS I  Y++EK+ K G  W +            V  L E
Sbjct: 23671 EVTTVTKDSMIVVWERPASDGGSEILGYVLEKRDKEGIRWTRCHKRLIGELRLRVTGLIE 23730

Query:   476 GEEYEFRVIAVNKGGPGEPSKASA-PVTCKP 505
               +YEFRV A N  G  EPS  SA    C P
Sbjct: 23731 NHDYEFRVSAENAAGLSEPSPPSAYQKACDP 23761

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0031430 "M band" evidence=IEA;IDA

GO:0043056 "forward locomotion" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0006936 "muscle contraction" evidence=NAS;TAS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0006941 "striated muscle contraction" evidence=TAS

GO:0002020 "protease binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=IPI

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030049 "muscle filament sliding" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0042802 "identical protein binding" evidence=IPI

GO:0051592 "response to calcium ion" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0030240 "skeletal muscle thin filament assembly" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0048739 "cardiac muscle fiber development" evidence=IMP

GO:0055008 "cardiac muscle tissue morphogenesis" evidence=IMP

GO:0031674 "I band" evidence=IDA

GO:0055003 "cardiac myofibril assembly" evidence=IMP

GO:0000794 "condensed nuclear chromosome" evidence=IDA

GO:0007076 "mitotic chromosome condensation" evidence=IEP

GO:0051015 "actin filament binding" evidence=IDA

GO:0042805 "actinin binding" evidence=IDA;IPI

GO:0050790 "regulation of catalytic activity" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=IMP

GO:0060048 "cardiac muscle contraction" evidence=IMP

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

GO:0035995 "detection of muscle stretch" evidence=TAS

GO:0031433 "telethonin binding" evidence=ISS;IPI

GO:0003300 "cardiac muscle hypertrophy" evidence=IMP

GO:0048769 "sarcomerogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

ZFIN|ZDB-GENE-030113-2 ttna "titin a" [Danio rerio (taxid:7955)]

 Score = 558 (201.5 bits), Expect = 1.9e-65, Sum P(3) = 1.9e-65
 Identities = 168/517 (32%), Positives = 239/517 (46%)

Query:    13 KLSAGTTLKFDANIIGEPVPHV---DWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIE 69
             K++  T L  D    G PV H+   D R+    L+    W+      G      V++  +
Sbjct: 16967 KIATCTVLVLDKP--G-PVQHLRVSDVRSDSAQLS----WKDPEDNGGARITNFVVEKKD 17019

Query:    70 GNHPIWEK-CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA------PHI 122
                P W   C+ ++  +   K   LIEG  Y FRV A N+ G  E  + T       P  
Sbjct: 17020 AASPQWVPICSSSKKRSMMAK--HLIEGTSYMFRVAAENQFGRSEYVETTKAIKAMNPLF 17077

Query:   123 ARAKKGKCYHLVGTLLKDSIYEQLK---RSGLFDQFHLCPIWEKCAQTEG------DTPK 173
                     +H+     K  ++ Q     R+G  D       +++  + +         P+
Sbjct: 17078 PPGPPKDLHHVDAD--KTEVWLQWNWPDRTGGSDITGFLVEYQEEGEKDWIVFKTVSIPE 17135

Query:   174 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQ--LSDIKVRAG 231
               V  L EG  Y FRV   N  G   P D T P + + K V P +  D   +  I V+AG
Sbjct: 17136 CHVTGLEEGKTYRFRVKTENAIGLSRP-DTTVPVLCQEKLVPPIVEVDVKLIEGIIVKAG 17194

Query:   232 SNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV 291
             S       + G P+PT +W+ +   I S+   KI  D+ ST L + D  R  +GIY L V
Sbjct: 17195 STIRLPALMRGLPVPTAKWVIDGEEIKSEGNTKIDTDNFSTVLSIADCTRNHTGIYILTV 17254

Query:   292 KNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMD 351
              NS G+   +  VTVLD+P+ P GP+    +T  S  ++WR P+DDGG+ +++Y+VEK +
Sbjct: 17255 SNSAGSKTVSLNVTVLDVPAAPIGPVNILEVTPDSMVIDWRPPKDDGGSPVMNYIVEKRE 17314

Query:   352 METGRW--VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGR 409
                  W  V  G  S T  +   L +G +Y  R++A NK+G    L   +P  A+  F  
Sbjct: 17315 SNKETWGGVSSGSTS-TRLKISRLQQGVEYVVRIRAENKMGIGAALE-SAPTVARHQFEA 17372

Query:   410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
             P  PG+P  +D  +D + L WT P  DGGSPIS YIIE++ K G W +    P       
Sbjct: 17373 PGHPGKPVASDLSEDALTLGWTMPLFDGGSPISGYIIERRHKGGKWIRVNKTPCKELRYR 17432

Query:   470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT-CKP 505
             V  L EG EYEFRV A N  G   PS  S P   C+P
Sbjct: 17433 VLGLFEGNEYEFRVFAENIAGFSGPSPVSDPAKPCRP 17469

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005319 "lipid transporter activity" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IMP

GO:0060047 "heart contraction" evidence=IMP

GO:0008307 "structural constituent of muscle" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

UNIPROTKB|Q8T6S9 bt "Bent" [Drosophila simulans (taxid:7240)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 129/265 (48%), Positives = 164/265 (61%)

Query:   267 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSS 326
             N D +TKLKV  + R DSGIYT+  +N+ G D    KVTV+D P+PP GPLK   I   S
Sbjct:     1 NVDYNTKLKVNSATRSDSGIYTVFAENANGEDSADVKVTVIDKPAPPNGPLKVDEINSES 60

Query:   327 CNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT--RAENLIEGHDYNFRVK 384
             C L W  P DDGG  I +YVVEK+D  TGRW+P G   G  T  + + L  GH Y FRV+
Sbjct:    61 CTLHWNPPDDDGGQPIDNYVVEKLDEATGRWIPAGQTDGPVTALKVKGLTPGHKYKFRVR 120

Query:   385 AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQY 444
             A N+ G S PL     I AK+PF  P +PG PT+ D+ K+ VDLEWT P+ DGGSPI+ Y
Sbjct:   121 AKNRQGTSEPLTTTQAIIAKNPFDEPTKPGTPTIKDFDKEFVDLEWTRPEADGGSPITGY 180

Query:   445 IIEKKPKYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503
             ++EK+ K+ P WEK   +  +IT   VPDL EG +YEFRV AVNK GPG PS A+     
Sbjct:   181 VVEKRDKFSPDWEKCAEISDDITNAHVPDLIEGLKYEFRVRAVNKAGPGLPSDATETHVA 240

Query:   504 KPRFVAPVIDQYALQDMTAQEYNPF 528
             + +   P ID+  + D+  +  N F
Sbjct:   241 RSKNTPPKIDRNFMSDIKIKAGNVF 265

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

ZFIN|ZDB-GENE-060901-1 mybpc2a "myosin binding protein C, fast type a" [Danio rerio (taxid:7955)]

 Score = 354 (129.7 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
 Identities = 96/292 (32%), Positives = 139/292 (47%)

Query:   226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD-SKRGDS 284
             I V AG+   FD+++ GEP PT  W   D+ I   +    V   K+    V + ++R D 
Sbjct:   526 IIVVAGNKLRFDVDITGEPPPTVAWKKGDMEISQAEGRVRVETRKALSCFVIEGAERSDE 585

Query:   285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILH 344
             G+Y + V N  G DK    V ++D+P PPE  +K   + + S ++EW  P+ DGG  +  
Sbjct:   586 GLYHITVTNPAGEDKADVFVKIVDVPDPPEN-VKCLGVGEDSASIEWEPPKFDGGVPVKG 644

Query:   345 YVVEKMDMETGRWVPMG-DV--SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPI 401
             Y++E+    + RW  +  D+  S TY  A+ +IEG  Y  RV AVN IG S P     P 
Sbjct:   645 YLMERKKKGSSRWTKLNFDIYESTTY-EAKKMIEGVFYEMRVFAVNGIGISQPSANSQPF 703

Query:   402 TAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACI 460
                 P   P R     +TD G     L+W PP++ G   +  Y IE   +    W KA  
Sbjct:   704 MPIAPTSEPTRLTVDDITD-GT--CALKWLPPERIGAGGLDGYFIEYCVEGATEWVKANE 760

Query:   461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVI 512
              P    +  V  L  GE+  FRV AVN+ G    +  +  VT +    +P I
Sbjct:   761 TPVEKNSFRVRGLPVGEKMLFRVTAVNRAGLSPWAVLAQAVTIREIVESPKI 812

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	616
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	4e-21
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	3e-18
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	5e-18
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	3e-17
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	1e-15
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	3e-14
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	3e-13
smart00410	85	smart00410, IG_like, Immunoglobulin like	7e-13
smart00409	85	smart00409, IG, Immunoglobulin	7e-13
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	2e-10
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	2e-09
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	2e-08
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	5e-07
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	5e-07
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	2e-06
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	4e-05
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	4e-05
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	6e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	6e-05
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-04
cd05735	88	cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) doma	5e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	7e-04
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	0.001
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.001

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 87.9 bits (218), Expect = 4e-21
 Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 2/94 (2%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIVPANITAT 468
           P  P    VTD     V L WTPP+ DGG PI+ Y++E + K  G W++  + P + T+ 
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEVEVTPGSETSY 59

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           ++  LK G EYEFRV AVN GG   PS++    T
Sbjct: 60  TLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 79.8 bits (197), Expect = 3e-18
 Identities = 38/95 (40%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW--VPMGDVSGTY 367
           PSPP   L+ +++T +S  L W  P DDGG  I  YVVE  +  +G W  V +   S T 
Sbjct: 1   PSPPTN-LRVTDVTSTSVTLSWTPPEDDGG-PITGYVVEYREKGSGDWKEVEVTPGSETS 58

Query: 368 TRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT 402
                L  G +Y FRV+AVN  GES P    +  T
Sbjct: 59  YTLTGLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 78.8 bits (195), Expect = 5e-18
 Identities = 26/85 (30%), Positives = 44/85 (51%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           +  D++V+ G +  F   V G+P PT  W  +   + S DRFK+  +  +  L + + + 
Sbjct: 6   KPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQP 65

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTV 306
            D G YT    NS G  + +A++TV
Sbjct: 66  DDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 76.5 bits (188), Expect = 3e-17
 Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGG-SPISQYIIEKKPKYGPWEKACIVPANITAT 468
           P  P    VTD     V L W PP  DG    I  Y +E + +   W++   V  + T+ 
Sbjct: 1   PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKE-VNVTPSSTSY 59

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPG 492
           ++  LK G EYEFRV AVN  G G
Sbjct: 60  TLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 71.7 bits (176), Expect = 1e-15
 Identities = 35/86 (40%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS 469
             P   TVTD     + L W+PP   G  PI+ Y +E +P  G    K   VP   T+ +
Sbjct: 1   SAPTNLTVTDVTSTSLTLSWSPP--PGNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYT 58

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPS 495
           +  LK G EYE RV AVN  G G PS
Sbjct: 59  LTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 67.6 bits (165), Expect = 3e-14
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD-ILHYVVEKMDMETGRWVPMGDVSGTYT 368
           PSPP   L+ +++T +S  L W  P DDG T  I+ Y VE  +  +         S T  
Sbjct: 1   PSPPSN-LRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSY 59

Query: 369 RAENLIEGHDYNFRVKAVNKIGES 392
               L  G +Y FRV+AVN  GE 
Sbjct: 60  TLTGLKPGTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 64.5 bits (158), Expect = 3e-13
 Identities = 23/74 (31%), Positives = 35/74 (47%)

Query: 233 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK 292
           +   ++ + G P PT  W  +   +    R +I     ST L + +++R DSG YTL +K
Sbjct: 1   SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK 60

Query: 293 NSWGTDKGTAKVTV 306
           N  G    T  V V
Sbjct: 61  NPAGEKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 64.1 bits (156), Expect = 7e-13
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT-IISKDRFKIVNDDKSTKLKVFDSKRG 282
             + V+ G +        G P P   W       +    RF +     ++ L + +    
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 283 DSGIYTLAVKNSWGTDKGTAKVTV 306
           DSG YT A  NS G+      +TV
Sbjct: 62  DSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 64.1 bits (156), Expect = 7e-13
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT-IISKDRFKIVNDDKSTKLKVFDSKRG 282
             + V+ G +        G P P   W       +    RF +     ++ L + +    
Sbjct: 2   PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 283 DSGIYTLAVKNSWGTDKGTAKVTV 306
           DSG YT A  NS G+      +TV
Sbjct: 62  DSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
           S P   L  +++T +S  L W  P  +G   I  Y VE   +  G       V GT T  
Sbjct: 1   SAPTN-LTVTDVTSTSLTLSWSPPPGNG--PITGYEVEYRPVNGGEEWKEITVPGTTTSY 57

Query: 371 --ENLIEGHDYNFRVKAVNKIGESLP 394
               L  G +Y  RV+AVN  GE  P
Sbjct: 58  TLTGLKPGTEYEVRVQAVNGAGEGPP 83

Length = 84

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 31/89 (34%), Positives = 46/89 (51%)

Query: 225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDS 284
           D+KVRAG + E    V G    T  W+     I   +  KI N + S+KL + + ++   
Sbjct: 9   DMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHC 68

Query: 285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
           G YTL V+N  G+ +    +TV+D P PP
Sbjct: 69  GCYTLEVENKLGSRQAQVNLTVVDKPDPP 97

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
           P  P+    TDV    + + W  P  + G  I GY VE RE+ SG W ++   P    +
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPP-EDDGGPITGYVVEYREKGSGDWKEVEVTPGSETS 58

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 19/55 (34%), Positives = 26/55 (47%)

Query: 64  VLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
           V++  E     W++   T G      +  L  G +YEFRV AVN GG   PS+  
Sbjct: 35  VVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESV 89

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 17/44 (38%), Positives = 22/44 (50%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
           W++   T G      +  L  G +YEFRV AVN GG   PS+  
Sbjct: 46  WKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPPSESV 89

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKRGDS 284
           I V AG+    D+ + GEP PT  W   D     ++ R ++ +    +   +  ++R D 
Sbjct: 5   IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDE 64

Query: 285 GIYTLAVKNSWGTDKGTAKVTV 306
           G+YT+ V N  G D  +  V V
Sbjct: 65  GVYTITVTNPVGEDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 236 FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW 295
           F+  V G+P PT +W+ N   +I  D FKIV +     L+V    + D G Y    +N  
Sbjct: 4   FECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDV 60

Query: 296 GTDKGTAKVTV 306
           G  +  A++ +
Sbjct: 61  GNVQAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 22/71 (30%), Positives = 36/71 (50%)

Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 285
           + V  G +  F  +V GEP PT  W+     I+S  R +I + +  +  ++   +  D G
Sbjct: 13  LTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEG 72

Query: 286 IYTLAVKNSWG 296
            YT+ V+NS G
Sbjct: 73  NYTVVVENSEG 83

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 557 PGKPSKPEATDVDKDHIKIKWQQPIS-NGGSAIKGYEVERRERTSGRWIKITPDPIRTK 614
           P  PS    TDV    + + W+ P        I GY VE RE     W ++   P  T 
Sbjct: 1   PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYRE-EGSEWKEVNVTPSSTS 58

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 235 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS 294
           EF   V G+P+PT  W   D  +  K R +I+ DDKS  LK+ +   GD G YT   +N 
Sbjct: 2   EFQCEVGGDPVPTVLWRKEDGEL-PKGRAEIL-DDKS--LKIRNVTAGDEGSYTCEAENM 57

Query: 295 WGTDKGTAKVTV 306
            G  + +A +TV
Sbjct: 58  VGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 2  PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN 44
          P   +    D+++  G + +F   + G+P P V W   G PL 
Sbjct: 1  PKFTQ-KPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLR 42

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 240 VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK----LKVFDSKRGDSGIYTLAVKNSW 295
             G P PT  WL N   + S    ++ +   ++     L + +    DSG YT    NS 
Sbjct: 7   ASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66

Query: 296 GTDKGTAK 303
           GT   +  
Sbjct: 67  GTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143212 cd05735, Ig8_DSCAM, Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 264 KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
           K V D+  + L++  + R DSG ++    NS+G D+G  ++TV + P PP
Sbjct: 39  KEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPP 88

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 88

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 239 NVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297
            V G+P P   WL ND  +   D + + V   K   L +      DSG Y + VKN +G 
Sbjct: 24  TVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG 83

Query: 298 DKGTAKVTV 306
           +     V+V
Sbjct: 84  ETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 18/59 (30%), Positives = 22/59 (37%)

Query: 57  GDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115
                G  ++    N     K     G T    +  L  G +YE RV AVN  G G PS
Sbjct: 26  NGPITGYEVEYRPVNGGEEWKEITVPGTTTSYTLTGLKPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS-TKLKVFDS 279
             +SD +   GS+  ++    G P P   WL N   + S++R ++   D   TKL +   
Sbjct: 4   KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSL--- 60

Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTV 306
              DSG+Y    +N  GT   +A++ V
Sbjct: 61  --SDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	616
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4221|consensus	1381		100.0
KOG4221|consensus	1381		100.0
KOG4222|consensus	1281		100.0
KOG4222|consensus	1281		99.97
KOG4194|consensus	873		99.84
PHA02785	326	IL-beta-binding protein; Provisional	99.83
KOG0196|consensus	996		99.75
KOG4194|consensus	873		99.71
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.62
PHA02826	227	IL-1 receptor-like protein; Provisional	99.6
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.54
PHA02785	326	IL-beta-binding protein; Provisional	99.51
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.49
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.49
KOG3515|consensus	741		99.47
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.43
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.42
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.4
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.4
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.4
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.4
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.39
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.39
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.39
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.39
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.38
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.38
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.37
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.37
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.36
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.36
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.35
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.35
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.35
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.34
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.34
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.32
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.32
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.31
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.31
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.31
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.3
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.3
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.3
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.3
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.3
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.29
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.29
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.29
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.29
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.29
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	99.29
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.28
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.28
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.28
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.28
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.28
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.27
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.27
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.27
KOG3515|consensus	741		99.26
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.26
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.26
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.25
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.25
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.25
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.25
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.24
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.24
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.24
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.24
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.23
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.23
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.23
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.22
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.22
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.22
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.21
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.21
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.21
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.2
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.2
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.2
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.2
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.2
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.2
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.19
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.18
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.18
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.18
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.18
KOG0196|consensus	996		99.18
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.16
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.16
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.16
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.16
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.16
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.16
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.16
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.15
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.15
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.15
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.14
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.14
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.14
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.13
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.13
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.13
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.12
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.12
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.11
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.11
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.11
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.1
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.1
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.09
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.09
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.09
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.08
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.08
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.08
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.08
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.07
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.07
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.07
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.07
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.06
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.06
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.06
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.06
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.06
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.05
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.05
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.05
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.04
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.04
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.04
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.04
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.04
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.03
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.03
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.03
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.01
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.01
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.01
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.01
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.01
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.0
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.99
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.99
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.99
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.96
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.95
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.95
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.95
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.94
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.93
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.93
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.93
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.92
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.92
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.91
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.91
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.91
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.91
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.91
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.9
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.87
KOG4802|consensus	516		98.87
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.85
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.84
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.84
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.84
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.83
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.82
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.82
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.82
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.81
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.81
KOG4258|consensus	1025		98.81
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.79
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.79
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.79
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.77
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.77
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.76
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.73
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.73
PHA02826	227	IL-1 receptor-like protein; Provisional	98.72
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.7
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.69
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.68
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.66
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.65
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.63
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	98.62
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.59
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.58
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.57
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.57
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.56
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.54
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.54
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.51
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.51
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.5
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.5
smart00409	86	IG Immunoglobulin.	98.49
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.49
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.46
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.46
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.43
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.41
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.4
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.39
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.37
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.36
smart00409	86	IG Immunoglobulin.	98.36
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.34
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.33
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.32
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.32
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.3
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.27
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.24
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	98.23
KOG4258|consensus	1025		98.22
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.21
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.2
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.17
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.16
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.15
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.13
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.12
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.09
KOG0613|consensus	1205		98.07
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	98.03
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.01
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.96
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.94
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.92
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.91
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.9
KOG0613|consensus	1205		97.88
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.88
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.87
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.87
KOG4802|consensus	516		97.86
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.84
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.8
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	97.79
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.79
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.79
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.78
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.78
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.77
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	97.77
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.77
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.76
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.75
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.74
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.73
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.73
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	97.71
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.68
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.68
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	97.68
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	97.66
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	97.66
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	97.66
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.65
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.65
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.63
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.63
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.61
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.6
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.59
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.56
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	97.55
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	97.54
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.53
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.53
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.52
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.51
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.51
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.51
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.5
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.5
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	97.46
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.42
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.41
PHA03376	221	BARF1; Provisional	97.41
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.4
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.39
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.37
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.37
smart00407	75	IGc1 Immunoglobulin C-Type.	97.35
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.29
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.21
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.18
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.18
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.17
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.17
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	97.17
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.17
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.17
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.16
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.15
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.13
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.12
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.1
KOG4152|consensus	830		97.1
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.08
KOG4367|consensus	699		97.08
KOG4152|consensus	830		97.05
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.01
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	96.99
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	96.96
KOG3632|consensus	1335		96.93
COG4733	952	Phage-related protein, tail component [Function un	96.93
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	96.92
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	96.92
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.91
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.91
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	96.89
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	96.86
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	96.85
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	96.85
PF10179	300	DUF2369: Uncharacterised conserved protein (DUF236	96.84
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.83
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	96.81
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	96.79
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.77
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.74
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.73
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	96.7
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.65
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.64
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.63
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.61
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	96.58
PHA03376	221	BARF1; Provisional	96.58
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.56
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	96.54
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.53
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	96.5
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.45
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	96.45
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	96.39
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.38
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.34
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	96.3
smart00406	81	IGv Immunoglobulin V-Type.	96.25
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.2
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	96.19
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.17
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	96.08
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	96.03
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	96.0
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	95.95
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	95.92
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	95.71
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	95.69
smart00406	81	IGv Immunoglobulin V-Type.	95.65
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	95.61
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	95.6
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	95.45
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	95.4
KOG4367|consensus	699		95.21
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	94.84
smart00407	75	IGc1 Immunoglobulin C-Type.	94.77
KOG4228|consensus	1087		94.63
COG3401	343	Fibronectin type 3 domain-containing protein [Gene	94.61
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	94.56
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	94.45
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	94.34
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	94.17
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	94.09
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	94.04
PHA02982	251	hypothetical protein; Provisional	93.91
cd05770	93	IgC_beta2m Class I major histocompatibility comple	93.72
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	92.93
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	92.69
KOG3632|consensus	1335		92.64
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	92.43
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	92.08
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	91.64
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	91.53
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	91.11
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	90.88
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	90.67
PHA03270	466	envelope glycoprotein C; Provisional	90.53
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	90.46
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	90.25
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	90.03
KOG1480|consensus	909		89.91
KOG4597|consensus	560		89.64
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	89.41
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	89.08
KOG4806|consensus	454		89.05
PHA03271	490	envelope glycoprotein C; Provisional	88.19
KOG4806|consensus	454		88.14
PHA03042	286	CD47-like protein; Provisional	87.95
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	87.85
PHA02633	63	hypothetical protein; Provisional	87.19
PHA02982	251	hypothetical protein; Provisional	86.99
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	86.63
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	86.09
KOG4597|consensus	560		85.68
TIGR00868	863	hCaCC calcium-activated chloride channel protein 1	85.61
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	85.5
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	85.15
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	85.09
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	83.06
PHA03269	566	envelope glycoprotein C; Provisional	82.87
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	81.94
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	81.85
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	81.05
PLN02533	427	probable purple acid phosphatase	81.0

>KOG3513|consensus

Probab=100.00  E-value=3.7e-57  Score=457.51  Aligned_cols=530  Identities=20%  Similarity=0.295  Sum_probs=414.2

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCe-eee-------------e-------ccceEEEeecCCCC
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGN-PLN-------------L-------RPIWEKCAQTEGDT   59 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~-~l~-------------~-------~G~Y~C~a~n~~~~   59 (616)
                      +|+|-...|+......|+.|.|.|.|.|+|.|+|.|.|.|+ +++             +       +|.|+|.|+|..|.
T Consensus       240 ~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~  319 (1051)
T KOG3513|consen  240 APKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS  319 (1051)
T ss_pred             CCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccc
Confidence            68898888889999999999999999999999999999887 332             1       99999999999887


Q ss_pred             ------------------Cc-------e-eEeeeccCCccc----eeeccccC----------CCCCceEecCcccCCeE
Q psy12426         60 ------------------PK-------G-KVLDLIEGNHPI----WEKCAQTE----------GDTPKGKVLDLIEGNQY   99 (616)
Q Consensus        60 ------------------~~-------~-~v~~~~~~~~p~----w~~~~~~~----------~~~~~l~i~~l~~~~~~   99 (616)
                                        ++       . ...+|.+.|.|.    |++++.+.          +..+.|.|.+|++.|+|
T Consensus       320 ~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg  399 (1051)
T KOG3513|consen  320 ATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSG  399 (1051)
T ss_pred             ceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCe
Confidence                              11       1 344665557777    99999773          34577999999999999


Q ss_pred             EEEEEEEcCCCCCCCCCCCCcceeecCC---Cce--------------eeeecCcccccEEEEeeccCcccccccCCCce
Q psy12426        100 EFRVLAVNKGGPGEPSDPTAPHIARAKK---GKC--------------YHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWE  162 (616)
Q Consensus       100 ~y~c~a~n~~g~~~~~~~~~~~~~~~~~---p~~--------------~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~  162 (616)
                      .|+|.|.|..|...+++...+.......   |..              .++.+.|.+.|.|.+  .++.    ...+...
T Consensus       400 ~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k--~~~~----~~~~~r~  473 (1051)
T KOG3513|consen  400 VYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLK--GGEK----LLQSGRI  473 (1051)
T ss_pred             EEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEc--CCcc----cccCceE
Confidence            9999999999999888433322221111   111              112289999999999  5221    1111111


Q ss_pred             EecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEee
Q psy12426        163 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG  242 (616)
Q Consensus       163 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~  242 (616)
                      .  .  ..+.+|.|.+++.+|.|.|+|.|.|..|.....   ..+.+   ..++.|. ..+....+..|+.+.|.|++..
T Consensus       474 ~--i--~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~---~~L~V---kd~tri~-~~P~~~~v~~g~~v~l~Ce~sh  542 (1051)
T KOG3513|consen  474 R--I--LEDGTLEISNVTRSDAGKYTCVAENKLGKAEST---GNLIV---KDATRIT-LAPSNTDVKVGESVTLTCEASH  542 (1051)
T ss_pred             E--E--CCCCcEEecccCcccCcEEEEEEEcccCccceE---EEEEE---ecCceEE-eccchhhhccCceEEEEeeccc
Confidence            1  1  244589999999999999999999999986532   12222   2556664 4788899999999999999997


Q ss_pred             ecCc--eeEEEECCeeecc---cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCc
Q psy12426        243 EPIP--TKEWLCNDITIIS---KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPL  317 (616)
Q Consensus       243 ~p~~--~~~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~  317 (616)
                      .+..  .+.|.+||..+..   ...+......+...|+|.+++..+.|.|.|.|.....+.+..+.+.|..+|.+|.. +
T Consensus       543 D~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~-v  621 (1051)
T KOG3513|consen  543 DPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPD-V  621 (1051)
T ss_pred             CCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCc-e
Confidence            7654  7899999997643   34444443332357999999999999999999998888888999999999999997 8


Q ss_pred             cceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccc-----cceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        318 KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS-----GTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       318 ~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~-----~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      .+..+....+.|+|++..+ +.++|..|.|+.+......|.......     ..+.++.+|.|...|+|||.|.|..|.|
T Consensus       622 ~~~~i~~t~~~lsW~~g~d-n~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~g  700 (1051)
T KOG3513|consen  622 HVDDISDTTARLSWSPGSD-NNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIG  700 (1051)
T ss_pred             eEeeeccceEEEEeecCCC-CCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccC
Confidence            8999999999999996554 456799999999988888898775411     1346788999999999999999999999


Q ss_pred             CCccccCCEEccCCCCCC-CCCCCCEEEEecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCC--CceEeEeecCCccEE
Q psy12426        393 LPLVCQSPITAKDPFGRP-DRPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYG--PWEKACIVPANITAT  468 (616)
Q Consensus       393 ~~~~~s~~~~~~~~~~~p-~~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~  468 (616)
                      +++.+|..+...  +++| ..|.++.......+.+.|.|++.. ...+++-.+|+|.|+..+.  .|......+.+...+
T Consensus       701 ePS~pS~~~rT~--ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~  778 (1051)
T KOG3513|consen  701 EPSPPSEKVRTP--EAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRY  778 (1051)
T ss_pred             CCCCCccceecC--CCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceE
Confidence            999888776643  4444 457788888888999999999744 3445678899999999887  798887776655666


Q ss_pred             EcC--CCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccc
Q psy12426        469 SVP--DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKS  546 (616)
Q Consensus       469 ~l~--~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  546 (616)
                      .+.  ...|.+.|.++|+|+|..|.|+.|........+                                          
T Consensus       779 V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~E------------------------------------------  816 (1051)
T KOG3513|consen  779 VVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGE------------------------------------------  816 (1051)
T ss_pred             EEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCC------------------------------------------
Confidence            654  456699999999999999999877654433322                                          


Q ss_pred             eeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCC
Q psy12426        547 MVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG  601 (616)
Q Consensus       547 ~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~  601 (616)
                             ..++.+|..+.+...+.+.+.|+|++|..+ ||.+++|+|+|...++.
T Consensus       817 -------d~P~~ap~~~~~~~~s~s~~~v~W~~~~~~-nG~l~gY~v~Y~~~~~~  863 (1051)
T KOG3513|consen  817 -------DEPPVAPTKLSAKPLSSSEVNLSWKPPLWD-NGKLTGYEVKYWKINEK  863 (1051)
T ss_pred             -------CCCCCCCccceeecccCceEEEEecCcCcc-CCccceeEEEEEEcCCC
Confidence                   245788999999999999999999998766 69999999999977655

>KOG3513|consensus

Probab=100.00  E-value=2e-55  Score=444.98  Aligned_cols=473  Identities=20%  Similarity=0.299  Sum_probs=348.2

Q ss_pred             eEeeeccCCccc----eeeccccCC--------CCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcc---------
Q psy12426         63 KVLDLIEGNHPI----WEKCAQTEG--------DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH---------  121 (616)
Q Consensus        63 ~v~~~~~~~~p~----w~~~~~~~~--------~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~---------  121 (616)
                      ..++|.+.|.|.    |.+.+....        -...|.|.+++.+|+|.|+|.|.|..|.........+.         
T Consensus       259 v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~  338 (1051)
T KOG3513|consen  259 VKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKP  338 (1051)
T ss_pred             EEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhccc
Confidence            344777778877    999877422        23679999999999999999999999955443111110         


Q ss_pred             -eeecCCCceee----eecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCC
Q psy12426        122 -IARAKKGKCYH----LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  196 (616)
Q Consensus       122 -~~~~~~p~~~~----~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g  196 (616)
                       .+.+..-.++.    ..|.|.+.|+|++  ++-+++   ...+..+   ..-....|+|.+|+..|+|.|+|.|.|.+|
T Consensus       339 ~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk--Ng~pl~---~~~r~~~---~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G  410 (1051)
T KOG3513|consen  339 QDTEADTGSNVTLECKASGKPNPTVKWLK--NGEPLE---PAERDPR---YKIDDGTLIISNVQESDSGVYQCIAENKYG  410 (1051)
T ss_pred             ceeEecCCCCeEEEEEecCCCCCceEEee--CCeecC---ccCCCcc---eEEeCCEEEEEecccccCeEEEeeeecccc
Confidence             01111111222    3399999999999  533433   1111111   112334899999999999999999999999


Q ss_pred             CCCCCCCCCCEEeccccCCCceeccCC-cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEE
Q psy12426        197 PGEPSDPTAPHIARAKKVSPYINRDQL-SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK  275 (616)
Q Consensus       197 ~~~~s~~~~~~~~~~~~~~P~~~~~~~-~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~  275 (616)
                      ....+     ..++....+|.|..... ..+.+..|.++.+.|...+.|.+.++|.+++..+..+.|+.+..++   +|.
T Consensus       411 ~i~an-----A~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edG---tL~  482 (1051)
T KOG3513|consen  411 TIYAN-----AELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDG---TLE  482 (1051)
T ss_pred             eEeee-----eEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCC---cEE
Confidence            86644     33333345676653333 3367889999999999999999999999999988888999998887   999


Q ss_pred             ecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEE--E---
Q psy12426        276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEK--M---  350 (616)
Q Consensus       276 i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~--~---  350 (616)
                      |.+++.+|.|.|+|.|.|..|.......|.|.+++..-..|.......+..+.|.|+...+..-  ...|.+..  +   
T Consensus       483 I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~l--d~~f~W~~nG~~id  560 (1051)
T KOG3513|consen  483 ISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSL--DITFTWKKNGRPID  560 (1051)
T ss_pred             ecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCc--ceEEEEEECCEEhh
Confidence            9999999999999999999999999999999998876555555556678899999997544322  12222211  1   


Q ss_pred             -eCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEE
Q psy12426        351 -DMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE  429 (616)
Q Consensus       351 -~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~  429 (616)
                       .................+++.++.-.+.+.|.|.+.........   ...+.+.   ++|.+|.++++..++.+++.|+
T Consensus       561 ~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~---~A~l~V~---gpPgpP~~v~~~~i~~t~~~ls  634 (1051)
T KOG3513|consen  561 FNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASA---RADLLVR---GPPGPPPDVHVDDISDTTARLS  634 (1051)
T ss_pred             ccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhc---ccceEEe---cCCCCCCceeEeeeccceEEEE
Confidence             01112222222222245777766555555666666554333221   2334443   7888999999999999999999


Q ss_pred             ecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCcc---EEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426        430 WTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANIT---ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       430 W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~---~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      |.+ ..+++++|.+|.|+.+.... .|.....+++...   +.++-+|.|...|+|||.|+|..|.|++|.++...++.+
T Consensus       635 W~~-g~dn~SpI~~Y~iq~rt~~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~e  713 (1051)
T KOG3513|consen  635 WSP-GSDNNSPIEKYTIQFRTPFPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPE  713 (1051)
T ss_pred             eec-CCCCCCCceEEeEEecCCCCCcceEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCC
Confidence            995 55677789999999998866 9998887766554   577889999999999999999999999999999888765


Q ss_pred             CcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeC-CCCCC
Q psy12426        506 RFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQ-PISNG  584 (616)
Q Consensus       506 ~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~-p~~~~  584 (616)
                      .                                                .+-.+|.++.......+.+.|+|+| +...+
T Consensus       714 a------------------------------------------------~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~q  745 (1051)
T KOG3513|consen  714 A------------------------------------------------APSVNPSNVKGGGGSPTELVITWEPLPEEEQ  745 (1051)
T ss_pred             C------------------------------------------------CCccCCccccccCCCCceEEEEeccCCHHHc
Confidence            4                                                3347788888888899999999999 65677


Q ss_pred             CCceeeeEEEEeecCCC-CeEEccC
Q psy12426        585 GSAIKGYEVERRERTSG-RWIKITP  608 (616)
Q Consensus       585 ~~~i~~Y~i~~~~~~~~-~w~~~~~  608 (616)
                      ||+-.+|+|.||..+.. +|.+...
T Consensus       746 NG~gfgY~Vswr~~g~~~~W~~~~v  770 (1051)
T KOG3513|consen  746 NGPGFGYRVSWRPQGADKEWKEVIV  770 (1051)
T ss_pred             cCCCceEEEEEEeCCCCcccceeEe
Confidence            99999999999999987 9987544

>KOG4221|consensus

Probab=100.00  E-value=1e-46  Score=379.17  Aligned_cols=575  Identities=18%  Similarity=0.243  Sum_probs=402.1

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee----------------------ccceEEEeecCCCC---
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL----------------------RPIWEKCAQTEGDT---   59 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~----------------------~G~Y~C~a~n~~~~---   59 (616)
                      +++.|...++.+|++|.|.|.++|.|+|+|.|.|||..|..                      +|.|+|+|.|..++   
T Consensus       240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~ida  319 (1381)
T KOG4221|consen  240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDA  319 (1381)
T ss_pred             eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCccccc
Confidence            35678899999999999999999999999999999987743                      99999999995332   


Q ss_pred             ---------------Cce--------eEeeeccCCccc----eeeccccC--------CCCCceEecCcccCCeEEEEEE
Q psy12426         60 ---------------PKG--------KVLDLIEGNHPI----WEKCAQTE--------GDTPKGKVLDLIEGNQYEFRVL  104 (616)
Q Consensus        60 ---------------~~~--------~v~~~~~~~~p~----w~~~~~~~--------~~~~~l~i~~l~~~~~~~y~c~  104 (616)
                                     |..        ...+|...|.|+    |++++...        ...+.+.|..+-..|.+.|+|.
T Consensus       320 saev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcv  399 (1381)
T KOG4221|consen  320 SAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCV  399 (1381)
T ss_pred             ceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhh
Confidence                           111        223455557777    99998762        2234488888999999999999


Q ss_pred             EEcCCCCCCCCCCCCcce--------eecCCCcee-------eee----------cCcccccEEEEeeccCcccccccCC
Q psy12426        105 AVNKGGPGEPSDPTAPHI--------ARAKKGKCY-------HLV----------GTLLKDSIYEQLKRSGLFDQFHLCP  159 (616)
Q Consensus       105 a~n~~g~~~~~~~~~~~~--------~~~~~p~~~-------~~~----------g~p~~~~~~~~~~~~~~~~~~~~~~  159 (616)
                      |.|+.|..+..+......        ..+..|.++       +|+          ++++..|+|++  .       ....
T Consensus       400 aen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~--~-------~~~~  470 (1381)
T KOG4221|consen  400 AENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFY--K-------VEGD  470 (1381)
T ss_pred             hccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceEEEEE--e-------cCCc
Confidence            999999887763221110        111122221       122          78889999998  5       2333


Q ss_pred             CceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEE
Q psy12426        160 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDIN  239 (616)
Q Consensus       160 ~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~  239 (616)
                      .|.+............+.+|++...|.++|.|.|..|.+.++..   +.+....++|..         ...+....+.|.
T Consensus       471 ~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~p---LkV~t~pEgp~~---------~~a~ats~~ti~  538 (1381)
T KOG4221|consen  471 VRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAP---LKVTTQPEGPVQ---------LQAYATSPTTIL  538 (1381)
T ss_pred             hhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCc---eEEecCCCCCcc---------ccccccCcceEE
Confidence            45554444443378999999999999999999999999887643   333333333321         344556668899


Q ss_pred             EeeecCc----eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe---cCCCC
Q psy12426        240 VIGEPIP----TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL---DIPSP  312 (616)
Q Consensus       240 ~~~~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~---~~p~~  312 (616)
                      +.|.+++    .+.|++...... +....+....+...++|.+|.+.+.|.|+|.|.|..|.+..+..+.|.   ..|++
T Consensus       539 v~WepP~~~n~~I~~yk~~ys~~-~~~~~~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~Psa  617 (1381)
T KOG4221|consen  539 VTWEPPPFGNGPITGYKLFYSED-DTGKELRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSA  617 (1381)
T ss_pred             EEecCCCCCCCCceEEEEEEEcC-CCCceEEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCC
Confidence            9999887    899999766554 222233333445699999999999999999999999988777777664   46766


Q ss_pred             CCCCccceeecCCeEEEEEeCCCCCC-CCceEEEEEEEEeCCCCC---EEEccccccceEEeccccCCCeEEEEEEEEec
Q psy12426        313 PEGPLKPSNITKSSCNLEWRAPRDDG-GTDILHYVVEKMDMETGR---WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       313 p~~~~~~~~~~~~~~~l~W~~~~~~~-~~~i~~y~v~~~~~~~~~---~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      |.+.+.+...++.++++.|.+|.... ...+..|.++++......   |... ......+.+.+|++++.|.|++.|.+.
T Consensus       618 PP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v-~~n~~~~l~~~Lep~T~Y~vrIsa~t~  696 (1381)
T KOG4221|consen  618 PPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVV-KGNTTQYLFNGLEPNTQYRVRISAMTV  696 (1381)
T ss_pred             CCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeec-ccchhhhHhhcCCCCceEEEEEEEecc
Confidence            66658888999999999999876543 668999999998543322   2222 235677888999999999999999999


Q ss_pred             CcCCCCccccCCEEccCCC-----CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeec
Q psy12426        389 IGESLPLVCQSPITAKDPF-----GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVP  462 (616)
Q Consensus       389 ~g~~~~~~~s~~~~~~~~~-----~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~  462 (616)
                      .|.|+++.+   +...++.     ..|.+|..+++. ...+++.+.|.+|...+. .+.+|.|.|+...+ .....+.++
T Consensus       697 nGtGpaS~w---~~aeT~~~d~~e~vp~~ps~l~~~-~g~~si~vsW~Pp~~~~~-~vrgY~ig~r~g~~~p~~~tIrl~  771 (1381)
T KOG4221|consen  697 NGTGPASEW---VSAETPESDLDERVPGKPSELHVH-PGSNSIVVSWTPPPHPNI-VVRGYKIGYRPGSGIPDTGTIRLD  771 (1381)
T ss_pred             CCCCCcccc---eeccCccccccccCCCCCceeeec-cCceeEEEEeCCCCChhh-hhcceEEeeecccCCCCCccEEec
Confidence            999998654   4444432     233444444433 367899999998766544 58999999986554 445556677


Q ss_pred             CCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEec-c-------CcCCCeecc-ccccceeeee-ec------
Q psy12426        463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK-P-------RFVAPVIDQ-YALQDMTAQE-YN------  526 (616)
Q Consensus       463 ~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~-~-------~~~~p~~~~-~~~~~~~v~~-~~------  526 (616)
                      .....|.|..|.|+..|.++++|+|..|.|.+......+... +       ++.+|.-.. ..+..+.+++ |.      
T Consensus       772 ~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~t  851 (1381)
T KOG4221|consen  772 EKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQT  851 (1381)
T ss_pred             ceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceEEEEEecCCCcc
Confidence            788999999999999999999999999999876543333221 1       223333332 2344444443 21      


Q ss_pred             -----ceeEEEe----eCeeeecc-------------------cc---cc-c----e----eeeeeeecC-CCCCCCCeE
Q psy12426        527 -----PFITLLF----KNFVLDLN-------------------EG---LK-S----M----VKLSYIDNV-PGKPSKPEA  565 (616)
Q Consensus       527 -----~~~~~~~----~~~~~~~~-------------------~~---~~-~----~----~~~~~~~~~-~~~P~~~~~  565 (616)
                           ++++|.-    ++..+.+-                   ++   ++ +    .    +...+...+ ..||+++++
T Consensus       852 ~~~~~yTVr~~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tle~~P~sPP~d~tv  931 (1381)
T KOG4221|consen  852 TDNRIYTVRWSLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTLELVPSSPPRDLTV  931 (1381)
T ss_pred             ccceEEEEEEeecccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeecccCCCCCChhcee
Confidence                 6777762    22222220                   00   01 1    1    344444444 478888885


Q ss_pred             Eee-cCCcEEEEeeCCCCCCCCceeeeEEEEeecCC---CCeEEccC
Q psy12426        566 TDV-DKDHIKIKWQQPISNGGSAIKGYEVERRERTS---GRWIKITP  608 (616)
Q Consensus       566 ~~~-~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~---~~w~~~~~  608 (616)
                      ... ..+++.+.|.||... ||.|.+|.|.|.....   .+|+....
T Consensus       932 ~p~e~P~~v~v~WqPp~e~-nG~I~~Yii~Ys~~~n~~~~dWt~~t~  977 (1381)
T KOG4221|consen  932 QPDEKPTTVIVHWQPPTEP-NGEITEYIIYYSTDGNTPEHDWTIETT  977 (1381)
T ss_pred             cccCCCCccccccCCCcCC-CCceeeEEEEEecCCCCchhhceeeec
Confidence            443 589999999988755 8999999999975543   47887554

>KOG4221|consensus

Probab=100.00  E-value=3e-46  Score=375.84  Aligned_cols=523  Identities=18%  Similarity=0.258  Sum_probs=374.6

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee---------------------ccceEEEeecCCCC--------
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL---------------------RPIWEKCAQTEGDT--------   59 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~---------------------~G~Y~C~a~n~~~~--------   59 (616)
                      +.+.++..|+++.|+|.+++.|.|.+.|.||..++..                     .|.|+|.+++....        
T Consensus       147 ~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~l  226 (1381)
T KOG4221|consen  147 PESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAEL  226 (1381)
T ss_pred             ccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEE
Confidence            7889999999999999999999999999999885532                     99999999998322        


Q ss_pred             -----------------Cc------e--eEeeeccCCccc----eeeccccC---------CCCCceEecCcccCCeEEE
Q psy12426         60 -----------------PK------G--KVLDLIEGNHPI----WEKCAQTE---------GDTPKGKVLDLIEGNQYEF  101 (616)
Q Consensus        60 -----------------~~------~--~v~~~~~~~~p~----w~~~~~~~---------~~~~~l~i~~l~~~~~~~y  101 (616)
                                       |.      +  .+++|...|.|.    |++++...         ....+|.|.+++..|+|.|
T Consensus       227 tv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~Y  306 (1381)
T KOG4221|consen  227 TVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKY  306 (1381)
T ss_pred             EecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceE
Confidence                             11      1  455666666666    99988773         2246788999999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCccee--ecCCCceee--------ee----cCcccccEEEEeeccCcccccccCCCceEeccc
Q psy12426        102 RVLAVNKGGPGEPSDPTAPHIA--RAKKGKCYH--------LV----GTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQT  167 (616)
Q Consensus       102 ~c~a~n~~g~~~~~~~~~~~~~--~~~~p~~~~--------~~----g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (616)
                      .|+|.|......+++-..+..-  ....|+++.        |.    |.|++.+.|++  + |.+.  .+ .+|.+..  
T Consensus       307 tC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~k--N-gd~~--ip-sdy~ki~--  378 (1381)
T KOG4221|consen  307 TCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYK--N-GDRI--IP-SDYFKIV--  378 (1381)
T ss_pred             EEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEe--c-Cccc--Cc-ccceEec--
Confidence            9999995444444411222111  112233222        22    88999999999  4 4322  33 4555432  


Q ss_pred             CCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccc-cCCCceeccCCcceEEEcCCeEEEEEEEe-----
Q psy12426        168 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDINVI-----  241 (616)
Q Consensus       168 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~-~~~P~~~~~~~~~~~v~~g~~~~l~c~~~-----  241 (616)
                       ++. .++|..+-..|.|.|+|.|.|..|......... +..+.. ...+.+ ...+.++.+..-+...+.|.+.     
T Consensus       379 -~~~-~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~-vv~~p~~~~s~~~-~sap~~lv~~~~~srfi~~tw~~p~~~  454 (1381)
T KOG4221|consen  379 -GGG-NLRILGIVKSDEGFYQCVAENDAGSAQAAAQLE-VVPQPASASSDLL-PSAPRDLVANLVSSRFIQLTWRPPAQI  454 (1381)
T ss_pred             -CCC-CcEEEEEecccchhhhhhhccCcccccchhhhe-eccCCcccccCcc-ccCCcceecccccceeEEEeecCcccc
Confidence             222 288888999999999999999999755332211 211110 001111 1222333333333333444433     


Q ss_pred             eecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCcccee
Q psy12426        242 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSN  321 (616)
Q Consensus       242 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~  321 (616)
                      +.+.+.++|++-..... ..+.......+ ....+.++++...|.++|.|.|..|....+..|.|...|..|.. +....
T Consensus       455 ~g~i~~~~v~~~~~~~~-rer~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~-~~a~a  531 (1381)
T KOG4221|consen  455 SGNISTYTVFYKVEGDV-RERLQNTSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQ-LQAYA  531 (1381)
T ss_pred             CCCcceEEEEEecCCch-hhhheeccCCc-eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCcc-ccccc
Confidence            33455677775433222 22332222323 68899999999999999999999999999999999998887766 77777


Q ss_pred             ecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCE
Q psy12426        322 ITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPI  401 (616)
Q Consensus       322 ~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~  401 (616)
                      .+...+.+.|++|.. ++.+|.+|.+.+...+...|.... ....+++|.+|.+.+.|.|+|.|.|..|.|..   +..+
T Consensus       532 ts~~ti~v~WepP~~-~n~~I~~yk~~ys~~~~~~~~~~~-~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~s---S~~i  606 (1381)
T KOG4221|consen  532 TSPTTILVTWEPPPF-GNGPITGYKLFYSEDDTGKELRVE-NNATEYTINGLEKYTEYSIRVVAYNSAGSGVS---SADI  606 (1381)
T ss_pred             cCcceEEEEecCCCC-CCCCceEEEEEEEcCCCCceEEEe-cCccEEEeecCCCccceEEEEEEecCCCCCCC---CCce
Confidence            888999999998875 456999999999887666666553 45678999999999999999999999999876   5677


Q ss_pred             EccCCCCCCCCCCC-CEEEEecCCeEEEEecCCCC-CCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCe
Q psy12426        402 TAKDPFGRPDRPGQ-PTVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEE  478 (616)
Q Consensus       402 ~~~~~~~~p~~p~~-~~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~  478 (616)
                      .+.+..+.|++|++ +++...+.++|.|+|.+|.. ..++.|.+|.|+|+.... .......+.++...|.+.+|+|++.
T Consensus       607 ~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~  686 (1381)
T KOG4221|consen  607 TVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQ  686 (1381)
T ss_pred             EEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCce
Confidence            88788888988876 99999999999999998764 455569999999997654 3344445566788999999999999


Q ss_pred             EEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCC
Q psy12426        479 YEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPG  558 (616)
Q Consensus       479 Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (616)
                      |.|||.|.|..|.|++|.+...-|.......                                             ..|.
T Consensus       687 Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e---------------------------------------------~vp~  721 (1381)
T KOG4221|consen  687 YRVRISAMTVNGTGPASEWVSAETPESDLDE---------------------------------------------RVPG  721 (1381)
T ss_pred             EEEEEEEeccCCCCCcccceeccCccccccc---------------------------------------------cCCC
Confidence            9999999999999999987665544322110                                             2244


Q ss_pred             CCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeec
Q psy12426        559 KPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRER  598 (616)
Q Consensus       559 ~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~  598 (616)
                      +|..+. .....++|.+.|.||... +-.+.||+|.||..
T Consensus       722 ~ps~l~-~~~g~~si~vsW~Pp~~~-~~~vrgY~ig~r~g  759 (1381)
T KOG4221|consen  722 KPSELH-VHPGSNSIVVSWTPPPHP-NIVVRGYKIGYRPG  759 (1381)
T ss_pred             CCceee-eccCceeEEEEeCCCCCh-hhhhcceEEeeecc
Confidence            555443 334678999999997654 57889999999743

>KOG4222|consensus

Probab=100.00  E-value=4.3e-40  Score=329.77  Aligned_cols=496  Identities=20%  Similarity=0.261  Sum_probs=344.9

Q ss_pred             ccceEEEeecCCCC-------------------CceeEe--------eeccCCccc----eeecccc--------CCCCC
Q psy12426         46 RPIWEKCAQTEGDT-------------------PKGKVL--------DLIEGNHPI----WEKCAQT--------EGDTP   86 (616)
Q Consensus        46 ~G~Y~C~a~n~~~~-------------------~~~~v~--------~~~~~~~p~----w~~~~~~--------~~~~~   86 (616)
                      +|.|.|+|+|..|.                   |+..+.        +|.++|+|.    |.+....        ..++.
T Consensus       199 ~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~q  278 (1281)
T KOG4222|consen  199 EGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQ  278 (1281)
T ss_pred             CceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccc
Confidence            78888888887664                   233222        234557877    6664433        23336


Q ss_pred             ceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCccee--ecCCC--------ceee----eecCcccccEEEEeeccCcc
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA--RAKKG--------KCYH----LVGTLLKDSIYEQLKRSGLF  152 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~--~~~~p--------~~~~----~~g~p~~~~~~~~~~~~~~~  152 (616)
                      ++.|..+.+.|+|.|.|.|.|..|....++..+++.-  ....|        ..++    ..|+|.+.+.|.+  . |-+
T Consensus       279 tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~k--e-g~q  355 (1281)
T KOG4222|consen  279 TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLK--E-GSQ  355 (1281)
T ss_pred             cccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEec--c-Ccc
Confidence            7889999999999999999999998887743322110  00111        1222    2399999999998  3 222


Q ss_pred             cccc---cCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEE
Q psy12426        153 DQFH---LCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVR  229 (616)
Q Consensus       153 ~~~~---~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~  229 (616)
                      +-..   ......+. .+ .....|.|++++..|.|.|.|...+..|.+........+......-||.++...+.+.+..
T Consensus       356 ~llf~~~p~~~~~r~-sv-s~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~  433 (1281)
T KOG4222|consen  356 DLLFSASPPSSNGRG-SV-SPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLP  433 (1281)
T ss_pred             eecccCCCCCcCccc-ee-cCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccc
Confidence            2000   11111111 11 1122899999999999999999988888755433222222222224566666777778888


Q ss_pred             cCCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy12426        230 AGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD  308 (616)
Q Consensus       230 ~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~  308 (616)
                      .+..+.+.|.+.+.|.+.+.|.+++..+... .+..+...+   +++|.++...|.|.|+|.+.+..|....++.+.+..
T Consensus       434 v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~---~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~  510 (1281)
T KOG4222|consen  434 VGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQEIG---SLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEK  510 (1281)
T ss_pred             cCcccccChhhhCCCCCCchhhhcccccccCCcccceeeec---eeeeeeeecCCCcceeeeccCcccccccceeeEhhh
Confidence            8999999999999999999999998876533 333333333   899999999999999999999999998888887743


Q ss_pred             ---------------CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEe-CCCCCEEEccc-cccceEEec
Q psy12426        309 ---------------IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMD-METGRWVPMGD-VSGTYTRAE  371 (616)
Q Consensus       309 ---------------~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~-~~~~~~~~~~~-~~~~~~~i~  371 (616)
                                     .|.+|..+ .+..+....+.|+|......+..++..|.+++.. .-...|..... ...+...|.
T Consensus       511 ~~~s~q~~r~~D~S~~pS~p~~p-~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~  589 (1281)
T KOG4222|consen  511 AGSSQQFCRCEDPSALPSPPGTP-GVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIR  589 (1281)
T ss_pred             cCcccccccCCChhhCCCCCCCC-ccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccccceeeec
Confidence                           23344442 4667888999999998766677889999987754 44556777654 556789999


Q ss_pred             cccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCC------------C-CCCCC-EEEEecCCeEEEEecCCCCCC
Q psy12426        372 NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP------------D-RPGQP-TVTDWGKDHVDLEWTPPKKDG  437 (616)
Q Consensus       372 ~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p------------~-~p~~~-~~~~~~~~~v~l~W~~p~~~~  437 (616)
                      +|.+...|.|.|+|.|..|.+.++..+..+........-            + ....+ ....++.+++.|.|..+...+
T Consensus       590 gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~  669 (1281)
T KOG4222|consen  590 GLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHG  669 (1281)
T ss_pred             CcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeecccC
Confidence            999999999999999999998887766666543111000            0 11111 123457889999999876645


Q ss_pred             CCcceeEEEEEeeCCC---CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeecc
Q psy12426        438 GSPISQYIIEKKPKYG---PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQ  514 (616)
Q Consensus       438 ~~~i~~Y~i~~~~~~~---~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~  514 (616)
                      ..-|.+|+|.|+....   +|...........++.+.+|.|++.|+|.++.+...|.+-.+.++...+....+++|.   
T Consensus       670 ~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~PS---  746 (1281)
T KOG4222|consen  670 SQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEPPS---  746 (1281)
T ss_pred             cccccceEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccCCC---
Confidence            5569999999998765   6776655556677899999999999999999998877655555555444444333332   


Q ss_pred             ccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCC---CeEEeecCCcEEEEeeC-CCCCCCCceee
Q psy12426        515 YALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSK---PEATDVDKDHIKIKWQQ-PISNGGSAIKG  590 (616)
Q Consensus       515 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~---~~~~~~~~~~i~l~W~~-p~~~~~~~i~~  590 (616)
                                                                 .+|..   +.....+.+++.|+|.+ |.+..||.+.+
T Consensus       747 -------------------------------------------app~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg  783 (1281)
T KOG4222|consen  747 -------------------------------------------APPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQG  783 (1281)
T ss_pred             -------------------------------------------CCCCCccccccccCCCceeeEEecCCcccccCCcccc
Confidence                                                       34445   34556688899999999 55777999999


Q ss_pred             eEEEEe
Q psy12426        591 YEVERR  596 (616)
Q Consensus       591 Y~i~~~  596 (616)
                      |.|..-
T Consensus       784 ~ki~~~  789 (1281)
T KOG4222|consen  784 YKIECS  789 (1281)
T ss_pred             eeEEee
Confidence            998764

>KOG4222|consensus

Probab=99.97  E-value=2.5e-29  Score=253.00  Aligned_cols=540  Identities=21%  Similarity=0.286  Sum_probs=363.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-----------------------------ccceEE
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-----------------------------RPIWEK   51 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-----------------------------~G~Y~C   51 (616)
                      ||+|+ ++|.|..|..|+.++|.|.++|.|+|.|+|||+|.....                             .|.|.|
T Consensus        31 ~p~ii-ehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~c  109 (1281)
T KOG4222|consen   31 PPRII-EHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSC  109 (1281)
T ss_pred             CCceE-ecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEe
Confidence            57887 889999999999999999999999999999999953211                             899999


Q ss_pred             EeecCCCC--------------------Cc--------eeEeeecc-CCccc----eeecccc----------CCCCCce
Q psy12426         52 CAQTEGDT--------------------PK--------GKVLDLIE-GNHPI----WEKCAQT----------EGDTPKG   88 (616)
Q Consensus        52 ~a~n~~~~--------------------~~--------~~v~~~~~-~~~p~----w~~~~~~----------~~~~~~l   88 (616)
                      .|.|..|.                    |.        .-+++|.. .|.|.    |.+++.+          .+..+.|
T Consensus       110 vasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~L  189 (1281)
T KOG4222|consen  110 VASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNL  189 (1281)
T ss_pred             eecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcE
Confidence            99999776                    11        13344422 24444    8888877          3566889


Q ss_pred             EecCcccCCeEEEEEEEEcCCCCCCCCCCCCcce---eecCCCceee------------eecCcccccEEEEeeccCccc
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI---ARAKKGKCYH------------LVGTLLKDSIYEQLKRSGLFD  153 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~---~~~~~p~~~~------------~~g~p~~~~~~~~~~~~~~~~  153 (616)
                      .|.++...|+|.|.|.|.|..|+-+...-.....   .....|.+..            +-|.|.+.++|.+  +++.++
T Consensus       190 lIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk--~~~~~P  267 (1281)
T KOG4222|consen  190 LISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKK--DDPSLP  267 (1281)
T ss_pred             EEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeec--cCCCCC
Confidence            9999999999999999999999776552111100   1111222211            2288999999999  644333


Q ss_pred             ccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCe
Q psy12426        154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN  233 (616)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~  233 (616)
                          ..++.    +-....++.|.+..+.|+|.|.|.|.|..|.-+.+.   ..++   ..+|.| ...+.+..+..|..
T Consensus       268 ----~~ry~----i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa---~ltV---~apP~f-~kkp~dq~v~lg~~  332 (1281)
T KOG4222|consen  268 ----RSRYS----ILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASA---TLTV---QAPPSF-GKKPRDQKVALGGT  332 (1281)
T ss_pred             ----cccee----eeeccccccccccCCCcccceeeecccccccccccc---ceEE---ecCccc-ccccCccccccCce
Confidence                22222    223345899999999999999999999999876552   2332   256766 34456777888999


Q ss_pred             EEEEEEEeeecCceeEEEECCeee-c-------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITI-I-------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~-~-------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      ++|.|.+.+.|.+.+.|.+.+... .       ...+..+...+   .|+|.++...|.|.|.|...+..|.......+.
T Consensus       333 vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~  409 (1281)
T KOG4222|consen  333 VTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLE  409 (1281)
T ss_pred             EEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEE
Confidence            999999999999999999987652 1       12334444344   899999999999999999999888765544444


Q ss_pred             EecC---CCCCCC----CccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC--CCEE-EccccccceEEeccccC
Q psy12426        306 VLDI---PSPPEG----PLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET--GRWV-PMGDVSGTYTRAENLIE  375 (616)
Q Consensus       306 v~~~---p~~p~~----~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~--~~~~-~~~~~~~~~~~i~~L~~  375 (616)
                      +.+.   -.||..    +.+-+......+.+.|..-..    +.  +.+.+...+-  ..|. .........+.+.+|..
T Consensus       410 qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~----P~--p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~  483 (1281)
T KOG4222|consen  410 QTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGA----PT--PNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKG  483 (1281)
T ss_pred             EEeeeccCCCCceeeecccccccccCcccccChhhhCC----CC--CCchhhhcccccccCCcccceeeeceeeeeeeec
Confidence            3221   122211    111111113334444432111    11  1111111100  0011 11112345688889999


Q ss_pred             CCeEEEEEEEEecCcCCCCccccCCEEc------------cCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCccee
Q psy12426        376 GHDYNFRVKAVNKIGESLPLVCQSPITA------------KDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQ  443 (616)
Q Consensus       376 ~~~y~~~v~a~n~~g~~~~~~~s~~~~~------------~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~  443 (616)
                      .+.|.|+|.|.+..|+..++   ..+.+            ..+...|++|....+..++.++++|+|.+....+..++.+
T Consensus       484 ~DtG~YTc~as~~~ges~wS---atl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~  560 (1281)
T KOG4222|consen  484 PDTGRYTCIASDESGESTWS---ATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASG  560 (1281)
T ss_pred             CCCcceeeeccCcccccccc---eeeEhhhcCcccccccCCChhhCCCCCCCCccccCCCceEEecccCCCCCCccccch
Confidence            99999999999998887654   22322            2233557888888889999999999999765557789999


Q ss_pred             EEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeec--cccccc
Q psy12426        444 YIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVID--QYALQD  519 (616)
Q Consensus       444 Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~--~~~~~~  519 (616)
                      |.+++...+-  .|...... ...+.+.|.+|+|++.|.|.|+|.|..|.+.++..+..+++.++.-+-+..  .+...+
T Consensus       561 yiieafs~~~~etw~~ta~~-v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~  639 (1281)
T KOG4222|consen  561 YIIEAFSPDLGETWQTTAGR-VKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRE  639 (1281)
T ss_pred             hHHHHhhhhhcccccccccc-cccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHh
Confidence            9998865543  67665332 346789999999999999999999999999999888877665431111100  000000


Q ss_pred             eeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCe-EEeecCCcEEEEeeCCCCCCCCceeeeEEEEeec
Q psy12426        520 MTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPE-ATDVDKDHIKIKWQQPISNGGSAIKGYEVERRER  598 (616)
Q Consensus       520 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~  598 (616)
                      +                                    .+.-..+. ....+.+++.+.|..+.+.+..-|.+|+|.||..
T Consensus       640 l------------------------------------s~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~  683 (1281)
T KOG4222|consen  640 L------------------------------------SNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRISYRSL  683 (1281)
T ss_pred             h------------------------------------cccceeeccccccchhheeeeeeeecccCcccccceEEEeccC
Confidence            0                                    00111111 4456889999999998876679999999999988


Q ss_pred             CC--CCeEEcc
Q psy12426        599 TS--GRWIKIT  607 (616)
Q Consensus       599 ~~--~~w~~~~  607 (616)
                      ..  .+|..+.
T Consensus       684 ~~~~a~~s~~~  694 (1281)
T KOG4222|consen  684 GSQLAQWSNAG  694 (1281)
T ss_pred             ccccccccccc
Confidence            75  4677544

>KOG4194|consensus

Probab=99.84  E-value=6.6e-20  Score=173.73  Aligned_cols=271  Identities=17%  Similarity=0.210  Sum_probs=187.2

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEee--ecCCeeeeeeCCeeeee-----ccceEEEeecCCCCCceeEeeeccCCcc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIG--EPVPHVDWRAGGNPLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHP   73 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g--~P~p~v~W~~~~~~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p   73 (616)
                      .|+|..+ |+++....|+.++|+|.|.+  ..+-.+.|.|+.+.+..     ...|.-.+.|..                
T Consensus       503 kpqI~~q-Pe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~----------------  565 (873)
T KOG4194|consen  503 KPQIVTQ-PETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGT----------------  565 (873)
T ss_pred             CcceecC-chHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCc----------------
Confidence            3788855 99999999999999999876  33337999999863321     222222221110                


Q ss_pred             ceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCc---ceeecCCCceeee------------ecCcc
Q psy12426         74 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP---HIARAKKGKCYHL------------VGTLL  138 (616)
Q Consensus        74 ~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~---~~~~~~~p~~~~~------------~g~p~  138 (616)
                          .+....-.+.|.+.+|.-+|+|.|+|.+.|..|...+......   .......|.++++            .|.|.
T Consensus       566 ----~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~  641 (873)
T KOG4194|consen  566 ----FGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPR  641 (873)
T ss_pred             ----cchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCC
Confidence                0111222467899999999999999999999997765411100   1122244555542            19999


Q ss_pred             cccEEEEeeccCc-ccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCc
Q psy12426        139 KDSIYEQLKRSGL-FDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY  217 (616)
Q Consensus       139 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~  217 (616)
                      +.+.|.+  ++|. |+    ..+-.+. .+-.++-.+.|.|+.++|.|.|+|.|.|.+|..... +++++.     +.|.
T Consensus       642 PeIawqk--dggtdFP----AA~eRRl-~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isan-AtL~V~-----e~p~  708 (873)
T KOG4194|consen  642 PEIAWQK--DGGTDFP----AARERRL-HVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISAN-ATLTVL-----ETPS  708 (873)
T ss_pred             cceeehh--cCCCCCc----hhhhhee-eecCCCCEEEEecccccccceeEEeeeccccceeec-eEEEEe-----cCCc
Confidence            9999999  7664 43    2222222 222344478899999999999999999999986543 223232     3455


Q ss_pred             eeccCCcceEEEcCCeEEEEEEEeeecC-ceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        218 INRDQLSDIKVRAGSNFEFDINVIGEPI-PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       218 ~~~~~~~~~~v~~g~~~~l~c~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      +.. +..+..|..|+++.+.|.+.+.|. |++.|+|+++++.-..+.....  +...+++.+....|.|.|+|...|..|
T Consensus       709 f~~-PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d--~dQllvv~~~~~~daG~yTcem~~~~~  785 (873)
T KOG4194|consen  709 FSI-PLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPD--GDQLLVVKENLVEDAGIYTCEMSNTLG  785 (873)
T ss_pred             ccc-cccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCC--CCeEEEEEehhhhhcceEEEEEEeecc
Confidence            432 256788999999999999999988 9999999998877665554433  334788888889999999999999988


Q ss_pred             CceeeEEEEEec
Q psy12426        297 TDKGTAKVTVLD  308 (616)
Q Consensus       297 ~~~~~~~l~v~~  308 (616)
                      .......+.+..
T Consensus       786 ~~~~~i~l~~~~  797 (873)
T KOG4194|consen  786 TERIHICLLVYQ  797 (873)
T ss_pred             ceeeEEEEEEee
Confidence            776555555443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.83  E-value=3.6e-19  Score=169.41  Aligned_cols=242  Identities=11%  Similarity=0.041  Sum_probs=155.8

Q ss_pred             CceEecCCCeEEEEEEE-----eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426         10 GDIKLSAGTTLKFDANI-----IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~-----~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      ....+.+|+.+.|.|.+     .|.|.|.|+|+|+|.....    ...                             ...
T Consensus        34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~----~~~-----------------------------~~~   80 (326)
T PHA02785         34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR----IIP-----------------------------IDN   80 (326)
T ss_pred             chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce----EEE-----------------------------ccC
Confidence            34457789999999986     7999999999999853220    000                             011


Q ss_pred             CCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCccee------ecCCCcee--------e-------eecCcccccEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA------RAKKGKCY--------H-------LVGTLLKDSIY  143 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~------~~~~p~~~--------~-------~~g~p~~~~~~  143 (616)
                      ...+.|..+...|+|.|.|.|.|..|....+....+...      ....|..+        .       +.+.+.+.+.|
T Consensus        81 g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W  160 (326)
T PHA02785         81 GSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIW  160 (326)
T ss_pred             CceEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEE
Confidence            235778889999999999999998876554311111000      01111111        1       11567778999


Q ss_pred             EEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCC-CCCCEEeccccCCCceeccC
Q psy12426        144 EQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD-PTAPHIARAKKVSPYINRDQ  222 (616)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~-~~~~~~~~~~~~~P~~~~~~  222 (616)
                      ++  . ..    ....+   ...  .....|.|.+++.+|.|.|+|.|.|..|...... ....+.+.....+|.+  ..
T Consensus       161 ~k--~-~~----~~~~r---~~~--~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~--~~  226 (326)
T PHA02785        161 SG--H-RR----LRNKR---LKQ--RTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM--QL  226 (326)
T ss_pred             cc--C-Cc----cCCcc---eEe--cCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee--cC
Confidence            77  3 11    11111   111  1234899999999999999999999877533210 0111222223345544  23


Q ss_pred             CcceEEEcCCeEEEEEEEeeecCc---eeEEEECCeeeccc-----CcEEEEecC--------CceEEEecCCCCCCcEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIP---TKEWLCNDITIISK-----DRFKIVNDD--------KSTKLKVFDSKRGDSGI  286 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~---~~~W~~~~~~~~~~-----~~~~~~~~~--------~~~~l~i~~l~~~~~g~  286 (616)
                      +....+..|+.+.|.|.+.+.|.+   .+.|++|+..+...     .++......        ....|.|.+++.+|.|.
T Consensus       227 p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~  306 (326)
T PHA02785        227 PEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATT  306 (326)
T ss_pred             CCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCee
Confidence            467778889999999999998864   89999999877432     122222110        13579999999999999


Q ss_pred             EEEEEEcCCCCc
Q psy12426        287 YTLAVKNSWGTD  298 (616)
Q Consensus       287 y~c~a~n~~g~~  298 (616)
                      |+|.|.|..|..
T Consensus       307 Y~C~A~n~~~~~  318 (326)
T PHA02785        307 FTCMAFTIPSIS  318 (326)
T ss_pred             eEEEEEeccCce
Confidence            999999977543

>KOG0196|consensus

Probab=99.75  E-value=1.2e-16  Score=157.12  Aligned_cols=195  Identities=25%  Similarity=0.350  Sum_probs=153.3

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEe--CCCCCEEEccc----------cccceEEeccccC
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMD--METGRWVPMGD----------VSGTYTRAENLIE  375 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~--~~~~~~~~~~~----------~~~~~~~i~~L~~  375 (616)
                      .+|+.|.+ + +..+++.++.|.|.+|.+.++..-..|.+..+.  .....+..+..          -....+.+.+|.+
T Consensus       330 ~PPSaP~n-l-is~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~a  407 (996)
T KOG0196|consen  330 RPPSAPRN-L-ISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLA  407 (996)
T ss_pred             CCCCccce-e-eeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccc
Confidence            35555555 3 345889999999999999998888888876654  22334444432          2356789999999


Q ss_pred             CCeEEEEEEEEecCcCCC-CccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCC
Q psy12426        376 GHDYNFRVKAVNKIGESL-PLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP  454 (616)
Q Consensus       376 ~~~y~~~v~a~n~~g~~~-~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~  454 (616)
                      .+.|+|.|.|.|+...-. .......+.+.+....|++...++......++++|+|..|..+++. |..|+|.|.+.+.+
T Consensus       408 h~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~-ildYEvky~ek~~~  486 (996)
T KOG0196|consen  408 HTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGV-ILDYEVKYYEKDED  486 (996)
T ss_pred             ccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCc-ceeEEEEEeecccc
Confidence            999999999999876432 2233556677777888999999999999999999999999888775 99999999988653


Q ss_pred             ceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426        455 WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       455 ~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      ...........+..+|.+|+|++.|.|+|+|++..|.|.+|....+.|..+
T Consensus       487 e~~~~~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~  537 (996)
T KOG0196|consen  487 ERSYSTLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS  537 (996)
T ss_pred             ccceeEEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence            333344455678999999999999999999999999999999988877654

>KOG4194|consensus

Probab=99.71  E-value=9.1e-16  Score=146.04  Aligned_cols=207  Identities=15%  Similarity=0.165  Sum_probs=145.7

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL  251 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~  251 (616)
                      ..|.+.++...|.|.|+|.+.|.+|...+....+.+     ...|.| ...|.++.+..|+.+.|.|.+.|.|.|.|.|.
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV-----~~~PsF-tktP~dltl~tg~mArl~CaAtG~P~PeIawq  647 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTV-----NQAPSF-TKTPEDLTLRTGQMARLECAATGHPRPEIAWQ  647 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeEEEe-----eccCcc-ccCcccceeecccceeeeeeccCCCCcceeeh
Confidence            467899999999999999999999987655433333     356887 56678999999999999999999999999999


Q ss_pred             ECCee-eccc--CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEE
Q psy12426        252 CNDIT-IISK--DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCN  328 (616)
Q Consensus       252 ~~~~~-~~~~--~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~  328 (616)
                      ++|.. ++..  .|+.+.  .....+.|.|+..+|.|.|+|.|.|.+|..++.+.++|.+.|.+...-.......+..+.
T Consensus       648 kdggtdFPAA~eRRl~Vm--pedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~v  725 (873)
T KOG4194|consen  648 KDGGTDFPAARERRLHVM--PEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLV  725 (873)
T ss_pred             hcCCCCCchhhhheeeec--CCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEE
Confidence            98876 4332  344333  233489999999999999999999999999999999999988765531223445678899


Q ss_pred             EEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc---cccccceEEeccccCCCeEEEEEEEEecCcC
Q psy12426        329 LEWRAPRDDGGTDILHYVVEKMDMETGRWVPM---GDVSGTYTRAENLIEGHDYNFRVKAVNKIGE  391 (616)
Q Consensus       329 l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~---~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~  391 (616)
                      |+|..-.....     -++.|.+.+..-....   ......-+.+......+.+.|.|...|..|.
T Consensus       726 lqC~a~~~~a~-----pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~  786 (873)
T KOG4194|consen  726 LQCLAEGAPAD-----PRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGT  786 (873)
T ss_pred             EEEecCCCCCC-----ccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccc
Confidence            99986333211     1223322222111110   1122333455544455566777777777765

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.62  E-value=1.3e-14  Score=111.25  Aligned_cols=93  Identities=33%  Similarity=0.523  Sum_probs=85.8

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      ..+.++.+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+......+.|.|.++...|+|.|+|.|.|..|....
T Consensus         5 ~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~   84 (98)
T cd05762           5 QFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQA   84 (98)
T ss_pred             ECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeE
Confidence            44678899999999999999999999999999999998777888777777789999999999999999999999999999


Q ss_pred             eEEEEEecCCCCC
Q psy12426        301 TAKVTVLDIPSPP  313 (616)
Q Consensus       301 ~~~l~v~~~p~~p  313 (616)
                      ++.|.|.+.|.+|
T Consensus        85 ~~~l~V~~~P~pP   97 (98)
T cd05762          85 QVNLTVVDKPDPP   97 (98)
T ss_pred             EEEEEEecCCCCC
Confidence            9999999999887

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.60  E-value=6.1e-14  Score=124.74  Aligned_cols=109  Identities=16%  Similarity=0.128  Sum_probs=83.2

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEee-----ecCc
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG-----EPIP  246 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-----~p~~  246 (616)
                      ..|.|.+++.+|+|.|+|.|.|..|....+   ..+.+    ..+      +.+..+.+|+.+.|.|.+.+     .|.|
T Consensus        98 ~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~---i~L~V----~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p  164 (227)
T PHA02826         98 ENLWIGNVINIDEGIYICTISSGNICEEST---IRLTF----DSG------TINYQFNSGKDSKLHCYGTDGISSTFKDY  164 (227)
T ss_pred             CeEEECCCChHHCEEEEEEEEECCcceEEE---EEEEE----ecC------CccceEecCCCEEEEeeCCCCccccCCCc
Confidence            379999999999999999999977653321   11222    111      23456788999999999863     3578


Q ss_pred             eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        247 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       247 ~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      .+.|+|++..+..+.++.+...  ...|.|.+++.+|+|.|+|.|....
T Consensus       165 ~I~WyKng~~l~~~~r~~~~~~--~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        165 TLTWYKNGNIVLYTDRIQLRNN--NSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             eEEEEECCEECCCCCCEEEeCC--CCEEEECcCCHHhCEEEEEEEEEeE
Confidence            9999999999876666665533  3489999999999999999999854

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.54  E-value=1.4e-14  Score=108.99  Aligned_cols=82  Identities=17%  Similarity=0.293  Sum_probs=68.4

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|... +.+..+.+|+.|.|.|.+.|+|.|.|+|+|++..+.....+  .                            
T Consensus         1 ~p~i~~~-~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~----------------------------   49 (88)
T cd05851           1 PADINVK-FKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEI--S----------------------------   49 (88)
T ss_pred             CCceEEc-cccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEE--e----------------------------
Confidence            7888855 89999999999999999999999999999999877532211  1                            


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                        .....|.|.++.+.|.|.|.|.|.|..|.....
T Consensus        50 --~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   82 (88)
T cd05851          50 --MSGAVLKIFNIQPEDEGTYECEAENIKGKDKHQ   82 (88)
T ss_pred             --cCCCEEEECcCChhhCEEEEEEEEcCCCceEEE
Confidence              123579999999999999999999999976554

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.51  E-value=4.2e-12  Score=121.15  Aligned_cols=234  Identities=17%  Similarity=0.105  Sum_probs=138.5

Q ss_pred             cCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccC
Q psy12426        135 GTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKV  214 (616)
Q Consensus       135 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~  214 (616)
                      |.|.+.++|++  +++..+        ... .. .....+.|.++..+|+|.|+|.|.|..|....+   ..+.+... .
T Consensus        57 g~p~~~i~W~K--~g~~~~--------~~~-~~-~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s---~~L~V~~~-~  120 (326)
T PHA02785         57 GYNILDILWEK--RGADND--------RII-PI-DNGSNMLILNPTQSDSGIYICITKNETYCDMMS---LNLTIVSV-S  120 (326)
T ss_pred             CCCCceEEEEE--CCCccc--------eEE-Ec-cCCceEEEcccCcccCeEEEEEEECCCcceEEE---EEEEEEec-C
Confidence            66678899999  521111        111 11 123357899999999999999999988764432   12222211 1


Q ss_pred             CCceeccCCcceEEEcCCeEEEEEE-----EeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEE
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDIN-----VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  289 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~-----~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c  289 (616)
                      +|.+. ..+....+.+|..+.|.|.     ..+.+.+.+.|+++.. + ...++.....   ..|.|.+++..|.|.|+|
T Consensus       121 ~~~~~-~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~---~~L~i~~v~~~d~G~Y~C  194 (326)
T PHA02785        121 ESNID-LISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTP---GIITIEDVRKNDAGYYTC  194 (326)
T ss_pred             CCccc-eeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCC---CeEEEeecChhhCeEEEE
Confidence            23221 1223455778999999997     2367888999987643 2 3344443322   389999999999999999


Q ss_pred             EEEcCCCCcee----eEEEEEecCCCCCC--CCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEE--eCCC------C
Q psy12426        290 AVKNSWGTDKG----TAKVTVLDIPSPPE--GPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKM--DMET------G  355 (616)
Q Consensus       290 ~a~n~~g~~~~----~~~l~v~~~p~~p~--~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~--~~~~------~  355 (616)
                      .|.|..|....    .+.+.+..+..+|.  .|.......++.+.|.|.+........ ..+.+...  ....      .
T Consensus       195 ~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~-~~v~W~kng~~i~~~~~~~~~  273 (326)
T PHA02785        195 VLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTD-ADVFWISNGMYYEEDDEDGDG  273 (326)
T ss_pred             EEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCC-ceEEEEECCEECCCcCCCCce
Confidence            99998876533    23344443333331  122233445778999998754332110 11222111  0000      0


Q ss_pred             CEEEccc--------cccceEEeccccCCCeEEEEEEEEecCcC
Q psy12426        356 RWVPMGD--------VSGTYTRAENLIEGHDYNFRVKAVNKIGE  391 (616)
Q Consensus       356 ~~~~~~~--------~~~~~~~i~~L~~~~~y~~~v~a~n~~g~  391 (616)
                      .......        .....+.|.++...+.+.|.|.|.|..|.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~  317 (326)
T PHA02785        274 RISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI  317 (326)
T ss_pred             eEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence            0010000        11346889999999999999999997754

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.49  E-value=1.3e-13  Score=105.87  Aligned_cols=85  Identities=14%  Similarity=0.146  Sum_probs=71.3

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.|. +.|+++.+.+|+.+.|.|.+.|.|+|.|.|+|+|++|.....|.-..                            
T Consensus         1 p~~~-~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~----------------------------   51 (98)
T cd05762           1 PQII-QFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN----------------------------   51 (98)
T ss_pred             CceE-ECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe----------------------------
Confidence            5666 45999999999999999999999999999999999997544443321                            


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ......|.|.++...|+|.|.|.|.|..|.....
T Consensus        52 ~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~   85 (98)
T cd05762          52 TENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQ   85 (98)
T ss_pred             cCCeeEEEECCCChhhCEEEEEEEEcCCCceeEE
Confidence            1224689999999999999999999999987765

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.49  E-value=1.9e-13  Score=104.32  Aligned_cols=86  Identities=17%  Similarity=0.301  Sum_probs=71.0

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||+|. ..|++..+.+|+++.|.|.+.|+|.|.+.|+|+|..+....+|.-.-                           
T Consensus         3 ~~~~~-~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~---------------------------   54 (92)
T cd05747           3 PATIL-TKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS---------------------------   54 (92)
T ss_pred             CCccc-ccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE---------------------------
Confidence            68887 45899999999999999999999999999999998876545543321                           


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                       ......|.|.++...|.|.|.|.|.|..|.....
T Consensus        55 -~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   88 (92)
T cd05747          55 -TEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQ   88 (92)
T ss_pred             -cCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEE
Confidence             1224689999999999999999999999976543

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>KOG3515|consensus

Probab=99.47  E-value=6.3e-11  Score=119.42  Aligned_cols=352  Identities=12%  Similarity=-0.001  Sum_probs=176.5

Q ss_pred             EEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeec-CceeEEEE
Q psy12426        174 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP-IPTKEWLC  252 (616)
Q Consensus       174 l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p-~~~~~W~~  252 (616)
                      +.+..+...+.+.|.|.|.+.......+.    .........|.+...........+.+.......+.+.| .+.+.|..
T Consensus       363 ~~~q~~~~~~~g~v~c~a~~~~~~~~sss----~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~  438 (741)
T KOG3515|consen  363 HYAQPSSQQDGGQVTCPADNLELAHSSSS----SFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTF  438 (741)
T ss_pred             eeecccchhcCceEEcccccccccccccc----ceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhhee
Confidence            44556677899999999988764422221    22222234454433333334444555444444444554 45899999


Q ss_pred             CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEe
Q psy12426        253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWR  332 (616)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~  332 (616)
                      ++..+.......+..........+.++...|.|.|.|.|.|..|.......+.+...|..-..........++++...|.
T Consensus       439 ~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~  518 (741)
T KOG3515|consen  439 RLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECM  518 (741)
T ss_pred             cceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceee
Confidence            88887655443333333333455667888999999999999999887766655555443222112223333444444443


Q ss_pred             CCCCCCCCceEEEEEEEEeCCCCCEEEc------cccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCC
Q psy12426        333 APRDDGGTDILHYVVEKMDMETGRWVPM------GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP  406 (616)
Q Consensus       333 ~~~~~~~~~i~~y~v~~~~~~~~~~~~~------~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~  406 (616)
                      .  .... ....+.-+.+......-...      .......+.+.+-.....|.+.|.+.+   .+.++.....+.+...
T Consensus       519 q--~~~~-~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~~pA~~~~~l~~~s~  592 (741)
T KOG3515|consen  519 Q--DEQP-QDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG---SSPPAGLSLVLKAYSA  592 (741)
T ss_pred             c--cccc-cchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecC---CCCccccceEEEeccc
Confidence            2  1111 11111111111000000000      001122333333333444555555544   1222211122221111


Q ss_pred             CCCCCCCCCCEEE------------EecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCC
Q psy12426        407 FGRPDRPGQPTVT------------DWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDL  473 (616)
Q Consensus       407 ~~~p~~p~~~~~~------------~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L  473 (616)
                      ...-..+.++...            ....-+....|..-. .+-.. ...|..-+..      .    ..+..+-.+-+-
T Consensus       593 ~~v~~~tp~~~~~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~-~~~~~~~~~~------~----~~~s~~~~~~~~  661 (741)
T KOG3515|consen  593 LIVTVRTPNMYTAQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEG-PHIREKATQQ------G----QTHSSSEWILNH  661 (741)
T ss_pred             ccccccCCceeeeccCcccccccceecccccceeecccCCCcccCC-ceEEEeeeec------c----ccccccccccCC
Confidence            1100111111111            112234445555321 11111 1111111111      1    011112223345


Q ss_pred             CCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeee
Q psy12426        474 KEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYI  553 (616)
Q Consensus       474 ~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (616)
                      .++..|.+.|.+.|..|.+..+..+...                                                    
T Consensus       662 ~~~~~y~~~c~t~n~lg~~~v~~~~~~~----------------------------------------------------  689 (741)
T KOG3515|consen  662 IDGSDYENGCTTQNLLGSDHVSGAIHSG----------------------------------------------------  689 (741)
T ss_pred             cchhhhcceeeecccCCCccccceecCC----------------------------------------------------
Confidence            5788899999999999998877654432                                                    


Q ss_pred             ecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCC
Q psy12426        554 DNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG  601 (616)
Q Consensus       554 ~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~  601 (616)
                       +.++.|.++...+.+..+|.|.|.+-. + +|--..|.+.|...+..
T Consensus       690 -t~~~~~~n~~~~~~~~~~i~l~~~p~f-d-gg~~q~f~~~~~~~~~~  734 (741)
T KOG3515|consen  690 -TASVGPINLTYDNLTYSTISLEWMPGF-D-GGLQQRFFLKYYDLGTM  734 (741)
T ss_pred             -cCCCCccceEeeeeeeeeeceeeeecc-c-cccccceeeehhhcCCc
Confidence             457889999999999999999999643 3 57778899998866654

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.43  E-value=8.1e-13  Score=100.69  Aligned_cols=83  Identities=17%  Similarity=0.312  Sum_probs=68.1

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      ..-|..+.+.+|+++.|.|.+.|.|.|.|.|+|+++.+.....|.....+                           ...
T Consensus         5 ~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~---------------------------~~~   57 (92)
T cd05737           5 GGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQ---------------------------GKY   57 (92)
T ss_pred             ccCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcC---------------------------CCE
Confidence            34567789999999999999999999999999999998766666554211                           113


Q ss_pred             CceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .+|.|.++...|.|.|.|.|.|..|.....
T Consensus        58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05737          58 ASLTIKGVSSEDSGKYGIVVKNKYGGETVD   87 (92)
T ss_pred             EEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence            479999999999999999999999976543

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.42  E-value=4.5e-12  Score=96.68  Aligned_cols=89  Identities=26%  Similarity=0.457  Sum_probs=76.9

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +|.| ...+.+..+..|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+........|.|.++...|.|.|+|.|.|.
T Consensus         3 ~~~~-~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           3 PATI-LTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCcc-cccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            4555 345678999999999999999999999999999999887777777766666679999999999999999999999


Q ss_pred             CCCceeeEEE
Q psy12426        295 WGTDKGTAKV  304 (616)
Q Consensus       295 ~g~~~~~~~l  304 (616)
                      .|....++.|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9988776654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.40  E-value=2.8e-12  Score=96.41  Aligned_cols=86  Identities=26%  Similarity=0.411  Sum_probs=70.7

Q ss_pred             CceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       216 P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      |.|. ..+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+....++..  .  ...|.|.+++.+|.|.|+|.|.|..
T Consensus         2 p~i~-~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~--~--~~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           2 ADIN-VKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM--S--GAVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CceE-EccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec--C--CCEEEECcCChhhCEEEEEEEEcCC
Confidence            5553 345678899999999999999999999999999887755443332  2  2389999999999999999999999


Q ss_pred             CCceeeEEEEE
Q psy12426        296 GTDKGTAKVTV  306 (616)
Q Consensus       296 g~~~~~~~l~v  306 (616)
                      |.....+.|.|
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd05851          77 GKDKHQARVYV   87 (88)
T ss_pred             CceEEEEEEEE
Confidence            99888887766

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.40  E-value=9.4e-13  Score=99.62  Aligned_cols=82  Identities=17%  Similarity=0.227  Sum_probs=66.4

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.++...|.+..+.+|+.+.|.|.+.|+|.|.|+|+|++..+...+.+.                               
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-------------------------------   49 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-------------------------------   49 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-------------------------------
Confidence            3344456899999999999999999999999999999987654333221                               


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                       .....|.|.+++..|+|.|.|.|.|..|.....
T Consensus        50 -~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   82 (88)
T cd04968          50 -MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQ   82 (88)
T ss_pred             -EeCCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence             124689999999999999999999999976544

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.40  E-value=1e-12  Score=101.47  Aligned_cols=85  Identities=18%  Similarity=0.291  Sum_probs=66.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--Ceeeee-----ccceEEEeecCCCCCceeEeeeccCCcc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHP   73 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p   73 (616)
                      +|+|.  .++++.+.+|+.++|.|.+.|.|.|.|+|+|+  +..+..     .++|....                    
T Consensus         2 ~p~i~--~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~--------------------   59 (98)
T cd05870           2 QPHII--QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKG--------------------   59 (98)
T ss_pred             CCEEE--eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEee--------------------
Confidence            58886  48899999999999999999999999999995  333321     23333221                    


Q ss_pred             ceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         74 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        74 ~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                              ......|.|.++.+.|+|.|.|.|.|..|....+
T Consensus        60 --------~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   93 (98)
T cd05870          60 --------QHGESSLHIKDVKLSDSGRYDCEAASRIGGHQKS   93 (98)
T ss_pred             --------cCCeeEEEEeeCCcCCCEEEEEEEeccCCcceeE
Confidence                    1123579999999999999999999999976554

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.40  E-value=1.5e-12  Score=98.87  Aligned_cols=84  Identities=19%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      |..++|+++++.+|+.+.|.|.+.|+|.|.|.|+|+|..+...+.+.-.  +                          ..
T Consensus         2 ~~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~--~--------------------------~~   53 (90)
T cd04972           2 IPVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE--T--------------------------TV   53 (90)
T ss_pred             ccccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE--e--------------------------cC
Confidence            4457789999999999999999999999999999999877532221000  0                          11


Q ss_pred             CCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ....|.|.++.+.|.|.|.|.|.|..|....+
T Consensus        54 ~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~   85 (90)
T cd04972          54 DIYNLQLSNITSETQTTVTCTAENPVGQANVS   85 (90)
T ss_pred             CEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence            23579999999999999999999999976554

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.39  E-value=2e-12  Score=98.59  Aligned_cols=82  Identities=15%  Similarity=0.205  Sum_probs=64.1

Q ss_pred             CccCCCCCCceEec---CCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          2 PHIDRRHLGDIKLS---AGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         2 P~i~~~~~~~~~v~---~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      |.+.. .|.++.+.   +|+.+.|.|.+.|.|.|.|+|+|+|..|...+.+.+..                         
T Consensus         2 P~f~~-~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~-------------------------   55 (94)
T cd05848           2 PVFVQ-EPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL-------------------------   55 (94)
T ss_pred             CeeEE-CCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe-------------------------
Confidence            66664 48887765   47899999999999999999999999887444443332                         


Q ss_pred             cccCCCCCceEecCcc-cCCeEEEEEEEEcCCCCCCC
Q psy12426         79 AQTEGDTPKGKVLDLI-EGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~-~~~~~~y~c~a~n~~g~~~~  114 (616)
                           ....|.|.++. +.|.|.|+|.|.|..|....
T Consensus        56 -----~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          56 -----IDGNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             -----eCCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence                 13578888874 69999999999999996643

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.39  E-value=8e-12  Score=93.29  Aligned_cols=83  Identities=29%  Similarity=0.524  Sum_probs=71.9

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+........|.|.++.+.|+|.|+|.|.|..|....+.
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~   82 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL   82 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence            3567889999999999999999999999999988653 467776666677999999999999999999999999988777


Q ss_pred             EEEE
Q psy12426        303 KVTV  306 (616)
Q Consensus       303 ~l~v  306 (616)
                      .|.|
T Consensus        83 ~l~V   86 (86)
T cd05894          83 FVKV   86 (86)
T ss_pred             EEEC
Confidence            6653

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.39  E-value=7.7e-12  Score=95.29  Aligned_cols=86  Identities=26%  Similarity=0.475  Sum_probs=73.0

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      ..+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++...|+|.|+|.|.|..|...
T Consensus         6 ~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   85 (92)
T cd05737           6 GLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET   85 (92)
T ss_pred             cCCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence            345667899999999999999999999999999998877777666544 4456899999999999999999999999888


Q ss_pred             eeEEEEE
Q psy12426        300 GTAKVTV  306 (616)
Q Consensus       300 ~~~~l~v  306 (616)
                      ..+.+.|
T Consensus        86 ~~~~v~v   92 (92)
T cd05737          86 VDVTVSV   92 (92)
T ss_pred             EEEEEeC
Confidence            7776653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.39  E-value=2.4e-12  Score=97.74  Aligned_cols=83  Identities=16%  Similarity=0.261  Sum_probs=69.3

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      ...|..+.+.+|+++.|.|.+.|.|.|.+.|+|+++.+...+.|.....+                           ...
T Consensus         5 ~~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~---------------------------~~~   57 (92)
T cd05891           5 GGLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQ---------------------------GKY   57 (92)
T ss_pred             ccCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcC---------------------------CCE
Confidence            34588999999999999999999999999999999988766666655321                           112


Q ss_pred             CceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .+|.|.++.+.|.|.|.|.|.|..|.....
T Consensus        58 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891          58 ASLTIKGVTSEDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             EEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence            479999999999999999999999987655

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.38  E-value=2.9e-12  Score=95.70  Aligned_cols=78  Identities=22%  Similarity=0.305  Sum_probs=63.8

Q ss_pred             CceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426         10 GDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      ..+.+.+|+.+.|.|.+.|.|.|.|.|+|+++++.. .++|.-..                            ......|
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~----------------------------~~~~~~L   54 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVES----------------------------YKDLSSF   54 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEE----------------------------cCCeEEE
Confidence            467899999999999999999999999999998874 34443321                            1124689


Q ss_pred             EecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .|.++.+.|+|.|.|.|.|..|.....
T Consensus        55 ~I~~~~~~D~G~Y~c~a~N~~G~~~~~   81 (86)
T cd05894          55 VIEGAEREDEGVYTITVTNPVGEDHAS   81 (86)
T ss_pred             EECCCccCcCEEEEEEEEeCCCcEEEE
Confidence            999999999999999999999976543

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.38  E-value=2.1e-12  Score=96.64  Aligned_cols=77  Identities=22%  Similarity=0.361  Sum_probs=65.7

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      ..|++..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+...+.+...                                ..
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~--------------------------------~~   51 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE--------------------------------AG   51 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe--------------------------------CC
Confidence            4689999999999999999999999999999999988754444322                                35


Q ss_pred             ceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.++...|.|.|+|.|.|..|....+
T Consensus        52 ~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   80 (85)
T cd05728          52 DLRITKLSLSDSGMYQCVAENKHGTIYAS   80 (85)
T ss_pred             EEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence            78999999999999999999999975443

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.37  E-value=5e-12  Score=90.83  Aligned_cols=73  Identities=22%  Similarity=0.404  Sum_probs=64.5

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      |+.+.|.|.+.|.|.|.+.|++++..+..+.++.+...+   +|.|.+++..|.|.|+|.|.|..|....++.|.+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            678999999999999999999999888777777775544   8999999999999999999999999988887764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.37  E-value=1.5e-12  Score=93.49  Aligned_cols=68  Identities=16%  Similarity=0.292  Sum_probs=58.0

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG   96 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~   96 (616)
                      |+++.|.|.+.|.|.|.|+|+|++..+...++|.-.                               ...+|.|.++++.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~-------------------------------~~g~L~I~~v~~~   49 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW-------------------------------DDGSLEILNITKL   49 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc-------------------------------CCCEEEECcCChh
Confidence            789999999999999999999999877655555322                               2458999999999


Q ss_pred             CeEEEEEEEEcCCCCCCCC
Q psy12426         97 NQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        97 ~~~~y~c~a~n~~g~~~~~  115 (616)
                      |.|.|+|.|.|..|....+
T Consensus        50 D~G~Y~C~A~N~~G~~~~~   68 (73)
T cd05852          50 DEGSYTCFAENNRGKANST   68 (73)
T ss_pred             HCEEEEEEEECCCCceeEE
Confidence            9999999999999987655

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.36  E-value=1.7e-12  Score=94.38  Aligned_cols=69  Identities=22%  Similarity=0.315  Sum_probs=57.3

Q ss_pred             CCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc
Q psy12426         16 AGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE   95 (616)
Q Consensus        16 ~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~   95 (616)
                      +|+++.|.|.+.|+|.|.|+|+|+|..+.....+.-                               .....|.|.++.+
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~-------------------------------~~~~~L~I~~v~~   49 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV-------------------------------LSSGTLRISRVAL   49 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEE-------------------------------ccCCeEEEeeCCH
Confidence            699999999999999999999999998764333211                               1245899999999


Q ss_pred             CCeEEEEEEEEcCCCCCCCC
Q psy12426         96 GNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        96 ~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.|.|.|.|..|....+
T Consensus        50 ~D~G~Y~C~A~N~~G~~~~~   69 (74)
T cd05745          50 HDQGQYECQAVNIVGSQRTV   69 (74)
T ss_pred             HhCEEEEEEEEeCCCceeEE
Confidence            99999999999999976544

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.36  E-value=4.7e-12  Score=97.44  Aligned_cols=85  Identities=22%  Similarity=0.399  Sum_probs=67.6

Q ss_pred             CCccCCCC-CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeec-cceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          1 APHIDRRH-LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLR-PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         1 ~P~i~~~~-~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~-G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      ||.|...+ +.++.+..|+.+.|.|.+.|.|.|.|.|+|+|..+... ..|.-.                          
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--------------------------   54 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--------------------------   54 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--------------------------
Confidence            78887553 34668999999999999999999999999999987643 222111                          


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                          .....|.|.++...|.|.|.|.|.|..|.....
T Consensus        55 ----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (95)
T cd05730          55 ----EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAE   87 (95)
T ss_pred             ----CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence                123569999999999999999999999976544

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.35  E-value=2.7e-12  Score=99.26  Aligned_cols=85  Identities=15%  Similarity=0.222  Sum_probs=67.2

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-----ccceEEEeecCCCCCceeEeeeccCCccce
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIW   75 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w   75 (616)
                      +|+|.  .+.+..+.+|+++.|.|.+.|.|.|.|+|+|++..+..     .|+|....                      
T Consensus         2 ~P~i~--~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----------------------   57 (96)
T cd05732           2 QPKIT--YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRG----------------------   57 (96)
T ss_pred             Cccce--ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeC----------------------
Confidence            58886  47789999999999999999999999999999866542     23332110                      


Q ss_pred             eeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                            ......|.|.++...|.|.|.|.|.|..|....+
T Consensus        58 ------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s   91 (96)
T cd05732          58 ------HARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQS   91 (96)
T ss_pred             ------CccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEE
Confidence                  1123579999999999999999999999976544

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.35  E-value=1.6e-11  Score=92.28  Aligned_cols=83  Identities=28%  Similarity=0.494  Sum_probs=70.4

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEe--cCC--ceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVN--DDK--STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~--~~~--~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      |+.+.|.|.+.|.|.+.+.|++++..+... .++.+..  .+.  .+.|.|.++...|.|.|+|.|.|..|.......|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            678999999999999999999999877543 3555442  122  36899999999999999999999999999999999


Q ss_pred             EecCCCCC
Q psy12426        306 VLDIPSPP  313 (616)
Q Consensus       306 v~~~p~~p  313 (616)
                      |..+|.+|
T Consensus        81 V~~~P~~P   88 (88)
T cd05735          81 VQEPPDPP   88 (88)
T ss_pred             EeCCCCCC
Confidence            99988876

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.35  E-value=4.7e-12  Score=92.56  Aligned_cols=72  Identities=24%  Similarity=0.340  Sum_probs=57.8

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      +.|+++.|.+|+.+.|+|.+.|+|.| .|.|+|||.++..  .+                                ....
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~--------------------------------~~~~   48 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PP--------------------------------APSP   48 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CC--------------------------------CCCC
Confidence            46899999999999999999999999 7999999998762  11                                1123


Q ss_pred             CceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                      ..|.|.++.  |.|.|+|.|.|..|....
T Consensus        49 s~L~i~~~~--d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          49 SVLNVPGLN--ETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence            467777764  678999999999996543

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.34  E-value=2.3e-11  Score=92.26  Aligned_cols=85  Identities=18%  Similarity=0.255  Sum_probs=70.4

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      .+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++...|.|.|+|.|.|..|....+
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~   85 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS   85 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence            34567799999999999999999999999999988765444333334445689999999999999999999999998887


Q ss_pred             EEEEE
Q psy12426        302 AKVTV  306 (616)
Q Consensus       302 ~~l~v  306 (616)
                      +.|.+
T Consensus        86 ~~L~v   90 (90)
T cd04972          86 VQVTV   90 (90)
T ss_pred             EEEeC
Confidence            77653

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.34  E-value=7.9e-12  Score=90.79  Aligned_cols=74  Identities=22%  Similarity=0.363  Sum_probs=63.4

Q ss_pred             cCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        230 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       230 ~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +|+.+.|.|.+.|.|.|.+.|++++..+....++.+...   ..|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSS---GTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccC---CeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            588999999999999999999999998766555554433   38999999999999999999999999888877654

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.32  E-value=1.7e-11  Score=88.36  Aligned_cols=73  Identities=22%  Similarity=0.378  Sum_probs=61.5

Q ss_pred             EEEEEEEeeecCceeEEEECCeeecc-cCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.|.+.|.|.|.+.|+|++..+.. ..++.+... .+..+|.|.++...|.|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            46899999999999999999998864 356666544 33458999999999999999999999999988887764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.32  E-value=2.3e-11  Score=92.91  Aligned_cols=86  Identities=30%  Similarity=0.536  Sum_probs=78.3

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      ..+.++.+..|+++.|.|.+.+.|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..|....
T Consensus         5 ~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~   84 (90)
T PF07679_consen    5 KKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEATA   84 (90)
T ss_dssp             EESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEEEE
T ss_pred             EecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEEEE
Confidence            34578899999999999999999999999999999999888898888888899999999999999999999999888888


Q ss_pred             eEEEEE
Q psy12426        301 TAKVTV  306 (616)
Q Consensus       301 ~~~l~v  306 (616)
                      .+.|.|
T Consensus        85 ~~~l~V   90 (90)
T PF07679_consen   85 SVNLTV   90 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            777764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.31  E-value=6.6e-12  Score=95.89  Aligned_cols=84  Identities=18%  Similarity=0.447  Sum_probs=70.8

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |+|. ..+.++.+.+|+.+.|.|.+.|.|.|.|.|+++|..+...+.|.-...                           
T Consensus         1 P~~~-~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~---------------------------   52 (90)
T PF07679_consen    1 PVFT-KKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESD---------------------------   52 (90)
T ss_dssp             EEEE-EESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEE---------------------------
T ss_pred             CEEE-EecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecc---------------------------
Confidence            5666 448999999999999999999999999999999999987666654421                           


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                       .....|.|.++...|.|.|.|.|.|..|....
T Consensus        53 -~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~   84 (90)
T PF07679_consen   53 -GGSSSLTIKNVTREDAGTYTCVASNSSGEATA   84 (90)
T ss_dssp             -TTEEEEEESSESGGGSEEEEEEEEETTEEEEE
T ss_pred             -cceeEEccCCCChhhCEEEEEEEEECCCEEEE
Confidence             13578999999999999999999999886543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.31  E-value=4.1e-12  Score=92.55  Aligned_cols=70  Identities=19%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG   96 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~   96 (616)
                      |+.+.|.|.+.|+|.|.|+|+|+|+++.........                             ......|.|.++++.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~-----------------------------~~~~~~l~i~~v~~~   51 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSR-----------------------------KVDGDTIIFSKVQER   51 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceE-----------------------------EecCCEEEECCCCHh
Confidence            789999999999999999999999988632111111                             012347889999999


Q ss_pred             CeEEEEEEEEcCCCCCCCC
Q psy12426         97 NQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        97 ~~~~y~c~a~n~~g~~~~~  115 (616)
                      |.|.|+|.|.|..|....+
T Consensus        52 D~G~Y~C~A~N~~G~~~~~   70 (76)
T cd05868          52 SSAVYQCNASNEYGYLLAN   70 (76)
T ss_pred             hCEEEEEEEEcCCCEEEEE
Confidence            9999999999999977655

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.31  E-value=8.3e-12  Score=94.62  Aligned_cols=81  Identities=11%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             CCccCCCCCCceEecCCC---eEEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426          1 APHIDRRHLGDIKLSAGT---TLKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~---~v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      +|.+.. .|.++.+.++.   .+.|.|.+.|+|.|.|+|+|++..+.. .+.|  ..                       
T Consensus         1 ~P~f~~-~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~--~~-----------------------   54 (93)
T cd05849           1 GPVFEE-QPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRY--SM-----------------------   54 (93)
T ss_pred             CCEEEE-CCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeE--EE-----------------------
Confidence            467774 48888777665   899999999999999999999988753 2333  21                       


Q ss_pred             eccccCCCCCceEecCcc-cCCeEEEEEEEEcCCCCCCC
Q psy12426         77 KCAQTEGDTPKGKVLDLI-EGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~-~~~~~~y~c~a~n~~g~~~~  114 (616)
                             ....|.|.++. ..|.|.|+|.|.|..|....
T Consensus        55 -------~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          55 -------VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             -------ECCEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence                   13578888885 68999999999999996543

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.30  E-value=5.9e-12  Score=96.58  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=63.5

Q ss_pred             CCceEecCCCeEEEEEEEee-ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426          9 LGDIKLSAGTTLKFDANIIG-EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      -..+.+.+|++++|.|.+.| .|+|.|.|+|||.+|...+.+.-...+.                       ........
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~-----------------------~~~~~~~~   66 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENE-----------------------SEYRYVSE   66 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEecc-----------------------CcceEEEE
Confidence            45788999999999999999 9999999999999987433322221100                       00011367


Q ss_pred             eEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                      |.|..+.+.|.|.|.|.|.|..|....
T Consensus        67 L~i~~v~~~D~G~Ytc~A~N~~G~~~~   93 (101)
T cd04975          67 LKLVRLKESEAGTYTFLASNSDASKSL   93 (101)
T ss_pred             EEEeecCHhhCeeEEEEEECCCccEEE
Confidence            999999999999999999999996543

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.30  E-value=1.6e-11  Score=93.66  Aligned_cols=82  Identities=12%  Similarity=0.249  Sum_probs=62.8

Q ss_pred             CccCCCCCCceEecCC---CeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          2 PHIDRRHLGDIKLSAG---TTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g---~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      |.+. +.|+++.+.+|   ++|.|.|.+.|+|.|.|+|+|+|..+..........                         
T Consensus         2 P~f~-~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-------------------------   55 (94)
T cd05850           2 PVFE-EQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-------------------------   55 (94)
T ss_pred             CeeE-ECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-------------------------
Confidence            6666 45999988777   589999999999999999999999886422211111                         


Q ss_pred             cccCCCCCceEecCcc-cCCeEEEEEEEEcCCCCCCC
Q psy12426         79 AQTEGDTPKGKVLDLI-EGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~-~~~~~~y~c~a~n~~g~~~~  114 (616)
                           ..+.|.|.++. ..|.|.|+|.|.|..|....
T Consensus        56 -----~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          56 -----VAGNLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             -----ECCeEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence                 13568887765 59999999999999996543

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.30  E-value=8.8e-12  Score=89.81  Aligned_cols=69  Identities=14%  Similarity=0.209  Sum_probs=54.6

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ   98 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~   98 (616)
                      |.|.|.+.|.|.|.|.|+|++..|.. ..+|+....+                           ....+|.|.++...|.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~---------------------------~g~~~L~I~~~~~~D~   53 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDN---------------------------SGRVTLLIKNVNKKDA   53 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcC---------------------------CCcEEEEECCCChhhC
Confidence            58999999999999999999998874 3444433211                           1124799999999999


Q ss_pred             EEEEEEEEcCCCCCCCC
Q psy12426         99 YEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        99 ~~y~c~a~n~~g~~~~~  115 (616)
                      |.|.|.|.|..|.....
T Consensus        54 G~Y~C~A~N~~G~~~~~   70 (75)
T cd05892          54 GWYTVSAVNEAGVATCH   70 (75)
T ss_pred             EEEEEEEEcCcCeEEEE
Confidence            99999999999976544

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.30  E-value=9.6e-12  Score=95.86  Aligned_cols=86  Identities=14%  Similarity=0.208  Sum_probs=64.9

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-----ccceEEEeecCCCCCceeEeeeccCCccce
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIW   75 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w   75 (616)
                      .|+|... +....+..|+.++|.|.+.|.|.|.|+|+|++..+..     .|+|.-..                      
T Consensus         2 ~p~i~~~-~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~----------------------   58 (97)
T cd05869           2 KPKITYV-ENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRS----------------------   58 (97)
T ss_pred             CceEEEc-cCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEc----------------------
Confidence            4888633 5555566689999999999999999999999877642     12221110                      


Q ss_pred             eeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                            ......|.|.++...|.|.|.|.|.|..|....+
T Consensus        59 ------~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   92 (97)
T cd05869          59 ------HARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQS   92 (97)
T ss_pred             ------CccEEEEEEecCccCcCEEEEEEEecCCCCeeEE
Confidence                  1123579999999999999999999999977554

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.30  E-value=4.4e-11  Score=87.06  Aligned_cols=73  Identities=32%  Similarity=0.519  Sum_probs=65.1

Q ss_pred             EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.|.+.|.|.|.+.|++++..+..+.++.+........|.|.++...|+|.|+|.|.|..|....++.+.|
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            6799999999999999999999987777777777667789999999999999999999999999888777654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.29  E-value=1.2e-11  Score=90.41  Aligned_cols=67  Identities=19%  Similarity=0.334  Sum_probs=55.3

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeeeeecc---ceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCc
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRP---IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDL   93 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G---~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l   93 (616)
                      |+++.|.|.+.|.|.|.|+|+|+|..+....   .|.                                .....|.|.++
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~--------------------------------~~~~~L~I~~~   48 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH--------------------------------VSSGALILTDV   48 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE--------------------------------eeCCEEEECCC
Confidence            7899999999999999999999999876421   221                                12467999999


Q ss_pred             ccCCeEEEEEEEEcCCCCCCCC
Q psy12426         94 IEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        94 ~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ++.|.|.|.|.|.|..|.....
T Consensus        49 ~~~D~G~Y~C~a~N~~G~~~~~   70 (76)
T cd05867          49 QPSDTAVYQCEARNRHGNLLAN   70 (76)
T ss_pred             ChhhCEEEEEEEECCCCeEEEE
Confidence            9999999999999999975443

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.29  E-value=4e-11  Score=91.99  Aligned_cols=84  Identities=24%  Similarity=0.347  Sum_probs=70.2

Q ss_pred             cceEEEcCCeEEEEEEEee-ecCceeEEEECCeeecccCcEEEEecC-----CceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        224 SDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDD-----KSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      ..+.+..|+.+.|.|.+.| .|.|.+.|+|+|..+.......+...+     ..+.|.|..+.++|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            5678899999999999999 899999999999988755444333221     2468999999999999999999999999


Q ss_pred             ceeeEEEEEe
Q psy12426        298 DKGTAKVTVL  307 (616)
Q Consensus       298 ~~~~~~l~v~  307 (616)
                      ....+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            8888887764

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.29  E-value=9.8e-12  Score=94.54  Aligned_cols=80  Identities=14%  Similarity=0.238  Sum_probs=61.7

Q ss_pred             CCceEecCCCeEEEEEEEeeecC-Ceeeeee-CCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPV-PHVDWRA-GGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~-p~v~W~~-~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      |.+..+.+|+++.|.|.+.|.|. |.|+|+| ++..+.. ..+|.-...                           ....
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~---------------------------~~~~   59 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRN---------------------------DDYS   59 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeC---------------------------CCCc
Confidence            77778999999999999999995 7999998 7776654 223332211                           1113


Q ss_pred             CceEecCcccCCeEEEEEEEEcCC-CCCCCC
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKG-GPGEPS  115 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~-g~~~~~  115 (616)
                      ..|.|.++.+.|.|.|+|.|.|.. |.+..+
T Consensus        60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s   90 (96)
T cd05865          60 STLTIYNANIDDAGIYKCVVSNEDEGESEAT   90 (96)
T ss_pred             eEEEEeccChhhCEEEEEEEEcCCCCcEEEE
Confidence            589999999999999999999986 665544

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.29  E-value=6.2e-11  Score=91.18  Aligned_cols=84  Identities=18%  Similarity=0.344  Sum_probs=70.1

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      ..+..+..|+.+.|.|.+.|.|.+.+.|++++..+... .++...  .....|.|.++...|.|.|+|.|.|..|....+
T Consensus        10 ~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (95)
T cd05730          10 EVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN--EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAE   87 (95)
T ss_pred             ccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe--CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEE
Confidence            34567889999999999999999999999999887654 344333  233479999999999999999999999998888


Q ss_pred             EEEEEec
Q psy12426        302 AKVTVLD  308 (616)
Q Consensus       302 ~~l~v~~  308 (616)
                      +.|.|..
T Consensus        88 ~~L~V~~   94 (95)
T cd05730          88 IHLKVFA   94 (95)
T ss_pred             EEEEEEe
Confidence            8887753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.29  E-value=7.8e-12  Score=87.27  Aligned_cols=60  Identities=15%  Similarity=0.282  Sum_probs=50.8

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY   99 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~   99 (616)
                      ++|.|.+.|.|.|.++|+|||++|...                                    .....|.|.++...|.|
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------------------------------------~~~~~L~i~~v~~~D~G   44 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK------------------------------------HSQHSLQIKDVTEASAG   44 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc------------------------------------CCcCEEEECCCCHHHCE
Confidence            579999999999999999999988621                                    12458999999999999


Q ss_pred             EEEEEEEcCCCCCCCC
Q psy12426        100 EFRVLAVNKGGPGEPS  115 (616)
Q Consensus       100 ~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.|.|..|....+
T Consensus        45 ~YtC~a~N~~g~~~~~   60 (67)
T cd05863          45 TYTLVLWNSAAGLEKR   60 (67)
T ss_pred             EEEEEEEECCccEEEE
Confidence            9999999999965433

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=99.29  E-value=1e-11  Score=93.81  Aligned_cols=84  Identities=35%  Similarity=0.622  Sum_probs=70.4

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCc-eEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPW-EKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~-~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      ++|.++++..++.+++.|.|..|. ..+..+.+|.|+|+..++.. ............++|.+|.|++.|.|+|+|+|..
T Consensus         1 s~P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~   79 (85)
T PF00041_consen    1 SAPENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD   79 (85)
T ss_dssp             SSSEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred             CcCcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence            367889999999999999999876 55667999999999887732 3334455667799999999999999999999999


Q ss_pred             CCCCCC
Q psy12426        490 GPGEPS  495 (616)
Q Consensus       490 G~g~~s  495 (616)
                      |.|++|
T Consensus        80 g~g~~S   85 (85)
T PF00041_consen   80 GEGPPS   85 (85)
T ss_dssp             EEEEEE
T ss_pred             cCcCCC
Confidence            988764

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.28  E-value=6.6e-11  Score=89.48  Aligned_cols=83  Identities=22%  Similarity=0.330  Sum_probs=68.7

Q ss_pred             ccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       220 ~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      ...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........    ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus         5 ~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   80 (88)
T cd04968           5 VVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISM----SGAVLKIPNIQFEDEGTYECEAENIKGKDT   80 (88)
T ss_pred             EECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEE----eCCEEEECCCCcccCEEEEEEEEECCCcEE
Confidence            4445778889999999999999999999999998876654433321    224899999999999999999999999988


Q ss_pred             eeEEEEE
Q psy12426        300 GTAKVTV  306 (616)
Q Consensus       300 ~~~~l~v  306 (616)
                      ....|.|
T Consensus        81 ~~~~l~V   87 (88)
T cd04968          81 HQGRIYV   87 (88)
T ss_pred             EEEEEEE
Confidence            8877765

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.28  E-value=1.2e-11  Score=96.88  Aligned_cols=86  Identities=20%  Similarity=0.286  Sum_probs=61.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee----ccceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      ||.|... |.++.+.+|+.+.|.|.+.|+|.|.|+|+|+|..+..    .+.......+                     
T Consensus         1 ~P~i~~~-p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~---------------------   58 (100)
T cd07693           1 PPRIVEH-PSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPS---------------------   58 (100)
T ss_pred             CCeEEec-CceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecC---------------------
Confidence            7888854 8999999999999999999999999999999988763    1111111000                     


Q ss_pred             eccccCCCCCceEe--cCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         77 KCAQTEGDTPKGKV--LDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        77 ~~~~~~~~~~~l~i--~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                            .....+.+  ..+...|.|.|.|.|.|..|....
T Consensus        59 ------~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s   92 (100)
T cd07693          59 ------GSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVS   92 (100)
T ss_pred             ------CcEEEEEeeccCCCcCcCEEEEEEEEccccceec
Confidence                  00111122  234689999999999999997543

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.28  E-value=2.5e-11  Score=93.73  Aligned_cols=89  Identities=18%  Similarity=0.208  Sum_probs=68.2

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      ||.|. . +..+.+.+|+.+.|.|.+.|.|.| .|.|++++..+..  .++|.-.....                     
T Consensus         2 pp~i~-~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~---------------------   58 (98)
T cd05758           2 PPIIT-S-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPS---------------------   58 (98)
T ss_pred             CCeEc-C-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecC---------------------
Confidence            67775 3 667889999999999999999999 5999999998864  35665542110                     


Q ss_pred             ccccCCCCCceEecCcccCC-eEEEEEEEEcCCCCCCCC
Q psy12426         78 CAQTEGDTPKGKVLDLIEGN-QYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~-~~~y~c~a~n~~g~~~~~  115 (616)
                         .......|.|.++...| .|.|.|.|.|..|.....
T Consensus        59 ---~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~   94 (98)
T cd05758          59 ---PGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTAI   94 (98)
T ss_pred             ---CCceEEEEEECCccccccceeEEEEEEcCCCcccEE
Confidence               01112479999999955 899999999999986554

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.28  E-value=3.8e-11  Score=86.68  Aligned_cols=73  Identities=26%  Similarity=0.409  Sum_probs=60.9

Q ss_pred             EEEEEEEeeecCceeEEEECCeeecc-cCcEEEEecC-CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.|.+.|.|.|.+.|+|++..+.. ..++.+...+ ....|.|.++.++|.|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            46899999999999999999988764 3566665443 3347999999999999999999999999988887754

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.28  E-value=2.1e-11  Score=91.93  Aligned_cols=82  Identities=13%  Similarity=0.206  Sum_probs=65.0

Q ss_pred             CCccC-CCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHID-RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~-~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      .|.|. -..++++.+.+|++|+|.|.+.|. .|.|.|+|++..+. .+.+.-                            
T Consensus         1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~-~~~~~~----------------------------   50 (91)
T cd05740           1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLV-PPRLQL----------------------------   50 (91)
T ss_pred             CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECC-CCCEEE----------------------------
Confidence            47773 334668899999999999999999 99999999998775 233211                            


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                        ......|.|.++.+.|.|.|+|.|.|..|....
T Consensus        51 --~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          51 --SNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             --eCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence              112458999999999999999999999996543

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.27  E-value=4.6e-11  Score=85.80  Aligned_cols=71  Identities=31%  Similarity=0.606  Sum_probs=60.8

Q ss_pred             eEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        233 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       233 ~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      ++.|.|.+.|.|.|.+.|++++..+....++.+...+   .|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            3679999999999999999999988766666665444   6888899999999999999999999888877754

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.27  E-value=5e-11  Score=89.17  Aligned_cols=81  Identities=27%  Similarity=0.501  Sum_probs=69.3

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      .+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+....++....    ..|.|.++...|.|.|+|.|.|..|....+
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   80 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEA----GDLRITKLSLSDSGMYQCVAENKHGTIYAS   80 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeC----CEEEEeeCCHHHCEEEEEEEECCCCeEEEE
Confidence            3567889999999999999999999999999999887666655432    289999999999999999999999988877


Q ss_pred             EEEEE
Q psy12426        302 AKVTV  306 (616)
Q Consensus       302 ~~l~v  306 (616)
                      +.|.|
T Consensus        81 ~~l~V   85 (85)
T cd05728          81 AELAV   85 (85)
T ss_pred             EEEEC
Confidence            77653

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.27  E-value=7.7e-12  Score=90.30  Aligned_cols=69  Identities=13%  Similarity=0.155  Sum_probs=53.8

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ   98 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~   98 (616)
                      |.|.|.+.|.|.|.|+|+|++..+.. .++|.....+                           .....|.|.++.+.|.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~---------------------------~~~~~L~I~~v~~~D~   53 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDN---------------------------CGYICLLIQGATKEDA   53 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcC---------------------------CCEEEEEECCCCHHHC
Confidence            58999999999999999999998864 3344332110                           0123689999999999


Q ss_pred             EEEEEEEEcCCCCCCCC
Q psy12426         99 YEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        99 ~~y~c~a~n~~g~~~~~  115 (616)
                      |.|.|.|.|..|....+
T Consensus        54 G~Y~C~A~N~~G~~~~~   70 (75)
T cd05893          54 GWYTVSAKNEAGIVSCT   70 (75)
T ss_pred             EEEEEEEEcCCCEEEEE
Confidence            99999999999977554

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>KOG3515|consensus

Probab=99.26  E-value=2.8e-10  Score=114.85  Aligned_cols=414  Identities=12%  Similarity=0.047  Sum_probs=229.2

Q ss_pred             eEecCCCeEEEEEE-EeeecCCeeeeeeCCeeeee--------------------ccceE------EEeecCC-CC----
Q psy12426         12 IKLSAGTTLKFDAN-IIGEPVPHVDWRAGGNPLNL--------------------RPIWE------KCAQTEG-DT----   59 (616)
Q Consensus        12 ~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~l~~--------------------~G~Y~------C~a~n~~-~~----   59 (616)
                      ..+.+|+.++|.|. ..|+|.++++|+++...+..                    .|.+.      |.|.|.. ++    
T Consensus       216 qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~ta  295 (741)
T KOG3515|consen  216 QSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITA  295 (741)
T ss_pred             CcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeee
Confidence            67899999999998 56899999999998655432                    44444      9999921 10    


Q ss_pred             -----------C---------ceeEeeeccCCccc----eeeccccC---------------CCCCceEecCcccCCeEE
Q psy12426         60 -----------P---------KGKVLDLIEGNHPI----WEKCAQTE---------------GDTPKGKVLDLIEGNQYE  100 (616)
Q Consensus        60 -----------~---------~~~v~~~~~~~~p~----w~~~~~~~---------------~~~~~l~i~~l~~~~~~~  100 (616)
                                 +         ...+.++..+++|.    |.+.....               .....+.+..+...+.+.
T Consensus       296 v~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~  375 (741)
T KOG3515|consen  296 VQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQ  375 (741)
T ss_pred             cccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCce
Confidence                       0         01344444445544    77743331               111234455567788999


Q ss_pred             EEEEEEcCCCCCCCCCCCCcceeecCCCcee-------e------------eecC-cccccEEEEeeccCcccccccCCC
Q psy12426        101 FRVLAVNKGGPGEPSDPTAPHIARAKKGKCY-------H------------LVGT-LLKDSIYEQLKRSGLFDQFHLCPI  160 (616)
Q Consensus       101 y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~-------~------------~~g~-p~~~~~~~~~~~~~~~~~~~~~~~  160 (616)
                      |.|.|.|.......++...+  .....|..+       .            ..+. ..+.+.|..  +.-.+.   ....
T Consensus       376 v~c~a~~~~~~~~sss~~~l--~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~--~~~~~~---~~~g  448 (741)
T KOG3515|consen  376 VTCPADNLELAHSSSSSFLL--PVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTF--RLYKLS---QVDG  448 (741)
T ss_pred             EEccccccccccccccceec--cccCCchhhhhcccceeeccCccccccCcccCCCcccchhhee--cceecc---cccC
Confidence            99999998865554422221  111111100       0            1133 445677776  422211   1111


Q ss_pred             ceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE
Q psy12426        161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV  240 (616)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~  240 (616)
                      -..  .+........+.++...|.|.|.|+|.|..|.....     +. ......|.+ ...........++++.+.|..
T Consensus       449 ~~~--~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~-----~~-~~~~~sp~~-~~~~~~~~~~~~ns~~~~~~q  519 (741)
T KOG3515|consen  449 GVV--RVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAY-----LL-LGVHTSPHN-HHLQDQVEGATGNSVDGECMQ  519 (741)
T ss_pred             ceE--EeeccccccccceeeeccCCcceeeeccCCCceeeE-----Ee-eccccCCcc-cccccccccCCCCcccceeec
Confidence            000  111222233455688899999999999998875532     11 223334443 233344556677778899998


Q ss_pred             eeecCc--eeEEEECCeeecccCc--EEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCC-CCC
Q psy12426        241 IGEPIP--TKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSP-PEG  315 (616)
Q Consensus       241 ~~~p~~--~~~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~-p~~  315 (616)
                      ...+.-  .+.|.+.+........  ...........+.+........+.|.|.+.+..-.+.....+.+...+.. +..
T Consensus       520 ~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~t  599 (741)
T KOG3515|consen  520 DEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRT  599 (741)
T ss_pred             cccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccC
Confidence            877654  6789888776532111  11111122335666666666789999999882222233333333322211 111


Q ss_pred             C-ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC----CCEEEcc---ccccceEEeccccCCCeEEEEEEEEe
Q psy12426        316 P-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET----GRWVPMG---DVSGTYTRAENLIEGHDYNFRVKAVN  387 (616)
Q Consensus       316 ~-~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~----~~~~~~~---~~~~~~~~i~~L~~~~~y~~~v~a~n  387 (616)
                      | +.........++..|..    .+.+...|.........    ..+....   .....+..+.+..++..|.+.|.+.|
T Consensus       600 p~~~~~~~g~v~as~~~~a----~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~~~c~t~n  675 (741)
T KOG3515|consen  600 PNMYTAQEGCVNASDDCVA----SGVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYENGCTTQN  675 (741)
T ss_pred             CceeeeccCccccccccee----cccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhcceeeecc
Confidence            1 22222222234444421    12223333322211110    0001000   12233345556677889999999999


Q ss_pred             cCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC
Q psy12426        388 KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG  453 (616)
Q Consensus       388 ~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~  453 (616)
                      ..|.+.-+   ..+.   ....|..|.++.+.......+.|.|. |..+++. .++|.+.|...+.
T Consensus       676 ~lg~~~v~---~~~~---~~t~~~~~~n~~~~~~~~~~i~l~~~-p~fdgg~-~q~f~~~~~~~~~  733 (741)
T KOG3515|consen  676 LLGSDHVS---GAIH---SGTASVGPINLTYDNLTYSTISLEWM-PGFDGGL-QQRFFLKYYDLGT  733 (741)
T ss_pred             cCCCcccc---ceec---CCcCCCCccceEeeeeeeeeeceeee-ecccccc-ccceeeehhhcCC
Confidence            99986542   2222   23567888999999999999999999 5777775 6779998876653

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.26  E-value=1.2e-10  Score=89.72  Aligned_cols=84  Identities=18%  Similarity=0.315  Sum_probs=67.0

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-----CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+...     .++.+........|.|.++...|.|.|+|.|.|..|.
T Consensus         9 ~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   88 (97)
T cd05869           9 ENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQ   88 (97)
T ss_pred             cCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCC
Confidence            34455666899999999999999999999988765432     2344444444568999999999999999999999999


Q ss_pred             ceeeEEEEE
Q psy12426        298 DKGTAKVTV  306 (616)
Q Consensus       298 ~~~~~~l~v  306 (616)
                      ...++.|.|
T Consensus        89 ~~~~~~l~v   97 (97)
T cd05869          89 DSQSMYLEV   97 (97)
T ss_pred             eeEEEEEEC
Confidence            888877754

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.26  E-value=1.6e-11  Score=88.18  Aligned_cols=66  Identities=21%  Similarity=0.421  Sum_probs=53.6

Q ss_pred             eEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426         19 TLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ   98 (616)
Q Consensus        19 ~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~   98 (616)
                      +|.|.|.+.|.|.|.|+|+|+|..+.....|.-.                               ....+.|.++.+.|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~-------------------------------~~~~l~i~~v~~~D~   49 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIV-------------------------------KEHNLQVLGLVKSDE   49 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEE-------------------------------ecCCEEEEcCCcccC
Confidence            4899999999999999999999887644443221                               134678889999999


Q ss_pred             EEEEEEEEcCCCCCCCC
Q psy12426         99 YEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        99 ~~y~c~a~n~~g~~~~~  115 (616)
                      |.|+|.|.|..|....+
T Consensus        50 G~Y~C~A~N~~G~~~~~   66 (71)
T cd05723          50 GFYQCIAENDVGNVQAS   66 (71)
T ss_pred             EEEEEEEEcCCCEEEEE
Confidence            99999999999986654

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.25  E-value=3.3e-11  Score=88.62  Aligned_cols=72  Identities=11%  Similarity=0.226  Sum_probs=59.4

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      |++..+.+|+.+.|.|.+.|+ .|.|+|+|||.+|.....|.-.                                ...|
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~--------------------------------~~~L   47 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT--------------------------------GEEV   47 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe--------------------------------CCEE
Confidence            567889999999999999997 5689999999988744443211                                3479


Q ss_pred             EecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      .|.++.+.|+|.|.|.|.|..|...
T Consensus        48 ~I~~~~~~DsG~Y~C~a~n~~g~~~   72 (79)
T cd04973          48 QIKDAVPRDSGLYACVTSSPSGSDT   72 (79)
T ss_pred             EECCCChhhCEEEEEEEeCCCCccc
Confidence            9999999999999999999887643

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.25  E-value=2.8e-11  Score=88.92  Aligned_cols=71  Identities=23%  Similarity=0.283  Sum_probs=57.6

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG   96 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~   96 (616)
                      |+.|.|.|.+.|.|.|.|+|+|++..+....+|.-..                            ......|.|.++.+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~----------------------------~~~~~~L~I~~v~~~   52 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS----------------------------EGGYGTLTIRDVKES   52 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE----------------------------CCCEEEEEECCCChH
Confidence            7899999999999999999999998876544443321                            112457999999999


Q ss_pred             CeEEEEEEEEcCCCCCCCC
Q psy12426         97 NQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        97 ~~~~y~c~a~n~~g~~~~~  115 (616)
                      |.|.|.|.|.|..|.....
T Consensus        53 D~G~Y~C~a~N~~G~~~~~   71 (78)
T cd05743          53 DQGAYTCEAINTRGMVFGI   71 (78)
T ss_pred             HCEEEEEEEEecCCEEEec
Confidence            9999999999999966544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.25  E-value=8.2e-11  Score=86.39  Aligned_cols=75  Identities=27%  Similarity=0.361  Sum_probs=64.3

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      |+++.|.|.+.|.|.|.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            678999999999999999999999888766777776666667999999999999999999999999876554443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.25  E-value=9.9e-11  Score=89.06  Aligned_cols=84  Identities=26%  Similarity=0.453  Sum_probs=67.0

Q ss_pred             CcceEEEcCCeEEEEEEEeeecC-ceeEEEE-CCeeecc-cCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCC-CC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPI-PTKEWLC-NDITIIS-KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSW-GT  297 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~-~~~~W~~-~~~~~~~-~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~-g~  297 (616)
                      +.+..+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. +.++.+... +..+.|.|.+++..|.|.|+|.|.|.. |.
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~   86 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE   86 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence            34567889999999999999995 6999998 7766554 445554432 335689999999999999999999986 78


Q ss_pred             ceeeEEEEE
Q psy12426        298 DKGTAKVTV  306 (616)
Q Consensus       298 ~~~~~~l~v  306 (616)
                      ...++.|.+
T Consensus        87 ~~~s~~l~v   95 (96)
T cd05865          87 SEATVNVKI   95 (96)
T ss_pred             EEEEEEEEE
Confidence            888877765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.24  E-value=1.3e-10  Score=89.73  Aligned_cols=83  Identities=20%  Similarity=0.321  Sum_probs=67.2

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Ceeecc-----cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITIIS-----KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      +.+..+.+|+.+.|.|.+.|.|.|.+.|++.  +..+..     +.++.+........|.|.+++.+|.|.|+|.|.|..
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   87 (98)
T cd05870           8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI   87 (98)
T ss_pred             eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence            4678899999999999999999999999994  333321     235555544445689999999999999999999999


Q ss_pred             CCceeeEEEE
Q psy12426        296 GTDKGTAKVT  305 (616)
Q Consensus       296 g~~~~~~~l~  305 (616)
                      |....++.|.
T Consensus        88 G~~~~~~~l~   97 (98)
T cd05870          88 GGHQKSMYLD   97 (98)
T ss_pred             CcceeEEEEe
Confidence            9888777665

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.24  E-value=1.8e-10  Score=87.39  Aligned_cols=84  Identities=25%  Similarity=0.456  Sum_probs=70.6

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+... +....|.|.+++..|+|.|+|.|.|..|.....
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence            4567899999999999999999999999999988776666655433 233589999999999999999999999998887


Q ss_pred             EEEEE
Q psy12426        302 AKVTV  306 (616)
Q Consensus       302 ~~l~v  306 (616)
                      +.+.|
T Consensus        88 ~~v~~   92 (92)
T cd05891          88 VTVSV   92 (92)
T ss_pred             EEEEC
Confidence            77653

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.24  E-value=1.6e-10  Score=86.85  Aligned_cols=82  Identities=23%  Similarity=0.484  Sum_probs=68.5

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEE-CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-ee
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLC-NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KG  300 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~  300 (616)
                      +.+..+..|+.+.|.|.+.|.|. .+.|++ ++..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|.. ..
T Consensus         7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   85 (92)
T cd05866           7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA   85 (92)
T ss_pred             ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence            46678999999999999999998 899998 4666666677877766767799999999999999999999999875 44


Q ss_pred             eEEEE
Q psy12426        301 TAKVT  305 (616)
Q Consensus       301 ~~~l~  305 (616)
                      +..|.
T Consensus        86 ~i~l~   90 (92)
T cd05866          86 TVVLE   90 (92)
T ss_pred             EEEEE
Confidence            44443

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.24  E-value=4.2e-11  Score=90.04  Aligned_cols=77  Identities=22%  Similarity=0.322  Sum_probs=61.4

Q ss_pred             CCCceEecCCCeEEEEEEEeeecCCeeeeeeC-CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG-GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~-~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      .|.++.+.+|+++.|.|.+.|.|. .|+|+|+ +..+...++|.-..                            .....
T Consensus         6 ~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~----------------------------~g~~~   56 (92)
T cd05866           6 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQK----------------------------EGVRS   56 (92)
T ss_pred             EecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEe----------------------------CCCee
Confidence            478899999999999999999998 8999984 66665444443321                            11234


Q ss_pred             ceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      .|.|.++...|.|.|+|.|.|..|...
T Consensus        57 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~   83 (92)
T cd05866          57 RLTIYNANIEDAGIYRCQATDAKGQTQ   83 (92)
T ss_pred             EEEEecCChHHCEEEEEEEEcCCCcEE
Confidence            899999999999999999999998754

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.23  E-value=8.4e-11  Score=85.17  Aligned_cols=73  Identities=23%  Similarity=0.421  Sum_probs=63.5

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      |+.+.|.|.+.+.|.+.+.|++++..+....++.+...+   .|.|.++...|.|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            678999999999999999999999988777777654433   7999999999999999999999999888877654

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.23  E-value=2.1e-11  Score=89.54  Aligned_cols=70  Identities=21%  Similarity=0.271  Sum_probs=56.6

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG   96 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~   96 (616)
                      |+.+.|.|.+.|+|.|.|+|+++|+.+.........                             ......|.|.+++..
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~-----------------------------~~~~~~L~i~~v~~~   51 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRR-----------------------------RVDGGTLILSNVQPN   51 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceE-----------------------------EccCCEEEECCCChh
Confidence            789999999999999999999999988643221111                             122468999999999


Q ss_pred             CeEEEEEEEEcCCCCCCCC
Q psy12426         97 NQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        97 ~~~~y~c~a~n~~g~~~~~  115 (616)
                      |.|.|+|.|.|..|....+
T Consensus        52 D~G~Y~C~A~N~~G~~~~~   70 (76)
T cd04978          52 DTAVYQCNASNVHGYLLAN   70 (76)
T ss_pred             hCEEEEEEEEccCCeEEEe
Confidence            9999999999999976544

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.23  E-value=1.4e-11  Score=88.00  Aligned_cols=65  Identities=17%  Similarity=0.252  Sum_probs=54.9

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY   99 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~   99 (616)
                      |.|.|.+.|.|.|.|+|+|+|..+...+.|...                               ....|.|.++...|.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~-------------------------------~~~~L~I~~~~~~D~G   49 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHIS-------------------------------PEGYLAIRDVGVADQG   49 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEEC-------------------------------CCCEEEECcCChhhCE
Confidence            579999999999999999999888756655322                               2457999999999999


Q ss_pred             EEEEEEEcCCCCCCCC
Q psy12426        100 EFRVLAVNKGGPGEPS  115 (616)
Q Consensus       100 ~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.|.|..|....+
T Consensus        50 ~Y~C~a~N~~G~~~~~   65 (69)
T cd05746          50 RYECVARNTIGYASVS   65 (69)
T ss_pred             EEEEEEECCCCcEEEE
Confidence            9999999999976544

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.22  E-value=4.2e-11  Score=90.40  Aligned_cols=76  Identities=24%  Similarity=0.397  Sum_probs=62.7

Q ss_pred             CCCceEecCCCeEEEEEEE-eeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426          8 HLGDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      .|.++.+.+|+++.|.|.+ .|.|.|.|.|+|+|..+.. .+.|.-                               ...
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~-------------------------------~~~   50 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRI-------------------------------VDD   50 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEE-------------------------------ccC
Confidence            4789999999999999997 7999999999999988764 222211                               114


Q ss_pred             CceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                      ..|.|.++...|.|.|+|.|.|..|....
T Consensus        51 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724          51 GNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             CEEEEeECCcccCEEEEEEEEeccCceee
Confidence            58999999999999999999999987654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.22  E-value=4e-11  Score=85.12  Aligned_cols=65  Identities=18%  Similarity=0.361  Sum_probs=50.6

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG   96 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~   96 (616)
                      |+.|.|.|.+.|+|.|.|+|+|+++.+.....+ .                               .....|.|.++.  
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~-~-------------------------------~~~~~L~i~~~~--   46 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEM-P-------------------------------VGRNVLELTNIY--   46 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccce-e-------------------------------cCccEEEEeccc--
Confidence            789999999999999999999999887632221 0                               113467888874  


Q ss_pred             CeEEEEEEEEcCCCCCCCC
Q psy12426         97 NQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        97 ~~~~y~c~a~n~~g~~~~~  115 (616)
                      +.|.|.|.|.|..|....+
T Consensus        47 d~G~Y~C~A~N~~G~~~~~   65 (69)
T cd05739          47 ESANYTCVAISSLGMIEAT   65 (69)
T ss_pred             cCeeEEEEEEeCCCEEEEE
Confidence            6899999999999975543

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.22  E-value=3.3e-11  Score=87.32  Aligned_cols=68  Identities=15%  Similarity=0.255  Sum_probs=57.3

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG   96 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~   96 (616)
                      |+++.|.|.+.|.|.|.++|+|++..+.....|...                               ....|.|.++...
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~-------------------------------~~~~L~i~~v~~~   49 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW-------------------------------PDGSLEILNVTKS   49 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC-------------------------------CCCeEEEccCChh
Confidence            789999999999999999999999987644444321                               2357999999999


Q ss_pred             CeEEEEEEEEcCCCCCCCC
Q psy12426         97 NQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        97 ~~~~y~c~a~n~~g~~~~~  115 (616)
                      |.|.|.|.|.|..|....+
T Consensus        50 D~G~Y~C~a~N~~G~~~~~   68 (73)
T cd04969          50 DEGKYTCFAENFFGKANST   68 (73)
T ss_pred             HCEEEEEEEECCCCceEEE
Confidence            9999999999999977654

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.21  E-value=5.2e-11  Score=91.50  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=59.1

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccc--eEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPI--WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~--Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      ...|++..+.+|+++.|.|.+.|.|.|.|+|+|||+.+.....  |.-.                               
T Consensus         3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~-------------------------------   51 (95)
T cd05722           3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQL-------------------------------   51 (95)
T ss_pred             EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEc-------------------------------
Confidence            3468899999999999999999999999999999998864221  2111                               


Q ss_pred             CCCceEecCc-----ccCCeEEEEEEEEcC-CCCC
Q psy12426         84 DTPKGKVLDL-----IEGNQYEFRVLAVNK-GGPG  112 (616)
Q Consensus        84 ~~~~l~i~~l-----~~~~~~~y~c~a~n~-~g~~  112 (616)
                      ..+.+.|.++     .+.|.|.|+|.|.|. .|..
T Consensus        52 ~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~   86 (95)
T cd05722          52 PNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI   86 (95)
T ss_pred             cCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence            1234555555     588999999999999 8865

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.21  E-value=2.4e-10  Score=88.23  Aligned_cols=84  Identities=19%  Similarity=0.310  Sum_probs=68.5

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-----CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      +.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...     .++.+........|.|.+++..|.|.|+|.|.|..|.
T Consensus         8 ~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   87 (96)
T cd05732           8 LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG   87 (96)
T ss_pred             cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC
Confidence            45678889999999999999999999999988655432     2444444445578999999999999999999999999


Q ss_pred             ceeeEEEEE
Q psy12426        298 DKGTAKVTV  306 (616)
Q Consensus       298 ~~~~~~l~v  306 (616)
                      ...++.|.+
T Consensus        88 ~~~s~~l~v   96 (96)
T cd05732          88 DQQSMYLEV   96 (96)
T ss_pred             cEEEEEEeC
Confidence            887777653

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.21  E-value=1.9e-10  Score=83.41  Aligned_cols=73  Identities=23%  Similarity=0.349  Sum_probs=60.4

Q ss_pred             EEEEEEEeeecCceeEEEECCeeecc-cCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.|.+.|.|.|.+.|++++..+.. ..++.+... .+...|.|.+++..|.|.|+|.|.|..|.....+.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            46899999999999999999988864 345655443 34457999999999999999999999999888777653

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.20  E-value=2.4e-10  Score=85.11  Aligned_cols=79  Identities=16%  Similarity=0.298  Sum_probs=63.6

Q ss_pred             CeEEEEEEEeeecCc--eeEEEECCeeeccc---CcEEE-EecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        232 SNFEFDINVIGEPIP--TKEWLCNDITIISK---DRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       232 ~~~~l~c~~~~~p~~--~~~W~~~~~~~~~~---~~~~~-~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      +++.|.|.+.|.|.|  .+.|++++..+...   .++.. ........|.|.+++..|.|.|+|.|.|..|....++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            368899999999987  58999999887532   23322 2222345899999999999999999999999999999999


Q ss_pred             EecCC
Q psy12426        306 VLDIP  310 (616)
Q Consensus       306 v~~~p  310 (616)
                      |..+|
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.20  E-value=1.6e-10  Score=84.09  Aligned_cols=74  Identities=22%  Similarity=0.279  Sum_probs=60.1

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecccCc-EEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDR-FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      |+.+.|.|.+.|.|.|.+.|++++..+..... ......+  ..|.|.++++.|.|.|+|.|.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            57889999999999999999999998753321 1111222  37899999999999999999999999988888776

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.20  E-value=2.5e-10  Score=83.42  Aligned_cols=72  Identities=29%  Similarity=0.437  Sum_probs=60.1

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecccC---cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIISKD---RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      |+.+.|.|.+.|.|.|.+.|++++..+....   ++.+.    ...|.|.++++.|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS----SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEee----CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6789999999999999999999998875432   33221    238999999999999999999999999888877765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.20  E-value=3.1e-11  Score=85.49  Aligned_cols=63  Identities=19%  Similarity=0.315  Sum_probs=52.0

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY   99 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~   99 (616)
                      +.|.|.+.|.|.|.|+|+|||++|.....+                                 .....|.|.++.+.|.|
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~---------------------------------~~~~~L~I~~v~~~D~G   47 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF---------------------------------KRGVHLTIYEVTEKDAG   47 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE---------------------------------ccCCEEEECcCCHHHCE
Confidence            479999999999999999999988733221                                 01347999999999999


Q ss_pred             EEEEEEEcCCCCCCCC
Q psy12426        100 EFRVLAVNKGGPGEPS  115 (616)
Q Consensus       100 ~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.|.|..|.....
T Consensus        48 ~YtC~a~N~~G~~~~~   63 (70)
T cd05864          48 NYTVVLTNPITKEEQR   63 (70)
T ss_pred             EEEEEEEECCCceeeE
Confidence            9999999999976554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.20  E-value=8.4e-11  Score=85.56  Aligned_cols=69  Identities=17%  Similarity=0.362  Sum_probs=55.9

Q ss_pred             eEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426         19 TLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ   98 (616)
Q Consensus        19 ~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~   98 (616)
                      .+.|.|.+.|.|.|.++|+|+|..+.....|.-..                            ......|.|.++.+.|.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~----------------------------~~~~~~L~I~~~~~~D~   52 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET----------------------------TASSTSLVIKNAERSDS   52 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE----------------------------CCCeEEEEECCCCcCcC
Confidence            47899999999999999999999886555543331                            12246899999999999


Q ss_pred             EEEEEEEEcCCCCCCCC
Q psy12426         99 YEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        99 ~~y~c~a~n~~g~~~~~  115 (616)
                      |.|.|.|.|..|....+
T Consensus        53 G~Y~C~a~N~~G~~~~~   69 (74)
T cd05748          53 GKYTLTLKNPAGEKSAT   69 (74)
T ss_pred             EEEEEEEECCCccEEEE
Confidence            99999999999976543

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.20  E-value=2.1e-10  Score=88.21  Aligned_cols=83  Identities=24%  Similarity=0.258  Sum_probs=68.6

Q ss_pred             ceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec------CCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND------DKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~------~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      ...+..|+.+.|.|.+.|.|.|.+.|+|++..+..+.+......      ...+.|.|.++...|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            46678899999999999999999999999999875554332211      123589999999999999999999999998


Q ss_pred             eeeEEEEEe
Q psy12426        299 KGTAKVTVL  307 (616)
Q Consensus       299 ~~~~~l~v~  307 (616)
                      ..++.+.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888887764

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.19  E-value=4.2e-11  Score=85.81  Aligned_cols=63  Identities=16%  Similarity=0.286  Sum_probs=52.3

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY   99 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~   99 (616)
                      |+|.|.+.|.|.|.++|+|||..|.....|                                .....+|.|.++.+.|+|
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~--------------------------------~~~~~~L~I~~v~~~D~G   48 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT--------------------------------KKSGHSLTIKDVTEEDAG   48 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--------------------------------EcCCCEEEECcCCHHHCE
Confidence            579999999999999999999988744332                                112468999999999999


Q ss_pred             EEEEEEEcCCCCCCC
Q psy12426        100 EFRVLAVNKGGPGEP  114 (616)
Q Consensus       100 ~y~c~a~n~~g~~~~  114 (616)
                      .|.|.|.|..|....
T Consensus        49 ~YtC~a~N~~g~~~~   63 (71)
T cd04976          49 NYTVVLTNKQAKLEK   63 (71)
T ss_pred             EEEEEEEcCCccEEE
Confidence            999999999886543

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.18  E-value=5.3e-10  Score=87.72  Aligned_cols=81  Identities=17%  Similarity=0.275  Sum_probs=66.2

Q ss_pred             cCCeEEEEEEEeeecCceeEEEECCeeecc-cCcEEEEec----CCceEEEecCCC-CCCcEEEEEEEEcCCCCceeeEE
Q psy12426        230 AGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND----DKSTKLKVFDSK-RGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       230 ~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~----~~~~~l~i~~l~-~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                      .|..+.|.|.+.|.|.+.+.|++++..+.. +.++.+...    .....|.|.++. ..|.|.|+|.|.|..|.......
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~  101 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ  101 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence            457899999999999999999999988753 335543321    123689999997 58999999999999999999999


Q ss_pred             EEEecCC
Q psy12426        304 VTVLDIP  310 (616)
Q Consensus       304 l~v~~~p  310 (616)
                      |.+..+|
T Consensus       102 L~~~~~p  108 (109)
T cd05773         102 LVSTSRP  108 (109)
T ss_pred             EEecCCC
Confidence            9988776

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.18  E-value=1.2e-10  Score=83.23  Aligned_cols=68  Identities=21%  Similarity=0.390  Sum_probs=58.4

Q ss_pred             EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      +.|.|.+.|.|.|.+.|++++..+....++.+...   ..|.|.++...|.|.|+|.|.|..|....+..|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPE---GYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCC---CEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            46899999999999999999988876666665443   389999999999999999999999998777655

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.18  E-value=6.4e-11  Score=86.57  Aligned_cols=66  Identities=18%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeec-cceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLR-PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ   98 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~-G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~   98 (616)
                      |+|.|.+.|.|.|.|+|+|+|.++... +.|...                              .....|.|.++.+.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~------------------------------~~~~~L~I~~~~~~D~   50 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVS------------------------------SKERTLTLRSAGPDDS   50 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEe------------------------------CCCCEEEEeeCCcccC
Confidence            589999999999999999999988632 233221                              1235899999999999


Q ss_pred             EEEEEEEEcCCCCCCCC
Q psy12426         99 YEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        99 ~~y~c~a~n~~g~~~~~  115 (616)
                      |.|.|.|.|..|....+
T Consensus        51 G~Y~C~a~N~~G~~~s~   67 (77)
T cd05760          51 GLYYCCAHNAFGSVCSS   67 (77)
T ss_pred             EEEEEEEEeCCCeEeeC
Confidence            99999999999976443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.18  E-value=8.5e-11  Score=90.39  Aligned_cols=83  Identities=14%  Similarity=0.090  Sum_probs=62.1

Q ss_pred             ceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEe
Q psy12426         11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKV   90 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i   90 (616)
                      ...+..|+.+.|.|.+.|.|+|.|+|+|||.+|...........+.       +.               .......|.|
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~-------~~---------------~~~~~s~L~I   69 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHN-------VQ---------------ETRYVSKLKL   69 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEecccc-------cc---------------ceeeccEEEE
Confidence            6778999999999999999999999999999987433221111000       00               0111368999


Q ss_pred             cCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         91 LDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        91 ~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .++.+.|.|.|.|.|.|..|....+
T Consensus        70 ~~v~~~D~G~Ytc~A~N~~g~~~~t   94 (101)
T cd05859          70 IRAKEEDSGLYTALAQNEDAVKSYT   94 (101)
T ss_pred             eeCCHHHCEEEEEEEEcCCceEEEE
Confidence            9999999999999999998875443

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>KOG0196|consensus

Probab=99.18  E-value=8.1e-10  Score=109.89  Aligned_cols=145  Identities=24%  Similarity=0.319  Sum_probs=101.8

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceE-------eEee----cCCccEEEcCCCCCC
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK-------ACIV----PANITATSVPDLKEG  476 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~-------~~~~----~~~~~~~~l~~L~p~  476 (616)
                      .+|++|.++... ++.+++.|.|.+|.+.++-.-..|.+.++.-...-..       ..-.    .-.....++.+|.|.
T Consensus       330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah  408 (996)
T KOG0196|consen  330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH  408 (996)
T ss_pred             CCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence            578899888766 8999999999999887776666788887665421000       1111    123678999999999


Q ss_pred             CeEEEEEEEEcCCCC-CCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeec
Q psy12426        477 EEYEFRVIAVNKGGP-GEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDN  555 (616)
Q Consensus       477 t~Y~~~v~a~n~~G~-g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (616)
                      +.|.|.|.|+|..-. ++.......+                                               ..++...
T Consensus       409 ~~YTFeV~AvNgVS~lsp~~~~~a~v-----------------------------------------------nItt~qa  441 (996)
T KOG0196|consen  409 TNYTFEVEAVNGVSDLSPFPRQFASV-----------------------------------------------NITTNQA  441 (996)
T ss_pred             cccEEEEEEeecccccCCCCCcceeE-----------------------------------------------Eeecccc
Confidence            999999999998632 2211111111                                               1122223


Q ss_pred             CCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCC
Q psy12426        556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG  601 (616)
Q Consensus       556 ~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~  601 (616)
                      .|.+-..++....+.++|+|+|..|..+ ||.|.-|+|.|.+++.+
T Consensus       442 ~ps~V~~~r~~~~~~~sitlsW~~p~~p-ng~ildYEvky~ek~~~  486 (996)
T KOG0196|consen  442 APSPVSVLRQVSRTSDSITLSWSEPDQP-NGVILDYEVKYYEKDED  486 (996)
T ss_pred             CCCccceEEEeeeccCceEEecCCCCCC-CCcceeEEEEEeecccc
Confidence            3444445678888999999999998766 89999999999988643

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.16  E-value=2.8e-10  Score=83.51  Aligned_cols=75  Identities=23%  Similarity=0.240  Sum_probs=61.2

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      |+.+.|.|.+.|.|.|.+.|++++..+...... .........|.|.+++..|.|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPD-PRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCc-ceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            678999999999999999999999887644322 111222358999999999999999999999999888887765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.16  E-value=1.9e-10  Score=87.44  Aligned_cols=81  Identities=15%  Similarity=0.197  Sum_probs=61.0

Q ss_pred             CccCCCCCCceEecCC---CeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          2 PHIDRRHLGDIKLSAG---TTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g---~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      |.+. ++|.++.+.+|   +.+.|.|.+.|+|.|.|+|+|++..+.....+.+..                         
T Consensus         2 P~f~-~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-------------------------   55 (91)
T cd04967           2 PVFE-EQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-------------------------   55 (91)
T ss_pred             CeeE-eCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-------------------------
Confidence            5555 45888877655   579999999999999999999999885322222222                         


Q ss_pred             cccCCCCCceEecCcc-cCCeEEEEEEEEcCCCCCC
Q psy12426         79 AQTEGDTPKGKVLDLI-EGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~-~~~~~~y~c~a~n~~g~~~  113 (616)
                           ....|.|.++. ..|+|.|+|.|.|..|...
T Consensus        56 -----~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          56 -----VGGNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             -----ECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence                 13467888776 4899999999999999643

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.16  E-value=1.4e-10  Score=87.17  Aligned_cols=75  Identities=16%  Similarity=0.189  Sum_probs=58.8

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE   95 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~   95 (616)
                      |+.++|.|.+.|.|+|.|+|+|++..+.. ..+|.-......                        ......|.|.++..
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~------------------------~~~~s~L~I~~~~~   56 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVG------------------------DEVISTLQILPTVR   56 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCC------------------------CcEEEEEEECCCCc
Confidence            89999999999999999999999987753 345544421100                        11125799999999


Q ss_pred             CCeEEEEEEEEcCCCCCCCC
Q psy12426         96 GNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        96 ~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.|.|.|.|..|.....
T Consensus        57 ~D~G~YtC~A~N~~G~~~~~   76 (88)
T cd05735          57 EDSGFFSCHAINSYGEDRGI   76 (88)
T ss_pred             ccCEEEEEEEEcCCCcceEE
Confidence            99999999999999987765

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.16  E-value=2.6e-10  Score=79.61  Aligned_cols=65  Identities=22%  Similarity=0.336  Sum_probs=54.3

Q ss_pred             EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.|.+.|.|.|.+.|+|+|..+...        .....|.|.++..+|+|.|+|.|.|..|....+..+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            368999999999999999999887521        23349999999999999999999999997766665554

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.16  E-value=1.6e-10  Score=86.96  Aligned_cols=78  Identities=17%  Similarity=0.253  Sum_probs=59.9

Q ss_pred             ceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEe
Q psy12426         11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKV   90 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i   90 (616)
                      .+.|.+|+.+.|.|.+.|.|.|.|+|+|+|..+.....+.=.          .+                 ......|.|
T Consensus         3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~----------~~-----------------~~~~~~l~i   55 (85)
T cd05857           3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGY----------KV-----------------RNQHWSLIM   55 (85)
T ss_pred             cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeee----------EE-----------------eCCceEEEE
Confidence            356889999999999999999999999999988642221000          00                 012346889


Q ss_pred             cCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         91 LDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        91 ~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .++.+.|.|.|.|.|.|..|....+
T Consensus        56 ~~~~~~D~G~Y~C~a~N~~G~~~~~   80 (85)
T cd05857          56 ESVVPSDKGNYTCVVENEYGSINHT   80 (85)
T ss_pred             ccCCcccCEEEEEEEEeCCCEEEEE
Confidence            9999999999999999999976544

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.16  E-value=4.2e-10  Score=84.62  Aligned_cols=81  Identities=26%  Similarity=0.362  Sum_probs=65.7

Q ss_pred             eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEE-EEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+..+.+.. .........|.|.++.+.|.|.|+|.|.|..|....++.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            457789999999999999999999999999886554331 1222334579999999999999999999999998887776


Q ss_pred             EE
Q psy12426        305 TV  306 (616)
Q Consensus       305 ~v  306 (616)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            53

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.16  E-value=3.6e-10  Score=83.09  Aligned_cols=77  Identities=16%  Similarity=0.353  Sum_probs=64.0

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                      ....+.+|+.+.|.|.+.+. .+.+.|++++..+..+.++.+..    ..|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~----~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~   76 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITG----EEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS   76 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeC----CEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence            45678899999999999986 56899999999887666665542    28999999999999999999999888766665


Q ss_pred             EE
Q psy12426        304 VT  305 (616)
Q Consensus       304 l~  305 (616)
                      +.
T Consensus        77 v~   78 (79)
T cd04973          77 VN   78 (79)
T ss_pred             Ee
Confidence            54

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.15  E-value=2.7e-10  Score=89.36  Aligned_cols=91  Identities=19%  Similarity=0.246  Sum_probs=64.2

Q ss_pred             CCccCCCCCCceEec---CCCeEEEEEEEeeecCCeeeeeeCCeeeeec-cceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426          1 APHIDRRHLGDIKLS---AGTTLKFDANIIGEPVPHVDWRAGGNPLNLR-PIWEKCAQTEGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~---~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~-G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      ||+|...+....++.   .|+.+.|.|.+.|+|.|.++|+|||..|... .+|.-.....                    
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~--------------------   63 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHT--------------------   63 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeecc--------------------
Confidence            688864433233333   4589999999999999999999999988642 2443221000                    


Q ss_pred             eccccCCCCCceEecCcc-cCCeEEEEEEEEcCCCCCCCC
Q psy12426         77 KCAQTEGDTPKGKVLDLI-EGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~-~~~~~~y~c~a~n~~g~~~~~  115 (616)
                          .......|.|.++. +.|.|.|.|.|.|..|.....
T Consensus        64 ----~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~   99 (109)
T cd05773          64 ----GTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD   99 (109)
T ss_pred             ----CccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE
Confidence                01113578999997 689999999999999987544

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.15  E-value=1.6e-10  Score=83.81  Aligned_cols=69  Identities=13%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ   98 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~   98 (616)
                      |+|.|.+.|.|.|.|.|+|++..+.. ..+|.-.. +                          .....+|.|.++.+.|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~-~--------------------------~~~~~~L~I~~~~~~D~   53 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ-D--------------------------NCGRICLLIQNANKEDA   53 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE-c--------------------------CCCeEEEEECCCCcccC
Confidence            57999999999999999999998874 23332211 0                          01123699999999999


Q ss_pred             EEEEEEEEcCCCCCCCC
Q psy12426         99 YEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        99 ~~y~c~a~n~~g~~~~~  115 (616)
                      |.|.|.|.|..|.....
T Consensus        54 G~Y~C~a~N~~G~~~~~   70 (75)
T cd05744          54 GWYTVSAVNEAGVVSCN   70 (75)
T ss_pred             EEEEEEEEcCCCcEEEE
Confidence            99999999999976543

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.15  E-value=1.4e-10  Score=83.76  Aligned_cols=71  Identities=17%  Similarity=0.145  Sum_probs=52.3

Q ss_pred             EEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeEEE
Q psy12426         22 FDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEF  101 (616)
Q Consensus        22 l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~~y  101 (616)
                      |.|.+.|+|.|.|+|+|||++|..+.......           ...            ........|.|.++...|.|.|
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~-----------~~~------------~~~~~~~~L~i~~~~~~D~G~Y   59 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKI-----------HVI------------NNTEYHGCLQLDNPTHLNNGIY   59 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeee-----------Eee------------cccceEEEEEECCCCcccCEEE
Confidence            68999999999999999999997433221110           000            0011135799999999999999


Q ss_pred             EEEEEcCCCCCCCC
Q psy12426        102 RVLAVNKGGPGEPS  115 (616)
Q Consensus       102 ~c~a~n~~g~~~~~  115 (616)
                      .|.|.|..|.....
T Consensus        60 tC~A~N~~G~~~~~   73 (79)
T cd05855          60 TLVAKNEYGEDEKN   73 (79)
T ss_pred             EEEEEcCCcccceE
Confidence            99999999977654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.14  E-value=3.6e-10  Score=80.21  Aligned_cols=68  Identities=22%  Similarity=0.411  Sum_probs=55.2

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      |+.+.|.|.+.|.|.|.+.|++++..+....++..    ....|.|.++.  |.|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            57899999999999999999999988765444332    22378899975  7899999999999987776655

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.14  E-value=6.1e-10  Score=84.02  Aligned_cols=82  Identities=15%  Similarity=0.254  Sum_probs=65.0

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-e
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-K  299 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~  299 (616)
                      ..+.+..+.+|+.+.|.|.+.|. .|.+.|++++..+.. .++.+..  ....|.|.+++..|.|.|+|.|.|..|.. +
T Consensus         8 ~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~-~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740           8 NSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVP-PRLQLSN--DNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             cccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCC-CCEEEeC--CCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            34456788999999999999999 999999999988754 3444432  33489999999999999999999999975 3


Q ss_pred             eeEEEEE
Q psy12426        300 GTAKVTV  306 (616)
Q Consensus       300 ~~~~l~v  306 (616)
                      ..+.|.|
T Consensus        84 ~~~~L~V   90 (91)
T cd05740          84 DPYILNV   90 (91)
T ss_pred             eeEEEEe
Confidence            3444544

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.14  E-value=1.8e-10  Score=83.54  Aligned_cols=63  Identities=16%  Similarity=0.215  Sum_probs=51.1

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCC
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN   97 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~   97 (616)
                      ++|.|.+.|+|.|.|+|+|++..+..  .++|.-                               .....|.|.++++.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~-------------------------------~~~g~L~i~~~~~~D   49 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ-------------------------------LRSGALQIENSEESD   49 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE-------------------------------cCCcEEEECCCChhh
Confidence            57999999999999999999987752  334321                               124578999999999


Q ss_pred             eEEEEEEEEcCCCCCC
Q psy12426         98 QYEFRVLAVNKGGPGE  113 (616)
Q Consensus        98 ~~~y~c~a~n~~g~~~  113 (616)
                      .|.|+|.|.|..|...
T Consensus        50 ~G~Y~C~a~N~~G~~~   65 (74)
T cd05738          50 QGKYECVATNSAGTRY   65 (74)
T ss_pred             CEEEEEEEECCCCceE
Confidence            9999999999999753

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.13  E-value=4.5e-10  Score=82.44  Aligned_cols=79  Identities=20%  Similarity=0.193  Sum_probs=63.8

Q ss_pred             CeEEEEEEEeeec--CceeEEEECCeeecc---cCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        232 SNFEFDINVIGEP--IPTKEWLCNDITIIS---KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       232 ~~~~l~c~~~~~p--~~~~~W~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      +++.|.|.+.+.+  .+.+.|++++..+..   +.++..... .....|.|.+++..|+|.|+|.|.|..+....++.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            3678999998754  679999999999852   234444221 2334899999999999999999999999999999999


Q ss_pred             EecCC
Q psy12426        306 VLDIP  310 (616)
Q Consensus       306 v~~~p  310 (616)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd05853          81 VRGPP   85 (85)
T ss_pred             EecCC
Confidence            98776

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.13  E-value=3.4e-10  Score=81.25  Aligned_cols=70  Identities=23%  Similarity=0.312  Sum_probs=56.9

Q ss_pred             EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.|.+.|.|.|.+.|++++..+.... ....  .....|.|.+++..|.|.|+|.|.|..|....++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNR-TKKL--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCc-eeEE--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            3689999999999999999988765432 2222  23349999999999999999999999999888777765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.13  E-value=3.9e-10  Score=85.62  Aligned_cols=75  Identities=16%  Similarity=0.266  Sum_probs=58.2

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeee-CCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRA-GGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~-~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      |....+.+|+++.|.|.+.|.|. .|+|++ ++..+...+.+.-.. +                          ......
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~-~--------------------------~~~~~~   58 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQ-N--------------------------DDVRST   58 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEe-C--------------------------CCCEEE
Confidence            77899999999999999999975 999998 566555434432221 0                          112358


Q ss_pred             eEecCcccCCeEEEEEEEEcCCCC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNKGGP  111 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~~g~  111 (616)
                      |.|.++...|.|.|+|.|.|..|.
T Consensus        59 L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977          59 LTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             EEEecCCcccCEEEEEEEEcCCCC
Confidence            999999999999999999998664

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.12  E-value=1.3e-10  Score=84.45  Aligned_cols=67  Identities=13%  Similarity=0.197  Sum_probs=55.7

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      |.|.+. |+...+.+|++|+|+|.+.|.|.+ .++|+|||..|..                                   
T Consensus         1 ~vv~~~-P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-----------------------------------   44 (78)
T cd05752           1 AVVSLD-PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-----------------------------------   44 (78)
T ss_pred             CeEEeC-CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-----------------------------------
Confidence            566655 888889999999999999998874 6999999987741                                   


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                         ....|.|.++ ..|+|.|+|.|.|.
T Consensus        45 ---~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          45 ---TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             ---cCCeEEEeec-ccCCEEeEEECCCC
Confidence               1357888889 99999999999864

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.12  E-value=6.7e-10  Score=81.49  Aligned_cols=71  Identities=23%  Similarity=0.375  Sum_probs=57.5

Q ss_pred             EEEEEeeecCceeEEEECCeeecccCcEEEEe-------cCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        236 FDINVIGEPIPTKEWLCNDITIISKDRFKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       236 l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.+.|.|.|.++|++++..+..+.+.....       ......|.|.++...|.|.|+|.|.|..|.......+.+
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            68999999999999999999987665433221       122457999999999999999999999999887776653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.11  E-value=5.2e-10  Score=80.14  Aligned_cols=69  Identities=25%  Similarity=0.352  Sum_probs=56.7

Q ss_pred             EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.|.+.|.|.|.+.|++++..+..+.++..    ....|.|.++...|+|.|+|.|.|..|.......+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            36899999999999999999998876544322    2348999999999999999999999998766666554

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.11  E-value=1.9e-10  Score=84.14  Aligned_cols=68  Identities=15%  Similarity=0.225  Sum_probs=49.8

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc----
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE----   95 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~----   95 (616)
                      +.|.|.+.|+|.|.|+|+|||..+.......+..                            ....+.|.|..+..    
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~----------------------------~~~~g~L~i~~~~~~~~~   52 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTM----------------------------KPDSGTLVIDNMNGGRAE   52 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEE----------------------------eCCCCEEEEeccCCCCCc
Confidence            5799999999999999999998875321111111                            11246778887754    


Q ss_pred             CCeEEEEEEEEcCCCCCCCC
Q psy12426         96 GNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        96 ~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.|+|.|.|..|.....
T Consensus        53 ~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05733          53 DYEGEYQCYASNELGTAISN   72 (77)
T ss_pred             CCCEEEEEEEEcCCCcEEcc
Confidence            68999999999999975443

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.11  E-value=8.2e-10  Score=79.74  Aligned_cols=70  Identities=23%  Similarity=0.403  Sum_probs=56.8

Q ss_pred             EEEEEeeecCceeEEEECCeeecccCcEEE--Ee---cCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        236 FDINVIGEPIPTKEWLCNDITIISKDRFKI--VN---DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       236 l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~---~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      +.|.+.|.|.|+++|++++..+..+.+...  ..   ......|.|.++...|.|.|+|.|.|..|....++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            679999999999999999999976654422  11   12245899999999999999999999999887776654

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.10  E-value=1.1e-10  Score=88.53  Aligned_cols=68  Identities=18%  Similarity=0.298  Sum_probs=53.8

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeeeee--------ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPLNL--------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~--------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      |+.|.|.|.+.|+|.|.|.|+|+|..+..        .++|..                               .....|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-------------------------------~~~~~L   49 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-------------------------------SQTGDL   49 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-------------------------------CCCCeE
Confidence            78999999999999999999999875421        111111                               123579


Q ss_pred             EecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .|.++++.|.|.|.|.|.|..|.....
T Consensus        50 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~   76 (90)
T cd05726          50 TITNVQRSDVGYYICQTLNVAGSILTK   76 (90)
T ss_pred             EEeeCChhhCEEEEEEEEcCCCceEEE
Confidence            999999999999999999999976554

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.10  E-value=2.5e-10  Score=83.12  Aligned_cols=67  Identities=13%  Similarity=0.207  Sum_probs=48.0

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc----
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE----   95 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~----   95 (616)
                      |.|.|.+.|+|.|.|+|+|+|.++..........                            ....++|.|..+..    
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~----------------------------~~~~g~l~i~~~~~~~~~   52 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTM----------------------------KPNTGTLVINIMNGEKAE   52 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEE----------------------------eCCCceEEEeccccCCCC
Confidence            5799999999999999999999875321111110                            11235677776654    


Q ss_pred             CCeEEEEEEEEcCCCCCCC
Q psy12426         96 GNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        96 ~~~~~y~c~a~n~~g~~~~  114 (616)
                      .|.|.|+|.|.|..|...+
T Consensus        53 ~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874          53 AYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CCCEEEEEEEEcCCCeEEe
Confidence            3789999999999997544

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.09  E-value=7.3e-10  Score=78.48  Aligned_cols=67  Identities=19%  Similarity=0.432  Sum_probs=54.8

Q ss_pred             EEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        235 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       235 ~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      .|.|.+.|.|.|.+.|++++..+....++  ..   ...|.|.++...|.|.|+|.|.|..|.......+.+
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTF--KR---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCCCEE--cc---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            58999999999999999999988654332  21   237999999999999999999999997766555543

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.09  E-value=1.5e-09  Score=84.81  Aligned_cols=91  Identities=26%  Similarity=0.416  Sum_probs=64.6

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-----CcEEEEecCCceEEEec--CCCCCCcEEE
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-----DRFKIVNDDKSTKLKVF--DSKRGDSGIY  287 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~l~i~--~l~~~~~g~y  287 (616)
                      +|.| ...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...     .+......+....+.+.  .+...|.|.|
T Consensus         1 ~P~i-~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           1 PPRI-VEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CCeE-EecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence            3555 34457788999999999999999999999999999887641     12222223322233332  3368899999


Q ss_pred             EEEEEcCCCC-ceeeEEEEE
Q psy12426        288 TLAVKNSWGT-DKGTAKVTV  306 (616)
Q Consensus       288 ~c~a~n~~g~-~~~~~~l~v  306 (616)
                      +|.|.|..|. .+..+.|.+
T Consensus        80 ~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          80 VCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEccccceecceEEEEe
Confidence            9999999998 455555554

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.09  E-value=7.7e-10  Score=83.91  Aligned_cols=76  Identities=25%  Similarity=0.390  Sum_probs=62.5

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeee--------cccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      |+.+.|.|.+.+.|.|.+.|++++..+        ....++.+...   ..|.|.+++..|.|.|+|.|.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT---GDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCC---CeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            678999999999999999999987643        12334544333   3799999999999999999999999998899


Q ss_pred             EEEEecC
Q psy12426        303 KVTVLDI  309 (616)
Q Consensus       303 ~l~v~~~  309 (616)
                      .|.|...
T Consensus        78 ~l~V~~~   84 (90)
T cd05726          78 YLEVTDV   84 (90)
T ss_pred             EEEEeec
Confidence            9988764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.08  E-value=1.3e-09  Score=81.69  Aligned_cols=79  Identities=16%  Similarity=0.286  Sum_probs=62.5

Q ss_pred             CeEEEEEEEeeecCc--eeEEEECCeeecccC---cEE-EEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        232 SNFEFDINVIGEPIP--TKEWLCNDITIISKD---RFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       232 ~~~~l~c~~~~~p~~--~~~W~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      +++.|.|.+.+.|.+  .+.|++++..+....   ++. .........|.|.+++..|+|.|+|.|.|..|....++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            367899999999987  679999998875332   221 11122345899999999999999999999999999999999


Q ss_pred             EecCC
Q psy12426        306 VLDIP  310 (616)
Q Consensus       306 v~~~p  310 (616)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.08  E-value=1.2e-09  Score=79.99  Aligned_cols=73  Identities=25%  Similarity=0.388  Sum_probs=60.6

Q ss_pred             EEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        235 EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       235 ~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      .|.|.+.|.|.|.+.|++++..+..+.+..+........|.|.++...|.|.|+|.|.|..|....++.|.|.
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            5899999999999999999998765543333333444589999999999999999999999999988888775

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.08  E-value=7.7e-10  Score=83.51  Aligned_cols=89  Identities=19%  Similarity=0.202  Sum_probs=68.9

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCe-eeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPH-VDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      ||.|.  ..+.+.+.+|++++|.|.+.+.|+|. |.|..++..|..  +|+|...-...                     
T Consensus         2 pP~i~--~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~---------------------   58 (98)
T cd05898           2 PPIIS--SEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTST---------------------   58 (98)
T ss_pred             CCEEe--cCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEcc---------------------
Confidence            78885  46788899999999999998888875 799998887754  57776653211                     


Q ss_pred             ccccCCCCCceEecCcccCC-eEEEEEEEEcCCCCCCCC
Q psy12426         78 CAQTEGDTPKGKVLDLIEGN-QYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~-~~~y~c~a~n~~g~~~~~  115 (616)
                         ..+....|.|.++...| .|.|.|.|.|..|.....
T Consensus        59 ---~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~   94 (98)
T cd05898          59 ---GSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAI   94 (98)
T ss_pred             ---CCCcEEEEEECCCccccCCcEEEEEEEeCCccceEE
Confidence               12345689999998877 789999999999977543

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.08  E-value=4.3e-10  Score=82.83  Aligned_cols=67  Identities=13%  Similarity=0.204  Sum_probs=55.8

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeec-cceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLR-PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~-G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      |++..|.+|+++.|.|.+.+ |.|.|+|+|||.+|..+ ++|.-                                ....
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~--------------------------------~~~~   49 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLL--------------------------------YRDG   49 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEE--------------------------------ECCc
Confidence            88999999999999999764 67899999999988743 33321                                1457


Q ss_pred             eEecCcccCCeEEEEEEEEcC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~  108 (616)
                      |.|.+++..|+|.|+|.|.+.
T Consensus        50 L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873          50 LLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             EEEeCCCHHHCEEEEEEEEec
Confidence            999999999999999999954

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.07  E-value=2.3e-09  Score=81.72  Aligned_cols=75  Identities=24%  Similarity=0.336  Sum_probs=56.9

Q ss_pred             CcceEEE---cCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCC-CCCcEEEEEEEEcCCCCc
Q psy12426        223 LSDIKVR---AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       223 ~~~~~v~---~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~-~~~~g~y~c~a~n~~g~~  298 (616)
                      +.++.+.   .|+.+.|.|.+.|.|.|.+.|++++..+...........+  ..|.|.++. ..|.|.|+|.|.|..|..
T Consensus         8 p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--g~L~i~~~~~~~D~G~Y~C~A~N~~G~~   85 (94)
T cd05848           8 PDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLID--GNLIISNPSEVKDSGRYQCLATNSIGSI   85 (94)
T ss_pred             CCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeC--CeEEEccCCccCcCEEEEEEEEcCCCeE
Confidence            3444443   4689999999999999999999999988644332222222  278898885 689999999999999976


Q ss_pred             e
Q psy12426        299 K  299 (616)
Q Consensus       299 ~  299 (616)
                      .
T Consensus        86 ~   86 (94)
T cd05848          86 L   86 (94)
T ss_pred             E
Confidence            3

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.07  E-value=4.3e-10  Score=82.50  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=53.2

Q ss_pred             EEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeEE
Q psy12426         21 KFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYE  100 (616)
Q Consensus        21 ~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~~  100 (616)
                      -|.|.+.|+|.|.|+|+|||+.|.....+.-.....                     ..........|.|.++.+.|.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~L~I~~~~~~D~G~   60 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYE---------------------VTTPTEYHGCLQFDNPTHVNNGN   60 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEee---------------------cccccccEEEEEECCCCcccCeE
Confidence            378999999999999999999987543321110000                     00001224579999999999999


Q ss_pred             EEEEEEcCCCCCCCC
Q psy12426        101 FRVLAVNKGGPGEPS  115 (616)
Q Consensus       101 y~c~a~n~~g~~~~~  115 (616)
                      |+|.|.|..|.....
T Consensus        61 YtC~A~N~~G~~~~~   75 (81)
T cd04971          61 YTLVASNEYGQDSKS   75 (81)
T ss_pred             EEEEEEeCCCCeeeE
Confidence            999999999987654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.07  E-value=1.3e-09  Score=79.00  Aligned_cols=70  Identities=26%  Similarity=0.376  Sum_probs=56.2

Q ss_pred             EEEEEEEeeecCceeEEEECCeeec--ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITII--SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v  306 (616)
                      +.|.|.+.|.|.|.+.|++++..+.  ...++.....   ..|.|.+++..|.|.|+|.|.|..|.. +..+.+.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~---g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRS---GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCC---cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            3689999999999999999998876  3345544333   379999999999999999999999974 55666554

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.07  E-value=2.9e-10  Score=81.61  Aligned_cols=65  Identities=22%  Similarity=0.324  Sum_probs=51.7

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY   99 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~   99 (616)
                      |.|.|.+.|.|.|.|.|+|+++.+... ...-                              ......|.|.++.+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~-~~~~------------------------------~~~~~~L~I~~v~~~D~G   49 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPN-RTKK------------------------------LNNNKTLQLDNVLESDDG   49 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCC-ceeE------------------------------EcCCCEEEEcccCHHhCE
Confidence            579999999999999999999876521 1110                              112568999999999999


Q ss_pred             EEEEEEEcCCCCCCCC
Q psy12426        100 EFRVLAVNKGGPGEPS  115 (616)
Q Consensus       100 ~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.|.|..|.....
T Consensus        50 ~Y~C~a~N~~G~~~~~   65 (71)
T cd05876          50 EYVCTAENSEGSARHH   65 (71)
T ss_pred             EEEEEEEcCCCeEEEE
Confidence            9999999999976543

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.06  E-value=3.1e-09  Score=82.03  Aligned_cols=82  Identities=16%  Similarity=0.281  Sum_probs=65.9

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeeccc--CcEEEEec----CCceEEEecCCCCCC-cEEEEEEEEcC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISK--DRFKIVND----DKSTKLKVFDSKRGD-SGIYTLAVKNS  294 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~l~~~~-~g~y~c~a~n~  294 (616)
                      +....+..|+.+.|.|.+.|.|.| .+.|++++..+...  .++.+...    +..+.|.|.++...| .|.|.|.|.|.
T Consensus         8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758           8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence            355678999999999999999999 69999999877543  46665543    233589999999954 89999999999


Q ss_pred             CCCceeeEEE
Q psy12426        295 WGTDKGTAKV  304 (616)
Q Consensus       295 ~g~~~~~~~l  304 (616)
                      .|.....+.|
T Consensus        88 ~G~~~~~~~L   97 (98)
T cd05758          88 FGSGTAIISL   97 (98)
T ss_pred             CCcccEEEEe
Confidence            9987766554

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.06  E-value=4.1e-10  Score=80.56  Aligned_cols=64  Identities=28%  Similarity=0.403  Sum_probs=51.8

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY   99 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~   99 (616)
                      |+|.|.+.|.|.|.|.|+|+++.+. .+.|.-.                               ....|.|.++.+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~-~~~~~~~-------------------------------~~~~L~I~~v~~~D~G   48 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELP-KGRAEIL-------------------------------DDKSLKIRNVTAGDEG   48 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCC-CCcEEEe-------------------------------eCCEEEECcCChhHCE
Confidence            5799999999999999999987665 3333222                               2457999999999999


Q ss_pred             EEEEEEEcCCCCCCCC
Q psy12426        100 EFRVLAVNKGGPGEPS  115 (616)
Q Consensus       100 ~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.|.|..|.....
T Consensus        49 ~Y~C~a~N~~G~~~~~   64 (69)
T cd05725          49 SYTCEAENMVGKIEAS   64 (69)
T ss_pred             EEEEEEEcCCCcEEEE
Confidence            9999999999976443

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.06  E-value=1.5e-09  Score=79.25  Aligned_cols=71  Identities=18%  Similarity=0.434  Sum_probs=55.4

Q ss_pred             EEEEEEEeeecCceeEEEECCeeecccC-cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee--eEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIISKD-RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG--TAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~--~~~l~v  306 (616)
                      ++|.|.+.|.|.|.+.|+|++..+.... ++.+..  ....|.|.++++.|.|.|+|.|.|..|....  .+.|.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            4689999999999999999999876543 333332  2348999999999999999999999997643  444443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.06  E-value=5.5e-10  Score=83.48  Aligned_cols=73  Identities=18%  Similarity=0.301  Sum_probs=58.0

Q ss_pred             ceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEe
Q psy12426         11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKV   90 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i   90 (616)
                      .+.+..|+++.|.|.+.|.|.|.+.|+|++..+.....+. .                             ......|.|
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~-~-----------------------------~~~~~~L~i   52 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE-S-----------------------------RKKKWTLSL   52 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce-e-----------------------------cCceEEEEE
Confidence            3557789999999999999999999999998776322210 0                             112357999


Q ss_pred             cCcccCCeEEEEEEEEcCCCCCC
Q psy12426         91 LDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        91 ~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      .++.+.|.|.|.|.|.|..|...
T Consensus        53 ~~v~~~D~G~Y~C~a~N~~G~~~   75 (82)
T cd05856          53 KNLKPEDSGKYTCHVSNRAGEIN   75 (82)
T ss_pred             ccCChhhCEEEEEEEEcCCccEE
Confidence            99999999999999999998654

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.06  E-value=8.4e-10  Score=83.52  Aligned_cols=80  Identities=19%  Similarity=0.290  Sum_probs=53.9

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCC----eeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGG----NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD   92 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~----~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~   92 (616)
                      |+.++|.|.+.|.|.|.|+|+|++    ..+...|.-..           .+....        ...........|.|.+
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~-----------~~~~~~--------~~~~~~~~~~~L~I~~   61 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYV-----------TVLKVA--------GINTTDNESEVLYLRN   61 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceE-----------EEEEec--------CCcccccccceEEEec
Confidence            789999999999999999999964    23221121000           011000        0000012245789999


Q ss_pred             cccCCeEEEEEEEEcCCCCCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      +.+.|+|.|.|.|.|..|....+
T Consensus        62 v~~~D~G~Y~C~A~N~~G~~~~s   84 (90)
T cd04974          62 VSFDDAGEYTCLAGNSIGPSHHS   84 (90)
T ss_pred             cccccCcEEEEEeecccCcccCC
Confidence            99999999999999999987766

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.05  E-value=3.4e-10  Score=80.26  Aligned_cols=58  Identities=19%  Similarity=0.264  Sum_probs=47.7

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeec-cceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCe
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLR-PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ   98 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~-G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~   98 (616)
                      +.|.|.+.|.|.|.+.|+|+|.++... ..|.                                ....+|.|.++...|+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~--------------------------------~~~~~L~I~~v~~~D~   48 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYH--------------------------------VDGYSLVIKDVTEEDA   48 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEE--------------------------------eCCCEEEECcCCHHHC
Confidence            479999999999999999999988643 3331                                1135799999999999


Q ss_pred             EEEEEEEEcCC
Q psy12426         99 YEFRVLAVNKG  109 (616)
Q Consensus        99 ~~y~c~a~n~~  109 (616)
                      |.|.|.|.|..
T Consensus        49 G~YtC~a~~~~   59 (72)
T cd07702          49 GIYTILLGIKQ   59 (72)
T ss_pred             EEEEEEEEccc
Confidence            99999999863

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.05  E-value=2.5e-09  Score=81.06  Aligned_cols=73  Identities=22%  Similarity=0.381  Sum_probs=56.2

Q ss_pred             CcceEEEc---CCeEEEEEEEeeecCceeEEEECCeeecc-cCcEEEEecCCceEEEecCCC-CCCcEEEEEEEEcCCCC
Q psy12426        223 LSDIKVRA---GSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       223 ~~~~~v~~---g~~~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~-~~~~g~y~c~a~n~~g~  297 (616)
                      +.+..+.+   +..+.|.|.+.|.|.|.++|++++..+.. ..++.+. .   ..|.|.++. ..|.|.|+|.|.|..|.
T Consensus         8 P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~-~---g~L~I~~~~~~~D~G~Y~C~A~N~~G~   83 (93)
T cd05849           8 PIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV-G---GNLVINNPDKYKDAGRYVCIVSNIYGK   83 (93)
T ss_pred             CCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE-C---CEEEECcCCcCCCCEEEEEEEEeCcce
Confidence            34444444   34799999999999999999999988753 3444332 2   389999985 58999999999999997


Q ss_pred             ce
Q psy12426        298 DK  299 (616)
Q Consensus       298 ~~  299 (616)
                      ..
T Consensus        84 ~~   85 (93)
T cd05849          84 VR   85 (93)
T ss_pred             EE
Confidence            63

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.05  E-value=1.3e-09  Score=77.98  Aligned_cols=69  Identities=36%  Similarity=0.563  Sum_probs=56.6

Q ss_pred             EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.|.+.|.|.|.+.|++++..+. ..++.+...   ..|.|.+++..|.|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~-~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELP-KGRAEILDD---KSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCC-CCcEEEeeC---CEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            4689999999999999999987664 344444433   38999999999999999999999999887777653

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.04  E-value=5.2e-10  Score=83.30  Aligned_cols=71  Identities=10%  Similarity=0.184  Sum_probs=54.6

Q ss_pred             CeEEEEEEEeeecCC--eeeeeeCCeeeee---ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426         18 TTLKFDANIIGEPVP--HVDWRAGGNPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD   92 (616)
Q Consensus        18 ~~v~l~C~~~g~P~p--~v~W~~~~~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~   92 (616)
                      +.+.|.|.+.|+|.|  .|+|+|||..+..   .+.|.-..             +              .....+|.|.+
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~-------------~--------------~~~~~~L~I~~   53 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME-------------V--------------KETIGDLVIVN   53 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE-------------e--------------cceEeEEEEcc
Confidence            578999999999998  5899999998864   22331110             0              11246899999


Q ss_pred             cccCCeEEEEEEEEcCCCCCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ++..|.|.|.|.|.|..|....+
T Consensus        54 v~~~D~G~YtC~A~n~~g~~~~~   76 (85)
T cd05854          54 AQLSHAGTYTCTAQTVVDSASAS   76 (85)
T ss_pred             CChhhCeEEEEEEecCCCCEEEE
Confidence            99999999999999999977655

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.04  E-value=1.1e-09  Score=79.94  Aligned_cols=71  Identities=23%  Similarity=0.421  Sum_probs=56.1

Q ss_pred             EEEEEEEeeecCceeEEEECCeeec---ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITII---SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~---~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.|.+.|.|.|.+.|++++....   ...++.+...  ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPE--DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecC--CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            3689999999999999999986422   1233443322  248999999999999999999999998888877765

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.04  E-value=4.7e-10  Score=84.14  Aligned_cols=78  Identities=12%  Similarity=0.106  Sum_probs=63.4

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEee-ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccC
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIG-EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      ++.+.|+...+.+|++++|.|.+.+ .|.|.|.|+|++..+... .                                 .
T Consensus         3 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-~---------------------------------~   48 (85)
T cd05754           3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR-A---------------------------------M   48 (85)
T ss_pred             EEecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc-c---------------------------------c
Confidence            4567899999999999999999864 789999999999765410 0                                 1


Q ss_pred             CCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .....|.|.++.+.|+|.|.|.|.|..|....+
T Consensus        49 ~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~   81 (85)
T cd05754          49 DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT   81 (85)
T ss_pred             ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence            124589999999999999999999999876554

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.04  E-value=4.5e-09  Score=80.12  Aligned_cols=73  Identities=22%  Similarity=0.314  Sum_probs=56.9

Q ss_pred             CcceEEEcC---CeEEEEEEEeeecCceeEEEECCeeeccc--CcEEEEecCCceEEEecCCC-CCCcEEEEEEEEcCCC
Q psy12426        223 LSDIKVRAG---SNFEFDINVIGEPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWG  296 (616)
Q Consensus       223 ~~~~~v~~g---~~~~l~c~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~-~~~~g~y~c~a~n~~g  296 (616)
                      +.++.+.+|   +.+.|.|.+.|.|.+.++|++++..+...  .++.+. .   ..|.|.++. ..|.|.|+|.|.|..|
T Consensus         8 P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~---g~L~I~~~~~~~D~G~Y~C~A~N~~G   83 (94)
T cd05850           8 PSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV-A---GNLVINNPQKARDAGSYQCLAINRCG   83 (94)
T ss_pred             CCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE-C---CeEEEccCCccCcCEEEEEEEEcCcC
Confidence            455555555   57999999999999999999999987633  344333 2   278888865 5899999999999999


Q ss_pred             Cce
Q psy12426        297 TDK  299 (616)
Q Consensus       297 ~~~  299 (616)
                      ...
T Consensus        84 ~~~   86 (94)
T cd05850          84 TVV   86 (94)
T ss_pred             cEE
Confidence            764

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.04  E-value=2.1e-09  Score=78.15  Aligned_cols=73  Identities=19%  Similarity=0.400  Sum_probs=58.4

Q ss_pred             CCeEEEEEEEeeecCceeEEEE-CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLC-NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+......   ..|.|.++...|.|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDN---GTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecC---CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6789999999999999999997 5655554444444333   37999999999999999999999998877766653

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.03  E-value=2.5e-09  Score=80.69  Aligned_cols=74  Identities=24%  Similarity=0.430  Sum_probs=61.4

Q ss_pred             CcceEEEcCCeEEEEEEE-eeecCceeEEEECCeeecc-cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        223 LSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~-~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      +.+..+..|+++.|.|.+ .+.|.+.+.|++++..+.. ..++.+..   ...|.|.+++..|.|.|+|.|.|..|...
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence            456788899999999998 7899999999999988765 34444433   23899999999999999999999988753

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.03  E-value=2.2e-09  Score=81.36  Aligned_cols=76  Identities=25%  Similarity=0.322  Sum_probs=58.1

Q ss_pred             CCeEEEEEEEeeecCceeEEEEC----CeeecccCc--EEEEec-------CCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCN----DITIISKDR--FKIVND-------DKSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~----~~~~~~~~~--~~~~~~-------~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      |+.+.|.|.+.+.|.|.+.|+++    +..+..+..  ..+...       .....|.|.+++.+|.|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    333332221  111111       12358999999999999999999999999


Q ss_pred             ceeeEEEEE
Q psy12426        298 DKGTAKVTV  306 (616)
Q Consensus       298 ~~~~~~l~v  306 (616)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            988888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.03  E-value=4.6e-09  Score=79.73  Aligned_cols=82  Identities=26%  Similarity=0.504  Sum_probs=63.0

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEE-CCeeecccCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEcCCCC-ce
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLC-NDITIISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSWGT-DK  299 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~  299 (616)
                      +....+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.+.. ......|+|.++..+|.|.|+|.|.|..|. ..
T Consensus         7 p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~   85 (92)
T cd04977           7 PSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESE   85 (92)
T ss_pred             cCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcce
Confidence            35577899999999999999975 999997 566555544444433 345579999999999999999999998654 45


Q ss_pred             eeEEEE
Q psy12426        300 GTAKVT  305 (616)
Q Consensus       300 ~~~~l~  305 (616)
                      .++.|.
T Consensus        86 ~sv~l~   91 (92)
T cd04977          86 ATVNLK   91 (92)
T ss_pred             eEEEEE
Confidence            555553

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.01  E-value=1e-09  Score=79.95  Aligned_cols=65  Identities=18%  Similarity=0.260  Sum_probs=47.8

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcc---
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLI---   94 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~---   94 (616)
                      +.|.|.+.|+|.|.|+|+|+|..+..  .+.|.-                              .....+|.|..+.   
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~------------------------------~~~~~~L~i~~~~~~~   50 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM------------------------------RRRSGTLVIDFSGGGR   50 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE------------------------------eCCCceEEEeccCCCC
Confidence            57999999999999999999987642  233321                              1124577777653   


Q ss_pred             c-CCeEEEEEEEEcCCCCCCC
Q psy12426         95 E-GNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        95 ~-~~~~~y~c~a~n~~g~~~~  114 (616)
                      + .|+|.|+|.|.|..|....
T Consensus        51 ~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875          51 PEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CCCCCEEEEEEEEeccceEEE
Confidence            2 4689999999999996543

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.01  E-value=2.3e-09  Score=80.09  Aligned_cols=78  Identities=28%  Similarity=0.354  Sum_probs=62.4

Q ss_pred             eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      +.+..|+.+.|.|.+.+.|.|.+.|++++..+.......  .......|.|.+++++|+|.|+|.|.|..|.....+.+.
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            446679999999999999999999999988765433222  122345899999999999999999999999877666554

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.01  E-value=2.1e-09  Score=77.61  Aligned_cols=70  Identities=26%  Similarity=0.361  Sum_probs=56.4

Q ss_pred             EEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.|.+.|.|.|.+.|++++..+... +....  .....|.|.++...|.|.|+|.|.|..|.....+.+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            368999999999999999998876433 22222  23348999999999999999999999998887777665

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.01  E-value=1.8e-09  Score=81.70  Aligned_cols=76  Identities=28%  Similarity=0.379  Sum_probs=57.6

Q ss_pred             CCeEEEEEEEeeecCceeEEEECC----eeeccc--CcEEEEe-------cCCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCND----ITIISK--DRFKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~----~~~~~~--~~~~~~~-------~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      |+.+.|.|.+.|.|.|.++|+|++    ..+...  .......       .+....|.|.++..+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            578999999999999999999964    222211  1111111       122348999999999999999999999999


Q ss_pred             ceeeEEEEE
Q psy12426        298 DKGTAKVTV  306 (616)
Q Consensus       298 ~~~~~~l~v  306 (616)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            988888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.01  E-value=1.1e-09  Score=83.07  Aligned_cols=80  Identities=20%  Similarity=0.272  Sum_probs=53.8

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeC----CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAG----GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD   92 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~----~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~   92 (616)
                      |+.+.|.|.+.|.|.|.|+|+|+    |..+...|...-.           +...  .+      ..........|.|.+
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~-----------~~~~--~~------~~~~~~~~~~L~I~~   61 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVT-----------VLKT--AG------VNTTDKEMEVLYLRN   61 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEE-----------Eecc--CC------ceecCCceeEEEEcc
Confidence            78999999999999999999995    3333322321111           0000  00      000011125799999


Q ss_pred             cccCCeEEEEEEEEcCCCCCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ++..|.|.|+|.|.|..|....+
T Consensus        62 v~~~D~G~Y~C~A~N~~G~~~~~   84 (90)
T cd05858          62 VTFEDAGEYTCLAGNSIGISHHS   84 (90)
T ss_pred             CCHHHCEEEEEEEEeCCCcccce
Confidence            99999999999999999977655

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.00  E-value=9.1e-10  Score=80.28  Aligned_cols=66  Identities=14%  Similarity=0.221  Sum_probs=49.8

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeee---ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG   96 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~   96 (616)
                      ++|.|.+.|.|.|.|+|+|+|.....   ..+|.-.                              .....|.|.++.+.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~------------------------------~~~~~L~I~~~~~~   50 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM------------------------------PEDDVFFIVDVKIE   50 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEe------------------------------cCCCEEEEeeCCcc
Confidence            57999999999999999999864221   1222111                              12357899999999


Q ss_pred             CeEEEEEEEEcCCCCCCCC
Q psy12426         97 NQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        97 ~~~~y~c~a~n~~g~~~~~  115 (616)
                      |.|.|.|.|.|..|.....
T Consensus        51 D~G~Y~C~A~N~~G~~~~~   69 (75)
T cd05763          51 DTGVYSCTAQNTAGSISAN   69 (75)
T ss_pred             cCEEEEEEEEcCCCEEEee
Confidence            9999999999999975444

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.99  E-value=1.6e-09  Score=79.32  Aligned_cols=68  Identities=13%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY   99 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~   99 (616)
                      +.|.|.+.|.|.|.|+|+|+++.+.....+....                            ......|.|.++...|.|
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~----------------------------~~~~~~l~I~~~~~~D~G   52 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTL----------------------------IANGSELHISNVRYEDTG   52 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEE----------------------------eCCCCEEEECcCCcccCE
Confidence            4799999999999999999999876322222211                            112357999999999999


Q ss_pred             EEEEEEEcCCCCCCCC
Q psy12426        100 EFRVLAVNKGGPGEPS  115 (616)
Q Consensus       100 ~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.|.|..|.....
T Consensus        53 ~Y~C~a~N~~G~~~~~   68 (76)
T cd05736          53 AYTCIAKNEAGVDEDI   68 (76)
T ss_pred             EEEEEEEcCCCCcceE
Confidence            9999999999987655

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.99  E-value=4.7e-09  Score=76.80  Aligned_cols=70  Identities=17%  Similarity=0.317  Sum_probs=56.7

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      .+.++.+..|+.+.|.|.+.|.|.| .+.|.+++..+...      .....+.|.|.++.  |.|.|.|.|.|..|...
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~------~~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~   74 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP------PAPSPSVLNVPGLN--ETSKFSCEAHNAKGVTT   74 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC------CCCCCCEEEEcccc--CCeEEEEEEEeccCcEE
Confidence            3567889999999999999999999 79999999887531      11223478888874  78999999999999654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.99  E-value=1.4e-09  Score=79.16  Aligned_cols=67  Identities=18%  Similarity=0.267  Sum_probs=52.3

Q ss_pred             CCeEEEEEEEeeecCCeeeeee-CCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRA-GGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE   95 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~-~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~   95 (616)
                      |+.+.|.|.+.|.|.|.|.|++ ++..+.....+.-                               ....+|.|..+..
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-------------------------------~~~~~L~i~~~~~   49 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV-------------------------------YDNGTLDILITTV   49 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE-------------------------------ecCCEEEEEECCh
Confidence            7899999999999999999997 5554442222211                               1245789999999


Q ss_pred             CCeEEEEEEEEcCCCCCCC
Q psy12426         96 GNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        96 ~~~~~y~c~a~n~~g~~~~  114 (616)
                      .|.|.|.|.|.|..|....
T Consensus        50 ~D~G~Y~C~a~N~~G~~~~   68 (74)
T cd05764          50 KDTGSFTCIASNAAGEATA   68 (74)
T ss_pred             hhCEEEEEEEECCCCeEEE
Confidence            9999999999999997543

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.96  E-value=6.4e-09  Score=79.85  Aligned_cols=80  Identities=24%  Similarity=0.366  Sum_probs=60.6

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCc--EEEEecCCceEEEecCC-----CCCCcEEEEEEEEcC-
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDS-----KRGDSGIYTLAVKNS-  294 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~l-----~~~~~g~y~c~a~n~-  294 (616)
                      |.+..+..|+++.|.|.+.+.|.+.+.|+|++..+.....  ..+...+   .+.|.++     .+.|.|.|+|.|.|. 
T Consensus         6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~---~l~i~~v~~~~~~~~D~G~Y~C~a~N~~   82 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG---SLLITSVVHSKHNKPDEGFYQCVAQNDS   82 (95)
T ss_pred             CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC---eEEEeeeeccCCCCCcCEEEEEEEECCc
Confidence            4567788999999999999999999999999998764432  3332232   5666665     578999999999999 


Q ss_pred             CCCc-eeeEEEE
Q psy12426        295 WGTD-KGTAKVT  305 (616)
Q Consensus       295 ~g~~-~~~~~l~  305 (616)
                      .|.. +..+.+.
T Consensus        83 ~G~~~s~~~~l~   94 (95)
T cd05722          83 LGSIVSRTARLT   94 (95)
T ss_pred             cCcEEEeeeEEe
Confidence            8876 3344443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.95  E-value=3.9e-09  Score=77.16  Aligned_cols=69  Identities=28%  Similarity=0.399  Sum_probs=56.0

Q ss_pred             EEEEEEEee-ecCceeEEEECCeeecccCcEE---EEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        234 FEFDINVIG-EPIPTKEWLCNDITIISKDRFK---IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       234 ~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~---~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      +.|.|.+.+ .|.+.+.|++++..+....+..   +........|.|.++...|.|.|+|.|.|..|....++
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            368999999 9999999999998886544322   33344457899999999999999999999999876554

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.95  E-value=2.7e-09  Score=78.65  Aligned_cols=64  Identities=13%  Similarity=0.166  Sum_probs=48.8

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeee--------eccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEec
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLN--------LRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVL   91 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~--------~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~   91 (616)
                      |+|.|.+.|.|.|.|+|+|++....        ..|++.-                               ....+|.|.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~-------------------------------~~~~~L~I~   49 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL-------------------------------LSNGSLLIK   49 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE-------------------------------ecCCeEEEC
Confidence            5899999999999999999754221        1122211                               124689999


Q ss_pred             CcccCCeEEEEEEEEcCCCCCCC
Q psy12426         92 DLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        92 ~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                      ++...|.|.|.|.|.|..|....
T Consensus        50 ~v~~~D~G~Y~C~a~N~~G~~~s   72 (79)
T cd05734          50 HVLEEDSGYYLCKVSNDVGADAS   72 (79)
T ss_pred             cCCcccCEEEEEEEEeCCCCCCc
Confidence            99999999999999999997643

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.95  E-value=3.3e-09  Score=80.44  Aligned_cols=81  Identities=22%  Similarity=0.201  Sum_probs=62.7

Q ss_pred             cceEEEcCCeEEEEEEEee-----ecCceeEEEECCeeeccc--CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        224 SDIKVRAGSNFEFDINVIG-----EPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~-----~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      ....+.+|+.+.|.|.+.+     .|.+.+.|++++..+...  ....+...  ...|.|.++..+|+|.|+|.+.|..|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCc
Confidence            3566789999999999999     688899999998754321  11222222  24899999999999999999999999


Q ss_pred             CceeeEEEEE
Q psy12426        297 TDKGTAKVTV  306 (616)
Q Consensus       297 ~~~~~~~l~v  306 (616)
                      ....++.|.|
T Consensus        85 ~~~~~~~L~v   94 (94)
T cd05756          85 CMKVSISLTV   94 (94)
T ss_pred             cEEEEEEEEC
Confidence            8877776653

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.94  E-value=1.8e-09  Score=78.99  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=53.1

Q ss_pred             EEEEEEEee-ecCCeeeeeeCCeeeeeccceEE-EeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCC
Q psy12426         20 LKFDANIIG-EPVPHVDWRAGGNPLNLRPIWEK-CAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN   97 (616)
Q Consensus        20 v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~Y~C-~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~   97 (616)
                      +.|.|.+.| .|.|.++|+|+|+.+.....+.- ...+                          ......|.|.++.+.|
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~--------------------------~~~~~~L~I~~~~~~D   54 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRN--------------------------KKKNSELQINKAKLAD   54 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEe--------------------------cCceEEEEEccCCccc
Confidence            479999999 99999999999998874332210 0000                          1124679999999999


Q ss_pred             eEEEEEEEEcCCCCCCCC
Q psy12426         98 QYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        98 ~~~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.|.|.|..|....+
T Consensus        55 ~G~Y~C~a~N~~G~~~~~   72 (75)
T cd05750          55 SGEYTCVVENILGNDTVT   72 (75)
T ss_pred             CeEEEEEEEEcCCceeEE
Confidence            999999999999976543

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.93  E-value=6.3e-09  Score=78.82  Aligned_cols=72  Identities=7%  Similarity=0.083  Sum_probs=55.7

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee--------ccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL--------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~--------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      -+++++.+|++|.|.|.+.|.|.|.|.|+|+++.+..        .++|.-..                           
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~---------------------------   56 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK---------------------------   56 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe---------------------------
Confidence            4688999999999999999999999999998875422        22221110                           


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      .......|.|.++...|+|.|.|.+..
T Consensus        57 ~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882          57 STPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             CCCceEEEEECCCCcccCEEEEEEEEe
Confidence            011246899999999999999999985

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.93  E-value=5.2e-09  Score=79.70  Aligned_cols=73  Identities=7%  Similarity=0.051  Sum_probs=55.4

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeee--------eeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL--------NLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l--------~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ++++.+.+|++|.|.|.+.|.|.|.|.|++.++.+        ...++|...-.                          
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~--------------------------   57 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA--------------------------   57 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEEC--------------------------
Confidence            67899999999999999999999999999744321        11334432100                          


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                       .....+|.|.++++.|+|.|.|.+.+.
T Consensus        58 -~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701          58 -SWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             -CCCcEEEEECcCCcccCEEEEEEeEee
Confidence             123468999999999999999999964

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.93  E-value=2.1e-09  Score=77.60  Aligned_cols=64  Identities=23%  Similarity=0.284  Sum_probs=50.4

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY   99 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~   99 (616)
                      |.|.|.+.|.|.|.|+|+|+++.+.. +... .                             ......|.|.++...|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~-~-----------------------------~~~~~~L~i~~v~~~D~G   49 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPA-DRTK-F-----------------------------ENFNKTLKIDNVSEEDDG   49 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCC-Ccee-E-----------------------------ecCCCEEEECCCCHHHCE
Confidence            57999999999999999999987652 2110 0                             112457999999999999


Q ss_pred             EEEEEEEcCCCCCCC
Q psy12426        100 EFRVLAVNKGGPGEP  114 (616)
Q Consensus       100 ~y~c~a~n~~g~~~~  114 (616)
                      .|.|.|.|..|....
T Consensus        50 ~Y~C~a~N~~G~~~~   64 (71)
T cd05731          50 EYRCTASNSLGSARH   64 (71)
T ss_pred             EEEEEEEeCCceEEE
Confidence            999999999986543

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.92  E-value=2.1e-09  Score=81.45  Aligned_cols=79  Identities=8%  Similarity=-0.017  Sum_probs=59.2

Q ss_pred             CCceEecCCCeEEEEEEEee-----ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIG-----EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g-----~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      .....+.+|+.+.|.|.+.|     .|.|.|.|||++..+......     +      .++                 ..
T Consensus         6 ~~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~-----~------~r~-----------------~~   57 (94)
T cd05756           6 DKKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEE-----R------SRM-----------------HQ   57 (94)
T ss_pred             eeEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccc-----c------cee-----------------ee
Confidence            45678899999999999999     799999999999765421000     0      000                 01


Q ss_pred             CCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ....|.|.++.+.|+|.|.|.+.|..|....+
T Consensus        58 ~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~   89 (94)
T cd05756          58 QKDLLWFLPAALEDSGLYTCVVRNSTYCMKVS   89 (94)
T ss_pred             cCCeEEEccCCcccCeEEEEEEcCCCccEEEE
Confidence            23579999999999999999999988865443

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.92  E-value=2.7e-09  Score=79.58  Aligned_cols=80  Identities=10%  Similarity=0.092  Sum_probs=63.6

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEE-EeeecCCeeeeeeCCeee-eeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDAN-IIGEPVPHVDWRAGGNPL-NLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~l-~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      .|++..+.++.+.|.+|+.+.|.|. ..|.|.|.|.|++++... ...+++               .             
T Consensus         2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri---------------~-------------   53 (95)
T cd05845           2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERV---------------S-------------   53 (95)
T ss_pred             CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccE---------------E-------------
Confidence            3778778889999999999999998 799999999999876542 212221               1             


Q ss_pred             cccCCCCCceEecCcccCCeE-EEEEEEEcCCCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQY-EFRVLAVNKGGP  111 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~-~y~c~a~n~~g~  111 (616)
                         ...++.|.|.++.+.|.| .|.|.|.|....
T Consensus        54 ---~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          54 ---MGQNGNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             ---ECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence               223589999999999999 799999986543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.91  E-value=6.4e-09  Score=77.34  Aligned_cols=73  Identities=23%  Similarity=0.454  Sum_probs=55.7

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCe---e-ecccC----cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDI---T-IISKD----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~---~-~~~~~----~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      |+.+.|.|.+.|.|.|.+.|++++.   . +....    ++..   .....|.|.+++..|.|.|.|.|.|..|.....+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   77 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV---TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF   77 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE---ccccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence            6789999999999999999999742   1 11111    1111   1234899999999999999999999999988877


Q ss_pred             EEEE
Q psy12426        303 KVTV  306 (616)
Q Consensus       303 ~l~v  306 (616)
                      .|.|
T Consensus        78 ~l~v   81 (81)
T cd05765          78 PLSV   81 (81)
T ss_pred             EEeC
Confidence            7754

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.91  E-value=1.1e-08  Score=72.48  Aligned_cols=62  Identities=24%  Similarity=0.351  Sum_probs=49.7

Q ss_pred             EEEEEEeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        235 EFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       235 ~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      .|.|.+.|.|.|++.|++++..+... .++..  .+  .+|.|.+++.+|+|.|+|.|.|.......
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~--~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~   64 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV--DG--YSLVIKDVTEEDAGIYTILLGIKQYNLFK   64 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEECCCCCcEEEe--CC--CEEEECcCCHHHCEEEEEEEEccccceEe
Confidence            68999999999999999999887654 33322  22  38999999999999999999997554433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.91  E-value=4.1e-09  Score=79.76  Aligned_cols=72  Identities=11%  Similarity=0.121  Sum_probs=56.8

Q ss_pred             CCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccc--eEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPI--WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~--Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      +++.+.+.+|+++.|.|.+.+ |.|.+.|+|++..+...+.  ..+..                              ..
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~------------------------------~~   50 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV------------------------------TE   50 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE------------------------------cC
Confidence            477889999999999999987 8889999999987764321  11111                              13


Q ss_pred             CceEecCcccCCeEEEEEEEEcCCC
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      ..|.|.++.+.|+|.|.|.|.+..+
T Consensus        51 ~~L~I~~~~~~D~G~Y~C~a~~~~~   75 (89)
T cd04979          51 DGLLIRSVSPADAGVYTCQSVEHGF   75 (89)
T ss_pred             CCEEEccCCHHHCEEEEEEEecCcc
Confidence            4689999999999999999997655

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.91  E-value=4.1e-09  Score=78.97  Aligned_cols=71  Identities=8%  Similarity=0.165  Sum_probs=53.7

Q ss_pred             CeEEEEEEEeeecCC--eeeeeeCCeeeeec---cceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426         18 TTLKFDANIIGEPVP--HVDWRAGGNPLNLR---PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD   92 (616)
Q Consensus        18 ~~v~l~C~~~g~P~p--~v~W~~~~~~l~~~---G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~   92 (616)
                      +.+.|.|.+.|+|.|  .+.|+|+|..+..+   +.|.=.-                           .....+.|.|.+
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~---------------------------~~~~~~~L~I~~   53 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVG---------------------------GKDSNGDLMIRN   53 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEe---------------------------cccccceEEEcc
Confidence            579999999999998  56899999988631   2221110                           012356899999


Q ss_pred             cccCCeEEEEEEEEcCCCCCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ++..|+|.|.|.|.|..|....+
T Consensus        54 v~~~D~G~Y~C~a~n~~g~~~~~   76 (85)
T cd04970          54 AQLKHAGKYTCTAQTVVDSLSAS   76 (85)
T ss_pred             CCHHhCeeeEEEEecCCCcEEEE
Confidence            99999999999999988865444

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.91  E-value=3.2e-09  Score=79.02  Aligned_cols=72  Identities=19%  Similarity=0.322  Sum_probs=52.0

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCe---eeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGN---PLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD   92 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~---~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~   92 (616)
                      |+.+.|.|.+.|.|.|.|+|+|++.   .+.. .+.+.           ..+.                ......|.|.+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~-----------~~~~----------------~~~~~~L~I~~   53 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR-----------GNVV----------------VTNIGQLVIYN   53 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCccc-----------CCEE----------------EccccEEEEcc
Confidence            7899999999999999999999842   1110 00000           0000                11246899999


Q ss_pred             cccCCeEEEEEEEEcCCCCCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      +.+.|.|.|.|.|.|..|.....
T Consensus        54 ~~~~D~G~Y~C~a~N~~G~~~~~   76 (81)
T cd05765          54 AQPQDAGLYTCTARNSGGLLRAN   76 (81)
T ss_pred             CCcccCEEEEEEEecCCceEEEE
Confidence            99999999999999999976544

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.90  E-value=5.8e-09  Score=76.20  Aligned_cols=64  Identities=22%  Similarity=0.281  Sum_probs=49.5

Q ss_pred             EEEEEEEeeecCceeEEEECCeeeccc--CcEEEEecCCceEEEecCCCC----CCcEEEEEEEEcCCCCce
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSKR----GDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~----~~~g~y~c~a~n~~g~~~  299 (616)
                      +.|.|.+.|.|.|.++|++++..+...  .++.+.  .....|.|.++..    .|.|.|+|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~--~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK--PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe--CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            468999999999999999999887543  233332  2334888888754    689999999999999753

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.87  E-value=1.4e-08  Score=73.86  Aligned_cols=65  Identities=15%  Similarity=0.266  Sum_probs=48.3

Q ss_pred             EEEEEEEeeecCceeEEEECCeeeccc--CcEEEEecCCceEEEecCCCCC----CcEEEEEEEEcCCCCcee
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSKRG----DSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~~----~~g~y~c~a~n~~g~~~~  300 (616)
                      +.|.|.+.|.|.|.++|++++..+...  .++.+..  ...+|.|..+...    |.|.|+|.|.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~--~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKP--NTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeC--CCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            468999999999999999999876432  2333332  2337778777643    789999999999997543

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>KOG4802|consensus

Probab=98.87  E-value=9.6e-08  Score=87.40  Aligned_cols=178  Identities=19%  Similarity=0.257  Sum_probs=118.3

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEE------E------EeCCCCCEEEccccc-cceEEeccccCC
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE------K------MDMETGRWVPMGDVS-GTYTRAENLIEG  376 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~------~------~~~~~~~~~~~~~~~-~~~~~i~~L~~~  376 (616)
                      +.+|.+.+........+..+.|..-.     .+.-|.+.      +      +......|+.+.... ...+...++.||
T Consensus       145 ~l~Pr~k~~y~r~~~g~~av~w~~~~-----~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPg  219 (516)
T KOG4802|consen  145 QLPPRPKILYFRRSRGSHAVDWKIES-----SLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPG  219 (516)
T ss_pred             CCCCcchhhhhhhccCceeeeeeecc-----ccceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcc
Confidence            34444433344455666888887421     11222211      1      123345677766533 347888899999


Q ss_pred             CeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCC---eEEEEecCCCCCCCCcceeEEEEEeeCCC
Q psy12426        377 HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD---HVDLEWTPPKKDGGSPISQYIIEKKPKYG  453 (616)
Q Consensus       377 ~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~---~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~  453 (616)
                      ..|+|++.|+|..|.-.+++++..........+|.+|.++.+..+..+   ...|-|.++..  ..++.+|.|.|.-.-.
T Consensus       220 Rwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~s--dlPv~~Yki~Ws~~v~  297 (516)
T KOG4802|consen  220 RWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKS--DLPVEKYKITWSLYVN  297 (516)
T ss_pred             eeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCC--CCcceeeEEEeehhhh
Confidence            999999999999998888888888887777778888999987766322   36777886543  4579999999965431


Q ss_pred             ----CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCC
Q psy12426        454 ----PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEP  494 (616)
Q Consensus       454 ----~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~  494 (616)
                          .-......--+...+.|++|.|+..|.+.|.|+...|.+..
T Consensus       298 s~k~~m~tks~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~rL  342 (516)
T KOG4802|consen  298 SAKASMITKSSYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRRL  342 (516)
T ss_pred             hhhhhcccccceeeccchhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence                10111111112335559999999999999999999988753

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.85  E-value=7.5e-09  Score=76.00  Aligned_cols=71  Identities=4%  Similarity=0.097  Sum_probs=54.6

Q ss_pred             CeEEEEEEEeeec--CCeeeeeeCCeeeee--cc-ceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426         18 TTLKFDANIIGEP--VPHVDWRAGGNPLNL--RP-IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD   92 (616)
Q Consensus        18 ~~v~l~C~~~g~P--~p~v~W~~~~~~l~~--~G-~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~   92 (616)
                      +.+.|.|.+.++|  .+.|.|+|||++|..  .| .|.-...                           ......|.|.+
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~---------------------------~~~~~~L~I~n   53 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGG---------------------------QDSAGDLMIRS   53 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEecc---------------------------CCCCCcEEEec
Confidence            5789999998755  788999999999962  23 4432210                           01246899999


Q ss_pred             cccCCeEEEEEEEEcCCCCCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ++..|.|.|.|.|.|..+....+
T Consensus        54 v~~~dsG~YtC~a~n~~~~~~a~   76 (85)
T cd05853          54 IQLKHAGKYVCMVQTSVDKLSAA   76 (85)
T ss_pred             CCHHHCEEEEEEEEcccCceEEE
Confidence            99999999999999999877655

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.84  E-value=3.8e-08  Score=74.94  Aligned_cols=82  Identities=16%  Similarity=0.205  Sum_probs=61.6

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCe--------eecccCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--------TIISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~--------~~~~~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      +.++.+.+|+++.|.|.+.+.|.+.+.|++.+.        ....+.++.+.. .....+|.|.+++.+|+|.|.|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            467889999999999999999999999986322        222345665532 24557899999999999999999998


Q ss_pred             CCCCceeeEEEE
Q psy12426        294 SWGTDKGTAKVT  305 (616)
Q Consensus       294 ~~g~~~~~~~l~  305 (616)
                      ..+ ....+.|+
T Consensus        84 ~~~-~~~~~~l~   94 (95)
T cd07701          84 MPV-KTSKAYLT   94 (95)
T ss_pred             ecC-ccEEEEEE
Confidence            433 35555554

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.84  E-value=5.8e-08  Score=73.35  Aligned_cols=88  Identities=16%  Similarity=0.251  Sum_probs=68.5

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeecc--cCcEEEEec----CCceEEEecCCCCCC-cEE
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIIS--KDRFKIVND----DKSTKLKVFDSKRGD-SGI  286 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~--~~~~~~~~~----~~~~~l~i~~l~~~~-~g~  286 (616)
                      ||.+  .......+..|+.+.|.|.+.+.|.| .+.|..++..+..  ..++.+...    +..+.|.|.++...| .|.
T Consensus         2 pP~i--~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           2 PPII--SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCEE--ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence            3544  34566788899999999999888876 6788888776643  357777653    467899999998876 789


Q ss_pred             EEEEEEcCCCCceeeEEE
Q psy12426        287 YTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       287 y~c~a~n~~g~~~~~~~l  304 (616)
                      |.|.|.|..|.......|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999988766554

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.84  E-value=2.6e-08  Score=72.48  Aligned_cols=64  Identities=23%  Similarity=0.313  Sum_probs=48.5

Q ss_pred             EEEEEEEeeecCceeEEEECCeeec--ccCcEEEEecCCceEEEecCCCC----CCcEEEEEEEEcCCCCce
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITII--SKDRFKIVNDDKSTKLKVFDSKR----GDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~l~i~~l~~----~~~g~y~c~a~n~~g~~~  299 (616)
                      +.|.|.+.|.|.|.++|++++..+.  .+.++.+..  ....|.|..+..    .|.|.|+|.|.|..|...
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~--~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRR--RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL   70 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeC--CCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence            3689999999999999999998753  334454432  234888887642    368999999999999654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.83  E-value=2.7e-08  Score=73.29  Aligned_cols=68  Identities=22%  Similarity=0.304  Sum_probs=50.8

Q ss_pred             EEEEEEEeeecCceeEEEECCeeec--------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEE
Q psy12426        234 FEFDINVIGEPIPTKEWLCNDITII--------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKV  304 (616)
Q Consensus       234 ~~l~c~~~~~p~~~~~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l  304 (616)
                      ++|.|.+.|.|.|.+.|++++....        ...++.+...   .+|.|.++...|.|.|.|.|.|..|.. .....|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            4689999999999999999643211        2234444333   489999999999999999999999876 444444

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.82  E-value=9.7e-09  Score=75.03  Aligned_cols=70  Identities=10%  Similarity=0.179  Sum_probs=50.9

Q ss_pred             EEEEEEEee-ecCCeeeeeeCCeeeeecc--ceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426         20 LKFDANIIG-EPVPHVDWRAGGNPLNLRP--IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG   96 (616)
Q Consensus        20 v~l~C~~~g-~P~p~v~W~~~~~~l~~~G--~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~   96 (616)
                      +.|+|.+.+ .|.|.++|+|+|+.+...+  ...-...+                          ......|.|.++...
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~--------------------------~~~~~~L~I~~~~~~   54 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRK--------------------------KKKSSELQISKASLA   54 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEe--------------------------CCcEEEEEECcCCcc
Confidence            579999764 7889999999999886321  11111100                          122457999999999


Q ss_pred             CeEEEEEEEEcCCCCCCCC
Q psy12426         97 NQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        97 ~~~~y~c~a~n~~g~~~~~  115 (616)
                      |+|.|.|.|.|..|....+
T Consensus        55 DsG~Y~C~a~N~~g~~~~~   73 (76)
T cd05895          55 DNGEYKCMVSSKLGNDSVT   73 (76)
T ss_pred             cCEEEEEEEEeCCCceeEE
Confidence            9999999999999976544

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.82  E-value=2e-08  Score=74.96  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             CCeEEEEEEEeee--cCceeEEEECCeeecccCc----EE-EEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426        231 GSNFEFDINVIGE--PIPTKEWLCNDITIISKDR----FK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       231 g~~~~l~c~~~~~--p~~~~~W~~~~~~~~~~~~----~~-~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                      |+.+.|.|.+.+.  |.+.+.|.+++..+.....    .. .........|.|.+++..|+|.|+|.|.|..|....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6789999999999  8889999987765432111    11 111123468999999999999999999999998887777


Q ss_pred             EEE
Q psy12426        304 VTV  306 (616)
Q Consensus       304 l~v  306 (616)
                      +.+
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            654

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.82  E-value=4.2e-08  Score=74.52  Aligned_cols=65  Identities=26%  Similarity=0.441  Sum_probs=51.5

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecc--cCcEEEEecCCceEEEecCCCC-CCcEEEEEEEEcCCCCce
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIIS--KDRFKIVNDDKSTKLKVFDSKR-GDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~l~~-~~~g~y~c~a~n~~g~~~  299 (616)
                      +..+.|.|.+.|.|.+.++|++++..+..  ..++.+. .   ..|.|.++.. .|.|.|+|.|.|..|...
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~-~---~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-G---GNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE-C---CEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            35799999999999999999999988743  2333332 2   2788988874 899999999999998653

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.81  E-value=1.3e-08  Score=76.03  Aligned_cols=77  Identities=6%  Similarity=0.045  Sum_probs=60.1

Q ss_pred             CCCCCceEecCCCeEEEEEE-EeeecCCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccccC
Q psy12426          6 RRHLGDIKLSAGTTLKFDAN-IIGEPVPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      .++.+.+.|.+|+.+.|.|. -.|.|.|.|.|+|++.++..  ..+-              +.                .
T Consensus         7 ~~~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~--------------~~----------------~   56 (96)
T cd05727           7 LEERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR--------------FV----------------S   56 (96)
T ss_pred             cCCcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe--------------EE----------------e
Confidence            35566788999999999998 77999999999999875431  1110              00                2


Q ss_pred             CCCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      ..++.|.|.+++..|.|.|.|.|.|.....
T Consensus        57 ~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          57 QTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            236799999999999999999999987655

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.81  E-value=1e-07  Score=72.28  Aligned_cols=70  Identities=16%  Similarity=0.291  Sum_probs=56.7

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeee--------cccCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+..+..|+++.|.|.+.+.|.+.+.|++++..+        ..+.++.+... ....+|.|.+++..|.|.|+|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            6788999999999999999999999999877532        12345544332 2357999999999999999999987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>KOG4258|consensus

Probab=98.81  E-value=6.8e-08  Score=96.89  Aligned_cols=132  Identities=14%  Similarity=0.191  Sum_probs=92.1

Q ss_pred             ceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC--------------CCCEEEccc---------cccceEEeccccC
Q psy12426        319 PSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME--------------TGRWVPMGD---------VSGTYTRAENLIE  375 (616)
Q Consensus       319 ~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~--------------~~~~~~~~~---------~~~~~~~i~~L~~  375 (616)
                      .+..+.+++.|+|..-...+...+.+|.+.|....              ...|.....         .....+.+.+|+|
T Consensus       496 ~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP  575 (1025)
T KOG4258|consen  496 STVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKP  575 (1025)
T ss_pred             eEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCc
Confidence            44566788999998654444556888999887532              123332211         1122577889999


Q ss_pred             CCeEEEEEEEEecCcCC-CCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeC
Q psy12426        376 GHDYNFRVKAVNKIGES-LPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK  451 (616)
Q Consensus       376 ~~~y~~~v~a~n~~g~~-~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~  451 (616)
                      .+.|-|-|.+....-.. ..-..|...-++|....|++|..+-....+++.+.|+|.+|..+++ .+++|.+.|...
T Consensus       576 ~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG-~lt~Ylv~wer~  651 (1025)
T KOG4258|consen  576 WTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNG-NLTHYLVVWERQ  651 (1025)
T ss_pred             cceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCC-ceeEEEEEEEec
Confidence            99999999987432221 2224467777888888999998777766677899999999888777 599999988543

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.79  E-value=5e-08  Score=72.48  Aligned_cols=77  Identities=19%  Similarity=0.197  Sum_probs=55.8

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecccC----cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC--CceeeEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG--TDKGTAKV  304 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g--~~~~~~~l  304 (616)
                      |+++.|.|.+.+.|.+.+.|.+.+.......    +..+........|.|.+++.+|+|.|.|.|.|..+  ....++.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            6789999999999999999998775432111    11111112246899999999999999999999765  45666666


Q ss_pred             EEe
Q psy12426        305 TVL  307 (616)
Q Consensus       305 ~v~  307 (616)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            653

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.79  E-value=4e-08  Score=71.79  Aligned_cols=69  Identities=26%  Similarity=0.396  Sum_probs=53.7

Q ss_pred             EEEEEEEee-ecCceeEEEECCeeeccc----CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        234 FEFDINVIG-EPIPTKEWLCNDITIISK----DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       234 ~~l~c~~~~-~p~~~~~W~~~~~~~~~~----~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      +.|.|.+.+ .|.+.+.|++++..+...    .++.+........|.|.+++..|+|.|+|.|.|..|....++
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            368999875 577899999999887532    233444444557899999999999999999999998776654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.79  E-value=7e-08  Score=71.17  Aligned_cols=68  Identities=15%  Similarity=0.294  Sum_probs=55.8

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      |.+..+..|+++.|.|.+.+ +.+.+.|++++..+..+ .++.+. .+   .|.|.+++..|+|.|+|.|.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~-~~---~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY-RD---GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE-CC---cEEEeCCCHHHCEEEEEEEEecc
Confidence            46788999999999999854 67899999999998765 344443 23   79999999999999999998753

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.77  E-value=4.7e-08  Score=73.23  Aligned_cols=78  Identities=23%  Similarity=0.296  Sum_probs=62.0

Q ss_pred             cCCcceEEEcCCeEEEEEEEee-ecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      ..+....+..|++++|.|.+.+ .|.+.+.|++++..+...  . .   .....|.|.+++.+|+|.|.|.|.|..|...
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~-~---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~   79 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--A-M---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDE   79 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--c-c---ccCCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence            4456778899999999999975 688899999988654321  1 1   1224899999999999999999999999887


Q ss_pred             eeEEE
Q psy12426        300 GTAKV  304 (616)
Q Consensus       300 ~~~~l  304 (616)
                      .++.|
T Consensus        80 ~~~~l   84 (85)
T cd05754          80 ATATL   84 (85)
T ss_pred             EEEEE
Confidence            76654

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.77  E-value=7.3e-09  Score=77.38  Aligned_cols=73  Identities=11%  Similarity=0.101  Sum_probs=53.4

Q ss_pred             CCeEEEEEEEeee--cCCeeeeeeCCeeeee---ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEec
Q psy12426         17 GTTLKFDANIIGE--PVPHVDWRAGGNPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVL   91 (616)
Q Consensus        17 g~~v~l~C~~~g~--P~p~v~W~~~~~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~   91 (616)
                      |+++.|.|.+.|.  |.|.|+|+++++.+..   ........                          ........|.|.
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~s~L~I~   54 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLS--------------------------EATELSSTLTIP   54 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccc--------------------------cceEEEEEEEEC
Confidence            7899999999999  8899999998875531   00000000                          001123579999


Q ss_pred             CcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         92 DLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        92 ~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      +++..|+|.|.|.|.|..|....+
T Consensus        55 ~v~~~DsG~Y~C~a~n~~~~~~~s   78 (84)
T cd05742          55 NATLKDSGTYTCAASSGTMDQKES   78 (84)
T ss_pred             CCChhhCEEEEEEEccCCCceEEE
Confidence            999999999999999999876654

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.76  E-value=2.2e-08  Score=74.13  Aligned_cols=67  Identities=9%  Similarity=0.058  Sum_probs=54.0

Q ss_pred             ceEecCCCeEEEEEEEe-eecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceE
Q psy12426         11 DIKLSAGTTLKFDANII-GEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGK   89 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~   89 (616)
                      ...|.+|+.|+|+|.+. +.|.+.+.|+|+|+.+..                                    ......|.
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~------------------------------------~~~~~~l~   51 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY------------------------------------SHSNSNLS   51 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc------------------------------------cCCCceEE
Confidence            44689999999999975 567788999999976641                                    01135789


Q ss_pred             ecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         90 VLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        90 i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      |..+...|+|.|+|.|.+..|...
T Consensus        52 I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753          52 IPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             ECccCHHHCEEEEEEEEeCCceec
Confidence            999999999999999999888543

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.73  E-value=1.5e-07  Score=70.70  Aligned_cols=80  Identities=30%  Similarity=0.351  Sum_probs=63.2

Q ss_pred             eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEE-EecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      +.+..|+.+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++...|.|.|.|.+.|..|....++.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            4566899999999999999999999999987764433332 222334579999999999999999999998887666655


Q ss_pred             E
Q psy12426        305 T  305 (616)
Q Consensus       305 ~  305 (616)
                      .
T Consensus        84 ~   84 (85)
T cd05729          84 D   84 (85)
T ss_pred             e
Confidence            4

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.73  E-value=5.5e-08  Score=73.15  Aligned_cols=76  Identities=16%  Similarity=0.271  Sum_probs=57.2

Q ss_pred             ceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEe
Q psy12426         11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKV   90 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i   90 (616)
                      -+.+.+|+.+.|.|.+.|.|.|.|.|+|++..+.....+.-.             .              .......|.|
T Consensus         3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~-------------~--------------~~~~~~~l~i   55 (85)
T cd05729           3 LHAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGY-------------K--------------VRKKKWTLIL   55 (85)
T ss_pred             eeEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEE-------------E--------------ccCcEEEEEE
Confidence            356788999999999999999999999999877532211100             0              0112346889


Q ss_pred             cCcccCCeEEEEEEEEcCCCCCC
Q psy12426         91 LDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        91 ~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      .++.+.|.|.|.|.|.|..|...
T Consensus        56 ~~~~~~d~g~Y~C~~~n~~g~~~   78 (85)
T cd05729          56 ESVVPSDSGKYTCIVENKYGSIN   78 (85)
T ss_pred             eECCcccCEEEEEEEEECCceEE
Confidence            99999999999999999888653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.72  E-value=9.2e-07  Score=79.07  Aligned_cols=157  Identities=9%  Similarity=-0.011  Sum_probs=99.7

Q ss_pred             cceEEEcCCeEEEEEEEeeec-----------CceeEEEECCeee--cc-cCcE-----EE-EecCCceEEEecCCCCCC
Q psy12426        224 SDIKVRAGSNFEFDINVIGEP-----------IPTKEWLCNDITI--IS-KDRF-----KI-VNDDKSTKLKVFDSKRGD  283 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p-----------~~~~~W~~~~~~~--~~-~~~~-----~~-~~~~~~~~l~i~~l~~~~  283 (616)
                      ..+.+.+|+.+.|.|.+.+.+           .+.+.|++++...  .. +.+.     .. ........|.|.+++..|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            457788999999999987644           4589999987542  11 1110     00 001223589999999999


Q ss_pred             cEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCC-CCceEEEEEEEEeCCC----CCEE
Q psy12426        284 SGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDG-GTDILHYVVEKMDMET----GRWV  358 (616)
Q Consensus       284 ~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~-~~~i~~y~v~~~~~~~----~~~~  358 (616)
                      +|.|+|.|.|..|....+..|.|...+      .......+..+.|.|....... +.+..  .+.|...+.    ....
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p--~I~WyKng~~l~~~~r~  181 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDY--TLTWYKNGNIVLYTDRI  181 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCc--eEEEEECCEECCCCCCE
Confidence            999999999988877777777774321      1233445778999997532110 11111  233322111    1111


Q ss_pred             EccccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        359 PMGDVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       359 ~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      .. ......+.|.++...+.+.|+|.|....
T Consensus       182 ~~-~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        182 QL-RNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EE-eCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            11 1223479999999999999999998753

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.70  E-value=7.5e-08  Score=69.97  Aligned_cols=61  Identities=16%  Similarity=0.286  Sum_probs=50.4

Q ss_pred             CcceEEEcCCeEEEEEEEeeecC-ceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPI-PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      |....+.+|+++.|.|.+.+.|. ..+.|++++..+..          ....|.|.++ .+|+|.|+|.|.|.
T Consensus         7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            45577889999999999999876 47999999987621          1238899999 99999999999874

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.69  E-value=9.7e-08  Score=72.21  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=59.8

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC----cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC-C
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-T  297 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g-~  297 (616)
                      +..+.+..|+.+.|.|.+.+ |.+.+.|++++..+....    ++...  .  ..|.|.+++..|+|.|+|.|.+..+ .
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~--~--~~L~I~~~~~~D~G~Y~C~a~~~~~~~   77 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT--E--DGLLIRSVSPADAGVYTCQSVEHGFKQ   77 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc--C--CCEEEccCCHHHCEEEEEEEecCccce
Confidence            35577889999999999987 888999999988765432    33222  1  2589999999999999999987544 3


Q ss_pred             ceeeEEEEEe
Q psy12426        298 DKGTAKVTVL  307 (616)
Q Consensus       298 ~~~~~~l~v~  307 (616)
                      ...+..+.|.
T Consensus        78 ~~~~~~l~V~   87 (89)
T cd04979          78 TLATYSLNVL   87 (89)
T ss_pred             eEeEEEEEEe
Confidence            4555555553

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.68  E-value=7.4e-08  Score=67.56  Aligned_cols=63  Identities=21%  Similarity=0.444  Sum_probs=50.8

Q ss_pred             CCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc
Q psy12426         16 AGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE   95 (616)
Q Consensus        16 ~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~   95 (616)
                      +|+.++|.|.+.+.|.+.+.|+|++..+. ...  ..                             ......|.|.++..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~~~--~~-----------------------------~~~~~~L~i~~~~~   48 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-ESN--RL-----------------------------SASGSTLTIKSVSL   48 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC-CCC--EE-----------------------------ecCCcEEEEeeCCc
Confidence            58999999999999999999999988765 111  11                             12246899999999


Q ss_pred             CCeEEEEEEEEcCCC
Q psy12426         96 GNQYEFRVLAVNKGG  110 (616)
Q Consensus        96 ~~~~~y~c~a~n~~g  110 (616)
                      .|.|.|.|.+.|..|
T Consensus        49 ~d~G~Y~C~~~n~~g   63 (63)
T smart00408       49 EDSGEYTCVAENSAG   63 (63)
T ss_pred             ccCEEEEEEEecCCC
Confidence            999999999998765

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.66  E-value=4.8e-07  Score=69.19  Aligned_cols=86  Identities=43%  Similarity=0.781  Sum_probs=67.4

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      |.+|.++.+.....+++.|.|..+.... ..+..|.|++..... .|............+.+.+|.|++.|.|+|+|.+.
T Consensus         1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~   79 (93)
T cd00063           1 PSPPTNLRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNG   79 (93)
T ss_pred             CcCCCCcEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECC
Confidence            3456677887778899999999875443 347789999987653 56655443346789999999999999999999999


Q ss_pred             CCCCCCCC
Q psy12426        489 GGPGEPSK  496 (616)
Q Consensus       489 ~G~g~~s~  496 (616)
                      .|.|.++.
T Consensus        80 ~~~~~~s~   87 (93)
T cd00063          80 GGESPPSE   87 (93)
T ss_pred             CccCCCcc
Confidence            88887765

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.65  E-value=1.7e-07  Score=70.55  Aligned_cols=76  Identities=13%  Similarity=0.156  Sum_probs=59.3

Q ss_pred             eEEEcCCeEEEEEEEeee-----cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        226 IKVRAGSNFEFDINVIGE-----PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      ..+..|....|.|...+.     |.+.+.|++++..+....+...    ....|.|.++..+|+|.|+|.|.|..+....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe----cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            567789999999987643     4679999999998875543332    2349999999999999999999998887655


Q ss_pred             eEEEE
Q psy12426        301 TAKVT  305 (616)
Q Consensus       301 ~~~l~  305 (616)
                      .+...
T Consensus        81 ~~t~t   85 (92)
T cd05757          81 NVTRT   85 (92)
T ss_pred             EEEEE
Confidence            54443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.63  E-value=7.5e-08  Score=71.47  Aligned_cols=69  Identities=19%  Similarity=0.415  Sum_probs=53.7

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      +|.|...   ...+.+|+.+.|+|.+.|+|.+.+.|++++..+..+                                  
T Consensus         1 kP~l~~~---~~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~----------------------------------   43 (80)
T PF13895_consen    1 KPVLSSS---PQSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS----------------------------------   43 (80)
T ss_dssp             --EEEEE---SSEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE----------------------------------
T ss_pred             CcEEEcc---ceEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee----------------------------------
Confidence            4677733   366899999999999999999999999999877611                                  


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                          ...+.+..+...+.|.|.|.|.+..+
T Consensus        44 ----~~~~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen   44 ----QNGLFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             ----SSEEEESSEEGGGTEEEEEEEEETTE
T ss_pred             ----eeeeeeeeeccccCEEEEEEEEeCCC
Confidence                11256677889999999999998655

...

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=98.62  E-value=2e-07  Score=70.03  Aligned_cols=81  Identities=35%  Similarity=0.560  Sum_probs=64.7

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC-EEEccc-cccceEEeccccCCCeEEEEEEEEecC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR-WVPMGD-VSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~-~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      +|.+ +.+..+..+++.|+|..+. .....+..|.|+++...... +..... .....+.+.+|.+++.|.|+|+|.|..
T Consensus         2 ~P~~-l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~   79 (85)
T PF00041_consen    2 APEN-LSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD   79 (85)
T ss_dssp             SSEE-EEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred             cCcC-eEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence            3444 7788889999999999876 55678999999999866655 444332 344589999999999999999999999


Q ss_pred             cCCCC
Q psy12426        390 GESLP  394 (616)
Q Consensus       390 g~~~~  394 (616)
                      |.|.+
T Consensus        80 g~g~~   84 (85)
T PF00041_consen   80 GEGPP   84 (85)
T ss_dssp             EEEEE
T ss_pred             cCcCC
Confidence            97654

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.59  E-value=9.3e-08  Score=71.95  Aligned_cols=71  Identities=11%  Similarity=0.018  Sum_probs=55.4

Q ss_pred             ceEecCCCeEEEEEEEee-----ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426         11 DIKLSAGTTLKFDANIIG-----EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g-----~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      .+.+.+|+.+.|+|...+     +|.|.|.|+||+.++...... -                               ...
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~-------------------------------~~~   51 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-F-------------------------------VKG   51 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-E-------------------------------ecC
Confidence            467899999999998543     367899999999988732211 0                               024


Q ss_pred             CceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      ..|.|.++...|+|.|.|.|.|..|...
T Consensus        52 ~~L~I~~v~~~DsG~YtC~~~n~~~~~~   79 (92)
T cd05757          52 SKLLIQNVTEEDAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             CEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence            6899999999999999999998877543

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.58  E-value=1.5e-07  Score=70.33  Aligned_cols=78  Identities=15%  Similarity=0.213  Sum_probs=61.4

Q ss_pred             CceeccCCcceEEEcCCeEEEEEE-EeeecCceeEEEECCee-ecccCcEEEEecCCceEEEecCCCCCCcE-EEEEEEE
Q psy12426        216 PYINRDQLSDIKVRAGSNFEFDIN-VIGEPIPTKEWLCNDIT-IISKDRFKIVNDDKSTKLKVFDSKRGDSG-IYTLAVK  292 (616)
Q Consensus       216 P~~~~~~~~~~~v~~g~~~~l~c~-~~~~p~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~l~i~~l~~~~~g-~y~c~a~  292 (616)
                      |.|.......+.+.+|+.+.|.|. ..|.|.|.+.|..++.. +..+.|+.+...|   .|.|.+++..|.| .|.|.|.
T Consensus         3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a~   79 (95)
T cd05845           3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHAH   79 (95)
T ss_pred             CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEEE
Confidence            444445567789999999999997 68999999999987654 3334555554444   9999999999999 8999999


Q ss_pred             cCCC
Q psy12426        293 NSWG  296 (616)
Q Consensus       293 n~~g  296 (616)
                      |...
T Consensus        80 ~~~~   83 (95)
T cd05845          80 FPGL   83 (95)
T ss_pred             cccc
Confidence            8653

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.57  E-value=1.4e-07  Score=70.90  Aligned_cols=87  Identities=7%  Similarity=-0.000  Sum_probs=55.5

Q ss_pred             eEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee--ccceEE-EeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426         12 IKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL--RPIWEK-CAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus        12 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~--~G~Y~C-~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      +.+.+|++|+|.|.+.+.|.+.|.|+++++....  .+...- .+.+    -..++...         . ........+|
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~----~~~r~~~~---------~-~~~~~g~~~L   67 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSK----LNDRADSR---------R-NLWDQGSFPL   67 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccc----cCCCCcee---------c-ccCCCCeEEE
Confidence            5688999999999999999999999988754321  122100 0000    00000000         0 0001224579


Q ss_pred             EecCcccCCeEEEEEEEEcCCCCC
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      +|.+|+..|+|.|.|.+.|..++-
T Consensus        68 ~I~~l~~sDsgtY~C~v~~~~~~~   91 (94)
T cd07690          68 IIKNLKIEDSDTYICEVEDKKEEV   91 (94)
T ss_pred             EECCCCHHHCEEEEEEECCccceE
Confidence            999999999999999999876643

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.57  E-value=4.1e-07  Score=69.75  Aligned_cols=74  Identities=5%  Similarity=0.073  Sum_probs=53.7

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee--------ccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL--------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~--------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      .+++.+.+|++|.|.|.+.+.|.|.+.|++.++.+..        .++|.-.                           .
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~---------------------------~   56 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV---------------------------N   56 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE---------------------------c
Confidence            5678899999999999999999999999874432210        1222111                           0


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~  109 (616)
                      ......+|.|.+++..|+|.|.|.+.+..
T Consensus        57 ~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717          57 FSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             CCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            01124579999999999999999999654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.56  E-value=1.7e-07  Score=69.61  Aligned_cols=70  Identities=14%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccC
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEG   96 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~   96 (616)
                      |+.+.|+|.+.|.|.|.++|++.++.... ....- .         ...           ..  .......|.|.+++.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~~~~-~---------~~~-----------~~--~~~~~s~L~I~~~~~~   56 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGK-GIPEV-E---------EVK-----------VP--ATTLRSTLTFPHATVE   56 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCC-CceEE-E---------EEe-----------cC--CcEEEEEEEECCCCcC
Confidence            88999999999999999999988764220 00000 0         000           00  0011357999999999


Q ss_pred             CeEEEEEEEEcCCC
Q psy12426         97 NQYEFRVLAVNKGG  110 (616)
Q Consensus        97 ~~~~y~c~a~n~~g  110 (616)
                      |+|.|.|.|.|..+
T Consensus        57 DsG~Y~C~a~n~~~   70 (84)
T cd05861          57 DSGTYECAAHESTQ   70 (84)
T ss_pred             CCEEEEEEEEECcc
Confidence            99999999998765

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.54  E-value=1.1e-06  Score=67.40  Aligned_cols=82  Identities=18%  Similarity=0.284  Sum_probs=59.1

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeee--------cccCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      +.++.+.+|+++.|.|.+.+.+.+.+.|++.+..+        ....++.+.. .+....|.|.+++..|+|.|.|.+.+
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            36678999999999999998888999998532211        1234555532 23456899999999999999999997


Q ss_pred             CCCCceeeEEEE
Q psy12426        294 SWGTDKGTAKVT  305 (616)
Q Consensus       294 ~~g~~~~~~~l~  305 (616)
                      ... ......++
T Consensus        84 ~~~-~~~~~~~~   94 (95)
T cd05717          84 MPV-QTAKATVT   94 (95)
T ss_pred             CCC-ceEEEEEE
Confidence            643 34444443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.54  E-value=2.8e-07  Score=69.37  Aligned_cols=64  Identities=9%  Similarity=-0.008  Sum_probs=47.9

Q ss_pred             ceEecCCCeEEEEEEEeeecCCeeeeeeCCe--eee----eccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426         11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGN--PLN----LRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~--~l~----~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      .+.+.+|+++.|.|.. +.|.|.|+|||.+.  ...    ..+.|.                                ..
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~--------------------------------~~   51 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI--------------------------------HT   51 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE--------------------------------Ee
Confidence            4678999999999996 58999999998542  211    112221                                12


Q ss_pred             CCceEecCcccCCeEEEEEEEEc
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ...|.|.+++++|+|.|.|.|.|
T Consensus        52 ~~~L~I~~~~~~DsG~Y~C~a~~   74 (91)
T cd05871          52 ERGLLLRSLQRSDAGVYTCTAVE   74 (91)
T ss_pred             cCeEEEeeCChhHCEEEEEEEEc
Confidence            35699999999999999999984

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.51  E-value=1.7e-07  Score=70.23  Aligned_cols=71  Identities=8%  Similarity=-0.051  Sum_probs=53.8

Q ss_pred             ceEecCCCeEEEEEE-Eee----ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426         11 DIKLSAGTTLKFDAN-IIG----EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~-~~g----~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      .+.+.+|....|+|. ..+    ++.|.|+||||+++|...+.....                             ....
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-----------------------------~~~~   54 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-----------------------------LKGS   54 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-----------------------------cCCC
Confidence            457889999999997 333    477899999999988743322111                             1124


Q ss_pred             CceEecCcccCCeEEEEEEEEcCCC
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      ..|.|.++.++|+|.|.|.|.+..|
T Consensus        55 ~~L~I~~v~~~D~G~YtC~~~~~~~   79 (95)
T cd05897          55 TYLHIIDVSLNDSGYYTCKLQFTHE   79 (95)
T ss_pred             CEEEEEEcChhhCEEEEEEEEEeeC
Confidence            5799999999999999999998765

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.51  E-value=1.1e-06  Score=66.09  Aligned_cols=79  Identities=15%  Similarity=0.247  Sum_probs=57.0

Q ss_pred             ceEEEcCCeEEEEEEEeeecCceeEEEECCe--e----ecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc-CCCC
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T----IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN-SWGT  297 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~--~----~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n-~~g~  297 (616)
                      .+.+.+|+.+.|.|.. +.|.+.+.|++.+.  .    +....++....    ..|.|.++++.|+|.|+|.|.+ ..+.
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~----~~L~I~~~~~~DsG~Y~C~a~~~~~~~   79 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTE----RGLLLRSLQRSDAGVYTCTAVEHSFSQ   79 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEec----CeEEEeeCChhHCEEEEEEEEccCCeE
Confidence            4567899999999996 57889999998432  1    11223443322    3699999999999999999984 6665


Q ss_pred             ceeeEEEEEec
Q psy12426        298 DKGTAKVTVLD  308 (616)
Q Consensus       298 ~~~~~~l~v~~  308 (616)
                      ......|+|..
T Consensus        80 ~~~~~~l~v~~   90 (91)
T cd05871          80 TLAKYTLHVIE   90 (91)
T ss_pred             EEEEEEEEEec
Confidence            66666666643

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.50  E-value=3.4e-07  Score=65.86  Aligned_cols=70  Identities=7%  Similarity=-0.007  Sum_probs=49.3

Q ss_pred             eEEEEEE-EeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCC
Q psy12426         19 TLKFDAN-IIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN   97 (616)
Q Consensus        19 ~v~l~C~-~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~   97 (616)
                      .++|+|. ..|+|++.|+||||+++|..  . .....+     ....+                  ....|.|.-....|
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~--~-~~~~~~-----~~~~t------------------~~s~L~~~~~~~Dd   54 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKG--V-ISQQEN-----GKTVS------------------VSNTIRFPVDRKDD   54 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCC--C-cccccC-----CceEE------------------EEEEEEEEeeeccC
Confidence            3789999 66899999999999999862  1 000000     00000                  12467888888899


Q ss_pred             eEEEEEEEEcCCCCCCC
Q psy12426         98 QYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        98 ~~~y~c~a~n~~g~~~~  114 (616)
                      .+.|.|.|.|..+....
T Consensus        55 g~~~~C~A~n~a~~~~~   71 (80)
T cd05885          55 GAILSCEASHPALVSQK   71 (80)
T ss_pred             CcEEEEEEEChhhCCCC
Confidence            99999999999886643

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.50  E-value=2.6e-06  Score=70.65  Aligned_cols=115  Identities=11%  Similarity=0.092  Sum_probs=70.3

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cC-ceeEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PI-PTKEW  250 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~-~~~~W  250 (616)
                      +|.|.+++..|.|.|.|.+.+..|.....     +.+.. ..+|.+... +.......|+.+.|.|.+.+. |. +.+.|
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~-----~~l~v-~~~P~v~~~-~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W   74 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQI-----IQLSV-SEPPRVRLS-LEKLVSMIEEPQTLICHIAGYYPLDVQVEW   74 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeE-----EEEEE-ecCCceEEe-CCCceeecCCcEEEEEEECCCCCCCeEEEE
Confidence            68999999999999999998865553321     22222 255666433 233444478889999999985 54 48999


Q ss_pred             EECCeeecc-----cCc----EEEEecCC---ceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        251 LCNDITIIS-----KDR----FKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       251 ~~~~~~~~~-----~~~----~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      ++++.....     ...    .....++.   .+.|.+..-...+...|+|.+.+.
T Consensus        75 ~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~  130 (139)
T cd05771          75 TREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHV  130 (139)
T ss_pred             EECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcC
Confidence            999754211     110    11111111   134555544434456899999764

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>smart00409 IG Immunoglobulin

Probab=98.49  E-value=3.2e-06  Score=63.49  Aligned_cols=83  Identities=27%  Similarity=0.475  Sum_probs=66.6

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEEC-CeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCN-DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++...|.|.|.|.+.+..+......
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            346678999999999999988889999998 7777655666666555567999999999999999999998777665555


Q ss_pred             EEEE
Q psy12426        303 KVTV  306 (616)
Q Consensus       303 ~l~v  306 (616)
                      .+.|
T Consensus        82 ~l~V   85 (86)
T smart00409       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5443

>smart00410 IG_like Immunoglobulin like

Probab=98.49  E-value=3.2e-06  Score=63.49  Aligned_cols=83  Identities=27%  Similarity=0.475  Sum_probs=66.6

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEEC-CeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCN-DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      ..+.+..|+++.|.|.+.+.+.+.+.|+++ +..+....++..........|.|.++...|.|.|.|.+.+..+......
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~   81 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT   81 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence            346678999999999999988889999998 7777655666666555567999999999999999999998777665555


Q ss_pred             EEEE
Q psy12426        303 KVTV  306 (616)
Q Consensus       303 ~l~v  306 (616)
                      .+.|
T Consensus        82 ~l~V   85 (86)
T smart00410       82 TLTV   85 (86)
T ss_pred             EEEE
Confidence            5443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.46  E-value=7.9e-07  Score=66.88  Aligned_cols=72  Identities=18%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             eEEEcCCeEEEEEEEeeecCceeEEEECCeee-cc-------------cCcEEEEe---cCCceEEEecCCCCCCcEEEE
Q psy12426        226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-IS-------------KDRFKIVN---DDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~-~~-------------~~~~~~~~---~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      +.+..|++++|.|.+.+.+.+.+.|++++... ..             ..++....   ..+..+|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            45678999999999999999999999766332 10             12222222   234568999999999999999


Q ss_pred             EEEEcCCCC
Q psy12426        289 LAVKNSWGT  297 (616)
Q Consensus       289 c~a~n~~g~  297 (616)
                      |.+.|..+.
T Consensus        82 C~v~~~~~~   90 (94)
T cd07690          82 CEVEDKKEE   90 (94)
T ss_pred             EEECCccce
Confidence            999886553

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.46  E-value=5.3e-07  Score=67.52  Aligned_cols=74  Identities=19%  Similarity=0.227  Sum_probs=56.2

Q ss_pred             CcceEEEcCCeEEEEEEE-eeecCceeEEEECCeee--cccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        223 LSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITI--ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~-~~~p~~~~~W~~~~~~~--~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      .....+.+|+.+.|.|.. .+.|.+.+.|++++..+  ..+.+..+..  ....|.|.+++..|.|.|+|.|.|.....
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~--~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ--TNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC--CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            455778899999999955 57789999999998753  2233333332  23399999999999999999999965443

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.43  E-value=1.6e-06  Score=60.61  Aligned_cols=63  Identities=24%  Similarity=0.441  Sum_probs=50.3

Q ss_pred             cCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        230 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       230 ~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      +|+.+.|.|.+.+.+.+.+.|++++..+. . ....  ......|.|.++...|.|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~-~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-E-SNRL--SASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC-C-CCEE--ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            47789999999888999999999988765 2 1111  22344899999999999999999998754

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.41  E-value=6.7e-07  Score=67.65  Aligned_cols=80  Identities=10%  Similarity=0.045  Sum_probs=56.7

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.|... | ...|.+|++|+|+|... .+...+.|+|+|......                               ....
T Consensus         3 P~L~a~-p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~-------------------------------~~~~   48 (91)
T cd05751           3 PSLWAE-P-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK-------------------------------KPPE   48 (91)
T ss_pred             CEEEec-C-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc-------------------------------ccCC
Confidence            455543 3 45789999999999875 777789999999754310                               0000


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcC-CCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNK-GGPGEPS  115 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~-~g~~~~~  115 (616)
                      ......+.|.++.+.|.|.|+|+..+. .+-+.++
T Consensus        49 ~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~S   83 (91)
T cd05751          49 PQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPS   83 (91)
T ss_pred             CceeEEEEccCCChhHCEEEEEEEECCCCccCCCC
Confidence            223567899999999999999999986 3444444

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.40  E-value=7.4e-06  Score=61.59  Aligned_cols=71  Identities=17%  Similarity=0.247  Sum_probs=57.4

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeee--------cccCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--------ISKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      .++.+.+|+++.|.|.+.+.....+.|++.+..+        ..+.|+.... .+...+|+|.+++.+|.|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            5688999999999999999877778888766442        2456777655 456778999999999999999999763

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.39  E-value=1.6e-06  Score=64.10  Aligned_cols=64  Identities=13%  Similarity=0.070  Sum_probs=51.5

Q ss_pred             eEEEcCCeEEEEEEEee-ecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        226 IKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      ..+.+|+.++|.|.+.. .+...+.|++++..+..        ......|.|.++...|+|.|+|.+.+..|.
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~--------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY--------SHSNSNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc--------cCCCceEEECccCHHHCEEEEEEEEeCCce
Confidence            35889999999999854 55678999999876531        112348999999999999999999998774

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.37  E-value=2.2e-06  Score=63.91  Aligned_cols=77  Identities=17%  Similarity=0.148  Sum_probs=55.5

Q ss_pred             CCeEEEEEEEeeecC--ceeEEEECCeeeccc---C--cEEE-EecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        231 GSNFEFDINVIGEPI--PTKEWLCNDITIISK---D--RFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       231 g~~~~l~c~~~~~p~--~~~~W~~~~~~~~~~---~--~~~~-~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      |+++.|.|.+.+.+.  ..+.|...+..+...   .  +... ......+.|.|.+++..|+|.|+|.|.|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            678999999988664  478998877543111   1  1111 1112346899999999999999999999888887777


Q ss_pred             EEEEe
Q psy12426        303 KVTVL  307 (616)
Q Consensus       303 ~l~v~  307 (616)
                      .+.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77764

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>smart00410 IG_like Immunoglobulin like

Probab=98.36  E-value=2.9e-06  Score=63.69  Aligned_cols=75  Identities=16%  Similarity=0.348  Sum_probs=58.4

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeC-CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAG-GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~-~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      |..+.+.+|+.+.|.|.+.+.+.+.+.|+++ +..+...+.+.....                            .....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~----------------------------~~~~~   52 (86)
T smart00410        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRS----------------------------GSNST   52 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEc----------------------------CCeeE
Confidence            4567889999999999999888899999998 766653444443321                            11467


Q ss_pred             eEecCcccCCeEEEEEEEEcCCCC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNKGGP  111 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~~g~  111 (616)
                      |.|.++...|.|.|.|.+.+..+.
T Consensus        53 l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00410       53 LTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             EEEEeeccccCeEEEEEEEcCCCe
Confidence            999999999999999999976654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.36  E-value=2.9e-06  Score=63.69  Aligned_cols=75  Identities=16%  Similarity=0.348  Sum_probs=58.4

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeC-CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAG-GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~-~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      |..+.+.+|+.+.|.|.+.+.+.+.+.|+++ +..+...+.+.....                            .....
T Consensus         1 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~----------------------------~~~~~   52 (86)
T smart00409        1 PPSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRS----------------------------GSNST   52 (86)
T ss_pred             CCcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEc----------------------------CCeeE
Confidence            4567889999999999999888899999998 766653444443321                            11467


Q ss_pred             eEecCcccCCeEEEEEEEEcCCCC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNKGGP  111 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~~g~  111 (616)
                      |.|.++...|.|.|.|.+.+..+.
T Consensus        53 l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00409       53 LTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             EEEEeeccccCeEEEEEEEcCCCe
Confidence            999999999999999999976654

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.34  E-value=7.3e-06  Score=61.41  Aligned_cols=84  Identities=24%  Similarity=0.344  Sum_probs=66.8

Q ss_pred             cceEEEcCCeEEEEEEEeeecCce-eEEEECCeeecccCcEEEEecC-----CceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKDRFKIVNDD-----KSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      ..+.|..|+.+.|.|.+.+.|.|. +.|.+++..+............     -.+.|.+..+...+.|.|+|.|.|..+.
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            457799999999999999999997 9999988765433221122211     2468999999999999999999999998


Q ss_pred             ceeeEEEEEe
Q psy12426        298 DKGTAKVTVL  307 (616)
Q Consensus       298 ~~~~~~l~v~  307 (616)
                      .+.++.|.+.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            8888888764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.33  E-value=1.6e-06  Score=60.77  Aligned_cols=63  Identities=13%  Similarity=0.335  Sum_probs=44.1

Q ss_pred             CCeEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc
Q psy12426         17 GTTLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE   95 (616)
Q Consensus        17 g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~   95 (616)
                      |+.|+|.|.+ .+.|.+.+.|+|+++.+.......-.. +                       +  ......|.|.++.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~-----------------------~--~~~~~~L~i~~v~~   54 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRST-N-----------------------S--VSSTSRLTISNVTP   54 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEE-T-----------------------T--TEEEEEEEESSCTG
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeec-c-----------------------c--ceeeeEEEEccCCH
Confidence            8999999999 788888999999998665211110000 0                       0  00001399999999


Q ss_pred             CCeEEEEEEE
Q psy12426         96 GNQYEFRVLA  105 (616)
Q Consensus        96 ~~~~~y~c~a  105 (616)
                      .|+|.|.|.|
T Consensus        55 ~d~G~Y~C~v   64 (64)
T PF00047_consen   55 EDSGTYTCVV   64 (64)
T ss_dssp             GGTEEEEEEE
T ss_pred             HHCEEEEEEC
Confidence            9999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.32  E-value=2.9e-06  Score=59.49  Aligned_cols=61  Identities=26%  Similarity=0.382  Sum_probs=46.4

Q ss_pred             CCeEEEEEEE-eeecCceeEEEECCeeecccCcEEEEecCCc--eEEEecCCCCCCcEEEEEEE
Q psy12426        231 GSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDKS--TKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       231 g~~~~l~c~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~--~~l~i~~l~~~~~g~y~c~a  291 (616)
                      |+.+.|.|.+ ...+...+.|.+++..+..............  ..|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6889999999 6777889999999887654443333332221  13999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.32  E-value=2.6e-06  Score=67.42  Aligned_cols=89  Identities=8%  Similarity=0.059  Sum_probs=57.1

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecC-CC--CCceeEeeeccCCccceeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTE-GD--TPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~-~~--~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      ++|+.+.+.+|++|+|.|.+.+.+.+.+.|+|....    +.-.+.+... .+  ...+++....           ....
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~----~~~~~l~~~~~~~~~~~~~r~~~~~-----------~~~~   67 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPG----QGPQFLIYISSNGEEKEKGRFSATL-----------DKSR   67 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCC----CCeEEEEEEecCCCcccCCcEEEEE-----------cccC
Confidence            468899999999999999999888889999986421    0001111110 00  0111211100           0022


Q ss_pred             CCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      ...+|.|.++++.|+|.|.|.+.+..+
T Consensus        68 ~~~~L~I~~~~~~DsG~Y~C~~~~~~~   94 (109)
T cd04983          68 KSSSLHISAAQLSDSAVYFCALSESGG   94 (109)
T ss_pred             CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            356899999999999999999986543

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.30  E-value=1.3e-06  Score=63.93  Aligned_cols=65  Identities=14%  Similarity=0.190  Sum_probs=52.0

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      .+.+.|.+|+++.|.|...++.+ .|.|+++|..+...++|.-.                                ...+
T Consensus         3 ~~~~tv~~g~~v~L~C~~~s~~A-~v~W~~ng~~l~~~~r~~~~--------------------------------~~GL   49 (85)
T cd05872           3 VKNRTVAPGADVVLPCQLRSNLA-SPVWLFNGTPLNAQFSYRVG--------------------------------TDGL   49 (85)
T ss_pred             ceEEEEecCCCEEEECCCCCCCc-cEEEEECCcccCCCcceEEe--------------------------------CCCC
Confidence            45788999999999999887644 99999999988644333211                                3347


Q ss_pred             EecCcccCCeEEEEEEEE
Q psy12426         89 KVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~  106 (616)
                      .|..++++|+|.|+|.+.
T Consensus        50 lI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872          50 LILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             EEEECCHhhCEEEEEEEe
Confidence            789999999999999998

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.27  E-value=5.1e-06  Score=61.44  Aligned_cols=70  Identities=29%  Similarity=0.409  Sum_probs=53.8

Q ss_pred             eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC-ceeeEEE
Q psy12426        226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKGTAKV  304 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~l  304 (616)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+.....          .+.+.++...+.|.|+|.+.+..+. .+.++.|
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v   78 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNV   78 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEe
Confidence            5688999999999999998999999999876652211          2667888999999999999996542 2334444


Q ss_pred             E
Q psy12426        305 T  305 (616)
Q Consensus       305 ~  305 (616)
                      +
T Consensus        79 ~   79 (80)
T PF13895_consen   79 T   79 (80)
T ss_dssp             E
T ss_pred             e
Confidence            3

...

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.24  E-value=6.6e-06  Score=65.05  Aligned_cols=86  Identities=8%  Similarity=0.061  Sum_probs=54.6

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCe--eeee-----ccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGN--PLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~--~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.|..+.+.+|++|+|.|.+.+ +.+.|.|||...  .+..     .+.-.+..    +....+..           .. 
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~----~~~~~r~~-----------~~-   65 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEE----GDPKDRFS-----------AS-   65 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEec----CccCCceE-----------EE-
Confidence            4588999999999999999988 778899999642  2221     00000000    00000111           00 


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~  109 (616)
                      .......+|.|.+++++|+|.|.|.+.+..
T Consensus        66 ~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          66 RPSLTRSSLTIKSAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             CcCCCccEEEECCCChhhCEEEEEEeeCCC
Confidence            001135689999999999999999998643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>smart00060 FN3 Fibronectin type 3 domain

Probab=98.23  E-value=1.4e-05  Score=59.16  Aligned_cols=76  Identities=38%  Similarity=0.685  Sum_probs=53.6

Q ss_pred             CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC----CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       412 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~----~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      +|.++.+.....+++.|+|.+|.....   .+|.+.|.....    .|...... .....+.+.+|.|++.|.|+|+|.+
T Consensus         3 ~p~~~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~Y~v~v~a~~   78 (83)
T smart00060        3 PPSNLRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVT-PSSTSYTLTGLKPGTEYEFRVRAVN   78 (83)
T ss_pred             CCCcEEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEec-CCccEEEEeCcCCCCEEEEEEEEEc
Confidence            445577777777799999997644321   567777765432    24433222 2257899999999999999999999


Q ss_pred             CCCC
Q psy12426        488 KGGP  491 (616)
Q Consensus       488 ~~G~  491 (616)
                      ..|.
T Consensus        79 ~~g~   82 (83)
T smart00060       79 GAGE   82 (83)
T ss_pred             ccCC
Confidence            8664

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>KOG4258|consensus

Probab=98.22  E-value=1.5e-05  Score=80.61  Aligned_cols=138  Identities=16%  Similarity=0.226  Sum_probs=89.1

Q ss_pred             CCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCC--------------C-CceEeEeecC-------CccEEEcCC
Q psy12426        415 QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY--------------G-PWEKACIVPA-------NITATSVPD  472 (616)
Q Consensus       415 ~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~--------------~-~~~~~~~~~~-------~~~~~~l~~  472 (616)
                      ++.....+.+++.|+|..-.........+|.++|++.-              + .|........       ...-+.+.+
T Consensus       493 ~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~  572 (1025)
T KOG4258|consen  493 QFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDG  572 (1025)
T ss_pred             eeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhc
Confidence            34455568899999998643333445889999997541              1 4665533222       234688999


Q ss_pred             CCCCCeEEEEEEEEcCCCCCCCC-CCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeee
Q psy12426        473 LKEGEEYEFRVIAVNKGGPGEPS-KASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLS  551 (616)
Q Consensus       473 L~p~t~Y~~~v~a~n~~G~g~~s-~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (616)
                      |+|.|.|.|-|++....-..+.- ..+...-                                               ..
T Consensus       573 LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~Y-----------------------------------------------vq  605 (1025)
T KOG4258|consen  573 LKPWTQYAVFVKTLTVTEAHEAYEAKSKIGY-----------------------------------------------VQ  605 (1025)
T ss_pred             CCccceeEEEEeeeehhhhccccccccceEE-----------------------------------------------EE
Confidence            99999999999998443222211 1111100                                               01


Q ss_pred             eeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCC
Q psy12426        552 YIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTS  600 (616)
Q Consensus       552 ~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~  600 (616)
                      |....|.+|-.+-....+++.|.|+|+||..+ ||.++.|.|.|+....
T Consensus       606 T~~~~PspPl~~ls~snsSsqi~l~W~pP~~p-NG~lt~Ylv~wer~~~  653 (1025)
T KOG4258|consen  606 TLPDIPSPPLDVLSKSNSSSQILLKWKPPSQP-NGNLTHYLVVWERQAE  653 (1025)
T ss_pred             ecCCCCCCcchhhhccCcchheeEEecCCCCC-CCceeEEEEEEEeccC
Confidence            22234555555546666777999999998876 8999999999985543

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.21  E-value=1.2e-06  Score=63.88  Aligned_cols=74  Identities=16%  Similarity=0.306  Sum_probs=48.9

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeec-CCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEP-VPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||.|... +.......+. ++|+|.+.+.| .+.++|+ +.......+.-                              
T Consensus         1 kP~I~~~-~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~~------------------------------   47 (75)
T PF13927_consen    1 KPQISVP-PPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNSR------------------------------   47 (75)
T ss_dssp             ESEEEEE-STSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEEE------------------------------
T ss_pred             CCEEEEc-CCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeeee------------------------------
Confidence            5788755 4444444444 99999999888 8899999 11111100000                              


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ........|.|.++...|.|.|.|.|.|
T Consensus        48 ~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   48 GSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            0011245789999999999999999986

...

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.20  E-value=5e-06  Score=61.62  Aligned_cols=71  Identities=15%  Similarity=0.196  Sum_probs=45.0

Q ss_pred             eEEEEEEEee-ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCC
Q psy12426         19 TLKFDANIIG-EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN   97 (616)
Q Consensus        19 ~v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~   97 (616)
                      .++|+|.+.| .|.|.|+|+|+|+.+. .+.+.=....                      .+........|.+......+
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~-~~~~~~~~~~----------------------~~~~~~~~s~L~i~~~~~~~   57 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLD-GATYSKELLK----------------------DGKRETTVSTLPITPSDHDT   57 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEcc-CceeeeeEec----------------------CCCeEEEEEEEEEeCceecC
Confidence            3789999876 7999999999999876 3333111000                      00000012356666666667


Q ss_pred             eEEEEEEEEcCCCCC
Q psy12426         98 QYEFRVLAVNKGGPG  112 (616)
Q Consensus        98 ~~~y~c~a~n~~g~~  112 (616)
                      .+.|+|.|.|.....
T Consensus        58 ~~~y~C~a~n~~l~~   72 (82)
T cd05759          58 GRTFTCRARNEALPT   72 (82)
T ss_pred             CCEEEEEEcCccCCC
Confidence            889999999865543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.17  E-value=1.6e-05  Score=59.81  Aligned_cols=80  Identities=3%  Similarity=-0.043  Sum_probs=52.8

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      -+++++.+|++|.|+|.+.+.....+.|++-+..+-..+.      + .-+...++.           ... ......+|
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~------~-~~~~d~Rf~-----------~~~-~~~~~~tL   64 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRD------V-RPLKDSRFQ-----------LVN-FSSNELRV   64 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecC------c-cccCCcCEE-----------EEe-CCCCEEEE
Confidence            3578999999999999999988888999977743321000      0 000000111           000 02335579


Q ss_pred             EecCcccCCeEEEEEEEEc
Q psy12426         89 KVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n  107 (616)
                      +|.+++..|+|.|.|.+..
T Consensus        65 ~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881          65 SLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             EECcCCcccCEEEEEEEEc
Confidence            9999999999999999983

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.16  E-value=1.2e-05  Score=60.27  Aligned_cols=81  Identities=15%  Similarity=0.158  Sum_probs=59.0

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCe-eeeeeCCeeeeecc-ceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPH-VDWRAGGNPLNLRP-IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~l~~~G-~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      -..+.|.+|+.+.|.|.+.+.|+|+ +.|.+++..+.... .|. .-.+.                       ....-..
T Consensus        10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~-~~~~~-----------------------~~~rY~S   65 (101)
T cd05860          10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYV-KSRNE-----------------------SNNRYVS   65 (101)
T ss_pred             CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCcccccee-EEecc-----------------------CceEEEE
Confidence            4567899999999999999999998 99999988764311 121 11110                       0011135


Q ss_pred             ceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      .|.+..|...+.|.|.|.|.|+.+...
T Consensus        66 ~L~L~Rlk~~E~G~YTf~a~N~~~~~s   92 (101)
T cd05860          66 ELHLTRLKGTEGGTYTFLVSNSDASAS   92 (101)
T ss_pred             EEEEeecChhhCcEEEEEEECCCCeEE
Confidence            788999999999999999998776543

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.15  E-value=1.6e-05  Score=59.84  Aligned_cols=80  Identities=16%  Similarity=0.120  Sum_probs=55.7

Q ss_pred             cceEEEcCCeEEEEEEEee-----------ecCceeEEEECCeeecccCc-----EEEEecCCceEEEecCCCCCCcEEE
Q psy12426        224 SDIKVRAGSNFEFDINVIG-----------EPIPTKEWLCNDITIISKDR-----FKIVNDDKSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~-----------~p~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~l~~~~~g~y  287 (616)
                      ..+.+.+|+.+.|.|..+-           .....+.|+|++..+.....     .++...  ...|.|..+..+|+|.|
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~--~~~Lwf~Pa~~eDSG~Y   85 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE--EDSIWFRPAELQDSGLY   85 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe--CCEEEEEeCChhhCeEE
Confidence            3467889999999999732           22347999999755433221     122222  23899999999999999


Q ss_pred             EEEEEcCCCCceeeEEEE
Q psy12426        288 TLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       288 ~c~a~n~~g~~~~~~~l~  305 (616)
                      +|.+.|.......+..|+
T Consensus        86 ~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          86 TCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EEEECCCCcceEEEEEEE
Confidence            999999766555555444

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.13  E-value=1.4e-05  Score=60.05  Aligned_cols=71  Identities=15%  Similarity=0.204  Sum_probs=52.1

Q ss_pred             eEEEcCCeEEEEEEE---e--eecCceeEEEECCeeecccC-cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        226 IKVRAGSNFEFDINV---I--GEPIPTKEWLCNDITIISKD-RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~---~--~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      ..+..|.+..|.|.-   .  ..+.+.+.|+|++..+.... ++....  +...|.|.++..+|+|.|+|.+.+..|..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~--~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK--GSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC--CCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            345677888999973   2  33567999999998876443 222211  23479999999999999999999987654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.12  E-value=1.6e-05  Score=58.20  Aligned_cols=74  Identities=16%  Similarity=0.284  Sum_probs=58.1

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                      ..+.+..|+.+.|.|...+. .+.+.|++++..+..+.++.....    -|.|.++++.|+|.|.|.+. ..|.....+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~----GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~   77 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTD----GLLILVTSPEHSGTYRCYSE-EEGFQQLVAS   77 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCC----CCEEEECCHhhCEEEEEEEe-cCCCeEEEEE
Confidence            45788999999999998775 669999999998876666665544    47799999999999999987 3354443333

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.09  E-value=9.7e-06  Score=60.42  Aligned_cols=74  Identities=9%  Similarity=0.038  Sum_probs=50.4

Q ss_pred             CCeEEEEEEEeeecCC--eeeeeeCCeeeee---ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEec
Q psy12426         17 GTTLKFDANIIGEPVP--HVDWRAGGNPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVL   91 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p--~v~W~~~~~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~   91 (616)
                      |+++.|.|.+.|+|.+  .++|.+.++.+..   ...+.=                         ...........|.|.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~-------------------------~~~~~~~~~s~L~I~   55 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRR-------------------------SLQEHTELSSTLTIE   55 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccc-------------------------cccccceeeeEEEEe
Confidence            7899999999987754  6799988764421   000000                         000001124589999


Q ss_pred             CcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         92 DLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        92 ~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      +++..|.|.|.|.|.|..|....+
T Consensus        56 ~~~~~DsG~Y~C~a~n~~~~~~~~   79 (86)
T cd05862          56 NVTLSDLGRYTCTASSGQMIAKNS   79 (86)
T ss_pred             cCCcccCEEEEEEEeecceEeccc
Confidence            999999999999999988866554

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>KOG0613|consensus

Probab=98.07  E-value=0.00011  Score=78.61  Aligned_cols=260  Identities=17%  Similarity=0.216  Sum_probs=132.7

Q ss_pred             cceEEEcCCeEEEEEEEeeecCce-eEEEECCeeecccC--cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~-~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      ..+....+..+.+.|..++...+. +.|++++.....+.  ..........+.+.|..+.+.+.+.+.|.|.|..|....
T Consensus       342 ~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~  421 (1205)
T KOG0613|consen  342 LSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT  421 (1205)
T ss_pred             ceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccc
Confidence            445666777899999999998885 99999877654433  233334455678899999999999999999999998766


Q ss_pred             eEEEEEecCC-CCC-CC---Cccceeec--CCeEEEEEeCCCCCCCCceEEEEEEEEe--CCCCCEEEccc--cccceEE
Q psy12426        301 TAKVTVLDIP-SPP-EG---PLKPSNIT--KSSCNLEWRAPRDDGGTDILHYVVEKMD--METGRWVPMGD--VSGTYTR  369 (616)
Q Consensus       301 ~~~l~v~~~p-~~p-~~---~~~~~~~~--~~~~~l~W~~~~~~~~~~i~~y~v~~~~--~~~~~~~~~~~--~~~~~~~  369 (616)
                      ....++...+ ..+ ..   ...+....  .+.+.+.+..+....  + ....-.+..  ...........  .....+.
T Consensus       422 ~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~--~-~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk  498 (1205)
T KOG0613|consen  422 IAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSM--P-MTTVTTIKDGLPLSDRSVTLTRDVLTSLLLK  498 (1205)
T ss_pred             cchhhcccccCCCCCccccccccccccccCCcccccccCCCCccc--c-ceeEeeccCCcccccccccccccchhhheee
Confidence            5555543322 111 11   01111111  134444443322110  0 100001100  00011111111  1223344


Q ss_pred             eccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEe
Q psy12426        370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK  449 (616)
Q Consensus       370 i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~  449 (616)
                      +.++..+..|.+...-.+..+.  ..   ..  .........++..+....--.....|.|.+-..+.+-.-.+|.+...
T Consensus       499 ~~~~~~~A~~~~a~~~~~~k~~--~~---~~--~~l~~~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~  571 (1205)
T KOG0613|consen  499 VASLSDGAQYTRALRTLQGKPV--PS---LD--RKLPAAKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR  571 (1205)
T ss_pred             ccCCCccchhhhhhhccCCCCC--Cc---cc--ccccccccCCcccccccccCCCCcccccCCCcccccccchhhhhhhh
Confidence            4555556555443332222221  11   00  00111222233222222223445566666422222211222333322


Q ss_pred             eCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCC
Q psy12426        450 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSK  496 (616)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~  496 (616)
                       ..+.|......++  +..++-++.|+..|.+.+-+.+..|.+.++.
T Consensus       572 -qlg~~~~~~~r~g--tt~t~~~~~p~~~~~~t~~~k~~~gE~~ps~  615 (1205)
T KOG0613|consen  572 -QLGVWRVPESRPG--TTETIGSILPGHEYHVTIKAKNELGESRPSS  615 (1205)
T ss_pred             -hccCCcccccCCC--cccccccccccccceeehhhhhcccccCCCC
Confidence             1123443333333  7788888999999999999999999998875

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=98.03  E-value=0.0039  Score=57.26  Aligned_cols=217  Identities=14%  Similarity=0.147  Sum_probs=113.8

Q ss_pred             cCCceEEEecCCCCCCcEEEEEEEEcCC-CCceeeEEEEEec---CCCCCCC----CccceeecCC--eEEEEEeCCCCC
Q psy12426        268 DDKSTKLKVFDSKRGDSGIYTLAVKNSW-GTDKGTAKVTVLD---IPSPPEG----PLKPSNITKS--SCNLEWRAPRDD  337 (616)
Q Consensus       268 ~~~~~~l~i~~l~~~~~g~y~c~a~n~~-g~~~~~~~l~v~~---~p~~p~~----~~~~~~~~~~--~~~l~W~~~~~~  337 (616)
                      .+....++|.+|.++..|.+.+++.|.. +.+.+........   ....+..    .+....+.+.  .-.++...|...
T Consensus        11 vg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~   90 (300)
T PF10179_consen   11 VGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRS   90 (300)
T ss_pred             cCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCC
Confidence            3445688999999999999999999863 3333322222222   1111111    0111122221  233445544211


Q ss_pred             CCCceEEEEEEEE---------eCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEE-ccC--
Q psy12426        338 GGTDILHYVVEKM---------DMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT-AKD--  405 (616)
Q Consensus       338 ~~~~i~~y~v~~~---------~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~-~~~--  405 (616)
                      ....-..+.+.-+         ..+...........-..+.+.++.+|..|.+++.+.|......    ...+. +.+  
T Consensus        91 ~~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e~~~----~~kV~aast~~  166 (300)
T PF10179_consen   91 STHQSLWLFVQSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDEGPS----TFKVQAASTNP  166 (300)
T ss_pred             CCCccEEEEEEeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCCCce----EEEEEEecCCc
Confidence            1111122222221         1111111111223345789999999999999998766433211    12222 222  


Q ss_pred             -CCCCCCCCCCCEEEE----ecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-----------------------CceE
Q psy12426        406 -PFGRPDRPGQPTVTD----WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-----------------------PWEK  457 (616)
Q Consensus       406 -~~~~p~~p~~~~~~~----~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-----------------------~~~~  457 (616)
                       ...-|.-|.+..+..    .+.++++|.|.+. .+..   ..|=|+.++..+                       ++..
T Consensus       167 ~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s-~d~~---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~  242 (300)
T PF10179_consen  167 SKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGS-PDRS---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVL  242 (300)
T ss_pred             ccCCCCCCCCCCceeEEcCCcccceEEEEEecC-CCCC---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEE
Confidence             224567777777644    3569999999953 2222   346666543321                       1222


Q ss_pred             eE--ee-------cCCccEEEcCCCCCCCeEEEEEEEEcCCCCC
Q psy12426        458 AC--IV-------PANITATSVPDLKEGEEYEFRVIAVNKGGPG  492 (616)
Q Consensus       458 ~~--~~-------~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g  492 (616)
                      +.  ..       .......+|.+|+||+.|.|.|.+.-..|.+
T Consensus       243 Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~s  286 (300)
T PF10179_consen  243 CKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQS  286 (300)
T ss_pred             EEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCCce
Confidence            21  11       1112355899999999999999997665554

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.01  E-value=2.3e-05  Score=61.40  Aligned_cols=84  Identities=6%  Similarity=0.042  Sum_probs=52.3

Q ss_pred             CCCCceEecCCCeEEEEEEEeeec-CCeeeeeeCC--eeeeeccceEEEeecCCCC-CceeEeeeccCCccceeeccccC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEP-VPHVDWRAGG--NPLNLRPIWEKCAQTEGDT-PKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~-~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      +.|..+.+.+|++|+|.|.+.+.. ...+.|||..  +....    .+.-.+.... ...+..           .  ...
T Consensus         5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~----l~~~~~~~~~~~~~r~~-----------~--~~~   67 (106)
T cd04980           5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKL----LIYGASTLASGTPSRFS-----------G--SGS   67 (106)
T ss_pred             ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEE----EEECccccCCCCCCCEE-----------E--ecc
Confidence            458889999999999999988766 5679999853  22110    0000000000 000111           0  001


Q ss_pred             CCCCceEecCcccCCeEEEEEEEEc
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      .....|+|.++++.|+|.|.|.+.+
T Consensus        68 ~~~~~L~I~~~~~~Dsg~Y~Ca~~~   92 (106)
T cd04980          68 GTDFTLTISRVEPEDAAVYYCQQYG   92 (106)
T ss_pred             CCEEEEEECCCChHHCEEEEEEEeC
Confidence            2345799999999999999999875

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.96  E-value=6.1e-05  Score=59.49  Aligned_cols=73  Identities=25%  Similarity=0.296  Sum_probs=55.8

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCee------e--------cccCcEEEEec--CCceEEEecCCCCCCcEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT------I--------ISKDRFKIVND--DKSTKLKVFDSKRGDSGI  286 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~------~--------~~~~~~~~~~~--~~~~~l~i~~l~~~~~g~  286 (616)
                      +..+.+.+|+++.|.|.+.+.+...+.|++....      +        ....++.+...  .....|.|.+++.+|+|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~   84 (109)
T cd04983           5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAV   84 (109)
T ss_pred             CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEE
Confidence            4567899999999999999888889999984321      0        11245544432  356799999999999999


Q ss_pred             EEEEEEcCC
Q psy12426        287 YTLAVKNSW  295 (616)
Q Consensus       287 y~c~a~n~~  295 (616)
                      |.|.+.+..
T Consensus        85 Y~C~~~~~~   93 (109)
T cd04983          85 YFCALSESG   93 (109)
T ss_pred             EEEEEecCC
Confidence            999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.94  E-value=0.0001  Score=54.60  Aligned_cols=65  Identities=15%  Similarity=0.260  Sum_probs=45.2

Q ss_pred             EEEEEEEee-ecCceeEEEECCeeecccCcEE-EEecCC----ceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        234 FEFDINVIG-EPIPTKEWLCNDITIISKDRFK-IVNDDK----STKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       234 ~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      +.|.|.+.| .|.+.+.|++++..+....... ....+.    .+.|.|......+.+.|+|.|.|..-..
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            579999987 6888999999998875432111 111221    2467777777778889999999865443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.92  E-value=3.8e-05  Score=61.41  Aligned_cols=86  Identities=10%  Similarity=0.101  Sum_probs=53.1

Q ss_pred             CCCCceEecCCCeEEEEEEEee--ecCCeeeeeeCC--eeeee------ccceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIG--EPVPHVDWRAGG--NPLNL------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g--~P~p~v~W~~~~--~~l~~------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      +.|..+.+.+|++|+|.|.+.+  .+.+.+.|||..  ..+..      .+.-.+.  +  +...+++..          
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~--~--~~~~~r~~~----------   68 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKL--S--GGTKNKFEA----------   68 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEe--C--cccCCCEEE----------
Confidence            4588899999999999999887  778899999963  21110      0000000  0  000011110          


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                       ..........|+|.+++++|+|.|.|.+..
T Consensus        69 -~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          69 -RKDVGKSTSTLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             -EEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence             000011345799999999999999999874

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.91  E-value=9.4e-05  Score=58.65  Aligned_cols=89  Identities=10%  Similarity=0.140  Sum_probs=53.1

Q ss_pred             CCCceEecCCCeEEEEEEEeeec----CCeeeeeeC---CeeeeeccceEEEeecCC-----CCCceeEeeeccCCccce
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEP----VPHVDWRAG---GNPLNLRPIWEKCAQTEG-----DTPKGKVLDLIEGNHPIW   75 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P----~p~v~W~~~---~~~l~~~G~Y~C~a~n~~-----~~~~~~v~~~~~~~~p~w   75 (616)
                      -+..+.+.+|+.|.|.|.....+    ...|+|++.   +.. .. -.|  ...+..     +.-.+++...        
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~-~~-~v~--~~~~~~~~~~~~~f~~R~~~~--------   71 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGR-EE-SVF--YYHKRPYPPPDGRFKGRVVWD--------   71 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCc-ee-EEE--EECCCccccCcccccCeEEEe--------
Confidence            37788999999999999965433    246999852   111 10 000  000100     0011122110        


Q ss_pred             eeccccCCCCCceEecCcccCCeEEEEEEEEcCCCC
Q psy12426         76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP  111 (616)
Q Consensus        76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~  111 (616)
                         +.......+|.|.+++..|+|.|.|.+.|..+.
T Consensus        72 ---~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          72 ---GNIMRRDASILIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             ---cCCcCCceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence               011234568999999999999999999987664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.90  E-value=9.4e-05  Score=58.31  Aligned_cols=92  Identities=9%  Similarity=-0.008  Sum_probs=54.2

Q ss_pred             CCceEecCCCeEEEEEEEeee----cCCeeeeeeCCeeeeeccceEEEeecC------CCCCceeEeeeccCCccceeec
Q psy12426          9 LGDIKLSAGTTLKFDANIIGE----PVPHVDWRAGGNPLNLRPIWEKCAQTE------GDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~----P~p~v~W~~~~~~l~~~G~Y~C~a~n~------~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      +..+.+..|+.++|.|.....    +...|+|.+....-. .-.-.+.=.+.      .+.-++++.         |...
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~-~~~~v~~y~~g~~~~~~~~~f~~Rv~---------f~g~   74 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSR-DAISIFHYGKGQPYIDDVGPFKERIE---------WVGN   74 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCC-ccEEEEEeCCCceecccccCccCceE---------EeCC
Confidence            567889999999999996553    345799954321000 00000000000      011112222         1111


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                        ....+.++.|.+|+..|.|.|.|...|..+..
T Consensus        75 --~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~  106 (116)
T cd05879          75 --PSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIV  106 (116)
T ss_pred             --CCcCeeEEEEccCCcccCEEEEEEEEcCCCcC
Confidence              13456799999999999999999999877643

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>KOG0613|consensus

Probab=97.88  E-value=0.00023  Score=76.33  Aligned_cols=323  Identities=17%  Similarity=0.149  Sum_probs=165.5

Q ss_pred             ccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC
Q psy12426        166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI  245 (616)
Q Consensus       166 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~  245 (616)
                      ........+.|.++.+++.|.+.|.|.|..|..................++.+...-........-+.+.+.|...+.+.
T Consensus       387 ~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~  466 (1205)
T KOG0613|consen  387 VGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSM  466 (1205)
T ss_pred             cccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccc
Confidence            33455667889999999999999999999998665544443333333334443222111112222366778888888875


Q ss_pred             c--eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe-cCCCCCCCCccceee
Q psy12426        246 P--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-DIPSPPEGPLKPSNI  322 (616)
Q Consensus       246 ~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~-~~p~~p~~~~~~~~~  322 (616)
                      +  .++|++++....  ........+...+|.+.-..+.+.+.|........+....+...... .....+.. +....-
T Consensus       467 ~~~~~tt~~~~~~~s--~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~~~s~a~~~-~~~~~~  543 (1205)
T KOG0613|consen  467 PMTTVTTIKDGLPLS--DRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLPAAKSSAPKP-IHTQEN  543 (1205)
T ss_pred             cceeEeeccCCcccc--cccccccccchhhheeeccCCCccchhhhhhhccCCCCCCcccccccccccCCccc-cccccc
Confidence            5  444555443322  22222222333455566666667777755555444433222111111 11111111 111222


Q ss_pred             cCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEE
Q psy12426        323 TKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT  402 (616)
Q Consensus       323 ~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~  402 (616)
                      -.....|.|.+...+.+..-..|.+.-.  ....|............+.+..++..|.+++.+.+..|.+.++..+....
T Consensus       544 ~~g~p~l~~~~~~~E~~~vs~~~~~a~~--qlg~~~~~~~r~gtt~t~~~~~p~~~~~~t~~~k~~~gE~~ps~~~~t~k  621 (1205)
T KOG0613|consen  544 QPGTPTLEWEPKPAEASKVSLHYASATR--QLGVWRVPESRPGTTETIGSILPGHEYHVTIKAKNELGESRPSSKSTTLK  621 (1205)
T ss_pred             CCCCcccccCCCcccccccchhhhhhhh--hccCCcccccCCCcccccccccccccceeehhhhhcccccCCCCCCcccc
Confidence            2344556665432222211112222111  11223333232337788889999999999999999999887653222222


Q ss_pred             ccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEE
Q psy12426        403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYE  480 (616)
Q Consensus       403 ~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~  480 (616)
                      ...+...+..|..-.......++..+.|.........+...|....-....  .|.-.... .......+....+.+.|.
T Consensus       622 ~~D~~q~~~~~~~~~~~ks~~~~~k~s~l~~l~k~~~~a~~~~~~~~~vd~~~K~kv~~~~-~e~d~~i~~~~~t~si~~  700 (1205)
T KOG0613|consen  622 WQDPSQLKRRPVSEPSYKSPDSSQKPSKLVGLSKMDLPANLESQVKPTVVSSPKKKVKKKK-QEKDLEILAKKGTTSIVE  700 (1205)
T ss_pred             ccccccccccccCCccccccccccchhcccchhhccccccceeeeeccccCCccccccccc-cccchhhhccCCCCcccc
Confidence            111111112222222223356778888887666555566666665544433  22221111 112344556677777788


Q ss_pred             EEEEEEcCCCCCCC
Q psy12426        481 FRVIAVNKGGPGEP  494 (616)
Q Consensus       481 ~~v~a~n~~G~g~~  494 (616)
                      +...+.+..+....
T Consensus       701 p~k~~e~~~~~~~~  714 (1205)
T KOG0613|consen  701 PEKPPESEAATPAE  714 (1205)
T ss_pred             cccCCccccCCccc
Confidence            88888777766544

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.88  E-value=5.3e-05  Score=57.25  Aligned_cols=65  Identities=15%  Similarity=0.068  Sum_probs=50.0

Q ss_pred             eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      ..|..|++++|.|... .+...+.|+++|......   .....+....|.|.++.+.|+|.|+|...+.
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVK---KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccc---ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            4678999999999875 566789999998753321   1122344568999999999999999999885

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.87  E-value=9.9e-05  Score=58.29  Aligned_cols=71  Identities=17%  Similarity=0.229  Sum_probs=53.1

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCe--e---ec-------------ccCcEEEEecC-CceEEEecCCCCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T---II-------------SKDRFKIVNDD-KSTKLKVFDSKRGD  283 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~--~---~~-------------~~~~~~~~~~~-~~~~l~i~~l~~~~  283 (616)
                      +..+.+.+|++++|.|.+.+ +...+.|+|...  .   +.             ...++...... ....|.|.+++++|
T Consensus         5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~D   83 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPED   83 (110)
T ss_pred             CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhh
Confidence            45678999999999999988 677899998532  1   10             02344443332 46789999999999


Q ss_pred             cEEEEEEEEcC
Q psy12426        284 SGIYTLAVKNS  294 (616)
Q Consensus       284 ~g~y~c~a~n~  294 (616)
                      +|.|.|.+.+.
T Consensus        84 sg~Y~Ca~~~~   94 (110)
T cd05899          84 SAVYLCASSLG   94 (110)
T ss_pred             CEEEEEEeeCC
Confidence            99999999874

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.87  E-value=0.00015  Score=56.69  Aligned_cols=78  Identities=21%  Similarity=0.301  Sum_probs=54.8

Q ss_pred             cCCeEEEEEEEeeec------------CceeEEEECCe--e--ec----------cc--CcEEEEe---cCCceEEEecC
Q psy12426        230 AGSNFEFDINVIGEP------------IPTKEWLCNDI--T--II----------SK--DRFKIVN---DDKSTKLKVFD  278 (616)
Q Consensus       230 ~g~~~~l~c~~~~~p------------~~~~~W~~~~~--~--~~----------~~--~~~~~~~---~~~~~~l~i~~  278 (616)
                      .|++++|.|......            .+++.|++...  .  +.          ..  .|+.+..   .....+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            378899999987543            46899998421  1  10          01  2444433   33567999999


Q ss_pred             CCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        279 SKRGDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       279 l~~~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      ++..|+|.|+|.+.+..........|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999999876777766666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>KOG4802|consensus

Probab=97.86  E-value=0.0001  Score=68.19  Aligned_cols=93  Identities=25%  Similarity=0.381  Sum_probs=65.2

Q ss_pred             CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEe
Q psy12426        454 PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLF  533 (616)
Q Consensus       454 ~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~  533 (616)
                      .|..... ......+.+.++.||..|+|||.|+|..|.--++.++........+                          
T Consensus       198 hwQtv~~-t~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~p--------------------------  250 (516)
T KOG4802|consen  198 HWQTVEK-TMEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNP--------------------------  250 (516)
T ss_pred             cceeeee-cCCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCC--------------------------
Confidence            5666533 2345588899999999999999999999876667666654443322                          


Q ss_pred             eCeeeeccccccceeeeeeeecCCCCCCCCeEEeecCC---cEEEEeeCCCCCCCCceeeeEEEEe
Q psy12426        534 KNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKD---HIKIKWQQPISNGGSAIKGYEVERR  596 (616)
Q Consensus       534 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~---~i~l~W~~p~~~~~~~i~~Y~i~~~  596 (616)
                                           .+|.+|.++++.++..+   +..|-|.|+.++  -+|..|.|.|.
T Consensus       251 ---------------------kaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sd--lPv~~Yki~Ws  293 (516)
T KOG4802|consen  251 ---------------------KAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSD--LPVEKYKITWS  293 (516)
T ss_pred             ---------------------CCCcCcccceeeeeeecceEEEEEEeCCCCCC--CcceeeEEEee
Confidence                                 33556777775544333   257788886654  89999999996

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.84  E-value=4.6e-05  Score=58.44  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=26.6

Q ss_pred             cCCCeEEEEEEEeee-cC-CeeeeeeCCeeeee
Q psy12426         15 SAGTTLKFDANIIGE-PV-PHVDWRAGGNPLNL   45 (616)
Q Consensus        15 ~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~l~~   45 (616)
                      ..|+.++|.|.+.|. |. +.|+|+|||..+..
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~   43 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTS   43 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCC
Confidence            579999999999997 64 67999999998863

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.80  E-value=4e-05  Score=55.67  Aligned_cols=58  Identities=19%  Similarity=0.367  Sum_probs=41.0

Q ss_pred             eEEEEEEEeeec-CceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        233 NFEFDINVIGEP-IPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       233 ~~~l~c~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+.|.|.+.+.+ .+.++|+ +.....  .............|.|.++...|.|.|+|.|.|
T Consensus        17 ~~~l~C~~~~~~~~~~~~W~-~~~~~~--~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   17 SVTLTCSAEGGPPPPSISWY-DSNPSF--NSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEESSEESSEEEEEE-TEEEEE--EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eEEEEEEEccccCCeEEEEE-ecCCce--eeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            399999999998 8899999 111111  111111122334899999999999999999986

...

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=97.79  E-value=0.00012  Score=57.42  Aligned_cols=72  Identities=13%  Similarity=0.188  Sum_probs=52.8

Q ss_pred             CcceEEEcCCeEEEEEEEeeec-CceeEEEECCe--e---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDI--T---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p-~~~~~W~~~~~--~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y  287 (616)
                      +..+.+.+|++++|.|.+.+.. ...+.|++...  .   +.         ...++..........|.|.++++.|+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y   86 (106)
T cd04980           7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY   86 (106)
T ss_pred             CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE
Confidence            4567889999999999997665 56799987431  1   11         11345554445567899999999999999


Q ss_pred             EEEEEcC
Q psy12426        288 TLAVKNS  294 (616)
Q Consensus       288 ~c~a~n~  294 (616)
                      .|.+.+.
T Consensus        87 ~Ca~~~~   93 (106)
T cd04980          87 YCQQYGT   93 (106)
T ss_pred             EEEEeCC
Confidence            9999753

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.79  E-value=8.5e-05  Score=54.79  Aligned_cols=25  Identities=20%  Similarity=0.575  Sum_probs=22.1

Q ss_pred             EEEEEEEee-ecCCeeeeeeCCeeee
Q psy12426         20 LKFDANIIG-EPVPHVDWRAGGNPLN   44 (616)
Q Consensus        20 v~l~C~~~g-~P~p~v~W~~~~~~l~   44 (616)
                      ++|+|.+.| +|.+.|+|+|+|++|.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~   27 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELK   27 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEcc
Confidence            789999765 6999999999999886

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.79  E-value=0.0001  Score=54.27  Aligned_cols=25  Identities=12%  Similarity=0.523  Sum_probs=22.2

Q ss_pred             EEEEEEEee-ecCCeeeeeeCCeeee
Q psy12426         20 LKFDANIIG-EPVPHVDWRAGGNPLN   44 (616)
Q Consensus        20 v~l~C~~~g-~P~p~v~W~~~~~~l~   44 (616)
                      ++|+|.+.| +|...|+|+|||+.+.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~   27 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIK   27 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECc
Confidence            789999776 8888999999999876

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.78  E-value=0.00011  Score=57.52  Aligned_cols=70  Identities=24%  Similarity=0.253  Sum_probs=52.0

Q ss_pred             EEEcCCeEEEEEEEeee-cCceeEEEECCee-----e------------cccCcEEEEecC--CceEEEecCCCCCCcEE
Q psy12426        227 KVRAGSNFEFDINVIGE-PIPTKEWLCNDIT-----I------------ISKDRFKIVNDD--KSTKLKVFDSKRGDSGI  286 (616)
Q Consensus       227 ~v~~g~~~~l~c~~~~~-p~~~~~W~~~~~~-----~------------~~~~~~~~~~~~--~~~~l~i~~l~~~~~g~  286 (616)
                      .+..|++++|.|.+... +...+.|++....     +            ....++.+....  ...+|+|.+++.+|.|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999986 6778999984321     1            012344444333  56799999999999999


Q ss_pred             EEEEEEcCCC
Q psy12426        287 YTLAVKNSWG  296 (616)
Q Consensus       287 y~c~a~n~~g  296 (616)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.78  E-value=8.3e-05  Score=58.31  Aligned_cols=85  Identities=12%  Similarity=0.120  Sum_probs=51.2

Q ss_pred             EecCCCeEEEEEEEeee-cCCeeeeeeCCeeeeeccceEEEeecCC----CCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426         13 KLSAGTTLKFDANIIGE-PVPHVDWRAGGNPLNLRPIWEKCAQTEG----DTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus        13 ~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~l~~~G~Y~C~a~n~~----~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      .|.+|++|+|.|.+.+. +...+.|+|....-..  ...+...+..    ....+++...         ..  ......+
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~--~~i~~~~~~~~~~~~~~~~r~~~~---------~~--~~~~~~s   68 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGP--ELLIYISSNGSQYAGGVKGRFSGT---------RD--SSKSSFT   68 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCC--EEEEEEeCCCCccCccCCCcEEEE---------Ee--ccCCEEE
Confidence            57899999999998876 6778999996531000  0111111100    0011111110         00  0113568


Q ss_pred             eEecCcccCCeEEEEEEEEcCCC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      |+|.+++..|.|.|.|.+.+..+
T Consensus        69 L~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          69 LTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             EEECCCCHHHCEEEEEEEecCCC
Confidence            99999999999999999996554

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.77  E-value=0.0002  Score=57.09  Aligned_cols=93  Identities=9%  Similarity=0.021  Sum_probs=53.3

Q ss_pred             CCCceEecCCCeEEEEEEEeeec----CCeeeeeeCCee-eeeccceEEEeecCC----CCCceeEeeeccCCccceeec
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEP----VPHVDWRAGGNP-LNLRPIWEKCAQTEG----DTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P----~p~v~W~~~~~~-l~~~G~Y~C~a~n~~----~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      .|..+.+.+|+.|+|.|......    ...|.|++.... -...-.|........    +.-++++.-.           
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~-----------   72 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWV-----------   72 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEe-----------
Confidence            47888999999999999875432    256999874320 000000111000000    0001111110           


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP  111 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~  111 (616)
                      +.......+|+|.+++..|+|.|.|.+.|..+.
T Consensus        73 ~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          73 GNPSRKDASIVIHNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             cCCcCCeeEEEEeeCCcccCEEEEEEEEeCCCC
Confidence            111233468999999999999999999976554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=97.77  E-value=7.9e-05  Score=56.14  Aligned_cols=76  Identities=5%  Similarity=-0.086  Sum_probs=50.9

Q ss_pred             CceEecCCCeEEEEEEE-e----------eecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426         10 GDIKLSAGTTLKFDANI-I----------GEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~-~----------g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      +...+.+||.|.|.|.. .          ..+...|.|||++..+...+.-.    .    .+.++              
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~----~----~~~Ri--------------   65 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEII----F----DGVRM--------------   65 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCccc----c----cceeE--------------
Confidence            45789999999999984 1          12233799999986655322100    0    00011              


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                         ......|.|..+..+|+|.|.|.+.|...
T Consensus        66 ---~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~   94 (104)
T cd05896          66 ---SKEEDSIWFRPAELQDSGLYTCVLRNSTY   94 (104)
T ss_pred             ---EEeCCEEEEEeCChhhCeEEEEEECCCCc
Confidence               12256889999999999999999997653

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.77  E-value=5.2e-05  Score=58.21  Aligned_cols=44  Identities=18%  Similarity=0.295  Sum_probs=35.3

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEee-ec-CCeeeeeeCCeeee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIG-EP-VPHVDWRAGGNPLN   44 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~P-~p~v~W~~~~~~l~   44 (616)
                      ||.+..-+|......+++.++|.|.|.| .| ...|+|+|||+.+.
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~   46 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVS   46 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence            6777666677666778899999999988 56 45689999999875

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.76  E-value=0.00025  Score=51.14  Aligned_cols=64  Identities=13%  Similarity=0.141  Sum_probs=46.4

Q ss_pred             EEEEEEEe-eecCceeEEEECCeeecccCcEEEEec---CCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        234 FEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVND---DKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       234 ~~l~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      +.|+|... +.|.+.++|++++..+..... ....+   ...+.|.|.-...+|.+.|+|.|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            67999887 558889999999999854211 00000   012368888888889999999999987754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.75  E-value=0.00038  Score=54.50  Aligned_cols=79  Identities=22%  Similarity=0.317  Sum_probs=54.6

Q ss_pred             cCCeEEEEEEEeeec------CceeEEEECC-----e-eec--ccCc--------EEEE---ecCCceEEEecCCCCCCc
Q psy12426        230 AGSNFEFDINVIGEP------IPTKEWLCND-----I-TII--SKDR--------FKIV---NDDKSTKLKVFDSKRGDS  284 (616)
Q Consensus       230 ~g~~~~l~c~~~~~p------~~~~~W~~~~-----~-~~~--~~~~--------~~~~---~~~~~~~l~i~~l~~~~~  284 (616)
                      .|++++|.|.....+      ...+.|++..     . .+.  .+..        ..+.   ......+|+|.+++..|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            378999999988653      4689999862     1 110  1111        1111   123567999999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEec
Q psy12426        285 GIYTLAVKNSWGTDKGTAKVTVLD  308 (616)
Q Consensus       285 g~y~c~a~n~~g~~~~~~~l~v~~  308 (616)
                      |.|.|.+.+..+.......|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999777667777776653

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.74  E-value=0.00012  Score=55.77  Aligned_cols=78  Identities=13%  Similarity=0.197  Sum_probs=49.1

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecC---CCCCceeEeeeccCCccceeeccccCCCCCceEecCc
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTE---GDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDL   93 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~---~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l   93 (616)
                      |++|+|.|.....+...|.|+|+.......-.......+.   ...-.+++.                .....+|.|.++
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~----------------~~~~~sL~I~~l   64 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRET----------------IYPNGSLLIQNL   64 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEE----------------EcCCceEEEccC
Confidence            8899999998776677899999875432110000010000   000111111                222479999999


Q ss_pred             ccCCeEEEEEEEEcCCC
Q psy12426         94 IEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        94 ~~~~~~~y~c~a~n~~g  110 (616)
                      ++.|+|.|.|......|
T Consensus        65 ~~~DsG~Y~c~v~~~~~   81 (92)
T cd05741          65 TKEDSGTYTLQIISTNG   81 (92)
T ss_pred             CchhcEEEEEEEEcCCC
Confidence            99999999999997654

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.73  E-value=0.00031  Score=55.08  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=54.7

Q ss_pred             cCCeEEEEEEEeeec------CceeEEEECCee-------e-cc----------cCcEEEEec-CCceEEEecCCCCCCc
Q psy12426        230 AGSNFEFDINVIGEP------IPTKEWLCNDIT-------I-IS----------KDRFKIVND-DKSTKLKVFDSKRGDS  284 (616)
Q Consensus       230 ~g~~~~l~c~~~~~p------~~~~~W~~~~~~-------~-~~----------~~~~~~~~~-~~~~~l~i~~l~~~~~  284 (616)
                      .|++++|.|.....|      ...+.|++....       + ..          ..|+.+... ....+|.|.+++..|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            378999999987663      357999985310       1 00          123333211 2356899999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEe
Q psy12426        285 GIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       285 g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      |.|.|.+.+..+.......|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999988877777777664

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.73  E-value=0.00018  Score=55.50  Aligned_cols=68  Identities=22%  Similarity=0.291  Sum_probs=48.8

Q ss_pred             eEEEcCCeEEEEEEEeeecCceeEEEECCee-----e----c----------ccCcEEEEecCCceEEEecCCCCCCcEE
Q psy12426        226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDIT-----I----I----------SKDRFKIVNDDKSTKLKVFDSKRGDSGI  286 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~-----~----~----------~~~~~~~~~~~~~~~l~i~~l~~~~~g~  286 (616)
                      ..+.+|+++.|.|.........+.|+|....     +    .          -..|..+..++   +|.|.++...|+|.
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G~   84 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTGF   84 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCEE
Confidence            3467899999999776555569999996321     1    0          01233333333   99999999999999


Q ss_pred             EEEEEEcCCC
Q psy12426        287 YTLAVKNSWG  296 (616)
Q Consensus       287 y~c~a~n~~g  296 (616)
                      |+|.+.+...
T Consensus        85 Y~~~v~~~~~   94 (105)
T cd05774          85 YTLQTITTNF   94 (105)
T ss_pred             EEEEEEeCCc
Confidence            9999998763

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=97.71  E-value=0.0006  Score=51.60  Aligned_cols=81  Identities=41%  Similarity=0.684  Sum_probs=60.8

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcccc--ccceEEeccccCCCeEEEEEEEEecC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV--SGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~--~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      +|.+ +.+......++.|.|..+.... ..+..|.+.+.......|......  ....+.+.+|.+++.|.+++.+.+..
T Consensus         3 ~p~~-~~~~~~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~   80 (93)
T cd00063           3 PPTN-LRVTDVTSTSVTLSWTPPEDDG-GPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG   80 (93)
T ss_pred             CCCC-cEEEEecCCEEEEEECCCCCCC-CcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCC
Confidence            3443 5555666789999999765432 357889999887655566666553  66789999999999999999999887


Q ss_pred             cCCCC
Q psy12426        390 GESLP  394 (616)
Q Consensus       390 g~~~~  394 (616)
                      |.+.+
T Consensus        81 ~~~~~   85 (93)
T cd00063          81 GESPP   85 (93)
T ss_pred             ccCCC
Confidence            76654

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.68  E-value=0.00026  Score=55.32  Aligned_cols=29  Identities=7%  Similarity=0.070  Sum_probs=24.4

Q ss_pred             CCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      ...+|+|.+|+..|+|.|+|...++....
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~  100 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIEDN  100 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCCCc
Confidence            46799999999999999999999554433

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.68  E-value=0.00019  Score=52.86  Aligned_cols=26  Identities=27%  Similarity=0.668  Sum_probs=22.5

Q ss_pred             eEEEEEEEee-ecCCeeeeeeCCeeee
Q psy12426         19 TLKFDANIIG-EPVPHVDWRAGGNPLN   44 (616)
Q Consensus        19 ~v~l~C~~~g-~P~p~v~W~~~~~~l~   44 (616)
                      .++|+|.+.| +|.+.|+|+|+|+.|.
T Consensus         1 ~~~LtC~a~g~~P~~~ItW~k~g~~l~   27 (83)
T cd07705           1 KAKLRCTSSGSKPAANIKWRKGDQELE   27 (83)
T ss_pred             CEEEEEEecCccCCCEeEEEECCEECC
Confidence            3789999776 6999999999999876

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=97.68  E-value=0.00087  Score=52.86  Aligned_cols=75  Identities=17%  Similarity=0.231  Sum_probs=51.6

Q ss_pred             CcceEEEcCCeEEEEEEEeeec----CceeEEEE---------------CCeeec-cc----CcEEEEe--cCCceEEEe
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP----IPTKEWLC---------------NDITII-SK----DRFKIVN--DDKSTKLKV  276 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p----~~~~~W~~---------------~~~~~~-~~----~~~~~~~--~~~~~~l~i  276 (616)
                      +..+.+..|+.+.|.|......    ...+.|.+               ++.... ..    .|..+..  .....++.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            3557788999999999997642    35899943               222221 00    2333322  134569999


Q ss_pred             cCCCCCCcEEEEEEEEcCCCC
Q psy12426        277 FDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       277 ~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      .+++..|.|.|+|.+.|..+.
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCc
Confidence            999999999999999996654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.66  E-value=0.00015  Score=55.86  Aligned_cols=83  Identities=7%  Similarity=0.014  Sum_probs=50.8

Q ss_pred             CCceEecCCCeEEEEEEEeeecCC--eeeeeeCCeeeee--ccceEEEeecC--CC-CCceeEeeeccCCccceeecccc
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVP--HVDWRAGGNPLNL--RPIWEKCAQTE--GD-TPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~l~~--~G~Y~C~a~n~--~~-~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      +.+..+.+|++|.|.|.-  .|..  .+.|||+......  =..|.=. .+.  .+ ...++..                
T Consensus         5 ~~p~~~~~G~~V~L~v~~--~p~~~~~~~W~kg~~~~~~~~I~~y~~~-~~~~~~gp~~~gR~~----------------   65 (105)
T cd05774           5 LVPPQVAEGENVLLLVHN--LPENLLAYAWYKGKTVSPNFLIASYIIS-TNSSTPGPAYSGRET----------------   65 (105)
T ss_pred             ccCCcccCCCCEEEEecC--CCCCceEEEEEcCCCCCCCEEEEEEECC-CcccccCcccCCcEE----------------
Confidence            555668899999999964  3544  7999996432110  0011110 000  00 0111111                


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      ....++|.|.+++..|+|.|.|.+.+..+
T Consensus        66 ~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~   94 (105)
T cd05774          66 IYPNGSLLIQNVTQKDTGFYTLQTITTNF   94 (105)
T ss_pred             EeCCCcEEEecCCcccCEEEEEEEEeCCc
Confidence            33467999999999999999999997664

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=97.66  E-value=0.00024  Score=56.78  Aligned_cols=71  Identities=17%  Similarity=0.276  Sum_probs=53.4

Q ss_pred             CcceEEEcCCeEEEEEEEee--ecCceeEEEECC--ee---ec--------------ccCcEEEEecC--CceEEEecCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIG--EPIPTKEWLCND--IT---II--------------SKDRFKIVNDD--KSTKLKVFDS  279 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~--~p~~~~~W~~~~--~~---~~--------------~~~~~~~~~~~--~~~~l~i~~l  279 (616)
                      +..+.+.+|++++|.|.+.+  .+...+.|++..  ..   +.              ...++.+....  ....|+|.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            35577889999999999987  677789999842  11   00              12455555444  5678999999


Q ss_pred             CCCCcEEEEEEEEc
Q psy12426        280 KRGDSGIYTLAVKN  293 (616)
Q Consensus       280 ~~~~~g~y~c~a~n  293 (616)
                      +.+|+|.|.|.+..
T Consensus        85 ~~~Dsg~Y~C~~~~   98 (116)
T cd04982          85 EKEDSATYYCAYWE   98 (116)
T ss_pred             CHHHCEEEEEEEec
Confidence            99999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.66  E-value=9.2e-05  Score=56.00  Aligned_cols=51  Identities=10%  Similarity=0.030  Sum_probs=39.3

Q ss_pred             CCceEecCCCeEEEEEEEe-eecCCe--eeeeeCCeeeee--------------------------ccceEEEeecCCCC
Q psy12426          9 LGDIKLSAGTTLKFDANII-GEPVPH--VDWRAGGNPLNL--------------------------RPIWEKCAQTEGDT   59 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~-g~P~p~--v~W~~~~~~l~~--------------------------~G~Y~C~a~n~~~~   59 (616)
                      +....+.+|+.++|+|.+. |.|.+.  |.|||++..|..                          ...|+|+|.+..++
T Consensus         8 ~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755           8 PLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             cCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            4455579999999999965 588887  799999887643                          34888888887543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.65  E-value=0.00033  Score=53.18  Aligned_cols=73  Identities=7%  Similarity=0.028  Sum_probs=48.9

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.|-.  +....|.+|++|+|.|...- +.-.+.|+|+|.....                             |......
T Consensus         2 P~l~a--~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~-----------------------------~~~~~~~   49 (94)
T cd05711           2 PFLSA--HPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPV-----------------------------LHLYEKH   49 (94)
T ss_pred             CEEEe--cCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCc-----------------------------eeccccc
Confidence            44542  34566899999999998654 4447999999864320                             0000000


Q ss_pred             -CCCCCceEecCcccCCeEEEEEEEE
Q psy12426         82 -EGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        82 -~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       ......+.|..+.++|.|.|+|...
T Consensus        50 ~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          50 HGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCeEEEEEEecCCCcccCEEEEEEEE
Confidence             1123478999999999999999976

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.65  E-value=0.0002  Score=57.11  Aligned_cols=90  Identities=8%  Similarity=0.056  Sum_probs=52.3

Q ss_pred             CCCceEecCCCeEEEEEEEe-eecCCeeeeeeCCeeeeeccce-EEE---eecCCCCCceeEeeeccCCccceeeccccC
Q psy12426          8 HLGDIKLSAGTTLKFDANII-GEPVPHVDWRAGGNPLNLRPIW-EKC---AQTEGDTPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~l~~~G~Y-~C~---a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      +|..+.+.+|++|.|.|... ......+.|++....-...-.+ .+.   .........+++..           .....
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~-----------~~~~~   75 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTF-----------SGNGS   75 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEE-----------EEETT
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeee-----------eeccc
Confidence            47888999999999999987 4556689999954311000000 000   00000000001100           00002


Q ss_pred             CCCCceEecCcccCCeEEEEEEEEcC
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                      ....+|.|.+|++.|+|.|.|.....
T Consensus        76 ~~~~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   76 QNNFSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             TTEEEEEESSESGGGEEEEEEEEEES
T ss_pred             CCeEEEEECCCCcCcCEEEEEEEEEC
Confidence            23568999999999999999999854

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.63  E-value=0.00067  Score=53.79  Aligned_cols=75  Identities=13%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             CcceEEEcCCeEEEEEEEeeec----CceeEEEEC----Cee--ec---------cc----CcEEEEe--cCCceEEEec
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP----IPTKEWLCN----DIT--II---------SK----DRFKIVN--DDKSTKLKVF  277 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p----~~~~~W~~~----~~~--~~---------~~----~~~~~~~--~~~~~~l~i~  277 (616)
                      +..+.+.+|+++.|.|.....+    ...+.|++.    +..  +.         ..    .|..+..  .....+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4668899999999999987543    246999752    111  10         01    1222111  1235689999


Q ss_pred             CCCCCCcEEEEEEEEcCCCC
Q psy12426        278 DSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       278 ~l~~~~~g~y~c~a~n~~g~  297 (616)
                      +++..|+|.|.|.+.|..+.
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             eCChhhCEEEEEEEEeCCCC
Confidence            99999999999999986554

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.63  E-value=0.00023  Score=55.78  Aligned_cols=78  Identities=12%  Similarity=0.112  Sum_probs=48.3

Q ss_pred             CCCeEEEEEEEeeec------CCeeeeeeCCe----e--ee--eccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426         16 AGTTLKFDANIIGEP------VPHVDWRAGGN----P--LN--LRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus        16 ~g~~v~l~C~~~g~P------~p~v~W~~~~~----~--l~--~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      .|++|+|.|.....+      .+.|.|+|...    .  +-  ..|.+.-     ...-++++...            ..
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~-----~~~~~~r~~~~------------~~   63 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKV-----YGSGRVRVPLY------------PA   63 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEE-----cCCCceEEEee------------CC
Confidence            489999999977654      46899999731    1  10  0121110     01111122210            11


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      .....+|.|.+++..|+|.|.|.+.+..+
T Consensus        64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~   92 (106)
T cd05714          64 DPGDASLVITDLRLEDSGRYRCEVIDGIE   92 (106)
T ss_pred             CCCcceEEECCCCHHHCEEEEEEEEcCCC
Confidence            33467999999999999999999997544

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.61  E-value=0.00058  Score=52.84  Aligned_cols=76  Identities=16%  Similarity=0.308  Sum_probs=47.9

Q ss_pred             CCeEEEEEEEeeec---CceeEEEECCe-----------eec------ccCcEEEEe---cCCceEEEecCCCCCCcEEE
Q psy12426        231 GSNFEFDINVIGEP---IPTKEWLCNDI-----------TII------SKDRFKIVN---DDKSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       231 g~~~~l~c~~~~~p---~~~~~W~~~~~-----------~~~------~~~~~~~~~---~~~~~~l~i~~l~~~~~g~y  287 (616)
                      |+++.|.|......   ...+.|++...           ...      -..|..+..   ..+..+|.|.+++..|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            56788888875321   23577776441           111      002333321   13456899999999999999


Q ss_pred             EEEEEcCCCCceeeEEEEE
Q psy12426        288 TLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       288 ~c~a~n~~g~~~~~~~l~v  306 (616)
                      +|.+.+..+.......|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999987666555555544

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.60  E-value=0.00023  Score=53.64  Aligned_cols=27  Identities=26%  Similarity=0.676  Sum_probs=23.9

Q ss_pred             CCeEEEEEE-EeeecCCeeeeeeCCeee
Q psy12426         17 GTTLKFDAN-IIGEPVPHVDWRAGGNPL   43 (616)
Q Consensus        17 g~~v~l~C~-~~g~P~p~v~W~~~~~~l   43 (616)
                      |+.+.|+|. ..|+|+|.|+|+.++..+
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~   41 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPV   41 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence            789999997 678999999999999887

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.59  E-value=0.00028  Score=55.31  Aligned_cols=85  Identities=13%  Similarity=0.107  Sum_probs=48.5

Q ss_pred             CCCeEEEEEEEeeec------CCeeeeeeCCee-eeeccce-EEE-eecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426         16 AGTTLKFDANIIGEP------VPHVDWRAGGNP-LNLRPIW-EKC-AQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus        16 ~g~~v~l~C~~~g~P------~p~v~W~~~~~~-l~~~G~Y-~C~-a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      .|++|+|.|.....|      ...|.|+|.... ....-.| .+. ..+..+.-.+++...            .......
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~------------~~~~~~~   68 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR------------RAHDLDA   68 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEec------------CCCCCcE
Confidence            589999999977653      356999997521 1100001 000 001111111222210            0012356


Q ss_pred             ceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      +|.|.+++..|+|.|+|.+.+..+..
T Consensus        69 sL~I~~v~~~DsG~Y~C~v~~~~~~~   94 (106)
T cd05877          69 SLVITDLRLEDYGRYRCEVIDGLEDE   94 (106)
T ss_pred             EEEEccCChHHCEEEEEEEEecccce
Confidence            89999999999999999998765543

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.56  E-value=0.00022  Score=54.93  Aligned_cols=78  Identities=12%  Similarity=0.137  Sum_probs=47.1

Q ss_pred             EecCCCeEEEEEEEeee--cCCeeeeeeCCeeeeeccceEEEeecCCCCC---ceeEeeeccCCccceeeccccCCCCCc
Q psy12426         13 KLSAGTTLKFDANIIGE--PVPHVDWRAGGNPLNLRPIWEKCAQTEGDTP---KGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus        13 ~v~~g~~v~l~C~~~g~--P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~---~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      .|.+|++|+|.|...+.  ....+.|||....    +.-++.+.-..+..   ..+..           ..  .......
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g----~~~~~l~~~~~~~~~~~~~rf~-----------~~--~~~~~~~   64 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPG----SAPRYLIYEDSDRPSGIPDRFS-----------GS--KSGNTAS   64 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCC----CCccEEEEeccccCCCCCCCEE-----------EE--ccCCEEE
Confidence            57899999999998765  5667999985431    00011110000000   01111           00  0123457


Q ss_pred             eEecCcccCCeEEEEEEEEc
Q psy12426         88 GKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n  107 (616)
                      |+|.+++++|+|.|.|.+.+
T Consensus        65 L~I~~~~~~Dsg~Y~C~~~~   84 (98)
T cd04984          65 LTISGAQTEDEADYYCQVWD   84 (98)
T ss_pred             EEECCCChhhCEEEEEEEcc
Confidence            99999999999999999874

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=97.55  E-value=0.00044  Score=52.55  Aligned_cols=64  Identities=20%  Similarity=0.345  Sum_probs=46.4

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecc------------------cCcEEEEecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIIS------------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~------------------~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      |++++|.|.........+.|++.......                  ..|..+..   ..+|.|.+++..|+|.|+|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~---~~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYP---NGSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcC---CceEEEccCCchhcEEEEEEEE
Confidence            67899999888766778999986533110                  12222222   2699999999999999999999


Q ss_pred             cCCCC
Q psy12426        293 NSWGT  297 (616)
Q Consensus       293 n~~g~  297 (616)
                      ...|.
T Consensus        78 ~~~~~   82 (92)
T cd05741          78 STNGV   82 (92)
T ss_pred             cCCCc
Confidence            87644

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=97.54  E-value=0.00037  Score=53.64  Aligned_cols=67  Identities=16%  Similarity=0.189  Sum_probs=50.1

Q ss_pred             EEEcCCeEEEEEEEeee--cCceeEEEECCe--ee---c---------ccCcEEEEecCCceEEEecCCCCCCcEEEEEE
Q psy12426        227 KVRAGSNFEFDINVIGE--PIPTKEWLCNDI--TI---I---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       227 ~v~~g~~~~l~c~~~~~--p~~~~~W~~~~~--~~---~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~  290 (616)
                      .+.+|+++.|.|.....  ....+.|++...  .+   .         ...++..........|.|.++++.|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999998765  456799987432  11   0         12356665556677899999999999999999


Q ss_pred             EEc
Q psy12426        291 VKN  293 (616)
Q Consensus       291 a~n  293 (616)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.53  E-value=0.00045  Score=55.14  Aligned_cols=86  Identities=8%  Similarity=0.002  Sum_probs=53.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeee-cCCeeeeeeCCeeeeeccceEEEeecCCC---CCceeEeeeccCCccceeeccccC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGE-PVPHVDWRAGGNPLNLRPIWEKCAQTEGD---TPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~---~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      +.|..+.+.+|++|+|.|...+. ....+.|||...    .+...+.+.....   .-.+++...           ....
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~----~~~~~~l~~~~~~~~~~~~~R~~~~-----------~~~~   68 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLP----SGEMTFLIRQKSIYGNATKGRYSVN-----------FQKA   68 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECC----CCceEEEEEecCccCCccCCeEEEE-----------Eecc
Confidence            45888999999999999997653 456799998532    1112222211100   001122110           0001


Q ss_pred             CCCCceEecCcccCCeEEEEEEEEc
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ....+|+|.++++.|+|.|.|.+..
T Consensus        69 ~~~~sL~I~~~~~~Dsg~Y~C~~~~   93 (116)
T cd07706          69 QKSISLTISALQLEDSAKYFCALST   93 (116)
T ss_pred             CCEEEEEECCCCHHHCEEEEEEEEC
Confidence            2345799999999999999999984

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.53  E-value=0.00087  Score=51.62  Aligned_cols=75  Identities=15%  Similarity=0.245  Sum_probs=49.8

Q ss_pred             CeEEEEEEEeeec---CceeEEEECCee----e-----------cc--cCcEEEEecC-CceEEEecCCCCCCcEEEEEE
Q psy12426        232 SNFEFDINVIGEP---IPTKEWLCNDIT----I-----------IS--KDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       232 ~~~~l~c~~~~~p---~~~~~W~~~~~~----~-----------~~--~~~~~~~~~~-~~~~l~i~~l~~~~~g~y~c~  290 (616)
                      +++.|.|.....+   ...+.|++....    +           ..  ..|..+.... ...+|+|.+++..|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            3678999887654   447999985431    0           01  1122222111 456999999999999999999


Q ss_pred             EEc-CCCCceeeEEEEE
Q psy12426        291 VKN-SWGTDKGTAKVTV  306 (616)
Q Consensus       291 a~n-~~g~~~~~~~l~v  306 (616)
                      +.+ ..|.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 5577776666665

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.52  E-value=0.00058  Score=52.25  Aligned_cols=77  Identities=16%  Similarity=0.311  Sum_probs=51.2

Q ss_pred             cCCeEEEEEEEee-ecCceeEEEECCeeec--c-----------cCcE--EEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        230 AGSNFEFDINVIG-EPIPTKEWLCNDITII--S-----------KDRF--KIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       230 ~g~~~~l~c~~~~-~p~~~~~W~~~~~~~~--~-----------~~~~--~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .|++++|.|.... .....+.|++....+.  .           ..++  ++.......+|+|.+++..|+|.|.|.+.+
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            5889999998765 4455789988643221  0           0111  122234457999999999999999999998


Q ss_pred             CCCCc-eeeEEEEE
Q psy12426        294 SWGTD-KGTAKVTV  306 (616)
Q Consensus       294 ~~g~~-~~~~~l~v  306 (616)
                      ..|.. ...+.|.|
T Consensus        83 ~~~~~~~~~f~L~v   96 (97)
T cd05775          83 KNGVTITKEFTLHI   96 (97)
T ss_pred             CCCCeEEEEEEEEe
Confidence            76654 44444443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.51  E-value=0.00043  Score=52.52  Aligned_cols=39  Identities=18%  Similarity=0.331  Sum_probs=27.4

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeee-cCC-eeeeeeCCeee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGE-PVP-HVDWRAGGNPL   43 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~l   43 (616)
                      ||.+...++...    |+.++|.|.+.|. |.. .|+|+|+|+.+
T Consensus         2 pP~v~v~~~~~~----~~~~~L~C~a~gF~P~~i~v~W~~~g~~~   42 (93)
T cd07698           2 PPEVRVTRKRAP----DGSLTLSCHATGFYPRDIEVTWLRDGEDS   42 (93)
T ss_pred             CCEEEEEecCCC----CCcEEEEEEEEEEeCCCcEEEEEECCEEC
Confidence            566654433322    7889999999995 544 79999999643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.51  E-value=0.00056  Score=56.64  Aligned_cols=41  Identities=17%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeee-cC-CeeeeeeCCee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGE-PV-PHVDWRAGGNP   42 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~   42 (616)
                      ||.+... +......+|+.++|.|.+.|. |. +.|+|+|+|..
T Consensus        38 ~P~v~~~-~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771          38 PPRVRLS-LEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             CCceEEe-CCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            5666533 444555589999999999985 54 48999999864

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.51  E-value=0.00031  Score=50.83  Aligned_cols=67  Identities=12%  Similarity=0.063  Sum_probs=41.3

Q ss_pred             eEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCC
Q psy12426         19 TLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN   97 (616)
Q Consensus        19 ~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~   97 (616)
                      .+.|+|.+ .+.|++.|+|+|+++++..  .-.+.-.+.   ....+                    ...|.|.--.+.|
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~--~~~~~~~~~---~~~t~--------------------~S~L~~~p~~eDd   55 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGNKELTG--KSTVEETWS---RMFTV--------------------TSQLMLKVTKEDD   55 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECCEECcC--cccceeccC---CCcEE--------------------EEEEEEECchhhC
Confidence            37899994 5699999999999998862  211100000   00011                    2345555445566


Q ss_pred             eEEEEEEEEcCCC
Q psy12426         98 QYEFRVLAVNKGG  110 (616)
Q Consensus        98 ~~~y~c~a~n~~g  110 (616)
                      --.|.|+|.|..-
T Consensus        56 G~~~~C~a~~~~l   68 (82)
T cd05883          56 GVPVICLVDHPAV   68 (82)
T ss_pred             CCEEEEEEcCccc
Confidence            6789999998653

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.50  E-value=0.0012  Score=51.89  Aligned_cols=77  Identities=17%  Similarity=0.297  Sum_probs=53.7

Q ss_pred             CCeEEEEEEEeeec----------CceeEEEECC--eee--c--c----------cCcEEEE---ecCCceEEEecCCCC
Q psy12426        231 GSNFEFDINVIGEP----------IPTKEWLCND--ITI--I--S----------KDRFKIV---NDDKSTKLKVFDSKR  281 (616)
Q Consensus       231 g~~~~l~c~~~~~p----------~~~~~W~~~~--~~~--~--~----------~~~~~~~---~~~~~~~l~i~~l~~  281 (616)
                      |++++|.|.....+          ...+.|++..  ...  .  .          ..|+.+.   ......+|+|.+++.
T Consensus         2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~   81 (110)
T cd05878           2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS   81 (110)
T ss_pred             CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence            78899999987654          3578999852  110  0  0          1233332   123557899999999


Q ss_pred             CCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        282 GDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       282 ~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      .|+|.|.|.+....+.......|.|.
T Consensus        82 sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          82 SDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            99999999999876667777777664

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.50  E-value=0.00068  Score=54.28  Aligned_cols=87  Identities=9%  Similarity=0.020  Sum_probs=50.9

Q ss_pred             CCCCceEecCCCeEEEEEEEeeec------CCeeeeeeCCeeeeeccceEEEe-ecCC----CCCceeEeeeccCCccce
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEP------VPHVDWRAGGNPLNLRPIWEKCA-QTEG----DTPKGKVLDLIEGNHPIW   75 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P------~p~v~W~~~~~~l~~~G~Y~C~a-~n~~----~~~~~~v~~~~~~~~p~w   75 (616)
                      +.|+.+.+.+|+.|+|.|.....+      ...+.|||....-..   ..... .+..    ..-++++...        
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~---~~~~~~~~~~~~~~~~f~gR~~~~--------   72 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKN---RPPVATNNRSRLVHESTRGRFRLL--------   72 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCC---CCcEEEcCCCccccccccccEEEe--------
Confidence            468899999999999999754221      235899996421000   00000 0000    0011111110        


Q ss_pred             eeccccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                         +.......+|+|.+++++|+|.|.|+...
T Consensus        73 ---~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          73 ---GDLGKKNCSLLISDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             ---cCCCCCEEEEEEccCChhhCeEEEEEEEc
Confidence               11123356899999999999999999874

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=97.46  E-value=0.00036  Score=53.41  Aligned_cols=80  Identities=14%  Similarity=0.105  Sum_probs=49.4

Q ss_pred             cCCCeEEEEEEEee-ecCCeeeeeeCCeeeee-cc---ceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceE
Q psy12426         15 SAGTTLKFDANIIG-EPVPHVDWRAGGNPLNL-RP---IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGK   89 (616)
Q Consensus        15 ~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~-~G---~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~   89 (616)
                      ..|++|+|.|.... .....|.|+|....+.. .+   ...+...+.  .-++++..               .....+|.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~--~f~~R~~~---------------~~~~~sL~   64 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDP--SYKERVNF---------------SQNDYSLQ   64 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCC--CceeeEEe---------------cCCceeEE
Confidence            46999999998654 45567999998543332 11   111111110  00111110               22357899


Q ss_pred             ecCcccCCeEEEEEEEEcCCCC
Q psy12426         90 VLDLIEGNQYEFRVLAVNKGGP  111 (616)
Q Consensus        90 i~~l~~~~~~~y~c~a~n~~g~  111 (616)
                      |.+++..|+|.|.|...+..|.
T Consensus        65 I~~~~~~DsG~Y~c~v~~~~~~   86 (97)
T cd05775          65 ISNLKMEDAGSYRAEINTKNGV   86 (97)
T ss_pred             ECCCchHHCEEEEEEEEcCCCC
Confidence            9999999999999999976653

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.42  E-value=0.00077  Score=52.89  Aligned_cols=29  Identities=7%  Similarity=-0.012  Sum_probs=24.1

Q ss_pred             CCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      ...+|+|.+|+..|+|.|.|.........
T Consensus        70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~   98 (110)
T cd05878          70 GDASLEISRLRSSDSGVYRCEVMHGIEDE   98 (110)
T ss_pred             CcEEEEECCCChhhCEEEEEEEEeCCCcc
Confidence            45689999999999999999998654433

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.41  E-value=0.00048  Score=57.49  Aligned_cols=83  Identities=12%  Similarity=0.123  Sum_probs=53.7

Q ss_pred             CCceEecCCCeEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426          9 LGDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      ...++|.+|++|+|.|.. .+...++|+|+|..+.+.   .|.+.-....+.-++++.-.            ........
T Consensus        22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~Ia---tY~~~g~~i~~~Fk~Rve~m------------S~s~~~St   86 (189)
T PHA02987         22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIA---GYGPCGPVIVDKFKNKIEYL------------SKSFNEST   86 (189)
T ss_pred             eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEE---EEecCCcEEChhhcCeEEEe------------ccCCCcce
Confidence            456789999999999996 476788999999765332   33321100000011122111            00224578


Q ss_pred             eEecCcccCCeEEEEEEEE
Q psy12426         88 GKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~  106 (616)
                      ++|.++...|+|.|.|...
T Consensus        87 ItIknVt~sDeGcY~C~F~  105 (189)
T PHA02987         87 ILIKNVSLKDNGCYTCIFN  105 (189)
T ss_pred             EEEEeCChhhCeEEEEEEE
Confidence            9999999999999999976

>PHA03376 BARF1; Provisional

Probab=97.41  E-value=0.0073  Score=50.25  Aligned_cols=79  Identities=10%  Similarity=-0.019  Sum_probs=43.9

Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeE
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE  249 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~  249 (616)
                      +..+|.|.+++++|.|.|+|............+-.  ..++    |-.+.+.... .....-+...+.|...|-|.|.++
T Consensus        85 gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehL--t~V~----~~~Lsv~a~~-~dFp~~~~~~i~C~sggfP~P~~~  157 (221)
T PHA03376         85 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL--SVVK----PLTLSVHSER-SQFPDFSVLTVTCTVNAFPHPHVQ  157 (221)
T ss_pred             CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeee--eeee----cceEEEEecc-ccCCCCCeeEEEEecCCcCCchhe
Confidence            44478899999999999999887644322111000  0000    0000000000 001114456789998888999999


Q ss_pred             EEECCe
Q psy12426        250 WLCNDI  255 (616)
Q Consensus       250 W~~~~~  255 (616)
                      |.-+..
T Consensus       158 Wle~~~  163 (221)
T PHA03376        158 WLMPEG  163 (221)
T ss_pred             eccccC
Confidence            997654

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.40  E-value=0.0017  Score=51.74  Aligned_cols=75  Identities=20%  Similarity=0.286  Sum_probs=50.3

Q ss_pred             CcceEEEcCCeEEEEEEEeeec----CceeEEEECCe------eec----------cc----CcEEEEe--cCCceEEEe
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP----IPTKEWLCNDI------TII----------SK----DRFKIVN--DDKSTKLKV  276 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p----~~~~~W~~~~~------~~~----------~~----~~~~~~~--~~~~~~l~i  276 (616)
                      +..+.+..|+.++|.|......    ...+.|++...      .+.          ..    .|+.+..  .....+|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4567888999999999986542    24699976321      110          01    1222221  123468999


Q ss_pred             cCCCCCCcEEEEEEEEcCCCC
Q psy12426        277 FDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       277 ~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      .+++.+|+|.|.|.+.|..+.
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCC
Confidence            999999999999999986543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.39  E-value=0.0007  Score=52.38  Aligned_cols=27  Identities=4%  Similarity=0.011  Sum_probs=23.6

Q ss_pred             CCceEecCcccCCeEEEEEEEEcCCCC
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVNKGGP  111 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n~~g~  111 (616)
                      ..+|.|.+|+..|+|.|.|.+.|..+.
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~   90 (100)
T cd05713          64 SVALRIHNVRASDEGLYTCFFQSDGFY   90 (100)
T ss_pred             cEEEEEEcCChhhCEEEEEEEecCCcE
Confidence            568999999999999999999976553

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.37  E-value=0.0018  Score=54.14  Aligned_cols=85  Identities=19%  Similarity=0.226  Sum_probs=61.3

Q ss_pred             cceEEEcCCeEEEEEEEe-eecCceeEEEECCeeec----------c--cCcEE-EEecCCceEEEecCCCCCCcEEEEE
Q psy12426        224 SDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITII----------S--KDRFK-IVNDDKSTKLKVFDSKRGDSGIYTL  289 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~-~~p~~~~~W~~~~~~~~----------~--~~~~~-~~~~~~~~~l~i~~l~~~~~g~y~c  289 (616)
                      ..+.|.+|+++.|.|... +...+.+.|+|....+.          +  ..|+. +...-....++|.++...|+|.|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            457789999999999984 65678899999643321          1  12444 3334455799999999999999999


Q ss_pred             EEEc-CCC-CceeeEEEEEec
Q psy12426        290 AVKN-SWG-TDKGTAKVTVLD  308 (616)
Q Consensus       290 ~a~n-~~g-~~~~~~~l~v~~  308 (616)
                      .... ..| ..+...-|.|..
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~  123 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTT  123 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEc
Confidence            8876 445 556666666654

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.37  E-value=0.00083  Score=50.98  Aligned_cols=68  Identities=7%  Similarity=-0.055  Sum_probs=47.3

Q ss_pred             ceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      ...|..|++++|.|.... ....+.|+|++...................|.|..++++|+|.|+|....
T Consensus         9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            456779999999997755 45679999988653210000011122345889999999999999999864

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.35  E-value=0.0011  Score=47.84  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=20.9

Q ss_pred             eEEEEEEEeee-cC-CeeeeeeCCeeee
Q psy12426         19 TLKFDANIIGE-PV-PHVDWRAGGNPLN   44 (616)
Q Consensus        19 ~v~l~C~~~g~-P~-p~v~W~~~~~~l~   44 (616)
                      .++|.|.|.|. |+ ..|+|+|||+++.
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~   28 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVT   28 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECC
Confidence            37899999985 55 5899999998743

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.29  E-value=0.00048  Score=53.94  Aligned_cols=44  Identities=11%  Similarity=0.277  Sum_probs=33.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEee-ecCC-eeeeeeCCeeee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIG-EPVP-HVDWRAGGNPLN   44 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~l~   44 (616)
                      ||.+..-+|....+.+++.++|.|.|.| .|.. .|+|+|||+.+.
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~   47 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVT   47 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence            5766555566666667888999999998 5653 789999998876

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.21  E-value=0.0016  Score=50.94  Aligned_cols=89  Identities=9%  Similarity=0.051  Sum_probs=46.2

Q ss_pred             eEecCCCeEEEEEEEeeec-CCeeeeeeCCeeeeecc-ceEEEeecCCCCCceeEeeeccCC-ccceeeccccCCCCCce
Q psy12426         12 IKLSAGTTLKFDANIIGEP-VPHVDWRAGGNPLNLRP-IWEKCAQTEGDTPKGKVLDLIEGN-HPIWEKCAQTEGDTPKG   88 (616)
Q Consensus        12 ~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~l~~~G-~Y~C~a~n~~~~~~~~v~~~~~~~-~p~w~~~~~~~~~~~~l   88 (616)
                      +.|.+|++|+|.|.+.+.. ...+.|||....-...+ .|--...+.. .   ...  .+.- .+..............|
T Consensus         1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~-~---~~~--~~~~~~~rf~~~~~~~~~~~~L   74 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLG-G---ATY--GEEVSQEKFSIRVTSDSSRYRL   74 (107)
T ss_pred             CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCC-C---eEE--ccccccCcEEEEEECCCCEEEE
Confidence            3689999999999987643 45799998643200000 0000000000 0   000  0000 00000000001223469


Q ss_pred             EecCcccCCeEEEEEEEE
Q psy12426         89 KVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~  106 (616)
                      +|.++++.|+|.|.|...
T Consensus        75 ~I~~~~~~Dsg~YyCa~~   92 (107)
T cd07700          75 HINRVKPEDSGTYFCMTV   92 (107)
T ss_pred             EECCCCHHHCEEEEEeEc
Confidence            999999999999999986

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.18  E-value=0.0043  Score=48.31  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=50.9

Q ss_pred             CCeEEEEEEEeeec-------CceeEEEECC-----eee----cc----------cCcEEEEec---CCceEEEecCCCC
Q psy12426        231 GSNFEFDINVIGEP-------IPTKEWLCND-----ITI----IS----------KDRFKIVND---DKSTKLKVFDSKR  281 (616)
Q Consensus       231 g~~~~l~c~~~~~p-------~~~~~W~~~~-----~~~----~~----------~~~~~~~~~---~~~~~l~i~~l~~  281 (616)
                      |+++.|.|...-.|       .+.+.|.+..     ...    ..          ..|..+...   .+..+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            56788888865332       3578888741     110    00          123334321   2467999999999


Q ss_pred             CCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        282 GDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       282 ~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      .|+|.|+|.+............|.|.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999866666667766664

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.18  E-value=0.00058  Score=52.56  Aligned_cols=43  Identities=23%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeCCeeee
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAGGNPLN   44 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~l~   44 (616)
                      |.+.+-+|....+..|+.++|.|.|.|.-++  .|+|+|||+++.
T Consensus         1 P~v~l~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~   45 (102)
T cd05768           1 PSVYVLPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS   45 (102)
T ss_pred             CeEEEeCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence            4444445555556678999999999994443  479999998875

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.17  E-value=0.0024  Score=49.84  Aligned_cols=34  Identities=26%  Similarity=0.540  Sum_probs=27.4

Q ss_pred             ceEecCCCeEEEEEEEee-ecC-CeeeeeeCCeeee
Q psy12426         11 DIKLSAGTTLKFDANIIG-EPV-PHVDWRAGGNPLN   44 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~l~   44 (616)
                      ...+..|+.++|.|.+.| .|. ..|+|+|||+.+.
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~   50 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS   50 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence            344567889999999887 564 5799999999875

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.17  E-value=0.001  Score=51.24  Aligned_cols=83  Identities=8%  Similarity=-0.009  Sum_probs=49.2

Q ss_pred             eEecCCCeEEEEEEEee-ecCCeeeeeeCCeeeeeccceEEEeecCC--CCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426         12 IKLSAGTTLKFDANIIG-EPVPHVDWRAGGNPLNLRPIWEKCAQTEG--DTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus        12 ~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~--~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      +.+.+|++|+|.|.... .+...+.|+|....-.    -.....+..  ..-.++....           .........|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~----~~~l~~~~~~~~~~~~r~~~~-----------~~~~~~~~~L   66 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGC----CLIIVSEGSVQSQYEGRVSLT-----------DDPDNGVFTV   66 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCC----CeEEECCCccccccCCCEEEE-----------ecCCCCEEEE
Confidence            46899999999998654 4566799999753211    111110100  0011111110           0012234579


Q ss_pred             EecCcccCCeEEEEEEEEcCC
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~  109 (616)
                      +|.+++.+|+|.|.|.+....
T Consensus        67 ~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          67 TLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             EEcCCCHHHCEEEEEEcccCC
Confidence            999999999999999987543

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=97.17  E-value=0.032  Score=51.28  Aligned_cols=160  Identities=13%  Similarity=0.086  Sum_probs=95.5

Q ss_pred             CCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc---cccceEEeccccCCCeEEEEEEEEecCcCCCCccccCC
Q psy12426        324 KSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD---VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSP  400 (616)
Q Consensus       324 ~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~  400 (616)
                      ...+.+-|.+..+.   +...|.|+....+.. +.+.+.   ...-.+.-.++.++..|.+.+.+.+..+.-..+  +..
T Consensus        83 ~~~~~~~w~~~~d~---~~~~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs--f~g  156 (343)
T COG3401          83 PKSVKVFWSPHPDV---SVGKYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS--FTG  156 (343)
T ss_pred             cceeeecccccCCC---CCCeEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceee--eee
Confidence            34589999975443   567888888765544 444332   222334555888999999999998776653332  222


Q ss_pred             EEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeE
Q psy12426        401 ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEY  479 (616)
Q Consensus       401 ~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y  479 (616)
                      +.. ++...|..-.++.+.....+.+.|+|..+..     +..|+|+-...+. ..........+.......+|  |..|
T Consensus       157 VE~-~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~-----~~yy~IY~~~~g~e~~~~ia~t~~n~y~d~~egl--ga~~  228 (343)
T COG3401         157 VEA-TPKAEPKEITNVRVSFDLGNNIELSEDGSEA-----EDYYRIYASDSGNEEYGFIAQTTENSYYDVKEGL--GAVE  228 (343)
T ss_pred             eec-ccccCCceeeeeeeecCCCCcceeeccCccc-----cceEEEeccCCccccccceeeccccchhhhhhcc--Ccee
Confidence            222 2223333334455556678899999986543     2378888766554 33333333223333334444  7889


Q ss_pred             EEEEEEEcCCC-CCCCCCC
Q psy12426        480 EFRVIAVNKGG-PGEPSKA  497 (616)
Q Consensus       480 ~~~v~a~n~~G-~g~~s~~  497 (616)
                      .+.|.++...| .+..+..
T Consensus       229 ~y~VTtVd~~~~es~lp~~  247 (343)
T COG3401         229 YYKVTTVDNTGFESDLPNE  247 (343)
T ss_pred             EEEEEEEcCCcceeccCCc
Confidence            99999988554 5555543

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.17  E-value=0.0027  Score=50.55  Aligned_cols=88  Identities=17%  Similarity=0.132  Sum_probs=49.0

Q ss_pred             CCCceEecCCCeEEEEEEEeeec--CCeeeeeeCC--eeee-eccceEEEeecC--CCCCceeEeeeccCCccceeeccc
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEP--VPHVDWRAGG--NPLN-LRPIWEKCAQTE--GDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~~l~-~~G~Y~C~a~n~--~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      .|....+.+|++|+|.|...+.-  ...+.|||..  +.+. +.-.|. .....  ....+++...           ...
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~-~~~~~~~~~~~~~rf~~-----------~~~   70 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINP-GGGETYYADSVKGRFTI-----------TRD   70 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEec-CCCceEeCcccCCcEEE-----------EEE
Confidence            47788899999999999876543  4569999853  2211 000000 00000  0000011110           000


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      .......|+|.++.++|++.|.|.+..
T Consensus        71 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          71 TSKSTVYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             ccCCEEEEEECCCCHHHCEEEEEEEEc
Confidence            011224699999999999999998874

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.17  E-value=0.0078  Score=47.03  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=32.8

Q ss_pred             CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       270 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      +..+|.|.+++..|.|.|+|.+.+..........|.|.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            45799999999999999999999988777777777664

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.16  E-value=0.0041  Score=47.87  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=48.4

Q ss_pred             eEEEEEEEeeec---CceeEEEECCee-----e---c--------cc--CcEEEEe--cCCceEEEecCCCCCCcEEEEE
Q psy12426        233 NFEFDINVIGEP---IPTKEWLCNDIT-----I---I--------SK--DRFKIVN--DDKSTKLKVFDSKRGDSGIYTL  289 (616)
Q Consensus       233 ~~~l~c~~~~~p---~~~~~W~~~~~~-----~---~--------~~--~~~~~~~--~~~~~~l~i~~l~~~~~g~y~c  289 (616)
                      ++.|.|......   ...+.|++....     +   .        ..  .|..+..  .....+|+|.+++..|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            577888887544   447889883211     1   0        00  2333332  2345689999999999999999


Q ss_pred             EEEc-CCCCceeeEEEEE
Q psy12426        290 AVKN-SWGTDKGTAKVTV  306 (616)
Q Consensus       290 ~a~n-~~g~~~~~~~l~v  306 (616)
                      .+.+ ..|.......|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9998 6666666666654

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.15  E-value=0.0026  Score=50.74  Aligned_cols=71  Identities=18%  Similarity=0.202  Sum_probs=52.0

Q ss_pred             CcceEEEcCCeEEEEEEEeee-cCceeEEEECC--ee---e---------cccCcEEEEe--cCCceEEEecCCCCCCcE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGE-PIPTKEWLCND--IT---I---------ISKDRFKIVN--DDKSTKLKVFDSKRGDSG  285 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~-p~~~~~W~~~~--~~---~---------~~~~~~~~~~--~~~~~~l~i~~l~~~~~g  285 (616)
                      +..+.+..|+++.|.|..... ....+.|++..  ..   +         ....|+.+..  .....+|.|.+++..|+|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg   85 (116)
T cd07706           6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSA   85 (116)
T ss_pred             CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCE
Confidence            456788999999999998754 45679999832  11   1         1124555542  345678999999999999


Q ss_pred             EEEEEEEc
Q psy12426        286 IYTLAVKN  293 (616)
Q Consensus       286 ~y~c~a~n  293 (616)
                      .|.|.+..
T Consensus        86 ~Y~C~~~~   93 (116)
T cd07706          86 KYFCALST   93 (116)
T ss_pred             EEEEEEEC
Confidence            99999985

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.13  E-value=0.0022  Score=51.04  Aligned_cols=72  Identities=21%  Similarity=0.312  Sum_probs=52.2

Q ss_pred             CcceEEEcCCeEEEEEEEe-eecCceeEEEECCe-----eec--------------ccCcEEEEec--CCceEEEecCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDI-----TII--------------SKDRFKIVND--DKSTKLKVFDSK  280 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~-~~p~~~~~W~~~~~-----~~~--------------~~~~~~~~~~--~~~~~l~i~~l~  280 (616)
                      +..+.+..|+++.|.|... ......+.|++...     .+.              ...+..+...  ....+|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            4567899999999999999 44566899998322     111              0123333322  346789999999


Q ss_pred             CCCcEEEEEEEEcC
Q psy12426        281 RGDSGIYTLAVKNS  294 (616)
Q Consensus       281 ~~~~g~y~c~a~n~  294 (616)
                      ..|+|.|.|.+...
T Consensus        88 ~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   88 PSDSGTYFCQVSTS  101 (114)
T ss_dssp             GGGEEEEEEEEEES
T ss_pred             cCcCEEEEEEEEEC
Confidence            99999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.12  E-value=0.0059  Score=46.12  Aligned_cols=74  Identities=16%  Similarity=0.220  Sum_probs=50.0

Q ss_pred             eEEEEEEEeeec-CceeEEEECCe----eec-----------c--cCcEEEE-ecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        233 NFEFDINVIGEP-IPTKEWLCNDI----TII-----------S--KDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       233 ~~~l~c~~~~~p-~~~~~W~~~~~----~~~-----------~--~~~~~~~-~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      +++|.|.....+ ..++.|.+...    .+.           .  ..|..+. ......+|.|.++...|.|.|+|.+.+
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t   81 (96)
T cd05887           2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT   81 (96)
T ss_pred             CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence            578899887433 34789987421    110           0  1233332 123356999999999999999999866


Q ss_pred             -CCCCceeeEEEEE
Q psy12426        294 -SWGTDKGTAKVTV  306 (616)
Q Consensus       294 -~~g~~~~~~~l~v  306 (616)
                       ..|....+..|.|
T Consensus        82 fP~G~~~~~~~l~~   95 (96)
T cd05887          82 FPLGNTQSSTTVTV   95 (96)
T ss_pred             CCCCCeeEEEEEEE
Confidence             6788888877765

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.10  E-value=0.0034  Score=48.09  Aligned_cols=76  Identities=22%  Similarity=0.240  Sum_probs=48.8

Q ss_pred             CCeEEEEEEEeeecC-ceeEEEECCee----ec-----c--------cCcEEEE-ecCCceEEEecCCCCCCcEEEEEEE
Q psy12426        231 GSNFEFDINVIGEPI-PTKEWLCNDIT----II-----S--------KDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       231 g~~~~l~c~~~~~p~-~~~~W~~~~~~----~~-----~--------~~~~~~~-~~~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      |++++|.|....... ..+.|++....    +.     .        ..+..+. ......+|.|.+++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            678999998665433 36999884321    10     0        0122221 1234578999999999999999998


Q ss_pred             Ec-CCCCceeeEEEEE
Q psy12426        292 KN-SWGTDKGTAKVTV  306 (616)
Q Consensus       292 ~n-~~g~~~~~~~l~v  306 (616)
                      .. ..|.......|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            75 5566565555554

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>KOG4152|consensus

Probab=97.10  E-value=0.0041  Score=59.77  Aligned_cols=123  Identities=26%  Similarity=0.458  Sum_probs=79.9

Q ss_pred             EeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEE
Q psy12426        369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK  448 (616)
Q Consensus       369 ~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~  448 (616)
                      .-..|..|..|.|+|.+.|..|.+.++......++  ..+.|.+|..+.+.. +-..+.|.|++|..++.+.|..|..+.
T Consensus       650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc--~pG~P~apS~~ri~k-~~eGi~l~weppt~p~sg~Iieys~yl  726 (830)
T KOG4152|consen  650 VKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTC--APGKPTAPSGARIKK-TIEGISLVWEPPTKPGSGTIIEYSPYL  726 (830)
T ss_pred             cccccccccceeeeeeeeeccCCCchhhheeeeec--cCCCCCCcccccccc-cccceeecccCCCCCCCcceEEeehhh
Confidence            33578899999999999999999988765444332  235666666655442 456799999998888777888888765


Q ss_pred             eeCCC-------C--ceE--------eEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCC
Q psy12426        449 KPKYG-------P--WEK--------ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS  495 (616)
Q Consensus       449 ~~~~~-------~--~~~--------~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s  495 (616)
                      .-...       +  +..        +....+. .-.-+.+..-+-.-.|||.|.|+.|.|+..
T Consensus       727 Ai~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~-l~tA~~d~t~~paivfri~aknekGyGpat  789 (830)
T KOG4152|consen  727 AIITQAGATGVSQLPFMRSYCGIITTCVVTSGK-LITAVPDITTGPAIVFRIVAKNEKGYGPAT  789 (830)
T ss_pred             HhhhhhhccCccccceeeeecccceeeEEeccc-ceeeccccccCcceEEEEEecCCCCCCcce
Confidence            32110       1  111        1111121 111122344466789999999999988743

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.08  E-value=0.0047  Score=45.14  Aligned_cols=72  Identities=33%  Similarity=0.554  Sum_probs=47.4

Q ss_pred             ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC---CCEEEccccc-cceEEeccccCCCeEEEEEEEEecCcC
Q psy12426        317 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET---GRWVPMGDVS-GTYTRAENLIEGHDYNFRVKAVNKIGE  391 (616)
Q Consensus       317 ~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~---~~~~~~~~~~-~~~~~i~~L~~~~~y~~~v~a~n~~g~  391 (616)
                      +.+......++.++|.++.....   ..|.+.+.....   ..|....... ...+.+.+|.+++.|.+++.|.+..|.
T Consensus         7 ~~~~~~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g~   82 (83)
T smart00060        7 LRVTDVTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAGE   82 (83)
T ss_pred             EEEEEEeCCEEEEEECCCCCCCC---CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcccCC
Confidence            45555666699999996644321   455555543221   2344433322 478999999999999999999986553

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>KOG4367|consensus

Probab=97.08  E-value=0.00057  Score=63.59  Aligned_cols=79  Identities=27%  Similarity=0.361  Sum_probs=63.9

Q ss_pred             cCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCC
Q psy12426        422 GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAP  500 (616)
Q Consensus       422 ~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~  500 (616)
                      ..++++|.|..|..+ +.+..+|.++....++ ++..  ...+..+..++++|.-++.|.-||.|+|..|.+++|.....
T Consensus       451 ~nns~t~~wkqp~~~-~~~~dg~~leld~g~~g~fre--vy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~l  527 (699)
T KOG4367|consen  451 HNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFRE--VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL  527 (699)
T ss_pred             cCCceEEEeecCCCC-CCCCcceEEEeecCCCCceeE--EEecCceeEEecceecchhHHHHHHHhhccCCCcccceeEe
Confidence            578999999976654 4468999999977655 5544  34477889999999999999999999999999999986554


Q ss_pred             EEe
Q psy12426        501 VTC  503 (616)
Q Consensus       501 ~~~  503 (616)
                      .|.
T Consensus       528 qts  530 (699)
T KOG4367|consen  528 QTS  530 (699)
T ss_pred             eec
Confidence            443

>KOG4152|consensus

Probab=97.05  E-value=0.001  Score=63.82  Aligned_cols=75  Identities=32%  Similarity=0.564  Sum_probs=56.7

Q ss_pred             CCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeee
Q psy12426        471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKL  550 (616)
Q Consensus       471 ~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (616)
                      .+|-+|+.|+|||.|+|..|.|++|......++-+                                             
T Consensus       652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~p---------------------------------------------  686 (830)
T KOG4152|consen  652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAP---------------------------------------------  686 (830)
T ss_pred             cccccccceeeeeeeeeccCCCchhhheeeeeccC---------------------------------------------
Confidence            56889999999999999999999999888777643                                             


Q ss_pred             eeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEE
Q psy12426        551 SYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVER  595 (616)
Q Consensus       551 ~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~  595 (616)
                          .-|.+|.... +..+-..|.|.|++|...+.|.|..|..+.
T Consensus       687 ----G~P~apS~~r-i~k~~eGi~l~weppt~p~sg~Iieys~yl  726 (830)
T KOG4152|consen  687 ----GKPTAPSGAR-IKKTIEGISLVWEPPTKPGSGTIIEYSPYL  726 (830)
T ss_pred             ----CCCCCccccc-ccccccceeecccCCCCCCCcceEEeehhh
Confidence                1233443332 223556789999999877788888887654

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.01  E-value=0.0059  Score=48.84  Aligned_cols=73  Identities=18%  Similarity=0.230  Sum_probs=50.5

Q ss_pred             CCcceEEEcCCeEEEEEEEeeec------CceeEEEECCee------e--c---------ccCcEEEE--ecCCceEEEe
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEP------IPTKEWLCNDIT------I--I---------SKDRFKIV--NDDKSTKLKV  276 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p------~~~~~W~~~~~~------~--~---------~~~~~~~~--~~~~~~~l~i  276 (616)
                      .|..+.+..|+.++|.|......      ...+.|++....      +  .         ...|+.+.  ......+|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            35667899999999999875332      346899985321      0  0         01244442  2344578999


Q ss_pred             cCCCCCCcEEEEEEEEcC
Q psy12426        277 FDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       277 ~~l~~~~~g~y~c~a~n~  294 (616)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999988764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=96.99  E-value=0.0029  Score=47.86  Aligned_cols=30  Identities=20%  Similarity=0.308  Sum_probs=24.9

Q ss_pred             cCCCeEEEEEEEee-ecCC-eeeeeeCCeeee
Q psy12426         15 SAGTTLKFDANIIG-EPVP-HVDWRAGGNPLN   44 (616)
Q Consensus        15 ~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~l~   44 (616)
                      ..|+.++|.|.|.| .|.. .++|+|||+.+.
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~   43 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEET   43 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecC
Confidence            46899999999998 5554 689999999865

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=96.96  E-value=0.0053  Score=47.18  Aligned_cols=69  Identities=14%  Similarity=0.186  Sum_probs=49.6

Q ss_pred             eEEEcCCeEEEEEEEeee-cCceeEEEECCee-----e--------cccCcEEEEe--cCCceEEEecCCCCCCcEEEEE
Q psy12426        226 IKVRAGSNFEFDINVIGE-PIPTKEWLCNDIT-----I--------ISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTL  289 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~-p~~~~~W~~~~~~-----~--------~~~~~~~~~~--~~~~~~l~i~~l~~~~~g~y~c  289 (616)
                      +.+.+|++++|.|..... ....+.|++....     +        ....++.+..  ......|.|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            457899999999988753 4567899985421     1        0123444432  2445789999999999999999


Q ss_pred             EEEcC
Q psy12426        290 AVKNS  294 (616)
Q Consensus       290 ~a~n~  294 (616)
                      .+...
T Consensus        82 ~~~~~   86 (98)
T cd05716          82 GVGDD   86 (98)
T ss_pred             EcccC
Confidence            98764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>KOG3632|consensus

Probab=96.93  E-value=0.0022  Score=66.42  Aligned_cols=222  Identities=15%  Similarity=0.118  Sum_probs=123.8

Q ss_pred             ccceeecCCeEEEEEeCCCCCC-CCceEEEEEEEEeCCCCCEEEccccccceEEecccc-CCCeEEEEEEEEecCcCCCC
Q psy12426        317 LKPSNITKSSCNLEWRAPRDDG-GTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLI-EGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       317 ~~~~~~~~~~~~l~W~~~~~~~-~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~-~~~~y~~~v~a~n~~g~~~~  394 (616)
                      +.+......++.+.|++|.... ..+...|.+....   ...........+...+..|. .+..|.+.|.+....|....
T Consensus       584 ~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~---elrq~l~~gs~tka~~E~ld~~a~s~~isvq~ltSrGsqd~  660 (1335)
T KOG3632|consen  584 GAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLM---ELRQTLYAGSLTKAMQESLDNSAHSGYISVQRLTSRGSQDQ  660 (1335)
T ss_pred             hhhhhhhccceeeeccCCCCCCccccceeeeeecch---hhhhhcccccchHHHHhhccccCCceeeehhhhhccCCCCc
Confidence            3444566788999999866532 3344455443211   11111111222222233332 24467777777777777654


Q ss_pred             ccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCC
Q psy12426        395 LVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLK  474 (616)
Q Consensus       395 ~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~  474 (616)
                      .    ..........+..|.++++-.++..+..++|-+- +.+.     -.+.|-...    ...........|+|.+|.
T Consensus       661 l----rc~Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~-nsn~-----~Hviyln~e----E~~ps~a~~y~ytf~~lr  726 (1335)
T KOG3632|consen  661 L----RCILLVGGAAPVVPSQLRVWNATQTSAMITWVPF-NSNF-----LHVIYLNAE----EPRPSVAEMYNYTFMRLR  726 (1335)
T ss_pred             c----eeeEeccccccccchhhhhhhhhchhhheeeeec-CCCc-----ceeeecCCc----cCCCchhhhhHHHHhccC
Confidence            2    2333334567788999999999999999999852 2221     122232222    112233446688999999


Q ss_pred             CCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeee
Q psy12426        475 EGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYID  554 (616)
Q Consensus       475 p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  554 (616)
                      |++.|..+|-|.-.- .++|-.......++..+  -                                     ..-....
T Consensus       727 pgt~y~a~vea~~p~-q~pwdl~~v~~etr~at--v-------------------------------------~f~tLpA  766 (1335)
T KOG3632|consen  727 PGTDYWASVEAALPR-QEPWDLRMVPMETRQAT--V-------------------------------------LFRTLPA  766 (1335)
T ss_pred             CCCccceecccccCc-CCCcccccchhhhhccc--e-------------------------------------eeecccC
Confidence            999999999885441 22232222211111100  0                                     0000112


Q ss_pred             cCCCCCCCCeE-EeecCCcEEEEeeCCCCC-----CCCceeeeEEEE
Q psy12426        555 NVPGKPSKPEA-TDVDKDHIKIKWQQPISN-----GGSAIKGYEVER  595 (616)
Q Consensus       555 ~~~~~P~~~~~-~~~~~~~i~l~W~~p~~~-----~~~~i~~Y~i~~  595 (616)
                      .+|.+|-.+++ ...+...+.++|.||.-+     ++-.+++|.|+-
T Consensus       767 GppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavya  813 (1335)
T KOG3632|consen  767 GPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYA  813 (1335)
T ss_pred             CCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeee
Confidence            34666666664 567889999999997622     356789999853

>COG4733 Phage-related protein, tail component [Function unknown]

Probab=96.93  E-value=0.032  Score=57.53  Aligned_cols=138  Identities=17%  Similarity=0.161  Sum_probs=85.8

Q ss_pred             CCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCC
Q psy12426        354 TGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPP  433 (616)
Q Consensus       354 ~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p  433 (616)
                      +..|..........+.+.++.+| +|..+|+|.|..|....-..+....+..+..+|..+..+....+ .-.+.|.|-.|
T Consensus       648 ~~~~vta~rt~~~~~~~~gi~~G-qY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~i-t~~~~l~v~dP  725 (952)
T COG4733         648 DGNWITAPRTSAAGFDVEGIPAG-QYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVII-TLVIRLVVGDP  725 (952)
T ss_pred             CCceEecccccccceeecCcCcc-ceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEE-EeeeeEEEecC
Confidence            34788888888889999999985 89999999999997655444556666655555555544444433 24578888765


Q ss_pred             CCCCCCcceeEEEEEeeCCCCceEeEeecCCc--cEEEcCCCCCCCeEEEEEEEEcCCCCCCCCC
Q psy12426        434 KKDGGSPISQYIIEKKPKYGPWEKACIVPANI--TATSVPDLKEGEEYEFRVIAVNKGGPGEPSK  496 (616)
Q Consensus       434 ~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~--~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~  496 (616)
                      .  ....+..-.+++....+. ......-++.  ....-.+|.++..|.|+++++|..|.+.+-+
T Consensus       726 t--~~~d~~~sei~~s~~~d~-~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~e  787 (952)
T COG4733         726 T--GAVDITSTEIRSAVIADG-NFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKWE  787 (952)
T ss_pred             C--cceEEeeeeeeeeccccc-hhHHhhhhccccccccccCcCCCceEEEEeeecccccccccce
Confidence            3  222233333333332220 0000011111  1122268999999999999999999876443

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=96.92  E-value=0.0044  Score=48.50  Aligned_cols=67  Identities=21%  Similarity=0.300  Sum_probs=46.6

Q ss_pred             EEEcCCeEEEEEEEeeec-CceeEEEECCee--------e---c-----------ccCcEEEE--ecCCceEEEecCCCC
Q psy12426        227 KVRAGSNFEFDINVIGEP-IPTKEWLCNDIT--------I---I-----------SKDRFKIV--NDDKSTKLKVFDSKR  281 (616)
Q Consensus       227 ~v~~g~~~~l~c~~~~~p-~~~~~W~~~~~~--------~---~-----------~~~~~~~~--~~~~~~~l~i~~l~~  281 (616)
                      .+..|++++|.|.+.+.. ...+.|++....        +   .           ...++.+.  .......|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            467899999999987643 457999974321        0   0           01244332  234456799999999


Q ss_pred             CCcEEEEEEEEc
Q psy12426        282 GDSGIYTLAVKN  293 (616)
Q Consensus       282 ~~~g~y~c~a~n  293 (616)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=96.92  E-value=0.003  Score=49.19  Aligned_cols=78  Identities=10%  Similarity=0.024  Sum_probs=47.0

Q ss_pred             CCeEEEEEEEeeec-------CCeeeeeeCC--eeeee-------ccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426         17 GTTLKFDANIIGEP-------VPHVDWRAGG--NPLNL-------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus        17 g~~v~l~C~~~g~P-------~p~v~W~~~~--~~l~~-------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      |+.|+|.|...-.|       .+.|.|.|..  ..+..       .|.+.-     ..+.++++.-..          ..
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~-----~~~y~gRvsl~~----------~~   66 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRV-----AKAFQGRVSLPG----------YP   66 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEE-----chhcccEEEeec----------CC
Confidence            78999999955333       3689999862  21221       222110     122333333211          01


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~  109 (616)
                      ......+|.|.+|+..|.|.|+|......
T Consensus        67 ~~~~~asL~i~nv~~~D~G~Y~C~v~~g~   95 (110)
T cd05902          67 KNRYNASLVLSRLRYSDSGTYRCEVVLGI   95 (110)
T ss_pred             CCCceEEEEECCCCHHHCEEEEEEEEECC
Confidence            12346799999999999999999999644

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.91  E-value=0.0041  Score=48.30  Aligned_cols=66  Identities=18%  Similarity=0.325  Sum_probs=47.1

Q ss_pred             EEcCCeEEEEEEEeeecCceeEEEECCee-------ec---c------------cCcEEEEecCCceEEEecCCCCCCcE
Q psy12426        228 VRAGSNFEFDINVIGEPIPTKEWLCNDIT-------II---S------------KDRFKIVNDDKSTKLKVFDSKRGDSG  285 (616)
Q Consensus       228 v~~g~~~~l~c~~~~~p~~~~~W~~~~~~-------~~---~------------~~~~~~~~~~~~~~l~i~~l~~~~~g  285 (616)
                      +..|++++|.|.........+.|++....       +.   .            ..++..........|.|.+++.+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            56899999999987665567899974321       10   0            12344333445678999999999999


Q ss_pred             EEEEEEEc
Q psy12426        286 IYTLAVKN  293 (616)
Q Consensus       286 ~y~c~a~n  293 (616)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.91  E-value=0.0029  Score=49.13  Aligned_cols=87  Identities=8%  Similarity=0.036  Sum_probs=46.9

Q ss_pred             EecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCcc-ceeeccccCCCCCceEec
Q psy12426         13 KLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHP-IWEKCAQTEGDTPKGKVL   91 (616)
Q Consensus        13 ~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p-~w~~~~~~~~~~~~l~i~   91 (616)
                      .|.+|++|+|.|...+.-...+.|||....=  .+...+.+......   ..........+ .+...  .......|+|.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~--~~~~~~l~~~~~~~---~~~~~~~~~~~~rf~~~--~~~~~~~L~I~   74 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGS--APQPTFLVYLSGSS---KITWDEEELSSKRFSGS--RSSNSFVLTLK   74 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCC--CCCCEEEEEEeCCC---CeeeccccCCCceEEEE--ecCCEEEEEEC
Confidence            4789999999999765545569999965210  01112222111000   00000000000 01000  01234579999


Q ss_pred             CcccCCeEEEEEEEE
Q psy12426         92 DLIEGNQYEFRVLAV  106 (616)
Q Consensus        92 ~l~~~~~~~y~c~a~  106 (616)
                      ++++.|+|.|.|...
T Consensus        75 ~~~~sDsgtY~Ca~~   89 (104)
T cd05720          75 NFQKENEGYYFCSVA   89 (104)
T ss_pred             CCCHHHCEEEEEEEc
Confidence            999999999999876

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.89  E-value=0.015  Score=44.29  Aligned_cols=36  Identities=17%  Similarity=0.282  Sum_probs=30.6

Q ss_pred             ceEEEecCCCCCCcEEEEEEEEc-CCCCceeeEEEEE
Q psy12426        271 STKLKVFDSKRGDSGIYTLAVKN-SWGTDKGTAKVTV  306 (616)
Q Consensus       271 ~~~l~i~~l~~~~~g~y~c~a~n-~~g~~~~~~~l~v  306 (616)
                      ..+|.|.+++..|.|.|+|.+.+ ..|..+....|+|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            46999999999999999999999 6777677766665

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=96.86  E-value=0.012  Score=42.63  Aligned_cols=62  Identities=15%  Similarity=0.203  Sum_probs=41.1

Q ss_pred             EEEEEEEeee-cCceeEEEECCeeecccCcEEEEecC---CceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        234 FEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       234 ~~l~c~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      +.|.|.+.|. |.+.|+|++++..+............   ..+.|.|..-..+|.-.|+|.|.|..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence            5789999866 77799999999988654221111111   23466665555456669999999854

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd00098 IgC Immunoglobulin Constant domain

Probab=96.85  E-value=0.0052  Score=46.91  Aligned_cols=68  Identities=25%  Similarity=0.213  Sum_probs=46.2

Q ss_pred             EcCCeEEEEEEEeee-c-CceeEEEECCeeecccCc-EEEEe--cCC---ceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        229 RAGSNFEFDINVIGE-P-IPTKEWLCNDITIISKDR-FKIVN--DDK---STKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       229 ~~g~~~~l~c~~~~~-p-~~~~~W~~~~~~~~~~~~-~~~~~--~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      ..|..+.|.|.+.+. | .+.+.|++++..+..... .....  ++.   .+.|.+......+.+.|+|.+.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            357899999999998 5 368999999988765432 11211  111   13455555555589999999988643

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.85  E-value=0.0041  Score=47.81  Aligned_cols=77  Identities=10%  Similarity=0.049  Sum_probs=43.6

Q ss_pred             CeEEEEEEEeeec---CCeeeeeeCCeeeeeccceEEEeecC---CCCCceeEeeeccCCccceeeccccCCCCCceEec
Q psy12426         18 TTLKFDANIIGEP---VPHVDWRAGGNPLNLRPIWEKCAQTE---GDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVL   91 (616)
Q Consensus        18 ~~v~l~C~~~g~P---~p~v~W~~~~~~l~~~G~Y~C~a~n~---~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~   91 (616)
                      ++|+|.|...+.+   ...|.|+|....-. .-.+.......   .....+++.-.          .  ......+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~-~~i~~~~~~~~~~~~~~~~~R~~~~----------~--~~~~~~sL~I~   67 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSK-QNIAVFHPQYGISIPPSYEGRVSFL----------N--SSLEDATISIS   67 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCC-EEEEEEecCCCcccCcCcCceEEEe----------C--CCCCceEEEEc
Confidence            5799999977654   44799999764200 00011110000   00011222110          0  01146789999


Q ss_pred             CcccCCeEEEEEEEEc
Q psy12426         92 DLIEGNQYEFRVLAVN  107 (616)
Q Consensus        92 ~l~~~~~~~y~c~a~n  107 (616)
                      +++..|+|.|.|.+.+
T Consensus        68 ~v~~~D~G~Y~C~v~~   83 (98)
T cd05718          68 NLRLEDEGNYICEFAT   83 (98)
T ss_pred             cCCcccCEEEEEEEEe
Confidence            9999999999999874

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi

Probab=96.84  E-value=0.4  Score=44.42  Aligned_cols=114  Identities=20%  Similarity=0.261  Sum_probs=66.7

Q ss_pred             eEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE-E------ecCCCCCCCCcccee----ecCCeEEEEEeCCCCCCCC
Q psy12426        272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT-V------LDIPSPPEGPLKPSN----ITKSSCNLEWRAPRDDGGT  340 (616)
Q Consensus       272 ~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~-v------~~~p~~p~~~~~~~~----~~~~~~~l~W~~~~~~~~~  340 (616)
                      ..+.+.++.+...|..++.+.|.... .....+. .      ...|..|.+ ..+..    .+-++++|.|.+..+.   
T Consensus       128 ~~f~l~~~~~g~~Yliri~~~~~~e~-~~~~kV~aast~~~~~~~P~LP~d-~~Ik~f~~lrtC~SvTIAW~~s~d~---  202 (300)
T PF10179_consen  128 RHFRLSGVKPGERYLIRIQISNSDEG-PSTFKVQAASTNPSKQPYPQLPDD-TSIKEFNKLRTCNSVTIAWLGSPDR---  202 (300)
T ss_pred             EEEEECCCCCCCeEEEEEEccCCCCC-ceEEEEEEecCCcccCCCCCCCCC-CceeEEcCCcccceEEEEEecCCCC---
Confidence            47889999999999888877764332 2223333 2      123445555 33332    3347899999964432   


Q ss_pred             ceEEEEEEEEeCCCC----------------------CEEEcc--cc------c---cceEEeccccCCCeEEEEEEEEe
Q psy12426        341 DILHYVVEKMDMETG----------------------RWVPMG--DV------S---GTYTRAENLIEGHDYNFRVKAVN  387 (616)
Q Consensus       341 ~i~~y~v~~~~~~~~----------------------~~~~~~--~~------~---~~~~~i~~L~~~~~y~~~v~a~n  387 (616)
                      . ..|.|..+.....                      ++..+.  ..      .   -...+|.+|.||+.|.|.|.+.-
T Consensus       203 ~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~  281 (300)
T PF10179_consen  203 S-IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNG  281 (300)
T ss_pred             C-ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEec
Confidence            2 4566655432211                      112221  00      1   12357899999999999999875


Q ss_pred             cCcC
Q psy12426        388 KIGE  391 (616)
Q Consensus       388 ~~g~  391 (616)
                      ..|.
T Consensus       282 ~~G~  285 (300)
T PF10179_consen  282 PSGQ  285 (300)
T ss_pred             CCCc
Confidence            5554

The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.83  E-value=0.007  Score=46.63  Aligned_cols=83  Identities=4%  Similarity=-0.078  Sum_probs=51.7

Q ss_pred             CCCceEecCCCeEEEEEEEeeecCC---eeeeeeCCee-eeeccceEEEeecCCCC----CceeEeeeccCCccceeecc
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEPVP---HVDWRAGGNP-LNLRPIWEKCAQTEGDT----PKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P~p---~v~W~~~~~~-l~~~G~Y~C~a~n~~~~----~~~~v~~~~~~~~p~w~~~~   79 (616)
                      .+....+..|+.|+|+|.++|.-..   .++|+|...- +.     -|-..+..+.    .+++.+.           .+
T Consensus         4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE-----~c~~~~~~g~~~~~~~~r~tc-----------s~   67 (115)
T cd05721           4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVE-----VCAVTGNMSNQLQTSLDGFNC-----------DG   67 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcE-----EEEEEeCCCccccccCCCeEE-----------eE
Confidence            4677889999999999999875554   4889986432 21     1222111111    0111110           01


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....+.-.|.+.+|+..|...|.|.-.
T Consensus        68 ~~s~ntv~L~l~~L~a~DTa~Y~Ca~e   94 (115)
T cd05721          68 TLGNEQVNFTLQNLRANQTDIYFCKIE   94 (115)
T ss_pred             eCCCCEEEEEEcCCCHHHCeEEEEEee
Confidence            113345689999999999999999864

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.81  E-value=0.018  Score=42.37  Aligned_cols=62  Identities=13%  Similarity=0.208  Sum_probs=41.3

Q ss_pred             EEEEEEEeee-cCceeEEEECCeeecccCcEEEEecCCc------eEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        234 FEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKS------TKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       234 ~~l~c~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      +.|.|.+.+. |.+.|+|++++..+..... .+...+..      +.|.+......+...|+|.+.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            5789999876 8889999999988764432 22222221      2344444445566799999988643

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=96.79  E-value=0.0045  Score=47.40  Aligned_cols=25  Identities=0%  Similarity=0.013  Sum_probs=21.9

Q ss_pred             CCCCceEecCcccCCeEEEEEEEEc
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ....+|+|.+++..|+|.|.|....
T Consensus        58 ~~~~sL~I~nv~~~D~G~Y~C~~~~   82 (97)
T cd05846          58 LNSTSITIWNVTLEDEGCYKCIFNT   82 (97)
T ss_pred             CCccEEEEeCCceeeeEEEEEEEEe
Confidence            3467899999999999999999763

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.77  E-value=0.017  Score=41.94  Aligned_cols=64  Identities=17%  Similarity=0.282  Sum_probs=46.7

Q ss_pred             ceEEEcCCeEEEEEEEeeecCc--eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +..+..|++++|.|.....+.|  .++|...+....      .....+..+|.+..+...|+|.++|.+...
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK------QILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc------eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            3457789999999999664444  999987554311      111233458999999999999999999754

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.74  E-value=0.0012  Score=44.57  Aligned_cols=38  Identities=16%  Similarity=0.367  Sum_probs=28.1

Q ss_pred             cCCCeEEEEEEEeeecCCeeeeeeCCeeee-------------eccceEEEeec
Q psy12426         15 SAGTTLKFDANIIGEPVPHVDWRAGGNPLN-------------LRPIWEKCAQT   55 (616)
Q Consensus        15 ~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~-------------~~G~Y~C~a~n   55 (616)
                      ..|.+|+|+|...+.   .|+|+++++.+.             .+|.|+|.+.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~~~~~~~~~e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDEKYLSLNHFSSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCCceEEeeccCCCCceEEEEeCC
Confidence            458999999964322   299999975543             19999999855

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.73  E-value=0.0071  Score=45.65  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=23.9

Q ss_pred             cCCCeEEEEEEEee-ecC-CeeeeeeCCeeee
Q psy12426         15 SAGTTLKFDANIIG-EPV-PHVDWRAGGNPLN   44 (616)
Q Consensus        15 ~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~l~   44 (616)
                      ..++.++|.|.|.| .|. ..|+|+|||+.+.
T Consensus        12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~   43 (94)
T cd05847          12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVAT   43 (94)
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECc
Confidence            35577999999998 565 4689999998864

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=96.70  E-value=0.014  Score=42.92  Aligned_cols=64  Identities=16%  Similarity=0.184  Sum_probs=39.6

Q ss_pred             EEEEEEEeee-cCceeEEEECCeeecccCcEEEEecCC----ceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        234 FEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDK----STKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       234 ~~l~c~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      +.|.|.+.+. |.+.+.|++++..+...........+.    .+.|.+..-..++...|+|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            5789999775 888999999998875332111111111    123444333334557999999986543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>TIGR00864 PCC polycystin cation channel protein

Probab=96.65  E-value=2.6  Score=51.10  Aligned_cols=189  Identities=11%  Similarity=-0.049  Sum_probs=99.4

Q ss_pred             EecCcccCCeEEEEEEEEcCCCCCCCCCCCCcce-------------eecCCCceee--eecCcccccEEEEeeccCccc
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI-------------ARAKKGKCYH--LVGTLLKDSIYEQLKRSGLFD  153 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~-------------~~~~~p~~~~--~~g~p~~~~~~~~~~~~~~~~  153 (616)
                      .+.-..+ ..|.++..|.|..|....+.......             +....+..+.  ..++....|+|..  .+|   
T Consensus      1663 ~vt~~~p-G~Y~VtL~aSN~vG~~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~--gdG--- 1736 (2740)
T TIGR00864      1663 KLNPLEA-GPCDIFLQAANLLGQATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFL--EEG--- 1736 (2740)
T ss_pred             EEecCCC-ceEEEEEEEeecccceeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEE--CCC---
Confidence            3333334 47888999999999876552111110             0001112222  1255566788888  422   


Q ss_pred             ccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcc-eEEEcCC
Q psy12426        154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSD-IKVRAGS  232 (616)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~-~~v~~g~  232 (616)
                           ..|...    .   ...-........|.+++.|.|..|....   ...+.+........|....+.. ..+..|.
T Consensus      1737 -----~s~~~s----~---p~~tHtf~~~G~y~VtVta~N~vss~~~---s~~V~VqepV~GL~i~~~~~~~~~~~~ag~ 1801 (2740)
T TIGR00864      1737 -----DDLETS----E---PFMSHSFPSAGLHLVTMKAFNELGSANA---SEEVDVQEPISGLKIRAADAGEQNFFAADS 1801 (2740)
T ss_pred             -----CCcccC----C---CceEEEccCCceEEEEEEEEccccccce---eEEEEEEeccccceEecCCCCcccceecCc
Confidence                 112110    1   1112223345667888899999886543   2345544444444443222222 2456677


Q ss_pred             eEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy12426        233 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP  310 (616)
Q Consensus       233 ~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p  310 (616)
                      .+.|.-.++......+.|..++..-..+.         ...++....   -.|.+++.|.|..+....+..+.++++.
T Consensus      1802 ~v~F~a~vstGsnVsw~W~f~~g~s~~gk---------~v~~Tf~~a---G~ytV~L~AsN~vs~~~~s~~~~VQe~I 1867 (2740)
T TIGR00864      1802 SVCFQGELATGTNVSWCWAIDGGSSKMGK---------HACMTFPDA---GTFAIRLNASNAVSGKSASREFFAEEPI 1867 (2740)
T ss_pred             EEEEEEEccCCCeeEEEEEeCCCCccccc---------eeEEecCCC---eEEEEEEEEEcccCcceeeeeEEEEEec
Confidence            77777665555556788887654311111         112222211   2345567888988888888888887654

Note: this model has been restricted to the amino half because for technical reasons.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.64  E-value=0.0079  Score=45.18  Aligned_cols=39  Identities=15%  Similarity=0.323  Sum_probs=31.1

Q ss_pred             CccCCCCCCceEecCCCeEEE-EEE-EeeecCCeeeeeeCC
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKF-DAN-IIGEPVPHVDWRAGG   40 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l-~C~-~~g~P~p~v~W~~~~   40 (616)
                      |+..+.+-....+.+|+.+.+ .|. +.|.|+++|+|+.+.
T Consensus         1 p~~~~~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~   41 (97)
T cd07704           1 PLVSLSPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNV   41 (97)
T ss_pred             CccccCCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCC
Confidence            444445455677889999999 998 789999999999874

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.63  E-value=0.0072  Score=44.64  Aligned_cols=30  Identities=20%  Similarity=0.469  Sum_probs=24.3

Q ss_pred             cCCCeEEEEEEEee-ecCC-eeeeeeCCeeee
Q psy12426         15 SAGTTLKFDANIIG-EPVP-HVDWRAGGNPLN   44 (616)
Q Consensus        15 ~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~l~   44 (616)
                      ..++.+.|.|.|.| .|.. .|+|+++|+.+.
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~   37 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVT   37 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEET
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceee
Confidence            34899999999998 5544 599999999765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.61  E-value=0.0077  Score=45.21  Aligned_cols=31  Identities=13%  Similarity=0.247  Sum_probs=24.3

Q ss_pred             ecCCCeEEEEEEEee-ecC-CeeeeeeCCeeee
Q psy12426         14 LSAGTTLKFDANIIG-EPV-PHVDWRAGGNPLN   44 (616)
Q Consensus        14 v~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~l~   44 (616)
                      +..|+..+|.|.|.| .|. ..|+|.|||+.+.
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~   44 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP   44 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence            345778899999999 554 3589999999864

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=96.58  E-value=0.016  Score=42.54  Aligned_cols=62  Identities=18%  Similarity=0.259  Sum_probs=40.2

Q ss_pred             EEEEEEEee-ecCceeEEEECCeeecccCcEEEEecCC-----ceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        234 FEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       234 ~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      +.|.|.+.+ .|.+.++|++++..+............+     .+.|.+..-...+...|+|.+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            578999987 5778999999999875433222222111     2345555444556678999998753

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>PHA03376 BARF1; Provisional

Probab=96.58  E-value=0.018  Score=48.05  Aligned_cols=74  Identities=15%  Similarity=0.092  Sum_probs=51.9

Q ss_pred             ceEEEcCCeEEEEEEEe---eecCceeEEEECC----eeec-------------ccCcEEEEecCCceEEEecCCCCCCc
Q psy12426        225 DIKVRAGSNFEFDINVI---GEPIPTKEWLCND----ITII-------------SKDRFKIVNDDKSTKLKVFDSKRGDS  284 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~---~~p~~~~~W~~~~----~~~~-------------~~~~~~~~~~~~~~~l~i~~l~~~~~  284 (616)
                      .+....|+.+.|+|...   .....+++|+|.+    ..+.             ...++.+....+..+|.|.++...|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            35567899999999876   2245589999942    2211             11334444456778999999999999


Q ss_pred             EEEEEEEEcCCCCc
Q psy12426        285 GIYTLAVKNSWGTD  298 (616)
Q Consensus       285 g~y~c~a~n~~g~~  298 (616)
                      |.|+|.........
T Consensus       100 GtY~C~fQkge~~~  113 (221)
T PHA03376        100 GNYLCRMKLGETEV  113 (221)
T ss_pred             ceEEEEEEcCCCce
Confidence            99999998754333

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.56  E-value=0.0088  Score=45.06  Aligned_cols=30  Identities=20%  Similarity=0.318  Sum_probs=24.1

Q ss_pred             cCCCeEEEEEEEee-ecC-CeeeeeeCCeeee
Q psy12426         15 SAGTTLKFDANIIG-EPV-PHVDWRAGGNPLN   44 (616)
Q Consensus        15 ~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~l~   44 (616)
                      ..|+.++|.|.|.| .|. ..|+|.|||+.+.
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~   44 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVT   44 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeEcc
Confidence            44677899999999 664 4589999999875

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=96.54  E-value=0.015  Score=44.70  Aligned_cols=27  Identities=4%  Similarity=0.175  Sum_probs=23.4

Q ss_pred             CCCceEecCcccCCeEEEEEEEEc-CCC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVN-KGG  110 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n-~~g  110 (616)
                      ...+|.|.+++..|+|.|.|...+ ..|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g   89 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAG   89 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCC
Confidence            467899999999999999999987 444

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.53  E-value=0.0099  Score=44.90  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=27.9

Q ss_pred             CCCceEecCCCeEEEEEEEee-ecC-CeeeeeeCCeeee
Q psy12426          8 HLGDIKLSAGTTLKFDANIIG-EPV-PHVDWRAGGNPLN   44 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~l~   44 (616)
                      .|....+..+..++|.|.|.| .|. ..|+|.|||+.+.
T Consensus         7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~   45 (96)
T cd07697           7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI   45 (96)
T ss_pred             CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence            455555556788999999998 554 3589999999865

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=96.50  E-value=0.013  Score=45.70  Aligned_cols=83  Identities=20%  Similarity=0.232  Sum_probs=56.5

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeE-eecCCccEEEcCCCC--CCCeEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKAC-IVPANITATSVPDLK--EGEEYEFRV  483 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~-~~~~~~~~~~l~~L~--p~t~Y~~~v  483 (616)
                      ....+|.++++...+ -...|.|+++..  ...-..|.|+|+..++ .|.... -.......+.|++..  +...|.+||
T Consensus        20 ~~lp~P~nv~~~s~n-f~~iL~W~~~~~--~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV   96 (107)
T PF01108_consen   20 ASLPAPQNVTVDSVN-FKHILRWDPGPG--SPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARV   96 (107)
T ss_dssp             SSGSSCEEEEEEEET-TEEEEEEEESTT--SSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred             ccCCCCCeeEEEEEC-CceEEEeCCCCC--CCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence            345678888888764 458999997433  2245679999994443 888761 122235677777644  788999999


Q ss_pred             EEEcCCCCCC
Q psy12426        484 IAVNKGGPGE  493 (616)
Q Consensus       484 ~a~n~~G~g~  493 (616)
                      +|..+...|+
T Consensus        97 ~A~~~~~~S~  106 (107)
T PF01108_consen   97 RAEVGNQTSD  106 (107)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEeCCccCC
Confidence            9987765443

...

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.45  E-value=0.0093  Score=45.22  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=26.9

Q ss_pred             CCCceEecCCCeEEEEEEEeee--cC-CeeeeeeCCee
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGE--PV-PHVDWRAGGNP   42 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~--P~-p~v~W~~~~~~   42 (616)
                      +|....+..|+.++|.|.+.|.  |. ..|+|.||++.
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~   42 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE   42 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence            4555557779999999999998  44 35899999753

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=96.45  E-value=0.017  Score=45.12  Aligned_cols=30  Identities=7%  Similarity=0.037  Sum_probs=25.3

Q ss_pred             CCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      ...+|.|.+|+..|.|.|+|...+.....+
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~  106 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQ  106 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccE
Confidence            467999999999999999999987665443

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=96.39  E-value=0.02  Score=45.56  Aligned_cols=70  Identities=20%  Similarity=0.255  Sum_probs=48.3

Q ss_pred             cceEEEcCCeEEEEEEEeeec--CceeEEEECC--ee---e---c-----------ccCcEEEEecC--CceEEEecCCC
Q psy12426        224 SDIKVRAGSNFEFDINVIGEP--IPTKEWLCND--IT---I---I-----------SKDRFKIVNDD--KSTKLKVFDSK  280 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p--~~~~~W~~~~--~~---~---~-----------~~~~~~~~~~~--~~~~l~i~~l~  280 (616)
                      ....+..|++++|.|...+..  ...+.|++-.  ..   +   .           ...++......  ....|.|.+++
T Consensus         5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   84 (117)
T cd04981           5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLT   84 (117)
T ss_pred             CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCC
Confidence            456788999999999876543  4568898732  11   1   0           01344444332  33579999999


Q ss_pred             CCCcEEEEEEEEc
Q psy12426        281 RGDSGIYTLAVKN  293 (616)
Q Consensus       281 ~~~~g~y~c~a~n  293 (616)
                      .+|++.|.|.+..
T Consensus        85 ~~Dsa~YyCa~~~   97 (117)
T cd04981          85 PEDTAVYYCARGL   97 (117)
T ss_pred             HHHCEEEEEEEEc
Confidence            9999999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd00096 Ig Immunoglobulin domain

Probab=96.38  E-value=0.016  Score=40.87  Aligned_cols=61  Identities=28%  Similarity=0.293  Sum_probs=44.8

Q ss_pred             EEEEEEeeecCceeEEEECCeeecccCcE----EEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        235 EFDINVIGEPIPTKEWLCNDITIISKDRF----KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       235 ~l~c~~~~~p~~~~~W~~~~~~~~~~~~~----~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      .|.|.+.+.+...+.|.+.+.........    ..........|.|.++...|.|.|.|.+.+..
T Consensus         2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            58899998778899999988765432211    11122335689999999999999999998764

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.34  E-value=0.007  Score=45.76  Aligned_cols=42  Identities=17%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEee-e-cC-CeeeeeeCCee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIG-E-PV-PHVDWRAGGNP   42 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~-P~-p~v~W~~~~~~   42 (616)
                      +|.+..-+|....+..++.++|.|.+.| . |. -.|+|.++|+.
T Consensus         3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986           3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            3666555566565667899999999998 4 53 46999999874

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.30  E-value=0.021  Score=43.30  Aligned_cols=70  Identities=14%  Similarity=0.151  Sum_probs=45.4

Q ss_pred             EEEcCCeEEEEEEEeee-cCce--eEEEECCeeecccCcEEE--EecCCceEEEecCCCCCCcE-EEEEEEEcCCCC
Q psy12426        227 KVRAGSNFEFDINVIGE-PIPT--KEWLCNDITIISKDRFKI--VNDDKSTKLKVFDSKRGDSG-IYTLAVKNSWGT  297 (616)
Q Consensus       227 ~v~~g~~~~l~c~~~~~-p~~~--~~W~~~~~~~~~~~~~~~--~~~~~~~~l~i~~l~~~~~g-~y~c~a~n~~g~  297 (616)
                      .+.+|+.++|.|.+.+. |.+.  +.|++++..+........  .......++.+. ..+.|.| .|+|.|.+..+.
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP   87 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence            35789999999999875 5555  799999988854211110  001122356555 4455555 999999986553

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>smart00406 IGv Immunoglobulin V-Type

Probab=96.25  E-value=0.011  Score=43.48  Aligned_cols=22  Identities=5%  Similarity=-0.037  Sum_probs=19.2

Q ss_pred             CCCCceEecCcccCCeEEEEEE
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVL  104 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~  104 (616)
                      ....+|.|.+++++|+|.|.|.
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       59 KNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEc
Confidence            3456899999999999999996

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.20  E-value=0.0057  Score=41.66  Aligned_cols=35  Identities=14%  Similarity=0.278  Sum_probs=25.0

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCCeee-------e-------eccceEEEeec
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGGNPL-------N-------LRPIWEKCAQT   55 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~~~l-------~-------~~G~Y~C~a~n   55 (616)
                      ...|.|+|.+    ...|+|+++....       .       ..|.|+|.+++
T Consensus         6 ~~~V~L~C~~----~tsi~W~kG~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKKGKEILEVSNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEecCcccccccccEEeccCcccCCCcceEecCcc
Confidence            3589999965    2469999944211       1       19999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=96.19  E-value=0.011  Score=46.15  Aligned_cols=69  Identities=23%  Similarity=0.306  Sum_probs=46.9

Q ss_pred             CEEEEecCCeEEEEecCCCCC---CCC--------cceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        416 PTVTDWGKDHVDLEWTPPKKD---GGS--------PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       416 ~~~~~~~~~~v~l~W~~p~~~---~~~--------~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      +.+ ....+.+.|.+.+|...   ++.        .-..|.|.|++.++. ............+.|.+|.|++.|-|+|+
T Consensus         8 v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~-~~~~~~~~~~~~~~l~~L~p~t~YCv~V~   85 (106)
T PF09294_consen    8 VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN-EKKKEIETKNSSVTLSDLKPGTNYCVSVQ   85 (106)
T ss_dssp             EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS-CEEEEEESSSEEEEEES--TTSEEEEEEE
T ss_pred             EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc-cceEEEeecCCEEEEeCCCCCCCEEEEEE
Confidence            666 56788999999987510   111        124699999888764 23334445577889999999999999999


Q ss_pred             EE
Q psy12426        485 AV  486 (616)
Q Consensus       485 a~  486 (616)
                      |.
T Consensus        86 ~~   87 (106)
T PF09294_consen   86 AF   87 (106)
T ss_dssp             EE
T ss_pred             EE
Confidence            93

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.17  E-value=0.019  Score=43.41  Aligned_cols=37  Identities=16%  Similarity=0.335  Sum_probs=25.5

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEE-eeecCCeeeeeeC
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANI-IGEPVPHVDWRAG   39 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~   39 (616)
                      |+...+ +.....-..+...+.|.+ .|+|.+.|+|+++
T Consensus         1 p~~~~~-~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~   38 (95)
T cd05719           1 PKNSAE-AGPVALGGEPVTVATCVSANGKPPATISWETT   38 (95)
T ss_pred             CCcccc-eeccccCCCccEEEEEECCCCcCCCEEEEEeC
Confidence            444433 223333334778899995 7999999999997

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd00096 Ig Immunoglobulin domain

Probab=96.08  E-value=0.021  Score=40.22  Aligned_cols=66  Identities=15%  Similarity=0.306  Sum_probs=44.4

Q ss_pred             EEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCcccCCeE
Q psy12426         20 LKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQY   99 (616)
Q Consensus        20 v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~   99 (616)
                      +.|.|.+.+.+.+.+.|++++........ . ...                      ...........+.|.++...+.|
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~-~~~----------------------~~~~~~~~~~~l~i~~~~~~d~g   56 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVL-T-RVR----------------------SSRGTSSGSSTLTISNVTLEDSG   56 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCccc-E-Eec----------------------cccCcceeEEEEEECccCcccCc
Confidence            57999998888889999999875542111 0 000                      00000222457889999999999


Q ss_pred             EEEEEEEcCC
Q psy12426        100 EFRVLAVNKG  109 (616)
Q Consensus       100 ~y~c~a~n~~  109 (616)
                      .|.|.+.+..
T Consensus        57 ~y~C~~~~~~   66 (74)
T cd00096          57 TYTCVASNSA   66 (74)
T ss_pred             EEEEEEecCc
Confidence            9999998655

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.03  E-value=0.038  Score=42.18  Aligned_cols=28  Identities=7%  Similarity=-0.119  Sum_probs=24.4

Q ss_pred             CCCCceEecCcccCCeEEEEEEEEc-CCC
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAVN-KGG  110 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~n-~~g  110 (616)
                      ..+.+|.|.+|+..|+|.|.|...| ..|
T Consensus        60 ~~daSi~i~nl~~~D~G~Y~C~v~t~P~g   88 (99)
T cd05886          60 FEDGTISLSRLELEDEGVYICEFATFPTG   88 (99)
T ss_pred             CCcceEEEcCCccccCEEEEEEEEeCCCC
Confidence            3568999999999999999999998 454

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=96.00  E-value=0.095  Score=39.64  Aligned_cols=70  Identities=13%  Similarity=0.220  Sum_probs=43.5

Q ss_pred             eEEEEEEEeee-cCceeEEEECCe----ee-----------cc--cCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        233 NFEFDINVIGE-PIPTKEWLCNDI----TI-----------IS--KDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       233 ~~~l~c~~~~~-p~~~~~W~~~~~----~~-----------~~--~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .++|.|..... ....+.|.+...    .+           ..  ..|..... .....++.|.++..+|.|.|+|....
T Consensus         2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t   81 (96)
T cd05889           2 KMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVT   81 (96)
T ss_pred             CEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEEe
Confidence            56788887643 344778887432    11           00  12333321 12356999999999999999999987


Q ss_pred             -CCCCceeeE
Q psy12426        294 -SWGTDKGTA  302 (616)
Q Consensus       294 -~~g~~~~~~  302 (616)
                       ..|...+..
T Consensus        82 ~P~g~~~~~i   91 (96)
T cd05889          82 YPQGSWEKVI   91 (96)
T ss_pred             CCCCCeEEEE
Confidence             455554443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=95.95  E-value=0.03  Score=42.22  Aligned_cols=30  Identities=20%  Similarity=0.407  Sum_probs=24.0

Q ss_pred             CceEecCC--CeEEEEEE-EeeecCCeeeeeeC
Q psy12426         10 GDIKLSAG--TTLKFDAN-IIGEPVPHVDWRAG   39 (616)
Q Consensus        10 ~~~~v~~g--~~v~l~C~-~~g~P~p~v~W~~~   39 (616)
                      +.+.|..|  ..+.++|. +.|.|++.|+|+++
T Consensus         6 ~~~~~~~~~~~~~va~C~s~~gkPaa~IsW~~~   38 (95)
T cd07703           6 EAVEVSAGTIPVPVAKCVSANGRPPARISWSST   38 (95)
T ss_pred             eEEEeecCCCccEEEEEEcCCCCCCcEEEEEcC
Confidence            34555556  67899998 66899999999998

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=95.92  E-value=0.039  Score=41.71  Aligned_cols=77  Identities=13%  Similarity=0.088  Sum_probs=44.0

Q ss_pred             CeEEEEEEEe-eecCCeeeeeeCCeeeeeccceEEEeecC---CCCCceeEeeeccCCccceeeccccCCCCCceEecCc
Q psy12426         18 TTLKFDANII-GEPVPHVDWRAGGNPLNLRPIWEKCAQTE---GDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDL   93 (616)
Q Consensus        18 ~~v~l~C~~~-g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~---~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l   93 (616)
                      +.++|.|... ....++|+|.|-... ...-.+.|.-...   .+.-+++|.-.         .   ....+.+|.|.+|
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~-~~~~iavy~~~~g~~~~~~y~~Rv~f~---------~---~~~~d~sI~i~nv   67 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGS-HKENIAVYHPIYGMHIEDKYRGRVYFL---------N---STREDMSLSFNNA   67 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCC-CCceEEEEECCCCCEECccccCeEEEe---------c---CCCCccEEEEcCC
Confidence            4689999853 234567999986431 0012233321100   00112233311         0   0124689999999


Q ss_pred             ccCCeEEEEEEEEc
Q psy12426         94 IEGNQYEFRVLAVN  107 (616)
Q Consensus        94 ~~~~~~~y~c~a~n  107 (616)
                      +..|+|.|.|...+
T Consensus        68 t~~D~G~Y~C~~~t   81 (96)
T cd05889          68 TEEDVGLYCCSLVT   81 (96)
T ss_pred             CcccCEEEEEEEEe
Confidence            99999999999874

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=95.71  E-value=0.17  Score=39.62  Aligned_cols=66  Identities=20%  Similarity=0.316  Sum_probs=39.2

Q ss_pred             EEEcCCeEEEEEEEeee-cC-ceeEEEECCeeecccCcEEEEecCC------ceEEEecCCCCCCcE-EEEEEEEcC
Q psy12426        227 KVRAGSNFEFDINVIGE-PI-PTKEWLCNDITIISKDRFKIVNDDK------STKLKVFDSKRGDSG-IYTLAVKNS  294 (616)
Q Consensus       227 ~v~~g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~~~~~~~~~~~~------~~~l~i~~l~~~~~g-~y~c~a~n~  294 (616)
                      ....|+.++|.|.+.+- |. ..++|++||..+..... .....++      .+.|.+. ....|.+ .|+|.+...
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~   91 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHR   91 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeC
Confidence            34467789999999885 43 58999999998754321 1111111      1223333 2333433 488988764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=95.69  E-value=0.089  Score=39.79  Aligned_cols=64  Identities=14%  Similarity=0.203  Sum_probs=37.1

Q ss_pred             CCeEEEEEEEeee-cCc-eeEEEECCeeecccC---cEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        231 GSNFEFDINVIGE-PIP-TKEWLCNDITIISKD---RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       231 g~~~~l~c~~~~~-p~~-~~~W~~~~~~~~~~~---~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      ++.+.|.|.+.|- |.. .+.|.+++..+....   ......++.-.......+...+...|+|.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~   82 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHS   82 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeC
Confidence            6689999999995 543 899999986432221   111111111111222333344678899998764

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>smart00406 IGv Immunoglobulin V-Type

Probab=95.65  E-value=0.048  Score=39.88  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=37.6

Q ss_pred             EEEEEEEeeecCc--eeEEEECCe--e---ec-------------ccCcEEEEec--CCceEEEecCCCCCCcEEEEEE
Q psy12426        234 FEFDINVIGEPIP--TKEWLCNDI--T---II-------------SKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       234 ~~l~c~~~~~p~~--~~~W~~~~~--~---~~-------------~~~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~  290 (616)
                      +.|.|.+......  .+.|++...  .   +.             ...|+.+...  ....+|.|.+++.+|+|.|.|.
T Consensus         2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            5678877765543  678877431  0   10             1234444433  4567899999999999999996

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=95.61  E-value=0.038  Score=41.75  Aligned_cols=29  Identities=10%  Similarity=-0.191  Sum_probs=23.6

Q ss_pred             CCCCceEecCcccCCeEEEEEEEEc-CCCC
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAVN-KGGP  111 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~n-~~g~  111 (616)
                      ..+.+|.|.+|+..|.|.|+|...+ ..|.
T Consensus        57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~   86 (96)
T cd05887          57 LLDATIMLENVGFSDIGVYICKAVTFPLGN   86 (96)
T ss_pred             CCccEEEEeCCCccccEEEEEEEEeCCCCC
Confidence            3468999999999999999999764 3443

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=95.60  E-value=0.056  Score=39.30  Aligned_cols=62  Identities=18%  Similarity=0.246  Sum_probs=44.0

Q ss_pred             ceEecCCCeEEEEEEEee--ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426         11 DIKLSAGTTLKFDANIIG--EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g--~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      +-.+..|++++|+|.+..  .|.+.|+|.--+....       ..                           .......|
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-------~~---------------------------~~~~~ktL   53 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-------QI---------------------------LNQDKKTL   53 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-------ee---------------------------ccCCccEE
Confidence            446889999999999754  4455999987655322       00                           01224577


Q ss_pred             EecCcccCCeEEEEEEEE
Q psy12426         89 KVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~  106 (616)
                      .+..|...|+|...|...
T Consensus        54 ~~~qv~~qdSG~WtC~V~   71 (88)
T cd07694          54 NLVQLGPNDSGTWDCIVS   71 (88)
T ss_pred             EeceeCcccCCEEEEEEE
Confidence            788888999999999886

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=95.45  E-value=0.039  Score=37.46  Aligned_cols=51  Identities=22%  Similarity=0.341  Sum_probs=35.1

Q ss_pred             EcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        229 RAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       229 ~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      ..|.+|+|+|.....   .+.|.+++..+....          ..+.+.+-. ++.|.|+|.+.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~----------~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD----------EKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCC----------ceEEeeccC-CCCceEEEEeCC
Confidence            468899999975432   399999986554321          134444555 789999999954

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.40  E-value=0.053  Score=41.02  Aligned_cols=41  Identities=17%  Similarity=0.240  Sum_probs=29.7

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEee-ecC-CeeeeeeCCee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIG-EPV-PHVDWRAGGNP   42 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~P~-p~v~W~~~~~~   42 (616)
                      ||.+++-.+-.-.. .++.++|.|.|.| .|. -.|+|.|||+.
T Consensus         1 ~P~v~~l~~~~~~~-~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985           1 APTVFPLVPCCSSS-SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCeEEEeCCCcccc-CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            56676555544443 4667999999998 554 35899999997

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4367|consensus

Probab=95.21  E-value=0.019  Score=53.89  Aligned_cols=73  Identities=27%  Similarity=0.294  Sum_probs=64.3

Q ss_pred             ecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCc
Q psy12426        322 ITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPL  395 (616)
Q Consensus       322 ~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~  395 (616)
                      ...+++++.|+.|... +.+..+|.++..+.+++++..+.....+-+++.+|--.+.|.-||.+.|..|.++++
T Consensus       450 t~nns~t~~wkqp~~~-~~~~dg~~leld~g~~g~frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys  522 (699)
T KOG4367|consen  450 THNNSATLSWKQPPLS-TVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYS  522 (699)
T ss_pred             ccCCceEEEeecCCCC-CCCCcceEEEeecCCCCceeEEEecCceeEEecceecchhHHHHHHHhhccCCCccc
Confidence            3467899999966553 568899999999988899999988888999999999999999999999999999885

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=94.84  E-value=0.082  Score=40.54  Aligned_cols=31  Identities=13%  Similarity=0.231  Sum_probs=24.3

Q ss_pred             EEcCCeEEEEEEEeee-c-CceeEEEECCeeec
Q psy12426        228 VRAGSNFEFDINVIGE-P-IPTKEWLCNDITII  258 (616)
Q Consensus       228 v~~g~~~~l~c~~~~~-p-~~~~~W~~~~~~~~  258 (616)
                      ...++.+.|.|.+.+- | ...+.|++||..+.
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~   46 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVS   46 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECc
Confidence            3346678999999985 4 45899999999874

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=94.77  E-value=0.26  Score=35.35  Aligned_cols=61  Identities=26%  Similarity=0.229  Sum_probs=36.8

Q ss_pred             EEEEEEEeee-cC-ceeEEEECCeeecccCcE-EEE--ecCC---ceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        234 FEFDINVIGE-PI-PTKEWLCNDITIISKDRF-KIV--NDDK---STKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       234 ~~l~c~~~~~-p~-~~~~W~~~~~~~~~~~~~-~~~--~~~~---~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      ++|.|.+.+- |. ..+.|++++..+..+... ...  .++.   .+.|.|......+...|+|.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            5799999987 43 589999999864332111 111  1111   134455444556667899988653

>KOG4228|consensus

Probab=94.63  E-value=0.16  Score=54.77  Aligned_cols=101  Identities=18%  Similarity=0.023  Sum_probs=58.1

Q ss_pred             EEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcccccc
Q psy12426        286 IYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSG  365 (616)
Q Consensus       286 ~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~  365 (616)
                      .|+|.+....|.+.....+.+..-|..+.. ..++..........|.....    ....|.+.++..... .........
T Consensus         1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~-~~vt~~~~~~~~~~~~~~~t----~~~~y~v~~~~~~s~-~~~~~~~~~   74 (1087)
T KOG4228|consen    1 NYTCLARSGLGPGELITYVRVNGGPPGPST-PNVTGSTATSWVQAELLGST----WPNYYQVIFKALSSG-YGYIDVDLT   74 (1087)
T ss_pred             CeeeeecccCCCccceEEEEecCCCCCCCC-cccccccccceeehhhccCC----ChhhhheeeeEeccC-cceeeccce
Confidence            389999998888888888888776665554 45667777778888874322    345565555433222 111111222


Q ss_pred             ceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426        366 TYTRAENLIEGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       366 ~~~~i~~L~~~~~y~~~v~a~n~~g~~~~  394 (616)
                      ..+....+.+-+-+.+  .+.|..|.+..
T Consensus        75 ~~~s~~~~~~~~~~~~--~evnt~~~a~~  101 (1087)
T KOG4228|consen   75 TRLSYPCLSPPSFLEL--VEVNTIGRAPF  101 (1087)
T ss_pred             eecccCCCCCcchhhh--hhccccccccc
Confidence            2234444444444444  55666665544

>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]

Probab=94.61  E-value=2.6  Score=39.29  Aligned_cols=205  Identities=15%  Similarity=0.075  Sum_probs=107.2

Q ss_pred             EecCCCCCCcEEEEEEEEcCCCCceeeEEEEE-ecCCCCCCC-CccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeC
Q psy12426        275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV-LDIPSPPEG-PLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM  352 (616)
Q Consensus       275 ~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v-~~~p~~p~~-~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~  352 (616)
                      .-.++.....+.|.+.+.+..+..+.++...- .....|+.. .+.+....++.+.|+|..+...     ..|.|...+.
T Consensus       127 i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~~~-----~yy~IY~~~~  201 (343)
T COG3401         127 IDSDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGSEAE-----DYYRIYASDS  201 (343)
T ss_pred             eecccccccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCcccc-----ceEEEeccCC
Confidence            33467777888899998886665544433221 111122221 1333445667889999854332     2677766555


Q ss_pred             CCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecC
Q psy12426        353 ETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTP  432 (616)
Q Consensus       353 ~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~  432 (616)
                      +............+.+.......|..|.|.+.+....|.....  +...++......|..|..+.-. ...+.+.|.|+.
T Consensus       202 g~e~~~~ia~t~~n~y~d~~eglga~~~y~VTtVd~~~~es~l--p~~~t~~~~~g~~e~pt~~g~t-~~~s~i~V~~E~  278 (343)
T COG3401         202 GNEEYGFIAQTTENSYYDVKEGLGAVEYYKVTTVDNTGFESDL--PNEPTVGETGGRYEVPTIPGET-TEASFIGVAAEQ  278 (343)
T ss_pred             ccccccceeeccccchhhhhhccCceeEEEEEEEcCCcceecc--CCccccccccCCcccccCCCce-eeeeeeeEEecc
Confidence            4444333333333344333334477888888888755543221  2222222222222222211111 123445677774


Q ss_pred             CCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCC
Q psy12426        433 PKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE  493 (616)
Q Consensus       433 p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~  493 (616)
                      -...   ....|.++....+..-..   .......+.+..+.++..|.+.|.+++..|.+.
T Consensus       279 ~~~~---~av~ytvyr~~~g~~~~~---f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~  333 (343)
T COG3401         279 NQLR---QAVTYTVYRVEDGTPTKF---FTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS  333 (343)
T ss_pred             cccc---eeeEEeeeeccCCCccee---eeeeeccccchhhccccceeEEEEEeccccccc
Confidence            2111   233455544333221111   111245677778889999999999999998764

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.56  E-value=0.38  Score=35.93  Aligned_cols=66  Identities=14%  Similarity=0.240  Sum_probs=40.6

Q ss_pred             CCeEEEEEEEe-eecCceeEEEECCeeecccCcEEEE-ecCC----ceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        231 GSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIV-NDDK----STKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       231 g~~~~l~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      |+.+.+.|.+. +.|.+.+.|+.++..+......... ..+.    .+.|.+..-...+...++|.|.+..-
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            67999999665 6688999999998876211111111 1111    13455554444467789999988643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=94.45  E-value=0.12  Score=38.73  Aligned_cols=39  Identities=18%  Similarity=0.235  Sum_probs=27.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEe-eecC--CeeeeeeCCeee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANII-GEPV--PHVDWRAGGNPL   43 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~-g~P~--p~v~W~~~~~~l   43 (616)
                      ||.|..+++    +.+|..+++.|.+. +.|.  ..|.|+|+...+
T Consensus         3 ~p~i~~~~~----l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l   44 (99)
T cd07689           3 DPEILLSGP----LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLL   44 (99)
T ss_pred             CccCcccCc----ccCCceEEEEEEecCcccCCceEEEEecCccee
Confidence            455654433    47899999999965 5666  569999977543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=94.34  E-value=0.15  Score=38.55  Aligned_cols=30  Identities=10%  Similarity=0.016  Sum_probs=23.0

Q ss_pred             cCCeEEEEEEEeee-c-CceeEEEECCeeecc
Q psy12426        230 AGSNFEFDINVIGE-P-IPTKEWLCNDITIIS  259 (616)
Q Consensus       230 ~g~~~~l~c~~~~~-p-~~~~~W~~~~~~~~~  259 (616)
                      .+..++|.|.+.+- | ...+.|.++|..+..
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~   46 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSIL   46 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence            34568999999985 4 347899999988643

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=94.17  E-value=0.34  Score=36.52  Aligned_cols=29  Identities=21%  Similarity=0.228  Sum_probs=22.6

Q ss_pred             CCeEEEEEEEeee-cC-ceeEEEECCeeecc
Q psy12426        231 GSNFEFDINVIGE-PI-PTKEWLCNDITIIS  259 (616)
Q Consensus       231 g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~  259 (616)
                      +...+|.|.+.|- |. ..+.|.+||..+..
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~   45 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTD   45 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEECCeEccC
Confidence            4557899999985 43 58899999988654

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>TIGR00864 PCC polycystin cation channel protein

Probab=94.09  E-value=20  Score=44.19  Aligned_cols=342  Identities=12%  Similarity=0.045  Sum_probs=167.0

Q ss_pred             ceEecCCCeEEEEEEEeeecCCeeeeeeCCee-e--e---------eccceEE--EeecCCCCCce-------------e
Q psy12426         11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNP-L--N---------LRPIWEK--CAQTEGDTPKG-------------K   63 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~-l--~---------~~G~Y~C--~a~n~~~~~~~-------------~   63 (616)
                      +..+..|+.|+|.-...+-....+.|..++.. .  .         ..|.|..  .|.|..++...             .
T Consensus      1706 ~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~tHtf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~ 1785 (2740)
T TIGR00864      1706 DNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFMSHSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLK 1785 (2740)
T ss_pred             CCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCceEEEccCCceEEEEEEEEccccccceeEEEEEEeccccce
Confidence            44567799999998766666669999977652 1  1         1888876  78888776222             1


Q ss_pred             Eeeec-------------------cCCccc---eeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcc
Q psy12426         64 VLDLI-------------------EGNHPI---WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH  121 (616)
Q Consensus        64 v~~~~-------------------~~~~p~---w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~  121 (616)
                      +....                   ..|.+.   |.-.+............-. ....|.+...|.|..+....+....++
T Consensus      1786 i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~v~~Tf~-~aG~ytV~L~AsN~vs~~~~s~~~~VQ 1864 (2740)
T TIGR00864      1786 IRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKHACMTFP-DAGTFAIRLNASNAVSGKSASREFFAE 1864 (2740)
T ss_pred             EecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccceeEEecC-CCeEEEEEEEEEcccCcceeeeeEEEE
Confidence            11000                   113333   4333222111222222222 223566677788888755544221111


Q ss_pred             eee----cCCC-------ceee----eecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEE
Q psy12426        122 IAR----AKKG-------KCYH----LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYE  186 (616)
Q Consensus       122 ~~~----~~~p-------~~~~----~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~  186 (616)
                      ...    ....       ..+.    +..++.-.|.|..  .+         +.+...  .++  ..+ ...-..-..|.
T Consensus      1865 e~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~f--Gd---------gs~~~~--t~~--~t~-~HsY~~~G~Y~ 1928 (2740)
T TIGR00864      1865 EPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQI--GG---------AAPEVL--QPG--PRF-SHSFPRVDDHM 1928 (2740)
T ss_pred             EecceEEEecccccccCCCEEEEEEEecCCCceEEEEEe--CC---------CCceee--cCC--CeE-EeecCCCCcEE
Confidence            100    0000       0111    1134445566666  31         111111  011  122 23344566788


Q ss_pred             EEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEE
Q psy12426        187 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV  266 (616)
Q Consensus       187 y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~  266 (616)
                      +.+.|.|..+.....   ..+.+....  ..+.+.......+..|+...|.-.+.......+.|+.....+..+..  +.
T Consensus      1929 VtV~A~N~Vs~~~a~---~~V~Vle~V--~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~--~~ 2001 (2740)
T TIGR00864      1929 VNLRAKNEVSCAQAN---LHIEVLEAV--RGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSL--VI 2001 (2740)
T ss_pred             EEEEEEeccceeeee---EEEEEEEec--cceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcc--ee
Confidence            999999998874432   222221111  11111111122367888889988887777778999876443333322  12


Q ss_pred             ecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccce-----eecCCeEEEEEeCCCCCCCCc
Q psy12426        267 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPS-----NITKSSCNLEWRAPRDDGGTD  341 (616)
Q Consensus       267 ~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~-----~~~~~~~~l~W~~~~~~~~~~  341 (616)
                      ..+....++...   .-.+.+++.|.|..|.......+.++.+...    +.+.     ......+.+.....   .+..
T Consensus      2002 ~~G~~vty~~~~---~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~----~~L~~~p~~~~~n~~v~f~~~~~---~~~~ 2071 (2740)
T TIGR00864      2002 HMGKDVSYTAEA---AGLLEIQLGAFNALGAENITLQLEAQDALMD----AALQAGPQDCFTNKMAQFEAATS---PKPN 2071 (2740)
T ss_pred             ecCCceEEccCC---CcEEEEEEEEEcccCcccccEEEEEEeheee----EEEeecCcceecCceEEEEEEEc---cCCC
Confidence            223333444432   3466777899998888776666666554311    0011     11122333332210   0112


Q ss_pred             eEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        342 ILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       342 i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      -..|.+.+.+.....   ........+..  .++| .|.++|.|.|.....
T Consensus      2072 ~v~~~WDFGDGt~~~---~T~~~~~sHtY--~r~G-~Y~V~V~a~N~VS~~ 2116 (2740)
T TIGR00864      2072 FMACHWDFGDGSAGQ---DTDEPRAEHEY--LHPG-DYRVQVNASNLVSFF 2116 (2740)
T ss_pred             cEEEEEEecCCCCcc---ccCCceeEEEe--cCCc-cEEEEEEEEcceeee
Confidence            245666554432211   11111222222  2444 799999999988764

Note: this model has been restricted to the amino half because for technical reasons.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=94.04  E-value=0.37  Score=36.39  Aligned_cols=30  Identities=20%  Similarity=0.172  Sum_probs=24.0

Q ss_pred             cCCeEEEEEEEeee-cC-ceeEEEECCeeecc
Q psy12426        230 AGSNFEFDINVIGE-PI-PTKEWLCNDITIIS  259 (616)
Q Consensus       230 ~g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~  259 (616)
                      .|..++|.|.+.+- |. ..+.|++++..+..
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~   44 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETE   44 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCC
Confidence            56788999999985 43 37899999988654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PHA02982 hypothetical protein; Provisional

Probab=93.91  E-value=1.4  Score=37.76  Aligned_cols=119  Identities=16%  Similarity=0.232  Sum_probs=73.2

Q ss_pred             ceEEEcCCeEEEEEEEeeec-CceeEEEECCeeecc-------------------cCcEEEEecCCceEEEecCCCCCCc
Q psy12426        225 DIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITIIS-------------------KDRFKIVNDDKSTKLKVFDSKRGDS  284 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p-~~~~~W~~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~~~  284 (616)
                      ++....++.+.|.|...... ..+..|..++.....                   ...+.+..++..++|+|.++.....
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            45566788899999854332 336778875432211                   1233455567788999999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc
Q psy12426        285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG  361 (616)
Q Consensus       285 g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~  361 (616)
                      |-|+|.+....+....-               -.+..+..+.+.+.|..  .++...+..|...+. .+-..|...+
T Consensus       113 GCYtc~~ks~~~k~E~c---------------~kCl~V~~~~V~~~W~e--~nNeT~V~CyVgS~~-~dvp~W~V~G  171 (251)
T PHA02982        113 GCFTCEAKDAEGKEETC---------------EKCLEIQKEDILYVVEE--HNNETIITCFVGSKH-GDVPRFIVAG  171 (251)
T ss_pred             CceEEEEecCCCchhee---------------heeeeEecceEEEEEEe--cCCeEEEEEEEEecc-CCCccEEEee
Confidence            99999998865544321               23445556788899983  333334455544442 2223565443

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=93.72  E-value=0.37  Score=36.24  Aligned_cols=63  Identities=19%  Similarity=0.086  Sum_probs=36.5

Q ss_pred             cCCeEEEEEEEeee-c-CceeEEEECCeeecccCcE-EEEec--CCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        230 AGSNFEFDINVIGE-P-IPTKEWLCNDITIISKDRF-KIVND--DKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       230 ~g~~~~l~c~~~~~-p-~~~~~W~~~~~~~~~~~~~-~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .|....|.|.+.|- | ...+.|.+||..+. +... ....+  +.-.......+.+.+.-.|.|.+..
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H   81 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRH   81 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEE
Confidence            45566899999985 3 34789999999875 3211 11111  1111112223345566678888865

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=92.93  E-value=0.47  Score=32.58  Aligned_cols=49  Identities=14%  Similarity=0.150  Sum_probs=34.8

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      ...+.|.|..    ...|.|++ |..+....         ...+.+-+...+..|.|+|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            3468899965    24599999 54433111         23778888888999999998876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.69  E-value=0.87  Score=33.41  Aligned_cols=62  Identities=23%  Similarity=0.247  Sum_probs=38.8

Q ss_pred             CCeEEEEEEEeee-cC-ceeEEEECCeeecccCcEEEE--ecCC----ceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        231 GSNFEFDINVIGE-PI-PTKEWLCNDITIISKDRFKIV--NDDK----STKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       231 g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~~~~~~~~--~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      +..+.|.|.+.+- |. ..+.|++++..+.........  ..++    .+.|.+.   ..+...|+|.+....
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence            7789999999986 43 379999999987543322211  1121    1344444   444557889887643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>KOG3632|consensus

Probab=92.64  E-value=1.2  Score=47.36  Aligned_cols=198  Identities=20%  Similarity=0.227  Sum_probs=108.9

Q ss_pred             cEEEEEEEEcCCCCcee-eEEEEE-ecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc
Q psy12426        284 SGIYTLAVKNSWGTDKG-TAKVTV-LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG  361 (616)
Q Consensus       284 ~g~y~c~a~n~~g~~~~-~~~l~v-~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~  361 (616)
                      .|...+.+..+.|.... ...|.+ ...+..|.. +.+..++..+..++|-+...+    ..  .+.|......   ...
T Consensus       644 s~~isvq~ltSrGsqd~lrc~Llvgg~a~vvpsq-lrv~n~tqtSa~itwvp~nsn----~~--Hviyln~eE~---~ps  713 (1335)
T KOG3632|consen  644 SGYISVQRLTSRGSQDQLRCILLVGGAAPVVPSQ-LRVWNATQTSAMITWVPFNSN----FL--HVIYLNAEEP---RPS  713 (1335)
T ss_pred             ceeeehhhhhccCCCCcceeeEeccccccccchh-hhhhhhhchhhheeeeecCCC----cc--eeeecCCccC---CCc
Confidence            44444444445554432 222222 345566666 788888999999999853221    11  1222111111   111


Q ss_pred             ccccceEEeccccCCCeEEEEEEEEec-Cc-----CCCCccccCCEEccC-CCCCCCCCCCCEEEE-ecCCeEEEEecCC
Q psy12426        362 DVSGTYTRAENLIEGHDYNFRVKAVNK-IG-----ESLPLVCQSPITAKD-PFGRPDRPGQPTVTD-WGKDHVDLEWTPP  433 (616)
Q Consensus       362 ~~~~~~~~i~~L~~~~~y~~~v~a~n~-~g-----~~~~~~~s~~~~~~~-~~~~p~~p~~~~~~~-~~~~~v~l~W~~p  433 (616)
                      ......+++.+|.+++.|..+|.+.-. .+     ..........+.+.+ +.++|.+|.++++.. .+...+.++|.+|
T Consensus       714 ~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tLpAGppappldV~vE~g~spg~l~vswrPp  793 (1335)
T KOG3632|consen  714 VAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPP  793 (1335)
T ss_pred             hhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhccceeeecccCCCCCCchheeeecCCCCceeeeeccCc
Confidence            122345778899999999999887643 11     112222233344433 456778888888764 4778899999987


Q ss_pred             CC-----CCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCC-CeEEEEEEEEcCCCCCC
Q psy12426        434 KK-----DGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEG-EEYEFRVIAVNKGGPGE  493 (616)
Q Consensus       434 ~~-----~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~-t~Y~~~v~a~n~~G~g~  493 (616)
                      .-     .++..+++|.++..  +........-....+.+.+..|.-+ ..-.+.|+.....|.+-
T Consensus       794 tldsag~sngv~vtgYavyad--gqkv~Evafptagst~VelsQlq~~l~~~~V~vRtms~~gesv  857 (1335)
T KOG3632|consen  794 TLDSAGCSNGVAVTGYAVYAD--GQKVEEVAFPTAGSTKVELSQLQDGLYHGAVGVRTMSVPGESV  857 (1335)
T ss_pred             eeccccccCceeeeeeeeeeC--CceeeeeecccCCceEEEeeeehhhheecceeEEecccCcccc
Confidence            53     45667899999875  2222222222233445555555442 22345555555556543

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=92.43  E-value=0.95  Score=35.16  Aligned_cols=67  Identities=9%  Similarity=0.092  Sum_probs=45.3

Q ss_pred             ceEEEcCCeEEEEEEEeeecC---ceeEEEECCe-ee--------------cccCcEEE--EecCCceEEEecCCCCCCc
Q psy12426        225 DIKVRAGSNFEFDINVIGEPI---PTKEWLCNDI-TI--------------ISKDRFKI--VNDDKSTKLKVFDSKRGDS  284 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~---~~~~W~~~~~-~~--------------~~~~~~~~--~~~~~~~~l~i~~l~~~~~  284 (616)
                      ...+..|..++|.|.+++...   ..+.|.|... .+              ....++.+  ..+.+...|.|.+|+.+|.
T Consensus         7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT   86 (115)
T cd05721           7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT   86 (115)
T ss_pred             CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence            355677888999999976543   4678887321 10              01122222  3345567899999999999


Q ss_pred             EEEEEEE
Q psy12426        285 GIYTLAV  291 (616)
Q Consensus       285 g~y~c~a  291 (616)
                      ..|.|..
T Consensus        87 a~Y~Ca~   93 (115)
T cd05721          87 DIYFCKI   93 (115)
T ss_pred             eEEEEEe
Confidence            9999976

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=92.08  E-value=0.51  Score=36.31  Aligned_cols=30  Identities=17%  Similarity=0.108  Sum_probs=23.3

Q ss_pred             cCCeEEEEEEEeeecC--ceeEEEECCeeecc
Q psy12426        230 AGSNFEFDINVIGEPI--PTKEWLCNDITIIS  259 (616)
Q Consensus       230 ~g~~~~l~c~~~~~p~--~~~~W~~~~~~~~~  259 (616)
                      .+..++|.|.+.|--+  ..+.|.+++..+..
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~   46 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSK   46 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence            4668999999998633  36899999987643

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=91.64  E-value=1.5  Score=34.13  Aligned_cols=72  Identities=14%  Similarity=0.200  Sum_probs=50.5

Q ss_pred             ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc---cccceEEecccc--CCCeEEEEEEEEecCcC
Q psy12426        317 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD---VSGTYTRAENLI--EGHDYNFRVKAVNKIGE  391 (616)
Q Consensus       317 ~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~~~i~~L~--~~~~y~~~v~a~n~~g~  391 (616)
                      +.+.. ......|.|+++..  ...-..|.++++......|.....   .....+.++...  ....|.+||+|..+...
T Consensus        28 v~~~s-~nf~~iL~W~~~~~--~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~~~  104 (107)
T PF01108_consen   28 VTVDS-VNFKHILRWDPGPG--SPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEVGNQT  104 (107)
T ss_dssp             EEEEE-ETTEEEEEEEESTT--SSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEETTEE
T ss_pred             eEEEE-ECCceEEEeCCCCC--CCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEeCCcc
Confidence            44443 35568999997332  236688999999777788987732   445677777644  67899999999865543

...

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=91.53  E-value=0.84  Score=35.89  Aligned_cols=33  Identities=15%  Similarity=0.195  Sum_probs=24.9

Q ss_pred             EEcCCeEEEEEEEeee-cC-ceeEEEECCeeeccc
Q psy12426        228 VRAGSNFEFDINVIGE-PI-PTKEWLCNDITIISK  260 (616)
Q Consensus       228 v~~g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~~  260 (616)
                      +..+..+.|.|.+.+- |. ..+.|++|+..+..+
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g   49 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDG   49 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCC
Confidence            3355678999999985 44 489999999887543

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=91.11  E-value=0.46  Score=32.98  Aligned_cols=46  Identities=20%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             EEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCC
Q psy12426        444 YIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE  493 (616)
Q Consensus       444 Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~  493 (616)
                      |+......+++|......   ...+.+++|.|| .|.|+|+|.+..|...
T Consensus        10 Y~Y~l~g~d~~W~~~~~~---~~~~~~~~L~~G-~Y~l~V~a~~~~~~~~   55 (66)
T PF07495_consen   10 YRYRLEGFDDEWITLGSY---SNSISYTNLPPG-KYTLEVRAKDNNGKWS   55 (66)
T ss_dssp             EEEEEETTESSEEEESST---S-EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred             EEEEEECCCCeEEECCCC---cEEEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence            444443334477765322   229999999999 7999999999987643

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=90.88  E-value=2.2  Score=32.28  Aligned_cols=62  Identities=11%  Similarity=0.058  Sum_probs=36.6

Q ss_pred             eEEEEEEE-eeecCceeEEEECCeeecccCcEEE--EecCC---ceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        233 NFEFDINV-IGEPIPTKEWLCNDITIISKDRFKI--VNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       233 ~~~l~c~~-~~~p~~~~~W~~~~~~~~~~~~~~~--~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      ...+.|.+ .|.|.+.|.|+++..   .......  ..++.   .+.|.+......+.-.|+|.+.+..-.
T Consensus        17 ~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          17 VTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             cEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            46688998 478999999999721   1111111  11111   235555544444556899999886533

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=90.67  E-value=0.78  Score=35.20  Aligned_cols=81  Identities=20%  Similarity=0.269  Sum_probs=55.5

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecC---Cc-----cEEEcCCCCCCCeEE
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPA---NI-----TATSVPDLKEGEEYE  480 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~---~~-----~~~~l~~L~p~t~Y~  480 (616)
                      +|..|.++.........++.-|++.. .++.+ ..|.+.|...+..|........   +.     -.+.-.+..--+.|.
T Consensus         7 ~p~~P~~~~C~S~~~etftC~W~~g~-~~~l~-~~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~   84 (104)
T PF09067_consen    7 PPEKPENLKCFSREMETFTCFWEPGS-EGNLP-TNYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYC   84 (104)
T ss_dssp             HCCCCEEEEEEBSSSS-EEEEEEEES-SSTST-CEEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEE
T ss_pred             CCCCCccCccCCCCCCcEEEEeeCCC-CCCCC-CcEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEE
Confidence            56778888888888889999999643 33332 3499999987766666643221   12     234444777889999


Q ss_pred             EEEEEEcCCCC
Q psy12426        481 FRVIAVNKGGP  491 (616)
Q Consensus       481 ~~v~a~n~~G~  491 (616)
                      ++|.|.|..|.
T Consensus        85 i~V~a~~~~~~   95 (104)
T PF09067_consen   85 IQVEATNALGS   95 (104)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEeccCCCc
Confidence            99999998774

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>PHA03270 envelope glycoprotein C; Provisional

Probab=90.53  E-value=18  Score=35.24  Aligned_cols=80  Identities=11%  Similarity=0.006  Sum_probs=55.2

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC---cee
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI---PTK  248 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~---~~~  248 (616)
                      ..|.|..|+..++|.|.-...+..+.......   +.+. ...+|.+.+   ...-+..|+...-.|.+...=+   ..+
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~---VtV~-~yr~Psvsv---~~~PvL~Ge~Y~AtC~va~YYPp~Sv~l  254 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTW---TRVR-MFRRPSLSI---RPHAVLEGEPFGATCVAANYYPGDRAAF  254 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeE---EEEE-EecCCcccc---cCCccccCCCceEEEEeeeecCCCceEE
Confidence            36999999999999999987776653222221   2222 234565542   2234678999999999987633   379


Q ss_pred             EEEECCeeec
Q psy12426        249 EWLCNDITII  258 (616)
Q Consensus       249 ~W~~~~~~~~  258 (616)
                      .|++|+..+.
T Consensus       255 rWf~ng~~V~  264 (466)
T PHA03270        255 RWFEGGDEVF  264 (466)
T ss_pred             EEEeCCcccc
Confidence            9999998875

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=90.46  E-value=1.9  Score=32.59  Aligned_cols=66  Identities=11%  Similarity=0.013  Sum_probs=37.5

Q ss_pred             eEEEEEEEe-eecCceeEEEECCeeecccCcEEEEecCC---ceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        233 NFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       233 ~~~l~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      .+.+.|.+. +.|.+.|+|+++..... ........++.   .+.|.+......+.-.|+|.+.+..-...
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~   86 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEP   86 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence            467899877 77888999999722110 00111111121   23555544444456689999998654433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=90.25  E-value=1.4  Score=33.24  Aligned_cols=64  Identities=16%  Similarity=0.190  Sum_probs=36.3

Q ss_pred             CCeEEEEEEEeee-cC-ceeEEEECCeeecccCcE--EEEecCCc----eEEEecCCCCCCcEEEEEEEEcC
Q psy12426        231 GSNFEFDINVIGE-PI-PTKEWLCNDITIISKDRF--KIVNDDKS----TKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       231 g~~~~l~c~~~~~-p~-~~~~W~~~~~~~~~~~~~--~~~~~~~~----~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +..+.|.|.+.|- |. ..+.|.+++..+......  .....++.    +.|.+..-...+...|+|.+...
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~   85 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQ   85 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEEC
Confidence            4568899999985 44 589999999886322110  11111111    22333322223456889988764

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=90.03  E-value=1.9  Score=32.64  Aligned_cols=29  Identities=10%  Similarity=0.079  Sum_probs=22.4

Q ss_pred             EEcCCeEEEEEEEeee--cC-ceeEEEECCee
Q psy12426        228 VRAGSNFEFDINVIGE--PI-PTKEWLCNDIT  256 (616)
Q Consensus       228 v~~g~~~~l~c~~~~~--p~-~~~~W~~~~~~  256 (616)
                      +..+..++|.|.+.+-  |. ..++|.|++..
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~   42 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGE   42 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeE
Confidence            4457789999999988  33 37899998743

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG1480|consensus

Probab=89.91  E-value=0.18  Score=51.80  Aligned_cols=54  Identities=15%  Similarity=0.164  Sum_probs=45.9

Q ss_pred             CCCCCceEecCCCeEEEEEE-EeeecCCeeeeeeCCeeeee---------------------ccceEEEeecCCCC
Q psy12426          6 RRHLGDIKLSAGTTLKFDAN-IIGEPVPHVDWRAGGNPLNL---------------------RPIWEKCAQTEGDT   59 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~l~~---------------------~G~Y~C~a~n~~~~   59 (616)
                      .+.|.-..|..++.+.|.|. ..|.|+..++|+|++..+..                     .|+|+|+|.|..+.
T Consensus       133 ~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~  208 (909)
T KOG1480|consen  133 EQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAK  208 (909)
T ss_pred             ccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhcc
Confidence            44577788999999999998 78999999999999875532                     99999999998665

>KOG4597|consensus

Probab=89.64  E-value=0.88  Score=44.12  Aligned_cols=87  Identities=13%  Similarity=0.081  Sum_probs=62.3

Q ss_pred             ccCCcceEEEcCCeEEEEEEEeeecCceeEEEE---CCeeecccCcEEEE--ecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC---NDITIISKDRFKIV--NDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       220 ~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~---~~~~~~~~~~~~~~--~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      ..-+....+-.+++.++.|-+.|.+.+.+.|.+   ++..+.......+.  .-.+...|.|-+....+++-|+|.+.+.
T Consensus       200 ~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg  279 (560)
T KOG4597|consen  200 VDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCG  279 (560)
T ss_pred             ccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccc
Confidence            344556678889999999999999999999976   33322211111110  0112347899999999999999999999


Q ss_pred             CCCceeeEEEEE
Q psy12426        295 WGTDKGTAKVTV  306 (616)
Q Consensus       295 ~g~~~~~~~l~v  306 (616)
                      .|.....+.+.+
T Consensus       280 ~g~~~rdv~c~s  291 (560)
T KOG4597|consen  280 AGFLRRDVPCSS  291 (560)
T ss_pred             cceeeccceeee
Confidence            998877776655

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=89.41  E-value=2.8  Score=31.12  Aligned_cols=42  Identities=10%  Similarity=0.209  Sum_probs=30.2

Q ss_pred             CCceEecCCCeEEEEEEEee-----ecCCeeeeeeCCeeeeeccceEE
Q psy12426          9 LGDIKLSAGTTLKFDANIIG-----EPVPHVDWRAGGNPLNLRPIWEK   51 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g-----~P~p~v~W~~~~~~l~~~G~Y~C   51 (616)
                      |+...|..|+.|+..|...-     .....|.|..|+..++ ...|+-
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-~~qy~~   56 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-GSQYRV   56 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-CGCEEE
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-hhHcce
Confidence            66778999999999999652     2556799999998666 555543

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=89.08  E-value=3.5  Score=31.13  Aligned_cols=70  Identities=11%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             cceEEEcCCeEEE-EEEEe-eecCceeEEEECCeeecccCcEEEEecCC---ceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        224 SDIKVRAGSNFEF-DINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       224 ~~~~v~~g~~~~l-~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      ....+.+|+.+.+ .|.+. ++|.+.|+|+.+..... ........++.   .+.|.+......+.-.++|.+...
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~   83 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP   83 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence            3456778888888 88765 66888999998633211 10001111111   134555444444666888988764

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>KOG4806|consensus

Probab=89.05  E-value=20  Score=33.68  Aligned_cols=118  Identities=18%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             eccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEe--cCCeEEEEecCCCCCCCCcceeEEEE
Q psy12426        370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDW--GKDHVDLEWTPPKKDGGSPISQYIIE  447 (616)
Q Consensus       370 i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~i~~Y~i~  447 (616)
                      -..+.++..|.+++...|..-.-........ +-.+....|.-|.+-.+..+  ..++.++.|....+.    -..|=|+
T Consensus       288 Qfvv~~~~~~~~rf~~~ndde~~~~v~V~aS-t~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~----~~kyCIy  362 (454)
T KOG4806|consen  288 QFVVLPGERYLMRFEPSNDDEALQKVMVAAS-TEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE----ELKYCIY  362 (454)
T ss_pred             EEEecCCCceEEEEEecCCchhhheeEeeee-cccccCcCCCCCCCceEeeeccccchheeeeccCcch----heeEEEE
Confidence            3456778889999988875543211100000 01112355777777666655  678899999853221    2346665


Q ss_pred             EeeCCC--------------------------CceEe---EeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCC
Q psy12426        448 KKPKYG--------------------------PWEKA---CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPG  492 (616)
Q Consensus       448 ~~~~~~--------------------------~~~~~---~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g  492 (616)
                      .+...+                          .|...   ...+.+...-+|-+|.||.+|.+-|.|.-..|..
T Consensus       363 ~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~  436 (454)
T KOG4806|consen  363 VFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKP  436 (454)
T ss_pred             EecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcc
Confidence            544321                          12211   1112223466788999999999999997666543

>PHA03271 envelope glycoprotein C; Provisional

Probab=88.19  E-value=26  Score=33.94  Aligned_cols=83  Identities=11%  Similarity=-0.046  Sum_probs=56.7

Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC---c
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI---P  246 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~---~  246 (616)
                      ....+.|.++...++|.|++...+........   ..+.+....-+|.+.+.   ..-+..|+...-.|.+...=+   .
T Consensus       205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e---~~~~~~v~~RPPsVsV~---a~PVL~Ge~YkAtC~vAnYYPP~Sv  278 (490)
T PHA03271        205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLD---KHIYIRVCQRPASVDVL---APPVLSGENYKASCIVRHFYPPGSV  278 (490)
T ss_pred             ceeeEEEEEeecccceEEEEEecCCCCCcccc---ceEEEEEEecCCCcccc---CCccccCCCceEEEEeeeecCCCce
Confidence            34478999999999999988877655442211   22444444456655432   234678999999999987633   3


Q ss_pred             eeEEEECCeeec
Q psy12426        247 TKEWLCNDITII  258 (616)
Q Consensus       247 ~~~W~~~~~~~~  258 (616)
                      .+.|++||....
T Consensus       279 rlrWf~nG~~V~  290 (490)
T PHA03271        279 YVSWRQNGNIAT  290 (490)
T ss_pred             EEEEEeCCcccc
Confidence            799999988764

>KOG4806|consensus

Probab=88.14  E-value=22  Score=33.45  Aligned_cols=110  Identities=18%  Similarity=0.286  Sum_probs=61.3

Q ss_pred             cCCCCCCcEEEEEEEEcCCCCce-----eeEEEEEecCCCCCCCCcccee--ecCCeEEEEEeCCCCCCCCceEEEEEEE
Q psy12426        277 FDSKRGDSGIYTLAVKNSWGTDK-----GTAKVTVLDIPSPPEGPLKPSN--ITKSSCNLEWRAPRDDGGTDILHYVVEK  349 (616)
Q Consensus       277 ~~l~~~~~g~y~c~a~n~~g~~~-----~~~~l~v~~~p~~p~~~~~~~~--~~~~~~~l~W~~~~~~~~~~i~~y~v~~  349 (616)
                      ..+.+...|.|++...|......     .+...+....|..|.+ -.+..  ..-+++++.|....+.    -..|.|..
T Consensus       289 fvv~~~~~~~~rf~~~ndde~~~~v~V~aSt~~t~~~~P~LP~d-TtVk~v~r~CSsAtIaW~gs~d~----~~kyCIy~  363 (454)
T KOG4806|consen  289 FVVLPGERYLMRFEPSNDDEALQKVMVAASTEATFRDLPELPQD-TTVKNVRRRCSSATIAWNGSPDE----ELKYCIYV  363 (454)
T ss_pred             EEecCCCceEEEEEecCCchhhheeEeeeecccccCcCCCCCCC-ceEeeeccccchheeeeccCcch----heeEEEEE
Confidence            34555678888888887543321     2333444556666765 33333  4556799999854332    34455544


Q ss_pred             EeCCCC-------------------------CEEEccc-----cccceEEeccccCCCeEEEEEEEEecCcC
Q psy12426        350 MDMETG-------------------------RWVPMGD-----VSGTYTRAENLIEGHDYNFRVKAVNKIGE  391 (616)
Q Consensus       350 ~~~~~~-------------------------~~~~~~~-----~~~~~~~i~~L~~~~~y~~~v~a~n~~g~  391 (616)
                      ++....                         .|.....     ..-.+-+|.+|.||..|.+-|.|.-..|.
T Consensus       364 ~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~  435 (454)
T KOG4806|consen  364 FNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGK  435 (454)
T ss_pred             ecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCc
Confidence            332110                         0111110     11224567899999999999988654443

>PHA03042 CD47-like protein; Provisional

Probab=87.95  E-value=0.95  Score=40.59  Aligned_cols=41  Identities=12%  Similarity=0.074  Sum_probs=31.3

Q ss_pred             CCeEEEEEEEeee-----cCCeeeeeeCCeeeee-----------------ccceEEEeecCC
Q psy12426         17 GTTLKFDANIIGE-----PVPHVDWRAGGNPLNL-----------------RPIWEKCAQTEG   57 (616)
Q Consensus        17 g~~v~l~C~~~g~-----P~p~v~W~~~~~~l~~-----------------~G~Y~C~a~n~~   57 (616)
                      +++|.+.|.+..-     -.-.|.|.++++.+-.                 .|+|+|+|.+..
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f~~~l~GNYTCEv~~l~   93 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNFSKNLSGNYTCEAINKF   93 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEeccccCCCceeEEEeecc
Confidence            6899999997642     2345999998876522                 999999998864

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=87.85  E-value=4.8  Score=29.89  Aligned_cols=66  Identities=14%  Similarity=0.239  Sum_probs=43.4

Q ss_pred             cceEEEcCCeEEEEEEEeee-----cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEE
Q psy12426        224 SDIKVRAGSNFEFDINVIGE-----PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      ....+..|+.++.+|.....     ....+.|..++..+ +..++....+ ..+++++.++.....-.|.|..
T Consensus        11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i-P~~qy~~in~-~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI-PGSQYRVIND-TVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES-TCGCEEEEST-TEEEEEESS--SSEEEEEEEEE
T ss_pred             CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC-ChhHcceeCC-eEEEEEEccCCCCCceEEEEEE
Confidence            34567899999999999744     34479999998854 4555554433 3478899998877666666653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA02633 hypothetical protein; Provisional

Probab=87.19  E-value=1.9  Score=28.88  Aligned_cols=38  Identities=21%  Similarity=0.264  Sum_probs=29.6

Q ss_pred             eEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy12426        272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI  309 (616)
Q Consensus       272 ~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~  309 (616)
                      ..|-|.++...|+|.|.|..+|..-....+..++|...
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            47889999999999999999986555566666666543

>PHA02982 hypothetical protein; Provisional

Probab=86.99  E-value=2.7  Score=36.03  Aligned_cols=90  Identities=14%  Similarity=0.085  Sum_probs=57.9

Q ss_pred             ceEecCCCeEEEEEE-EeeecCCeeeeeeCCee-eee--ccceEEEeecCC-CCCce-eEeeeccCCccceeeccccCCC
Q psy12426         11 DIKLSAGTTLKFDAN-IIGEPVPHVDWRAGGNP-LNL--RPIWEKCAQTEG-DTPKG-KVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~-~~g~P~p~v~W~~~~~~-l~~--~G~Y~C~a~n~~-~~~~~-~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      |+....|+.|.|.|. -.+.---...|.+++.. |..  .|.+...|.|-. |..+. .-+.+              .+.
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv--------------~g~   98 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSV--------------SGN   98 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEE--------------ecc
Confidence            566778999999998 33344446889986532 221  455555555542 11111 11111              345


Q ss_pred             CCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                      .++|+|.++.+...|=|.|.|..+.+..+.
T Consensus        99 ~STLTIkk~~i~N~GCYtc~~ks~~~k~E~  128 (251)
T PHA02982         99 SSTFTMKKPDPQNLGCFTCEAKDAEGKEET  128 (251)
T ss_pred             ceeEEeccCCcccCCceEEEEecCCCchhe
Confidence            679999999999999999999976665543

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=86.63  E-value=2.1  Score=32.55  Aligned_cols=29  Identities=14%  Similarity=0.107  Sum_probs=22.4

Q ss_pred             EEcCCeEEEEEEEeeec---CceeEEEECCee
Q psy12426        228 VRAGSNFEFDINVIGEP---IPTKEWLCNDIT  256 (616)
Q Consensus       228 v~~g~~~~l~c~~~~~p---~~~~~W~~~~~~  256 (616)
                      ...+..++|.|.+.+--   ...+.|.+++..
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            33567899999999843   358999999875

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=86.09  E-value=0.97  Score=36.02  Aligned_cols=28  Identities=11%  Similarity=0.165  Sum_probs=17.4

Q ss_pred             CCCeEEEEEEEeee-----cCCeeeeeeCCeee
Q psy12426         16 AGTTLKFDANIIGE-----PVPHVDWRAGGNPL   43 (616)
Q Consensus        16 ~g~~v~l~C~~~g~-----P~p~v~W~~~~~~l   43 (616)
                      =+++|.|.|.+...     +.-.|+|.++|+.+
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~I   58 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDI   58 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEE
Confidence            36899999998652     22348999987754

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG4597|consensus

Probab=85.68  E-value=0.63  Score=45.03  Aligned_cols=32  Identities=9%  Similarity=-0.020  Sum_probs=28.6

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeee
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRA   38 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~   38 (616)
                      ..|....|-.|++..++|-+.|.|.|.|.|.+
T Consensus       201 ~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~q  232 (560)
T KOG4597|consen  201 DCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQ  232 (560)
T ss_pred             cCcchhhcccchhhcccccccCCcCceeeeeh
Confidence            34667788999999999999999999999986

>TIGR00868 hCaCC calcium-activated chloride channel protein 1

Probab=85.61  E-value=63  Score=35.67  Aligned_cols=86  Identities=21%  Similarity=0.317  Sum_probs=51.4

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCC--CCCCcceeEEEEEeeCCC----CceEeE---------eecCCccE--EEcC
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKK--DGGSPISQYIIEKKPKYG----PWEKAC---------IVPANITA--TSVP  471 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~--~~~~~i~~Y~i~~~~~~~----~~~~~~---------~~~~~~~~--~~l~  471 (616)
                      +|+...+|++. .....|.|+|+.|..  +.| ...+|.|.+...-.    ++....         ...+....  +...
T Consensus       755 PP~rItDL~~~-~~~~~v~LsWTAPG~d~D~G-~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~e~~~f~~~  832 (863)
T TIGR00868       755 PPSKITDLEAG-FQGDNIILTWTAPGDVLDHG-RADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSKEVFVFKPE  832 (863)
T ss_pred             CCccceeeEEe-ecCCEEEEEeeCCCccCCCC-ccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCceeEEEEeCC
Confidence            34444555553 345569999999986  555 58889999965421    111111         11122223  3334


Q ss_pred             CC--CCCCeEEEEEEEEcCCCC-CCCCC
Q psy12426        472 DL--KEGEEYEFRVIAVNKGGP-GEPSK  496 (616)
Q Consensus       472 ~L--~p~t~Y~~~v~a~n~~G~-g~~s~  496 (616)
                      +.  +.++.|.|-++|++..|. |+.|+
T Consensus       833 ~~~~~~~~~~~~ai~a~d~~~~~s~~sn  860 (863)
T TIGR00868       833 GIPIENGTDLFIAVQAIDKANLTSEVSN  860 (863)
T ss_pred             cccccCCeEEEEEEEEEccccccccccc
Confidence            42  257899999999999874 55554

distributions. found a row in 1A13.INFO that was not parsed out

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=85.50  E-value=1.3  Score=39.66  Aligned_cols=46  Identities=22%  Similarity=0.267  Sum_probs=36.4

Q ss_pred             CceeEEEECC-eeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        245 IPTKEWLCND-ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       245 ~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .|.+.|...+ ..+....++.+...|   .|.+.+....++|.|+|....
T Consensus        12 DP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             CCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEE
Confidence            4678999754 445555677777666   899999999999999999865

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=85.15  E-value=3.7  Score=30.58  Aligned_cols=37  Identities=16%  Similarity=0.144  Sum_probs=25.2

Q ss_pred             eEEEEEEEeeecCCeeeeeeCCeeeee-------------ccceEEEeecC
Q psy12426         19 TLKFDANIIGEPVPHVDWRAGGNPLNL-------------RPIWEKCAQTE   56 (616)
Q Consensus        19 ~v~l~C~~~g~P~p~v~W~~~~~~l~~-------------~G~Y~C~a~n~   56 (616)
                      ...|.+.+.|. .+.+.|+.||..+..             .|.|+..+.+.
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vvD~   80 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVVDA   80 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEEcC
Confidence            55666665555 448999999998832             57776666544

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=85.09  E-value=8.5  Score=29.32  Aligned_cols=71  Identities=20%  Similarity=0.360  Sum_probs=41.0

Q ss_pred             EEEEEEEeeecCce--eEEEECCeeecc---cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEE
Q psy12426        234 FEFDINVIGEPIPT--KEWLCNDITIIS---KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~~p~~~--~~W~~~~~~~~~---~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v  306 (616)
                      +.|.-.....+...  ++|..+......   ..++.....  ...|.|+.+++.|+|.|.+.+.+..|.. ...+.+.|
T Consensus        30 v~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~e--nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   30 VQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSE--NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             EEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETT--TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             EEEEEEcccCCceEEEEEEcCCCcccccccccceEeeecc--CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            44444443344333  556544333221   234444433  3599999999999999999999988876 33444443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=83.06  E-value=5.5  Score=27.47  Aligned_cols=38  Identities=26%  Similarity=0.494  Sum_probs=26.9

Q ss_pred             CCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        354 TGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       354 ~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ...|........ .+.+.+|.+| .|+|.|+|.+..|...
T Consensus        18 d~~W~~~~~~~~-~~~~~~L~~G-~Y~l~V~a~~~~~~~~   55 (66)
T PF07495_consen   18 DDEWITLGSYSN-SISYTNLPPG-KYTLEVRAKDNNGKWS   55 (66)
T ss_dssp             ESSEEEESSTS--EEEEES--SE-EEEEEEEEEETTS-B-
T ss_pred             CCeEEECCCCcE-EEEEEeCCCE-EEEEEEEEECCCCCcC
Confidence            357887765433 8899999998 7999999999888654

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PHA03269 envelope glycoprotein C; Provisional

Probab=82.87  E-value=54  Score=32.70  Aligned_cols=84  Identities=12%  Similarity=-0.044  Sum_probs=54.0

Q ss_pred             CCCCeEEeecccCCCeEEEEEEEEeCC-CCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC--
Q psy12426        169 GDTPKGKVLDLIEGNQYEFRVLAVNKG-GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI--  245 (616)
Q Consensus       169 ~~~~~l~i~~l~~~~~~~y~c~a~n~~-g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~--  245 (616)
                      .+...|.|.+|+..++|.|.-+..+.. +.....   ..+.+.. ..+|.+.+   ...-+..|+...-.|.+...=+  
T Consensus       286 p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~---~~VtV~~-yr~PsVsV---~p~PVL~Ge~YkAtC~vA~YYPp~  358 (566)
T PHA03269        286 TSDFSLHILSLDASTEGTYIWRVIHTANKNVINE---HHITVMS-YKRPNITV---IGDPVLLGNPYAAYCKVNKYYPPH  358 (566)
T ss_pred             CCccceEEeecccccCceEEEEEecCCCCceeee---eEEEEEE-ecCCCccc---cCCccccCCCceEEEEeeeecCCC
Confidence            344569999999999999976654332 221111   1233322 34555432   2234678999999999987633  


Q ss_pred             -ceeEEEECCeeecc
Q psy12426        246 -PTKEWLCNDITIIS  259 (616)
Q Consensus       246 -~~~~W~~~~~~~~~  259 (616)
                       ..+.|++|+..+..
T Consensus       359 SvrlrWf~ng~~V~~  373 (566)
T PHA03269        359 SVIVKWTSNFGNIGK  373 (566)
T ss_pred             ceEEEEEeCCcccCc
Confidence             37999999888764

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=81.94  E-value=3.6  Score=32.85  Aligned_cols=78  Identities=14%  Similarity=0.056  Sum_probs=41.1

Q ss_pred             EEcCCeEEEEEEEee-----ecCceeEEEECCeeecc--cC-cEEEEe----------cCCceEEEecCCCCCCcEEEEE
Q psy12426        228 VRAGSNFEFDINVIG-----EPIPTKEWLCNDITIIS--KD-RFKIVN----------DDKSTKLKVFDSKRGDSGIYTL  289 (616)
Q Consensus       228 v~~g~~~~l~c~~~~-----~p~~~~~W~~~~~~~~~--~~-~~~~~~----------~~~~~~l~i~~l~~~~~g~y~c  289 (616)
                      ..-++++.|.|.+..     .+...++|..++..+..  +. ......          ..+..+|.+...+.- .|.|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            335678899999865     23457999998877531  11 111010          122334666553332 799999


Q ss_pred             EEEcCCCCceeeEEEEE
Q psy12426        290 AVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       290 ~a~n~~g~~~~~~~l~v  306 (616)
                      .+............|..
T Consensus       103 eVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  103 EVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEecCCCceEEEEEEE
Confidence            99876655555555543

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=81.85  E-value=9.2  Score=28.90  Aligned_cols=27  Identities=15%  Similarity=0.203  Sum_probs=21.3

Q ss_pred             cCCeEEEEEEEeee-c-CceeEEEECCee
Q psy12426        230 AGSNFEFDINVIGE-P-IPTKEWLCNDIT  256 (616)
Q Consensus       230 ~g~~~~l~c~~~~~-p-~~~~~W~~~~~~  256 (616)
                      .++.+.|.|.+.+- | ...+.|.+++..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            34568899999985 3 347899999987

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=81.05  E-value=11  Score=28.95  Aligned_cols=78  Identities=19%  Similarity=0.240  Sum_probs=51.2

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc---cccce-----EEec--cccCCCeE
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD---VSGTY-----TRAE--NLIEGHDY  379 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~-----~~i~--~L~~~~~y  379 (616)
                      |..|.. +.........++.-|++... ++.+ ..|.+.|...+ ..|..+..   ....+     +.+.  +..-...|
T Consensus         8 p~~P~~-~~C~S~~~etftC~W~~g~~-~~l~-~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y   83 (104)
T PF09067_consen    8 PEKPEN-LKCFSREMETFTCFWEPGSE-GNLP-TNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPY   83 (104)
T ss_dssp             CCCCEE-EEEEBSSSS-EEEEEEEESS-STST-CEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEE
T ss_pred             CCCCcc-CccCCCCCCcEEEEeeCCCC-CCCC-CcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEE
Confidence            444444 55666677889999996543 3322 33999998765 67777654   11223     4444  77888999


Q ss_pred             EEEEEEEecCcC
Q psy12426        380 NFRVKAVNKIGE  391 (616)
Q Consensus       380 ~~~v~a~n~~g~  391 (616)
                      .++|.+.|..|.
T Consensus        84 ~i~V~a~~~~~~   95 (104)
T PF09067_consen   84 CIQVEATNALGS   95 (104)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEeccCCCc
Confidence            999999998875

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>PLN02533 probable purple acid phosphatase

Probab=81.00  E-value=6.8  Score=39.42  Aligned_cols=71  Identities=17%  Similarity=0.222  Sum_probs=44.7

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEe----E-------eecCCccEEEcCCCCC
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKA----C-------IVPANITATSVPDLKE  475 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~----~-------~~~~~~~~~~l~~L~p  475 (616)
                      ..+..|..+++.-.+.+++.|+|.-...  ..    -.|+|....+ .....    .       -.++-.....|++|+|
T Consensus        39 ~~~~~P~qvhls~~~~~~m~V~W~T~~~--~~----~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p  112 (427)
T PLN02533         39 DDPTHPDQVHISLVGPDKMRISWITQDS--IP----PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP  112 (427)
T ss_pred             CCCCCCceEEEEEcCCCeEEEEEECCCC--CC----CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence            3566788888887789999999985322  11    2245544322 11111    0       0122235678999999


Q ss_pred             CCeEEEEEE
Q psy12426        476 GEEYEFRVI  484 (616)
Q Consensus       476 ~t~Y~~~v~  484 (616)
                      +|.|.|+|-
T Consensus       113 ~T~Y~Yrvg  121 (427)
T PLN02533        113 NTVYYYKCG  121 (427)
T ss_pred             CCEEEEEEC
Confidence            999999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	616
3lpw_A	197	Crystal Structure Of The Fniii-Tandem A77-A78 From		3e-24
3lpw_A	197	Crystal Structure Of The Fniii-Tandem A77-A78 From		7e-11
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		5e-20
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		3e-11
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		4e-05
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		1e-10
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		3e-08
2cqv_A	114	Solution Structure Of The Eighth Ig-Like Domain Of		3e-08
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		5e-08
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		6e-08
1bpv_A	112	Titin Module A71 From Human Cardiac Muscle, Nmr, 50		1e-07
1uey_A	127	Solution Structure Of The First Fibronectin Type Ii		2e-07
1uey_A	127	Solution Structure Of The First Fibronectin Type Ii		4e-04
2yux_A	120	Solution Structure Of 3rd Fibronectin Type Three Do		3e-07
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		9e-06
1x4z_A	121	Solution Structure Of The 2nd Fibronectin Type Iii		1e-05
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		1e-05
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		2e-05
1wf5_A	121	Solution Structure Of The First Fn3 Domain Of Sidek		4e-05
1wit_A	93	Twitchin Immunoglobulin Superfamily Domain (Igsf Mo		5e-05
1u2h_A	99	X-Ray Structure Of The N-Terminally Truncated Human		2e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-04
2crz_A	110	Solution Structure Of The Fifth Fniii Domain Of Hum		5e-04
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		7e-04

>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 103/199 (51%), Gaps = 6/199 (3%)
Query: 307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSG 365
           +D P PP+  LK   +TK+S  L W  P  DGG+ I +Y+VEK +     +  +  +   
Sbjct: 3   MDTPGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHK 61
Query: 366 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDH 425
           T  + + L EG  Y FRV A N+ G  LP      + A +   RP  PG+ T+ D  ++ 
Sbjct: 62  TSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASE---RPLPPGKITLMDVTRNS 118
Query: 426 VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIA 485
           V L W  P+ DGGS I  YI+E + K G  + A      +T  ++  L +GEEY FRV A
Sbjct: 119 VSLSWEKPEHDGGSRILGYIVEMQTK-GSDKWATCATVKVTEATITGLIQGEEYSFRVSA 177
Query: 486 VNKGGPGEPSKASAPVTCK 504
            N+ G  +P + S PV  K
Sbjct: 178 QNEKGISDPRQLSVPVIAK 196

>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The A-Band Of Titin Length = 197

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 75/199 (37%), Gaps = 53/199 (26%)
Query: 408 GRPDRPGQPT---VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPAN 464
           G  D PG P    V +  K  V L W PP  DGGS I  YI+EK+              +
Sbjct: 1   GAMDTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCH 60
Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQE 524
            T+  V  L+EG  Y FRV+A N+ G G P++ +  V    R                  
Sbjct: 61  KTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER------------------ 102
Query: 525 YNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNG 584
                                           P  P K    DV ++ + + W++P  +G
Sbjct: 103 --------------------------------PLPPGKITLMDVTRNSVSLSWEKPEHDG 130
Query: 585 GSAIKGYEVERRERTSGRW 603
           GS I GY VE + + S +W
Sbjct: 131 GSRILGYIVEMQTKGSDKW 149

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 105/235 (44%), Gaps = 22/235 (9%)
Query: 187 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 246
           ++V A N+GG    S   +  +    K+      + +  +    G      I   G+P P
Sbjct: 77  YQVRATNQGG--SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP 134
Query: 247 TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS--KRGDSGIYTLAVKNSWGTDKGTAKV 304
              W      I +   ++++     T L VF +  +R D+G Y +  KN +G D+ T ++
Sbjct: 135 VITWQKGQDLIDNNGHYQVIVTRSFTSL-VFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
            V D+P PP G +K S++++ S NL W  P  DGG+ I +Y+VEK      RW+ +G   
Sbjct: 194 DVADVPDPPRG-VKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR 252
Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT 419
            T     NL     Y FRV A NK G S                +P  P +PT+T
Sbjct: 253 ETRYTVINLFGKTSYQFRVIAENKFGLS----------------KPSEPSEPTIT 291

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 119/305 (39%), Gaps = 40/305 (13%)
Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS--TKLKVF 277
           +++L ++ VR  SN      V G P P  +W      II+      + + K    +L + 
Sbjct: 8   KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIA 67
Query: 278 DSKRGDSGIYTLAVKNSWGTDKGTAKVTV-----LDIPSPPEG--PLKPSNITKSSCNLE 330
                D+ +Y +   N  G+  GTA + V     + +P   EG   +        S  + 
Sbjct: 68  SVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIP 127
Query: 331 WRAPRD-----DGGTDIL----HYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNF 381
           +    D       G D++    HY V      T    P G            +E  D  F
Sbjct: 128 FSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNG------------VERKDAGF 175
Query: 382 RVK-AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSP 440
            V  A N+ G              D    PD P    V+D  +D V+L WT P  DGGS 
Sbjct: 176 YVVCAKNRFG------IDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSK 229
Query: 441 ISQYIIEKKPKYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           I+ YI+EK       W +  +  A  T  +V +L     Y+FRVIA NK G  +PS+ S 
Sbjct: 230 ITNYIVEKCATTAERWLR--VGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSE 287
Query: 500 PVTCK 504
           P   K
Sbjct: 288 PTITK 292

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 528 FITLLFKNFVLDLNEGL------------KSMVKLSYIDNVPGKPSKPEATDVDKDHIKI 575
           F +L+F N V   + G             +  V+L   D VP  P   + +DV +D + +
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD-VPDPPRGVKVSDVSRDSVNL 217
Query: 576 KWQQPISNGGSAIKGYEVERRERTSGRWIKI 606
            W +P S+GGS I  Y VE+   T+ RW+++
Sbjct: 218 TWTEPASDGGSKITNYIVEKCATTAERWLRV 248

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P+ P  P + +   + V L W PP  DGGS ++ Y IEK+   G     C   +  T T+
Sbjct: 10  PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPC-AKSRYTYTT 68
Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPV 501
           +  L+ G++YEFR+IA NK G  +P + +APV
Sbjct: 69  IEGLRAGKQYEFRIIAENKHGQSKPCEPTAPV 100

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 115/285 (40%), Gaps = 21/285 (7%)
Query: 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYT 288
           G+      +V   P  +  W  + + + +K+    K  +  +   L++  +   D G Y 
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 289 LAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE 348
               N  GT      + + D+PS P G +K   +++++  + +  P   GG  I HY V+
Sbjct: 175 CTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233
Query: 349 KMDMETGRW-VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGE----SLPLVCQSPITA 403
             ++ +  W +       T     NL     Y  RV AVN  G+     + +    P+  
Sbjct: 234 VKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVRE 293
Query: 404 KDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE--KKPKYGPW-EKACI 460
             P   P   GQP+     K  +       + DGG+PI +YI++   K K   W EK   
Sbjct: 294 PSP---PSIHGQPSSGKSFKLSIT-----KQDDGGAPILEYIVKYRSKDKEDQWLEKK-- 343
Query: 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
           V  N     +  L+    YE ++ A N+ G  EP+     +  KP
Sbjct: 344 VQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKP 388

>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human Myosin Light Chain Kinase Length = 114

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDS 284
           D KVRAG + E    V G    T  W+     I   +  K+ N +  +KL +  +++   
Sbjct: 16  DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHC 75
Query: 285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG-PLKPSN 321
           G YTL V+N  G+ +    +TV+D P PP G P  PS+
Sbjct: 76  GCYTLLVENKLGSRQAQVNLTVVDKPDPPAGTPSGPSS 113

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKR 281
           SDI +  G          GEP P   W C    I S++  RF I N D  T L + D ++
Sbjct: 13  SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK 72
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
            D G+YTL++ N +G+D  T  + +  I
Sbjct: 73  QDGGLYTLSLGNEFGSDSATVNIHIRSI 100

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKR 281
           SDI +  G          GEP P   W C    I S++  RF I N D  T L + D ++
Sbjct: 15  SDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQK 74
Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
            D G+YTL++ N +G+D  T  + +  I
Sbjct: 75  QDGGLYTLSLGNEFGSDSATVNIHIRSI 102

>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50 Structures Length = 112

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP-KYGPWEKACIVPANITATS 469
           D PG+P   +  +  V L+W  P+  GG  I+ YI+EK+    G W KA          +
Sbjct: 12  DPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFT 71
Query: 470 VPDLKEGEEYEFRVIAVNKGG----PGEPSKASAPVTCK 504
           V  L E   YEFRVIA N  G    P EPS A   +TC+
Sbjct: 72  VSGLTEDAAYEFRVIAKNAAGAISPPSEPSDA---ITCR 107

>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa0343 Protein Length = 127

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 299 KGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM--ETGR 356
            G     V D+P+PP   L+ ++    S  L W  P DD  + I  +++E  D   + G 
Sbjct: 6   SGPTPAPVYDVPNPPFD-LELTDQLDKSVQLSW-TPGDDNNSPITKFIIEYEDAMHKPGL 63
Query: 357 WVPMGDVSGTYTRAE-NLIEGHDYNFRVKAVNKIGESLP 394
           W    +VSGT T A+ NL    +Y+FRV AVN IG+SLP
Sbjct: 64  WHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLP 102

>pdb|1UEY|A Chain A, Solution Structure Of The First Fibronectin Type Iii Domain Of Human Kiaa0343 Protein Length = 127

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP---KYGPWEKACIVPA 463
           +  P+ P    +TD     V L WTP   D  SPI+++IIE +    K G W     V  
Sbjct: 14  YDVPNPPFDLELTDQLDKSVQLSWTP-GDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 464 NITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
             T   + +L     Y FRV+AVN  G   PS+AS
Sbjct: 73  TQTTAQL-NLSPYVNYSFRVMAVNSIGKSLPSEAS 106

>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of Slow Type Myosin-Binding Protein C Length = 120

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 411 DRPGQPTVTD----WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANIT 466
           DRPG P +      WG ++V L WTPPK DG + I+ Y I+K  K        I   + T
Sbjct: 16  DRPGPPQIVKIEDVWG-ENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRT 74
Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
           + ++ +L  G EY FRV + N  G  E +  +
Sbjct: 75  SATITELVIGNEYYFRVFSENMCGLSEDATMT 106

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
           L D  V + S  +F +   GEP PT  W  +   I    ++K+  D     L++  +   
Sbjct: 13  LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVLDI 309
           DSG+YT  VKNS G+   + K+T+  I
Sbjct: 73  DSGLYTCTVKNSAGSVSSSCKLTIKAI 99

>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain From Mouse Biregional Cell Adhesion Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding Protein Length = 121

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP--KYGPWEKA-CIVPANIT 466
           P+ P +PT++   +  V + W P + +GG PI  + +E K   K G W  A   +P +  
Sbjct: 18  PEAPDRPTISTASETSVYVTWIP-RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503
           +  +  L++G  Y+FRV A+N  G  EPS  S P   
Sbjct: 77  SVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV 113

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 279
           R ++ D+  + G   +    ++G P+P  +W      +I   ++K+ +D ++  L V   
Sbjct: 11  RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTE 70
Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS-PPEGPLK 318
           ++ D G+YT    N  G  + ++K+ +   P   P  PLK
Sbjct: 71  EQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLK 110

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
           S++      + EF+  V G+P+PT  W+ N   +I  D F+IV     + L++    + D
Sbjct: 320 SNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG---GSNLRILGVVKSD 376
Query: 284 SGIYTLAVKNSWGTDKGTAKVTV 306
            G Y    +N  G  + +A++ V
Sbjct: 377 EGFYQCVAENEAGNAQSSAQLIV 399

>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2 Protein Length = 121

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 410 PDRPGQP--TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANIT 466
           P  P  P  T++   +  ++L WT P  DG SP+ +YI+E      PW      V    T
Sbjct: 18  PHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKAT 76
Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           + +V  L     Y+FR+ AVN  G G+ SK +  V+
Sbjct: 77  SVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS 112

>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module) (Ig 18'), Nmr, Minimized Average Structure Length = 93

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF--DSKRGD 283
           IK++AG     +++ IG P PT  W   D          +  D KS+   +F   +KR D
Sbjct: 12  IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLV--DAKSSTTSIFFPSAKRAD 69
Query: 284 SGIYTLAVKNSWGTDKGTAKVTV 306
           SG Y L VKN  G D+   +V V
Sbjct: 70  SGNYKLKVKNELGEDEAIFEVIV 92

>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1 Length = 99

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTK 273
           +P   +  L D  VR G +    I V GEP P   WL N   +   + RF    +    +
Sbjct: 4   APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
           L++  ++RGD+G YT    N +G  +  A++ V
Sbjct: 64  LRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
           +SD +   GSN  +     G+P PT  WL N   + S++R +++  D    L+       
Sbjct: 300 ISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGD----LRFSKLSLE 355
Query: 283 DSGIYTLAVKNSWGTDKGTAKVTV 306
           DSG+Y    +N  GT   +A++ V
Sbjct: 356 DSGMYQCVAENKHGTIYASAELAV 379

>pdb|2CRZ|A Chain A, Solution Structure Of The Fifth Fniii Domain Of Human Fibronectin Type Iii Domain Containing Protein 3a Length = 110

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKP--KYGPWEKACIVPANITATSVPDLKEGEEYEFR 482
            + L W PP  DGGSPIS Y +E  P  K  P E   +   +    +V  L  G+ Y FR
Sbjct: 25  EIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPRE---VYQGSEVECTVSSLLPGKTYSFR 81
Query: 483 VIAVNKGGPG 492
           + A NK G G
Sbjct: 82  LRAANKMGFG 91

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 4/164 (2%)
Query: 231 GSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYT 288
           G+      +V   P  +  W  + + + +K+    K  +  +   L++  +   D G Y 
Sbjct: 115 GNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYN 174
Query: 289 LAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE 348
               N  GT      + + D+PS P G +K   +++++  + +  P   GG  I HY V+
Sbjct: 175 CTATNHIGTRFQEYILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVD 233
Query: 349 KMDMETGRW-VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGE 391
             ++ +  W +       T     NL     Y  RV AVN  G+
Sbjct: 234 VKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQ 277

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	616
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-75
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-42
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-14
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-06
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	1e-59
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	1e-40
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	9e-24
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	1e-17
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	4e-13
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	5e-58
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	7e-32
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	5e-15
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	4e-10
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	2e-56
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	9e-34
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	9e-18
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	1e-16
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	4e-07
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	1e-06
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-55
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-41
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-12
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-08
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	6e-08
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	4e-54
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	1e-35
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-27
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-26
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	6e-14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-44
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	7e-22
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-06
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	4e-06
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	4e-06
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	4e-44
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	1e-37
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	3e-23
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	1e-18
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	8e-11
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	7e-10
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	1e-04
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	3e-43
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	1e-30
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	1e-14
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	8e-09
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	2e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-43
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-26
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-26
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	8e-25
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-05
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	6e-41
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	3e-29
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	1e-25
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	3e-19
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	3e-39
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	3e-19
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	8e-10
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	5e-04
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	3e-37
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	1e-19
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	1e-08
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	4e-37
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	6e-15
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	3e-06
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-36
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	3e-32
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	9e-18
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-07
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	8e-07
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-36
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	3e-30
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	9e-20
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	4e-07
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	3e-36
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	2e-17
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	1e-07
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	3e-32
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-24
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	3e-09
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-08
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-08
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	7e-32
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	2e-19
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	5e-09
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	5e-09
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	8e-09
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	1e-31
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	3e-18
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	2e-10
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	1e-31
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	7e-25
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	4e-16
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	7e-09
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	9e-09
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-31
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	3e-30
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	5e-14
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-06
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	5e-06
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	2e-31
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	1e-26
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	4e-14
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	1e-09
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	2e-08
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	3e-31
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	8e-23
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	3e-10
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	3e-10
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	4e-10
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	5e-31
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	1e-25
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	4e-15
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	5e-11
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	2e-10
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	6e-31
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	1e-25
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	9e-15
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	4e-10
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	4e-10
2crm_A	120	Fibronectin type-III domain containing protein 3A;	7e-31
2crm_A	120	Fibronectin type-III domain containing protein 3A;	6e-25
2crm_A	120	Fibronectin type-III domain containing protein 3A;	5e-10
2crm_A	120	Fibronectin type-III domain containing protein 3A;	9e-08
2crm_A	120	Fibronectin type-III domain containing protein 3A;	9e-08
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	1e-30
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	2e-28
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	3e-12
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	2e-11
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	8e-11
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	4e-30
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	2e-28
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	2e-10
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	6e-10
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	8e-10
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	5e-30
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	5e-25
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	2e-08
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	8e-08
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	8e-08
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	3e-29
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	5e-25
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	5e-10
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	3e-09
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	5e-09
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	9e-29
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-28
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	4e-07
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-06
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	3e-06
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	1e-28
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	1e-19
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	1e-08
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	5e-08
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	5e-08
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-28
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	1e-27
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-15
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	1e-08
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	3e-27
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	1e-20
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	5e-09
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	1e-08
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	4e-07
2crz_A	110	Fibronectin type-III domain containing protein 3A;	1e-26
2crz_A	110	Fibronectin type-III domain containing protein 3A;	1e-25
2crz_A	110	Fibronectin type-III domain containing protein 3A;	2e-10
2crz_A	110	Fibronectin type-III domain containing protein 3A;	4e-09
2crz_A	110	Fibronectin type-III domain containing protein 3A;	1e-08
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	7e-26
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	2e-14
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	2e-08
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	7e-08
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	7e-08
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-25
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	4e-25
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	4e-17
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	2e-07
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	1e-05
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	1e-05
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	2e-24
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	2e-20
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	4e-11
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	4e-07
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	6e-07
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	3e-24
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	2e-21
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	1e-10
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	1e-06
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	1e-06
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	3e-24
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	1e-05
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-24
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-19
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-10
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-06
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-06
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	8e-24
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	5e-21
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	5e-12
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	5e-07
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	5e-07
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	3e-23
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	1e-07
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	6e-04
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	6e-23
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	6e-23
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	3e-22
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	2e-21
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	3e-07
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	8e-07
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	1e-06
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	7e-22
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	9e-14
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	1e-06
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	3e-04
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	5e-04
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	9e-22
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	2e-14
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	3e-07
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	3e-07
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	6e-04
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	9e-22
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	4e-18
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	2e-08
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	6e-07
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	6e-07
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	1e-21
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	6e-20
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	1e-08
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	2e-05
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	4e-05
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	2e-21
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	1e-09
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	3e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-21
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-19
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-05
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	1e-20
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	1e-18
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	4e-07
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	8e-05
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	6e-04
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	2e-20
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	3e-14
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	5e-19
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	3e-14
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	3e-14
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	1e-09
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	6e-08
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	9e-05
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	1e-18
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	2e-18
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	6e-06
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	3e-05
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	1e-04
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	1e-18
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	5e-16
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	2e-08
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	3e-05
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	3e-05
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	1e-18
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	2e-18
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	1e-14
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	6e-04
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	6e-04
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-18
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	5e-18
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	2e-10
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	8e-18
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	1e-17
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	3e-04
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	1e-17
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	3e-12
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	3e-17
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	1e-04
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	4e-17
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	4e-05
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	7e-17
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	6e-11
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	1e-10
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	6e-05
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	2e-16
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	6e-14
1y6k_R	214	Interleukin-10 receptor alpha chain; helix bundle,	2e-16
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	3e-16
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	1e-09
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	4e-16
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	8e-12
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	7e-16
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	4e-15
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	3e-08
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	2e-05
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	2e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	9e-16
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-09
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	9e-16
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	1e-15
2h41_A	95	Fibronectin; beta sandwich, cell adhesion, structu	1e-14
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-15
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-15
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	2e-15
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	1e-10
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	2e-15
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	4e-12
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	4e-04
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	2e-15
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	2e-05
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	4e-15
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	5e-11
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	4e-15
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	2e-11
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-15
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	5e-15
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	2e-11
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-15
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	5e-14
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-15
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-12
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	8e-15
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	8e-15
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	8e-15
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	5e-13
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	9e-15
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-14
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-14
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-14
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-09
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-08
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-14
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	2e-14
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	7e-11
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	2e-14
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	2e-09
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	3e-05
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	2e-14
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	2e-14
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	3e-14
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	9e-14
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	6e-07
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	3e-14
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-14
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	4e-14
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	3e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	4e-14
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	5e-14
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	5e-14
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	5e-10
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-13
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-11
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	6e-14
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	5e-10
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	1e-04
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	1e-13
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	3e-13
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	5e-04
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	1e-13
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	4e-06
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-13
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	2e-13
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	6e-11
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	1e-04
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-13
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-13
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	2e-13
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	3e-08
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-11
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	5e-13
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-13
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	6e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-06
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	7e-13
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	4e-09
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	9e-13
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	9e-12
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	3e-04
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	3e-04
2erj_C	247	Cytokine receptor common gamma chain; immune syste	9e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	9e-13
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	1e-12
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	1e-09
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-12
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-12
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	2e-12
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	3e-09
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	8e-05
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	2e-12
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	1e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-12
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-12
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-12
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-12
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-10
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-07
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-12
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	8e-09
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-12
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-12
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	8e-12
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	6e-08
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	2e-04
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	2e-04
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	9e-12
1iar_B	207	Protein (interleukin-4 receptor alpha chain); cyto	1e-11
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	1e-11
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	2e-07
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-11
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-08
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	2e-11
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	7e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-11
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-11
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	6e-10
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-11
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	5e-11
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	2e-09
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	7e-11
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	5e-10
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	7e-11
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	2e-10
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	7e-08
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	5e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	7e-11
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	9e-10
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-11
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	9e-11
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-10
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	8e-11
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-06
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-06
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	9e-11
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-10
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	4e-08
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-10
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	2e-10
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-10
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-10
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-09
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-10
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-09
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-08
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-10
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-10
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-10
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	4e-10
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	4e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-10
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-08
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-05
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	5e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-04
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-09
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-07
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	2e-09
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	2e-09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-09
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-07
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-09
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-09
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-08
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	5e-09
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-07
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	6e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-05
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	1e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-08
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	2e-08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-08
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-07
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-04
3og6_B	226	Interleukin 28 receptor, alpha (interferon, lambd	2e-08
2b5i_B	214	Interleukin-2 receptor beta chain; four-helix bund	2e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-05
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-08
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-07
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	2e-08
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	2e-05
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	8e-04
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	8e-04
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	2e-08
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	1e-06
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	3e-08
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-08
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-07
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-06
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	5e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-08
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	6e-08
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	6e-08
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-08
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-07
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	7e-08
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-05
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	7e-08
1k85_A	88	Chitinase A1; fibronectin type III domain, chitin	8e-08
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	8e-08
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	6e-06
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	9e-08
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-07
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-07
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	1e-07
3mpc_A	103	FN3-like protein; fibronectin, FN(III), unknown fu	1e-06
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	2e-07
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-07
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	7e-07
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-07
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-07
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	8e-04
3dlq_R	211	Interleukin-22 receptor subunit alpha-1; cytokine-	5e-07
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	5e-07
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	6e-07
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	8e-06
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	9e-07
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	8e-06
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	1e-06
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	1e-06
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	1e-06
3qt2_A	317	Interleukin-5 receptor subunit alpha; cytokine typ	7e-04
2ens_A	96	Advanced glycosylation END product-specific recept	1e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-06
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-04
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-06
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-06
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-04
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	9e-06
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	1e-05
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	4e-04
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	7e-04
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	1e-05
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	1e-05
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	2e-05
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	6e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-05
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	5e-05
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	1e-04
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	6e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	7e-05
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	8e-05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	9e-05
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	1e-04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-04
2dle_A	104	Receptor-type tyrosine-protein phosphatase ETA; pr	1e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	2e-04
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-04
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-04
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-04
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	4e-04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	5e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	8e-04
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	8e-04
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	8e-04
3up1_A	223	Interleukin-7 receptor subunit alpha; cytokine rec	9e-04

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  243 bits (623), Expect = 5e-75
 Identities = 68/335 (20%), Positives = 120/335 (35%), Gaps = 22/335 (6%)

Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK---KVSPYINRDQLSDIKVRAGSNF 234
           D+   +   +   A ++ G  +                + +P    +Q +      G+  
Sbjct: 69  DVKLSDSGRYDCEAASRIGGHQ---------KSMYLDIEYAPKFISNQ-TIYYSWEGNPI 118

Query: 235 EFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK 292
               +V   P  +  W  + + + +K+    K  +  +   L++  +   D G Y     
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178

Query: 293 NSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM 352
           N  GT      + + D+PS P G  K   +++++  + +  P   GG  I HY V+  ++
Sbjct: 179 NHIGTRFQEYILALADVPSSPYGV-KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEV 237

Query: 353 ETGRWVPM-GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD 411
            +  W  +      T     NL     Y  RV AVN  G+      +  I    P   P 
Sbjct: 238 ASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS--KIEIFQTLPVREPS 295

Query: 412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSV 470
            P              L  T    DGG+PI +YI++ + K          V  N     +
Sbjct: 296 PPS-IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIIL 353

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
             L+    YE ++ A N+ G  EP+     +  KP
Sbjct: 354 EHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKP 388

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  157 bits (398), Expect = 1e-42
 Identities = 62/417 (14%), Positives = 103/417 (24%), Gaps = 99/417 (23%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWL-------CNDITIISKDRFKIVNDDKSTKL 274
           QL +             +  GEPIP   W          +       R ++     S+ L
Sbjct: 6   QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSL 65

Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAP 334
            + D K  DSG Y     +  G  + +  + +      P+     +              
Sbjct: 66  HIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY---APKFISNQTIYY----------- 111

Query: 335 RDDGGTDILHYVVEKMDMETGRW------VPMGDVSGTYTRA---------ENLIEGHDY 379
             +G    +   V+     +  W      +P  + +   T +             +    
Sbjct: 112 SWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFG 171

Query: 380 NFRVKAVNKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKD 436
            +   A N IG       L              P  P    + +  +    + +  P   
Sbjct: 172 RYNCTATNHIGTRFQEYILALA---------DVPSSPYGVKIIELSQTTAKVSFNKPDSH 222

Query: 437 GGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSK 496
           GG PI  Y ++ K       K        T   + +L+    YE RV AVN  G G+ SK
Sbjct: 223 GGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSK 282

Query: 497 ASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNV 556
                T   R                                                  
Sbjct: 283 IEIFQTLPVR-------------------------------------------------- 292

Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
              P             K+   +   +GG+ I  Y V+ R +               
Sbjct: 293 EPSPPSIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNK 348

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 73.7 bits (181), Expect = 4e-14
 Identities = 42/285 (14%), Positives = 73/285 (25%), Gaps = 80/285 (28%)

Query: 1   APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNP------------------ 42
           AP     +        G  +    ++   P   + WR                       
Sbjct: 100 APKF-ISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKM 158

Query: 43  -LNLRPIWEK------C-AQTEGDT---------------PKG-KVLDL----------- 67
            L + P  +       C A     T               P G K+++L           
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNK 218

Query: 68  --IEGNHPI-------------WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG 112
               G  PI               K  ++ G      + +L     YE RV AVN  G G
Sbjct: 219 PDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQG 278

Query: 113 EPSDPTAPHIARAKKGKCYHLVGTLLKDSIYE-----QLKRSGLFDQFHL------CPIW 161
           + S          ++     + G       ++     Q        ++ +          
Sbjct: 279 DYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQ 338

Query: 162 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
               + +G+     +  L     YE ++ A N+ G  EP+     
Sbjct: 339 WLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 383

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 207
             K  ++ G      + +L     YE RV AVN  G G+ S      
Sbjct: 241 IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQ 287

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  196 bits (500), Expect = 1e-59
 Identities = 69/201 (34%), Positives = 98/201 (48%), Gaps = 8/201 (3%)

Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVS 364
            +D P PP+   K   +TK+S  L W  P  DGG+ I +Y+VEK +     +  +  +  
Sbjct: 2   AMDTPGPPQDL-KVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCH 60

Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
            T  + + L EG  Y FRV A N+ G  LP        +     RP  PG+ T+ D  ++
Sbjct: 61  KTSWKVDQLQEGCSYYFRVLAENEYGIGLPA---ETAESVKASERPLPPGKITLMDVTRN 117

Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKACIVPANITATSVPDLKEGEEYEFRV 483
            V L W  P+ DGGS I  YI+E + K    W         +T  ++  L +GEEY FRV
Sbjct: 118 SVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWAT--CATVKVTEATITGLIQGEEYSFRV 175

Query: 484 IAVNKGGPGEPSKASAPVTCK 504
            A N+ G  +P + S PV  K
Sbjct: 176 SAQNEKGISDPRQLSVPVIAK 196

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score =  145 bits (368), Expect = 1e-40
 Identities = 50/202 (24%), Positives = 71/202 (35%), Gaps = 50/202 (24%)

Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 468
            P  P    V +  K  V L W PP  DGGS I  YI+EK+              + T+ 
Sbjct: 5   TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSW 64

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPF 528
            V  L+EG  Y FRV+A N+ G G P++ +  V                           
Sbjct: 65  KVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKAS------------------------ 100

Query: 529 ITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAI 588
                                       P  P K    DV ++ + + W++P  +GGS I
Sbjct: 101 --------------------------ERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRI 134

Query: 589 KGYEVERRERTSGRWIKITPDP 610
            GY VE + + S +W       
Sbjct: 135 LGYIVEMQTKGSDKWATCATVK 156

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 98.2 bits (245), Expect = 9e-24
 Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 1/102 (0%)

Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
           V   + P PP G +   ++T++S +L W  P  DGG+ IL Y+VE     + +W     V
Sbjct: 97  VKASERPLPP-GKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATV 155

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD 405
             T      LI+G +Y+FRV A N+ G S P     P+ AKD
Sbjct: 156 KVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAKD 197

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 80.5 bits (199), Expect = 1e-17
 Identities = 38/163 (23%), Positives = 55/163 (33%), Gaps = 33/163 (20%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
           E     +   A T       KV  L EG  Y FRVLA N+ G G P++      A  +  
Sbjct: 46  ESTRKAYSTVA-TNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPL 104

Query: 129 KCYHLVGTLLKDS---------------------IYEQLKRSGLFDQFHLCPIWEKCAQT 167
               +    +  +                     +  Q K S           W  C   
Sbjct: 105 PPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDK---------WATC--A 153

Query: 168 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
                +  +  LI+G +Y FRV A N+ G  +P   + P IA+
Sbjct: 154 TVKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 67.8 bits (166), Expect = 4e-13
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
            PG P   +  +V K  + + W  P+ +GGS IK Y VE+RE T   +  +  +  +T
Sbjct: 5   TPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKT 62

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score =  193 bits (491), Expect = 5e-58
 Identities = 41/210 (19%), Positives = 63/210 (30%), Gaps = 10/210 (4%)

Query: 302 AKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG 361
           A +   D PS P           S+  +++  P   GG  IL Y  E   +    W    
Sbjct: 1   APLAQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKW 58

Query: 362 D-----VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQP 416
                           L     Y  R+ A+N  G           T   P   P  P   
Sbjct: 59  YDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT--QPVREPSAPKLE 116

Query: 417 TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEG 476
                  + + +       DGGSPI  Y++  +     W+    +P+      +  L   
Sbjct: 117 GQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWN 175

Query: 477 EEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
            EYE  V+A N+ G  + +           
Sbjct: 176 AEYEVYVVAENQQGKSKAAHFVFRTAAAHH 205

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score =  121 bits (306), Expect = 7e-32
 Identities = 40/216 (18%), Positives = 61/216 (28%), Gaps = 57/216 (26%)

Query: 406 PFGRPDRPGQPT--VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKA---C 459
           P  + D P  P+    +       +++  P+  GG PI +Y  E +      W       
Sbjct: 2   PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 61

Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQD 519
              +     ++  LK    Y  R+ A+N  G GE S AS     +P              
Sbjct: 62  KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS-EFKTQPV------------- 107

Query: 520 MTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQ 579
                                                P  P        D + IK+   +
Sbjct: 108 -----------------------------------REPSAPKLEGQMGEDGNSIKVNLIK 132

Query: 580 PISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
              +GGS I+ Y V  R   S  W      P  +  
Sbjct: 133 Q-DDGGSPIRHYLVRYRA-LSSEWKPEIRLPSGSDH 166

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 73.3 bits (180), Expect = 5e-15
 Identities = 24/148 (16%), Positives = 45/148 (30%), Gaps = 20/148 (13%)

Query: 72  HPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKC- 130
           H  W    +   +     ++ L     Y  R+ A+N  G GE S  +       ++    
Sbjct: 55  HSKWYDAKEASMEGIV-TIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAP 113

Query: 131 -YHLVGTLLKDSIYEQLKRSGLFDQFHLCPI-------------WEKCAQTEGDTPKGKV 176
                     +SI  ++      D     PI             W+   +    +    +
Sbjct: 114 KLEGQMGEDGNSI--KVNLIKQDD--GGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVML 169

Query: 177 LDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
             L    +YE  V+A N+ G  + +   
Sbjct: 170 KSLDWNAEYEVYVVAENQQGKSKAAHFV 197

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 58.7 bits (142), Expect = 4e-10
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 556 VPGKPSKP--EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
               PS P  +  +      ++++ +P + GG  I  Y+ E R      W     D    
Sbjct: 5   QADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 64

Query: 614 KTS 616
              
Sbjct: 65  SME 67

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score =  189 bits (481), Expect = 2e-56
 Identities = 43/214 (20%), Positives = 74/214 (34%), Gaps = 18/214 (8%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD------- 362
             PP  P   + ++  S  L W  PR+DG   ++  V  +M  +   W    D       
Sbjct: 2   TYPP-TPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 60

Query: 363 ----VSGTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPIT--AKDPFGRPDRPG 414
                 G    A   +L   H Y FR+ AV    ++      +               P 
Sbjct: 61  KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPE 120

Query: 415 QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY--GPWEKACIVPANITATSVPD 472
              + ++ +  V L W+         I+ Y    +P    G + KA I  A+  +  +  
Sbjct: 121 LLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP 180

Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
           L+    YEF++ + +     E S      T +P+
Sbjct: 181 LETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score =  127 bits (320), Expect = 9e-34
 Identities = 38/215 (17%), Positives = 58/215 (26%), Gaps = 60/215 (27%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY--GPWEKA-----------C 459
           P  P VT    + V L W  P+ + G PI  + ++ +       W+              
Sbjct: 5   PTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 63

Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQD 519
                    SV DLK    Y FR++AV      + S  SA    +P              
Sbjct: 64  SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP-------------- 109

Query: 520 MTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQ 579
                 +P                                P   E  +  +  + + W  
Sbjct: 110 --GAALDP-----------------------------MPVPELLEIEEYSETAVVLHWSL 138

Query: 580 PISNGGSAIKGYEVERRERTS-GRWIKITPDPIRT 613
                   I GY    R  +S G + K T +    
Sbjct: 139 ASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHA 173

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 81.4 bits (201), Expect = 9e-18
 Identities = 24/158 (15%), Positives = 42/158 (26%), Gaps = 18/158 (11%)

Query: 73  PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK----- 127
               K     G +    V DL   + Y FR+LAV      + S+ +A    +        
Sbjct: 57  YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPM 116

Query: 128 GKCYHLVGTLL-KDSIY---EQLKRSG---------LFDQFHLCPIWEKCAQTEGDTPKG 174
                L      + ++         +           +        + K           
Sbjct: 117 PVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSF 176

Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK 212
           K+  L     YEF++ + +     E S        R K
Sbjct: 177 KIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 77.9 bits (192), Expect = 1e-16
 Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 4/107 (3%)

Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVP 359
                 LD    PE   +    ++++  L W    D     I  Y        + G +  
Sbjct: 107 LQPGAALDPMPVPELL-EIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFK 165

Query: 360 MGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
                          L     Y F++++ +    S     +   T +
Sbjct: 166 ATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 155 FHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP-HIARAKK 213
            ++     K     G +    V DL   + Y FR+LAV      + S+ +A  ++     
Sbjct: 53  DNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAA 112

Query: 214 VSP 216
           + P
Sbjct: 113 LDP 115

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTS-GRWIKITPD 609
              P+ P  T +  + + ++W  P  N G  I  ++V+ R       W     +
Sbjct: 2   TYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTNDN 54

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  188 bits (479), Expect = 4e-55
 Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 4/234 (1%)

Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFD 237
            + + +   ++V A N+GG    +      +    K+      + +  +    G      
Sbjct: 68  SVTDDDATVYQVRATNQGGSVSGTASL--EVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125

Query: 238 INVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWG 296
           I   G+P P   W      I +   ++++     ++ +     +R D+G Y +  KN +G
Sbjct: 126 IPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG 185

Query: 297 TDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR 356
            D+ T ++ V D+P PP G  K S++++ S NL W  P  DGG+ I +Y+VEK      R
Sbjct: 186 IDQKTVELDVADVPDPPRGV-KVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAER 244

Query: 357 WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
           W+ +G    T     NL     Y FRV A NK G S P     P   K+   R 
Sbjct: 245 WLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRA 298

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  150 bits (381), Expect = 4e-41
 Identities = 70/312 (22%), Positives = 115/312 (36%), Gaps = 41/312 (13%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKI-VNDDKS 271
           ++P+  +++L ++ VR  SN      V G P P  +W      II    +++I       
Sbjct: 3   MAPHF-KEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS--PPEGPLKPSNIT---KSS 326
            +L +      D+ +Y +   N  G+  GTA + V        P+       +       
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 327 CNLE------------WRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLI 374
            +++            W+  +            + +D      V +     +      + 
Sbjct: 122 VSIKIPFSGKPDPVITWQ--KGQ----------DLIDNNGHYQVIVTRSFTSLVFPNGVE 169

Query: 375 EGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK 434
                 + V A N+ G          +   D    PD P    V+D  +D V+L WT P 
Sbjct: 170 RKDAGFYVVCAKNRFGID---QKTVELDVADV---PDPPRGVKVSDVSRDSVNLTWTEPA 223

Query: 435 KDGGSPISQYIIEKKPKY-GPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE 493
            DGGS I+ YI+EK       W +        T  +V +L     Y+FRVIA NK G  +
Sbjct: 224 SDGGSKITNYIVEKCATTAERWLRVGQARE--TRYTVINLFGKTSYQFRVIAENKFGLSK 281

Query: 494 PSKASAPVTCKP 505
           PS+ S P   K 
Sbjct: 282 PSEPSEPTITKE 293

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 36/186 (19%), Positives = 64/186 (34%), Gaps = 50/186 (26%)

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYN--- 526
           +  + + +   ++V A N+GG      AS  V    +   P   +  +  + A       
Sbjct: 66  IASVTDDDATVYQVRATNQGGSVS-GTASLEVEVPAKIHLPKTLE-GMGAVHALRGEVVS 123

Query: 527 ----------PFITLLFKNFVLDLNEGLK-----SMVKLSYIDNV--------------- 556
                     P IT      ++D N   +     S   L + + V               
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183

Query: 557 ---------------PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG 601
                          P  P   + +DV +D + + W +P S+GGS I  Y VE+   T+ 
Sbjct: 184 FGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAE 243

Query: 602 RWIKIT 607
           RW+++ 
Sbjct: 244 RWLRVG 249

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
           W +    +    +  V++L     Y+FRV+A NK G  +PS+P+ P I +  K   
Sbjct: 245 WLRVG--QARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRA 298

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
           W +    +    +  V++L     Y+FRV+A NK G  +PS+P+ P I +
Sbjct: 245 WLRVG--QARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITK 292

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  193 bits (491), Expect = 4e-54
 Identities = 79/471 (16%), Positives = 136/471 (28%), Gaps = 30/471 (6%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W+   +T  +T     L      H   +  A+ +  T        +     E  V A N 
Sbjct: 123 WDGGRETHLET--NFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENA 180

Query: 109 GGPGEPSDPTAPHIARAK-------KGKCYHLVGTLLKDSIYEQLKRSGLFDQFHL---- 157
            G           + + K              + ++LK +      +S +  ++++    
Sbjct: 181 LGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRT 240

Query: 158 --CPIWEKCA--QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 213
                W +     T        V DL    +Y FR+  + + G G  SD +        +
Sbjct: 241 KDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE 300

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT--IISKDRFKIVNDDKS 271
             P         I           + ++ + +P  E     I    ++  R+K    + +
Sbjct: 301 DRPSKAPSFWYKIDPSHTQG-YRTVQLVWKTLPPFEANG-KILDYEVTLTRWKSHLQNYT 358

Query: 272 TKLKVF-DSKRGDSGIYTLAVKNSWGT-DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNL 329
                   +   D  + TL V+N  G  D     +   D  +        +    +   +
Sbjct: 359 VNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWV 418

Query: 330 EWRAPRDDGGTDILHYVVEKMDMETGR-WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK 388
           EW  PR+     IL + V          W              NL E   Y   V  V  
Sbjct: 419 EWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYA 478

Query: 389 IGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWT-PPKKDGGSPISQYIIE 447
            G   P      I A      P +         GK+   LEW   P       I  Y I 
Sbjct: 479 DGPGSP----ESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIF 534

Query: 448 KKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
            +   G       V ++ T  ++  L     Y  R+ A    G  +  + +
Sbjct: 535 YRTIIGNETA-VNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  140 bits (355), Expect = 1e-35
 Identities = 61/399 (15%), Positives = 107/399 (26%), Gaps = 69/399 (17%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT------IISKDRFKIVNDDKSTKLKVF 277
               V+  SNF     +  + +       N I        I K+++ I+N   S+    F
Sbjct: 11  ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSV--TF 68

Query: 278 DSKRGDSGIYTLAVKNSWGTDKG--TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPR 335
                 +   T  +      ++      +     P  P+  L            EW   R
Sbjct: 69  TDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGR 127

Query: 336 DDGGTDILHYVV--EKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL 393
           +       ++ +  E    +        D   + T   + +   +    V+A N +G+  
Sbjct: 128 ETHL--ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT 185

Query: 394 PLVCQSPITAK-DPFGRPDRPGQPTVTD--WGKDHVDLEWTPPKKDGGSPISQYIIEKKP 450
                  I        +P+ P   +V +       + L WT P       I +Y I+ + 
Sbjct: 186 S----DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS-IKSVIILKYNIQYRT 240

Query: 451 KY-GPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 507
           K    W +        T +S  V DLK   EY FR+  + + G G  S  S   +     
Sbjct: 241 KDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE 300

Query: 508 VAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATD 567
             P                                                      +  
Sbjct: 301 DRPSK------------------------------------------APSFWYKIDPSHT 318

Query: 568 VDKDHIKIKWQQ-PISNGGSAIKGYEVERRERTSGRWIK 605
                +++ W+  P       I  YEV      S     
Sbjct: 319 QGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNY 357

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  115 bits (289), Expect = 3e-27
 Identities = 55/474 (11%), Positives = 116/474 (24%), Gaps = 94/474 (19%)

Query: 159 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYI 218
              +  A+ +  T        +     E  V A N  G           + + K   P  
Sbjct: 145 KFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPP-- 202

Query: 219 NRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD 278
                 ++ V         + +     P+ +   + I +    +++  +    +++   D
Sbjct: 203 -----HNLSVINSEELSSILKLTWTN-PSIK---SVIILKYNIQYRTKDASTWSQIPPED 253

Query: 279 SKRGDSGI----------YTLAV--KNSWGTDKG---TAKVTVLDIPSPPEGPLKP---- 319
           +    S            Y   +      G       + + + +     P          
Sbjct: 254 TASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKI 313

Query: 320 ---SNITKSSCNLEWRA-PRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIE 375
                    +  L W+  P  +    IL Y V     ++       + +   T+    + 
Sbjct: 314 DPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NYTVNATKLTVNLT 369

Query: 376 GHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKK 435
              Y   +   N +G+S      + +T      +   P          + + +EWT P++
Sbjct: 370 NDRYLATLTVRNLVGKSDA----AVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE 425

Query: 436 DGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
                I ++ +         +               +L E + Y   V  V   GPG P 
Sbjct: 426 SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE 485

Query: 496 KASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDN 555
                +    +                                                 
Sbjct: 486 ----SIKAYLKQAP---------------------------------------------- 495

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQ-PISNGGSAIKGYEVERRERTSGRWIKITP 608
            P K        V K+   ++W Q P+      I+ Y +  R            
Sbjct: 496 -PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVD 548

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score =  113 bits (283), Expect = 2e-26
 Identities = 45/353 (12%), Positives = 86/353 (24%), Gaps = 73/353 (20%)

Query: 276 VFDSKRGDSGIYTLAVKNSWGT---DKGTAKVTVLDIPSPPEGP-LKPSNITKSSCNLEW 331
            + +    +    +  +N+ G    D           P+PP    +  S    S   L W
Sbjct: 162 DYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTW 221

Query: 332 RAPRDDGGTDILHYVVEKMDMETGRW--VPMGDVSGTYTRAE--NLIEGHDYNFRVKAVN 387
             P       IL Y ++    +   W  +P  D + T +     +L    +Y FR++ + 
Sbjct: 222 TNPSIKSV-IILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMK 280

Query: 388 KIGESLPLVCQSPITAKDPFGRPDRP-----GQPTVTDWGKDHVDLEWTP-PKKDGGSPI 441
           + G+          +      RP +              G   V L W   P  +    I
Sbjct: 281 EDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKI 340

Query: 442 SQYIIEKKPKYGPWEKAC-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAP 500
             Y +        W+        N T  +V      + Y   +   N  G  + +  + P
Sbjct: 341 LDYEVT----LTRWKSHLQNYTVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIP 394

Query: 501 VTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKP 560
                                                                      P
Sbjct: 395 ACDFQ---------------------------------------------------ATHP 403

Query: 561 SKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
                     + + ++W  P  +    I  + V   +       +     +  
Sbjct: 404 VMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHR 456

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 73.9 bits (181), Expect = 6e-14
 Identities = 33/299 (11%), Positives = 75/299 (25%), Gaps = 62/299 (20%)

Query: 320 SNITKSSCNLEWRAPRDDGGTD-ILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHD 378
           SN T + C L+ +           + +      +   ++  +   + + T  +       
Sbjct: 19  SNFT-AVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ 77

Query: 379 YNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGG 438
               +    ++ ++   V    I +  P   P++P   +        +  EW   + +  
Sbjct: 78  LTCNILTFGQLEQN---VYGITIISGLP---PEKPKNLSCIVNEGKKMRCEWDGGR-ETH 130

Query: 439 SPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
              +  +  +   +   +         + T           E  V A N  G       +
Sbjct: 131 LETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 190

Query: 499 APVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPG 558
                                                            VK       P 
Sbjct: 191 FDPV-------------------------------------------YKVK-------PN 200

Query: 559 KPSKPEATDVD--KDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
            P      + +     +K+ W  P S     I  Y ++ R + +  W +I P+   +  
Sbjct: 201 PPHNLSVINSEELSSILKLTWTNP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 258

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  156 bits (397), Expect = 2e-44
 Identities = 38/205 (18%), Positives = 64/205 (31%), Gaps = 12/205 (5%)

Query: 198 GEPSDPTAPHIARAKKVS-PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT 256
              +  ++  + R   +  P +       +    G+       V   P  T  W  +   
Sbjct: 1   ATYAAASSALVPRGSHMYAPKLQGPV--AVYTWEGNQVNITCEVFAYPSATISWFRDGQL 58

Query: 257 IISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
           + S +    KI N   ++ L+V      D G Y     N  G +     +   D PS P 
Sbjct: 59  LPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPS 118

Query: 315 GPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKM----DMETGRWVPMGDVSG-TYTR 369
                     S+  +++  P   GG  IL Y  E      ++   +W    + S      
Sbjct: 119 IDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVT 176

Query: 370 AENLIEGHDYNFRVKAVNKIGESLP 394
              L     Y  R+ A+N  G    
Sbjct: 177 IVGLKPETTYAVRLAALNGKGLGEI 201

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 93.4 bits (232), Expect = 7e-22
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 7/104 (6%)

Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-----YGPWEKACIVP 462
             P  P    V  +      +++  P+  GG PI +Y  E +       +  W  A    
Sbjct: 112 DTPSSPSIDQVEPYS-STAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 170

Query: 463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
                T +  LK    Y  R+ A+N  G GE S AS   T   +
Sbjct: 171 MEGIVT-IVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVQ 213

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
            P  PS  +         ++++ +P + GG  I  Y+ E R      W     D    
Sbjct: 113 TPSSPSIDQVEPY-SSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 169

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
           W    +   +     ++ L     Y  R+ A+N  G GE S  +
Sbjct: 163 WYDAKEASMEGIV-TIVGLKPETTYAVRLAALNGKGLGEISAAS 205

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
           W    +   +     ++ L     Y  R+ A+N  G GE S  +
Sbjct: 163 WYDAKEASMEGIV-TIVGLKPETTYAVRLAALNGKGLGEISAAS 205

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  158 bits (401), Expect = 4e-44
 Identities = 40/325 (12%), Positives = 83/325 (25%), Gaps = 73/325 (22%)

Query: 291 VKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKM 350
           + +         +V       P    LK + +T +S + +W  P       +  Y V   
Sbjct: 1   MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGYRVRVT 56

Query: 351 DMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFG 408
             E    +   +++   +      L+    Y   V A+     S P              
Sbjct: 57  PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ-----GVVTTLE 111

Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 468
               P +  VTD  +  + + W          I+ + ++  P  G       +  ++ + 
Sbjct: 112 NVSPPRRARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRTIKPDVRSY 167

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPF 528
           ++  L+ G +Y+  +  +N            PV                           
Sbjct: 168 TITGLQPGTDYKIYLYTLNDNARSS------PVVIDASTA-------------------- 201

Query: 529 ITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAI 588
                                          PS         + + + WQ P     + I
Sbjct: 202 ----------------------------IDAPSNLRFLATTPNSLLVSWQPP----RARI 229

Query: 589 KGYEVERRERTSGRWIKITPDPIRT 613
            GY ++  +  S     +       
Sbjct: 230 TGYIIKYEKPGSPPREVVPRPRPGV 254

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score =  140 bits (354), Expect = 1e-37
 Identities = 44/219 (20%), Positives = 74/219 (33%), Gaps = 23/219 (10%)

Query: 287 YTLAVK--NSWGT-DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDIL 343
           Y ++V       T       VT L+  SPP    + ++ T+++  + WR   +     I 
Sbjct: 87  YEVSVYALKDTLTSRPAQGVVTTLENVSPPRR-ARVTDATETTITISWRTKTET----IT 141

Query: 344 HYVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPI 401
            + V+ +       +    +           L  G DY   +  +N    S P      I
Sbjct: 142 GFQVDAVPANGQTPIQR-TIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSP----VVI 196

Query: 402 TAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACI 460
            A       D P          + + + W PP     + I+ YII+ +     P E    
Sbjct: 197 DASTA---IDAPSNLRFLATTPNSLLVSWQPP----RARITGYIIKYEKPGSPPREVVPR 249

Query: 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
               +T  ++  L+ G EY   VIA+      EP     
Sbjct: 250 PRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGRK 288

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 99.1 bits (247), Expect = 3e-23
 Identities = 33/232 (14%), Positives = 56/232 (24%), Gaps = 67/232 (28%)

Query: 385 AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQY 444
           A +    S  L     +  + P      P     T      +  +WTPP       ++ Y
Sbjct: 2   AHHHHHHSSGL----EVLFQGP--AIPAPTDLKFTQVTPTSLSAQWTPP----NVQLTGY 51

Query: 445 IIEKKPKYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503
            +   PK      K   +  + ++  V  L    +YE  V A+       P++       
Sbjct: 52  RVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLE 111

Query: 504 KPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKP 563
                                                                   P + 
Sbjct: 112 NV----------------------------------------------------SPPRRA 119

Query: 564 EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
             TD  +  I I W+         I G++V+         I+ T  P     
Sbjct: 120 RVTDATETTITISWRTKTET----ITGFQVDAVPANGQTPIQRTIKPDVRSY 167

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 86.0 bits (213), Expect = 1e-18
 Identities = 39/252 (15%), Positives = 66/252 (26%), Gaps = 45/252 (17%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR 220
             K      D+    V  L+   +YE  V A+       P+      +       P    
Sbjct: 63  PMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENV--SPP---- 116

Query: 221 DQLSDIKVRAGSNFEFDI-------NVIG-----EPIPTKEWLCNDITIISKDRFKIVND 268
                 +V   +     I        + G      P   +  +   I       + I   
Sbjct: 117 ---RRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIK-PDVRSYTITGL 172

Query: 269 DKSTKLKVFDSKRGDSGIYTLAV--KNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSS 326
              T              Y + +   N          +        P   L+    T +S
Sbjct: 173 QPGTD-------------YKIYLYTLNDNARSS-PVVIDASTAIDAPSN-LRFLATTPNS 217

Query: 327 CNLEWRAPRDDGGTDILHYVVEKMDMETGRW--VPMGDVSGTYTRAENLIEGHDYNFRVK 384
             + W+ PR      I  Y+++     +     VP      T      L  G +Y   V 
Sbjct: 218 LLVSWQPPRA----RITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVI 273

Query: 385 AVNKIGESLPLV 396
           A+    +S PL+
Sbjct: 274 ALKNNQKSEPLI 285

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 62.1 bits (151), Expect = 8e-11
 Identities = 22/161 (13%), Positives = 39/161 (24%), Gaps = 15/161 (9%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
                   K      D+    V  L+   +YE  V A+       P+      +      
Sbjct: 57  PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENV--S 114

Query: 129 KCYHLVGTLL-KDSIYEQLKR-SGLFDQFHLC-----PIWEKCAQTEGDTPKGKVLDLIE 181
                  T   + +I    +  +     F +               + D     +  L  
Sbjct: 115 PPRRARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQP 174

Query: 182 GNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 216
           G  Y+  +  +N      P          AP   R    +P
Sbjct: 175 GTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTP 215

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 59.4 bits (144), Expect = 7e-10
 Identities = 21/151 (13%), Positives = 37/151 (24%), Gaps = 36/151 (23%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKG 128
                  + D     +  L  G  Y+  +  +N      P          AP   R    
Sbjct: 154 TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLR---- 209

Query: 129 KCYHLVGTLLKDSI-------------YE-QLKRSGLFDQFHLCPIWEKCAQTEGDTPKG 174
                      +S+             Y  + ++ G        P  E   +      + 
Sbjct: 210 -----FLATTPNSLLVSWQPPRARITGYIIKYEKPGS-------PPREVVPRPRPGVTEA 257

Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
            +  L  G +Y   V+A+      EP     
Sbjct: 258 TITGLEPGTEYTIYVIALKNNQKSEPLIGRK 288

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 60  PKGKV----LDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 115
           P+ ++    +   +   P  E   +      +  +  L  G +Y   V+A+      EP 
Sbjct: 225 PRARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL 284

Query: 116 DPTA 119
               
Sbjct: 285 IGRK 288

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score =  152 bits (387), Expect = 3e-43
 Identities = 40/197 (20%), Positives = 67/197 (34%), Gaps = 12/197 (6%)

Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVS 364
           V D+P+ P+              + W     D  + ILHY ++         W    +  
Sbjct: 2   VQDVPNAPKLTG--ITCQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKV 58

Query: 365 GTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDR-PGQPTVTDW 421
                +    +    +Y FRV A NKIG S P       T +     P + P        
Sbjct: 59  PNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPD--VPFKNPDNVVGQGT 116

Query: 422 GKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYGP--WEKACIVPANITATSVPDLKEGEE 478
             +++ + WTP  + +  +P   Y +  K       WE   I         + D     +
Sbjct: 117 EPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVK 176

Query: 479 YEFRVIAVNKGGPGEPS 495
           Y  +V+A+N  G    +
Sbjct: 177 YLIKVVAINDRGESNVA 193

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score =  117 bits (296), Expect = 1e-30
 Identities = 40/210 (19%), Positives = 59/210 (28%), Gaps = 54/210 (25%)

Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WEKACIVPANI 465
             P+ P    +T    D  ++ W     D  SPI  Y I+    + P  W+ A     N 
Sbjct: 4   DVPNAPKLTGITC-QADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNT 61

Query: 466 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEY 525
            ++ V  +     Y FRVIA NK G   PS  S   T +P    P               
Sbjct: 62  DSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPD--VP--------------- 104

Query: 526 NPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQ-PISNG 584
                                             P        + +++ I W   P    
Sbjct: 105 -------------------------------FKNPDNVVGQGTEPNNLVISWTPMPEIEH 133

Query: 585 GSAIKGYEVE-RRERTSGRWIKITPDPIRT 613
            +    Y V  +R+  +  W        R 
Sbjct: 134 NAPNFHYYVSWKRDIPAAAWENNNIFDWRQ 163

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 23/146 (15%), Positives = 46/146 (31%), Gaps = 16/146 (10%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK--GKCYH 132
           W+   +   +T    V+ +     Y FRV+A NK G   PS  +     +         +
Sbjct: 51  WDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDN 110

Query: 133 LVGT-LLKDSIY---EQLKRSG----------LFDQFHLCPIWEKCAQTEGDTPKGKVLD 178
           +VG     +++      +               + +      WE     +       + D
Sbjct: 111 VVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIAD 170

Query: 179 LIEGNQYEFRVLAVNKGGPGEPSDPT 204
                +Y  +V+A+N  G    +   
Sbjct: 171 QPTFVKYLIKVVAINDRGESNVAAEE 196

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 55.1 bits (133), Expect = 8e-09
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR 220
           W+   +   +T    V+ +     Y FRV+A NK G   PS  +       +   P+ N 
Sbjct: 51  WDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSC--TTQPDVPFKN- 107

Query: 221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
               ++  +        + +   P+P  E 
Sbjct: 108 --PDNVVGQGTEPNN--LVISWTPMPEIEH 133

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 3/62 (4%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRE-RTSGRWIKITPDPIRTK 614
           VP  P     T    D  +I W+Q   +  S I  Y ++     T   W         T 
Sbjct: 5   VPNAPKLTGIT-CQADKAEIHWEQQ-GDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTD 62

Query: 615 TS 616
           +S
Sbjct: 63  SS 64

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  164 bits (416), Expect = 3e-43
 Identities = 64/471 (13%), Positives = 138/471 (29%), Gaps = 72/471 (15%)

Query: 159 PIWEKCAQTEGDTPKGKV-LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 217
           PIW           + ++ +     N Y+     +  G  G  +      +      +P+
Sbjct: 108 PIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPH 167

Query: 218 INRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL--CNDITIISKDRFKIVNDDKST-KL 274
               ++ +++V AG    F  + IG  +          D+        K+ +  +     
Sbjct: 168 FL--RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASF 225

Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAP 334
            V ++ + D+G Y   ++   G         V+  P  P  P + +++  +   ++  A 
Sbjct: 226 NVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNAN 285

Query: 335 RDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK--IGES 392
             +G   I+   VE     +G W     V  T  +  +L    +Y   V        G  
Sbjct: 286 SINGDGPIVAREVEYCT-ASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTG 344

Query: 393 LPLVCQSPITAKDPFGRPDR-PGQPTVTDWGKDHVDLEWTPPKKDGGS-PISQYIIEKKP 450
            P      +  +     P R P +  V +     + + W P   +          +    
Sbjct: 345 SPG---PALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCY 401

Query: 451 KYGP-----WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
           + G       E +     +    ++ +L        ++I +N  G  E    S  +  + 
Sbjct: 402 QVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE----SQELIVQ- 456

Query: 506 RFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKP-E 564
                          T ++                               +PG       
Sbjct: 457 ---------------TDED-------------------------------LPGAVPTESI 470

Query: 565 ATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
                ++ I ++W++P    G  I  YE+  +  +S        +     +
Sbjct: 471 QGSTFEEKIFLQWREPTQTYGV-ITLYEITYKAVSSFDPEIDLSNQSGRVS 520

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  114 bits (286), Expect = 1e-26
 Identities = 45/371 (12%), Positives = 82/371 (22%), Gaps = 70/371 (18%)

Query: 238 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297
           + V   P+    W  +                   +L +         +    + +    
Sbjct: 98  VKVNNGPLGNPIWNISG---------DPTRTWNRAELAISTFWPNFYQVIFEVITSGHQG 148

Query: 298 DKGTAKVTVLDIPSPPEGPL-KPSNIT---KSSCNLEWRAPRDDGGTDILHYVVEKMDME 353
                +V VL  P        +  N+          +  A       D L      +   
Sbjct: 149 YLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA 208

Query: 354 TGRWVPMGDVSGTYTR--AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD 411
             + + +             N  +     +R     + G        S          P 
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG-----ISNYAELVVKEPPV 263

Query: 412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVP 471
               P +   G  ++ ++      +G  PI    +E     G W      P + T+  + 
Sbjct: 264 PIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWND--RQPVDSTSYKIG 321

Query: 472 DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITL 531
            L    EYE  V+    G  G        +  + +   P                     
Sbjct: 322 HLDPDTEYEISVLLTRPGEGG-TGSPGPALRTRTKCADP--------------------- 359

Query: 532 LFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIK-G 590
                                       P K E  +V    I I+W+    N        
Sbjct: 360 -------------------------MRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYN 394

Query: 591 YEVERRERTSG 601
             V    +  G
Sbjct: 395 LTVHYCYQVGG 405

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  112 bits (281), Expect = 4e-26
 Identities = 81/613 (13%), Positives = 157/613 (25%), Gaps = 139/613 (22%)

Query: 2   PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPK 61
                  + +++++AG    F  + IG  V        G  +   P+ E           
Sbjct: 164 RTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI---------- 213

Query: 62  GKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG--------- 112
                          K   +        V++  + +  ++R +   +GG G         
Sbjct: 214 ---------------KVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258

Query: 113 -EPSDPTAPHIARAKKGKCYHLV---------GTLLKDSIYEQLKRSGLFDQFHLCPIWE 162
            EP  P AP    +       +          G ++   +                  W 
Sbjct: 259 KEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS----------WN 308

Query: 163 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQ 222
              +   D+   K+  L    +YE  VL    G  G    P      R K   P      
Sbjct: 309 --DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGG-TGSPGPALRTRTKCADPMRG--- 362

Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
              ++V    + +  I    EP       C+   +     +++   ++  +   +D++  
Sbjct: 363 PRKLEVVEVKSRQITIRW--EPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENS 420

Query: 283 DSGI----------YTLAVK--NSWGTDKGTAKVTVL----DIPSPPEGPLKPSNITKSS 326
                          ++ +   N  G     ++  ++    D+P          +  +  
Sbjct: 421 HPQHTITNLSPYTNVSVKLILMNPEGR--KESQELIVQTDEDLPGAVPTESIQGSTFEEK 478

Query: 327 CNLEWRAPRDDGGTDILHYVVE---------KMDMETGRWVPMGDVSGTYTRAENLIEGH 377
             L+WR P    G  I  Y +          ++D+           + T+     L  G 
Sbjct: 479 IFLQWREPTQTYG-VITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGT 537

Query: 378 DYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK--DHVDLEWTPPKK 435
            Y+F ++A    G   P    +          P  P     T   +  + V +   P   
Sbjct: 538 TYSFTIRASTAKGFGPP----ATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPA-H 592

Query: 436 DGGSPISQYIIE----------------------------KKPKYGPWEKACIVPANITA 467
             G+P+S Y I                                    +  A     ++ A
Sbjct: 593 SRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQA 652

Query: 468 TS--------------VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVID 513
                              L   + Y     A ++             T       PV +
Sbjct: 653 AQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPE 712

Query: 514 QYALQDMTAQEYN 526
                D T +   
Sbjct: 713 PEKQTDHTVKGTK 725

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score =  108 bits (270), Expect = 8e-25
 Identities = 58/470 (12%), Positives = 120/470 (25%), Gaps = 93/470 (19%)

Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDI 226
           +        V++  + +  ++R +   +GG G  +            ++P     QL+ +
Sbjct: 218 SRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPP----QLASV 273

Query: 227 KVRAGS-NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG 285
                      +      PI  +E         +   +       ST  K+         
Sbjct: 274 GATYLWIQLNANSINGDGPIVAREVEYCT----ASGSWNDRQPVDSTSYKIGHLDPDTE- 328

Query: 286 IYTLAV----KNSWGTDKGTAKVTVLDIPSPPEGP---LKPSNITKSSCNLEWRAPRDDG 338
            Y ++V        GT      +      + P      L+   +      + W     + 
Sbjct: 329 -YEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNV 387

Query: 339 GT-DILHYVV----EKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGE 391
                 +  V    +    E  R     D   ++ +    NL    + + ++  +N  G 
Sbjct: 388 TRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGR 447

Query: 392 SLPLVCQSPITAKDPFGRPDRPGQP-TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP 450
                    +  +     P             ++ + L+W  P +  G  I+ Y I  K 
Sbjct: 448 KES----QELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGV-ITLYEITYKA 502

Query: 451 KYGPWEKACI--------VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
                 +  +           N T      L  G  Y F + A    G G P+       
Sbjct: 503 VSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA----TNQ 558

Query: 503 CKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSK 562
                             T                                   P  P+ 
Sbjct: 559 FT----------------TKIS-------------------------------APSMPAY 571

Query: 563 PEATDVDK--DHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
              T +++  + + +  +    + G+ +  Y++   E    R  K T   
Sbjct: 572 ELETPLNQTDNTVTVMLKPA-HSRGAPVSVYQIVVEEERPRRTKKTTEIL 620

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 43/295 (14%), Positives = 71/295 (24%), Gaps = 79/295 (26%)

Query: 331 WRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLI---EGHDYNFRVKAVN 387
                   G   ++  V    +    W   GD + T+ RAE  I     + Y    + + 
Sbjct: 84  SSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVIT 143

Query: 388 K-----IGESLPLVCQSPITAKDPFGRPD----RPGQPTV---TDWGKDHVDLEWTPPKK 435
                 +      V   P T    F R        GQ      +  G+            
Sbjct: 144 SGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGI 203

Query: 436 DGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
           D      + I     +                 +V +  + +  ++R +   +GG G  S
Sbjct: 204 DVRDAPLKEIKVTSSRRFIAS-----------FNVVNTTKRDAGKYRCMIRTEGGVG-IS 251

Query: 496 KASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDN 555
             +  V  +P                                                  
Sbjct: 252 NYAELVVKEP-------------------------------------------------- 261

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
            P   + P+   V   ++ I+      NG   I   EVE     SG W    P  
Sbjct: 262 -PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCT-ASGSWNDRQPVD 314

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  157 bits (397), Expect = 6e-41
 Identities = 45/358 (12%), Positives = 93/358 (25%), Gaps = 51/358 (14%)

Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGT 340
              SG+      N  G      K     +P  P   L+ + +      ++W +  +    
Sbjct: 132 NECSGVKKCCS-NGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISI- 189

Query: 341 DILHYVVE--------KMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES 392
           + + YVV+          + +   W  +   +    +  ++     Y FRV AVN  G  
Sbjct: 190 EPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTR 249

Query: 393 LPLVCQSPITAKDPFGRPDRPGQPTVTDW-----GKDHVDLEWTPPKKDGGSPISQYIIE 447
                     +      P  P    + +      G   V + W  P++    P+  Y + 
Sbjct: 250 GFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYKVF 308

Query: 448 KKPK-------YGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAP 500
                          ++         +  +  L+   +Y   + A+   G      A   
Sbjct: 309 WSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVS 368

Query: 501 VTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKP 560
           +           +Q                       L          +L +    P +P
Sbjct: 369 LHFTSTHATNNKEQ-----------------------LVKTRKGGIQTQLPFQRRRPTRP 405

Query: 561 SKPEATDVDKDHIKIK--WQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
            +  A       +++K  W++        +  Y V               +     T 
Sbjct: 406 LEVGAPFYQDGQLQVKVYWKKT---EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTH 460

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  122 bits (306), Expect = 3e-29
 Identities = 50/470 (10%), Positives = 115/470 (24%), Gaps = 101/470 (21%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
           E +   W+  AQT     + ++ D+     Y+FRV AVN  G    + P+    +     
Sbjct: 208 EDDATHWQTVAQT--TDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPS 265

Query: 129 KC-----YHLVGTLLKDSIYEQLK--------------------RSGLFDQFHLCPIWEK 163
                    L  + +       +                        +  +  +    ++
Sbjct: 266 APPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKR 325

Query: 164 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD-Q 222
              T+G      +  L     Y   + A+   G              +   +    +  +
Sbjct: 326 RKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVK 385

Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI----------------ISKDRFKIV 266
                ++    F+         +    +    + +                +        
Sbjct: 386 TRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACA 445

Query: 267 NDDKSTKLKVFDSKRGDSGI---------YTLAVKNSWGTDKGTAKVTVLDIPS------ 311
           ++  +           +  I         Y + V+         A+      P       
Sbjct: 446 HNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKG 505

Query: 312 ---------------PPEGPLKPSNIT--------KSSCNLEWRAPRDDGGTDILHYVVE 348
                            +   KP N++          + +  W+  + +    +  + V 
Sbjct: 506 KSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVT 565

Query: 349 KMDMETGR---WVPMGDVSG--------TYTRAENLIEGHDYNFRVKAVNKIGESLPLVC 397
             ++ T      +P   +S               NL     Y   V+ +   GE      
Sbjct: 566 WAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPA--- 622

Query: 398 QSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE 447
            +  T + P   P    +  +      H    + P  +  G PI   ++ 
Sbjct: 623 -TIKTFRTPELPPSSAHRSHLKHRHPHH----YKPSPERYGKPIPNPLLG 667

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score =  111 bits (277), Expect = 1e-25
 Identities = 56/418 (13%), Positives = 115/418 (27%), Gaps = 91/418 (21%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR 220
           W+  AQT     + ++ D+     Y+FRV AVN  G    + P+    +     +P    
Sbjct: 214 WQTVAQT--TDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPA 271

Query: 221 DQLSDIKVRAGSNFEFDINVIGEP------------IPTKEWLCNDITIISKDRFKIVND 268
           + L        S+    + ++ +             +     + +   + +K + +   D
Sbjct: 272 N-LRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTD 330

Query: 269 DKSTKLKVFDSKRGDSGIYTLAVK--NSWG---------------------------TDK 299
                + +   +      Y + ++    WG                           T K
Sbjct: 331 GFQNSVILEKLQPDCD--YVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRK 388

Query: 300 GTAKVTVLDIPSPPEGPLKPSNI----TKSSCNLEWRAPRDDGGTDILHYVVEKM----- 350
           G  +  +      P  PL+         +    + W+   D        Y V        
Sbjct: 389 GGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVN---RYHVRWFPEACA 445

Query: 351 -DMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL---------------- 393
            +  TG     G     Y   ++L     Y   V+ +     S                 
Sbjct: 446 HNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKG 505

Query: 394 ----PLVCQSPITAKDPF--GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE 447
               P+ C             +P+      +           W   K +   P++ + + 
Sbjct: 506 KSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVT 565

Query: 448 KKPKYGPWE----------KACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
                              ++ I+P++    +VP+L+    Y   V  +  GG G  +
Sbjct: 566 WAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT 623

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 90.8 bits (224), Expect = 3e-19
 Identities = 43/358 (12%), Positives = 89/358 (24%), Gaps = 75/358 (20%)

Query: 304 VTVLDIPSPPEGP-------LKPSNITKSSCNLEWRAPRDDGGTDILHYVVE------KM 350
                 PS P  P          ++    +  + W  P +     + HY V         
Sbjct: 258 FRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDI-PVHHYKVFWSWMVSSK 316

Query: 351 DMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFG 408
            +   +        G       E L    DY   ++A+   G++     +  +       
Sbjct: 317 SLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHA 376

Query: 409 RPDRPGQPTVT--------------------------DWGKDHVDLEWTPPKKDGGSPIS 442
             ++                                   G+  V + W          ++
Sbjct: 377 TNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT---EDPTVN 433

Query: 443 QYIIEKKPKYGPWEKACIVPANITATS-----VPDLKEGEEYEFRVIAVNKGGPGEPSKA 497
           +Y +   P+     +     A+   T      + DL    +Y+  V  +      +   A
Sbjct: 434 RYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSK---A 490

Query: 498 SAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVP 557
            A     P   A     +                        +    ++   LS +   P
Sbjct: 491 EAVFFTTPPCSALKGKSHK----------------------PIGCLGEAGHVLSKVLAKP 528

Query: 558 GKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
              S               W+   +N    + G++V   E T+       P+ I +++
Sbjct: 529 ENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQS 586

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score =  150 bits (380), Expect = 3e-39
 Identities = 41/272 (15%), Positives = 78/272 (28%), Gaps = 18/272 (6%)

Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305
              E + +     S   FK    +         +     G  +   +  +          
Sbjct: 269 AGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASM 328

Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE--KMDMETGRWVPMGD- 362
               P      L  +    +   L W  P+D GG + + Y V   +   E+G   P    
Sbjct: 329 PCTRPPSAPHYLT-AVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEAS 387

Query: 363 ---------VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRP 413
                    ++ T     +L    +Y F V+A N +   +                   P
Sbjct: 388 VRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVT---SRSFRTASVSINQTEP 444

Query: 414 GQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDL 473
            +  +       + + W+ P       + +Y +  + K        +      + ++ DL
Sbjct: 445 PKVRLEGRSTTSLSVSWSIPPPQQS-RVWKYEVTYRKKGDSNSYN-VRRTEGFSVTLDDL 502

Query: 474 KEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
                Y  +V A+ + G G  SK     T  P
Sbjct: 503 APDTTYLVQVQALTQEGQGAGSKVHEFQTLSP 534

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 90.2 bits (223), Expect = 3e-19
 Identities = 35/228 (15%), Positives = 55/228 (24%), Gaps = 62/228 (27%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY------ 452
               A  P  RP               V+L WTPP+  GG     Y +  +  +      
Sbjct: 322 PQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGEC 381

Query: 453 ---GPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 507
                  +    P  +T TS  V DL+    Y F V A N       S++    +     
Sbjct: 382 GPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTAS----- 436

Query: 508 VAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATD 567
                                                        +     +P K     
Sbjct: 437 ---------------------------------------------VSINQTEPPKVRLEG 451

Query: 568 VDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
                + + W  P       +  YEV  R++       +      + T
Sbjct: 452 RSTTSLSVSWSIPPPQQSR-VWKYEVTYRKKGDSNSYNVRRTEGFSVT 498

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 60.6 bits (146), Expect = 8e-10
 Identities = 24/191 (12%), Positives = 44/191 (23%), Gaps = 32/191 (16%)

Query: 33  HVDWRAGGNPLNLRPIWEK--CAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKV 90
            + W    +      I     C Q   ++ +    +             +T        V
Sbjct: 350 ELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSV-----TV 404

Query: 91  LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLL-KDSIY----EQ 145
            DL     Y F V A N       S           + +   +        S+       
Sbjct: 405 SDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIP 464

Query: 146 LKRSGLFDQFHLCPI-------WEKCAQTEGDTPKGKVL-----DLIEGNQYEFRVLAVN 193
             +           +        +K      +  + +       DL     Y  +V A+ 
Sbjct: 465 PPQQS--------RVWKYEVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALT 516

Query: 194 KGGPGEPSDPT 204
           + G G  S   
Sbjct: 517 QEGQGAGSKVH 527

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 13/61 (21%), Positives = 14/61 (22%), Gaps = 10/61 (16%)

Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD----------PTAPHIARAKKVS 215
                     V DL     Y F V A N       S            T P   R +  S
Sbjct: 394 PHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRS 453

Query: 216 P 216
            
Sbjct: 454 T 454

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score =  136 bits (343), Expect = 3e-37
 Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 22/207 (10%)

Query: 311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
            P E  +  +    +S  ++W AP+    + I  Y++      +        + G     
Sbjct: 2   GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSY 58

Query: 371 --ENLIEGHDYNFRVKAVNKIGESLPL------------VCQSPITAKDPFGRPDRPGQP 416
             + L  G  Y  ++ ++ + G                 V  + +T +     P      
Sbjct: 59  TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118

Query: 417 TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIVPANITATSVPDLKE 475
           +VT+       + W          +S + +E +    G   +   +P+  T+ ++PDL  
Sbjct: 119 SVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLP 174

Query: 476 GEEYEFRVIAVNKGGPGEPSKASAPVT 502
           G +Y   V  +++ G      +++  T
Sbjct: 175 GRKYIVNVYQISEDGEQSLILSTSQTT 201

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 86.3 bits (213), Expect = 1e-19
 Identities = 32/200 (16%), Positives = 61/200 (30%), Gaps = 43/200 (21%)

Query: 412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSV 470
                T T    +   ++W  P+    S IS+YI+  +PK      K   +P ++ + ++
Sbjct: 4   VEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTI 60

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFIT 530
             LK G  YE ++I++ + G  E ++     T     V           +T +       
Sbjct: 61  KGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTS-------NTVTGETTPF--- 110

Query: 531 LLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKG 590
                                     P   +    T++      + W          + G
Sbjct: 111 -------------------------SPLVATSESVTEITASSFVVSWVSA----SDTVSG 141

Query: 591 YEVERRERTSGRWIKITPDP 610
           + VE      G   +    P
Sbjct: 142 FRVEYELSEEGDEPQYLDLP 161

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 54.3 bits (130), Expect = 1e-08
 Identities = 22/154 (14%), Positives = 44/154 (28%), Gaps = 23/154 (14%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD-------PTAPHIARAKK 127
             K A   G      +  L  G  YE +++++ + G  E +         + P  +    
Sbjct: 45  RWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVT 104

Query: 128 GKCYHLVGTLLKD-SIYEQLKRS---------GLFDQFHLC------PIWEKCAQTEGDT 171
           G+       +    S+ E    S              F +           +        
Sbjct: 105 GETTPFSPLVATSESVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTA 164

Query: 172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
               + DL+ G +Y   V  +++ G       T+
Sbjct: 165 TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTS 198

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score =  135 bits (342), Expect = 4e-37
 Identities = 38/196 (19%), Positives = 65/196 (33%), Gaps = 16/196 (8%)

Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
           +        P+  L+ S+ T+++ +L WR P          Y +  +     +      V
Sbjct: 1   INAGTDLDNPKD-LEVSDPTETTLSLRWRRPVAK----FDRYRLTYVSPSGKKNEMEIPV 55

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK 423
             T      L  G +Y   + A     +S P      I           P   + +D  +
Sbjct: 56  DSTSFILRGLDAGTEYTISLVAEKGRHKSKPTT----IKGSTV---VGSPKGISFSDITE 108

Query: 424 DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRV 483
           +   + WTPP+    S +  Y +   P  G       V  + T T +  L  G +Y   +
Sbjct: 109 NSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNI 164

Query: 484 IAVNKGGPGEPSKASA 499
           I+V      EP     
Sbjct: 165 ISVKGFEESEPISGIL 180

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 72.5 bits (178), Expect = 6e-15
 Identities = 35/207 (16%), Positives = 57/207 (27%), Gaps = 63/207 (30%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
            D P    V+D  +  + L W  P     +   +Y +      G   +   +P + T+  
Sbjct: 7   LDNPKDLEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEM-EIPVDSTSFI 61

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFI 529
           +  L  G EY   ++A            S P T K                         
Sbjct: 62  LRGLDAGTEYTISLVAEKGRH------KSKPTTIKGS----------------------- 92

Query: 530 TLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIK 589
                                     V G P     +D+ ++   + W  P S     + 
Sbjct: 93  -------------------------TVVGSPKGISFSDITENSATVSWTPPRSR----VD 123

Query: 590 GYEVERRERTSGRWIKITPDPIRTKTS 616
            Y V     T G    +T D  +T+T 
Sbjct: 124 SYRVSYVPITGGTPNVVTVDGSKTRTK 150

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1 Length = 186

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 17/142 (11%), Positives = 40/142 (28%), Gaps = 21/142 (14%)

Query: 76  EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKGK 129
           +   +   D+    +  L  G +Y   ++A       +P+         +P         
Sbjct: 48  KNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGIS----- 102

Query: 130 CYHLVGTLLKDSIYEQ-LKRSGLFDQFHL-----CPIWEKCAQTEGDTPKGKVLDLIEGN 183
                  + ++S            D + +               +G   + K++ L+ G 
Sbjct: 103 ----FSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGV 158

Query: 184 QYEFRVLAVNKGGPGEPSDPTA 205
            Y   +++V      EP     
Sbjct: 159 DYNVNIISVKGFEESEPISGIL 180

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  139 bits (351), Expect = 2e-36
 Identities = 61/351 (17%), Positives = 97/351 (27%), Gaps = 53/351 (15%)

Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSPYIN 219
               D       +L  G +Y   V  V       P           P   R   + P   
Sbjct: 52  VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGP--- 108

Query: 220 RDQLSDIKVR--AGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKV 276
                 ++V      + +     V   P+  +E +       S +   + N    T+   
Sbjct: 109 ----DTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTE--- 161

Query: 277 FDSKRGDSGIYTLAVK--NSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAP 334
                     Y ++V           T               +  S+IT +S  + W AP
Sbjct: 162 ----------YVVSVSSVYEQHE--STPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP 209

Query: 335 RDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGES 392
           R      I  Y +               V  +       NL  G +Y   + A+N   ES
Sbjct: 210 R----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREES 265

Query: 393 LPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY 452
                  P+         D P    V       + + W  P       +  Y I      
Sbjct: 266 -------PLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAP----AVTVRYYRITYGETG 314

Query: 453 G-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           G    +   VP + +  ++  LK G +Y   V AV   G    S  S P++
Sbjct: 315 GNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPAS--SKPIS 363

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score =  127 bits (320), Expect = 3e-32
 Identities = 54/344 (15%), Positives = 98/344 (28%), Gaps = 57/344 (16%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYT 368
            SPP      +N       + W         DI  Y +        +   +   V    +
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 369 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 426
               +NL  G +YN  V  V    ES+P       T          P     T+ G D +
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVP----ISDTIIPA---VPPPTDLRFTNIGPDTM 111

Query: 427 DLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIA 485
            + W PP       ++ +++   P           +  +  A  + +L  G EY   V +
Sbjct: 112 RVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSS 168

Query: 486 VNKGGPGEPSKA------SAP--VTCKP--------RFVAP--VIDQYALQ----DMTAQ 523
           V +     P +        +P  +             ++AP   I  Y ++      + +
Sbjct: 169 VYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGR 228

Query: 524 EYNPFITLLFKNFVL-DLNEGLK-------------SMVKLSYIDNVPGKPSKPEATDVD 569
                +     +  L +L  G +             S + +     V   P   E     
Sbjct: 229 PREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAAT 288

Query: 570 KDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
              + I W  P       ++ Y +   E      ++    P   
Sbjct: 289 PTSLLISWDAP----AVTVRYYRITYGETGGNSPVQEFTVPGSK 328

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 84.5 bits (209), Expect = 9e-18
 Identities = 49/339 (14%), Positives = 88/339 (25%), Gaps = 57/339 (16%)

Query: 80  QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLK 139
               D       +L  G +Y   V  V       P   T            +  +G    
Sbjct: 52  VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNIGP--- 108

Query: 140 DSIYEQLK----RSGLFDQFHL------CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRV 189
           D++  ++      S     F +                        + +L+ G +Y   V
Sbjct: 109 DTM--RVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSV 166

Query: 190 LAVNKGGPGEPS------DPTAPHIARAKKVSPYINRDQLSDIKVR----AGSNFEFDIN 239
            +V +     P          +P       ++        +   V       +   + I 
Sbjct: 167 SSVYEQHESTPLRGRQKTGLDSPTGIDFSDITA-------NSFTVHWIAPRATITGYRIR 219

Query: 240 VIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK--NSWGT 297
               P         D    S++   + N    T+             Y +++   N    
Sbjct: 220 H--HPEHFSGRPREDRVPHSRNSITLTNLTPGTE-------------YVVSIVALNGREE 264

Query: 298 DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW 357
                      +   P   L+    T +S  + W AP       + +Y +   +      
Sbjct: 265 SP-LLIGQQSTVSDVPR-DLEVVAATPTSLLISWDAP----AVTVRYYRITYGETGGNSP 318

Query: 358 VPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLP 394
           V    V G+ + A    L  G DY   V AV   G+S  
Sbjct: 319 VQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPA 357

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 17/145 (11%), Positives = 32/145 (22%), Gaps = 12/145 (8%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
             +     +  +         + +L  G +Y   ++A+N                     
Sbjct: 222 PEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQ----STVSD 277

Query: 129 KCYHL-VGTLLKDSIYEQ-LKRSGLFDQFHLC------PIWEKCAQTEGDTPKGKVLDLI 180
               L V      S+       +     + +           +     G      +  L 
Sbjct: 278 VPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLK 337

Query: 181 EGNQYEFRVLAVNKGGPGEPSDPTA 205
            G  Y   V AV   G    S    
Sbjct: 338 PGVDYTITVYAVTGRGDSPASSKPI 362

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 15/163 (9%), Positives = 36/163 (22%), Gaps = 32/163 (19%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKG 128
                          + +L+ G +Y   V +V +     P          +P        
Sbjct: 138 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFS-- 195

Query: 129 KCYHLVGTLLKDSIYEQL---KRSGLFDQFHL------CPIWEKCAQTEGDTPKGKVLDL 179
                   +  +S    +           + +           +  +         + +L
Sbjct: 196 -------DITANSF--TVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNL 246

Query: 180 IEGNQYEFRVLAVNKGGPGEPSD------PTAPHIARAKKVSP 216
             G +Y   ++A+N                  P        +P
Sbjct: 247 TPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATP 289

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  139 bits (351), Expect = 2e-36
 Identities = 56/350 (16%), Positives = 108/350 (30%), Gaps = 54/350 (15%)

Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSPYIN 219
               D       +L  G +Y   V  V       P       +           ++    
Sbjct: 53  VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITD--- 109

Query: 220 RDQLSDIKV-----RAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKL 274
               S I +      + +   + I V+         +  D    S   + +   +     
Sbjct: 110 ----SSIGLRWTPLNSSTIIGYRITVV--AAGEGIPIFEDFVDSSVGYYTVTGLEPGID- 162

Query: 275 KVFDSKRGDSGIYTLAVK--NSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWR 332
                       Y ++V    + G    T       +P P +  L+ +NI   +  + W 
Sbjct: 163 ------------YDISVITLINGGESAPTTLTQQTAVPPPTD--LRFTNIGPDTMRVTWA 208

Query: 333 APRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIG 390
            P      D+ +++V    ++    V    +S +       NL+ G +Y   V +V +  
Sbjct: 209 PPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQH 265

Query: 391 ESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP 450
           ES PL      T        D P     +D   +   + W  P+    + I+ Y I   P
Sbjct: 266 ESTPLRG-RQKTG------LDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHP 314

Query: 451 KYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           ++     +   VP +  + ++ +L  G EY   ++A+N            
Sbjct: 315 EHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQ 364

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score =  121 bits (306), Expect = 3e-30
 Identities = 55/342 (16%), Positives = 101/342 (29%), Gaps = 58/342 (16%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-VSGTYT 368
            SPP      +N       + W         DI  Y +        +   + + V    +
Sbjct: 3   LSPPTNLHLEANPDTGVLTVSWERSTTP---DITGYRITTTPTNGQQGNSLEEVVHADQS 59

Query: 369 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 426
               +NL  G +YN  V  V    ES+P+   S     +      +    +  D     +
Sbjct: 60  SCTFDNLSPGLEYNVSVYTVKDDKESVPI---SDTIIPE----VPQLTDLSFVDITDSSI 112

Query: 427 DLEWTPPKKDGGSPISQYIIE-KKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIA 485
            L WTP      S I  Y I       G       V +++   +V  L+ G +Y+  VI 
Sbjct: 113 GLRWTPL---NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVIT 169

Query: 486 VNKGGPGEPSKASAPVTCKP----------------RFVAP---VIDQYAL--QDMTAQE 524
           +  GG   P+  +      P                 +  P    +  + +    +  +E
Sbjct: 170 LINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEE 229

Query: 525 YNPFITLLFKN--FVLD--------------LNEGLKSMVKLSYIDNVPGKPSKPEATDV 568
               +++   +   VL               + E  +S             P+  + +D+
Sbjct: 230 DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDI 289

Query: 569 DKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
             +   + W  P     + I GY +           +    P
Sbjct: 290 TANSFTVHWIAP----RATITGYRIRHHPEHFSGRPREDRVP 327

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 90.6 bits (225), Expect = 9e-20
 Identities = 53/354 (14%), Positives = 91/354 (25%), Gaps = 62/354 (17%)

Query: 70  GNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIA 123
                         D       +L  G +Y   V  V       P       +       
Sbjct: 43  NGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDL 102

Query: 124 RAKKGKCYHLVGTLLKDSIYEQLK----RSGLFDQFHLC------PIWEKCAQTEGDTPK 173
                        +   SI   L+     S     + +        I       +     
Sbjct: 103 SFV---------DITDSSI--GLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGY 151

Query: 174 GKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSPYINRDQLSDIK 227
             V  L  G  Y+  V+ +  GG   P+          P   R   + P         ++
Sbjct: 152 YTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGP-------DTMR 204

Query: 228 V--RAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDS 284
           V      + +     V   P+  +E +       S +   + N    T+           
Sbjct: 205 VTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTE----------- 253

Query: 285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILH 344
             Y ++V + +   + T               +  S+IT +S  + W APR      I  
Sbjct: 254 --YVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPR----ATITG 307

Query: 345 YVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLV 396
           Y +               V  +       NL  G +Y   + A+N   ES  L+
Sbjct: 308 YRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI 361

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 21/165 (12%), Positives = 41/165 (24%), Gaps = 23/165 (13%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
                I       +       V  L  G  Y+  V+ +  GG   P+  T          
Sbjct: 133 AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPP-- 190

Query: 129 KCYHL-VGTLLKDSIYEQLK----RSGLFDQFHLC------PIWEKCAQTEGDTPKGKVL 177
               L    +  D++  ++      S     F +                        + 
Sbjct: 191 --TDLRFTNIGPDTM--RVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 246

Query: 178 DLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 216
           +L+ G +Y   V +V +     P          +P       ++ 
Sbjct: 247 NLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITA 291

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score =  133 bits (337), Expect = 3e-36
 Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 18/202 (8%)

Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM 360
             + + +++P P +  L   +IT SS  L W        + I+ Y +  +    G  +  
Sbjct: 15  VPRGSHMEVPQPTD--LSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIFE 69

Query: 361 GDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTV 418
             V  +        L  G DY+  V  V   GES P    + +T +        P     
Sbjct: 70  DFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTP----TTLTQQTA---VPPPTDLRF 122

Query: 419 TDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITATSVPDLKEGE 477
           T+ G D + + W PP       ++ +++   P     + A + +  +  A  + +L  G 
Sbjct: 123 TNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGT 179

Query: 478 EYEFRVIAVNKGGPGEPSKASA 499
           EY   V +V +     P +   
Sbjct: 180 EYVVSVSSVYEQHESTPLRGRQ 201

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 80.3 bits (198), Expect = 2e-17
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEK 457
           S +  +       +P   +  D     + L WTP      S I  Y I            
Sbjct: 12  SGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL---NSSTIIGYRITVVAAGEGIPIF 68

Query: 458 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
              V +++   +V  L+ G +Y+  V  V  GG   P+  + 
Sbjct: 69  EDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQ 110

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 21/153 (13%), Positives = 36/153 (23%), Gaps = 27/153 (17%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHI 122
                I       +       V  L  G  Y+  V  V  GG   P+          P  
Sbjct: 60  AAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTD 119

Query: 123 ARAKKGKCYHLVGTLLKDSIYEQLK----RSGLFDQFHLC------PIWEKCAQTEGDTP 172
            R            +  D++  ++      S     F +                     
Sbjct: 120 LR---------FTNIGPDTM--RVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDN 168

Query: 173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
              + +L+ G +Y   V +V +     P     
Sbjct: 169 AVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ 201

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score =  119 bits (301), Expect = 3e-32
 Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 5/111 (4%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY---GPW 455
           S  T    +  P+ P    +TD     V L WTP   D  SPI+++IIE +      G W
Sbjct: 6   SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGD-DNNSPITKFIIEYEDAMHKPGLW 64

Query: 456 EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
                V    T     +L     Y FRV+AVN  G   PS+AS     K  
Sbjct: 65  HHQTEVSGTQTTA-QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKAS 114

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 97.8 bits (244), Expect = 2e-24
 Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEK--MDME 353
               G     V D+P+PP    + ++    S  L W  P DD  + I  +++E      +
Sbjct: 3   SGSSGPTPAPVYDVPNPPFDL-ELTDQLDKSVQLSWT-PGDDNNSPITKFIIEYEDAMHK 60

Query: 354 TGRWVPMGDVSGTYTRA-ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD--PFGRP 410
            G W    +VSGT T A  NL    +Y+FRV AVN IG+SLP         K   P   P
Sbjct: 61  PGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNP 120

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
           VP  P   E TD     +++ W     +  S I  + +E  +      +      +    
Sbjct: 16  VPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQ 74

Query: 616 S 616
           +
Sbjct: 75  T 75

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 90  VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 125
            L+L     Y FRV+AVN  G   PS+ +  ++ +A
Sbjct: 78  QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 211
            L+L     Y FRV+AVN  G   PS+ +  ++ +A
Sbjct: 78  QLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score =  118 bits (298), Expect = 7e-32
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY------ 452
             I++  P   P  P    +++ G   V L++ P   DG + IS++++E +         
Sbjct: 7   GTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEE 65

Query: 453 -GPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
                +    P   +   VPDL     Y FR+  VN  G   PS+ S  +    
Sbjct: 66  WLLIHQLSNEPDARSME-VPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQ 118

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 12/109 (11%)

Query: 296 GTDKGTAKVTV---LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM 352
           G+   +  ++     ++P PP      SNI   S  L++R P  DG T I  ++VE    
Sbjct: 1   GSSGSSGTISSGVPPELPGPPTNL-GISNIGPRSVTLQFR-PGYDGKTSISRWLVEAQVG 58

Query: 353 ETGRW-------VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
             G             +         +L     Y+FR++ VN +G S P
Sbjct: 59  VVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPP 107

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 75  WEKCAQ--TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 121
           W    Q   E D    +V DL     Y FR+  VN  G   PS P+   
Sbjct: 66  WLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 114

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 161 WEKCAQ--TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 207
           W    Q   E D    +V DL     Y FR+  VN  G   PS P+   
Sbjct: 66  WLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKI 114

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
           +PG P+    +++    + ++++    +G ++I  + VE +    G  
Sbjct: 17  LPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEG 63

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score =  121 bits (306), Expect = 1e-31
 Identities = 36/205 (17%), Positives = 60/205 (29%), Gaps = 15/205 (7%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPMGDVSGT 366
            +                  +  W  P        + Y V+            + D    
Sbjct: 3   HMDLGAPQNPNAKAAGSRKIHFNWLPPSGK----PMGYRVKYWIQGDSESEAHLLDSKVP 58

Query: 367 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 426
                NL    DY  +V A    GE       S ++ +     P  PG+           
Sbjct: 59  SVELTNLYPYCDYEMKVCAYGAQGEGPY---SSLVSCRTHQEVPSEPGRLAFNVVSSTVT 115

Query: 427 DLEWTPPKKDGGSPISQYII------EKKPKYGPWEKACIVPANITATSVPDLKEGEEYE 480
            L W  P +  G  I+ Y +      +     GP +K  +         + +L+E + Y 
Sbjct: 116 QLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR 174

Query: 481 FRVIAVNKGGPGEPSKASAPVTCKP 505
           + V A N  G G   +A   +  +P
Sbjct: 175 YTVKARNGAGWGPEREAIINLATQP 199

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 83.3 bits (206), Expect = 3e-18
 Identities = 32/204 (15%), Positives = 55/204 (26%), Gaps = 55/204 (26%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
           P  P     G   +   W PP          Y ++   +     +A ++ + + +  + +
Sbjct: 9   PQNPNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTN 64

Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLL 532
           L    +YE +V A    G G     S+ V+C+                T QE        
Sbjct: 65  LYPYCDYEMKVCAYGAQGEGPY---SSLVSCR----------------THQE-------- 97

Query: 533 FKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYE 592
                                  VP +P +     V     ++ W +P    G  I  YE
Sbjct: 98  -----------------------VPSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYE 133

Query: 593 VERRERTSGRWIKITPDPIRTKTS 616
           V                 +     
Sbjct: 134 VCYGLVNDDNRPIGPMKKVLVDNP 157

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 24/177 (13%), Positives = 49/177 (27%), Gaps = 18/177 (10%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHL- 133
             +    +   P  ++ +L     YE +V A    G G  S   +    +    +   L 
Sbjct: 47  ESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLA 106

Query: 134 VGTLLKDSI----------------YEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVL 177
              +                     YE +    + D        +K            + 
Sbjct: 107 FNVVSSTVTQLSWAEPAETNGEITAYE-VCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIE 165

Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNF 234
           +L E   Y + V A N  G G   +       + K+         +  +  ++G ++
Sbjct: 166 NLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDY 222

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score =  117 bits (296), Expect = 1e-31
 Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIV 461
                   D PG+P   +  +  V L+W  P+  GG  I+ YI+EK+      W KA   
Sbjct: 4   HHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFS 63

Query: 462 PANITATSVPDLKEGEEYEFRVIAVNK-GGPGEPSKASAPVTCKPRFVA 509
                  +V  L E   YEFRVIA N  G    PS+ S  +TC+    A
Sbjct: 64  NILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 98.6 bits (246), Expect = 7e-25
 Identities = 35/101 (34%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
             PP  P  P NIT+ +  L+W  P   GG  I  Y+VEK D+  GRW+     +     
Sbjct: 11  IDPPGKP-VPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 69

Query: 370 A--ENLIEGHDYNFRVKAVNKIGE-SLPLVCQSPITAKDPF 407
                L E   Y FRV A N  G  S P      IT +D  
Sbjct: 70  FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 110

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 18/61 (29%), Positives = 29/61 (47%)

Query: 555 NVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTK 614
           +    P KP   ++ +  + +KW +P   GG  I  Y VE+R+  +GRW+K     I   
Sbjct: 9   SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILEN 68

Query: 615 T 615
            
Sbjct: 69  E 69

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W K   T G      +++  +  +  W K   +     +  V  L E   YEFRV+A N 
Sbjct: 31  WAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNA 90

Query: 109 -GGPGEPSDPTAPHIAR 124
            G    PS+P+     R
Sbjct: 91  AGAISPPSEPSDAITCR 107

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK-GGPGEPSDPTAPHIAR 210
           W K   +     +  V  L E   YEFRV+A N  G    PS+P+     R
Sbjct: 57  WLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  122 bits (308), Expect = 2e-31
 Identities = 45/190 (23%), Positives = 71/190 (37%), Gaps = 13/190 (6%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
              P+  L+  + T +S +LEW     +     + Y     +      VP G    T T 
Sbjct: 105 IDAPKN-LRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTT 163

Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 429
             +L+ G +Y   + AV    +S+P    + + A+      D P    VT   +  + L 
Sbjct: 164 LTDLVPGTEYGVGISAVMNSKQSIP----ATMNARTE---LDSPRDLMVTASSETSISLI 216

Query: 430 WTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG 489
           WT        PI  Y I   P  G   +   VP + T+ ++ DL+ G EY   + A    
Sbjct: 217 WTKAS----GPIDHYRITFTPSSGISSEV-TVPRDRTSYTLTDLEPGAEYIISITAERGR 271

Query: 490 GPGEPSKASA 499
                S   A
Sbjct: 272 QQSLESTVDA 281

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score =  119 bits (300), Expect = 3e-30
 Identities = 53/323 (16%), Positives = 82/323 (25%), Gaps = 78/323 (24%)

Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG 355
           G   G   + V      P   +   +++ +   +EW  PR      +L Y +     E G
Sbjct: 4   GISGGGGGIPV---IDGPTQ-ILVRDVSDTVAFVEWTPPRAKVDFILLKYGLV--GGEGG 57

Query: 356 RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQ 415
           +         +    + L  G  Y   + AV    ES      S           D P  
Sbjct: 58  KTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDA----SSTQFTTE---IDAPKN 110

Query: 416 PTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVP---ANITATSVPD 472
             V       +DLEW   +    +   +Y +      G      +VP      T T++ D
Sbjct: 111 LRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTD 166

Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLL 532
           L  G EY   + AV             P T   R                       T  
Sbjct: 167 LVPGTEYGVGISAVMNSKQSI------PATMNAR-----------------------T-- 195

Query: 533 FKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYE 592
                                      P     T   +  I + W +   +G   I  Y 
Sbjct: 196 -----------------------ELDSPRDLMVTASSETSISLIWTKA--SG--PIDHYR 228

Query: 593 VERRERTSGRWIKITPDPIRTKT 615
           +     +        P    + T
Sbjct: 229 ITFTPSSGISSEVTVPRDRTSYT 251

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 71.8 bits (176), Expect = 5e-14
 Identities = 30/247 (12%), Positives = 68/247 (27%), Gaps = 40/247 (16%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKV 214
            +   + +    +  V  L  G++YE  + AV      + S      +  AP   R    
Sbjct: 57  GKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSR 116

Query: 215 SPYINRDQLSDIKVR------AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND 268
           +        + + +           ++   + +      +  +   I      +  + + 
Sbjct: 117 TA-------TSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIG--PTTKTTLTDL 167

Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTVLDIPSPPEGPLKPSNITKSSC 327
              T+             Y + +     + +   A +        P   L  +  +++S 
Sbjct: 168 VPGTE-------------YGVGISAVMNSKQSIPATMNARTELDSPRD-LMVTASSETSI 213

Query: 328 NLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVN 387
           +L W          I HY +                  T     +L  G +Y   + A  
Sbjct: 214 SLIWTKASG----PIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAER 269

Query: 388 KIGESLP 394
              +SL 
Sbjct: 270 GRQQSLE 276

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 30/163 (18%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKG 128
            +   + +    +  V  L  G++YE  + AV      + S      +  AP   R    
Sbjct: 57  GKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLR---- 112

Query: 129 KCYHLVGTLLKDSIYEQLKRS-GLFDQFHLC--------PIWEKCAQTEGDTPKGKVLDL 179
                VG+    S+  +   S     ++ +                +  G T K  + DL
Sbjct: 113 -----VGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDL 167

Query: 180 IEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKVSP 216
           + G +Y   + AV       P+      +  +P        S 
Sbjct: 168 VPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSE 210

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 26/137 (18%), Positives = 40/137 (29%), Gaps = 20/137 (14%)

Query: 80  QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIARAKKGKCYHL 133
           +  G T K  + DL+ G +Y   + AV       P+      +  +P             
Sbjct: 154 KGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLM--------- 204

Query: 134 VGTLLKDSIYEQ-LKRSGLFDQFHLC----PIWEKCAQTEGDTPKGKVLDLIEGNQYEFR 188
           V    + SI     K SG  D + +                D     + DL  G +Y   
Sbjct: 205 VTASSETSISLIWTKASGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIIS 264

Query: 189 VLAVNKGGPGEPSDPTA 205
           + A         S   A
Sbjct: 265 ITAERGRQQSLESTVDA 281

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score =  116 bits (293), Expect = 2e-31
 Identities = 25/108 (23%), Positives = 41/108 (37%)

Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVP 462
                  P  P  P +T  G   + L+W+ P          YI+E + +   +       
Sbjct: 1   GSSGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYD 60

Query: 463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
               A +V +L+   +Y+F+VIA N  G   PS+     TC     + 
Sbjct: 61  GEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score =  103 bits (259), Expect = 1e-26
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 2/107 (1%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV-PMGDV 363
           +    PS P  P   +    +  +L+W  P      + + Y++E  +  +G    P  D 
Sbjct: 3   SGSSGPSMPASP-VLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG 61

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
                  +NL     Y F+V A N  G+S P       T  D     
Sbjct: 62  EDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 67.8 bits (166), Expect = 4e-14
 Identities = 14/59 (23%), Positives = 21/59 (35%)

Query: 555 NVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
           + P  P+ P  T      + ++W +P          Y +E  E TSG   K   D    
Sbjct: 6   SGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL 64

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 38  AGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGN 97
           AG   L+L+  W K + T  D     +L++ E       K     G+     V +L    
Sbjct: 19  AGITWLSLQ--WSKPSGTPSDEGISYILEMEEETSGYGFKPKYD-GEDLAYTVKNLRRST 75

Query: 98  QYEFRVLAVNKGGPGEPSDPTAPHIAR 124
           +Y+F+V+A N  G   PS+        
Sbjct: 76  KYKFKVIAYNSEGKSNPSEVVEFTTCP 102

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
            V +L    +Y+F+V+A N  G   PS+            S 
Sbjct: 67  TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score =  117 bits (294), Expect = 3e-31
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WE 456
                      P+ P +PT++   +  V + W P   +GG PI  + +E K       W 
Sbjct: 7   GSQPDHGRLSPPEAPDRPTISTASETSVYVTWIPRG-NGGFPIQSFRVEYKKLKKVGDWI 65

Query: 457 KAC-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            A   +P +  +  +  L++G  Y+FRV A+N  G  EPS  S P     
Sbjct: 66  LATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 93.2 bits (232), Expect = 8e-23
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 6/115 (5%)

Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMET 354
           G+         L  P  P+ P   S  +++S  + W  PR +GG  I  + VE K   + 
Sbjct: 4   GSSGSQPDHGRLSPPEAPDRP-TISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKV 61

Query: 355 GRWVPMGD-VSGTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
           G W+     +  +    E   L +G  Y FRV+A+N +GES P     P      
Sbjct: 62  GDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 75  WEKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 125
           W              ++  L +G  Y+FRV A+N  G  EPS P+ P++   
Sbjct: 64  WILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 161 WEKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 211
           W              ++  L +G  Y+FRV A+N  G  EPS P+ P++   
Sbjct: 64  WILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRE-RTSGRWIKITPDPIRTK 614
            P  P +P  +   +  + + W     NGG  I+ + VE ++ +  G WI  T     ++
Sbjct: 17  PPEAPDRPTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR 75

Query: 615 TS 616
            S
Sbjct: 76  LS 77

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score =  115 bits (291), Expect = 5e-31
 Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 1/109 (0%)

Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIV 461
           +    G    P   TV D       L+W PP + G   I  Y++E   +    W  A   
Sbjct: 2   SSGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKE 61

Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
           P      +V DL  G    FRV+ VN  G  EP+    PVT +    + 
Sbjct: 62  PVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score =  100 bits (251), Expect = 1e-25
 Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 302 AKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG 361
                    S P+      ++T ++  L+WR P   G   I  Y+VE     +  WVP  
Sbjct: 1   GSSGSSGPTSAPQHL-TVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPAN 59

Query: 362 D--VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPG 414
              V       ++L  G    FRV  VN  G S P     P+T ++        G
Sbjct: 60  KEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRES---GPSSG 111

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 70.9 bits (174), Expect = 4e-15
 Identities = 15/60 (25%), Positives = 20/60 (33%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
               P      DV      +KW+ P   G   I GY VE     S  W+    +P+    
Sbjct: 8   PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 67

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 16/56 (28%), Positives = 21/56 (37%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
           W    +   +     V DL  G +  FRV+ VN  G  EP+    P   R    S 
Sbjct: 55  WVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 15/50 (30%), Positives = 20/50 (40%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
           W    +   +     V DL  G +  FRV+ VN  G  EP+    P   R
Sbjct: 55  WVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 104

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  115 bits (290), Expect = 6e-31
 Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIV 461
                     P   TV       V + W PP   G + +  Y++E   +    W  A   
Sbjct: 1   GSSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKD 60

Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
             + T  ++  L    +   RV AVN  G  EP   S P+  K 
Sbjct: 61  LIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE 104

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  100 bits (251), Expect = 1e-25
 Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTY 367
            SPP   L   ++T ++  + WR P   G   +  YV+E     T  W+      +  T 
Sbjct: 8   TSPP-TLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66

Query: 368 TRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
                L        RVKAVN  G S P     PI  K+ 
Sbjct: 67  FTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKES 105

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 69.7 bits (171), Expect = 9e-15
 Identities = 12/60 (20%), Positives = 21/60 (35%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
               P+      V    + ++W+ P   G + + GY +E     +  WI    D I    
Sbjct: 7   GTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTK 66

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 14/56 (25%), Positives = 20/56 (35%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
           W    +   D  K  +  L    +   RV AVN  G  EP   + P + +    S 
Sbjct: 54  WIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSS 109

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 17/76 (22%), Positives = 24/76 (31%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W            G VL+        W    +   D  K  +  L    +   RV AVN 
Sbjct: 28  WRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNA 87

Query: 109 GGPGEPSDPTAPHIAR 124
            G  EP   + P + +
Sbjct: 88  AGASEPKYYSQPILVK 103

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score =  115 bits (291), Expect = 7e-31
 Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG 355
           G+       T  D P  P  P     I   S  + W  P+D+GG  I  YVVE  +   G
Sbjct: 4   GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63

Query: 356 -RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPG 414
            +W  +   +      + L  G  Y  RV  ++  G+S        +  + P       G
Sbjct: 64  NKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVS---ESLLVQTPAVSGPSSG 120

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 99.0 bits (247), Expect = 6e-25
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 8/116 (6%)

Query: 390 GESLPLVCQSPITAKDPFGRPDRPGQPTVT-DWGKDHVDLEWTPPKKDGGSPISQYIIEK 448
           G S         T  D   +P  P +P+V          + W PPK +GG+ I++Y++E 
Sbjct: 1   GSSGSSGVVEFTTCPD---KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEM 57

Query: 449 K--PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
                   WE                L  G  Y  RV  ++ GG    S++    T
Sbjct: 58  AEGSNGNKWEMIYSGAT--REHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 111

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 556 VPGKPSKPEAT-DVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG-RWIKITPDPIRT 613
            PG P KP     +     KI W  P  NGG+ I  Y VE  E ++G +W  I     R 
Sbjct: 17  KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATRE 76

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 121
           WE      G T +     L  G  Y  RV  ++ GG    S+     
Sbjct: 66  WEMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 207
           WE      G T +     L  G  Y  RV  ++ GG    S+     
Sbjct: 66  WEMIY--SGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQ 110

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  115 bits (289), Expect = 1e-30
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 4/116 (3%)

Query: 294 SWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME 353
           S G+   +  + ++D P PP   +K  ++   +  L W  P+DDG   I  Y ++K D +
Sbjct: 2   SSGSSGASIDIQIIDRPGPP-QIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKK 60

Query: 354 TGRWVPMGD-VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVC--QSPITAKDP 406
           +  W  + +    T      L+ G++Y FRV + N  G S       +S + A+D 
Sbjct: 61  SMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDG 116

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  108 bits (272), Expect = 2e-28
 Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK-PKYGPWEKACIVPANIT 466
            RP  P    + D   ++V L WTPPK DG + I+ Y I+K   K   W          +
Sbjct: 16  DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTS 75

Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
           AT + +L  G EY FRV + N  G  E +  +       R
Sbjct: 76  AT-ITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIAR 114

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTK 614
            PG P   +  DV  +++ + W  P  +G +AI GY +++ ++ S  W  +     RT 
Sbjct: 17  RPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTS 75

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCY 131
           W              + +L+ GN+Y FRV + N  G  E +  T      A+ GK Y
Sbjct: 64  WFTVI-EHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKIY 119

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 217
           W              + +L+ GN+Y FRV + N  G  E +  T      A+    Y
Sbjct: 64  WFTVI-EHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKIY 119

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score =  113 bits (285), Expect = 4e-30
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 4/101 (3%)

Query: 408 GRPDRPGQP--TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC-IVPAN 464
             P  P  P  T++   +  ++L WT P  DG SP+ +YI+E      PW      V   
Sbjct: 16  QLPHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPK 74

Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            T+ +V  L     Y+FR+ AVN  G G+ SK +  V+   
Sbjct: 75  ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 115

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score =  108 bits (273), Expect = 2e-28
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 4/114 (3%)

Query: 296 GTDKGTAKVTVLDIPSPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET 354
           G+   +A + V  +P  PE P    S + + + NL W  P  DG + ++ Y++E  +   
Sbjct: 4   GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNA 62

Query: 355 GRWVPMGDVSGTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
              V +  V    T      L+    Y FR+ AVN +G+         ++  + 
Sbjct: 63  PWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPES 116

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 16/53 (30%), Positives = 21/53 (39%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 121
           E N P     A  +       V  L+    Y+FR+ AVN  G G+ S  T   
Sbjct: 59  ENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 111

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 556 VPGKPSKPEAT--DVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
           +P  P  P AT   V++  I + W +P  +G S +  Y +E  E  +   + +     + 
Sbjct: 17  LPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKA 75

Query: 614 KT 615
            +
Sbjct: 76  TS 77

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 55.8 bits (135), Expect = 8e-10
 Identities = 13/47 (27%), Positives = 18/47 (38%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 207
               A  +       V  L+    Y+FR+ AVN  G G+ S  T   
Sbjct: 65  TVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 111

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score =  113 bits (284), Expect = 5e-30
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 1/107 (0%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 458
                      PD P  P + +  K+ + L+W  P  D GS I  +++E     G  E  
Sbjct: 7   GAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFC 65

Query: 459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
                +     +  L      +FR+ A N  G    S+     T   
Sbjct: 66  QCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 99.0 bits (247), Expect = 5e-25
 Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 3/112 (2%)

Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMET 354
           G+       T+   P  P  P + +N TK+S  L+W+AP  D G+ I ++V+E       
Sbjct: 4   GSSGAEIFTTLSCEPDIPNPP-RIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGN 61

Query: 355 GRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
           G +      S    +   L       FR+ A N  G S         T+   
Sbjct: 62  GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCS 113

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
            P  P+ P   +  K+ + ++W+ P S+ GS I+ + +E  E   G            K 
Sbjct: 17  EPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDE-GKGNGEFCQCYMGSQKQ 74

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 11/47 (23%), Positives = 17/47 (36%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 121
            E C    G   + K+  L      +FR+ A N  G    S+    +
Sbjct: 62  GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYY 108

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 50.1 bits (120), Expect = 8e-08
 Identities = 11/47 (23%), Positives = 17/47 (36%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH 207
            E C    G   + K+  L      +FR+ A N  G    S+    +
Sbjct: 62  GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYY 108

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score =  111 bits (279), Expect = 3e-29
 Identities = 35/110 (31%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WE 456
           S     D    P  P +P VTD  K+ V L W P    G  P S YIIE   +     W+
Sbjct: 5   SSGKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQ 63

Query: 457 KACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
                      T V  L+    Y F V A+N  G  +PS  S PV  +  
Sbjct: 64  TVANHVKTTLYT-VRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 99.0 bits (247), Expect = 5e-25
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM-ETGRWVP 359
                + D+P PP  P + +++TK+S  L W+ P   G      Y++E      +  W  
Sbjct: 7   GKNYDLSDLPGPPSKP-QVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQT 64

Query: 360 MGD-VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
           + + V  T      L     Y F V+A+N  G S P     P+  +D 
Sbjct: 65  VANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
           +PG PSKP+ TDV K+ + + WQ P + G      Y +E   ++     +   + ++T  
Sbjct: 15  LPGPPSKPQVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTL 73

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 13/56 (23%), Positives = 18/56 (32%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
             +       T    V  L     Y F V A+N  G  +PS  + P   +    S 
Sbjct: 61  SWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSS 116

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 12/50 (24%), Positives = 17/50 (34%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
             +       T    V  L     Y F V A+N  G  +PS  + P   +
Sbjct: 61  SWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score =  115 bits (289), Expect = 9e-29
 Identities = 48/316 (15%), Positives = 83/316 (26%), Gaps = 75/316 (23%)

Query: 312 PPEGP-----LKPSNITKS-SCNLEWRA-PRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
           P + P     + PS+     +  L W+  P  +    IL Y V     ++       + +
Sbjct: 4   PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ----NYT 59

Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
              T+    +    Y   +   N +G+S      + +T      +   P          +
Sbjct: 60  VNATKLTVNLTNDRYLATLTVRNLVGKSDA----AVLTIPACDFQATHPVMDLKAFPKDN 115

Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWEKACIVPANITATSVPDLKEGEEYE 480
            + +EWT P++     + +YI+E            +               +L E + Y 
Sbjct: 116 MLWVEWTTPRE----SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYL 171

Query: 481 FRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDL 540
             V  V   GPG P                 I  Y  Q                      
Sbjct: 172 ITVTPVYADGPGSPE---------------SIKAYLKQA--------------------- 195

Query: 541 NEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQ-PISNGGSAIKGYEVERRERT 599
                           P K        V K+   ++W Q P+      I+ Y +  R   
Sbjct: 196 ---------------PPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII 240

Query: 600 SGRWIKITPDPIRTKT 615
                          T
Sbjct: 241 GNETAVNVDSSHTEYT 256

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score =  114 bits (287), Expect = 2e-28
 Identities = 44/210 (20%), Positives = 63/210 (30%), Gaps = 12/210 (5%)

Query: 297 TDKGTAKVTVLDIPSPPEGPLKP-----SNITKSSCNLEWRAPRDDGGTDILHY-VVEKM 350
              G +   VL IP+       P     +    +   +EW  PR+     IL + V+   
Sbjct: 82  NLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDK 141

Query: 351 DMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
                 W              NL E   Y   V  V   G   P      I A      P
Sbjct: 142 APCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP----ESIKAYLKQAPP 197

Query: 411 DRPGQPTVTDWGKDHVDLEWTP-PKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
            +         GK+   LEW   P       I  Y I  +   G  E A  V ++ T  +
Sbjct: 198 SKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIG-NETAVNVDSSHTEYT 256

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           +  L     Y  R+ A    G  +  + + 
Sbjct: 257 LSSLTSDTLYMVRMAAYTDEGGKDGPEFTF 286

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 32/219 (14%), Positives = 55/219 (25%), Gaps = 24/219 (10%)

Query: 185 YEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP 244
           Y   +   N  G  + +  T P                  D+K     N    + V    
Sbjct: 74  YLATLTVRNLVGKSDAAVLTIPACDFQATHPV-------MDLKAFPKDN---MLWVEWTT 123

Query: 245 IPTK------EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 298
                     EW            ++  +          +       + T+    + G  
Sbjct: 124 PRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGP- 182

Query: 299 KGTAKV----TVLDIPSPPEGPLKPSNITKSSCNLEWRA-PRDDGGTDILHYVVEKMDME 353
            G+ +          PS     ++   + K+   LEW   P D     I +Y +    + 
Sbjct: 183 -GSPESIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII 240

Query: 354 TGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES 392
                   D S T     +L     Y  R+ A    G  
Sbjct: 241 GNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGK 279

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 22/135 (16%), Positives = 34/135 (25%), Gaps = 32/135 (23%)

Query: 92  DLIEGNQYEFRVLAVNKGGPGEPSDPT----------APHIARAKKGK-----------C 130
           +L E   Y   V  V   GPG P               P +   K GK            
Sbjct: 163 NLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPV 222

Query: 131 YHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 190
               G +   +I+ +                E     +    +  +  L     Y  R+ 
Sbjct: 223 DVQNGFIRNYTIFYRTIIG-----------NETAVNVDSSHTEYTLSSLTSDTLYMVRMA 271

Query: 191 AVNKGGPGEPSDPTA 205
           A    G  +  + T 
Sbjct: 272 AYTDEGGKDGPEFTF 286

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 22/122 (18%), Positives = 29/122 (23%), Gaps = 20/122 (16%)

Query: 99  YEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSI-------------YEQ 145
           Y   +   N  G  + +  T P            L      + +             Y  
Sbjct: 74  YLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYIL 133

Query: 146 LKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVL--DLIEGNQYEFRVLAVNKGGPGEPSDP 203
                +      C       Q E  T     L  +L E   Y   V  V   GPG P   
Sbjct: 134 EWC--VLSDKAPCITDW---QQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI 188

Query: 204 TA 205
            A
Sbjct: 189 KA 190

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score =  108 bits (273), Expect = 1e-28
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 467
             P  P    VT+     V L W         P++ Y I+ +          +     T 
Sbjct: 6   SGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATTR 62

Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            S+  L    EY FRV+AVN  G G PS+A    T + 
Sbjct: 63  YSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQ 100

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 5/103 (4%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMGDV 363
           +    P PP      +  T +S  L W +        + +Y ++     T G +  +  V
Sbjct: 3   SGSSGPKPPIDL-VVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGV 58

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
           + T      L    +Y FRV AVN IG   P       T +  
Sbjct: 59  ATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQS 101

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 7/58 (12%), Positives = 15/58 (25%), Gaps = 3/58 (5%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
            P  P     T+     + + W          +  Y ++ R   +    +       T
Sbjct: 7   GPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVDGVATT 61

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 90  VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
           +  L   ++Y FRVLAVN  G G PS+    
Sbjct: 65  IGGLSPFSEYAFRVLAVNSIGRGPPSEAVRA 95

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
           +  L   ++Y FRVLAVN  G G PS+    
Sbjct: 65  IGGLSPFSEYAFRVLAVNSIGRGPPSEAVRA 95

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score =  108 bits (272), Expect = 2e-28
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 209 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND 268
             +    P I      D KVRAG + E    V G    T  W+     I   +  K+ N 
Sbjct: 1   GSSGSSGPQI-IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENS 59

Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
           +  +KL +  +++   G YTL V+N  G+ +    +TV+D P PP G 
Sbjct: 60  ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 107

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score =  109 bits (274), Expect = 1e-27
 Identities = 36/208 (17%), Positives = 61/208 (29%), Gaps = 19/208 (9%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAP---RDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
           D+P  P   ++ S ++  +  + W      +    TD  +Y V              + +
Sbjct: 2   DLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYK-NAN 60

Query: 365 GTYTRAE--NLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTVT 419
            T        L     Y F V           S+        T +     P +       
Sbjct: 61  ATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGT---TFELVPTSPPKDVTVVSK 117

Query: 420 DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI---VPANITATSVPDLKEG 476
           +     + + W PP +  G  I+ YII             +   V  N     + +L   
Sbjct: 118 EGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLD 176

Query: 477 EEYEFRVIAVNKGGPGEPSKASAPVTCK 504
             Y F++ A N  G G     S  V  +
Sbjct: 177 TPYYFKIQARNSKGMGPM---SEAVQFR 201

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 30/205 (14%), Positives = 45/205 (21%), Gaps = 57/205 (27%)

Query: 413 PGQPTVTDWGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P     +    D + + W      K    +    Y +  K       K     A   +  
Sbjct: 8   PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 67

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFI 529
           V  LK    YEF V+          S                         T +      
Sbjct: 68  VTGLKPNTLYEFSVMVTKGRRSSTWSM---TAHGT----------------TFEL----- 103

Query: 530 TLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKP---EATDVDKDHIKIKWQQPISNGGS 586
                                     VP  P K     + +     I + WQ P    G 
Sbjct: 104 --------------------------VPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGK 137

Query: 587 AIKGYEVERRERTSGRWIKITPDPI 611
            I GY +      +        +P+
Sbjct: 138 -ITGYIIYYSTDVNAEIHDWVIEPV 161

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 25/157 (15%), Positives = 39/157 (24%), Gaps = 30/157 (19%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT-----------A 119
           N P   K       T    V  L     YEF V+          S               
Sbjct: 49  NIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSP 108

Query: 120 PHIARAKKGKC------------YHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQT 167
           P        +                 G +    IY     +     + + P+       
Sbjct: 109 PKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV------- 161

Query: 168 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
            G+    ++ +L     Y F++ A N  G G  S+  
Sbjct: 162 VGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAV 198

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score =  105 bits (263), Expect = 3e-27
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 3/109 (2%)

Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIV 461
           A+     P  P              L  T    DGG+PI +YI++ + K          V
Sbjct: 2   AEASMREPSPP-SIHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLEKKV 59

Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
             N     +  L+    YE ++ A N+ G  EP+     +  KP  +  
Sbjct: 60  QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKD 108

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 86.8 bits (215), Expect = 1e-20
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
             +  PSPP   +     +  S  L      DDGG  IL Y+V+    +         V 
Sbjct: 4   ASMREPSPPS--IHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQ 60

Query: 365 GTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 407
           G       E+L     Y  ++ A N++G S P V +  +  K   
Sbjct: 61  GNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNI 105

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 53.7 bits (129), Expect = 5e-09
 Identities = 11/64 (17%), Positives = 22/64 (34%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG 128
             +        + +G+     +  L     YE ++ A N+ G  EP+        +    
Sbjct: 47  SKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNII 106

Query: 129 KCYH 132
           K +H
Sbjct: 107 KDHH 110

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 9/57 (15%), Positives = 20/57 (35%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY 217
                + +G+     +  L     YE ++ A N+ G  EP+        +   +  +
Sbjct: 53  QWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDH 109

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 3/62 (4%)

Query: 556 VPGKPSKP--EATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
              +PS P            K+   +   +GG+ I  Y V+ R +               
Sbjct: 5   SMREPSPPSIHGQPSSGKSFKLSITKQ-DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNK 63

Query: 614 KT 615
             
Sbjct: 64  DH 65

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score =  103 bits (258), Expect = 1e-26
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 406 PFGRPDRPGQPTVTDW-GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPAN 464
             G P     P +        + L W PP  DGGSPIS Y +E  P      +  +   +
Sbjct: 5   SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPR-EVYQGS 63

Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
               +V  L  G+ Y FR+ A NK G G  S+     T   
Sbjct: 64  EVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPG 104

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score =  100 bits (251), Expect = 1e-25
 Identities = 26/97 (26%), Positives = 35/97 (36%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           P P   P            L W  P  DGG+ I  Y VE   +E      +   S     
Sbjct: 9   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT 68

Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
             +L+ G  Y+FR++A NK+G           TA   
Sbjct: 69  VSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGS 105

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 556 VPGKPSKPEATDVDKDH-IKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITP 608
            PG    P      K   I+++W  P+ +GGS I  Y VE          ++  
Sbjct: 8   PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ 61

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 64  VLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 123
            +++         +    +G   +  V  L+ G  Y FR+ A NK G G  S+      A
Sbjct: 45  SVEMSPIEKDEPREV--YQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 209
             +    +G   +  V  L+ G  Y FR+ A NK G G  S+      A
Sbjct: 56  PREV--YQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 102

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score =  101 bits (253), Expect = 7e-26
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 16/112 (14%)

Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK--------------YG 453
           G    P  P VT    + V L W  P+ + G PI  + ++ +                YG
Sbjct: 1   GSTYPPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYG 59

Query: 454 PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
             +    +  + TA+ V DLK    Y FR++AV      + S  SA    +P
Sbjct: 60  KPKWNSELGKSFTAS-VTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 110

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 68.8 bits (168), Expect = 2e-14
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 20/110 (18%)

Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGD----- 362
              PP  P   + ++  S  L W  PR+  G  I+ + V+ +M  +   W    D     
Sbjct: 2   STYPPTPP-NVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYG 59

Query: 363 --------VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
                            +L   H Y FR+ AV    ++      S  +AK
Sbjct: 60  KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE----SNTSAK 105

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRER-TSGRWIKIT 607
               P+ P  T +  + + ++W  P  N G  I  ++V+ R       W    
Sbjct: 2   STYPPTPPNVTRLSDESVMLRWMVP-RNDGLPIVIFKVQYRMVGKRKNWQTTN 53

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 50.3 bits (120), Expect = 7e-08
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 156 HLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
           ++     K     G +    V DL   + Y FR+LAV      + S+ +A 
Sbjct: 55  NIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAK 105

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 50.3 bits (120), Expect = 7e-08
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 73  PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
               K     G +    V DL   + Y FR+LAV      + S+ +A 
Sbjct: 58  YGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAK 105

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score =  100 bits (251), Expect = 2e-25
 Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 3/118 (2%)

Query: 195 GGPGEPSDPTAPHIARAKKVSPYINRDQL--SDIKVRAGSNFEFDINVIGEPIPTKEWLC 252
           G  G       P   R     P I   +        + G      +   G+P P   W  
Sbjct: 1   GSSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK 60

Query: 253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
               +    R  +   D  T   V  + R DSG Y L+V+     D  T ++ V++  
Sbjct: 61  GGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 98.9 bits (247), Expect = 4e-25
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 467
             PD+   P VT        + W  P    G+ +++Y +E     G  +          +
Sbjct: 6   SGPDQCKPPQVTCRSATCAQVNWEVPL-SNGTDVTEYRLEWGGVEGSMQI--CYCGPGLS 62

Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
             +  L     Y  RV A++  G G  S+  A VT
Sbjct: 63  YEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT 97

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 76.2 bits (188), Expect = 4e-17
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 310 PSPPEGPLKP--SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 367
            S P+    P  +  + +   + W  P    GTD+  Y +E   +E G         G  
Sbjct: 5   SSGPDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGGVE-GSMQICYCGPGLS 62

Query: 368 TRAENLIEGHDYNFRVKAVNKIGESLP 394
              + L     Y  RV+A++ +G    
Sbjct: 63  YEIKGLSPATTYYCRVQALSVVGAGPF 89

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
            P +   P+ T       ++ W+ P  + G+ +  Y +E      G        P  +
Sbjct: 7   GPDQCKPPQVTCRSATCAQVNWEVP-LSNGTDVTEYRLEWGG-VEGSMQICYCGPGLS 62

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 90  VLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
           +  L     Y  RV A++  G G  S+  A
Sbjct: 65  IKGLSPATTYYCRVQALSVVGAGPFSEVVA 94

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
           +  L     Y  RV A++  G G  S+  A
Sbjct: 65  IKGLSPATTYYCRVQALSVVGAGPFSEVVA 94

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 96.7 bits (241), Expect = 2e-24
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKA---CIVPANI 465
           P  P    V +       +++  P+  GG PI +Y  E +      W          +  
Sbjct: 7   PSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65

Query: 466 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
              ++  LK    Y  R+ A+N  G GE S AS   T
Sbjct: 66  GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 7/103 (6%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-- 362
           + +D PS P           S+  +++  P   GG  IL Y  E   +    W       
Sbjct: 2   SHMDTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDA 59

Query: 363 ---VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT 402
                        L     Y  R+ A+N  G           T
Sbjct: 60  KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 102

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPD 609
            P  PS  +  +      ++++ +P + GG  I  Y+ E R      W     D
Sbjct: 6   TPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 58

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 11/50 (22%), Positives = 17/50 (34%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
           E         A+         ++ L     Y  R+ A+N  G GE S  +
Sbjct: 49  EEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 165 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
           A+         ++ L     Y  R+ A+N  G GE S  +
Sbjct: 59  AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 98

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 97.1 bits (242), Expect = 3e-24
 Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEK 457
               ++   G PD P +   +  G   + + W  P+ +   P+  Y +E +    G   +
Sbjct: 7   GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCER--PLQGYSVEYQLLNGGELHR 64

Query: 458 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
             I     T+  V DL     Y FRV A ++ G G        +T + +   P
Sbjct: 65  LNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRER--EGVITIESQVSGP 115

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 88.6 bits (220), Expect = 2e-21
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 7/109 (6%)

Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM--G 361
                +P  P   L  S +  +S  + W+ PR +    +  Y VE   +  G    +   
Sbjct: 12  RLTAGVPDTP-TRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQLLNGGELHRLNIP 68

Query: 362 DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
           + + T    E+L+  H Y FRV+A ++ G       +  IT +     P
Sbjct: 69  NPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRER--EGVITIESQVSGP 115

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
           VP  P++   + +    +++ WQ+P       ++GY VE +    G   ++       
Sbjct: 17  VPDTPTRLVFSALGPTSLRVSWQEPRCERP--LQGYSVEYQLLNGGELHRLNIPNPAQ 72

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 16/44 (36%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
             +            V DL+  + Y FRV A ++ G G   +  
Sbjct: 62  LHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV 105

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 16/44 (36%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
             +            V DL+  + Y FRV A ++ G G   +  
Sbjct: 62  LHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGV 105

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score =  102 bits (255), Expect = 3e-24
 Identities = 42/304 (13%), Positives = 85/304 (27%), Gaps = 18/304 (5%)

Query: 224 SDIKVRAGSNFEF-----DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD 278
           S   V  G                +P P   W           + ++ +  + + + +  
Sbjct: 8   SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPH 67

Query: 279 SKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDG 338
                + +       +        ++     P+ P       N+T SS   +W    +  
Sbjct: 68  LNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETH 127

Query: 339 --GTDILHYVVEKMDMETG-----RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIG- 390
              +  L     + + +T        VP    S      ++L+   +    V+A N +G 
Sbjct: 128 LPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGT 187

Query: 391 -ESLPL-VCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK 448
             S  L +    +   +P         P         + L W P +        +  +  
Sbjct: 188 SMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQ-KCELRH 246

Query: 449 KPKYGP--WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
           KP+ G   W     +P       +  L     Y  ++  +    PG  S  S  +  +  
Sbjct: 247 KPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTT 306

Query: 507 FVAP 510
             A 
Sbjct: 307 ERAA 310

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 42/317 (13%), Positives = 78/317 (24%), Gaps = 65/317 (20%)

Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYV-VEKMDMETGRWVPMGDVSGTY 367
             S P   L    IT +SC ++      D    IL  +  E       + +  G      
Sbjct: 6   SVSAPIVHLG-DPIT-ASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESII 63

Query: 368 TRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT-VTDWGKDHV 426
           T           +  +      G SL ++ Q  + A  P   P  P   + + +     +
Sbjct: 64  TLPHLNHTQAFLSCSLNW----GNSLQILDQVELRAGYP---PAIPHNLSCLMNLTTSSL 116

Query: 427 DLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT-------SVPDLKEGEEY 479
             +W P   +   P S  +   K +     +   +   +              L   +  
Sbjct: 117 ICQWEPGP-ETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNM 175

Query: 480 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLD 539
              V A N  G     +         +   P++                           
Sbjct: 176 GIWVQAENALGTSMSPQLCLDPMDVVKLEPPML--------------------------- 208

Query: 540 LNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVE-RRER 598
                                  PEA       +++ W+          K  E+  + +R
Sbjct: 209 -----------------RTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQK-CELRHKPQR 250

Query: 599 TSGRWIKITPDPIRTKT 615
               W  + P P+    
Sbjct: 251 GEASWALVGPLPLEALQ 267

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 96.0 bits (239), Expect = 7e-24
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 406 PFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANI 465
               P  P    V +       +++  P+  GG PI +Y  E +        +    A  
Sbjct: 4   GSSGPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKE 62

Query: 466 TATS----VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
            +      +  LK    Y  R+ A+N  G GE S AS   T
Sbjct: 63  ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 103

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 83.3 bits (206), Expect = 2e-19
 Identities = 23/119 (19%), Positives = 33/119 (27%), Gaps = 12/119 (10%)

Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-- 357
           G++  +    PS P           S+  +++  P   GG  IL Y  E   +    W  
Sbjct: 1   GSSGSSG---PSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS 55

Query: 358 ---VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRP 413
                             L     Y  R+ A+N  G           T   P   P  P
Sbjct: 56  KWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT--QPVREPSAP 112

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 56.3 bits (136), Expect = 7e-10
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
            P  PS  +  +      ++++ +P + GG  I  Y+ E R      W     D      
Sbjct: 7   GPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 65

Query: 616 S 616
            
Sbjct: 66  E 66

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 3/55 (5%)

Query: 69  EGNHPIWEKCAQTEGDTPKG---KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
                +W        +        ++ L     Y  R+ A+N  G GE S  +  
Sbjct: 47  AVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEF 101

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
           ++ L     Y  R+ A+N  G GE S  +  
Sbjct: 71  IVGLKPETTYAVRLAALNGKGLGEISAASEF 101

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 95.9 bits (239), Expect = 8e-24
 Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 4/122 (3%)

Query: 390 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 449
           G S      +P T       P  P     +      + L W  P  D       Y +   
Sbjct: 1   GSSGSSGEHAPATTGPL---PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYT 57

Query: 450 PKYGPWEKAC-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFV 508
            +    E+            ++ +L     Y FRV+A NK G GE S      T      
Sbjct: 58  KEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGP 117

Query: 509 AP 510
           + 
Sbjct: 118 SS 119

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 87.9 bits (218), Expect = 5e-21
 Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG 355
           G+    A  T   +PS P   +  S ++     L WR P  D   D L Y V        
Sbjct: 4   GSSGEHAPATTGPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIA 62

Query: 356 RWVPM--GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
           R                +NL+    Y FRV A NK G    
Sbjct: 63  RERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGES 103

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 12/58 (20%), Positives = 18/58 (31%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
           +P  P    A+ V    IK+ W+ P S+       Y V   +    R           
Sbjct: 17  LPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGE 74

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
                 +     +  + +L+    Y FRV+A NK G GE S P 
Sbjct: 64  ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPL 107

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
                 +     +  + +L+    Y FRV+A NK G GE S P 
Sbjct: 64  ERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPL 107

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 99.9 bits (248), Expect = 3e-23
 Identities = 53/296 (17%), Positives = 90/296 (30%), Gaps = 22/296 (7%)

Query: 224 SDIKVRAGSNFEF-------DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKV 276
               V+  SNF          ++          W  N  TI  K+++ I+N   S+    
Sbjct: 12  ESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTI-PKEQYTIINRTASSVTFT 70

Query: 277 FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRD 336
             +         +        +     +     P  P+  L            EW   R+
Sbjct: 71  DIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRE 129

Query: 337 DGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLV 396
                      E    +        D   + T   + +   +    V+A N +G+     
Sbjct: 130 THLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKV---- 185

Query: 397 CQSPITAKDPFGR--PDRPGQPTVT--DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY 452
             S     DP  +  P+ P   +V   +     + L WT P       + +Y I+ + K 
Sbjct: 186 -TSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL-KYNIQYRTKD 243

Query: 453 GP-WEKACIVPANITATS--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
              W +        T +S  V DLK   EY FR+  + + G G  S  S   +   
Sbjct: 244 ASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT 299

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 35/301 (11%), Positives = 80/301 (26%), Gaps = 64/301 (21%)

Query: 320 SNITKSSCNLEWRAPRDDGGT-DILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHD 378
           SN T + C L+ +         + + +      +   ++  +   + + T  +       
Sbjct: 20  SNFT-AVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ 78

Query: 379 YNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGG 438
               +    ++ ++   V    I +  P   P++P   +        +  EW   ++   
Sbjct: 79  LTCNILTFGQLEQN---VYGITIISGLP---PEKPKNLSCIVNEGKKMRCEWDGGRETHL 132

Query: 439 SPISQYIIEKKPKYGPW-EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA 497
              + + ++ +     + +         + T           E  V A N  G       
Sbjct: 133 E--TNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSD-- 188

Query: 498 SAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVP 557
                       PV                                    VK       P
Sbjct: 189 -------HINFDPV----------------------------------YKVK-------P 200

Query: 558 GKPSKPEATDVD--KDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
             P      + +     +K+ W  P       +K Y ++ R + +  W +I P+   +  
Sbjct: 201 NPPHNLSVINSEELSSILKLTWTNPSIKSVIILK-YNIQYRTKDASTWSQIPPEDTASTR 259

Query: 616 S 616
           S
Sbjct: 260 S 260

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 25/162 (15%), Positives = 36/162 (22%), Gaps = 29/162 (17%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD----------PTAP 120
            H   +  A+ +  T        +     E  V A N  G                P  P
Sbjct: 144 THKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPP 203

Query: 121 HIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLC----------PIWE--KCAQTE 168
           H                L   +        +     L             W       T 
Sbjct: 204 HNLSVINS-------EELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTA 256

Query: 169 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
                  V DL    +Y FR+  + + G G  SD +      
Sbjct: 257 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 298

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 92.4 bits (230), Expect = 6e-23
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 273
           + P I       IK++AG     +++ IG P PT  W   D          +     +T 
Sbjct: 1   LKPKI-LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59

Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
           +    +KR DSG Y L VKN  G D+   +V V
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 1  APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPL 43
           P I       IK+ AG T   + + IG P P   W  G +  
Sbjct: 2  KPKI-LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGA 43

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 99.2 bits (246), Expect = 6e-23
 Identities = 40/292 (13%), Positives = 72/292 (24%), Gaps = 16/292 (5%)

Query: 228 VRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGI 286
              G +       V  E   T  W+       S             +L +   +  DSG 
Sbjct: 18  SLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM---GRRLLLRSVQLHDSGN 74

Query: 287 YTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD--ILH 344
           Y+       G   GT  + V   P  P+          S+   EW        T   +L 
Sbjct: 75  YSC---YRAGRPAGTVHLLVDVPPEEPQL-SCFRKSPLSNVVCEWGPRSTPSLTTKAVLL 130

Query: 345 YVVEKMDMETGRWVP----MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSP 400
               +         P          +   A    +   Y   +   + +G          
Sbjct: 131 VRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQ 190

Query: 401 ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYGPWEKAC 459
                    P      T        + + W  P   +      ++ +  + +        
Sbjct: 191 GCGILQPDPPANI-TVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTW 249

Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPV 511
           +V        + D   G  +  ++ A  + G GE S+ S      P   +  
Sbjct: 250 MVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRS 301

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 91.0 bits (226), Expect = 3e-22
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 359
           G++  +   +P+ P   L+      +S  L W+ P          Y++E  D   G++  
Sbjct: 1   GSS-GSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTV-PADGYILELDDGNGGQFRE 58

Query: 360 MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
           +     T    + L     YN RVKA NK G S  
Sbjct: 59  VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPY 93

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 89.1 bits (221), Expect = 2e-21
 Identities = 24/106 (22%), Positives = 33/106 (31%), Gaps = 5/106 (4%)

Query: 402 TAKDPFGRPDRP-GQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP-KYGPWEKAC 459
           ++      P  P  Q        +   L W  P      P   YI+E      G + +  
Sbjct: 2   SSGSSGPVPATPILQLEECCTHNNSATLSWKQPP-LSTVPADGYILELDDGNGGQFREVY 60

Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
           +     T  +V  L     Y  RV A NK G    SK     T + 
Sbjct: 61  VGKE--TMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 64  VLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 123
           +L+L +GN   + +     G      V  L   + Y  RV A NK G    S       +
Sbjct: 45  ILELDDGNGGQFREV--YVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTS 102

Query: 124 RA 125
             
Sbjct: 103 EG 104

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 47.1 bits (112), Expect = 8e-07
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 556 VPGKPS-KPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
           VP  P  + E      +   + W+QP         GY +E  +   G++ ++    
Sbjct: 9   VPATPILQLEECCTHNNSATLSWKQP-PLSTVPADGYILELDDGNGGQFREVYVGK 63

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 11/42 (26%), Positives = 13/42 (30%)

Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
            V  L   + Y  RV A NK G    S       +     S 
Sbjct: 68  TVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGPSS 109

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 90.5 bits (225), Expect = 7e-22
 Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 5/123 (4%)

Query: 385 AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQY 444
           +  +IG+  P     PI  +     P  P      +     V L W PP    G  I  Y
Sbjct: 5   SSGRIGDGSPS--HPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAY 61

Query: 445 IIE--KKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
            I               ++  +    +   LK    Y FR+ A  + G GE ++A    T
Sbjct: 62  QITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTT 121

Query: 503 CKP 505
            K 
Sbjct: 122 EKR 124

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVSG- 365
           D+P PP G +    +  +S  L W+ P    G  IL Y +  +++  T     +  ++  
Sbjct: 26  DVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLAPS 83

Query: 366 -TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
                A  L     Y FR+ A  + G           T K  
Sbjct: 84  ARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRS 125

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVE-RRERTSGRWIKITPDP 610
           VPG P      +V    +++ WQ P +  G  I  Y++  R   T+     +    
Sbjct: 27  VPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLA 81

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 8/50 (16%), Positives = 14/50 (28%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
                             +     L   + Y FR+ A  + G GE ++  
Sbjct: 68  NTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 8/44 (18%), Positives = 14/44 (31%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
                       +     L   + Y FR+ A  + G GE ++  
Sbjct: 74  TATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 89.6 bits (222), Expect = 9e-22
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 2/94 (2%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC-IVPANITAT 468
              P +  V       V L W PP+      +  Y++E +     WE     V    T  
Sbjct: 7   GLSPPRGLVAVRTPRGVLLHWDPPE-LVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETEL 65

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
            VP L +   YEFR++A       +PS  +   T
Sbjct: 66  LVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVST 99

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 68.8 bits (168), Expect = 2e-14
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 310 PSPPEGPLKP--SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGT 366
            S    P +   +  T     L W  P       +  YV+E     +  W  +   V+GT
Sbjct: 4   GSSGLSPPRGLVAVRTPRGVLLHWDPPELVPKR-LDGYVLEG-RQGSQGWEVLDPAVAGT 61

Query: 367 YTR--AENLIEGHDYNFRVKAVNKIGESLP 394
            T      LI+   Y FR+ A      S P
Sbjct: 62  ETELLVPGLIKDVLYEFRLVAFAGSFVSDP 91

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 75  WEKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
           WE       G   +  V  LI+   YEFR++A       +PS+  
Sbjct: 51  WEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 161 WEKCAQ-TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
           WE       G   +  V  LI+   YEFR++A       +PS+  
Sbjct: 51  WEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTA 95

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
              P +          + + W  P       + GY +E R+  S  W  + P    T+T 
Sbjct: 7   GLSPPRGLVAVRTPRGVLLHWDPP-ELVPKRLDGYVLEGRQG-SQGWEVLDPAVAGTETE 64

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 90.2 bits (224), Expect = 9e-22
 Identities = 26/105 (24%), Positives = 36/105 (34%), Gaps = 2/105 (1%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 458
                      P  P            V L W PP +  G  I  + +    +    E+A
Sbjct: 7   GKPAIPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDNRERA 65

Query: 459 C-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
                      +V +LK    Y FRV+A N+ GPGE S+     T
Sbjct: 66  LNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVAT 110

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 79.4 bits (196), Expect = 4e-18
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 4/101 (3%)

Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG 355
           G+    A  +   +PS P   + P  ++     L WR P +  G +I  + V        
Sbjct: 4   GSSGKPAIPSSSVLPSAPRD-VVPVLVSSRFVRLSWRPPAEAKG-NIQTFTVFFSREGDN 61

Query: 356 RWVPM--GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
           R   +             NL     Y FRV A N+ G    
Sbjct: 62  RERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGES 102

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 1/60 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
           +P  P       V    +++ W+ P    G+ I+ + V        R   +      +  
Sbjct: 17  LPSAPRDVVPVLVSSRFVRLSWRPPAEAKGN-IQTFTVFFSREGDNRERALNTTQPGSLQ 75

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
                 T+  + +  V +L     Y FRV+A N+ GPGE S P 
Sbjct: 63  ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPI 106

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
                 T+  + +  V +L     Y FRV+A N+ GPGE S P 
Sbjct: 63  ERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPI 106

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 89.0 bits (221), Expect = 1e-21
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 413 PGQPT--VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSV 470
           PG+PT  ++    +   L+W PPK+  G  +  Y ++                +    +V
Sbjct: 8   PGRPTMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFTV 66

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
             L +G  Y FR+ A N+ G GE  +         
Sbjct: 67  TGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDL 101

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 84.4 bits (209), Expect = 6e-20
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 11/114 (9%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDV 363
           +    P  P   +  S    ++  L+W  P++  G ++L Y ++    +  R   +    
Sbjct: 3   SGSSGPGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGK 59

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 417
              +     L +G  Y FR+ A N+ G             + P    D  G  +
Sbjct: 60  DDQHFTVTGLHKGTTYIFRLAAKNRAGLGEE----FEKEIRTPE---DLSGPSS 106

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
            PG+P+    +    +   ++W  P    G  + GY ++       R   I       
Sbjct: 7   GPGRPTM-MISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQ 62

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
             +          + D     V  L +G  Y FR+ A N+ G GE  +   
Sbjct: 46  RADEARPNTIDFGKDDQ-HFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 95

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
            V  L +G  Y FR+ A N+ G GE  +   
Sbjct: 65  TVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 95

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 96.8 bits (240), Expect = 2e-21
 Identities = 71/475 (14%), Positives = 114/475 (24%), Gaps = 78/475 (16%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD----------PTAPHIAR 124
              C Q E  + K  +  L  G  YE  + +++  G                P  P I  
Sbjct: 36  SRSCYQLEKTSIK--IPALSHG-DYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEI-- 90

Query: 125 AKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWE---------------------K 163
                   L       ++Y +    G         IWE                      
Sbjct: 91  ------LQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLN 144

Query: 164 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG----GPGEPSDPTAPHIARAKKVSPYIN 219
              T         + L E   +   +          G  E SD +         +     
Sbjct: 145 GKDTLHHWSWASDMPL-ECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISW--IPDSQT 201

Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 279
           +    D  +  GS+  F      + +               +   I  D ++  +K+ + 
Sbjct: 202 KVFPQDKVILVGSDITFCCVSQEKVLSALIG--------HTNCPLIHLDGENVAIKIRNI 253

Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDG- 338
               S      V  +   +     +     P  P+  L             W   R    
Sbjct: 254 SV--SASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQ-LNCETHDLKEIICSWNPGRVTAL 310

Query: 339 -GTDILHYVVEKMDMETGRWV---PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
            G     Y + +        +               + L     YNF + A N +G S  
Sbjct: 311 VGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRS-- 368

Query: 395 LVCQSPITAK-DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG 453
              QS I         P  P    V D     V L W  P            IE K    
Sbjct: 369 ---QSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINF-LCEIEIKKSNS 424

Query: 454 PWEKACI----VPANITATSVPDLKEGEEYEFRVIAV--NKGGPGEPSKASAPVT 502
             E+  +    V  +    ++  L     Y FR+           + S     +T
Sbjct: 425 VQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHLT 479

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 60.2 bits (145), Expect = 1e-09
 Identities = 65/474 (13%), Positives = 124/474 (26%), Gaps = 103/474 (21%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYI-- 218
              C Q E  + K  +  L  G  YE  + +++  G                  +P I  
Sbjct: 36  SRSCYQLEKTSIK--IPALSHG-DYEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQ 92

Query: 219 --NRDQLSDIKVR---------AGSNFEFDINVIGEPIPTKEWLCND-ITIISKDRFKIV 266
                  S + ++           SN  ++I V+ +       L     T+  KD     
Sbjct: 93  LSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHW 152

Query: 267 NDDKSTKLKV---FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKP---- 319
           +      L+    F   R        +    W       +++ +        P       
Sbjct: 153 SWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILV 212

Query: 320 -SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHD 378
            S+IT   C  +           +L  ++   +          D      +  N+     
Sbjct: 213 GSDIT-FCCVSQ---------EKVLSALIGHTNCPLIHL----DGENVAIKIRNISVSAS 258

Query: 379 YNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDG- 437
               V    +       +  + I A  P   PD P Q          +   W P +    
Sbjct: 259 SGTNVVFTTEDN-----IFGTVIFAGYP---PDTPQQLNCETHDLKEIICSWNPGRVTAL 310

Query: 438 -GSPISQYIIEKKP--KYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEP 494
            G   + Y + +    KY   ++A              L   E Y F + A N  G  + 
Sbjct: 311 VGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQS 370

Query: 495 SKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYID 554
           +                                         ++++ E +          
Sbjct: 371 T----------------------------------------ILVNITEKVY--------- 381

Query: 555 NVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITP 608
             P  P+  +  D++   +K+ W  P  N        E+E ++  S +  +   
Sbjct: 382 --PHTPTSFKVKDINSTAVKLSWHLP-GNFAKINFLCEIEIKKSNSVQEQRNVT 432

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 46/353 (13%), Positives = 83/353 (23%), Gaps = 64/353 (18%)

Query: 317 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEG 376
           LK            W+AP   G        +E+      R      +  T  +   L  G
Sbjct: 2   LKCVTNNLQVWQCSWKAPSGTGRGTDYEVCIEQ------RSRSCYQLEKTSIKIPALSHG 55

Query: 377 HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT-DWGKDHVDLEWTPPKK 435
            DY   + +++  G S     +  +  ++    PD P    ++ D+    + L+W     
Sbjct: 56  -DYEITINSLHDFGSSTS---KFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGS 111

Query: 436 DGGSPIS-QYIIEKKPK----------YGPWEKACIVPANITATSVPDLKEGEEYEFRVI 484
                 +  + I+   K          +           + +  S   L E   +   + 
Sbjct: 112 VFPHRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPL-ECAIHFVEIR 170

Query: 485 AVNKG----GPGEPSKASAPVTCKPRFVAP--------------------VIDQYALQDM 520
                    G  E S  S          +                     V  +  L  +
Sbjct: 171 CYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSAL 230

Query: 521 TAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDN---------------VPGKPSKPEA 565
                 P I L  +N  + +     S    + +                  P  P +   
Sbjct: 231 IGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNC 290

Query: 566 TDVDKDHIKIKWQQPISNG--GSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
              D   I   W         G     Y +          +K    P      
Sbjct: 291 ETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQ 343

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 96.1 bits (239), Expect = 5e-21
 Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 1/116 (0%)

Query: 302 AKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG 361
           A V  +  P PP  P    NI   +  L W+ P  DGG+ + +Y +EK +   G W P  
Sbjct: 2   AMVADVPEPEPPRFP-IIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCA 60

Query: 362 DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT 417
               TYT  E L  G  Y FR+ A NK G+S P    +P+       +  R     
Sbjct: 61  KSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVD 116

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 90.3 bits (224), Expect = 4e-19
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 467
             P+ P  P + +   + V L W PP  DGGS ++ Y IEK+   G    +    +  T 
Sbjct: 8   PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGS-WSPCAKSRYTY 66

Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
           T++  L+ G++YEFR+IA NK G  +P + +APV    
Sbjct: 67  TTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPG 104

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 66.8 bits (163), Expect = 1e-11
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 2/121 (1%)

Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
                +  +    +          R++    +I +      +V  G +  F   VI    
Sbjct: 454 RISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVK--PYGTEVGEGQSANFYCRVIASSP 511

Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305
           P   W  +D  +    ++    +     L +   K  D G YT+  KNS+GT +    + 
Sbjct: 512 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571

Query: 306 V 306
           V
Sbjct: 572 V 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 553 IDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKIT 607
               P  P  P   ++  + + + W+ P  +GGS +  Y +E+RE   G W    
Sbjct: 6   DVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCA 60

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W+  A   G       ++  E     W  CA++        +  L  G QYEFR++A NK
Sbjct: 30  WKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS--RYTYTTIEGLRAGKQYEFRIIAENK 87

Query: 109 GGPGEPSDPTAPHIARAKKGK 129
            G  +P +PTAP +    + K
Sbjct: 88  HGQSKPCEPTAPVLIPGDERK 108

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 213
           W  CA++        +  L  G QYEFR++A NK G  +P +PTAP +    +
Sbjct: 56  WSPCAKS--RYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDE 106

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 86.9 bits (215), Expect = 1e-20
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE-----KKPKYGPWEKACIVPAN 464
             +P  P V       ++L W   +K+      +  +      + PK   +    I    
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGV--IYTGY 73

Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            T   V  L+    Y+FR+   +  G  E S   +  T + 
Sbjct: 74  ATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRE 114

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 80.8 bits (199), Expect = 1e-18
 Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 8/118 (6%)

Query: 293 NSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI----LHYVVE 348
           +S  +     KV  L  P PP        +T  S  L W   + +         L + +E
Sbjct: 2   SSGSSGMEPHKVVPLSKPHPPVV----GKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIE 57

Query: 349 KMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
           + D +   +  +     T    E L     Y FR+K  +  GE       S  T ++ 
Sbjct: 58  EEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 4/58 (6%)

Query: 555 NVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKG----YEVERRERTSGRWIKITP 608
               KP  P    V    I++ W           +     + +E  +     +  I  
Sbjct: 14  VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT 71

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 6/74 (8%)

Query: 49  WEKCAQTEGDTPKGKVLDLI----EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL 104
           W+   + +   P+ + L       +     +       G   +  V  L     Y+FR+ 
Sbjct: 36  WDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY--TGYATRHVVEGLEPRTLYKFRLK 93

Query: 105 AVNKGGPGEPSDPT 118
             +  G  E S   
Sbjct: 94  VTSPSGEYEYSPVV 107

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
           V  L     Y+FR+   +  G  E S   
Sbjct: 79  VEGLEPRTLYKFRLKVTSPSGEYEYSPVV 107

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 90.0 bits (222), Expect = 2e-20
 Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 17/247 (6%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN-KGGPGEPSDPTAPHIARAKKVSPYIN 219
            ++ A+  G      + ++  G   E  V             D T  +   A +    I+
Sbjct: 6   LKEAAEVTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAIS 65

Query: 220 RDQ--LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF 277
            D   ++  K+  G       ++ GEP+P KE L       +K   +     + + L V 
Sbjct: 66  DDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVL-------AKVVLRAEAKTEGSNLSVT 118

Query: 278 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDD 337
           +S  GD       +  +  T       +   + +P     K S I K +  + W  P   
Sbjct: 119 NSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVR-DFKASEINKKNVTVTWTEPETT 177

Query: 338 GGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVC 397
            G  +  Y++ K     G+ V       T    + L     YNF++ A    GE      
Sbjct: 178 EG--LEGYILYK----DGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKES 231

Query: 398 QSPITAK 404
            +  TA+
Sbjct: 232 LTLRTAR 238

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens} Length = 238

 Score = 71.9 bits (175), Expect = 3e-14
 Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 18/201 (8%)

Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 368
           +            I+     +  +   +DG   +L        +          ++    
Sbjct: 51  LNYDENAFEYVEAISDDGVFVNAKKI-EDGKVRVLVS-----SLTGEPLPAKEVLAKVVL 104

Query: 369 RAENLIEGHDYNFRVKAVNK-----IGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK 423
           RAE   EG + +    +V          +      + I    P    +       ++  K
Sbjct: 105 RAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINK 164

Query: 424 DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRV 483
            +V + WT P+   G  +  YI+ K       +K   +  + T+ +   L     Y F++
Sbjct: 165 KNVTVTWTEPETTEG--LEGYILYKD-----GKKVAEIGKDETSYTFKKLNRHTIYNFKI 217

Query: 484 IAVNKGGPGEPSKASAPVTCK 504
            A    G     ++    T +
Sbjct: 218 AAKYSNGEVSSKESLTLRTAR 238

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 90.4 bits (223), Expect = 5e-19
 Identities = 46/360 (12%), Positives = 89/360 (24%), Gaps = 38/360 (10%)

Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS--DPTAPHIARAKKVSPYINRDQL 223
               + P   +  L    QY   V  +        +    +     +    +P       
Sbjct: 543 PKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNP----SVP 598

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
            D    + S+ +  I +  +P P+     N         ++   +D       +  K   
Sbjct: 599 LDPISVSNSSSQ--IILKWKP-PSDP---NGNITHYLVFWERQAEDSELFELDYCLKGLK 652

Query: 284 SGIYTLAV------KNSWG-TDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRD 336
               T +             ++   +       P           + +SS    +     
Sbjct: 653 LPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQI--LKELEESSFRKTFEDYLH 710

Query: 337 D-------GGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKI 389
           +                V               V+        L     Y   ++A N+ 
Sbjct: 711 NVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQD 770

Query: 390 GESLPLVCQSPITAKDPFGRP--DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE 447
                    + ++A+        D  G  T   +  + V L W  PK+  G  I  Y + 
Sbjct: 771 TPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVS 829

Query: 448 KKPKYGPWEKACI---VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
            +         C      A      +  L  G  Y  R+ A +  G G  ++   P    
Sbjct: 830 YRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTE---PTYFY 885

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 75.0 bits (183), Expect = 3e-14
 Identities = 37/316 (11%), Positives = 72/316 (22%), Gaps = 60/316 (18%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
           T    PS P       + + S   L+W+ P D  G +I HY+V          +   D  
Sbjct: 590 TDATNPSVPLD-PISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFELD-- 645

Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPT-----VT 419
             Y      +    ++   ++ +    +      S            +  +         
Sbjct: 646 --YCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRK 703

Query: 420 DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEY 479
            +     ++ + P        +               +      N  +  +  L+    Y
Sbjct: 704 TFEDYLHNVVFVPRPSRKRRSLGDV---GNAGNNEEHRPFEKVVNKESLVISGLRHFTGY 760

Query: 480 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLD 539
              + A N+  P E    +A V+               + M                   
Sbjct: 761 RIELQACNQDTPEERCSVAAYVSA--------------RTMPEA---------------- 790

Query: 540 LNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERT 599
                                        + + + + WQ+P    G  I  YEV  R   
Sbjct: 791 ---------------KADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYG 834

Query: 600 SGRWIKITPDPIRTKT 615
                           
Sbjct: 835 DEELHLCDTRKHFALE 850

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 75.0 bits (183), Expect = 3e-14
 Identities = 23/241 (9%), Positives = 50/241 (20%), Gaps = 33/241 (13%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG-------------- 355
                        +     L W         D+L +++   +                  
Sbjct: 468 CENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSN 527

Query: 356 -----------RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQ--SPIT 402
                      R       +        L     Y   VK +    +           I 
Sbjct: 528 SWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIY 587

Query: 403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVP 462
            +     P  P  P         + L+W PP    G  I+ Y++  + +    E      
Sbjct: 588 VQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELFE--- 643

Query: 463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTA 522
             +             +     + +     +     +   C             L++ + 
Sbjct: 644 --LDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSF 701

Query: 523 Q 523
           +
Sbjct: 702 R 702

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 60.7 bits (146), Expect = 1e-09
 Identities = 29/266 (10%), Positives = 53/266 (19%), Gaps = 74/266 (27%)

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK 423
            G      N         +++ V+           +  T  D     +   + +      
Sbjct: 423 QGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSF 482

Query: 424 DHVDLEWTPPKKDGGSPISQYIIEKKPKYG------------------------PWEKAC 459
           D + L W P        +  +++  K                            P     
Sbjct: 483 DKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSND 542

Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA--SAPVTCKPRFVAPVIDQYAL 517
               N     +  LK   +Y   V  +        +    S  +  +             
Sbjct: 543 PKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQ------------- 589

Query: 518 QDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKW 577
              T                                   P  P  P +       I +KW
Sbjct: 590 ---TDAT-------------------------------NPSVPLDPISVSNSSSQIILKW 615

Query: 578 QQPISNGGSAIKGYEVERRERTSGRW 603
           + P    G+ I  Y V    +     
Sbjct: 616 KPPSDPNGN-ITHYLVFWERQAEDSE 640

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 54.9 bits (131), Expect = 6e-08
 Identities = 46/367 (12%), Positives = 97/367 (26%), Gaps = 87/367 (23%)

Query: 80  QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG-----PGEPSD----------PTAPHIAR 124
               + P   +  L    QY   V  +          G  SD          P+ P    
Sbjct: 543 PKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPI 602

Query: 125 AKKGKCYHLV----------GTLLKDSI-YEQLKRSGLFDQFHLCPIWEKCAQTEGDTPK 173
           +       ++          G +    + +E+        +   C    K          
Sbjct: 603 SVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSR------ 656

Query: 174 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN 233
                      +     + +     +     +     +   +      +L +   R    
Sbjct: 657 ----------TWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFR--KT 704

Query: 234 FE-FDINVIGEPIPTKE-------WLCND-------ITIISKDRFKIVNDDKSTKLKVFD 278
           FE +  NV+  P P+++           +         +++K+   I      T      
Sbjct: 705 FEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTG----- 759

Query: 279 SKRGDSGIYTLAVK--NSWGTDKG-------TAKVTVLDIPSPPEGPLKPSNITKSSCNL 329
                   Y + ++  N    ++        +A+           GP+       +  +L
Sbjct: 760 --------YRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHL 811

Query: 330 EWRAPRDDGGTDILHYVV---EKMDMETGRWVPMGDVS-GTYTRAENLIEGHDYNFRVKA 385
            W+ P++  G  I+ Y V      D E          +     R   L  G+ Y+ R++A
Sbjct: 812 MWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRA 869

Query: 386 VNKIGES 392
            +  G  
Sbjct: 870 TSLAGNG 876

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E Length = 897

 Score = 44.5 bits (104), Expect = 9e-05
 Identities = 30/139 (21%), Positives = 44/139 (31%), Gaps = 31/139 (22%)

Query: 90  VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK--------GKCYHLVGTLLKDS 141
           +  L     Y   + A N+  P E     A   AR           G   H +     + 
Sbjct: 751 ISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFE--NNV 808

Query: 142 I----------------YEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQY 185
           +                YE   R    ++ HLC   +  A   G   +G    L  GN Y
Sbjct: 809 VHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRG----LSPGN-Y 863

Query: 186 EFRVLAVNKGGPGEPSDPT 204
             R+ A +  G G  ++PT
Sbjct: 864 SVRIRATSLAGNGSWTEPT 882

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 81.5 bits (201), Expect = 1e-18
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 18/115 (15%)

Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM-------- 352
              +  L  P+PP    +    +  +  + W +        I  Y ++            
Sbjct: 7   GEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFIS 63

Query: 353 ---ETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
                  W+ + ++   +     L  G  Y F VKA+N+ G         P   K
Sbjct: 64  LYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNS----EPTRLK 114

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 80.7 bits (199), Expect = 2e-18
 Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 14/123 (11%)

Query: 399 SPITAKDPFGRPDRP-GQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK 457
           S     D    P+ P  +  +     D + + W          IS Y ++     G    
Sbjct: 5   SSGEGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANF 61

Query: 458 AC--------IVPANITATS--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 507
                     ++  NI      V  L+ G  Y F V A+N+ G             +P  
Sbjct: 62  ISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFK 121

Query: 508 VAP 510
             P
Sbjct: 122 SGP 124

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
           V  L  G +Y F V A+N+ G            ++  K  P
Sbjct: 84  VHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKSGP 124

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 90  VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 127
           V  L  G +Y F V A+N+ G            ++  K
Sbjct: 84  VHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFK 121

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 546 SMVKLSYIDNVPGKPS-KPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
           S   L Y+   P  PS + E      D I + W         +I  YE++    T    
Sbjct: 6   SGEGLDYLT-APNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQAN 60

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 81.2 bits (201), Expect = 1e-18
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 6/113 (5%)

Query: 390 GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK 449
           G S        +  +     P               + + W  P    G  I  Y +   
Sbjct: 1   GSSGSS---GRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYM 56

Query: 450 PKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
            K    E+   V  +  + ++  LK+  EY FRV+A NK GPG  +   A  T
Sbjct: 57  EKGTDKEQD--VDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 107

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 73.5 bits (181), Expect = 5e-16
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
             + +P P    L+    + +S  + W  P    G +I +Y +  M+  T +   + DVS
Sbjct: 13  PEVQLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDV-DVS 69

Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
                   L +  +Y+FRV A NK G  + 
Sbjct: 70  SHSYTINGLKKYTEYSFRVVAYNKHGPGVS 99

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPD 609
           +PG      A       I + W+ P+S  G  I+ Y++   E+ + +   +   
Sbjct: 17  LPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDVDVS 69

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 80  QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
             +  +    +  L +  +Y FRV+A NK GPG  +   
Sbjct: 65  DVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 103

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
             +  +    +  L +  +Y FRV+A NK GPG  +   
Sbjct: 65  DVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 103

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 84.1 bits (207), Expect = 1e-18
 Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 13/208 (6%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDG--GTDILHYVVEKMDMETGRW-----VPMGD 362
           P+ P       ++T +S   +W    +     + IL     + D +         V    
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64

Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIG--ESLPLVCQSPITAK-DPFGRPDRPGQPTVT 419
            +      +NL+        V+A N +G  ES  L        K +P         P V 
Sbjct: 65  QNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVV 124

Query: 420 DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGE 477
                 + L W P K        +  +  +P+        +     +     +  L +  
Sbjct: 125 SHQPGCLWLSWKPWKPSEYMEQ-ECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAP 183

Query: 478 EYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            Y  ++  +    PG  S  S  +  +P
Sbjct: 184 VYTLQMRCIRSSLPGFWSPWSPGLQLRP 211

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS 469
           D P    VT+     + + WTPP     + I+ Y I   P  GP   K   VP + T+ +
Sbjct: 3   DAPTDLQVTNVTDTSITVSWTPP----SATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF 507
           +  L  G EY   V A+       P   +   T     
Sbjct: 59  ITGLTPGVEYVVSVYALKDNQESPPLVGTQ-TTGGHHH 95

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
             P   L+ +N+T +S  + W  P       I  Y +               V  + T  
Sbjct: 3   DAPTD-LQVTNVTDTSITVSWTPPSAT----ITGYRITYTPSNGPGEPKELTVPPSSTSV 57

Query: 371 --ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 407
               L  G +Y   V A+    ES PLV  +  T     
Sbjct: 58  TITGLTPGVEYVVSVYALKDNQESPPLV-GTQTTGGHHH 95

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 8/45 (17%), Positives = 12/45 (26%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
             K       +    +  L  G +Y   V A+       P   T 
Sbjct: 44  EPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQ 88

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 8/45 (17%), Positives = 12/45 (26%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
             K       +    +  L  G +Y   V A+       P   T 
Sbjct: 44  EPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQESPPLVGTQ 88

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 79.0 bits (195), Expect = 5e-18
 Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 5/112 (4%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 458
            P    D    PD+P    V     + + + WTPP       +  YII         E  
Sbjct: 7   GPENDLDESQVPDQPSSLHVRP-QTNCIIMSWTPPLNPNI-VVRGYIIGYGVGSPYAETV 64

Query: 459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
             V +     S+  L+    Y   + A N  G G P       T +     P
Sbjct: 65  -RVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL--YESATTRSITSGP 113

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 19/107 (17%), Positives = 30/107 (28%), Gaps = 5/107 (4%)

Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
           +    +P  P           +   + W  P +     +  Y++              D 
Sbjct: 12  LDESQVPDQPSSLH--VRPQTNCIIMSWTPPLNPNIV-VRGYIIGYGVGSPYAETVRVDS 68

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
              Y   E L     Y   +KA N  GE +PL      T +     P
Sbjct: 69  KQRYYSIERLESSSHYVISLKAFNNAGEGVPLY--ESATTRSITSGP 113

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 80.8 bits (199), Expect = 1e-17
 Identities = 44/209 (21%), Positives = 71/209 (33%), Gaps = 17/209 (8%)

Query: 312 PPEGPLKPSNITKSSCNL--EWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT--- 366
           PPE P   S I      +  EW   R+       ++ ++     T ++        T   
Sbjct: 7   PPEKPKNLSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEW-ATHKFADCKAKRDTPTS 63

Query: 367 YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT--DWGKD 424
            T   + +   +    V+A N +G+            K     P+ P   +V   +    
Sbjct: 64  CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVK---PNPPHNLSVINSEELSS 120

Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS--VPDLKEGEEYEF 481
            + L WT P       I +Y I+ + K    W +        T +S  V DLK   EY F
Sbjct: 121 ILKLTWTNPS-IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVF 179

Query: 482 RVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
           R+  + + G G  S  S   +       P
Sbjct: 180 RIRCMKEDGKGYWSDWSEEASGITYEDRP 208

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 26/218 (11%), Positives = 55/218 (25%), Gaps = 55/218 (25%)

Query: 400 PITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC 459
           P ++  P   P++P   +        +  EW   + +     + + ++ +     +    
Sbjct: 1   PGSSGLP---PEKPKNLSCIVNEGKKMRCEWDGGR-ETHLETN-FTLKSEWATHKFADCK 55

Query: 460 IVPANITATSVP-DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQ 518
                 T+ +V          E  V A N  G       +     K +   P        
Sbjct: 56  AKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN------ 109

Query: 519 DMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQ 578
                                                          ++     +K+ W 
Sbjct: 110 ------------------------------------------LSVINSEELSSILKLTWT 127

Query: 579 QPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKTS 616
            P S     I  Y ++ R + +  W +I P+   +  S
Sbjct: 128 NP-SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRS 164

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 78.0 bits (192), Expect = 1e-17
 Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 14/127 (11%)

Query: 377 HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKD 436
           H ++          +                   D P +  V       + + W  P   
Sbjct: 3   HHHHHHSSDYKDDDDKGE-------NLYFQGSVSDVPTKLEVVAATPTSLLISWDAP--- 52

Query: 437 GGSPISQYIIEKKPKYGPWEKACI-VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
               +  Y I      G        VP + +  ++  LK G +Y   V AV         
Sbjct: 53  -AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAG 111

Query: 496 KASAPVT 502
             S P++
Sbjct: 112 --SKPIS 116

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 62.6 bits (152), Expect = 3e-12
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 9/110 (8%)

Query: 287 YTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYV 346
           ++   K+    DKG        +   P   L+    T +S  + W AP       + +Y 
Sbjct: 8   HSSDYKDD--DDKGENLYFQGSVSDVPTK-LEVVAATPTSLLISWDAPAVT----VRYYR 60

Query: 347 VEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLP 394
           +   +      V    V G+ + A    L  G DY   V AV  +   L 
Sbjct: 61  ITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLA 110

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 79.9 bits (196), Expect = 3e-17
 Identities = 41/213 (19%), Positives = 61/213 (28%), Gaps = 21/213 (9%)

Query: 309 IPSPPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
           +P    G  KP+NIT  S N    L+W  P    G  +  Y V+       +W+   +  
Sbjct: 2   VPCVSGGLPKPANITFLSINMKNVLQWTPPEGLQGVKV-TYTVQYFIYGQKKWLNKSECR 60

Query: 365 GTYTR-----AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVT 419
                     AE     H Y  RV+A+     S            +    P  P     T
Sbjct: 61  NINRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGP--PEVALTT 118

Query: 420 DWGKDHVDLE--WTPPKKDGGSPISQYIIEKKPKY------GPWEKACIVPANITATSVP 471
           D     V L       +     P+S   I    KY          +            + 
Sbjct: 119 DEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLT 178

Query: 472 DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
            L+    Y   V +   G P   ++ S     +
Sbjct: 179 WLEPNTLYCVHVESFVPGPPR-RAQPSEKQCAR 210

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 15/91 (16%), Positives = 26/91 (28%), Gaps = 5/91 (5%)

Query: 424 DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT----SVPDLKEGEEY 479
               L+WTPP+         Y ++                NI  T    S        +Y
Sbjct: 22  MKNVLQWTPPE-GLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQY 80

Query: 480 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
             RV A+      + +++          + P
Sbjct: 81  YARVRAIWGTKCSKWAESGRFYPFLETQIGP 111

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 79.4 bits (195), Expect = 4e-17
 Identities = 34/214 (15%), Positives = 53/214 (24%), Gaps = 28/214 (13%)

Query: 310 PSPPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSG 365
                  LKP  +   S N    L+W+  R   G +   Y V+       +W    D  G
Sbjct: 2   TQSTHESLKPQRVQFQSRNFHNILQWQPGRALTG-NSSVYFVQYKIYGQRQWKNKEDCWG 60

Query: 366 TYTR-----AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTD 420
           T        +E       Y  RV+A +    S   +        +    P  P       
Sbjct: 61  TQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDP--PVMNITQV 118

Query: 421 WGKDHVDLEW--TPPKKDGGSPIS-------QYIIEKKPKYGPWEKACIVPANITATSVP 471
            G   V L     P +      +S        Y +         ++  +      A  + 
Sbjct: 119 NGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINN-SLEKEQKVYEGAHRAVEIE 177

Query: 472 DLKEGEEYEFRVIAVNK--GGPGEPSKASAPVTC 503
            L     Y               + S       C
Sbjct: 178 ALTPHSSYCVVAEIYQPMLDRRSQRS----EERC 207

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens} Length = 211

 Score = 44.4 bits (104), Expect = 4e-05
 Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 5/91 (5%)

Query: 424 DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT----SVPDLKEGEEY 479
            H  L+W P +       S Y ++ K       K               +       E Y
Sbjct: 21  FHNILQWQPGR-ALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPY 79

Query: 480 EFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
             RV A + G   E S            + P
Sbjct: 80  YGRVRAASAGSYSEWSMTPRFTPWWETKIDP 110

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 82.4 bits (202), Expect = 7e-17
 Identities = 50/360 (13%), Positives = 99/360 (27%), Gaps = 25/360 (6%)

Query: 162 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD 221
             C            L L    + + R+ A  +         +     +A+   P ++ +
Sbjct: 55  SGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLE 114

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
                 V   S    D  +      +  +  + +   +    +   ++  ++ K++    
Sbjct: 115 AEDKAIVIHISPGTKDSVMWALDGLSFTY--SLVIWKNSSGVEERIENIYSRHKIYKLSP 172

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCN----LEWRAPRDD 337
             +    +          G          +       P NI  S  N    L+W     +
Sbjct: 173 ETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYAN 232

Query: 338 GG---TDILHYVVEKMDMETGRWVPMGDVSGTYTR----AENLIEGHDYNFRVKAVNKIG 390
                  +  ++         +W  + D     T      +N+ +   Y  RV+A +   
Sbjct: 233 MTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNN 292

Query: 391 ESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQ-----YI 445
            S         T          P    +     D   +    PK+ G +P+ Q     Y 
Sbjct: 293 TSFWSEEIKFDTEIQA---FLLPPVFNIRS-LSDSFHIYIGAPKQSGNTPVIQDYPLIYE 348

Query: 446 IEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIA-VNKGGPGEPSKASAPVTCK 504
           I         E+   +    T  +VP+LK    Y  +  A        + S  S  V  K
Sbjct: 349 IIFWENTSNAER--KIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEK 406

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 63.9 bits (154), Expect = 6e-11
 Identities = 28/213 (13%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGT-----DILHYVVEKMDMETGRWVPMGDV 363
              PPE  L+  +    +  +       D            Y +      +G    + ++
Sbjct: 105 QIGPPEVHLEAED---KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENI 161

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK 423
              +     L     Y  +VKA       + +                 P    V+   +
Sbjct: 162 YSRHK-IYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQ 220

Query: 424 DHVDLEWTPPKKDGGSPI---SQYIIEKKPKYGPWEKACIVPANITATSV---PDLKEGE 477
           ++V L+W     +    +     ++      +    K      N+  T      ++ +  
Sbjct: 221 NYV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKG 279

Query: 478 EYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
            Y  RV A +       S+     T    F+ P
Sbjct: 280 IYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLP 312

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 62.7 bits (151), Expect = 1e-10
 Identities = 21/199 (10%), Positives = 43/199 (21%), Gaps = 21/199 (10%)

Query: 318 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT-----YT 368
            P  +     +    L W    +  G   + +  +        W+ +             
Sbjct: 10  SPQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQNITSTKCNF 67

Query: 369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD-HVD 427
            +  L    +   R++A  +   S      S    +     P     P V    +D  + 
Sbjct: 68  SSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGP-----PEVHLEAEDKAIV 121

Query: 428 LEWTPPKKDGGSP-ISQYIIEKKPKYGPWEKACIVPANITATSV--PDLKEGEEYEFRVI 484
           +  +P  KD     +                          +      L     Y  +V 
Sbjct: 122 IHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVK 181

Query: 485 AVNKGGPGEPSKASAPVTC 503
           A           +      
Sbjct: 182 AALLTSWKIGVYSPVHCIK 200

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A* Length = 414

 Score = 45.0 bits (105), Expect = 6e-05
 Identities = 50/362 (13%), Positives = 99/362 (27%), Gaps = 38/362 (10%)

Query: 76  EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG----------PGEPSDPTAPHIARA 125
             C            L L    + + R+ A  +            P   +    P +   
Sbjct: 55  SGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLE 114

Query: 126 KKGKCYHLVGT-LLKDSIYEQLKRSGLFDQFHLCPI-WEKCAQTEGDTPKGKVLDLIEGN 183
            + K   +  +   KDS+   L          +         + E    + K+  L    
Sbjct: 115 AEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPET 174

Query: 184 QYEFRVLAVNKGGPGE-PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG 242
            Y  +V A            P        +   P     ++S         +++    + 
Sbjct: 175 TYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMT 234

Query: 243 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG--DSGIYTLAVKNSWG---- 296
             +                ++K + D ++ K       +     GIY L V+ S G    
Sbjct: 235 FQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTS 294

Query: 297 --TDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI-----LHYVVEK 349
             +++      +     PP   ++       S ++   AP+  G T +     L Y +  
Sbjct: 295 FWSEEIKFDTEIQAFLLPPVFNIRS---LSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIF 351

Query: 350 MDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKA------VNKIGESLPLVCQSPITA 403
            +  +     + +     T   NL     Y  + +A      +NK       VC+   T 
Sbjct: 352 WENTSNAERKIIEKKTDVT-VPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEK--TK 408

Query: 404 KD 405
             
Sbjct: 409 PG 410

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITATS 469
             P    VT+       + W PP      PI   ++    K  P ++  + + ++IT+ +
Sbjct: 3   QPPFNIKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTSSITSLT 58

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
           + +L+    YE R++A N      P   +
Sbjct: 59  LTNLEPNTTYEIRIVARNGQQYSPPVSTT 87

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 67.0 bits (164), Expect = 6e-14
 Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 11/104 (10%)

Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSG 365
           +L    PP   +K +NIT ++  + W+ P       I   +V              D++ 
Sbjct: 1   MLQ---PPFN-IKVTNITLTTAVVTWQPPI----LPIEGILVTFGRKNDPSDETTVDLTS 52

Query: 366 TYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 407
           + T     NL     Y  R+ A N    S P+   +  T     
Sbjct: 53  SITSLTLTNLEPNTTYEIRIVARNGQQYSPPVS-TTFTTGSLEH 95

>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor complex, immune system; 2.52A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R Length = 214

 Score = 77.5 bits (190), Expect = 2e-16
 Identities = 30/211 (14%), Positives = 54/211 (25%), Gaps = 24/211 (11%)

Query: 318 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT-----YT 368
            P ++   +      L W        +    Y V  +      W  +   S T       
Sbjct: 7   SPPSVWFEAEFFHHILHWTPIPQQSES--TCYEVALLRYGIESWNSISQCSQTLSYDLTA 64

Query: 369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDL 428
              +L   + Y  RV+AV+    S   V  +  +  +                G     +
Sbjct: 65  VTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTV--GSVNLEIHNGFILGKI 122

Query: 429 EWTPPKKDGGSP--------ISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYE 480
           +   PK                +Y I  +   G +             S+    E  E+ 
Sbjct: 123 QLPRPKMAPAQDTYESIFSHFREYEIAIRKVPGQFTFT-HKKVKHEQFSLLTSGEVGEFC 181

Query: 481 FRVIAV--NKGGPGEPSKASAPVTCKPRFVA 509
            +V     ++   G  SK       +  F  
Sbjct: 182 VQVKPSVASRSNKGMWSKEECISLTRQYFTV 212

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 8/127 (6%)

Query: 387 NKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQ 443
           +       +  L  ++  +  D    P+ P    V       + + WTPP+      +  
Sbjct: 2   SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRP-LVTSIVVSWTPPENQNI-VVRG 59

Query: 444 YIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503
           Y I       P  +   V       ++ +L     Y   + A N  G G P         
Sbjct: 60  YAIGYGIG-SPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPL--YESAVT 116

Query: 504 KPRFVAP 510
           +P    P
Sbjct: 117 RPHTSGP 123

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 305 TVLDIPSPPEGPLKPSNI----TKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM 360
           T          P  PS++      +S  + W  P +     +  Y +             
Sbjct: 17  TFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNI-VVRGYAIGYGIGSPHAQTIK 75

Query: 361 GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
            D    Y   ENL     Y   +KA N +GE +PL        +     P
Sbjct: 76  VDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLY--ESAVTRPHTSGP 123

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 73.6 bits (181), Expect = 4e-16
 Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 4/90 (4%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
              P     +D   D   + W         P+    +      G        P N T+  
Sbjct: 8   LAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGNATSAM 63

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           +  L     Y  RV  +  GG         
Sbjct: 64  LGPLSSSTTYTVRVTCLYPGGGSSTLTGRV 93

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 61.3 bits (149), Expect = 8e-12
 Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
              P   L  S+++  +  + W          +    V  +  E G      +  G  T 
Sbjct: 7   GLAPPRHLGFSDVSHDAARVFWEGAPRP----VRLVRVTYVSSE-GGHSGQTEAPGNATS 61

Query: 370 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
           A    L     Y  RV  +   G S  L  +   T K P
Sbjct: 62  AMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRV-TTKKAP 99

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 72.7 bits (179), Expect = 7e-16
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P               + + W PP    G P+  Y +         E+   +  +  +  
Sbjct: 8   PGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQN--IEVDGLSYK 64

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           +  LK+  EY  R +A N+ GPG  +     VT
Sbjct: 65  LEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVT 97

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 70.7 bits (174), Expect = 4e-15
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 367
             P P E  L+  + + +S  + W  P    G  +  Y +   ++ TG+   + +V G  
Sbjct: 6   SGPGPVEN-LQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNI-EVDGLS 62

Query: 368 TRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 406
            + E L +  +Y+ R  A N+ G    +  +      T  D 
Sbjct: 63  YKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVV---TLSDS 101

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPD 609
            PG     +A       I I W+ P    G  ++GY +   E ++G+   I  D
Sbjct: 7   GPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIEVD 59

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 80  QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
             E D    K+  L +  +Y  R LA N+ GPG  +D  
Sbjct: 55  NIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDI 93

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 166 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
             E D    K+  L +  +Y  R LA N+ GPG  +D  
Sbjct: 55  NIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDI 93

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 75.7 bits (186), Expect = 9e-16
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 190 LAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 249
           L+                 A A+K    +       + ++ G       NV G+P P   
Sbjct: 91  LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 150

Query: 250 WLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
           WL N+  +   D   +  +  ++    +      DSG Y L VKN +G++     V+V 
Sbjct: 151 WLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 11/82 (13%), Positives = 22/82 (26%)

Query: 242 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 301
                   W  N   I   DR K     +   L++ +    D G Y + + +     + T
Sbjct: 29  YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 88

Query: 302 AKVTVLDIPSPPEGPLKPSNIT 323
             ++            +     
Sbjct: 89  VDLSGQAYDEAYAEFQRLKQAA 110

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 72.4 bits (178), Expect = 9e-16
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
            ++  I   +   + V  G +  F  +  GEP+PT  WL     + +  R ++      +
Sbjct: 12  TLAARILT-KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
             ++   +  D G Y++ V+NS G  +    +T+
Sbjct: 71  TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 71.8 bits (176), Expect = 1e-15
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 406 PFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIVPAN 464
           P G        +VT+       + W          +S + +E +    G   +   +P+ 
Sbjct: 2   PLGSHLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDEPQYLDLPST 57

Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
            T+ ++PDL  G +Y   V  +++ G      +++  T
Sbjct: 58  ATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95

>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR {Homo sapiens} PDB: 2h45_A Length = 95

 Score = 68.7 bits (168), Expect = 1e-14
 Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 7/97 (7%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 367
                       + IT SS  + W +  D     +  + VE    E G      D+  T 
Sbjct: 4   GSHLVATS-ESVTEITASSFVVSWVSASDT----VSGFRVEYELSEEGDEPQYLDLPSTA 58

Query: 368 TRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT 402
           T     +L+ G  Y   V  +++ GE   ++  S  T
Sbjct: 59  TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 2/131 (1%)

Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
            +N                    V PY  +  + D++V  GS   FD  V G P P   W
Sbjct: 17  PINANKVENEDAFLEEVAEEKPHVKPYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMW 75

Query: 251 LCNDITIISKDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
             +D  +     F+I  D++    L + +    D   YT    NS G    TA++ V  +
Sbjct: 76  FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135

Query: 310 PSPPEGPLKPS 320
               EG  +  
Sbjct: 136 GKEGEGEGEGE 146

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITA 467
           R D P Q  V D       + W PP      P+  + +    K  P       +  +   
Sbjct: 2   RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTTIDLTEDENQ 57

Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
            S+ +LK   EYE  +I+        P+K + 
Sbjct: 58  YSIGNLKPDTEYEVSLISRRGDMSSNPAKETF 89

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 11/99 (11%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
              P   ++  ++T ++  + W  P       +  + +     +        D++    +
Sbjct: 3   LDAPSQ-IEVKDVTDTTALITWMPPSQP----VDGFELTYGIKDVPGDRTTIDLTEDENQ 57

Query: 370 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
               NL    +Y   + +      S P   ++  T    
Sbjct: 58  YSIGNLKPDTEYEVSLISRRGDMSSNP-AKETFTTGLAA 95

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITAT 468
              P +  V       + + W  P     S +  Y I      G    +   VP + +  
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAP--MSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTA 62

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
           ++  L  G +Y   V A  +   G      +P++   R
Sbjct: 63  TISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISINYR 99

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 62.1 bits (151), Expect = 4e-12
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 368
           + S P   L+    T +S  + W AP       + +Y +   +      V    V  + +
Sbjct: 4   VSSVPTK-LEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNSPVQEFTVPYSSS 60

Query: 369 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
            A    L  G DY   V A  +       +  SPI+  
Sbjct: 61  TATISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISIN 97

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
           V   P+K E        + I W  P+S+    +  Y +   E      ++    P
Sbjct: 4   VSSVPTKLEVVAATPTSLLISWDAPMSSSS--VYYYRITYGETGGNSPVQEFTVP 56

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 74.3 bits (182), Expect = 2e-15
 Identities = 34/194 (17%), Positives = 60/194 (30%), Gaps = 25/194 (12%)

Query: 318 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVE-----KMDMETGRWVPMGDVSGTYT 368
            P  ++  S N    L W      G    ++Y VE     +    +  W+P    S T  
Sbjct: 9   APQQLSVLSTNMKHLLMWSPVIAPGE--TVYYSVEYQGEYESLYTSHIWIPSSWCSLTEG 66

Query: 369 RA----ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
                 +++     YN RV+A      S   + + P   +        PG     D    
Sbjct: 67  PECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTR--PGMEITKDGFHL 124

Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI 484
            ++LE   P           +   + + G  E   +V +      +  ++ G  Y  +  
Sbjct: 125 VIELEDLGP------QFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQ 178

Query: 485 AVNK--GGPGEPSK 496
              K  G     S+
Sbjct: 179 TFVKAIGRYSAFSQ 192

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens} Length = 206

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 19/112 (16%), Positives = 29/112 (25%), Gaps = 7/112 (6%)

Query: 405 DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSP--ISQYIIEKKPKYGPWEKACIVP 462
           D       P Q +V      H+ L W+P    G +     +Y  E +  Y          
Sbjct: 2   DEVAILPAPQQLSVLSTNMKHL-LMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSW 60

Query: 463 -ANITATS---VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
            +           D+     Y  RV A         S    P   +   +  
Sbjct: 61  CSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTR 112

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 70.6 bits (173), Expect = 4e-15
 Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 4/94 (4%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITAT 468
              P +  V D     + + W          +  Y I      G    +   VP   +  
Sbjct: 8   SSVPTKLEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYSTA 66

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           ++  LK G +Y   V A +   PG     ++P++
Sbjct: 67  TISGLKPGVDYTITVYAYDTFFPGYEP--NSPIS 98

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
            S P   L+  + T +S  + W A       ++ +Y +   +      V    V G Y+ 
Sbjct: 8   SSVPTK-LEVVDATPTSLKISWDAYYSSWQ-NVKYYRITYGETGGDSPVQEFTVPGYYST 65

Query: 370 A--ENLIEGHDYNFRVKAVNKIGESLP 394
           A    L  G DY   V A +       
Sbjct: 66  ATISGLKPGVDYTITVYAYDTFFPGYE 92

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 70.2 bits (172), Expect = 4e-15
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS 469
             P    V++  +D + L WT P     +    ++I+ +            VP +  +  
Sbjct: 3   PAPKNLVVSEVTEDSLRLSWTAPD----AAFDSFMIQYQESEKVGEAINLTVPGSERSYD 58

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           +  LK G EY   +  V  G    P  A  
Sbjct: 59  LTGLKPGTEYTVSIYGVKGGHRSNPLSAEF 88

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 368
           +P+P    L  S +T+ S  L W AP          ++++  + E         V G+  
Sbjct: 2   LPAPKN--LVVSEVTEDSLRLSWTAPDAA----FDSFMIQYQESEKVGEAINLTVPGSER 55

Query: 369 RA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 407
                 L  G +Y   +  V     S PL  +   T     
Sbjct: 56  SYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAEF-TTGGHHH 95

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 70.0 bits (172), Expect = 4e-15
 Identities = 27/84 (32%), Positives = 42/84 (50%)

Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
           L D  V + S  +F +   GEP PT  W  +   I    ++K+  D     L++  +   
Sbjct: 13  LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTS 72

Query: 283 DSGIYTLAVKNSWGTDKGTAKVTV 306
           DSG+YT  VKNS G+   + K+T+
Sbjct: 73  DSGLYTCTVKNSAGSVSSSCKLTI 96

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 70.6 bits (173), Expect = 5e-15
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 5/91 (5%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITAT 468
              P    +     D + + WTPP       +  Y +   P  G   EK+  VP   +  
Sbjct: 8   RSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPGARSHV 63

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           ++PDL+   +Y   V A+   G  E   A+ 
Sbjct: 64  TLPDLQAATKYRVLVSAIYAAGRSEAVSATG 94

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
           +     SPP   L  ++ T  S  + W  P       +LHY +               V 
Sbjct: 3   SGSSGRSPPSN-LALASETPDSLQVSWTPPLGR----VLHYWLTYAPASGLGPEKSVSVP 57

Query: 365 GTYTRA--ENLIEGHDYNFRVKAVNKIGESLPL 395
           G  +     +L     Y   V A+   G S  +
Sbjct: 58  GARSHVTLPDLQAATKYRVLVSAIYAAGRSEAV 90

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 72.8 bits (179), Expect = 6e-15
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 210 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 269
           +A+   P   + +L  + VR GS     + V G P P  ++  +   I S   F+I  + 
Sbjct: 98  KAETAPPNFVQ-RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEG 156

Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
               L + ++   DSG Y++   NS G    TA++ V
Sbjct: 157 DLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 69.7 bits (171), Expect = 5e-14
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDS 279
            L  + V  GS   F+ ++ G P+P   W  +   I +      +I   D   KL +   
Sbjct: 11  PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAV 70

Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
            + +SG Y+L   N  G    TA++ V    +PP    +  ++T
Sbjct: 71  TKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT 114

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 72.8 bits (179), Expect = 6e-15
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 2/101 (1%)

Query: 209 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND 268
             AK   P      +  +    G      I   G+P P   W      I +   ++++  
Sbjct: 98  VPAKIHLPKTLE-GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT 156

Query: 269 -DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
              ++ +     +R D+G Y +  KN +G D+ T ++ V D
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 64.0 bits (156), Expect = 7e-12
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKI-VNDDKS 271
           ++P+    +L ++ VR  SN      V G P P  +W      II+   +++I       
Sbjct: 3   MAPHFKE-ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS--PPEGPLKPSNIT 323
            +L +      D+ +Y +   N  G+  GTA + V        P+       + 
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 69.6 bits (171), Expect = 8e-15
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
            L D  V  G + E    +     P   WL +   I    ++ +V +     L +  +  
Sbjct: 14  PLEDQWVAPGEDVELRCELSRAGTPVH-WLKDRKAIRKSQKYDVVCEGTMAMLVIRGASL 72

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
            D+G YT  V+      K TA + V +  S P 
Sbjct: 73  KDAGEYTCEVEA----SKSTASLHVEEKASGPS 101

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 76.2 bits (186), Expect = 8e-15
 Identities = 56/320 (17%), Positives = 92/320 (28%), Gaps = 36/320 (11%)

Query: 196 GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI 255
           G  E SD +        + +         D  V AGSN      +    + + +      
Sbjct: 185 GYKEWSDWSPLKNISWIRNTET--NVFPQDKVVLAGSNMTI-CCMSPTKVLSGQIGNTLR 241

Query: 256 TIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
            +I      +        L +  S+   + I  +   + +GT        V+    PP+ 
Sbjct: 242 PLIHLYGQTVA----IHILNIPVSENSGTNIIFITDDDVYGT--------VVFAGYPPDV 289

Query: 316 PLKPSNITKSSCNL--EWRAPRDDG--GTDILHYVVEKMDMETGRW--VPMGDVSGTYTR 369
           P K S  T     +   W   R  G  G     Y + +             G  + TY  
Sbjct: 290 PQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRL 349

Query: 370 AENLIEGHD-YNFRVKAVNKIG--ESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 426
              +  G + +NF +   N +G  +S  ++  +   A         P    V D     V
Sbjct: 350 GVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHD------PTSLKVKDINSTVV 403

Query: 427 DLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI----VPANITATSVPDLKEGEEYEFR 482
              W  P       +    IE        E           +    +V  L     Y FR
Sbjct: 404 TFSWYLPGNFTKINL-LCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFR 462

Query: 483 VIAVNKGGPGEPSKASAPVT 502
           V   +K    + S+ S    
Sbjct: 463 VRCSSKTF-WKWSRWSDEKR 481

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 70.8 bits (173), Expect = 8e-15
 Identities = 21/125 (16%), Positives = 37/125 (29%), Gaps = 13/125 (10%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD--------ILHYVVEKMDM-ETG 355
               + S    P   S+I   +  L W  P      +        +  Y V      + G
Sbjct: 13  AFEALLSNIVKP-VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDG 71

Query: 356 RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQ 415
           ++  +     T     +L    DY+ +V+A     +  P               PD P  
Sbjct: 72  KYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPS---EAEIFTTLSCEPDIPNP 128

Query: 416 PTVTD 420
           P ++ 
Sbjct: 129 PRISG 133

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 65.4 bits (159), Expect = 5e-13
 Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 8/112 (7%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS--------PISQYIIEKKP 450
                K          +P  +D     V L W+PP               +  Y +    
Sbjct: 7   GDEETKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISS 66

Query: 451 KYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
                +   +     T  ++ DLK   +Y  +V A      G PS+A    T
Sbjct: 67  TGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTT 118

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 72.4 bits (178), Expect = 9e-15
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 3/99 (3%)

Query: 213 KVSPYINRD--QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 270
           + +P  +             GS     +  IG P+P   W      + + +   I N + 
Sbjct: 98  QATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEH 157

Query: 271 STKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
            T L + +  ++  +G Y + + N +GT      V + D
Sbjct: 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 20/102 (19%), Positives = 44/102 (43%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           ++ D+  + G   +    ++G P+P  +W      +I   ++K+ +D ++  L V   ++
Sbjct: 13  EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQ 72

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
            D G+YT    N  G  + ++K+ +   P    G        
Sbjct: 73  EDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYY 114

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 211 AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDD 269
           +    P+  +    D+ V+ G     D  V G P P   W  +   +      K++  ++
Sbjct: 5   SSGFRPHFLQ-APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVREN 63

Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
               L +      D+GIYT    N  G +  + ++ V    S P
Sbjct: 64  GVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 69.5 bits (170), Expect = 1e-14
 Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 233 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST----KLKVFDSKRGDSGIYT 288
               +  V G P PT  WL N   +       +    +       L        ++G YT
Sbjct: 22  EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81

Query: 289 LAVKNSWGTDKGTAKVTVLDIPSPPEG--PLKPSNIT 323
           L  KN  GT   T     L  P P +   P  P  +T
Sbjct: 82  LIAKNPLGTANQTINGHFLKEPFPVDEVSPTPPITVT 118

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 74.2 bits (182), Expect = 1e-14
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 190 LAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE 249
           L+                 A A+K    +       + ++ G       NV G+P P   
Sbjct: 196 LSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 255

Query: 250 WLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
           WL N+  + S D   +  +  ++    +      DSG Y L VKN +G++     V+V 
Sbjct: 256 WLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 35/255 (13%), Positives = 71/255 (27%), Gaps = 37/255 (14%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKS 271
              P+         +V    N      V   +      W  ++  I   ++    +   +
Sbjct: 5   FTGPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICT 62

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEW 331
             L + +  + D+GIY + +K+  G DK   K+             K   ++ +   ++ 
Sbjct: 63  --LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS 120

Query: 332 RAPRDDGGTDILHYVVEKMDMETGRW------------VPMGDVSGTYT-RAENLIEGHD 378
            A     G  +  +V   ++     W            V  G        +         
Sbjct: 121 TA----EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDK 176

Query: 379 YNFRVKAVNKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKK 435
             + ++  +       ++ L  Q+   A   F R  +                E    + 
Sbjct: 177 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIA------------EKNRARV 224

Query: 436 DGGSPISQYIIEKKP 450
            GG P    I E K 
Sbjct: 225 LGGLPDVVTIQEGKA 239

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 5/139 (3%)

Query: 186 EFRVLAVNKGG----PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI 241
            + V+  +  G      +  D     +         ++   L       G      +   
Sbjct: 75  IYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFV-TY 133

Query: 242 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 301
                   W  N   I   DR K     +   L++ +    D G Y + + +     + T
Sbjct: 134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT 193

Query: 302 AKVTVLDIPSPPEGPLKPS 320
             ++            +  
Sbjct: 194 VDLSGQAYDEAYAEFQRLK 212

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 20/86 (23%), Positives = 31/86 (36%)

Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
           +   +V  G N  F +NV  +P    +W  N + +    +    N      L++ D    
Sbjct: 15  MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTD 74

Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVLD 308
           DSG Y     N  G     A + V  
Sbjct: 75  DSGTYRAVCTNYKGEASDYATLDVTG 100

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 3/107 (2%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGPW 455
            P +  D       P          D V + W      K    S +  Y +  +  +   
Sbjct: 8   FPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSAS 67

Query: 456 EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
            K         + +   LK    YEF V+          S  +   T
Sbjct: 68  AKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATT 114

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 6/94 (6%)

Query: 305 TVLDIPSPPEGP--LKPSNITKSSCNLEWRAP---RDDGGTDILHYVVE-KMDMETGRWV 358
           +V D+ +P   P  ++   +T  +  + W      ++   +++  Y V  +         
Sbjct: 11  SVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKY 70

Query: 359 PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES 392
              D +     A  L     Y F V        S
Sbjct: 71  KSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSS 104

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 68.9 bits (169), Expect = 2e-14
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 467
             P +         G+  V L W  P++  G  I +Y I+   K    +    + A  T 
Sbjct: 9   AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTR 67

Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            +V  LK G  Y F+V A    G G  S+A    T KP
Sbjct: 68  ATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKP 105

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDV 363
           +    PS     ++     ++S +L W+ P    G  IL Y ++     +  +       
Sbjct: 6   SGQAAPSQVVV-IRQERAGQTSVSLLWQEPEQPNGI-ILEYEIKYYEKDKEMQSYSTLKA 63

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGES 392
             T      L  G  Y F+V+A    G  
Sbjct: 64  VTTRATVSGLKPGTRYVFQVRARTSAGCG 92

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
            P +          +  + + WQ+P    G  I  YE++  E+        T   + T+ 
Sbjct: 10  APSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRA 68

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATS 469
           DRP     TD   D + + W  P+      +S+Y +          E             
Sbjct: 3   DRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAE 58

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503
           +  L+ G EY   V+A++     +P   +     
Sbjct: 59  LQGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 92

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 94

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 367
           +I  P    L  +++   S  + W +P+      +  Y V     E G         G  
Sbjct: 1   NIDRPKG--LAFTDVDVDSIKIAWESPQGQ----VSRYRVTYSSPEDGIHELFPAPDGEE 54

Query: 368 TRA--ENLIEGHDYNFRVKAVNKIGESLPLV 396
             A  + L  G +Y   V A++   ES PL+
Sbjct: 55  DTAELQGLRPGSEYTVSVVALHDDMESQPLI 85

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 458
             I      G P +P         +  + L WTPP+ D    I+ Y +  K      E+ 
Sbjct: 7   GDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQR 63

Query: 459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
             +    +   +  LK    Y FR+ A +  G G  +   +  T
Sbjct: 64  ITIEPGTSYR-LQGLKPNSLYYFRLAARSPQGLGASTAEISART 106

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 67.0 bits (164), Expect = 9e-14
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
           T   +P  P    K    +++S  L W  PR D    I +Y +   D E G    +    
Sbjct: 13  TQTGVPGQPLN-FKAEPESETSILLSWTPPRSDT---IANYELVYKDGEHGEEQRITIEP 68

Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
           GT  R + L     Y FR+ A +  G    
Sbjct: 69  GTSYRLQGLKPNSLYYFRLAARSPQGLGAS 98

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
           VPG+P   +A    +  I + W  P S+    I  YE+  ++   G   +IT +P  +  
Sbjct: 17  VPGQPLNFKAEPESETSILLSWTPPRSDT---IANYELVYKDGEHGEEQRITIEPGTSYR 73

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 280
           Q+       G + ++   +      T+  W      + + ++++I  +D    L V D  
Sbjct: 7   QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDIT 66

Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTV 306
           + D G Y   V N +G D   A++ V
Sbjct: 67  KLDDGTYRCKVVNDYGEDSSYAELFV 92

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
            L+D  V  G        +         W  N + +   DR K+V   +  KL + ++  
Sbjct: 13  PLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLVIANALT 70

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
            D G Y  A           AKV V+  PS
Sbjct: 71  EDEGDYVFAPDA--YNVTLPAKVHVISGPS 98

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 71.3 bits (174), Expect = 4e-14
 Identities = 35/216 (16%), Positives = 58/216 (26%), Gaps = 20/216 (9%)

Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNL--EWRAPRDDGGTDI---LHYVVEKMDMETG 355
             K           GP +    T+   +L   W      G         Y +E    +  
Sbjct: 9   DPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLC 68

Query: 356 RWVPMGDVSGTYTR-----AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
           R        G           +         RV A +       ++  + +         
Sbjct: 69  RLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVV------LL 122

Query: 411 DRPGQPTVTDWG-KDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITAT 468
           D P            HV L W PP +   +   +Y ++     G      + +    T  
Sbjct: 123 DAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTEC 182

Query: 469 SVPDLKEGEEYEFRVIAVNKGGP--GEPSKASAPVT 502
            + +L+    Y F V A        G  S+ S PV+
Sbjct: 183 VLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVS 218

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A Length = 227

 Score = 41.6 bits (97), Expect = 3e-04
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 4/103 (3%)

Query: 287 YTLAVKNSWGTDKGTAKVTVLDI--PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILH 344
             L V  + G  +    + + ++     P G +           L W  P +   T  + 
Sbjct: 97  LELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIR 156

Query: 345 YVVEKMDMETGRWVPMGDVSGTYTRAE--NLIEGHDYNFRVKA 385
           Y V+    +    V   ++    T     NL     Y F V+A
Sbjct: 157 YEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA 199

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
            L D++V  G        +     P K W   +  +   D++ +  +    +L V + + 
Sbjct: 14  ALKDLEVLEGGAATLRCVLSSVAAPVK-WCYGNNVLRPGDKYSLRQEGAMLELVVRNLRP 72

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
            DSG Y+ +     G    +A +TV  +PS P
Sbjct: 73  QDSGRYSCSF----GDQTTSATLTVTALPSGP 100

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 67.4 bits (165), Expect = 5e-14
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 222 QLSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 280
           +L  ++V  G +  F+  +          W     T+ S  RF+     +   L V ++ 
Sbjct: 14  RLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAA 73

Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
             D+G    +V+         A + V +   P  G
Sbjct: 74  PSDAGEVVFSVRG----LTSKASLIVRERSGPSSG 104

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 67.6 bits (165), Expect = 5e-14
 Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 8/103 (7%)

Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANIT 466
           G  D P    V       + + W   +         Y I      G    +   VP  + 
Sbjct: 2   GVSDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVH 57

Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA---SAPVTCKPR 506
             ++  LK G +Y   V AV    P          +P++   R
Sbjct: 58  TATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYR 100

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D* Length = 114

 Score = 56.5 bits (136), Expect = 5e-10
 Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 11/119 (9%)

Query: 307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT 366
           + +   P   L+    T +S  + W + R        +Y +   +      V    V G 
Sbjct: 1   MGVSDVPRD-LEVVAATPTSLLISWDSGRGS----YQYYRITYGETGGNSPVQEFTVPGP 55

Query: 367 YTRA--ENLIEGHDYNFRVKAVN---KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTD 420
              A    L  G DY   V AV       +      +SPI+        D+P Q     
Sbjct: 56  VHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTE-IDKPSQHHHHH 113

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 71.7 bits (176), Expect = 5e-14
 Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
           K  P   + +   ++   G++   +  + G P     W  +   + S  ++KI++++  T
Sbjct: 190 KEPPVFRK-KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT 248

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
            + + +    D G Y     N  G+      +T+
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 273
             P+    +   + +  G +  F  +V G       W  ++  I     +K+   + +  
Sbjct: 4   APPFF-DLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62

Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
           L V    +GD+G YT    N  G D  +A++ V + P 
Sbjct: 63  LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR 100

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 3/111 (2%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
           +  P   +       V+   +  ++  + G P     W  ++  I    +F++   +   
Sbjct: 96  QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
            L++++    DSG YT    N+ G+   +  + V     PP    KP  + 
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVE 203

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 2/101 (1%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEK 457
            P   +     P   G  + ++     + + W  P +  G  ++ Y I  +         
Sbjct: 7   GPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRV 65

Query: 458 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS 498
              +P       V  L     Y   V A+   G G+ S ++
Sbjct: 66  THYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 106

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 56.7 bits (137), Expect = 5e-10
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVV--EKMDMETGRWVPMGDVSG 365
           D+P P    L  S I  +S  + W+ P +  G  +  Y +  E+ +    R         
Sbjct: 16  DVPGPVG-HLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVT 73

Query: 366 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP 410
              R   L     Y   V A+   G+       S I++  P   P
Sbjct: 74  LEYRVTGLTALTTYTIEVAAMTSKGQGQVS--ASTISSGVPPSGP 116

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
           VPG       +++    +K+ WQ+P    G  + GY +   E            P  T
Sbjct: 17  VPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVT 73

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 71.1 bits (173), Expect = 1e-13
 Identities = 27/218 (12%), Positives = 52/218 (23%), Gaps = 32/218 (14%)

Query: 310 PSPPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSG 365
           P        P  +     +    L W    +  G   + +  +        W+ +     
Sbjct: 3   PLKS-----PQKVEVDIIDDNFILRWNRSDESVGN--VTFSFDYQKTGMDNWIKLSGCQN 55

Query: 366 TYTRA-----ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTD 420
             +         L    +   R++A  +   S      S    +     P     P V  
Sbjct: 56  ITSTKCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGP-----PEVHL 109

Query: 421 WGK-DHVDLEWTPPKKDGGS-----PISQYIIEKKPKYGPWEKACIVPANITATSVPDLK 474
             +   + +  +P  KD            Y +         E+   +    +   +  L 
Sbjct: 110 EAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEE--RIENIYSRHKIYKLS 167

Query: 475 EGEEYEFRVIAVNKGGP--GEPSKASAPVTCKPRFVAP 510
               Y  +V A        G  S      T     + P
Sbjct: 168 PETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPP 205

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 69.9 bits (170), Expect = 3e-13
 Identities = 26/204 (12%), Positives = 56/204 (27%), Gaps = 16/204 (7%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD-----ILHYVVEKMDMETGRWVPMGDVS 364
             PPE  L+  +    +  +       D            Y +      +G    + ++ 
Sbjct: 102 IGPPEVHLEAED---KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIY 158

Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
             + +   L     Y  +VKA       + +                 P    V+   ++
Sbjct: 159 SRH-KIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQN 217

Query: 425 HVDLEWTPPKKDGGSPI---SQYIIEKKPKYGPWEKACIVPANITATS---VPDLKEGEE 478
           +V L+W     +    +     ++      +    K      N+  T      ++ +   
Sbjct: 218 YV-LKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGI 276

Query: 479 YEFRVIAVNKGGPGEPSKASAPVT 502
           Y  RV A +       S+     T
Sbjct: 277 YLLRVQASDGNNTSFWSEEIKFDT 300

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 17/150 (11%), Positives = 36/150 (24%), Gaps = 27/150 (18%)

Query: 80  QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP--GEPSDPTAPHIARAKKGKCYHLVGTL 137
           + E    + K+  L     Y  +V A        G  S           +      +   
Sbjct: 153 RIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVS 212

Query: 138 LKDS---------------------IYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKV 176
           +++                       + +        ++   P  E    T+   P+   
Sbjct: 213 VQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQN-- 270

Query: 177 LDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
             + +   Y  RV A +       S+    
Sbjct: 271 --VFQKGIYLLRVQASDGNNTSFWSEEIKF 298

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 69.4 bits (169), Expect = 1e-13
 Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 24/200 (12%)

Query: 318 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENL 373
            P N+  +S N    L+W +P    G   L +  + +     +       + T     +L
Sbjct: 4   PPENVRMNSVNFKNILQWESPAFAKGQ--LTFTAQYLSYRIFQDK-CMQTTLTECDFSSL 60

Query: 374 IEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPP 433
            +  D+  RV+A      S  +            G P    +        D + + +  P
Sbjct: 61  SKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLA-----DCLHMRFLAP 115

Query: 434 KKDGGS---------PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI 484
           K +                Y ++   +    +    +        + +L+    Y  +V 
Sbjct: 116 KIENEYETWTMKNVYNSWTYNVQYWKQGTDEKF--QITPQYDFEVLRNLEPWTTYCVQVR 173

Query: 485 AVNKGGPGEPSKASAPVTCK 504
                      + S PV  +
Sbjct: 174 GFLPDRNK-AGEWSEPVCEQ 192

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens} Length = 201

 Score = 47.0 bits (111), Expect = 4e-06
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 428 LEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGEEYEFRVIA 485
           L+W  P    G     +  +    Y  ++  C+     T T      L +  ++  RV A
Sbjct: 19  LQWESPAFAKGQLT--FTAQYL-SYRIFQDKCM---QTTLTECDFSSLSKYGDHTLRVRA 72

Query: 486 VNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQD 519
                  +  + +           P +    L D
Sbjct: 73  EFADEHSDWVQITFSPVDDTIIGPPGMQVEVLAD 106

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 29/118 (24%), Positives = 37/118 (31%), Gaps = 13/118 (11%)

Query: 198 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 257
           G      AP               +L   K+  G    F   V G P P   W  +   I
Sbjct: 1   GSSGSSGAPFFEM-----------KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQI 49

Query: 258 I-SKDRFKIVNDDKST-KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
               D + I  D   T  L    S   D G YT+   N  G    T ++ V  + S P
Sbjct: 50  SPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 66.0 bits (161), Expect = 2e-13
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 2/94 (2%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITAT 468
           P       VT      + L W  P+   G  +  Y ++   K          +  +    
Sbjct: 8   PPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLKTSENRA 66

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
            +  LK G  Y  +V A ++ G G   +     T
Sbjct: 67  ELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQT 100

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE--KMDMETGRWVPMGD 362
           +    P      ++ +  + SS +L W  PR   G  +L Y V+  +   E    V    
Sbjct: 3   SGSSGPPAVSD-IRVTRSSPSSLSLAWAVPRAPSGA-VLDYEVKYHEKGAEGPSSVRFLK 60

Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGES 392
            S        L  G  Y  +V+A ++ G  
Sbjct: 61  TSENRAELRGLKRGASYLVQVRARSEAGYG 90

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
            P   S    T      + + W  P +  G A+  YEV+  E+ +     +    
Sbjct: 7   GPPAVSDIRVTRSSPSSLSLAWAVPRAPSG-AVLDYEVKYHEKGAEGPSSVRFLK 60

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKSTKLKVFDSKR 281
           L D  VR G +    I V GEP P   WL N   +   + RF    +    +L++  ++R
Sbjct: 12  LMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER 71

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTV 306
           GD+G YT    N +G  +  A++ V
Sbjct: 72  GDAGFYTCKAVNEYGARQCEARLEV 96

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
           +V+P I    L +     G + E      G P P   W  ++ T++      + + +++ 
Sbjct: 8   RVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN- 65

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
            L +   ++ D G+YT    +  G  K  A   +        
Sbjct: 66  -LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 106

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITAT 468
              P +  V       + + W        S +S Y I      G    +   VP + +  
Sbjct: 5   SSVPTKLEVVAATPTSLLISWDAS----SSSVSYYRITYGETGGNSPVQEFTVPGSSSTA 60

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           ++  L  G +Y   V A         S   +P +
Sbjct: 61  TISGLSPGVDYTITVYAYYSYYDLYYS--YSPSS 92

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 7/88 (7%)

Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 368
           + S P   L+    T +S  + W A        + +Y +   +      V    V G+ +
Sbjct: 4   VSSVPTK-LEVVAATPTSLLISWDASSSS----VSYYRITYGETGGNSPVQEFTVPGSSS 58

Query: 369 RA--ENLIEGHDYNFRVKAVNKIGESLP 394
            A    L  G DY   V A     +   
Sbjct: 59  TATISGLSPGVDYTITVYAYYSYYDLYY 86

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 71.0 bits (174), Expect = 4e-13
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 1/108 (0%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
           PY   + L  ++   G        V G P     W      + S   +K+   +    L 
Sbjct: 6   PYF-IEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
           +      D G YT   +NS G    +A + + +   PP    K  ++ 
Sbjct: 65  INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVH 112

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 70.6 bits (173), Expect = 6e-13
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 4/126 (3%)

Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
           ++   A N  G    S   A       +V P+ +  +   + +  G +  F  +V G   
Sbjct: 171 QYNCSASNPLGTASSS---AKLTLSEHEVPPFFDL-KPVSVDLALGESGTFKCHVTGTAP 226

Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305
               W  ++  I     +K+   + +  L V    +GD+G YT    N  G D  +A++ 
Sbjct: 227 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 286

Query: 306 VLDIPS 311
           V + P 
Sbjct: 287 VQEPPR 292

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 20/104 (19%), Positives = 38/104 (36%)

Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 279
             +L D+    G    F+  + G       W  +   +      +         L++  +
Sbjct: 105 ARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQT 164

Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
            +   G Y  +  N  GT   +AK+T+ +   PP   LKP ++ 
Sbjct: 165 DQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVD 208

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
           K  P   + +   ++   G++   +  + G P     W  +   + S  ++KI++++  T
Sbjct: 382 KEPPVFRK-KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT 440

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
            + + +    D G Y     N  G+D     +T+     PP    K S+I+
Sbjct: 441 SIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA---PPRFVKKLSDIS 488

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 3/111 (2%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
           +  P   +       V+   +  ++  + G P     W  ++  I    +F++   +   
Sbjct: 288 QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 347

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
            L++++    DSG YT    N+ G+   +  + V     PP    KP  + 
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK---EPPVFRKKPHPVE 395

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 64.1 bits (156), Expect = 7e-11
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVNDDKS 271
           K  P     +LSDI    G   +    + G    +  W  +   I+   D   I   +  
Sbjct: 475 KAPPRF-VKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENI 533

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
             L+   ++  ++G YT  +KN  GT +  A ++VL+
Sbjct: 534 ATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 64.4 bits (157), Expect = 5e-13
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 8/107 (7%)

Query: 202 DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD 261
           +  AP+    +K+             V A +  +F     G P+PT  WL N      + 
Sbjct: 1   NKRAPYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEH 53

Query: 262 RFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
           R       ++   L +      D G YT  V+N +G+   T  + V+
Sbjct: 54  RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 64.4 bits (157), Expect = 6e-13
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-----VN 267
             +P I   +       +  ++     V G P P  +W  N   +              +
Sbjct: 2   HFAPTITFLE----SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 268 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
            +    L++ +    ++G YTL  KN +G D+       +  P
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
            ++D+ V+A     F   V  E +  K W  N + +    R  I +  +  KL + D + 
Sbjct: 14  DIADLTVKAAEQAVFKCEVSDEKVTGK-WYKNGVEVRPSKRITISHVGRFHKLVIDDVRP 72

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIP--SPPEG 315
            D G YT        +   +AK+  L+I    P  G
Sbjct: 73  EDEGDYTFVPDGYALS--LSAKLNFLEIKVSGPSSG 106

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 70.9 bits (173), Expect = 6e-13
 Identities = 49/332 (14%), Positives = 97/332 (29%), Gaps = 37/332 (11%)

Query: 14  LSAGTTLKFDANIIGEPVP-HVDW-RAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGN 71
              GTT      +   P P H+ W           P             + + ++  +G 
Sbjct: 435 YQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGG 494

Query: 72  HPIWEKCAQTEGDTPKGKVLDLIEGNQYE----FRVLAVNKGGPGE---------PSDPT 118
           + I     Q      K K +  +          ++  AVNK G GE           + T
Sbjct: 495 NKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEIT 554

Query: 119 APHIARAKKGK-----C------------YHLVGTLLKDSIYEQLKRSGLFDQFHLCPIW 161
                +  + +     C            Y L    L   + E                 
Sbjct: 555 LQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNA 614

Query: 162 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD 221
              + +  D    ++ +    +Q ++  LA ++             +   ++V+P I   
Sbjct: 615 TMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHC--VVRQLTVLERVAPTITG- 671

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
            L +     G + E      G P P   W  ++ T++      + + +++  L +   ++
Sbjct: 672 NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIRRVRK 729

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
            D G+YT    +  G  K  A   +       
Sbjct: 730 EDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 761

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 59.8 bits (144), Expect = 2e-09
 Identities = 51/372 (13%), Positives = 104/372 (27%), Gaps = 76/372 (20%)

Query: 213 KVSPYIN--RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK 270
              P++       S ++   G         +G P P  +W  N I + S    K      
Sbjct: 325 HEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKA----- 379

Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDK--GTAKVTVLDIPSPPEGPL----------- 317
              L + +    D+G YT+ + N    +K      + V   P   E  L           
Sbjct: 380 GHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGT 439

Query: 318 ------------KPSNIT-------------KSSCNLEWRAPRDDGGTDILHYVVEKMDM 352
                        P +I                + ++    P ++  +        K+++
Sbjct: 440 TQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEV 499

Query: 353 ETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFGR 409
              ++  +   + T +            ++ +AVNK+G     +            P   
Sbjct: 500 NKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRG-----PEIT 554

Query: 410 PDRPGQPTVTD--------WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIV 461
                QPT  +              +L W    K G  P+  ++ E              
Sbjct: 555 LQPDMQPTEQESVSLWCTADRSTFENLTW---YKLGPQPLPIHVGELPTPVCKNLDTLWK 611

Query: 462 PANITATS---------VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVI 512
                 ++         + +    ++ ++  +A ++            +T   R VAP I
Sbjct: 612 LNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKR-HCVVRQLTVLER-VAPTI 669

Query: 513 DQYALQDMTAQE 524
               L++ T   
Sbjct: 670 TG-NLENQTTSI 680

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 34/298 (11%), Positives = 71/298 (23%), Gaps = 59/298 (19%)

Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
            ++                     R+  ++   ++  +  I                  +
Sbjct: 100 AYKCFYRETDL--ASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNL 157

Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT 305
                          D  +I  D K     +       +G+     K +  + +    + 
Sbjct: 158 NVSLCARYPEKRFVPDGNRISWDSKKG-FTIPSYMISYAGMVFCEAKINDESYQSIMYIV 216

Query: 306 VLDIPSPPEGPLKPSNITKS--------SC----------NLEWRAPRDDGGTDILHYVV 347
           V+      +  L PS+  +         +C          +  W  P        L    
Sbjct: 217 VVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 276

Query: 348 EKMDMETGRWVPMGDV---------SGTYT-RAENLIEGHDYNFRVKAVNK--------- 388
            K    +     +  +          G YT  A + +     +  V+   K         
Sbjct: 277 LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGM 336

Query: 389 -------IGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS 439
                  +GE + +  +         G P     P +  W K+ + LE     K G  
Sbjct: 337 ESLVEATVGERVRIPAKYL-------GYP----PPEIK-WYKNGIPLESNHTIKAGHV 382

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 15/139 (10%)

Query: 187 FRVLAVNKGGPGEPS-DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
           +  +       G PS     P +             Q   + ++A +  +      G+  
Sbjct: 12  WLCVETRAASVGLPSVSLDLPRL-----------SIQKDILTIKANTTLQI--TCRGQRD 58

Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTK-LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304
               W  N      +      +D    K L +      D+G Y    + +         V
Sbjct: 59  LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118

Query: 305 TVLDIPSPPEGPLKPSNIT 323
                P       +   + 
Sbjct: 119 QDYRSPFIASVSDQHGVVY 137

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 64.4 bits (157), Expect = 7e-13
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 468
            PD P Q    +  +    L W PP+    +P+  Y I+      P  +A   P +    
Sbjct: 7   GPDGPTQLRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQA-ETPGSAVDY 61

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
            + DL     Y   V  +       P+  + 
Sbjct: 62  PLHDLVLHTNYTATVRGLRGPNLTSPASITF 92

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 53.6 bits (129), Expect = 4e-09
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           P  P   L+  N+T+    L W+ P++     +  Y ++               S     
Sbjct: 8   PDGPTQ-LRALNLTEGFAVLHWKPPQNP----VDTYDIQVTAPGAPPLQAETPGSAVDYP 62

Query: 370 AENLIEGHDYNFRVKAVNKIGESLPL 395
             +L+   +Y   V+ +     + P 
Sbjct: 63  LHDLVLHTNYTATVRGLRGPNLTSPA 88

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 64.0 bits (156), Expect = 9e-13
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 410 PDRPGQPTVTDWGKDH--VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITA 467
           PD P    ++   +    +   W PP    G  I +YI+E        +      A    
Sbjct: 8   PDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRS--GSKMWASQRAASNF 64

Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
           T + +L     Y  RV AV   G G  S + +  T K 
Sbjct: 65  TEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKG 102

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 308 DIPSPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT 366
             P  P    L      +      W  P    G  I  Y+VE     +  W      +  
Sbjct: 6   SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHG-LIREYIVEYSRSGSKMWASQR-AASN 63

Query: 367 YTRAENLIEGHDYNFRVKAVNKIGES 392
           +T  +NL+    Y  RV AV   G  
Sbjct: 64  FTEIKNLLVNTLYTVRVAAVTSRGIG 89

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 89  KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
           ++ +L+    Y  RV AV   G G  SD  
Sbjct: 66  EIKNLLVNTLYTVRVAAVTSRGIGNWSDSK 95

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
           ++ +L+    Y  RV AV   G G  SD  
Sbjct: 66  EIKNLLVNTLYTVRVAAVTSRGIGNWSDSK 95

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 67.5 bits (164), Expect = 9e-13
 Identities = 33/232 (14%), Positives = 71/232 (30%), Gaps = 15/232 (6%)

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG--PLKPSNIT-----KSSCNLEWRAP 334
           G   +    +    G +  TA   +  +P+       L    +          N  W++ 
Sbjct: 1   GMLSLLNTTILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSS 60

Query: 335 RDDGGTDI-LHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL 393
            +   T++ LHY  +  D +  +       S   T    L +   + ++   V       
Sbjct: 61  SEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPRE 120

Query: 394 PLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG 453
           P    + +        P  P   T+    +  ++L W        +   +++++ +  + 
Sbjct: 121 PRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWD 177

Query: 454 PWEKACIVPANITATSVPDLKEGEEYEFRV---IAVNKGGPGEPSKASAPVT 502
                          S+P +   + Y FRV        G     S+ S P+ 
Sbjct: 178 HSWTE-QSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIH 228

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 63.5 bits (155), Expect = 9e-13
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKR 281
             ++ +  G     D  V G P P   W  N  T+ S D  K++ ++     L     + 
Sbjct: 12  PENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA 71

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVL 307
            D+G Y    KN  G    T ++ VL
Sbjct: 72  SDAGAYACVAKNRAGEATFTVQLDVL 97

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 6/101 (5%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
            + P      +       L WT P        + Y++      G  ++  ++P  IT+  
Sbjct: 8   LEAPRDLEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEI-LLPGGITSHQ 62

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
           +  L     Y  R+ A+       P   S   T   R   P
Sbjct: 63  LLGLFPSTSYNARLQAMWGQSLLPPVSTSF-TTGGLRISGP 102

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 359
           G++  + L+    P   L+   +T  +  L W  P          Y++            
Sbjct: 1   GSSGSSGLE---APRD-LEAKEVTPRTALLTWTEPPVR----PAGYLLSFHTPGGQTQEI 52

Query: 360 MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPL 395
           +     T  +   L     YN R++A+       P+
Sbjct: 53  LLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPV 88

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 3/107 (2%)

Query: 207 HIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKI 265
           H +   K +P     +    KV  G + + +  +   P P   W  N+  +  + DR  +
Sbjct: 7   HHSHEHKRAPMFIY-KPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISL 65

Query: 266 V-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
             ++     L + D  + D+G YT++  N  G      ++ V   P+
Sbjct: 66  YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSK 280
            L D+ V+ GS+  F   +         W  +   + + +  +I         L +    
Sbjct: 19  DLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLA 78

Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
             DSG          G  + +A + V + PS
Sbjct: 79  LKDSGTIYFEA----GDQRASAALRVTEKPS 105

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 1/86 (1%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P               + L W  P++  G  I  Y I    K      + +  +      
Sbjct: 8   PSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTAR 66

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPS 495
           +  L+ G  Y  +V A    G G+ S
Sbjct: 67  IDGLRPGMVYVVQVRARTVAGYGKFS 92

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS-GT 366
             PS     +   + T  S  L W  P    G  IL Y +   + E   +      S   
Sbjct: 6   SGPSTVPI-MHQVSATMRSITLSWPQPEQPNGI-ILDYEIRYYEKEHNEFNSSMARSQTN 63

Query: 367 YTRAENLIEGHDYNFRVKAVNKIG 390
             R + L  G  Y  +V+A    G
Sbjct: 64  TARIDGLRPGMVYVVQVRARTVAG 87

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 10/60 (16%), Positives = 14/60 (23%), Gaps = 1/60 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
            P               I + W QP    G  I  YE+   E+    +            
Sbjct: 7   GPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSSMARSQTNTA 65

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 6/94 (6%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKACIVPANITATSVP 471
           P   T+       V L W P      +  + Y++   P      E+   V        + 
Sbjct: 12  PRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEEEREVQVGRPEVLLD 66

Query: 472 DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            L+ G +YE  V ++      E     A      
Sbjct: 67  GLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSG 100

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 359
           G++  +    P PP   L  + +T  + +L W+           HY+V            
Sbjct: 1   GSSGSSG---PLPPPRALTLAAVTPRTVHLTWQPS-----AGATHYLVRCSPASPKGEEE 52

Query: 360 MGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
             +V         + L  G DY   V+++     S     ++      P
Sbjct: 53  EREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGP 101

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 5/94 (5%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
               +             +     P   W  +   +   +   +  D +  +L + ++K 
Sbjct: 16  DKVSLTFTTSERVVLTCELSRVDFPAT-WYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
            DSG +                VTV D   P  G
Sbjct: 75  QDSGEFECRT----EGVSAFFGVTVQDPSGPSSG 104

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 16/116 (13%)

Query: 198 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 257
           G      A                +L++++V       F       P  T  W    + +
Sbjct: 1   GSSGSSGANCFTE-----------ELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLEL 48

Query: 258 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
            +  + +   +  + +L +   ++ DS  YT  +    G  +  A++ V    S P
Sbjct: 49  RASGKHQPSQEGLTLRLTISALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGP 100

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 6/93 (6%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
            L + +   G+       +         W     T+   DR  +  D    +L++     
Sbjct: 25  GLRNEEATEGATAVLRCELSKMAPVE--WWKGHETLRDGDRHSLRQDGARCELQIRGLVA 82

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
            D+G Y        G ++ +A +TV  +PS P 
Sbjct: 83  EDAGEYLCMC----GKERTSAMLTVRAMPSGPS 111

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 65.7 bits (160), Expect = 3e-12
 Identities = 27/126 (21%), Positives = 47/126 (37%), Gaps = 10/126 (7%)

Query: 201 SDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK 260
           ++  AP+    +K+             V A +  +F     G P+PT  WL N      +
Sbjct: 11  NNKRAPYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE 63

Query: 261 DRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS--PPEGPL 317
            R       ++   L +      D G YT  V+N +G+   T  + V++     P     
Sbjct: 64  HRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAG 123

Query: 318 KPSNIT 323
            P+N +
Sbjct: 124 LPANAS 129

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 11/112 (9%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL-----------CNDITIISKDRFK 264
           P +     ++     G + EF   V  +  P  +W+            + +  +   +  
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177

Query: 265 IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
            +N   +  L +F+    D+G Y   V N  G    +A +TVL     P   
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGRE 229

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 68.8 bits (168), Expect = 3e-12
 Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 11/185 (5%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
              PYI   Q+    + AG        V G PI +  W  ++  +    + K+  +    
Sbjct: 525 YGLPYI--RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG--- 579

Query: 273 KLKVFD-SKRGDSGIYTLAVKNSWG-TDKGTAKVTVLDIPSPPEGPLKPSNITK-SSCNL 329
            L + +  +  D   YT   KN  G + +G+ +V V+ +P       +           L
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639

Query: 330 EWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT--RAENLIEGHDYNFRVKAVN 387
               P  D   +I  + ++   +     +    V    +    E +   H  NF   A N
Sbjct: 640 HCSVPGGDLPLNI-DWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARN 698

Query: 388 KIGES 392
             G  
Sbjct: 699 LAGHQ 703

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 68.0 bits (166), Expect = 5e-12
 Identities = 65/351 (18%), Positives = 105/351 (29%), Gaps = 90/351 (25%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-----VNDDK 270
           P I +    +  +  G +        G P P   W  +   I + DR+++     VN D 
Sbjct: 430 PVIRQA-FQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488

Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP--SPPEGPLKPSNITKSS-- 326
            + L +      D G+Y    K+  G  + +AK+ V  +P     E       I      
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQME----KKAIVAGETL 544

Query: 327 ---C--------NLEWRAPRDDG-------------GTDILHYVVEKMDMETGRWVPMGD 362
              C        ++ W   RD+              GT I+  V    D           
Sbjct: 545 IVTCPVAGYPIDSIVWE--RDNRALPINRKQKVFPNGTLIIENVERNSD----------- 591

Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGE----SLPLVCQSP--ITAKDPFGRPDRPGQP 416
              TYT                A N+ G     SL +       I        P + GQ 
Sbjct: 592 -QATYT--------------CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQY 636

Query: 417 TVTDW---GKDH-VDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
                   G D  ++++WT    D G  IS+                 V    +  ++  
Sbjct: 637 LTLHCSVPGGDLPLNIDWT---LD-GQAISE---------DLGITTSRVGRRGSVLTIEA 683

Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQ 523
           ++      F   A N  G  + +     V   PR++    D+   Q   A+
Sbjct: 684 VEASHAGNFTCHARNLAGHQQFT-TPLNVYVPPRWILEPTDKAFAQGSDAK 733

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 11/111 (9%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
                  +       V  G    F     G PI T  W+ +   I   +           
Sbjct: 341 TAPLSA-KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV--------- 390

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
            L++   K+ D G+Y   V+N   + + +A++ +     PP         T
Sbjct: 391 -LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEET 440

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 61.5 bits (149), Expect = 6e-10
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 9/144 (6%)

Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRAGSNFEFDINVI 241
            ++    ++         T   +   + +S      ++  +         S         
Sbjct: 214 SYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ 273

Query: 242 GEPIPTKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 299
           G P+P   W         K    + +     S  L + D+   DSG Y   V NS G + 
Sbjct: 274 GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 333

Query: 300 GTAKVTVLDIPSPPEGPLKPSNIT 323
               +TV    +P    + P   T
Sbjct: 334 VETVLTVT---APLSAKIDPPTQT 354

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 5/113 (4%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVN-DDK 270
            V P I      +   + G       +V G  +P   +W  +   I             +
Sbjct: 616 MVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRR 675

Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
            + L +   +   +G +T   +N  G  + T  + V     PP   L+P++  
Sbjct: 676 GSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV---PPRWILEPTDKA 725

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 53.4 bits (128), Expect = 2e-07
 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 14/140 (10%)

Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEF 236
            +   +   F   A N  G  + +             V P     + +D     GS+ + 
Sbjct: 683 AVEASHAGNFTCHARNLAGHQQFT-------TPLNVYVPPRW-ILEPTDKAFAQGSDAKV 734

Query: 237 DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKN 293
           +    G P P   W         + +    +D+   +   L V + ++ + G Y     N
Sbjct: 735 ECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN 794

Query: 294 SWGTDKGTAKVTVLDIPSPP 313
             G+    + V ++ + +  
Sbjct: 795 GIGSG--LSAVIMISVQAHH 812

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 19/142 (13%), Positives = 43/142 (30%), Gaps = 11/142 (7%)

Query: 187 FRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP 246
           F  +A+   G    S   A +   A +  P   ++  + I     +  E +    G P+P
Sbjct: 14  FAAVALIACG----SQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMP 69

Query: 247 TKEWLCNDITIISKDRFKIVNDDKST----KLKVFDS-KRGDSGIYTLAVKNSWGTDKGT 301
              W+ +D T +                    +  D  +   + +Y    +N +G+    
Sbjct: 70  EIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSI--I 127

Query: 302 AKVTVLDIPSPPEGPLKPSNIT 323
           ++   +            +   
Sbjct: 128 SRDVHVRAVVAQYYEADVNKEH 149

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 66.1 bits (161), Expect = 3e-12
 Identities = 31/130 (23%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 197 PGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT 256
           P    D  AP+  R +++           + V A +   F     G P P+  WL N   
Sbjct: 3   PDTGVDTGAPYWTRPERMDK-------KLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 55

Query: 257 IISKDRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS--PP 313
              + R   I    +   L +      D G YT  V+N +G+ + T  + VL+     P 
Sbjct: 56  FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 115

Query: 314 EGPLKPSNIT 323
                P+N T
Sbjct: 116 LQAGLPANQT 125

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 55.7 bits (134), Expect = 8e-09
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 12/116 (10%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND------------ITIISKDRF 263
           P +     ++     GS+ EF   V  +  P  +WL +               +     +
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173

Query: 264 KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKP 319
              + +   +L++ +    D G Y     N  G  +    ++V    +  E  ++ 
Sbjct: 174 ISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEA 229

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSK 280
           ++    V  GS+  F + V+G+P P  EW  N + I   DR      +D   +L + D  
Sbjct: 11  RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVT 70

Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTV 306
             DS    +   N  G     A + V
Sbjct: 71  GEDSASIMVKAINIAGETSSHAFLLV 96

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 62.1 bits (151), Expect = 5e-12
 Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 14/124 (11%)

Query: 198 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 257
           G       P I +              +  V     F       G P+PT  W  + + +
Sbjct: 1   GSSGSSGPPVIRQ-----------GPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLV 49

Query: 258 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPL 317
            ++D      ++    L++  +K GD+G YT       G    +A + V +   P + P 
Sbjct: 50  STQDSRIKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPP- 106

Query: 318 KPSN 321
           +P++
Sbjct: 107 RPTD 110

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 67.4 bits (164), Expect = 6e-12
 Identities = 27/190 (14%), Positives = 53/190 (27%), Gaps = 21/190 (11%)

Query: 213 KVSPYINR-DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
               +IN  +   D ++     F F +     P     W  +  +   + +      D  
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNG 377

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSC---- 327
             +  F + +   G Y    +N          + +      P+   + S    +SC    
Sbjct: 378 YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR---RKPQVLAEASASQ-ASCFSDG 433

Query: 328 ----NLEWRAPRDDGGTDILHYVVEKMDMETGRWVP-MGDVSGTYTRAENLIEGHDYNFR 382
               +  W+   D              + +  R V      S T   +E       +  +
Sbjct: 434 YPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSE---AIKGFLVK 490

Query: 383 VKAVNKIGES 392
             A N +G S
Sbjct: 491 CCAYNSLGTS 500

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 61.3 bits (148), Expect = 4e-10
 Identities = 9/95 (9%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           + + ++V   ++    + V      +  W+    ++  +  F + N    + + +     
Sbjct: 54  EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTE 112

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
             +G Y L +++          V++ +        
Sbjct: 113 TQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 39/326 (11%), Positives = 77/326 (23%), Gaps = 82/326 (25%)

Query: 222 QLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDD------KSTKL 274
            L  + ++ G         +         W   +  +   + F++          +    
Sbjct: 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFA 292

Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNI------------ 322
            V    R D+G YT +          +A VT+++            +             
Sbjct: 293 FVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINATN-SSEDYEIDQYEEFCFSV 348

Query: 323 ------------TKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT-R 369
                       T S  +        D G  I  +   K               G Y   
Sbjct: 349 RFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQ------------PGEYIFH 396

Query: 370 AENLIEGHDYNFRVK-----AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK- 423
           AEN        F +       V     +    C S        G P     P+ T W K 
Sbjct: 397 AENDDAQFTKMFTLNIRRKPQVLAEASASQASCFS-------DGYP----LPSWT-WKKC 444

Query: 424 -DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFR 482
            D          +   +  +   +  +               ++++++   +  + +  +
Sbjct: 445 SDKSPNCTEEITEGVWNRKANRKVFGQ--------------WVSSSTLNMSEAIKGFLVK 490

Query: 483 VIAVNKGGPGEPSKASAPVTCKPRFV 508
             A N  G                F+
Sbjct: 491 CCAYNSLGTSC-ETILLNSPGPFPFI 515

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 61.2 bits (149), Expect = 7e-12
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 6/99 (6%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
            L   +   G+       +    +   EW     T+    R+ +  D    +L++ D   
Sbjct: 14  DLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSV 71

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPS 320
            D+G Y+       G ++ +A +TV  +P+       PS
Sbjct: 72  ADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPS 106

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 61.6 bits (150), Expect = 8e-12
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 9/100 (9%)

Query: 410 PDRPGQPTVTDWGKDH--VDLEWTPPKKDGGSPISQYIIEKKPKYGPWE---KACIVPAN 464
              P   TV         V + W PP +  G  I+ YI+                 +  +
Sbjct: 9   TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIMETISGD 67

Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
                + DL     Y FR+ A N  G G     S P+  +
Sbjct: 68  RLTHQIMDLNLDTMYYFRIQARNSKGVGPL---SDPILFR 104

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 310 PSPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVE---KMDMETGRWVPMGDVSG 365
            S P+   +        +  + W+ P +  G  I  Y++      ++    W+    +SG
Sbjct: 9   TSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIME-TISG 66

Query: 366 TYTRA--ENLIEGHDYNFRVKAVNKIGES 392
                   +L     Y FR++A N  G  
Sbjct: 67  DRLTHQIMDLNLDTMYYFRIQARNSKGVG 95

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 81  TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 117
             GD    +++DL     Y FR+ A N  G G  SDP
Sbjct: 64  ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP 100

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 203
             GD    +++DL     Y FR+ A N  G G  SDP
Sbjct: 64  ISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP 100

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 60.8 bits (148), Expect = 9e-12
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
           +V+P  +   L D  V  G +F    +V G P+P   WL N    I   R          
Sbjct: 9   EVAPSFSS-VLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQ-PIQYARSTCEAGVAE- 65

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
            L + D+   D G YT   +N+ G    +A VTV
Sbjct: 66  -LHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine receptor,interleukin-4, cytokine/receptor complex; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B* 3bpn_B* 3bpo_B* Length = 207

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 19/192 (9%)

Query: 321 NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT-----RAENLIE 375
            ++ S+C  EW+       +  L  + + + + +     + + +G          ++++ 
Sbjct: 13  YMSISTC--EWKMNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVS 70

Query: 376 GHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKK 435
             +Y   + A  ++           +       +P  PG  TV     D + L W+ P  
Sbjct: 71  ADNYTLDLWAGQQLLWKGSFKPSEHV-------KPRAPGNLTVHTNVSDTLLLTWSNPYP 123

Query: 436 DGGSPIS--QYIIEKKPKYGPWE-KACIVPANITATSVP--DLKEGEEYEFRVIAVNKGG 490
                 +   Y +    +  P + +   V     +  +    LK G  Y  RV A  +  
Sbjct: 124 PDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAY 183

Query: 491 PGEPSKASAPVT 502
               S+ S    
Sbjct: 184 NTTWSEWSPSTK 195

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 64.9 bits (157), Expect = 1e-11
 Identities = 37/314 (11%), Positives = 68/314 (21%), Gaps = 66/314 (21%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
             PP   L  S     +    W  P        L Y     D    +           + 
Sbjct: 3   TQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGD----KQDKKIAPETRRSI 58

Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLE 429
              L E        +      E  P +      +           +         ++   
Sbjct: 59  EVPLNERICLQVGSQCSTNESEK-PSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCS 117

Query: 430 WTPPKKDGGSPISQYIIEKKPKYGPWEKAC---IVPANITATSVP----DLKEGEEYEFR 482
           W P +    SP + Y +    +       C            S           E++  +
Sbjct: 118 WLPGR--NTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQ 175

Query: 483 VIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNE 542
           ++  +  G  +PS    P+T                                        
Sbjct: 176 IMVKDNAGKIKPSFNIVPLTS--------------------------------------- 196

Query: 543 GLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGR 602
                VK       P  P     +    D + ++W+ P +     +  YEVE     +  
Sbjct: 197 ----RVK-------PDPPHIKNLS-FHNDDLYVQWENPQNFISRCLF-YEVEVNNSQTET 243

Query: 603 WIKITPDPIRTKTS 616
                    + +  
Sbjct: 244 HNVFYVQEAKCENP 257

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C* Length = 314

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 28/275 (10%), Positives = 66/275 (24%), Gaps = 42/275 (15%)

Query: 260 KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG--PL 317
            D+       ++ +                    +            +   SPPEG    
Sbjct: 43  GDKQDKKIAPETRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCI---SPPEGDPES 99

Query: 318 KPSNIT-----KSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAEN 372
             + +       S     W   R+   +   +Y +        +     ++         
Sbjct: 100 AVTELQCIWHNLSYMKCSWLPGRN--TSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGC 157

Query: 373 LIEGHD--------YNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
             +           ++ ++   +  G+  P      I       +PD P    ++ +  D
Sbjct: 158 SFDLTKVKDSSFEQHSVQIMVKDNAGKIKP---SFNIVPLTSRVKPDPPHIKNLS-FHND 213

Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPA-------------NITATSVP 471
            + ++W  P+      +  Y +E             V               N +   VP
Sbjct: 214 DLYVQWENPQNFISRCL-FYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVP 272

Query: 472 DLKEGEEYEFRVIA----VNKGGPGEPSKASAPVT 502
            +        R+      +        S  S  ++
Sbjct: 273 GVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMS 307

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 6/95 (6%)

Query: 413 PGQPTVTDWGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P     +    D + + W      K    +    Y +  K       K     A   +  
Sbjct: 12  PVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYL 71

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
           V  LK    YEF V+             S      
Sbjct: 72  VTGLKPNTLYEFSVMVTKGRRSSTW---SMTAHGT 103

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 50.2 bits (120), Expect = 7e-08
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 4/89 (4%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAP---RDDGGTDILHYVVE-KMDMETGRWVPMGDV 363
             P  P   ++ S ++  +  + W      +    TD  +Y V  K ++         + 
Sbjct: 6   SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANA 65

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGES 392
           +        L     Y F V        S
Sbjct: 66  TTLSYLVTGLKPNTLYEFSVMVTKGRRSS 94

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDS 279
           QL D     G   E +  V  E     +W  N   I    K R++I  + K   L +  +
Sbjct: 13  QLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGA 71

Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
            + D+  Y++         + +AK++V     P  G
Sbjct: 72  TKADAAEYSVMT----TGGQSSAKLSVDLKSGPSSG 103

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 61.8 bits (150), Expect = 4e-11
 Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 5/109 (4%)

Query: 210 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD---RFKIV 266
           +  +  P I         V             G P P   W  + + + + +   R K +
Sbjct: 103 QIPRGFPTI-DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQL 161

Query: 267 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPE 314
             +    L++  S+  D G Y     NS GT     A + V        
Sbjct: 162 RSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHHH 210

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 58.7 bits (142), Expect = 6e-10
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 7/117 (5%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS- 271
           +  P   R    D    +G    F     G+P P   W      + ++    I  DD S 
Sbjct: 4   ETPPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62

Query: 272 TKLKVFDSKRG-DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP----LKPSNIT 323
           + L++   +   D  IY     N+ G    + ++TVL     P G     + P    
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKV 119

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 59.6 bits (144), Expect = 5e-11
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 236 FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK-------LKVFDSKRGDSGIYT 288
              +V G+P P+  WL N   +           + +         L++      ++G YT
Sbjct: 20  IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79

Query: 289 LAVKNSWGTDKGTAKVTVLDIP--SPPEGPLKPSNITKSSC 327
           L   N +G    +     +D P    PE P+  +N T    
Sbjct: 80  LLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTSGDP 120

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 59.2 bits (143), Expect = 5e-11
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-----WEKACIVP 462
           G   R  Q +VTD     + L W  P     S + ++ +       P      ++  +VP
Sbjct: 7   GSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVP 66

Query: 463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
               +  + DL+ G  Y   +  +      +  + +A
Sbjct: 67  GTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 103

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 15/109 (13%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD----- 362
               P    L  +++T SS  L W AP          +++           P        
Sbjct: 6   SGSRPRLSQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQR 61

Query: 363 ---VSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
              V GT   A   +L  G  Y+  +  +    ++  +   +  T   P
Sbjct: 62  ELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA-RTLSGP 109

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 63.3 bits (153), Expect = 7e-11
 Identities = 36/337 (10%), Positives = 83/337 (24%), Gaps = 64/337 (18%)

Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPR--DDGGT 340
              +YT  +  ++G    +         +PP+              L+W+ P   D    
Sbjct: 8   VGCLYTFLISTTFGCTSSSDTEIK---VNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKE 64

Query: 341 DILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVN--KIGESLPLVCQ 398
             + Y ++  ++ +  W  +   +  Y    +L +G +             G  +     
Sbjct: 65  CTVEYELKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWA 124

Query: 399 SPITAKDPFG-RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK 457
                  P G             +   ++   W P         +  +           +
Sbjct: 125 ETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGI-GVLLDTNYNLFYWYEGLDHALQ 183

Query: 458 --ACIVPANITAT---SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVI 512
               I              +  + +++   V   ++  P   S  +  +    + + PV 
Sbjct: 184 CVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVY 243

Query: 513 DQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDH 572
                           +T   ++                                     
Sbjct: 244 ----------------LTFTRES----------------------------------SCE 253

Query: 573 IKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPD 609
           IK+KW  P+    +    YE+E RE  +        +
Sbjct: 254 IKLKWSIPLGPIPARCFDYEIEIREDDTTLVTATVEN 290

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D* Length = 380

 Score = 60.6 bits (146), Expect = 5e-10
 Identities = 27/261 (10%), Positives = 55/261 (21%), Gaps = 22/261 (8%)

Query: 258 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA---KVTVLDIPSPPE 314
           I  + +K +          FD  +G        +                T   I     
Sbjct: 76  IGSETWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGI 135

Query: 315 GPLKPSNIT-----KSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
                 ++             W+           +       ++          +     
Sbjct: 136 PETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNI 195

Query: 370 A-----ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
                     +  D+   V   ++     P+             +P  P   T T     
Sbjct: 196 GCRFPYLEASDYKDFYICVNGSSENK---PIRSSYFTFQLQNIVKPLPPVYLTFTRESSC 252

Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI 484
            + L+W+ P     +    Y IE +                   ++    E  +  F V 
Sbjct: 253 EIKLKWSIPLGPIPARCFDYEIEIREDDTTLVT---ATVENETYTLKTTNETRQLCFVVR 309

Query: 485 AVNK---GGPGEPSKASAPVT 502
           +         G  S+ S    
Sbjct: 310 SKVNIYCSDDGIWSEWSDKQC 330

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 63.5 bits (153), Expect = 7e-11
 Identities = 27/188 (14%), Positives = 52/188 (27%), Gaps = 8/188 (4%)

Query: 321 NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYN 380
                SC+ E R       +  L Y            +   +      R         ++
Sbjct: 230 GAAVLSCSWEVRKEVASSVSFGLFYKPS--PDAGSAVLLREEECSPVLREGLGSLHTRHH 287

Query: 381 FRVKAVNKIGESLPLVCQSPITAKDPFGRPD--RPGQPTVT-DWGKDHVDLEWTPPKKDG 437
            ++   +       +V   P  A+         +   P++      D   L W   K   
Sbjct: 288 CQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRY 347

Query: 438 GSPISQYIIEKKPKYGPWEKACIVPA-NITATSVPDLKEGEEYEFRVIA--VNKGGPGEP 494
                 + I+ +     W+ +      N  + ++P L+    Y  RV       G  G  
Sbjct: 348 EHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIW 407

Query: 495 SKASAPVT 502
           S+ S   +
Sbjct: 408 SEWSEARS 415

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 61.9 bits (149), Expect = 2e-10
 Identities = 38/322 (11%), Positives = 79/322 (24%), Gaps = 61/322 (18%)

Query: 310 PSPPEGPLKPSNIT----KSSCNLEWRAPRDDGGT-----DILHYVVE-KMDMETGRWVP 359
            +    P +P ++     +    L W        +       L + V  K   ++     
Sbjct: 103 LTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAA 162

Query: 360 MGDVSGTYTR--AENLIEGHDYNFRVKAVNKIGES---LPLVCQSPITAKDPFGRPDRPG 414
           +   + +      E+L+    Y  RV+     G      P      +      G   +P 
Sbjct: 163 ILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQ 222

Query: 415 QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLK 474
                  G   +   W   K+   S       +  P  G          +          
Sbjct: 223 NLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSL 282

Query: 475 EGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFK 534
               +  ++   +    G+       V+ +PR     I                      
Sbjct: 283 -HTRHHCQIPVPDPATHGQYI-----VSVQPRRAEKHIKSS------------------- 317

Query: 535 NFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVE 594
                               N+   P   + T  D D   ++W+            +E++
Sbjct: 318 -------------------VNIQMAPPSLQVT-KDGDSYSLRWETMKMRYEHIDHTFEIQ 357

Query: 595 RRERTSGRWIKITPDPIRTKTS 616
            R+ T+  W     + ++   S
Sbjct: 358 YRKDTAT-WKDSKTETLQNAHS 378

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 54.2 bits (129), Expect = 7e-08
 Identities = 28/196 (14%), Positives = 51/196 (26%), Gaps = 15/196 (7%)

Query: 321 NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT------YTRAENLI 374
             +  +C               L   V +  +E        D+  +            +I
Sbjct: 15  YTSHITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVI 74

Query: 375 EGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK 434
               +              PL  +  +T      +P  P    ++   +DH  L W+   
Sbjct: 75  PCQSFVVTDVDYFSFQPDRPLGTRLTVT-LTQHVQPPEPRDLQIST-DQDHFLLTWSVAL 132

Query: 435 KDGGSP-----ISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVN 487
               S        ++ +  K     WE A I+ +N +  +     L     Y  RV    
Sbjct: 133 GSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRL 192

Query: 488 KGGPGEPSKASAPVTC 503
             G     + S     
Sbjct: 193 APGSRLSGRPSKWSPE 208

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 51.5 bits (122), Expect = 5e-07
 Identities = 23/228 (10%), Positives = 47/228 (20%), Gaps = 22/228 (9%)

Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNF 234
               L+  + Y  RV      G      P+           P       +      G+  
Sbjct: 174 GPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAV 233

Query: 235 EFDINVI-----GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL 289
              ++                L    +  +     +  ++ S  L+             +
Sbjct: 234 ---LSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQI 290

Query: 290 AVKNSWGTDKGTAKVTVL----------DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGG 339
            V +     +    V             +I   P  P         S +L W   +    
Sbjct: 291 PVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAP--PSLQVTKDGDSYSLRWETMKMRYE 348

Query: 340 TDILHYVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKA 385
                + ++             +            L     Y  RV+ 
Sbjct: 349 HIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRV 396

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 60.6 bits (147), Expect = 7e-11
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 214 VSPYINRDQ-LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
           V P I+  Q   +     G    F     G P P   W  N   I   +++ +   +   
Sbjct: 95  VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE- 153

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
            L V +    D G Y     N  G D+  A + V 
Sbjct: 154 -LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 57.5 bits (139), Expect = 9e-10
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVF 277
           R+ +S  + + G + E    V   P P   WL ++  +T IS +RF ++ ++    L++ 
Sbjct: 6   REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQIL 62

Query: 278 DSKRGDSGIYT-LAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
           +  + D GIY       + G       + ++++P     P K  N T
Sbjct: 63  NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT 109

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 62.5 bits (152), Expect = 7e-11
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 3/102 (2%)

Query: 214 VSPYINRDQ-LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
           V P I+  Q   +     G    F     G P P   W  N   I   +++ +   +  T
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN--T 248

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
           +L V +    D G Y     N  G D+  A + V        
Sbjct: 249 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHH 290

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 62.1 bits (151), Expect = 9e-11
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
             +    LS +++  G +  F    IGEP     +      IIS  R  +  +   ++L 
Sbjct: 5   LQV-TISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63

Query: 276 VFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGPLKPSNIT 323
           ++++   D+GIY     ++ G  +  T  + +             S   
Sbjct: 64  IYNANIEDAGIYRCQATDAKGQTQEATVVLEIY---QKLTFREVVSPQE 109

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDK 270
                  R+ +S  + + G + E    V   P P   WL ++  +T IS +RF ++ ++ 
Sbjct: 96  YQKLTF-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN- 153

Query: 271 STKLKVFDSKRGDSGIYT-LAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
              L++ +  + D GIY       + G       + ++++P     P K  N T
Sbjct: 154 --NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT 205

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 62.7 bits (152), Expect = 8e-11
 Identities = 30/149 (20%), Positives = 45/149 (30%), Gaps = 7/149 (4%)

Query: 182 GNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP----YINRDQLSDIKVRAGSNFEFD 237
                F V   +    G+  D                     R     + V A +   F 
Sbjct: 85  RVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFR 144

Query: 238 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK-LKVFDSKRGDSGIYTLAVKNSWG 296
               G P P+  WL N      + R   +        L +      D G YT  V+N +G
Sbjct: 145 CPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG 204

Query: 297 TDKGTAKVTVLDIPS--PPEGPLKPSNIT 323
           + + T  + VL+     P      P+N T
Sbjct: 205 SIRQTYTLDVLERSPHRPILQAGLPANQT 233

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 15/113 (13%)

Query: 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL-------------CNDITIISKD 261
            P +     ++     GS+ EF   V  +  P  +WL                   + K 
Sbjct: 221 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKT 280

Query: 262 RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
                 D +   L + +    D+G YT    NS G    +A + VL  P+  E
Sbjct: 281 AGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL--PAEEE 331

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 9/129 (6%)

Query: 208 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIV 266
           + RA +V P     Q   +   +G   E       G P+    W+ +   ++  +R  + 
Sbjct: 1   MGRAAEV-PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG 59

Query: 267 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSS 326
                 +L+V ++   DSG Y+   + +          +V    +P  G  +        
Sbjct: 60  P----QRLQVLNASHEDSGAYSCRQRLTQRV---LCHFSVRVTDAPSSGDDEDGEDEAED 112

Query: 327 CNLEWRAPR 335
             ++  AP 
Sbjct: 113 TGVDTGAPY 121

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 57.7 bits (140), Expect = 9e-11
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
            L  ++V  G    F+I +  EP    +W      + +    +I+ D K   L + + + 
Sbjct: 11  PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQL 69

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
           G +G  +    N     K  A + V ++
Sbjct: 70  GMTGEVSFQAAN----TKSAANLKVKEL 93

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
              +V  G    F + +  +P    +W  N   I    ++   +      L + + +  D
Sbjct: 16  PAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTD 74

Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIPS 311
              Y +      G +K + ++ V   PS
Sbjct: 75  DSEYYVTA----GDEKCSTELFVRSGPS 98

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           ++    V  G   +    +  +   +  WL + + +   +R +I  +    +++V DS  
Sbjct: 9   EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGE----EVEVQDSVP 63

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
            DSG+Y     +  G+D     V V D  + P GP
Sbjct: 64  ADSGLYACVTSSPSGSDTTYFSVNVSD--ALPSGP 96

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 9/126 (7%)

Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
           A N  G    S        R + V+P  +       ++  G N       +G P+P  +W
Sbjct: 183 ATNSAGVRYSSPANL--YVRVQNVAPRFSI-LPMSHEIMPGGNVNITCVAVGSPMPYVKW 239

Query: 251 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
           +     +  +D   +       +  +  +   DS  YT    +S G  +  A++TV  +P
Sbjct: 240 MQGAEDLTPEDDMPV------GRNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLP 293

Query: 311 SPPEGP 316
                 
Sbjct: 294 KAGTKH 299

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 60.2 bits (146), Expect = 4e-10
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 7/117 (5%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
           +  P   + +  D    +G    F     G+P P   W      + S+    I  D+ + 
Sbjct: 4   EEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62

Query: 273 K-LKVFDSKRG-DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP----LKPSNIT 323
             L++   +   D  +Y    +NS G     AK+TVL     P G     + P    
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV 119

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 2/115 (1%)

Query: 210 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 269
           +     P I         V             G P P   W  + + +        +   
Sbjct: 103 QLPSGFPNI-DMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL 161

Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKGTAKVTVLDIPSPPEGPLKPSNIT 323
           +S  L++  S+  D G Y     NS G      A + V      P   + P +  
Sbjct: 162 RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHE 216

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
            V P+   +  S++      + EF+  V G+P+PT  W+ N   +I  D F+IV      
Sbjct: 310 LVPPWF-LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS--- 365

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
            L++    + D G Y    +N  G  + +A++ V  
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 27/115 (23%), Positives = 42/115 (36%), Gaps = 11/115 (9%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII---SKDRFKIVNDDKST 272
                 Q   I    G        VIG+P+PT  W  N   +       R  ++      
Sbjct: 122 LRFLS-QTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGA-- 178

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPS---PPEGPLKPSNIT 323
            L++   + GDSG+Y  + +N   T     A+V +L  P          +PSN+ 
Sbjct: 179 -LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVI 232

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 5/116 (4%)

Query: 208 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN 267
           ++            + S++    G +   +  V G P P+  WL  +  I  + +   + 
Sbjct: 213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL 272

Query: 268 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
              +  L + +    DSG YT  V         +A++TVL    PP     PSN+ 
Sbjct: 273 GGSN--LLISNVTDDDSGTYTCVVTYKNENISASAELTVL---VPPWFLNHPSNLY 323

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 62.0 bits (150), Expect = 2e-10
 Identities = 9/95 (9%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           + + ++V   ++    + V      +  W+    ++  +  F + N    + + +     
Sbjct: 54  EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS-MVILKMTE 112

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
             +G Y L +++          V++ +        
Sbjct: 113 TQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRR 147

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 60.5 bits (146), Expect = 7e-10
 Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 5/99 (5%)

Query: 213 KVSPYINR-DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
               +IN  +   D ++     F F +     P     W  +  +   + +   +++  S
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG--LDNGYS 379

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
             +  F + +   G Y    +N          + +    
Sbjct: 380 --ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 5/98 (5%)

Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
              +             +   P     W  +   ++      +  +D   +L +   +  
Sbjct: 20  KVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLE 78

Query: 283 DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPS 320
           DSG Y   +      +  +  VTV + P         S
Sbjct: 79  DSGEYLCEI----DDESASFTVTVTEPPVRIIYSGPSS 112

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 98

 Score = 56.4 bits (135), Expect = 4e-10
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 9/101 (8%)

Query: 406 PFGRPDRPGQPTVTDWGK--DHVDLEWTPPKKDGGSPISQYIIEKKPK--YGPWEKACIV 461
           P G    P +  +T+     +   ++W  P+    S IS+YI+  +PK   G W++A  +
Sbjct: 2   PLGSS-GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEA-TI 56

Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           P ++ + ++  LK G  YE ++I++ + G  E ++     T
Sbjct: 57  PGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 13/111 (11%)

Query: 198 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI 257
           G       P I               ++  +             G+P+P   WL    T 
Sbjct: 1   GSSGSSGPPII-----------LQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTF 49

Query: 258 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
             +D    + +  +  L++ + +  D+G YT    +S G    +A + V +
Sbjct: 50  PGRDPRATIQEQGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTE 98

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
              P   +  ++DI V    +  ++    G P PT  WL N   ++++DR +I       
Sbjct: 293 YAQPNWVQ-IINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG---- 347

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
            L +      D+G+Y    +N  G    +A+++V+
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 10/143 (6%)

Query: 187 FRVLAVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRAGSNFEFDINVIG 242
           +  +  N     +   P  P I R   V     P I       +    G+  + +   +G
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 231

Query: 243 EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA 302
            P+PT  W   D   I++   +    +    L++ + ++ D+G Y    +NS G +    
Sbjct: 232 NPVPTILWRRADGKPIARKA-RRHKSNGI--LEIPNFQQEDAGSYECVAENSRGKNVAKG 288

Query: 303 KVTVLDIPSPPEGPLKPSNITKS 325
           ++T     + P      ++I  +
Sbjct: 289 QLTFY---AQPNWVQIINDIHVA 308

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 4/118 (3%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
                     S + VR G                +  W+ N+      +R  +  +  + 
Sbjct: 100 YLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN- 158

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI-PSPPEGPLKPSNITKSSCNL 329
            L +   ++ D G YT  V N+    K     T L +      G  +P    +    +
Sbjct: 159 -LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 55.9 bits (135), Expect = 5e-10
 Identities = 11/84 (13%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG 282
             +++  AG++      V  +      W  +   + S  + ++     + +L V  + + 
Sbjct: 18  HREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQA 76

Query: 283 DSGIYTLAVKNSWGTDKGTAKVTV 306
           ++G Y+       G  + + ++ V
Sbjct: 77  EAGEYSCEA----GGQQLSFRLQV 96

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
              P    D ++D +   GS+  +     G+P P   WL +   + S++R ++   +   
Sbjct: 292 HAQPDW-LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE--- 347

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
            L+       DSG+Y    +N  GT   +A++TV 
Sbjct: 348 -LRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 9/114 (7%)

Query: 212 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
           ++ +P I     +D     G     +    G P+P  +W   D +  SK     ++ +  
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK----WLSSEPL 258

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKS 325
             L + +    D G Y    +N  G D    ++ +    + P+     ++    
Sbjct: 259 --LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH---AQPDWLDVITDTEAD 307

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 3/119 (2%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
                + ++   +K+  G    F  +     P  +  WL N+         +      + 
Sbjct: 99  FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 158

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTA--KVTVLDIPSPPEGPLKPSNITKSSCNL 329
            L +  ++  D G Y+    +       +   K + L + +       PS   K   + 
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADT 217

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
           P I         +  G         IG P P   W+ N   +   +    + D     L+
Sbjct: 111 PVI-TQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQ 166

Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSN 321
           + +S+  D G Y    +NS GT+   A  T L +     G     +
Sbjct: 167 IENSREEDQGKYECVAENSMGTEHSKA--TNLYVKVRRVGTKHHHH 210

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTK-LKVFDS 279
           +  +  VR G    F     G+P P+  W  N   +  ++ R+ ++        L++   
Sbjct: 12  KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 71

Query: 280 KRG-DSGIYTLAVKNSWGTDKG-TAKVTVLDIPSPPEGP----LKPSNIT 323
           + G D   Y    +N  G      A +T+ +    P G       P    
Sbjct: 72  RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           +   ++V AGS   F+       +  + W      I + +++ +  +     L V +   
Sbjct: 14  KPRSVEVAAGSPAVFEAETERAGVKVR-WQRGGSDISASNKYGLATEGTRHTLTVREVGP 72

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTV 306
            D G Y +      G+ K    + V
Sbjct: 73  ADQGSYAVIA----GSSKVKFDLKV 93

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 11/125 (8%)

Query: 383 VKAVNKIGESLPLVCQSPITAKDPFGRPDR-PGQPTVTDWGKDHVDLEWTPPKKDG--GS 439
             + N+ G  +       IT       P   P   ++       + + W PP      G 
Sbjct: 4   GSSGNRYGPGVS---TDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNG- 59

Query: 440 PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
            I+ Y I  +       +   +  N        L++G +Y F+V A+   G G P   S 
Sbjct: 60  FITGYKIRHRKT-TRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPP---SN 115

Query: 500 PVTCK 504
             T +
Sbjct: 116 WYTAE 120

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 18/143 (12%)

Query: 178 DLIEGNQYEFRVLAVNKGG-------------PGEPSDPTAPHIARAKKVSPYINRDQLS 224
            L + ++  +     +                     +         +K  P+    +  
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF--VEYL 229

Query: 225 DIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
             +V    N      V      T   W  ++  I   ++      D    L + +  + D
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKD 287

Query: 284 SGIYTLAVKNSWGTDKGTAKVTV 306
           +GIY + +K+  G DK   K+  
Sbjct: 288 AGIYEVILKDDRGKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 3/117 (2%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
               ++ + ++      +  F+ +    P     W  + ++     R ++ +    TK+ 
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKV--TVLDIPSPPEGPLKPSNITKSSCNLE 330
             D    D GIY+  V ++ G           +  + +       P+   KS   +E
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVE 118

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 12/139 (8%), Positives = 38/139 (27%), Gaps = 8/139 (5%)

Query: 186 EFRVLAVNKGGPGE-----PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV 240
            +     +  G          +         +   P +       +++       F +  
Sbjct: 72  IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQA 131

Query: 241 -IGEPIPTKEWLCNDITIISKDRFKI--VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT 297
                     ++ N+  I    ++K+    +    ++ +   +  D G YT  +++   T
Sbjct: 132 EKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT 191

Query: 298 DKGTAKVTVLDIPSPPEGP 316
           +  T  +         +  
Sbjct: 192 NHSTVVLVGDVFKKLQKEA 210

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 203 PTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR 262
           PT P         P+    ++  + V  G   +    +    + +  WL + + ++  +R
Sbjct: 1   PTLPEQ-----AQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNR 54

Query: 263 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
            +I  +    +++V DS   DSG+Y     +  G+D     V V
Sbjct: 55  TRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
           K+ P I R    ++K+  G         +G P P+  W+  D  +    R  ++      
Sbjct: 98  KMKPKITR-PPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES---G 153

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTV 306
            L++ + ++ D+G Y    KNS GT      K+ V
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 26/117 (22%), Positives = 36/117 (30%), Gaps = 8/117 (6%)

Query: 209 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKIVN 267
           A     +P I    L  +         F   V   P P   W  N I I   D R+ I  
Sbjct: 1   AEKLPKAPVI-TTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE 59

Query: 268 DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPSPPEGPLKPSNIT 323
           +     L +   +  D GIY     N  G   +    + V      P+    P N+ 
Sbjct: 60  NG--QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK---MKPKITRPPINVK 111

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 55.7 bits (134), Expect = 5e-09
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
              V+ V         +         +K  P+         +V    N      V     
Sbjct: 88  HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL--SWEVTGECNVLLKCKVANIKK 145

Query: 246 PTK-EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304
            T   W  ++  I   ++    +   +  L + +  + D+GIY + +K+  G DK   K+
Sbjct: 146 ETHIVWYKDEREISVDEKHDFKDGICT--LLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203

Query: 305 TV 306
             
Sbjct: 204 VD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 11/98 (11%), Positives = 32/98 (32%), Gaps = 3/98 (3%)

Query: 222 QLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFD 278
               +++       F +            ++ N+  I    ++K+  D  +   ++ +  
Sbjct: 8   SELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEK 67

Query: 279 SKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
            +  D G YT  +++   T+  T  +         +  
Sbjct: 68  LQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEA 105

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVF 277
            L D +V  G   E  + V  E      W+ N + +  +D    R++   D K   L   
Sbjct: 14  PLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFS 72

Query: 278 DSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
           D  + D G Y +         +  A++ V
Sbjct: 73  DVVQEDRGRYQVITNG----GQCEAELIV 97

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 57.1 bits (137), Expect = 6e-09
 Identities = 38/262 (14%), Positives = 74/262 (28%), Gaps = 42/262 (16%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
           SD  +  G +    +       P+ +            R K +   K+  L V   +  D
Sbjct: 104 SDTHLLQGQSLTLTLESPPGSSPSVQCR--------SPRGKNIQGGKT--LSVSQLELQD 153

Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT--------------KSSCNL 329
           SG +T  V  +    +    + VL          K                     S  L
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGEL 213

Query: 330 EWRAPRDDGGTDILHYVVEK------MDMETGRWVPMGDVSGTYTRAENLIEGHDY-NFR 382
            W+A R       + + ++          +  +      +    T  + L +     N  
Sbjct: 214 WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT 273

Query: 383 VKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPIS 442
           +    K G+    V    + A             T   WG     L  +   ++  + +S
Sbjct: 274 LALEAKTGKLHQEVNLVVMRA------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS 327

Query: 443 --QYIIE-KKPKYGPWEKACIV 461
             +  +    P+ G W+  C++
Sbjct: 328 KREKAVWVLNPEAGMWQ--CLL 347

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 57.3 bits (138), Expect = 9e-09
 Identities = 20/110 (18%), Positives = 28/110 (25%), Gaps = 11/110 (10%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 273
             P       S    R G N     +    P     WL +           I N      
Sbjct: 379 YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISN------ 432

Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
                    +SG+YT    NS      T   T+      P+  +  +N  
Sbjct: 433 -----ITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSK 477

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
           P  +    +   V       F      +   T  W  N+ ++    R ++ N +++  L 
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRT--LT 167

Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLDIPSPPEGPLKPSNI 322
           +F+  R D+  Y    +N     +  +  + VL  P  P      ++ 
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSY 215

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 23/134 (17%), Positives = 41/134 (30%), Gaps = 9/134 (6%)

Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
           A N       +  T   +       P       +   V              +      W
Sbjct: 267 AHNSDTGLNRTTVTTITVYAE---PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWW 323

Query: 251 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDI 309
           + N+ ++    R ++ ND+++  L +    R D G Y   ++N    D      + VL  
Sbjct: 324 V-NNQSLPVSPRLQLSNDNRT--LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYG 380

Query: 310 PSPPEGPLKPSNIT 323
           P  P   + PS   
Sbjct: 381 PDDP--TISPSYTY 392

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 9/139 (6%)

Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI 245
            +   A N       +              P  +    +   V       F      +  
Sbjct: 440 LYTCQANNSASGHSRT---TVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNT 496

Query: 246 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKV 304
               W  N  ++    R ++ N +++  L +F+  R D+  Y   ++NS   ++     +
Sbjct: 497 TYL-WWVNGQSLPVSPRLQLSNGNRT--LTLFNVTRNDARAYVCGIQNSVSANRSDPVTL 553

Query: 305 TVLDIPSPPEGPLKPSNIT 323
            VL  P  P   + P + +
Sbjct: 554 DVLYGPDTP--IISPPDSS 570

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 23/133 (17%), Positives = 34/133 (25%), Gaps = 16/133 (12%)

Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
             N       SD    ++                +   R+G N     +    P     W
Sbjct: 183 TQNPVS-ARRSDSVILNVLYGPDAP----TISPLNTSYRSGENLNLSCHAASNPPAQYSW 237

Query: 251 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
             N     S     I N   +           +SG YT    NS      T   T+    
Sbjct: 238 FVNGTFQQSTQELFIPNITVN-----------NSGSYTCQAHNSDTGLNRTTVTTITVYA 286

Query: 311 SPPEGPLKPSNIT 323
            PP+  +  +N  
Sbjct: 287 EPPKPFITSNNSN 299

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 11/94 (11%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
              P        D    +G+N     +    P P   W  N I               + 
Sbjct: 556 LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQ-----------QHTQ 604

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
            L +      ++G Y   V N       +   ++
Sbjct: 605 VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 212 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDK 270
           +K S    +      +V  G      + +  +     +WL N   I +S  ++   +   
Sbjct: 12  EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70

Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
              L +      D   Y   V    G +K + ++ V +
Sbjct: 71  KRTLTISQCSLADDAAYQCVV----GGEKCSTELFVKE 104

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 5/123 (4%)

Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
            +  G     S      + R     P I   + S +    G   +   +     +     
Sbjct: 163 TMVNGR-ESTSTGIWLKVNRVHPEPPQIKL-EPSKLVRIRGEAAQIVCSATNAEVGFNVI 220

Query: 251 LCND---ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
           L      + I     F+     K   L +      D+GIY+    N  GT   T    V+
Sbjct: 221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280

Query: 308 DIP 310
           +  
Sbjct: 281 ESH 283

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 10/186 (5%)

Query: 321 NITKSSCNLEWRAPRDDGGTDI-LHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDY 379
           N+   +C   W++  +   T++ LHY  +  D +  +       S   T    L +   +
Sbjct: 11  NVEYMNC--TWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIH 68

Query: 380 NFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS 439
            ++   V       P    + +        P  P   T+    +  ++L W        +
Sbjct: 69  LYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF---LN 125

Query: 440 PISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRV---IAVNKGGPGEPSK 496
              +++++ +  +                S+P +   + Y FRV        G     S+
Sbjct: 126 HCLEHLVQYRTDWDHSWTE-QSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 184

Query: 497 ASAPVT 502
            S P+ 
Sbjct: 185 WSHPIH 190

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
           K +PY   D+  ++ +  G +        G P PT +W+ N   + S            T
Sbjct: 310 KAAPYW-LDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDT 368

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
            +   D++     +Y     N  G     A V+VLD+
Sbjct: 369 -IIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLDV 404

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
           S   V  G +   +    G P P   W      + S D+ K  N +K+  L++ +    D
Sbjct: 230 SSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS-DKAKFENFNKA--LRITNVSEED 286

Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKS 325
           SG Y     N  G+ + T  V V    + P    +P N+  +
Sbjct: 287 SGEYFCLASNKMGSIRHTISVRVK---AAPYWLDEPKNLILA 325

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 51.0 bits (122), Expect = 6e-07
 Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 8/125 (6%)

Query: 200 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITI 257
           P DP+           P I +    D  V    N   +    G P P+  W  N     I
Sbjct: 4   PMDPSIQ---NELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNI 60

Query: 258 ISKDRFKIVNDDKSTKLKVFDSKRG--DSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPE 314
               R  +     +  +      R     G Y    +N +GT      ++ V   P  P+
Sbjct: 61  AKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPK 120

Query: 315 GPLKP 319
             L P
Sbjct: 121 ENLDP 125

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 5/112 (4%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
            SP   ++ L  + V+ G+      N   G P P   W+ + +  I++D+      +   
Sbjct: 114 KSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD- 172

Query: 273 KLKVFDSKRGDS-GIYTLAVKNSWG-TDKGTAKVTVLDIPSPPEGPLKPSNI 322
            L   +    D    Y+   +  +  T +     T+  + +       PS +
Sbjct: 173 -LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFM 223

>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor); helical bundle, fibronectin type III domain, beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A {Homo sapiens} PDB: 3og4_B* Length = 226

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 32/209 (15%), Positives = 55/209 (26%), Gaps = 28/209 (13%)

Query: 310 PSPPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVE-KMDMETGRWVPMGDVS 364
           P  P     P N+T  S N    L W      G    + Y V  +      RW  + + +
Sbjct: 1   PGRPRLA-PPQNVTLLSQNFSVYLTWLPGL--GNPQDVTYFVAYQSSPTRRRWREVEECA 57

Query: 365 GT------YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDR---PGQ 415
           GT          +     + +  RV+ V+   +S       P    +          P  
Sbjct: 58  GTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKS-------PWVESEYL-DYLFEVEPAP 109

Query: 416 PTVTDWGKD---HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
           P +     +     +  +  P       +   +   K   G      + P          
Sbjct: 110 PVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQPVQITLQ 169

Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPV 501
               E +      +      + SK S P 
Sbjct: 170 PAASEHHCLSARTIYTFSVPKYSKFSKPT 198

>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B* 2erj_B* Length = 214

 Score = 54.4 bits (130), Expect = 2e-08
 Identities = 24/194 (12%), Positives = 47/194 (24%), Gaps = 17/194 (8%)

Query: 321 NITKSSCNLEWRAPRDDGGT--------DILHYVVEKMDMETGRWVPMGDVSGTYTRAEN 372
           +  + SC   W        T        D   +      +   +     ++      ++ 
Sbjct: 14  SRAQISC--VWSQDGALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQK 71

Query: 373 LIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEW-T 431
           L        RV     +   +  +            R   P    V        ++ W  
Sbjct: 72  LTTVDIVTLRVLCREGVRWRVMAIQDFKPFENL---RLMAPISLQVVHVETHRCNISWEI 128

Query: 432 PPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS--VPDLKEGEEYEFRVIAVNKG 489
                      ++          WE+A ++          +  L    +YEF+V      
Sbjct: 129 SQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQ 188

Query: 490 GP-GEPSKASAPVT 502
           G     S  S P+ 
Sbjct: 189 GEFTTWSPWSQPLA 202

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 8/139 (5%)

Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-E 249
              +G     S+     +  A K  P ++    +   +R G  F     +          
Sbjct: 188 VDQEGK-SVLSEKFILKVRPAFKAVPVVSV-SKASYLLREGEEFTVTCTIKDVSSSVYST 245

Query: 250 WLCNDITIISKDRFKIVNDDKSTK-----LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304
           W   +     ++++   +           L +  ++  DSG++     N++G+   T  +
Sbjct: 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTL 305

Query: 305 TVLDIPSPPEGPLKPSNIT 323
            V+D       P+  + + 
Sbjct: 306 EVVDKGFINIFPMINTTVF 324

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 11/110 (10%)

Query: 213 KVSPYINRD--QLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDD 269
               +IN      + + V  G N +  +     P P   +W+  + T   K      +++
Sbjct: 308 VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSEN 367

Query: 270 KST-----KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
           +S      +L +   K  + G YT  V NS         V V    + PE
Sbjct: 368 ESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN---TKPE 414

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 13/103 (12%), Positives = 21/103 (20%), Gaps = 12/103 (11%)

Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS------------TK 273
           +      N        G P PT +W     T        +  D ++             +
Sbjct: 416 LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQ 475

Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
             +  S    +G       N  G                   P
Sbjct: 476 SSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHP 518

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
             +P   +     I V+ G +      V G P P   W  N    +S  R  + +     
Sbjct: 306 VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK-PLSGGRATVTDS---- 360

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
            L +   K GD G Y     N  G       V V
Sbjct: 361 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 30/156 (19%), Positives = 50/156 (32%), Gaps = 10/156 (6%)

Query: 175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVS----PYINRDQLSDIKVRA 230
            V      + Y++   A N     E            K  S      + +    D+  +A
Sbjct: 167 IVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKA 226

Query: 231 GSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT 288
           G            P+    +  N   +    +DR    N     +L    +   D G+YT
Sbjct: 227 GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYT 286

Query: 289 LAVKNSWGTDKG-TAKVTVLDIPSPPEGPLKPSNIT 323
             V N  G  +  + K+TV+   S P+   KP  + 
Sbjct: 287 CEVDNGVGKPQKHSLKLTVV---SAPKYEQKPEKVI 319

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 5/112 (4%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 271
              P + +DQ +++  R  +    +  + G     K  W  +  +   ++    +  D+ 
Sbjct: 4   DKYPVL-KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
           + L     +  D G Y    +   G    +++V           P K    T
Sbjct: 63  S-LVFLRPQASDEGHYQCFAETPAGVA--SSRVISFRKTYLIASPAKTHEKT 111

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 9/97 (9%)

Query: 413 PGQPTVTDWGKDHVDLEWT-PPKKDGGSPISQYIIEKKPK----YGPWEKACIVPANITA 467
           P         +  + L+W   P  +  +PI  + I  +P        ++K  +V  +   
Sbjct: 12  PYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD-MVEGDRYW 70

Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
            S+  L+    Y+ ++   N+GG  E    S  + C+
Sbjct: 71  HSISHLQPETSYDIKMQCFNEGGESEF---SNVMICE 104

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 8/89 (8%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRA-PRDDGGTDILHYVV---EKMDMETGRWVPMGDVSG 365
            + P        + +++  L+W   P  +  T I  + +            +     V G
Sbjct: 9   VAGPYI-TFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDM-VEG 66

Query: 366 TYTRA--ENLIEGHDYNFRVKAVNKIGES 392
                   +L     Y+ +++  N+ GES
Sbjct: 67  DRYWHSISHLQPETSYDIKMQCFNEGGES 95

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 81  TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
            EGD     +  L     Y+ ++   N+GG  E S+  
Sbjct: 64  VEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVM 101

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
            EGD     +  L     Y+ ++   N+GG  E S+  
Sbjct: 64  VEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVM 101

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 8/99 (8%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
                   +       ++L W   +         Y +          +       +    
Sbjct: 10  SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYEL----HV--LNQDEEWHQMVLEPR 63

Query: 470 --VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
             +  L+    Y  RV  +   GPG  S      T  P 
Sbjct: 64  VLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPS 102

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 3/83 (3%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
            S     LK          L W   R       L Y +  ++ +         V      
Sbjct: 9   ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ---MVLEPRVL 65

Query: 370 AENLIEGHDYNFRVKAVNKIGES 392
              L     Y  RV+ +  +G  
Sbjct: 66  LTKLQPDTTYIVRVRTLTPLGPG 88

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 39/206 (18%), Positives = 59/206 (28%), Gaps = 24/206 (11%)

Query: 312 PPEGPLKPSNITKSSCNL--EWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT- 368
           PP  P      + +       WR   D G          +         P     G  + 
Sbjct: 3   PPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSC 62

Query: 369 --RAENLIEGHDYNFRVKAVNKIG--ESLPLVCQSPITAKDPFGRPDRPGQPTVT----D 420
               +       Y   V A N++G   S  L        +     PD P +  V     +
Sbjct: 63  HFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQ-----PDPPLELAVEVKQPE 117

Query: 421 WGKDHVDLEWTPP---KKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSVPDLKEG 476
             K ++ ++W+PP       G     Y I  KP+    WE         T   +  L  G
Sbjct: 118 DRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEI--HFAGQQTEFKILSLHPG 175

Query: 477 EEYEFRVIAVNKGGPGEPSKASAPVT 502
           ++Y  +V      G    S  S    
Sbjct: 176 QKYLVQVRCKPDHGYW--SAWSPATF 199

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 3/112 (2%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
                  ++  +  + + G +     +V+    PT  W      +I K   + +    + 
Sbjct: 98  FQKLMF-KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 156

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV-LDIPSPPEGPLKPSNIT 323
            L++   K+ D G Y    +     +     + V +++P   +      N T
Sbjct: 157 -LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNAT 207

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 214 VSPYI-NRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS--KDRFKIVNDDK 270
           V P +  R  + +     G +     +  G P PT  W  +   I +  +D  K +  D 
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252

Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
           S++L + +  + D   Y    +N  G    +  + V 
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 8/107 (7%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEP-IPTKEWL-CNDITIISKD-RFKIV-NDDKSTKLKVF 277
             S  ++  G +  F   V G+       W   N   +     R  +V NDD S+ L ++
Sbjct: 8   VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67

Query: 278 DSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGPLKPSNIT 323
           ++   D+GIY   V    GT    T  V +            P+   
Sbjct: 68  NANIDDAGIYKCVVTAEDGTQSEATVNVKI---FQKLMFKNAPTPQE 111

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A Length = 236

 Score = 53.3 bits (127), Expect = 5e-08
 Identities = 26/198 (13%), Positives = 48/198 (24%), Gaps = 18/198 (9%)

Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNL--EWRAPRDDGGTDILHYVVEKMDMETGRWV 358
              V      +    P      +         W      G  +     +      T  W 
Sbjct: 18  LQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWT 77

Query: 359 PMGDVSGTYTRA---------ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGR 409
                   Y  A                 Y  ++ +     +         +    P   
Sbjct: 78  QEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIAL 137

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPK---KDGGSPISQYIIEKKPKYGP-WEKACIVPANI 465
                  ++T      + + W  P+      G  + +Y ++ K      W+    +    
Sbjct: 138 NWTLLNVSLTG-IHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILT-- 194

Query: 466 TATSVPDLKEGEEYEFRV 483
           T+  V  LK  +EYE RV
Sbjct: 195 TSVPVYSLKVDKEYEVRV 212

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 50.8 bits (121), Expect = 5e-08
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 12/104 (11%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPI---PTKEWLCN---------DITIISKDRFKIVNDD 269
           +     V+ G +  F   V  E +   PT +W               +  K+ F+  +  
Sbjct: 13  KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 72

Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
            + ++++  +K   +G Y   V      D  +  + V +     
Sbjct: 73  YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 116

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 53.8 bits (129), Expect = 5e-08
 Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 5/123 (4%)

Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
           A+  G     S      + +     P +     +++    G   +   +     +    +
Sbjct: 163 ALMGGR-KVMSISIRLKVQKVIPGPPAL-TLVPAELVRIRGEAAQIVCSASSVDVNFDVF 220

Query: 251 LCND---ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
           L ++   + I  +  F      K   L +       +G Y+    N  G    +    V+
Sbjct: 221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280

Query: 308 DIP 310
           +  
Sbjct: 281 ESA 283

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 52.8 bits (126), Expect = 6e-08
 Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 8/128 (6%)

Query: 378 DYNFRVKAVNKIGESLPLVCQSPITAKDPFG--RPDRPGQPTVTD-WGKDHVDLEWTPPK 434
            Y   ++  + +G        SP T   P    +P  P             + + W  P 
Sbjct: 81  GYTMWIRINHSLGSL-----DSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPV 135

Query: 435 KDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEP 494
               +   Q       K   W+   +  A   + S+P       Y  +V      G G  
Sbjct: 136 FPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYW 195

Query: 495 SKASAPVT 502
           S  S P  
Sbjct: 196 SNWSNPAY 203

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 53.7 bits (128), Expect = 6e-08
 Identities = 33/228 (14%), Positives = 72/228 (31%), Gaps = 29/228 (12%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIPTK---EWLCNDITIISKDRFKIVNDD 269
           ++  ++  Q +     AG  F     V G EP+P+     W  +D             ++
Sbjct: 1   MAFTVSI-QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------EN 49

Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITK---SS 326
            +  L V D+   ++G Y + V+++       ++V +++         +P +      + 
Sbjct: 50  NTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTD 109

Query: 327 CNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVK 384
             L        G T   +Y +         W    DV  T      +      +  + VK
Sbjct: 110 VELHATVKFSGGKTPADNYEL------HYSWSKGEDVIDTTQDITIQEFTADKNGVYTVK 163

Query: 385 AVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTP 432
              +  +S      +           D+    + T    + + L +  
Sbjct: 164 VWGESEDS---AASASTKIMLATMNVDQDVVESKTVALGNEISLNYVV 208

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-----SKDRFKIVN 267
           K +P I            G +       +G P P   W   +  +      S  RF I+N
Sbjct: 90  KAAPDITG-HKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN 148

Query: 268 DDKSTKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
            +  T+L + +     D G Y     NS G+   +  + V
Sbjct: 149 KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 12/113 (10%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDK 270
           +  P I       I   +        N+           W  N + + +  +     +  
Sbjct: 1   QNEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK-----NAS 54

Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
           + + ++   +  DSG Y   V +     K  A + V    + P+      +  
Sbjct: 55  NMEYRINKPRAEDSGEYH-CVYHFVSAPKANATIEVK---AAPDITGHKRSEN 103

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 7/119 (5%)

Query: 191 AVNKGGPGEPSDPTAPHIARAKKVS---PYINRDQLSDIKVRAGSNFEFDINVIGEPIPT 247
             +            P I   ++ +   P     Q  D+    G N   +   +G P+P 
Sbjct: 85  VSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPD 144

Query: 248 KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
             W      + S              LK+F+ +  D GIY    +N  G DK  A++ V
Sbjct: 145 IRWRKVLEPMPSTAEISTSG----AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 10/119 (8%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKS 271
           + P+   ++  +++V+ G       +         +  WL N+  +      +      +
Sbjct: 7   LDPFP-PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTN 65

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI-------PSPPEGPLKPSNIT 323
             L + + +  D G Y+  V +   T    +K   L         P P +  ++  ++ 
Sbjct: 66  GNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           P+ P   L  +  T SS  L W A  D+ G  +  Y V               V+GT   
Sbjct: 4   PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDVYNGT------ALATTVTGTTAT 54

Query: 370 AENLIEGHDYNFRVKAVNKIG 390
              L     Y F VKA +  G
Sbjct: 55  ISGLAADTSYTFTVKAKDAAG 75

>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1 Length = 88

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 11/93 (11%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P  P     T      + L WT    + G  ++ Y +     Y     A  V    T  +
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTASTDNVG--VTGYDV-----YNGTALATTVTG--TTAT 54

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           +  L     Y F V A +    G  S AS  V+
Sbjct: 55  ISGLAADTSYTFTVKAKDAA--GNVSAASNAVS 85

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 222 QLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 280
             SD+ V  G     +     G P PT  W  +   +  KD    +   K   L +  ++
Sbjct: 117 NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK---LMITYTR 173

Query: 281 RGDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGP 316
           + D+G Y     N  G  +   A++TVL+ PS  +  
Sbjct: 174 KSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 9/121 (7%)

Query: 210 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-----KDRFK 264
           R +   P I  +  SD+ V  G     +    G P PT EW      + +     +    
Sbjct: 4   RQEDFPPRI-VEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62

Query: 265 IVNDD--KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNI 322
           ++        ++      R D G+Y    +N  G    +   ++       +    PS++
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV-SHDASLEVAILRDDFRQNPSDV 121

Query: 323 T 323
            
Sbjct: 122 M 122

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 51.7 bits (124), Expect = 9e-08
 Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDK 270
                  ++  +  + + G +     +V+    PT  W      + +    RF ++++  
Sbjct: 98  FQKLMF-KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-- 154

Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
              L++   K+ D G Y    +     +     + V+
Sbjct: 155 -NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 8/107 (7%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITIISKDRFKIV---NDDKSTKLKVF 277
             S  ++  G +  F   V G+       W   +   +S ++ +I    NDD S+ L ++
Sbjct: 8   VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67

Query: 278 DSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPSPPEGPLKPSNIT 323
           ++   D+GIY   V    GT  + T  V +            P+   
Sbjct: 68  NANIDDAGIYKCVVTAEDGTQSEATVNVKIF---QKLMFKNAPTPQE 111

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 18/119 (15%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS------------KDRFKIVNDDKS 271
             I      N  F +     P+    W      +              K+R  +     S
Sbjct: 3   QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGS 61

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLE 330
             L +++    D   Y +   N   T K    + VL++ S P    + SN T  +C + 
Sbjct: 62  --LTIYNLTSSDEDEYEMESPNITDTMKFF--LYVLEMVSKPMIYWECSNAT-LTCEVL 115

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVS 364
           ++  P+ P G     + + ++ NL W A           Y V++     G +  +  +++
Sbjct: 1   MVSAPAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTTIATNIT 55

Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
            T      +  G  Y + V AV+   E+L 
Sbjct: 56  STNYTDTGVATGTKYYYVVSAVSNGVETLN 85

>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A {Clostridium thermocellum} Length = 103

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 413 PGQPT----VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP-KYGPWEKACIVPANITA 467
           P  PT    V D   +  +L W           + Y +++     GP+     +  NIT+
Sbjct: 5   PAFPTGLSAVLDSSGNTANLTWNAA-----PGANSYNVKRSTKSGGPYTT---IATNITS 56

Query: 468 TSVPD--LKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           T+  D  +  G +Y + V AV+ G     S  +    
Sbjct: 57  TNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 426 VDLEWT-PPKKDGGSPISQYIIEKKPKY----GPWEKACIVPANITATSVPDLKEGEEYE 480
           + L+WT  P  +  +PI  + I  +P        +++  +V  +     +  L+    Y+
Sbjct: 21  IMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRD-VVEGSKQWHMIGHLQPETSYD 79

Query: 481 FRVIAVNKGGPGEPSKASAPVTCK 504
            ++   N+GG  E    S  + C+
Sbjct: 80  IKMQCFNEGGESEF---SNVMICE 100

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 7/102 (6%)

Query: 222 QLSDIKVRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKIVNDDK-----STKLK 275
           +  D +V  G     +     G P PT  W+ + + +            +        L 
Sbjct: 114 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173

Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLDIPSPPEGP 316
           + + +  D G Y    +N  GT +   AK+ V    +     
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 6/112 (5%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKS 271
           P I  +  +D+ V+       +  V G+P PT EW  +   + + +    R +  +    
Sbjct: 10  PRI-IEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
               +   K  D G Y    KN  G    +   ++       +  ++P +  
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAV-SRHASLQIAVLRDDFRVEPKDTR 119

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 13/104 (12%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR-------------FKIVND 268
                +   G + E     +G P+P  +W                             + 
Sbjct: 27  APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQ 86

Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSP 312
             ++ + +      D+G Y     N    +  T    V  + + 
Sbjct: 87  HAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 12/113 (10%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCND--ITIISKDRFKI---- 265
              P I+           G   +    +   P P +  W   +  +   +  R+ +    
Sbjct: 12  NGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 69

Query: 266 VNDDKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTVL--DIPSPPEG 315
             +   + L + +  R D   IY     NS+G+D    ++     ++  P  G
Sbjct: 70  TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 122

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW-LCND--ITIISKDRFKIVNDDKST 272
             I   +   + V  G   +F     G+P P   W       ++  S  R  +  D    
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD---G 441

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
            L+V  ++  D+G Y     N+ G D   A + V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHV 475

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 15/131 (11%)

Query: 195 GGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND 254
           G        ++  + R       I         V AG   +      G P    +W   +
Sbjct: 2   GSSHHHHHHSSGLVPRG----SKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMN 56

Query: 255 ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPP 313
             I + +         +++L        D+G Y   V N++  +    +++ V DIP   
Sbjct: 57  KEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESF 107

Query: 314 EGPLKPSNITK 324
           +  +   + +K
Sbjct: 108 QRSVDGVSESK 118

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 10/126 (7%)

Query: 199 EPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII 258
           +  +     +    +    I   + +  K+  GS        +G PIP  +W  N++ + 
Sbjct: 102 DIPESFQRSVDGVSESKLQICV-EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT 160

Query: 259 SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLK 318
            + +             V        G Y   V N   +        ++D  +    P  
Sbjct: 161 HETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDN 211

Query: 319 PSNITK 324
               T 
Sbjct: 212 KEQTTD 217

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 41/302 (13%), Positives = 82/302 (27%), Gaps = 62/302 (20%)

Query: 232 SNFEFDINVIGEPIPTKEWLCNDITI-ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA 290
               + +     P     W  ND    +  +    +       L +  + + DSG Y   
Sbjct: 41  PQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCT 99

Query: 291 VKNSWGTDKGTAKVTVLDIPSP-PEGPLKPSNITKSS-----CNLEWRAPRDD------- 337
            +N+   DK + ++ V +           P  +T S+     C       RD        
Sbjct: 100 TRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQW 159

Query: 338 --GGTDILHYVVEKMDMETGRWVPMGDV----SGTYT-RAENLIEGHDYNFRVKAVNKI- 389
                 +     + + +     + + DV    +G Y        EG  YN       +I 
Sbjct: 160 YKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIK 219

Query: 390 ---------------------GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDL 428
                                G  L + C+         G P      T+  W  +   +
Sbjct: 220 KKKEETIPVIISPLKTISASLGSRLTIPCK----VFLGTGTP----LTTMLWWTANDTHI 271

Query: 429 EWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK 488
           E   P    G  +++   ++  +         +       +  DL    +++   +  N 
Sbjct: 272 ESAYP----GGRVTEGPRQEYSENNENYIEVPL--IFDPVTREDL--HMDFK--CVVHNT 321

Query: 489 GG 490
             
Sbjct: 322 LS 323

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
           SD  +  G +    +       P+ +            R K +   K+  L V   +  D
Sbjct: 105 SDTHLLQGQSLTLTLESPPGSSPSVQCR--------SPRGKNIQGGKT--LSVSQLELQD 154

Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIP 310
           SG +T  V  +    +    + VL   
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIVVLAFQ 181

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 40.0 bits (93), Expect = 8e-04
 Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 22/116 (18%)

Query: 226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN-----------------D 268
           +  + G   E       +      W  ++   I  ++   +                  D
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKP-SNIT 323
             +  L + + K  DS  Y   V++     K   ++ V  + +  +  L    ++T
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLVFGLTANSDTHLLQGQSLT 116

>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex, fibronectin-III, cytokine, glycoprotein, polymorphism, secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R* Length = 211

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 29/208 (13%), Positives = 53/208 (25%), Gaps = 32/208 (15%)

Query: 312 PPEGPLKPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 367
           P +      ++   S N    L W +  +        Y +E        WV         
Sbjct: 1   PEDPSDLLQHVKFQSSNFENILTWDSGPEGTPD--TVYSIEYKTYGERDWVAKKGCQRIT 58

Query: 368 TRAENLIE-----GHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWG 422
            ++ NL          Y  RV AV+  G S   +     + +           P VT   
Sbjct: 59  RKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHT-----TLKPPDVTCIS 113

Query: 423 KD-HVDLEWTPP----KKDGGSPISQYIIEKKPKY-------GPWEKACIVPANITATSV 470
           K   + +   P     +   G  ++   I     Y         ++    +         
Sbjct: 114 KVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQM--HLGGKQREYEF 171

Query: 471 PDLKEGEEYEFRVIAVNKGGP--GEPSK 496
             L    E+   ++ +         P  
Sbjct: 172 FGLTPDTEFLGTIMILVPTWAKESAPYM 199

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 402 TAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYGPWEKACI 460
           T K P   P +P    V +     V L W   K  +  S ++ Y +  +       +  +
Sbjct: 13  TKKTP---PSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQ--V 67

Query: 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
           +  N T+  +  L   E+Y   V A   GG G  S
Sbjct: 68  LNTNKTSAELV-LPIKEDYIIEVKATTDGGDGTSS 101

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYII--EKKPKYGPWEKACIVPANITATSV 470
           P            + ++W  P++  G  I  Y +     P            A+   T++
Sbjct: 22  PRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVADSQITTI 80

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
            +L   + Y  +V+A    G G     S+ +   
Sbjct: 81  GNLVPQKTYSVKVLAFTSIGDGPL---SSDIQVI 111

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 10/105 (9%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVV---EKMDMETGRWVPMGDVS 364
             PS     ++   ++ ++  ++W+ P +  G  I  Y V            W+      
Sbjct: 16  QAPSSAPRDVQARMLSSTTILVQWKEPEEPNG-QIQGYRVYYTMDPTQHVNNWMKHNVAD 74

Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDP 406
              T   NL+    Y+ +V A   IG+   S  +      T    
Sbjct: 75  SQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVI---TQTGS 116

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 49.2 bits (117), Expect = 9e-07
 Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 9/108 (8%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK--------LK 275
            ++++   +  +      G   P  EW  +         +                  + 
Sbjct: 12  PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGIT 71

Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT 323
                R D+G YT  V    G   G  KV  L +  PP  P      +
Sbjct: 72  FKSVTREDTGTYTCMVSEEGGNSYGEVKVK-LIVLVPPSKPTVNIPSS 118

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 46.1 bits (109), Expect = 8e-06
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 9/101 (8%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFD-INVIGEPIPTKEWLCNDITIISKDRFKI------- 265
           V P              G+          G P     W  + I + +  +          
Sbjct: 106 VPPSKPT-VNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164

Query: 266 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
           V +  + +L        D+G Y+   +N +GT   +  V +
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 205

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 426 VDLEWTPPKKDGGSPISQYII-----EKKPKYGPWEKACIVPANITATSVPDLKEGEEYE 480
           V + WT  ++     I  Y +             W+          +  + +LK+G  YE
Sbjct: 32  VQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYE 89

Query: 481 FRVIAVNKGGPGEPSKASAPVTCK 504
            +V        G     S   T +
Sbjct: 90  IKVRPYFNEFQGMD---SESKTVR 110

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 12/99 (12%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTK---EWLCNDIT---------IISKDRFKIVNDD 269
           +  D +V  G +  F   V G  +      +W               +   D +   +  
Sbjct: 10  RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69

Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
              +L + D++   +G Y   V      D     +TV +
Sbjct: 70  YLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 22/214 (10%), Positives = 55/214 (25%), Gaps = 20/214 (9%)

Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 359
           GT+ V +    +  E         + S +  W    D    +   Y +            
Sbjct: 108 GTSIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGTD--APEDTQYFLYYRYGSWTEECQ 165

Query: 360 MGDVSGTYTRAE--------NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD 411
              +                           V   +   +   +     + A     + +
Sbjct: 166 EYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSS---KHSAIRPFDQLFALHAIDQIN 222

Query: 412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVP 471
            P   T        + ++W  P          Y ++       + +   +   +T   + 
Sbjct: 223 PPLNVTAE-IEGTRMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQ---IEKLMTNAFIS 278

Query: 472 DLKEGEEYEFRV---IAVNKGGPGEPSKASAPVT 502
            + +  +Y+ +V   ++      G  S+ S P+ 
Sbjct: 279 IIDDLSKYDVQVRAAVSSMCREAGLWSEWSQPIY 312

>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} Length = 317

 Score = 41.0 bits (95), Expect = 7e-04
 Identities = 41/314 (13%), Positives = 78/314 (24%), Gaps = 79/314 (25%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI-LHYVVEKMDMETGRWVPMGDVSGTYT 368
             PP           +   L+W+   D    ++ L Y V+    +   +           
Sbjct: 12  LLPPVN-FTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYET---RITESK 67

Query: 369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD----------RPGQPTV 418
               L  G  ++  V+ + +   SL     +      P G P              +   
Sbjct: 68  AVTILHMG--FSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNY 125

Query: 419 TDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC---IVPANITATS------ 469
           +      V L  T          +QY +    +YG W + C    +       +      
Sbjct: 126 SRLRSYQVSLHCTWMVGTDAPEDTQYFL--YYRYGSWTEECQEYSMDTLGRNIACWFPRT 183

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFI 529
               K  +     V   +K     P                                   
Sbjct: 184 FILSKGRDWLAVLVNGSSKHSAIRPF---------------------------------- 209

Query: 530 TLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIK 589
                    D    L ++ +++   NV  +             + I+W++P+S       
Sbjct: 210 ---------DQLFALHAIDQINPPLNVTAEIEG--------TRMSIQWEKPVSAFPIHCF 252

Query: 590 GYEVERRERTSGRW 603
            YEV+     +G  
Sbjct: 253 DYEVKIHNTRNGYL 266

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           +     V  G        V  +P P   W+ + + +             S  L + +   
Sbjct: 16  EPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP---------SPVLILPEIGP 66

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTV 306
            D G Y+    +S    + +  V++
Sbjct: 67  QDQGTYSCVATHSSHGPQESRAVSI 91

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 24/143 (16%), Positives = 43/143 (30%), Gaps = 8/143 (5%)

Query: 186 EFRVLAVNKGGPGEPSDPTAPHIARAKKVS---PYINRDQLSDIKVRAGSNFEFDINVIG 242
            ++    ++         T   +   + +S   P         +++             G
Sbjct: 179 SYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQG 238

Query: 243 EPIPTKEWLCNDITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG 300
            P P+  W         K    + +     S  L + D+   DSG Y   V NS G +  
Sbjct: 239 FPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 298

Query: 301 TAKVTVLDIPSPPEGPLKPSNIT 323
              +TV    +P    + P   T
Sbjct: 299 ETVLTVT---APLSAKIDPPTQT 318

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 48.0 bits (114), Expect = 5e-06
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 11/94 (11%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST 272
                  +       V  G    F     G PI T  W+ +   I   +           
Sbjct: 305 TAPLSA-KIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---------- 353

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
            L++   K+ D G+Y   V+N   + + +A++ +
Sbjct: 354 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 32/272 (11%), Positives = 73/272 (26%), Gaps = 50/272 (18%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKS 271
           +  P   ++  + I     +  E +    G P+P   W+ +D T +      + ++ D  
Sbjct: 1   QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60

Query: 272 ---TKLKVFDSKR-GDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGPLKPSNITKSS 326
                 +  D ++   + +Y    +N +G+       V  +          K   I  +S
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 120

Query: 327 CNLEWRAPRD------------DGGTDILHYVVEKMDMETGRW-------VPMGDVSGTY 367
             ++   P              D   +                       V   D   +Y
Sbjct: 121 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSY 180

Query: 368 T-RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV 426
             R ++         R+    ++  +   +  +   +      P    +P         +
Sbjct: 181 QCRTKH---------RLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHT-I 230

Query: 427 DLE------------WTPPKKDGGSPISQYII 446
            L             W   K   G+   Q ++
Sbjct: 231 SLLCPAQGFPAPSFRWY--KFIEGTTRKQAVV 260

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 6/103 (5%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK--LKVFDSKR 281
             + V  G   + + +V G   P  +W+ +   + + D+  I   ++     L +   +R
Sbjct: 10  VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 69

Query: 282 GDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGPLKPSNIT 323
            D+G Y   V++   T+      +TV      P   ++P ++ 
Sbjct: 70  SDAGRYWCQVEDGGETEISQPVWLTVE---GVPFFTVEPKDLA 109

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 12/96 (12%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 271
           +  P+    +  D+ V   + F+     +G P P    W      I        V     
Sbjct: 96  EGVPFF-TVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV----- 149

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTV 306
               +  +    S +++    N  G     TA V +
Sbjct: 150 ----LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 18/127 (14%)

Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
           A N  G  E S         + ++   +                    +V G+P P+  W
Sbjct: 232 AENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWC-----------IPFSVDGQPAPSLRW 280

Query: 251 LCNDITIISKDRFKIVNDDKSTK-------LKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 303
           L N   +           + +         L++      ++G YTL   N +G    +  
Sbjct: 281 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM 340

Query: 304 VTVLDIP 310
              +D P
Sbjct: 341 AAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 20/174 (11%), Positives = 43/174 (24%), Gaps = 22/174 (12%)

Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 279
           + Q+ +  V  G +      V G  +    W+  ++   +    K              +
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-KSGGLPSLGLTLANVT 220

Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSC--------NLEW 331
              +    T   +N  G  + + +V V    S         +              +L W
Sbjct: 221 SDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRW 280

Query: 332 RAPRDDGGTDILHYVVEKMDMETGRWVPMGDV----------SGTYT-RAENLI 374
               +    +   ++  +                        +G YT  A N  
Sbjct: 281 L--FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPF 332

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 46.9 bits (111), Expect = 4e-06
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 13/110 (11%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS---- 279
           SD++V    + +      G   P  EW     +  +   +             F S    
Sbjct: 9   SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGIT 68

Query: 280 ----KRGDSGIYTLAVKNSWGTD--KGTAKVTVLDIPSPPEGPLKPSNIT 323
                R D+G YT  V    G +  + +  +TVL    PP  P      +
Sbjct: 69  FSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL---VPPSKPTISVPSS 115

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 10/102 (9%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKI------- 265
           V P           V  G+      +   G P     W  + I++++ D  K        
Sbjct: 103 VPPSK-PTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161

Query: 266 -VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
              D KS  L        DSG Y    +N +GT   +    +
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 203

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 19/109 (17%)

Query: 231 GSNFEFDINVI--GEPIPTKEWLCND------------ITIISKDRFKIVNDDKSTKLKV 276
           G +   DI      + I   +W                 T   KD +K+    K+  LK+
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL---FKNGTLKI 70

Query: 277 FDSKRGDSGIYTLAVKNSWGTDKGTAK--VTVLDIPSPPEGPLKPSNIT 323
              K  D  IY +++ ++ G +       + + +  S P+      N T
Sbjct: 71  KHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTT 119

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 47.0 bits (111), Expect = 9e-06
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 11/122 (9%)

Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW 250
                   + SD    +  +   ++  +N        VR G N      VIG  +   EW
Sbjct: 160 TTIGDREVD-SDAYYVYRLQVSSINVSVNA---VQTVVRQGENITLMCIVIGNEVVNFEW 215

Query: 251 LCND------ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV 304
                     +  ++     +    +S  L +  ++  DSG YT  V  S    +    +
Sbjct: 216 TYPRKESGRLVEPVTDFLLDMPYHIRSI-LHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274

Query: 305 TV 306
            +
Sbjct: 275 NI 276

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 426 VDLEWTPP-KKDGGSPISQYIIEKKPKYGPWEKA--CIVPANITATSVPDLKEGEEYEFR 482
           VD+ W  P  K     +  Y I    +     K     V  N +   +           R
Sbjct: 36  VDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVR 95

Query: 483 VIAVNKGGPGEPSKASAPVTC 503
           + AV +GG G     S PV  
Sbjct: 96  IAAVTRGGVGPF---SDPVKI 113

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 8/101 (7%)

Query: 308 DIPS-PPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVV---EKMDMETGRWVPMGD 362
             PS  P       N +  + ++ W  P       +++ Y +    +    +   +    
Sbjct: 16  GAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVG 75

Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGE---SLPLVCQSP 400
            +G+  R    +       R+ AV + G    S P+    P
Sbjct: 76  QNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIP 116

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 10/56 (17%), Positives = 22/56 (39%)

Query: 63  KVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
           ++  + +      E   +   +  + ++   +       R+ AV +GG G  SDP 
Sbjct: 56  RISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPV 111

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI--VPANITATSV 470
           P +  V       + + W    +     +  Y I     +   E A    V +   +  +
Sbjct: 22  PTEVGVKVLSSSEISVHWEHVLEK---IVESYQIRYWAAHDKEEAANRVQVTSQEYSARL 78

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
            +L    +Y   V A N  G G P   S  +   
Sbjct: 79  ENLLPDTQYFIEVGACNSAGCGPP---SDMIEAF 109

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 24/123 (19%), Positives = 38/123 (30%), Gaps = 18/123 (14%)

Query: 390 GESLPLVCQSPITAKDPFGRPDR-PGQPTVTDWGKDHVDLEWTPPKKDG--GSPISQYII 446
           G S      +   A      PD  P   T+       + + W  PKK+   G  I  Y I
Sbjct: 1   GSSGSSGISTEEAA------PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNG-VIRGYQI 53

Query: 447 -----EKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPV 501
                                 +    ++ +LK+  +Y   V A N+ G G     S+ +
Sbjct: 54  GYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS---SSEI 110

Query: 502 TCK 504
              
Sbjct: 111 NAT 113

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 9/84 (10%)

Query: 426 VDLEWTPPKKDG--GSPISQYIIEKKPKYGPWEKACI---VPANITATSVPDLKEGEEYE 480
           V + W PP  D   G  I+QY +  +   G      +   +    ++  +  L++  EY 
Sbjct: 35  VRVSWVPPPADSRNG-VITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYR 93

Query: 481 FRVIAVNKGGPGEPSKASAPVTCK 504
             V A    GPG     S+PV  +
Sbjct: 94  VWVRAHTDVGPGPE---SSPVLVR 114

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 13/112 (11%)

Query: 308 DIPS-PPEGPLKPSNITKSSCNLEWRAPRDDGGT-DILHYVV--EKMDMETGRWVPMGDV 363
             PS PP+  +   ++  ++  + W  P  D     I  Y V  E +D E      +  +
Sbjct: 16  STPSAPPQK-VMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGI 74

Query: 364 SGTYTRA--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFGRP 410
           S  ++      L +  +Y   V+A   +G    S P++ +   T +D    P
Sbjct: 75  SREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVR---TDEDVPSGP 123

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 26/121 (21%)

Query: 225 DIKVRAGSNFEFDINV-IGEPIPTKEWLCN-DITIIS--------------KDRFKIVND 268
           ++    GSN    I            WL   +  I+               KDR  +   
Sbjct: 8   NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKT 67

Query: 269 DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCN 328
           + +  L++++  + D G Y + + +          + V ++ S P        I     N
Sbjct: 68  NGA--LRIYNVSKEDRGDYYMRMLHETEDQW-KITMEVYEMVSKP-------MIYWECSN 117

Query: 329 L 329
            
Sbjct: 118 A 118

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           + +  K+  GS        +G PIP  +W  N++ +           +      V     
Sbjct: 9   EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPL---------THETKKLYMVPYVDL 59

Query: 282 GDSGIYTLAVKNSWGT-DKGTAKVTVLDIPS 311
              G Y   V N   + D    ++ + ++ +
Sbjct: 60  EHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 90

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 15/108 (13%)

Query: 200 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITII 258
            + P+ P           +  ++     VR G++  F        P  T  W       +
Sbjct: 3   LAAPSKP---------IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL 53

Query: 259 SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
              R    N      L + + +  D+G Y     N +  D+GTA + V
Sbjct: 54  P-SRAMDFNGI----LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 10/97 (10%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLC----------NDITIISKDRFKIVNDDKSTK 273
             I++  G     +     E     ++              +    K +         + 
Sbjct: 16  HGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST 75

Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP 310
           L +    R D G+YT A  +   T K +  V V + P
Sbjct: 76  LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVFDS 279
           +D+ V  G   E         + +  W+  + T+++      R  +++D   T L   + 
Sbjct: 349 ADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSD--GT-LNFTNV 404

Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
              D+G+YT  V NS G    +A + V       
Sbjct: 405 TVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 426 VDLEWTPPKKD---GGSPISQYIIEKKPKYGPWEKA-CIVPANITATSVPDLKEGEEYEF 481
           + + W PP      G   I+ Y I  +      +    +V     +  +  L  G EY F
Sbjct: 35  IMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNF 92

Query: 482 RVIAVNKGGPGEPSKASAPVTCK 504
           RV A+   G G     +  ++ +
Sbjct: 93  RVAALTINGTGPA---TDWLSAE 112

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 29/121 (23%), Positives = 40/121 (33%), Gaps = 15/121 (12%)

Query: 308 DIPS-PPEGPLKPSNITKSSCNLEWRAPRDD---GGTDILHYVVEKMDMETGRWVPMGDV 363
           D+PS  P+  L        S  + W+ P      G   I  Y +          V    V
Sbjct: 16  DVPSAAPQN-LSLEVRNSKSIMIHWQPPAPATQNG--QITGYKIRYRKASRKSDVTETLV 72

Query: 364 SGTYTRA--ENLIEGHDYNFRVKAVNKIGE---SLPLVCQSPITAKDPFGRPDRPGQPTV 418
           SGT      E L  G +YNFRV A+   G    +  L  +   T +        P     
Sbjct: 73  SGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAE---TFESDLDETRVPEVSGP 129

Query: 419 T 419
           +
Sbjct: 130 S 130

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 9/110 (8%)

Query: 210 RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-----RFK 264
           R +   P I     SD+ V  G     +    G P PT EW      + +          
Sbjct: 4   RQEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRM 62

Query: 265 IVNDDKSTKLKVFDSK--RGDSGIYTLAVKNSWGTDKG-TAKVTVLDIPS 311
           ++       L++   +  R D G+Y    +N  G      A + V     
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAH 112

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           Q+++  V+   +               +WL N  ++   +R  +  ++    L++   KR
Sbjct: 116 QVTNTTVKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSI--LRIDPIKR 172

Query: 282 GDSGIYTLAVKNSWGTDK-GTAKVTVLDIPSPPE 314
            D+G Y   + N     +  + K+ ++     P 
Sbjct: 173 EDAGEYQCEISNPVSVRRSNSIKLDII---FDPH 203

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 43.1 bits (101), Expect = 7e-05
 Identities = 14/98 (14%), Positives = 20/98 (20%), Gaps = 4/98 (4%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND----ITIISKDRFKIVNDD 269
           V P          +    S       V   P P  +WL  +        +        D 
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161

Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
             +        +      T   KN      G      L
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGYL 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 8e-05
 Identities = 10/95 (10%), Positives = 28/95 (29%), Gaps = 1/95 (1%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           + S  +   G       +   + +       ++  ++S+     V+      L     + 
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD-LFFKKVQV 310

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
            D G+YT         +  + ++ V +        
Sbjct: 311 EDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHD 345

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 18/109 (16%)

Query: 221 DQLSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIIS--------------KDRFKI 265
             L  + V +GSN   +I+  + E      W       I               K R ++
Sbjct: 9   GHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRL 68

Query: 266 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-TDKGTAKVTVLDIPSPP 313
             D +S  L +   ++ D+  Y + V    G   +   K+ VLD    P
Sbjct: 69  --DPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKP 115

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 43.4 bits (101), Expect = 9e-05
 Identities = 12/116 (10%), Positives = 27/116 (23%), Gaps = 21/116 (18%)

Query: 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI----------------- 257
           S  ++      ++V  G++                W                        
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194

Query: 258 ----ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI 309
                S +     +   +  L +  +K  D+G     +    G        T+L +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDG--GSPISQYIIEKKPKYGPWEKACIVPANITATSV 470
           P    VT       +L W PP      G  I  Y +  +      E         T  ++
Sbjct: 12  PQNLHVTGLTTSTTELAWDPPVLAERNG-RIISYTVVFRDINSQQELQ--NITTDTRFTL 68

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
             LK    Y+ +V A    G G     S  +  +
Sbjct: 69  TGLKPDTTYDIKVRAWTSKGSGPL---SPSIQSR 99

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 12/102 (11%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDDKSTK 273
           P I   Q        GS+  F  +         T  W  ++  +   +     +      
Sbjct: 11  PQITV-QPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69

Query: 274 --------LKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTV 306
                   L++ + +    G Y   + N +G+     A +T+
Sbjct: 70  ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine phosphatase receptor type J; NMR {Homo sapiens} Length = 104

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 6/99 (6%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
                  +   NI+ +S  L W+   D+  +    Y +          +    VS     
Sbjct: 8   AIQVFD-VTAVNISATSLTLIWKVS-DNESSSNYTYKIHVAGETDSSNLN---VSEPRAV 62

Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFG 408
              L     YN  V  V    E  P   Q   T   P G
Sbjct: 63  IPGLRSSTFYNITVCPVLGDIEGTPGFLQV-HTPPVPSG 100

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 44/297 (14%), Positives = 73/297 (24%), Gaps = 74/297 (24%)

Query: 242 GEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK 299
            E   T  W  +D    + ++   +I    +   L    +K  DSG Y   V+NS    +
Sbjct: 32  NEHKGTITWYKDDSKTPVSTEQASRIHQHKEK--LWFVPAKVEDSGHYYCVVRNSSYCLR 89

Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKS--------SC--------------NLEWRAPRDD 337
                  ++         +     K          C               L+W      
Sbjct: 90  IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKP 149

Query: 338 GGTDILHYVVEKMDMETGRWVPMGDVSGTYT-RAENLIEGHDYN------FRVKAVNK-- 388
              D +H+   K  +     V      G YT  A     G  Y       F     NK  
Sbjct: 150 LLLDNIHFSGVKDRLIVMN-VAEKH-RGNYTCHASYTYLGKQYPITRVIEFITLEENKPT 207

Query: 389 ---------------IGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPP 433
                          +G  + L+C          G+           W  +   ++   P
Sbjct: 208 RPVIVSPANETMEVDLGSQIQLICNV-------TGQL----SDIAY-WKWNGSVIDEDDP 255

Query: 434 KKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG 490
                  + +     +          I   NI+           ++ F   A N  G
Sbjct: 256 ------VLGEDYYSVENPANKRRSTLITVLNISEIESRFY----KHPFTCFAKNTHG 302

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 9/119 (7%)

Query: 218 INRDQLSDIKVRAGSNFEF------DINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
            N   +   K+    +                 +P  +W  +   ++  +       D+ 
Sbjct: 105 YNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR- 163

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLE 330
             L V +      G YT     ++   +      +  I      P +P  ++ ++  +E
Sbjct: 164 --LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETME 220

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 13/112 (11%)

Query: 208 IARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN 267
           +   K   P I       ++V  GS  +   NV G+      W  N   I   D     +
Sbjct: 201 LEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGED 260

Query: 268 ------------DDKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTV 306
                           T L + + +       +T   KN+ G D    ++  
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 15/125 (12%), Positives = 33/125 (26%), Gaps = 15/125 (12%)

Query: 198 GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDIT 256
              SDP    I R   +       Q+S      G       +    + +    +      
Sbjct: 70  SGRSDPIQLEIHRGWLLL------QVSSRVFTEGEPLALRCHAWKDKLVYNVLYY----- 118

Query: 257 IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
              ++         ++ L +  +    +G Y  +             VTV ++   P   
Sbjct: 119 ---RNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLN 175

Query: 317 LKPSN 321
              ++
Sbjct: 176 ASVTS 180

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----------RFKIVNDDKST 272
           L D++V  G +  F +++      T  W  N   + S +          R++I       
Sbjct: 15  LEDVQVYDGEDAVFSLDLSTIIQGT--WFLNGEELKSNEPEGQVEPGALRYRIEQKGLQH 72

Query: 273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
           +L +   K  DSG     V  S    + +A +T+ +   P  G
Sbjct: 73  RLILHAVKHQDSGAL---VGFSCPGVQDSAALTIQESSGPSSG 112

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 26/90 (28%), Gaps = 16/90 (17%)

Query: 426 VDLEWTPPKKD---GGSPISQYII--------EKKPKYGPWEKACIVPANITATSVPDLK 474
            ++ W P       G   +  Y I         K+ +    +K      + T   +P L+
Sbjct: 31  AEVHWDPVPLKSIRG--HLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLE 88

Query: 475 EGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
               Y   V  VN  G G     S      
Sbjct: 89  PFSHYTLNVRVVNGKGEGPA---SPDRVFN 115

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 13/133 (9%)

Query: 191 AVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP--IPTK 248
           A       + S      +   +     ++      I++  G     +     E       
Sbjct: 83  AKINDESYQ-SIMYIVVVVGYRIYDVVLS--PSHGIELSVGEKLVLNCTARTELNVGIDF 139

Query: 249 EWLCN-----DITIISKDRFKIVNDDKSTK---LKVFDSKRGDSGIYTLAVKNSWGTDKG 300
            W           ++++D       +       L +    R D G+YT A  +   T K 
Sbjct: 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 199

Query: 301 TAKVTVLDIPSPP 313
           +  V V + P   
Sbjct: 200 STFVRVHEDPIEG 212

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 3/97 (3%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
           S    + G +     +  G   P   W     + ++    K+ N+  ++ L +     G+
Sbjct: 9   SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG---KVTNEGTTSTLTMNPVSFGN 65

Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPS 320
              Y           +   +V +   P  PE  L   
Sbjct: 66  EHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP 102

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 9/125 (7%)

Query: 192 VNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EW 250
             + G    SD     +  A K  P +     +   ++ G  F     +          W
Sbjct: 165 AQRDGTWLHSDKFTLKVREAIKAIPVV-SVPETSHLLKKGDTFTVVCTIKDVSTSVNSMW 223

Query: 251 LCNDITIISKDRFKIVNDDKSTK-------LKVFDSKRGDSGIYTLAVKNSWGTDKGTAK 303
           L  +       + K  +  +          L +  ++  DSG++     N++G+   T  
Sbjct: 224 LKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTT 283

Query: 304 VTVLD 308
           + V++
Sbjct: 284 LKVVE 288

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 14/104 (13%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-EWLCNDITIISKDRFKIVNDDKS 271
           +  PY    +  D  V A + F       G P P    WL + + + +            
Sbjct: 104 EGLPYFLE-EPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG-------HG 155

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWG-TDKGTAKVTVLDIPSPPE 314
            +  +       +  ++    N+ G T   TA +TVL    P +
Sbjct: 156 PQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITVL----PQQ 195

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 16/115 (13%)

Query: 221 DQLSDIKVRAGSNF-----------EFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD 269
           D +  I+V                 +F+ +       T  W         ++       +
Sbjct: 12  DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPE 71

Query: 270 -----KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKP 319
                +   L    +   D+G YT  ++N+    K    + V+   S    P+K 
Sbjct: 72  NRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL 126

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-------EWLCNDITIISKDRFKI 265
              P + +   S   +  G            P  T        +     +   S+ RF +
Sbjct: 81  HGPPRV-KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 139

Query: 266 VNDDKSTKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
            +    ++L + + +   D G Y     +S G+D+    + V
Sbjct: 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 12/106 (11%)

Query: 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDK 270
           +P+I  D   D+ +  G   E        P+ + +WL  + T++S      R  ++ND  
Sbjct: 352 APFI-MDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLND-- 406

Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP 316
              L        D+G+YT  V N  G    +A + V    +     
Sbjct: 407 -GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS--TAGTHHH 449

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 409 RPDRPGQPTVT--DWGKDHVDLEWTPP--KKDGGSPISQYIIEKKPKYGPWEKACIVPAN 464
           +PD P              +++ W  P    D  S   ++ +  +P     +   +  +N
Sbjct: 7   KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILD-QWQHVELSN 65

Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            TA ++ D   G+EY  +V A +    G  S  S      P
Sbjct: 66  GTAHTITDAYAGKEYIIQVAAKDN-EIGTWSDWSVAAHATP 105

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 15/149 (10%)

Query: 174 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN 233
           G  +      ++E + +     G  +     A          P+ +     D  V AG  
Sbjct: 1   GSGMKETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTS-----DETVVAGGT 55

Query: 234 FEFDINVIGEPIPTKEWLCNDITII--------SKDRFKIVNDDKST-KLKVFDSKRGDS 284
                 V      + +W       +          +R ++V        + + +    D 
Sbjct: 56  VVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADE 115

Query: 285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
           G YT     +       + VTVL IP  P
Sbjct: 116 GEYT-CSIFTMPVRTAKSLVTVLGIPQKP 143

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 40.9 bits (94), Expect = 8e-04
 Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 7/128 (5%)

Query: 377 HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDW-GKDHVDLEWTPPKK 435
                 V AV+K+                   +PD P    +        V++ W  P  
Sbjct: 184 LPIEVMVDAVHKLKYEQYTSSFFI----RDIIKPDPPKNLQLKPLKNSRQVEVSWEYPD- 238

Query: 436 DGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
              +P S + +    +     K        T  +   +   +     V A ++      S
Sbjct: 239 TWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKTSATVICRKNASISVRAQDRYYSSSWS 298

Query: 496 KASAPVTC 503
           + ++ V C
Sbjct: 299 EWAS-VPC 305

>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor, fibronectin type 3 fold, membrane and SOL glycosylation, immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens} PDB: 3di3_B* 3di2_B* Length = 223

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 12/98 (12%), Positives = 34/98 (34%), Gaps = 4/98 (4%)

Query: 409 RPDRPGQPTVTDW-GKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYGPWEKACIVPANIT 466
           +P+ P   +V    G +   + +     +     +  + +  + +    +   +  ++  
Sbjct: 112 KPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTK 171

Query: 467 ATSVP-DLKEGEEYEFRVIA-VNKGGPGEPSKASAPVT 502
            T +   L+    YE +V +  +    G  S+ S    
Sbjct: 172 LTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYY 209

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	616
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	100.0
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	100.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.98
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.98
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.97
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.97
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.97
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.97
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.97
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.96
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.96
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.96
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.95
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.95
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.95
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.95
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.95
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.95
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.94
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.94
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.94
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.94
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.94
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.94
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.94
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.93
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.93
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.93
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.93
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.93
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.93
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.93
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.92
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.92
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.92
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.91
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.91
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.91
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.91
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.9
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.9
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.9
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.9
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.9
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.9
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.89
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.89
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.89
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.89
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.89
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.89
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.89
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.88
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.88
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.88
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.88
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.88
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.88
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.87
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.87
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.87
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.87
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.87
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.87
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.87
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.87
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.87
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.87
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.87
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.86
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.86
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.86
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.86
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.86
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.86
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.85
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.85
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.85
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.85
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.85
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.85
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.84
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.84
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.84
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.83
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.83
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.83
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.82
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.82
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.82
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.81
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.81
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.8
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.8
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.8
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.8
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.8
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.8
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.8
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.79
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.79
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.79
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.79
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.79
3se4_A	414	Interferon alpha/beta receptor 1; type I interfero	99.79
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	99.79
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.79
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.78
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.78
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.78
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.78
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.78
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.78
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.78
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.78
2dtg_E	897	Insulin receptor; IR ectodomain, X-RAY crystallogr	99.77
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.77
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.77
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.77
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.77
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.76
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.76
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.76
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.75
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.75
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.75
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.75
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.74
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.74
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.74
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.73
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.73
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.72
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.72
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.72
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.71
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.71
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.71
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.71
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.71
3bpo_C	314	Interleukin-13 receptor alpha-1 chain; IL4, IL13,	99.7
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.7
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.7
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.7
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.7
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.69
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.69
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.68
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.68
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.68
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.68
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.68
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.68
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.68
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.68
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.68
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.67
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.67
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.67
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.67
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.67
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.67
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.66
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.66
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.66
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.66
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.66
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.66
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.65
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.65
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.65
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.65
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.65
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.64
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.64
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.64
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.64
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.64
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.63
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.63
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.63
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.63
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.63
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	99.63
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.63
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.62
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.62
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.62
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.62
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.61
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.61
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.61
3lb6_C	380	IL-13, interleukin-13 receptor subunit alpha-2; cy	99.61
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.6
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.6
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.6
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.6
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.6
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.6
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.6
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.6
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.6
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.59
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.59
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.59
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.59
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.58
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.58
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	99.58
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	99.58
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.58
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.58
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.58
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.58
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.58
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.58
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.57
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.57
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.56
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.56
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.56
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.56
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	99.56
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.55
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.55
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.55
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.55
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.55
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.55
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.55
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.55
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.55
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.55
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.55
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.54
3lqm_A	201	Interleukin-10 receptor subunit beta; IL-10R2, com	99.54
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.54
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.54
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.54
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.53
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	99.53
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.53
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.53
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.53
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.53
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.52
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.52
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	99.52
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.52
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.51
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.51
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.51
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.51
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.51
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.51
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.51
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.51
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	99.51
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.5
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	99.5
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	99.5
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.5
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.5
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.5
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.5
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.49
1axi_B	236	HGHBP, growth hormone receptor; complex (hormone-r	99.49
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.49
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	99.49
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.49
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.49
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.49
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.49
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.49
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	99.49
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.49
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.49
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	99.49
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.48
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.48
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.48
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.48
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.48
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.48
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.47
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	99.47
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.47
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.47
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.47
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.47
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.46
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	99.46
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.46
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.46
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.46
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.46
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.46
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	99.45
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	99.45
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.45
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.44
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.44
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.44
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	99.44
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.44
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.44
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	99.44
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.43
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.43
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	99.43
2dbj_A	124	Proto-oncogene tyrosine-protein kinase MER precurs	99.43
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.43
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.43
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.43
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.42
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.42
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.42
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.42
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.41
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.41
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.41
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	99.41
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.41
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.41
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.4
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.4
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.4
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.4
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	99.4
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.4
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.39
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.39
1eer_B	227	Epobp, erythropoietin receptor; signal transductio	99.38
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.38
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.38
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	99.38
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.38
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	99.38
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	99.38
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.38
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.38
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	99.38
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.37
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.37
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.37
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	99.37
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.36
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.36
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.36
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.36
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.36
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.35
1wj3_A	117	KIAA1496 protein; beta sandwich, PANG, structural	99.35
4doh_B	206	Interleukin-20 receptor subunit beta; IL10 family	99.35
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	99.35
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	99.35
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.34
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.34
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.34
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.34
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.34
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.34
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	99.34
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.34
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.34
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.34
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.33
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.33
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.33
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.33
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.33
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.32
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.32
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.32
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.32
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.32
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.32
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.31
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.31
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.31
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.31
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.31
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.3
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.3
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	99.3
2cuh_A	115	Tenascin-X; fibronectin type III domain, extracell	99.3
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.3
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.3
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.3
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	99.29
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	99.29
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.29
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.29
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	99.29
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	99.29
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.29
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	99.28
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.28
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.28
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.28
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.28
1he7_A	126	High affinity nerve growth factor receptor; transf	99.28
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.27
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.27
1j8k_A	94	Fibronectin; EDA, TYPEIII domain, protein binding;	99.27
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.27
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.27
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.26
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.26
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.26
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.26
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.26
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.26
2w1n_A	238	O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrol	99.26
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.26
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.25
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.25
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.25
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.25
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.25
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.24
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	99.24
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.24
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.24
3qwq_B	114	Adnectin; cell surface receptor, tyrosine kinase,	99.24
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.23
4doh_R	221	Interleukin-20 receptor subunit alpha; IL10 family	99.23
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.23
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.23
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.23
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.23
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.22
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.22
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.22
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.22
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	99.22
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.21
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.21
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.21
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.21
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.21
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	99.21
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.21
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.21
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	99.21
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.2
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.2
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.2
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.2
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.2
1he7_A	126	High affinity nerve growth factor receptor; transf	99.2
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.2
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.2
1uc6_A	109	CNTF receptor, ciliary neurotrophic factor recepto	99.19
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.19
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.19
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.19
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.19
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.19
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.19
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.18
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	99.18
2dkm_A	104	Collagen alpha-1(XX) chain; FN3 domain, KIAA1510,	99.18
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	99.18
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.18
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.18
3g9v_A	211	Interleukin 22 receptor, alpha 2; cytokine, cytoki	99.18
4go6_B	232	HCF C-terminal chain 1; tandem fibronectin repeat,	99.18
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.18
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.17
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.17
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.17
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.17
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.17
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.17
2ens_A	96	Advanced glycosylation END product-specific recept	99.17
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.16
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.16
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.16
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.16
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.16
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.16
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.16
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.16
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.16
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.16
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.16
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.15
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.15
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.15
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.15
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.15
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.15
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.15

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=3.2e-41  Score=337.21  Aligned_cols=268  Identities=22%  Similarity=0.303  Sum_probs=219.5

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC--cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      ....+..|+.+.|.|.+.+.|.+.+.|++++..+....  ++.+...+....|.|.++...|.|.|+|.|.|..|.....
T Consensus       108 ~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~  187 (389)
T 2jll_A          108 TIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQE  187 (389)
T ss_dssp             CEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEE
T ss_pred             ceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEE
Confidence            33467889999999999999999999999999886543  6677666777899999999999999999999999998888


Q ss_pred             EEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc-cccceEEeccccCCCeEE
Q psy12426        302 AKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-VSGTYTRAENLIEGHDYN  380 (616)
Q Consensus       302 ~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~y~  380 (616)
                      ..+.+...|.+|.. +.+.......+.|.|.++...++.++..|.++++..+...|..... .....+.|.+|.+++.|.
T Consensus       188 ~~l~v~~~P~~P~~-~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  266 (389)
T 2jll_A          188 YILALADVPSSPYG-VKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYE  266 (389)
T ss_dssp             EEEEECCCCCCCEE-EEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEE
T ss_pred             EEEEecCCCCCCcc-eEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEE
Confidence            88888888888765 6677778889999999887777788999999999887777876544 345779999999999999


Q ss_pred             EEEEEEecCcCCCCccccCCEEccCCCC-CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEe
Q psy12426        381 FRVKAVNKIGESLPLVCQSPITAKDPFG-RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKA  458 (616)
Q Consensus       381 ~~v~a~n~~g~~~~~~~s~~~~~~~~~~-~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~  458 (616)
                      |+|.|.|..|.+.++.   ...+.+... +|.+| .+.....+.+++.|+|.+|. ++++++.+|.|+|+..+. .|...
T Consensus       267 ~~v~A~N~~G~~~~s~---~~~~~t~~~~~p~~p-~~~~~~~~~~~v~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~  341 (389)
T 2jll_A          267 IRVAAVNGKGQGDYSK---IEIFQTLPVREPSPP-SIHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWLE  341 (389)
T ss_dssp             EEEEEEESSCBCCCCC---CEEEECCCCCCCCCC-CEEEEEETTTEEEEEECCCC-CCSSCCCEEEEEEEC-----CCBC
T ss_pred             EEEEEEcCCccCCCCc---ceEEEecCCCCCCCC-ccccccCcCCEEEEEEECCC-CCCCcccEEEEEEEeCCCCcceeE
Confidence            9999999999887753   334433333 55555 57777789999999999764 556689999999998665 67655


Q ss_pred             EeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCC
Q psy12426        459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA  497 (616)
Q Consensus       459 ~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~  497 (616)
                      ..+.+....++|.+|.|++.|.|+|+|.|..|.|++|..
T Consensus       342 ~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~  380 (389)
T 2jll_A          342 KKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY  380 (389)
T ss_dssp             CEECTTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEE
T ss_pred             eeccCCcceEEeCCcCCCCEEEEEEEEEcCCcCCCceee
Confidence            566677889999999999999999999999999988854

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=2.1e-36  Score=316.75  Aligned_cols=466  Identities=15%  Similarity=0.157  Sum_probs=301.9

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee------------------------ccceEEEeecC
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL------------------------RPIWEKCAQTE   56 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~------------------------~G~Y~C~a~n~   56 (616)
                      ||.+. ++++++.+.+|+.+.|.|.+.|+|.|.|+|+|+|..|..                        +|.|+|.|.|.
T Consensus         5 pP~f~-~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (570)
T 3b43_A            5 PPYFI-EPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENS   83 (570)
T ss_dssp             CCEEE-ECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCcce-EECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeC
Confidence            67766 679999999999999999999999999999999886631                        89999999998


Q ss_pred             CCC--------------Cc-------------e--eEeeeccCCccc----eeeccccCCC-----------CCceEecC
Q psy12426         57 GDT--------------PK-------------G--KVLDLIEGNHPI----WEKCAQTEGD-----------TPKGKVLD   92 (616)
Q Consensus        57 ~~~--------------~~-------------~--~v~~~~~~~~p~----w~~~~~~~~~-----------~~~l~i~~   92 (616)
                      .|.              |+             +  ..+.|...|.|.    |++++.....           ...|.|.+
T Consensus        84 ~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~  163 (570)
T 3b43_A           84 VGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQ  163 (570)
T ss_dssp             TEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESS
T ss_pred             CceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECc
Confidence            664              11             0  122332334443    9998876322           24688999


Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCCc-----ceeecCCCcee--------e----eecCcccccEEEEeeccCccccc
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTAP-----HIARAKKGKCY--------H----LVGTLLKDSIYEQLKRSGLFDQF  155 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~~-----~~~~~~~p~~~--------~----~~g~p~~~~~~~~~~~~~~~~~~  155 (616)
                      +...|.|.|+|.|.|..|....+.....     .......|..+        .    ..|.|.+.+.|++  ++..+.  
T Consensus       164 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k--~g~~i~--  239 (570)
T 3b43_A          164 TDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK--DNREIR--  239 (570)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEE--TTEECC--
T ss_pred             CChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEE--CCEECc--
Confidence            9999999999999999886543311100     00000111111        1    2288888999999  533222  


Q ss_pred             ccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEE
Q psy12426        156 HLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFE  235 (616)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~  235 (616)
                       ....+...  .......|.|.++..+|.|.|+|.|.|..|....+     ..+ ....+|.+.........+..|+.+.
T Consensus       240 -~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~-----~~l-~V~~~p~~~~~~~~~~~v~~g~~~~  310 (570)
T 3b43_A          240 -PGGNYKMT--LVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS-----AQL-GVQEPPRFIKKLEPSRIVKQDEHTR  310 (570)
T ss_dssp             -TTSSEEEE--EETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEE-----EEE-CCBCCCEEEECCCSBCCEESSCEEE
T ss_pred             -CCCcEEEE--EECCEEEEEEcccCcccCEEEEEEEECCCCcEEEE-----EEE-EeecCCcccccCCCccEEcCCCcEE
Confidence             22222221  12334589999999999999999999998864321     222 1235676654444445688999999


Q ss_pred             EEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCC
Q psy12426        236 FDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG  315 (616)
Q Consensus       236 l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~  315 (616)
                      |.|.+.|.|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..|....++.|.+..+|.....
T Consensus       311 l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~  390 (570)
T 3b43_A          311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK  390 (570)
T ss_dssp             EEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSC
T ss_pred             EEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecC
Confidence            99999999999999999999988777777766666778999999999999999999999999988999999888765444


Q ss_pred             CccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeC-CCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426        316 PLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM-ETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       316 ~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~-~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~  394 (616)
                      +..+....+..+.|.|...... ...+.+|. ..... ...............+.|.++...+.+.|+|.|.|..|....
T Consensus       391 ~~~~~~~~G~~v~l~C~~~g~P-~p~v~W~k-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  468 (570)
T 3b43_A          391 PHPVETLKGADVHLECELQGTP-PFQVSWHK-DKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTC  468 (570)
T ss_dssp             CCCEEECTTCCEEEEEEEESSS-SCCCEEEE-TTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             CCceeecCCCEEEEEEEEecCC-CCEEEEEE-CCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEE
Confidence            3344556678899999864332 11222221 00011 111222222223356889999999999999999999997543


Q ss_pred             ccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-----CceEeEeecCCccEEE
Q psy12426        395 LVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-----PWEKACIVPANITATS  469 (616)
Q Consensus       395 ~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-----~~~~~~~~~~~~~~~~  469 (616)
                         ...+.+..+......+.++.  ......+.|....-..+ ...+.     |...+.     .-............+.
T Consensus       469 ---~~~l~v~~~P~~~~~~~~~~--~~~g~~~~l~c~~~g~p-~~~v~-----W~k~~~~~~~~~~~~~~~~~~~~~~L~  537 (570)
T 3b43_A          469 ---VGSITLKAPPRFVKKLSDIS--TVVGEEVQLQATIEGAE-PISVA-----WFKDKGEIVRESDNIWISYSENIATLQ  537 (570)
T ss_dssp             ---EEEEEECCCCEEEECCCCBC--CBTTCCEEEEEEEESCS-SCCCE-----EEETTEECCCCTTTEEECCCSSEEEEE
T ss_pred             ---EEEEEeccCCcccccCCCce--ecCCCeEEEEEEEecCC-CCEEE-----EEeCCeEeccCCCeEEEEECCCEEEEE
Confidence               22333321110001111111  11233445554421111 00122     222110     0011112223456788


Q ss_pred             cCCCCCCCeEEEEEEEEcCCCCCC
Q psy12426        470 VPDLKEGEEYEFRVIAVNKGGPGE  493 (616)
Q Consensus       470 l~~L~p~t~Y~~~v~a~n~~G~g~  493 (616)
                      |.++.+...-.|.+.|.|..|...
T Consensus       538 i~~~~~~d~G~Y~C~a~N~~G~~~  561 (570)
T 3b43_A          538 FSRAEPANAGKYTCQIKNEAGTQE  561 (570)
T ss_dssp             ESSCCTTCCEEEEEEEECSSCEEE
T ss_pred             ECcCCHHHCEEEEEEEEECCcEEE
Confidence            999999999999999999999754

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=4.1e-36  Score=323.83  Aligned_cols=328  Identities=16%  Similarity=0.255  Sum_probs=249.6

Q ss_pred             cCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeE-EE--ECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEE
Q psy12426        213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE-WL--CNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  289 (616)
Q Consensus       213 ~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c  289 (616)
                      ..+|.|.  .+.++.+..|+++.|.|.+.|.|.+.+. |+  +++..+.......+........|.|.++.+.|.|.|+|
T Consensus       163 ~~~p~~~--~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c  240 (731)
T 2v5y_A          163 TRTPHFL--RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC  240 (731)
T ss_dssp             SSSCEEC--CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEE
T ss_pred             ccccccc--cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEE
Confidence            3556664  3457899999999999999999999988 88  67766543322222111223689999999999999999


Q ss_pred             EEEcCCCC-ceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceE
Q psy12426        290 AVKNSWGT-DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT  368 (616)
Q Consensus       290 ~a~n~~g~-~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~  368 (616)
                      .|.|..|. ....+.+.+..+|.+|.. ..+.......+.|.|..+...++.++..|.|+++.. ...|..........+
T Consensus       241 ~A~n~~G~~~s~~~~l~V~~~P~~~~~-p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~-~~~~~~~~~~~~~~~  318 (731)
T 2v5y_A          241 MIRTEGGVGISNYAELVVKEPPVPIAP-PQLASVGATYLWIQLNANSINGDGPIVAREVEYCTA-SGSWNDRQPVDSTSY  318 (731)
T ss_dssp             EEEETTEEEECCCEEEEEECCCCBSSC-CEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEES-SSSCEEEEECCSSEE
T ss_pred             EEECCCCCcceeeEEEEEecCCCCCCC-cceeccCCceEEEEeCCcccCCCCccEEEEEEEEEC-CCCceEEeccCcceE
Confidence            99999997 677788999999988877 456677888999999987666667899999999875 456766655566889


Q ss_pred             EeccccCCCeEEEEEEEE--ecCcCCCCccccCCEEccCCCC-CCCCCCCCEEEEecCCeEEEEecCCCCC-CCCcceeE
Q psy12426        369 RAENLIEGHDYNFRVKAV--NKIGESLPLVCQSPITAKDPFG-RPDRPGQPTVTDWGKDHVDLEWTPPKKD-GGSPISQY  444 (616)
Q Consensus       369 ~i~~L~~~~~y~~~v~a~--n~~g~~~~~~~s~~~~~~~~~~-~p~~p~~~~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y  444 (616)
                      .+.+|.+++.|.|+|.|.  |..|.+.++   ..+.+.+... +|.+|.++.+...+.+++.|+|.+|... ..+.+.+|
T Consensus       319 ~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S---~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y  395 (731)
T 2v5y_A          319 KIGHLDPDTEYEISVLLTRPGEGGTGSPG---PALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNL  395 (731)
T ss_dssp             EECSCCTTCEEEEEEEEECSSTTCSCCBC---CCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEE
T ss_pred             EEeCCCCCCEEEEEEEEEecCCCccccCC---CcEEeeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeE
Confidence            999999999999999999  999998764   3345544443 4578889999999999999999987532 23468899


Q ss_pred             EEEEeeCCC-CceE----eEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccc
Q psy12426        445 IIEKKPKYG-PWEK----ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQD  519 (616)
Q Consensus       445 ~i~~~~~~~-~~~~----~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~  519 (616)
                      .|+|+.... .+..    ..........++|.+|.|++.|.|+|+|.|..|.|+ |...   ...+.             
T Consensus       396 ~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~-S~~~---~~~T~-------------  458 (731)
T 2v5y_A          396 TVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKE-SQEL---IVQTD-------------  458 (731)
T ss_dssp             EEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEEE-CCCE---EEECC-------------
T ss_pred             EEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCCC-CceE---EEEcc-------------
Confidence            999987763 2221    124456678999999999999999999999999984 4432   22211             


Q ss_pred             eeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCC--CCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEee
Q psy12426        520 MTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPS--KPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRE  597 (616)
Q Consensus       520 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~  597 (616)
                                                        ..+|.+|.  .+.... +.++|.|+|++|... ||.|.+|+|.|+.
T Consensus       459 ----------------------------------~~~P~~p~~~~~~~~~-~~~si~l~W~~P~~~-~g~i~~Y~V~~~~  502 (731)
T 2v5y_A          459 ----------------------------------EDLPGAVPTESIQGST-FEEKIFLQWREPTQT-YGVITLYEITYKA  502 (731)
T ss_dssp             ----------------------------------CCCCCCCCTTTCEEEE-ETTEEEEECCCCSCC-SSCCCEEEEEEEE
T ss_pred             ----------------------------------CCCCCCCCcceEEeee-cCCeEEEEEcCCCCC-CCCccceEEEEEE
Confidence                                              13344443  344433 578999999998654 7899999999997


Q ss_pred             cCC
Q psy12426        598 RTS  600 (616)
Q Consensus       598 ~~~  600 (616)
                      .+.
T Consensus       503 ~~~  505 (731)
T 2v5y_A          503 VSS  505 (731)
T ss_dssp             EEE
T ss_pred             CcC
Confidence            653

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=311.08  Aligned_cols=403  Identities=17%  Similarity=0.212  Sum_probs=245.7

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeee-ee--eCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVD-WR--AGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~-W~--~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      ||.+.  .+.++.|.+|++++|.|.+.|+|.|.|. |+  ++|..+.... +.... .                      
T Consensus       165 ~p~~~--~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~-~~~~~-~----------------------  218 (731)
T 2v5y_A          165 TPHFL--RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE-IKVTS-S----------------------  218 (731)
T ss_dssp             SCEEC--CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEE-EEECC-S----------------------
T ss_pred             ccccc--cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccc-eEEec-c----------------------
Confidence            45554  3678999999999999999999999998 88  7888776321 11000 0                      


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCCCCC-CCCCCCCcceeecC---CCc-------eeeee-------c-Ccc
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG-EPSDPTAPHIARAK---KGK-------CYHLV-------G-TLL  138 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~-~~~~~~~~~~~~~~---~p~-------~~~~~-------g-~p~  138 (616)
                          .....+|.|.++.++|.|.|+|.|.|..|.+ ........ .....   .|.       .+.+.       | .++
T Consensus       219 ----~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V-~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i  293 (731)
T 2v5y_A          219 ----RRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV-KEPPVPIAPPQLASVGATYLWIQLNANSINGDGPI  293 (731)
T ss_dssp             ----SEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEE-ECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCC
T ss_pred             ----ccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEE-ecCCCCCCCcceeccCCceEEEEeCCcccCCCCcc
Confidence                0113589999999999999999999999973 22211100 11111   111       11111       2 566


Q ss_pred             cccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEE--eCCCCCCCCCCCCCEEeccccCCC
Q psy12426        139 KDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV--NKGGPGEPSDPTAPHIARAKKVSP  216 (616)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~--n~~g~~~~s~~~~~~~~~~~~~~P  216 (616)
                      ..|.+++  +       .....|.....  .....+.|.+|.+++.|.|+|.|.  |..|.+..+..   +.+..     
T Consensus       294 ~~Y~v~~--~-------~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~---~~~~t-----  354 (731)
T 2v5y_A          294 VAREVEY--C-------TASGSWNDRQP--VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPA---LRTRT-----  354 (731)
T ss_dssp             CEEEEEE--E-------ESSSSCEEEEE--CCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCC---EEEEC-----
T ss_pred             EEEEEEE--E-------ECCCCceEEec--cCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCc---EEeee-----
Confidence            7788877  4       23445665433  334688899999999999999998  88887654311   00000     


Q ss_pred             ceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        217 YINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       217 ~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                                                                 .                                    
T Consensus       355 -------------------------------------------~------------------------------------  355 (731)
T 2v5y_A          355 -------------------------------------------K------------------------------------  355 (731)
T ss_dssp             -------------------------------------------C------------------------------------
T ss_pred             -------------------------------------------c------------------------------------
Confidence                                                       0                                    


Q ss_pred             CceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCC-CCceEEEEEEEEeCCCCCEE---E---ccccccceEE
Q psy12426        297 TDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDG-GTDILHYVVEKMDMETGRWV---P---MGDVSGTYTR  369 (616)
Q Consensus       297 ~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~-~~~i~~y~v~~~~~~~~~~~---~---~~~~~~~~~~  369 (616)
                               ...+|.+|.+ +.+...+.+++.|+|.++.... ...+.+|.|+|+......+.   .   ........+.
T Consensus       356 ---------~~~p~~~P~~-~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (731)
T 2v5y_A          356 ---------CADPMRGPRK-LEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHT  425 (731)
T ss_dssp             ---------CCCCSCCCEE-EEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEE
T ss_pred             ---------CCCCCCCCce-eEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEE
Confidence                     0123455555 6677788899999999875432 34678999999875533331   1   2224567899


Q ss_pred             eccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCC--CCEEEEecCCeEEEEecCCCCCCCCcceeEEEE
Q psy12426        370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPG--QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE  447 (616)
Q Consensus       370 i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~--~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~  447 (616)
                      +.+|.+++.|.|+|.|.|..|.+.    +..+.+.+...+|.+|.  .+.... ..+++.|+|.+|...++ .|.+|.|+
T Consensus       426 i~~L~p~t~Y~~~V~A~n~~G~s~----S~~~~~~T~~~~P~~p~~~~~~~~~-~~~si~l~W~~P~~~~g-~i~~Y~V~  499 (731)
T 2v5y_A          426 ITNLSPYTNVSVKLILMNPEGRKE----SQELIVQTDEDLPGAVPTESIQGST-FEEKIFLQWREPTQTYG-VITLYEIT  499 (731)
T ss_dssp             ECSCCSSCEEEEEEEEECSSCEEE----CCCEEEECCCCCCCCCCTTTCEEEE-ETTEEEEECCCCSCCSS-CCCEEEEE
T ss_pred             ECCCCCCCEEEEEEEEEcCCCCCC----CceEEEEccCCCCCCCCcceEEeee-cCCeEEEEEcCCCCCCC-CccceEEE
Confidence            999999999999999999999863    56677777778888775  444433 47899999998866555 79999999


Q ss_pred             EeeCCC--------CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccc
Q psy12426        448 KKPKYG--------PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQD  519 (616)
Q Consensus       448 ~~~~~~--------~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~  519 (616)
                      |+..+.        .+.......+....++|.+|.|++.|.|+|+|.|..|.|+++. .. +++.               
T Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~-~~T~---------------  562 (731)
T 2v5y_A          500 YKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQ-FTTK---------------  562 (731)
T ss_dssp             EEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE-EE-EECC---------------
T ss_pred             EEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc-cE-EEcC---------------
Confidence            987653        1122334456678999999999999999999999999998773 11 1111               


Q ss_pred             eeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCe--EEeecCCcEEEEeeCCCCCCCCceeeeEEEEee
Q psy12426        520 MTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPE--ATDVDKDHIKIKWQQPISNGGSAIKGYEVERRE  597 (616)
Q Consensus       520 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~--~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~  597 (616)
                                                        ..+|.+|..+.  ....+.++|.|+|.+|. +.||+|.+|+|.|++
T Consensus       563 ----------------------------------~~~P~~p~~~~~~~~~~~~~si~l~W~pp~-~~~g~I~~Y~v~~~~  607 (731)
T 2v5y_A          563 ----------------------------------ISAPSMPAYELETPLNQTDNTVTVMLKPAH-SRGAPVSVYQIVVEE  607 (731)
T ss_dssp             ----------------------------------CCCCCC----------------------------------------
T ss_pred             ----------------------------------CCCCCCCCcccccccccCCceEEEEEeCCC-CCCCceEEEEEEEEe
Confidence                                              12344444332  34568899999999874 458999999999987


Q ss_pred             cCC
Q psy12426        598 RTS  600 (616)
Q Consensus       598 ~~~  600 (616)
                      .+.
T Consensus       608 ~~~  610 (731)
T 2v5y_A          608 ERP  610 (731)
T ss_dssp             ---
T ss_pred             cCC
Confidence            654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=7.5e-33  Score=289.78  Aligned_cols=378  Identities=15%  Similarity=0.186  Sum_probs=261.9

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee------------------------ccceEEEeecC
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL------------------------RPIWEKCAQTE   56 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~------------------------~G~Y~C~a~n~   56 (616)
                      ||.+. ..+.++.+.+|+.+.|.|.+.|.|+|.|+|+|||..+..                        +|.|+|.|.|.
T Consensus       101 ~p~~~-~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  179 (570)
T 3b43_A          101 PPSFA-RKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNP  179 (570)
T ss_dssp             CCEES-SCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCccc-ccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeC
Confidence            34554 447888999999999999999999999999999976631                        79999999998


Q ss_pred             CCC--------------Cc-------------e--eEeeeccCCccc----eeeccccCCC-----------CCceEecC
Q psy12426         57 GDT--------------PK-------------G--KVLDLIEGNHPI----WEKCAQTEGD-----------TPKGKVLD   92 (616)
Q Consensus        57 ~~~--------------~~-------------~--~v~~~~~~~~p~----w~~~~~~~~~-----------~~~l~i~~   92 (616)
                      .|.              |+             +  ..+.|...|.|.    |.+++.....           ...|.|.+
T Consensus       180 ~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~  259 (570)
T 3b43_A          180 LGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLK  259 (570)
T ss_dssp             TEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESS
T ss_pred             CcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcc
Confidence            654              10             0  122232224443    9998775322           25689999


Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCCc----ceeecCCCc-------eee----eecCcccccEEEEeeccCccccccc
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTAP----HIARAKKGK-------CYH----LVGTLLKDSIYEQLKRSGLFDQFHL  157 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~~----~~~~~~~p~-------~~~----~~g~p~~~~~~~~~~~~~~~~~~~~  157 (616)
                      +...|.|.|+|.|.|..|....+.....    ..+....+.       .+.    ..|.|.+.+.|++  ++..+.   .
T Consensus       260 v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k--~~~~l~---~  334 (570)
T 3b43_A          260 VTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK--DETEIQ---E  334 (570)
T ss_dssp             BCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEE--TTEECC---C
T ss_pred             cCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeE--CCEECC---C
Confidence            9999999999999999886543311111    011111111       111    2288999999999  533222   2


Q ss_pred             CCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEE
Q psy12426        158 CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFD  237 (616)
Q Consensus       158 ~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~  237 (616)
                      ...+...  .......|.|.++..+|.|.|+|.|.|..|....+     ..+. ...+|.+ ...+....+..|+.+.|.
T Consensus       335 ~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~-----~~l~-V~~~P~~-~~~~~~~~~~~G~~v~l~  405 (570)
T 3b43_A          335 SSKFRMS--FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS-----TSLK-VKEPPVF-RKKPHPVETLKGADVHLE  405 (570)
T ss_dssp             SSSEEEE--EETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEE-----EEEC-EECCCEE-CSCCCCEEECTTCCEEEE
T ss_pred             CCcEEEE--EECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEE-----EEEE-ecCCCee-ecCCCceeecCCCEEEEE
Confidence            2222221  12334579999999999999999999999864422     1111 1356666 344567788899999999


Q ss_pred             EEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCc
Q psy12426        238 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPL  317 (616)
Q Consensus       238 c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~  317 (616)
                      |.+.|.|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..|.....+.+.+..+|.....+.
T Consensus       406 C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~  485 (570)
T 3b43_A          406 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLS  485 (570)
T ss_dssp             EEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCC
T ss_pred             EEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCC
Confidence            99999999999999999999888888877777777999999999999999999999999998888999888776443322


Q ss_pred             cceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeC-CCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426        318 KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM-ETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       318 ~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~-~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~  394 (616)
                      ......+..+.|.|...... ...+.+|.-..... ...............+.|.++...+.+.|.|.|.|..|....
T Consensus       486 ~~~~~~g~~~~l~c~~~g~p-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  562 (570)
T 3b43_A          486 DISTVVGEEVQLQATIEGAE-PISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQEC  562 (570)
T ss_dssp             CBCCBTTCCEEEEEEEESCS-SCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEE
T ss_pred             CceecCCCeEEEEEEEecCC-CCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEE
Confidence            34445677888888763321 11222221000000 111111222233467899999999999999999999997543

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=100.00  E-value=6.8e-33  Score=292.28  Aligned_cols=478  Identities=14%  Similarity=0.113  Sum_probs=292.6

Q ss_pred             CCceEecCCCeEEEEEEEe-------eecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          9 LGDIKLSAGTTLKFDANII-------GEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~-------g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |++.+|.+|+.|+|.|.+.       |.|.|.|.|++||..+.. ..|+-.                             
T Consensus        10 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~-~~~~~~-----------------------------   59 (589)
T 3l5h_A           10 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPK-EQYTII-----------------------------   59 (589)
T ss_dssp             CSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCG-GGCBCC-----------------------------
T ss_pred             cCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECCh-HHcccc-----------------------------
Confidence            7888999999999999988       778899999999987762 232110                             


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCC-CCCCCCcceeecCCCceeeee----------------cCcccccEEE
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE-PSDPTAPHIARAKKGKCYHLV----------------GTLLKDSIYE  144 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~-~~~~~~~~~~~~~~p~~~~~~----------------g~p~~~~~~~  144 (616)
                      ......|+|.++...+.+ |.|.+........ ..........++..|.++...                ..+...|.++
T Consensus        60 ~~~~~~l~i~~~~~~~~~-y~C~~~~~~~~~~~~~~~~l~v~~pP~~P~nl~c~~~~~~~~~~~W~~~~~~~~~~~y~l~  138 (589)
T 3l5h_A           60 NRTASSVTFTDIASLNIQ-LTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLK  138 (589)
T ss_dssp             SSSCCBCCCCCCCSSCCC-CCCC-CCTTCC-CCCCCCCCCC-CCCCCCEEEEEEEETTSCEEEEEECCSCCSSCEEEEEC
T ss_pred             CCcEeEEEEecCCCccee-eEEecccCCCcccEEEeEEEeccCCCCCCEeeEEEECCCceEEEEECCCCcCCcCceEEEE
Confidence            122567888998887654 6688763221111 110111112344556666522                1223445555


Q ss_pred             EeeccCcccccccCCCceEecccCCCCCeEEee-cccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc----ccCCCcee
Q psy12426        145 QLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVL-DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA----KKVSPYIN  219 (616)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~----~~~~P~~~  219 (616)
                      +  .       .....+..+....+....+.|. ++.+...|.|+|.|.|..|......    +.+..    .+.+|.  
T Consensus       139 ~--~-------~~~~~~~~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~----~~~~~~~~~~p~pP~--  203 (589)
T 3l5h_A          139 S--E-------WATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDH----INFDPVYKVKPNPPH--  203 (589)
T ss_dssp             C--B-------CSSSBCCCEECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCC----EEECGGGSEECCCCC--
T ss_pred             E--E-------EcCCCcccCCCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCccccc----EEEccccEEEcCCCc--
Confidence            4  2       1122233333333334556676 7899999999999999999854321    22211    233342  


Q ss_pred             ccCCcceEEE----cCCeEEEEEEEeeec-Cc----eeEEEECCeeecccCcEEE---EecCCceEEEecCCCCCCcEEE
Q psy12426        220 RDQLSDIKVR----AGSNFEFDINVIGEP-IP----TKEWLCNDITIISKDRFKI---VNDDKSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       220 ~~~~~~~~v~----~g~~~~l~c~~~~~p-~~----~~~W~~~~~~~~~~~~~~~---~~~~~~~~l~i~~l~~~~~g~y  287 (616)
                           .+.+.    ....+.|.+...... .+    .+.|...+..    ....+   ........+.|.+|.+...|.|
T Consensus       204 -----~~~~~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~~~~~~~~----~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~  274 (589)
T 3l5h_A          204 -----NLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAS----TWSQIPPEDTASTRSSFTVQDLKPFTEYVF  274 (589)
T ss_dssp             -----SCEEECTTTCTTCEEEECCCCGGGGTSCEEEEEEEEETTCS----CCBCCCTTSSCSCCSEEEECSCCSSCCEEE
T ss_pred             -----eEEEEecCCCCCeEEEEeCCCCCCCeeeEEEEEEECCCCCC----CcEEEccccCcCceeEEEECCCCCCCEEEE
Confidence                 23331    223455554322111 01    2333332211    00001   0112345889999999999999


Q ss_pred             EEEEEcCCCCcee---eEEEEEecCCCCCC-CCc---cc---eeecCCeEEEEEeCC-CCCCCCceEEEEEEEEeCCCCC
Q psy12426        288 TLAVKNSWGTDKG---TAKVTVLDIPSPPE-GPL---KP---SNITKSSCNLEWRAP-RDDGGTDILHYVVEKMDMETGR  356 (616)
Q Consensus       288 ~c~a~n~~g~~~~---~~~l~v~~~p~~p~-~~~---~~---~~~~~~~~~l~W~~~-~~~~~~~i~~y~v~~~~~~~~~  356 (616)
                      ++.|.|..|.+..   +..+.+...+..|. .|.   .+   .......+.|.|+++ ....+..+.+|.|.++.... .
T Consensus       275 ~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~-~  353 (589)
T 3l5h_A          275 RIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS-H  353 (589)
T ss_dssp             EEEEEESSSCSCCCCCCCCBCCCCCCCCCCSCCCEEEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTS-C
T ss_pred             EEEEEeCCCCCccCCCCCccccccCccCCCCCCcEEEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCC-C
Confidence            9999998876432   33444444444442 221   12   234567899999964 33345689999999865433 2


Q ss_pred             EEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCC
Q psy12426        357 WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKD  436 (616)
Q Consensus       357 ~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~  436 (616)
                      |... ......+.+  |.+++.|.|+|.|.|..|.+..+..   ........+|.++.++.+... .+++.|+|.+|.. 
T Consensus       354 ~~~~-~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~---~~~~~~~~~~~p~~~l~~~~~-~~si~l~W~~p~~-  425 (589)
T 3l5h_A          354 LQNY-TVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVL---TIPACDFQATHPVMDLKAFPK-DNMLWVEWTTPRE-  425 (589)
T ss_dssp             CCBC-CCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCC---CCCCTTCCCCSCCCSCEEEEC-SSSEEEECCCCSS-
T ss_pred             ceee-ccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEE---EeecccccCCCCcceEEEEEC-CCeEEEEEECCCC-
Confidence            3222 122233443  8899999999999999999876532   111122234556668887765 6899999998753 


Q ss_pred             CCCcceeEEEEEeeCCCC----ceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCee
Q psy12426        437 GGSPISQYIIEKKPKYGP----WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVI  512 (616)
Q Consensus       437 ~~~~i~~Y~i~~~~~~~~----~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~  512 (616)
                         .+.+|.|+|+..+..    .............+.+.+|.|++.|.|+|+|.|..|.|..+..    ...        
T Consensus       426 ---~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~g~g~~~~~----~~~--------  490 (589)
T 3l5h_A          426 ---SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI----KAY--------  490 (589)
T ss_dssp             ---CCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSCCCSSSEEEEEECBEETTEECCCEEE----EEE--------
T ss_pred             ---CccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhccccCcEEEEEEEEEeCCcccCCEEE----EEE--------
Confidence               588999999887641    1111122333556778999999999999999999999876421    111        


Q ss_pred             ccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCC-CCCCCCceeee
Q psy12426        513 DQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQP-ISNGGSAIKGY  591 (616)
Q Consensus       513 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p-~~~~~~~i~~Y  591 (616)
                                                             +...+|.+|..+.+...+.+++.|+|++| ..+.+|.|.+|
T Consensus       491 ---------------------------------------t~~~~P~~pp~l~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y  531 (589)
T 3l5h_A          491 ---------------------------------------LKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNY  531 (589)
T ss_dssp             ---------------------------------------SSCCCCSSCCCCCEECCCSSCBEEBCCCCCHHHHCSCEEEE
T ss_pred             ---------------------------------------eccCCCCCCCeEEEeecccceEEEEecCCCHHHcCccceeE
Confidence                                                   11234555667888899999999999984 35558999999


Q ss_pred             EEEEeecCCCCeE
Q psy12426        592 EVERRERTSGRWI  604 (616)
Q Consensus       592 ~i~~~~~~~~~w~  604 (616)
                      +|.|+..++.+|.
T Consensus       532 ~v~~~~~~~~~~~  544 (589)
T 3l5h_A          532 TIFYRTIIGNETA  544 (589)
T ss_dssp             EECCBCSSCCCCC
T ss_pred             EEEEEeCCCCeEE
Confidence            9999988877774

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=100.00  E-value=1.1e-30  Score=251.49  Aligned_cols=225  Identities=29%  Similarity=0.494  Sum_probs=183.8

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEec--cccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR--AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW  250 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~--~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W  250 (616)
                      .|.|.+++.+|.|.|+|.|.|..|....+   ..+.+.  +....|.+ ...+....+..|+.+.|.|.+.+.|.+.+.|
T Consensus        63 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~---~~l~V~~~p~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W  138 (305)
T 2nzi_A           63 QLIIASVTDDDATVYQVRATNQGGSVSGT---ASLEVEVPAKIHLPKT-LEGMGAVHALRGEVVSIKIPFSGKPDPVITW  138 (305)
T ss_dssp             EEEESSCCGGGCSEEEEEEEETTEEEEEE---EEEEECEEEEECCCHH-HHSSCCEEEETTCCEEEEEEEEEESCCEEEE
T ss_pred             EEEEccCChhhCeEEEEEEEcCCCCccce---EEEEEecCCccCCCcc-ccccccEEecCCCEEEEEEEECCCCCCEEEE
Confidence            67788888888888888888876653211   112221  11112221 1223567788999999999999999999999


Q ss_pred             EECCeeecccCcEEEEecCCceEEEecC-CCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEE
Q psy12426        251 LCNDITIISKDRFKIVNDDKSTKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNL  329 (616)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~-l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l  329 (616)
                      ++++..+....++.+...+....|.|.+ +...|.|.|+|.|.|..|.......+.+...|.+|.. +.+.......+.|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~-~~~~~~~~~~v~l  217 (305)
T 2nzi_A          139 QKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRG-VKVSDVSRDSVNL  217 (305)
T ss_dssp             EESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEE-EEEESCCSSCEEE
T ss_pred             EECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCC-ceeeeccCCEEEE
Confidence            9999988877788877777778999999 9999999999999999999999999999999988876 6677778899999


Q ss_pred             EEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEE
Q psy12426        330 EWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT  402 (616)
Q Consensus       330 ~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~  402 (616)
                      +|..|..+++..+..|.++++......|..........+.|.+|.+++.|.|+|.|.|..|.+.++..+..++
T Consensus       218 ~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~~  290 (305)
T 2nzi_A          218 TWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTI  290 (305)
T ss_dssp             EEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCEE
T ss_pred             EEcCCccCCCCceeEEEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCEE
Confidence            9998877778899999999999888899888766678899999999999999999999999999887666655

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.98  E-value=6.2e-30  Score=255.33  Aligned_cols=319  Identities=18%  Similarity=0.239  Sum_probs=236.1

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Ceeecc-----cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITIIS-----KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      +.+..+.+|+.+.|.|.+.|.|.+.+.|+++  +..+..     ..++.+........|.|.+++..|.|.|+|.|.|..
T Consensus         7 ~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   86 (389)
T 2jll_A            7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI   86 (389)
T ss_dssp             CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSS
T ss_pred             cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCC
Confidence            4567788999999999999999999999999  877754     456777666667799999999999999999999999


Q ss_pred             CCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC----C---CCEEEccccccceE
Q psy12426        296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME----T---GRWVPMGDVSGTYT  368 (616)
Q Consensus       296 g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~----~---~~~~~~~~~~~~~~  368 (616)
                      |.....+.|.|..+|.....+.......+..+.|.|......    ..  .+.|...+    .   .............+
T Consensus        87 g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p----~~--~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L  160 (389)
T 2jll_A           87 GGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNP----PA--SIHWRRDKLVLPAKNTTNLKTYSTGRKMIL  160 (389)
T ss_dssp             CEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEES----CC--EEEEEETTEESSCTTCTTEEEEECSSCEEE
T ss_pred             CCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecC----CC--eEEEEECCccCCcccCceEEEeccCCEEEE
Confidence            998888899998777654432222445677889999753221    11  23332211    1   11222222334578


Q ss_pred             EeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEE
Q psy12426        369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK  448 (616)
Q Consensus       369 ~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~  448 (616)
                      .|.++...+.|.|+|.|.|..|....   ...+.+   ...|.+|..+.+.....+++.|.|.+|..+++.++.+|.|+|
T Consensus       161 ~i~~~~~~d~G~Y~C~a~N~~G~~~~---~~~l~v---~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~  234 (389)
T 2jll_A          161 EIAPTSDNDFGRYNCTATNHIGTRFQ---EYILAL---ADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDV  234 (389)
T ss_dssp             EECCCSTTSSEEEEEEEEETTEEEEE---EEEEEE---CCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEE
T ss_pred             EECCCChhhCEEEEEEEEcCCCcEEE---EEEEEe---cCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEE
Confidence            99999999999999999999987532   222232   356778878888888899999999988777777899999999


Q ss_pred             eeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecc
Q psy12426        449 KPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNP  527 (616)
Q Consensus       449 ~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~  527 (616)
                      +..+. .|.... .......++|.+|.+++.|.|+|.|.|..|.|.+|......+...                      
T Consensus       235 ~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~----------------------  291 (389)
T 2jll_A          235 KEVASEIWKIVR-SHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPV----------------------  291 (389)
T ss_dssp             EETTCSCCEEEE-CSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCC----------------------
T ss_pred             EECCCcccEEee-ccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCC----------------------
Confidence            98876 776543 344567899999999999999999999999998887543322110                      


Q ss_pred             eeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCCCeEE
Q psy12426        528 FITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIK  605 (616)
Q Consensus       528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~w~~  605 (616)
                                                 .+|.+|. +.....+.+++.|+|.+|. +++++|.+|+|+|+..+..+|..
T Consensus       292 ---------------------------~~p~~p~-~~~~~~~~~~v~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~  340 (389)
T 2jll_A          292 ---------------------------REPSPPS-IHGQPSSGKSFKLSITKQD-DGGAPILEYIVKYRSKDKEDQWL  340 (389)
T ss_dssp             ---------------------------CCCCCCC-EEEEEETTTEEEEEECCCC-CCSSCCCEEEEEEEC-----CCB
T ss_pred             ---------------------------CCCCCCc-cccccCcCCEEEEEEECCC-CCCCcccEEEEEEEeCCCCccee
Confidence                                       2355553 5566679999999999875 45899999999999888888874

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.98  E-value=1.6e-30  Score=285.04  Aligned_cols=406  Identities=13%  Similarity=0.071  Sum_probs=255.3

Q ss_pred             CceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcc--eeecCCCc--------eee----eecCcccccEEEEeeccCc
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH--IARAKKGK--------CYH----LVGTLLKDSIYEQLKRSGL  151 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~--~~~~~~p~--------~~~----~~g~p~~~~~~~~~~~~~~  151 (616)
                      ..|.|.++...|.|.|+|.|.|..|...........  ......|.        .+.    ..|.|.+.+.|++  ++..
T Consensus       306 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k--~g~~  383 (816)
T 3dmk_A          306 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK--DGKA  383 (816)
T ss_dssp             TEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEE--TTEE
T ss_pred             ceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEE--CCEE
Confidence            579999999999999999999988854332111100  00001111        111    2277888999998  4211


Q ss_pred             ccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcC
Q psy12426        152 FDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAG  231 (616)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g  231 (616)
                                     +......|.|.+++.+|.|.|+|.|.|..|....+   ..+.+.....+|.+. ..+....+..|
T Consensus       384 ---------------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~---~~l~v~~~~~~p~i~-~~~~~~~v~~G  444 (816)
T 3dmk_A          384 ---------------IGHSESVLRIESVKKEDKGMYQCFVRNDRESAEAS---AELKLGGRFDPPVIR-QAFQEETMEPG  444 (816)
T ss_dssp             ---------------CSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEEC---CEEECCCSSCCCEEE-EECCCEEECSS
T ss_pred             ---------------CCCCCCEEEEcCCCHHHCEEEEEEEECCCCcEEEE---EEEEEccccCCCceE-ecCcceEEcCC
Confidence                           12234589999999999999999999988754322   234444445667664 34566788999


Q ss_pred             CeEEEEEEEeeecCceeEEEECCeeecccCcEEEEe----c-CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        232 SNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN----D-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       232 ~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~----~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.+.|.|.+.+.|.+.+.|++++..+....++....    . .....|.|.++...|.|.|+|.|.|..|....+..+.+
T Consensus       445 ~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V  524 (816)
T 3dmk_A          445 PSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV  524 (816)
T ss_dssp             SCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEE
Confidence            999999999999999999999999987766665432    1 22357999999999999999999999999888889998


Q ss_pred             ecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC----CCEEEccccccceEEecccc-CCCeEEE
Q psy12426        307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET----GRWVPMGDVSGTYTRAENLI-EGHDYNF  381 (616)
Q Consensus       307 ~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~----~~~~~~~~~~~~~~~i~~L~-~~~~y~~  381 (616)
                      ..+|..... .......+..+.|.|....    .+..  .+.|...+.    ......  .....+.|.++. ..+.+.|
T Consensus       525 ~~~p~~~~~-~~~~v~~G~~v~l~C~~~g----~p~~--~i~W~k~~~~l~~~~~~~~--~~~~~l~i~~v~~~~d~G~Y  595 (816)
T 3dmk_A          525 YGLPYIRQM-EKKAIVAGETLIVTCPVAG----YPID--SIVWERDNRALPINRKQKV--FPNGTLIIENVERNSDQATY  595 (816)
T ss_dssp             CSSCEECCC-CCEEEETTCCEEEECCEEC----SSEE--EEEEEETTEESCCSTTEEE--CTTSEEEESSCCHHHHCEEE
T ss_pred             ecCCeeEcc-CCeEEecCCeEEEEEEecC----CCCC--EEEEEECCeEcccCCceEE--ecCCeEEEEecCccccCEEE
Confidence            877643322 2234566888999997532    2333  333332211    000111  123468888886 5788999


Q ss_pred             EEEEEecCcCCCCccccCCEEccCCC-CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCC-----c
Q psy12426        382 RVKAVNKIGESLPLVCQSPITAKDPF-GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-----W  455 (616)
Q Consensus       382 ~v~a~n~~g~~~~~~~s~~~~~~~~~-~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~-----~  455 (616)
                      +|.|.|..|.....  ...+.+.... ..+..+....  ......+.|.+.....+..     ..+.|...+..     .
T Consensus       596 ~C~a~n~~g~~~~~--~~~v~v~~~p~~~~~~~~~~~--~~~G~~v~L~C~~~~~~~~-----~~i~W~~~g~~l~~~~~  666 (816)
T 3dmk_A          596 TCVAKNQEGYSARG--SLEVQVMVLPRIIPFAFEEGP--AQVGQYLTLHCSVPGGDLP-----LNIDWTLDGQAISEDLG  666 (816)
T ss_dssp             EEEEEESSSCEEEE--EEEEEEECCCCCBCCCCCSSC--EESSCEEEEEEBCCCSSSC-----CEEEEEETTBCCCGGGT
T ss_pred             EEEEEECCCceeee--eEEEEEecCCccccccccccc--cCCCCeEEEEEEEeCCCCC-----CEEEEEECCeEcCCCCC
Confidence            99999998854321  1222222111 1111112222  2346789999985332211     13344444321     1


Q ss_pred             eEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeec-------cccccceeeee----
Q psy12426        456 EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVID-------QYALQDMTAQE----  524 (616)
Q Consensus       456 ~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~-------~~~~~~~~v~~----  524 (616)
                      ............++|.++.......|++.|.|..|....+....+.      .+|.+.       ......+.|.|    
T Consensus       667 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~------~~P~~~~~~~~~~v~~G~~v~l~C~~~g  740 (816)
T 3dmk_A          667 ITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY------VPPRWILEPTDKAFAQGSDAKVECKADG  740 (816)
T ss_dssp             CEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEE------EEEEEEECCCCEEEETTCCEEEECEEEE
T ss_pred             eeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEE------eCCceeeecccceecCCCcEEEEEEEec
Confidence            1112233345679999999999999999999999876433322211      234332       11233444544    


Q ss_pred             -ecceeEEEeeCe
Q psy12426        525 -YNPFITLLFKNF  536 (616)
Q Consensus       525 -~~~~~~~~~~~~  536 (616)
                       ..|.++|.+++.
T Consensus       741 ~P~p~i~W~k~~~  753 (816)
T 3dmk_A          741 FPKPQVTWKKAVG  753 (816)
T ss_dssp             ESCCEEECCEECS
T ss_pred             CCCCeEEEEecCC
Confidence             238999999765

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.97  E-value=1.1e-28  Score=262.81  Aligned_cols=435  Identities=11%  Similarity=0.056  Sum_probs=274.1

Q ss_pred             CceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee----------------------ccceEEEeecCCCCC-------
Q psy12426         10 GDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL----------------------RPIWEKCAQTEGDTP-------   60 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~----------------------~G~Y~C~a~n~~~~~-------   60 (616)
                      ....+.+|+.+.|.|.+.| |.|.|+|+|+|..+..                      +|.|+|.|.|..+..       
T Consensus       119 ~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l  197 (642)
T 1e07_A          119 NSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVIL  197 (642)
T ss_pred             CceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEE
Confidence            3466889999999999998 9999999999876531                      899999999975531       


Q ss_pred             ------c-------------e--eEeeeccCCccc----eeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         61 ------K-------------G--KVLDLIEGNHPI----WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        61 ------~-------------~--~v~~~~~~~~p~----w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                            .             +  ..+.|...|.|.    |++++........|.|.++...|.|.|+|.|.|..|....+
T Consensus       198 ~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s  277 (642)
T 1e07_A          198 NVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRT  277 (642)
T ss_pred             EEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcccCCceEEecccccCCeEEEEEEEeCCCceEEe
Confidence                  0             0  122333335554    99999887777899999999999999999999998865433


Q ss_pred             CCCCcceeec-CCC-------c------eeee----ecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEee
Q psy12426        116 DPTAPHIARA-KKG-------K------CYHL----VGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVL  177 (616)
Q Consensus       116 ~~~~~~~~~~-~~p-------~------~~~~----~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  177 (616)
                      .......... ..|       .      .+.+    .|.| +.+.|++  ++..+.   ......    .......|.|.
T Consensus       278 ~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~--~g~~l~---~~~~~~----~~~~~~~L~i~  347 (642)
T 1e07_A          278 TVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWV--NNQSLP---VSPRLQ----LSNDNRTLTLL  347 (642)
T ss_pred             eeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC-ccEEEEE--CCccCC---CcCCEE----EeCCCCEEEEe
Confidence            1111100000 001       0      0111    1555 6899998  532221   111111    12234589999


Q ss_pred             cccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeee
Q psy12426        178 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI  257 (616)
Q Consensus       178 ~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~  257 (616)
                      ++..+|.|.|+|.|.|..|......  ..+.+.   .+|.+....+....+..|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus       348 ~~~~~d~G~Y~C~a~n~~g~~~s~~--~~l~V~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~  422 (642)
T 1e07_A          348 SVTRNDVGPYECGIQNELSVDHSDP--VILNVL---YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQ  422 (642)
T ss_pred             ccCcccCeeEEEEEeCCCCCcceee--EEEEEE---cCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEc
Confidence            9999999999999999988643221  122222   22222122345677889999999999999999999999999876


Q ss_pred             cccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee--EEEEEecCCCCCCC-C-ccceeecCCeEEEEEeC
Q psy12426        258 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT--AKVTVLDIPSPPEG-P-LKPSNITKSSCNLEWRA  333 (616)
Q Consensus       258 ~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~--~~l~v~~~p~~p~~-~-~~~~~~~~~~~~l~W~~  333 (616)
                      ...           ..|.|.++...|.|.|+|.|.|..|....+  ..+.+...+.+|.- . -......+..+.|.|..
T Consensus       423 ~~~-----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~  491 (642)
T 1e07_A          423 QHT-----------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP  491 (642)
T ss_pred             CCC-----------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEEC
Confidence            432           279999999999999999999998876544  44555543333321 0 11223467789999986


Q ss_pred             CCCCCCCceEEEEEEEE--eCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCC-
Q psy12426        334 PRDDGGTDILHYVVEKM--DMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP-  410 (616)
Q Consensus       334 ~~~~~~~~i~~y~v~~~--~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p-  410 (616)
                      ..     +...+.+...  ........... .....+.|.++...+.+.|+|.|.|..|.....  ...+.+......+ 
T Consensus       492 ~~-----~~~~i~W~~~g~~l~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~--~~~l~V~~~p~~~~  563 (642)
T 1e07_A          492 EA-----QNTTYLWWVNGQSLPVSPRLQLS-NGNRTLTLFNVTRNDARAYVCGIQNSVSANRSD--PVTLDVLYGPDTPI  563 (642)
T ss_pred             CC-----CCcEEEEEECCEeCCCCCcEEEc-CCCcEEEEeecChhcCceEEEEeEcCCCCccCC--CEEEEEEeCCCcce
Confidence            41     1122222211  11111111111 123578999999999999999999998864321  1233332111111 


Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG  490 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G  490 (616)
                      ..|.+..  ......+.|.+.....+   +.   .+.|...+.      .. .....+.|.++.+.....|.+.|.|..|
T Consensus       564 ~~~~~~~--v~~g~~~~l~C~~~g~p---~p---~v~W~~~g~------~i-~~~~~L~i~~~~~~d~G~Y~C~a~N~~G  628 (642)
T 1e07_A          564 ISPPDSS--YLSGANLNLSCHSASNP---SP---QYSWRINGI------PQ-QHTQVLFIAKITPNNNGTYACFVSNLAT  628 (642)
T ss_pred             ecCCcee--EEcCCcEEEEEEeccCC---CC---eEEEEECCE------EC-ccCceEEECcccccCCeEEEEEEEeccc
Confidence            1122222  23456778887742211   11   344444442      11 1234788889999999999999999999


Q ss_pred             CCCC
Q psy12426        491 PGEP  494 (616)
Q Consensus       491 ~g~~  494 (616)
                      ....
T Consensus       629 ~~~~  632 (642)
T 1e07_A          629 GRNN  632 (642)
T ss_pred             Ccce
Confidence            7543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.97  E-value=2.3e-30  Score=257.15  Aligned_cols=285  Identities=16%  Similarity=0.247  Sum_probs=202.6

Q ss_pred             CCccCCCCCCceEe---cCCCeEEEEEEEeeecCCeeeeeeCCeeeee-----------------------ccceEEEee
Q psy12426          1 APHIDRRHLGDIKL---SAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-----------------------RPIWEKCAQ   54 (616)
Q Consensus         1 ~P~i~~~~~~~~~v---~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-----------------------~G~Y~C~a~   54 (616)
                      +|.+..+ |.+..+   .+|+.+.|.|.+.|+|.|.|+|+|||..|..                       +|.|+|.|.
T Consensus         5 ~P~f~~~-P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~   83 (384)
T 3kld_A            5 GPVFVQE-PSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIAT   83 (384)
T ss_dssp             EEEEEEC-CCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             CCEEEeC-CcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEE
Confidence            3666655 777776   6899999999999999999999999987631                       899999999


Q ss_pred             cCCCCC---ce-------------------------eEeeec-cCCccc----eeeccccC---------CCCCceEecC
Q psy12426         55 TEGDTP---KG-------------------------KVLDLI-EGNHPI----WEKCAQTE---------GDTPKGKVLD   92 (616)
Q Consensus        55 n~~~~~---~~-------------------------~v~~~~-~~~~p~----w~~~~~~~---------~~~~~l~i~~   92 (616)
                      |..|..   ..                         .++.|. ..+.|.    |.+.+.+.         .....|.|.+
T Consensus        84 N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~  163 (384)
T 3kld_A           84 NSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAK  163 (384)
T ss_dssp             ETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESS
T ss_pred             cCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEee
Confidence            986641   00                         111221 112222    88776542         2346799999


Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCCc-------------ceeecCCCcee--------e----eecCcccccEEEEee
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTAP-------------HIARAKKGKCY--------H----LVGTLLKDSIYEQLK  147 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~~-------------~~~~~~~p~~~--------~----~~g~p~~~~~~~~~~  147 (616)
                      +...|.|.|+|.|.|..|..........             ..+....|..+        .    ..|.|.+.+.|++  
T Consensus       164 v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k--  241 (384)
T 3kld_A          164 VEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRR--  241 (384)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEE--
T ss_pred             cCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEe--
Confidence            9999999999999998775321110000             00111122221        1    2288999999998  


Q ss_pred             ccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceE
Q psy12426        148 RSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIK  227 (616)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~  227 (616)
                      .++..   .... .    ........|.|.+++.+|.|.|+|.|.|..|....+   ..+.+   ..+|.+ ...+.+..
T Consensus       242 ~~~~~---~~~~-~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~---~~l~v---~~~P~~-~~~~~~~~  306 (384)
T 3kld_A          242 ADGKP---IARK-A----RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAK---GQLTF---YAQPNW-VQIINDIH  306 (384)
T ss_dssp             TTCCC---CCTT-C----EECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE---EEEEE---EEEEEE-EECCCCEE
T ss_pred             CCCcc---cccc-c----eecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEE---EEEEE---ecCCcc-ccCCCceE
Confidence            53311   0111 1    112334589999999999999999999998864322   11222   234555 33456788


Q ss_pred             EEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        228 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       228 v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      +..|+.+.|.|.+.|.|.|.+.|++++..+....++.+.. +   .|.|.++...|.|.|+|.|.|..|....++.|.|.
T Consensus       307 v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~-~---~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          307 VAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ-G---TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             ECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEET-T---EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeC-C---EEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence            9999999999999999999999999999988777776543 2   89999999999999999999999999988888875

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.97  E-value=6.3e-28  Score=257.08  Aligned_cols=348  Identities=13%  Similarity=0.096  Sum_probs=242.7

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-------------ccceEEEeecCCCCC---------------
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-------------RPIWEKCAQTEGDTP---------------   60 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-------------~G~Y~C~a~n~~~~~---------------   60 (616)
                      +.+..+.+|+.+.|.|.+.|+|.|.|+|+|+|..+..             +|.|+|.|.|..|..               
T Consensus       210 ~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~  289 (642)
T 1e07_A          210 PLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPP  289 (642)
T ss_pred             cCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcccCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCC
Confidence            5677899999999999999999999999999987632             999999999986530               


Q ss_pred             c-------------e--eEeeeccCCccc---eeeccccC---------CCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         61 K-------------G--KVLDLIEGNHPI---WEKCAQTE---------GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        61 ~-------------~--~v~~~~~~~~p~---w~~~~~~~---------~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      .             +  ..+.|...|.|.   |++++...         .....|.|.++...|.|.|+|.|.|..|...
T Consensus       290 ~p~i~~~~~~~~~~g~~v~l~C~~~~~p~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  369 (642)
T 1e07_A          290 KPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDH  369 (642)
T ss_pred             CCEEEcCCceeEecCCcEEEEEECCCCCccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcc
Confidence            0             0  112232224443   99987652         1346799999999999999999999988643


Q ss_pred             CCCCCCcceeec------CCCc--------eee----eecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEE
Q psy12426        114 PSDPTAPHIARA------KKGK--------CYH----LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGK  175 (616)
Q Consensus       114 ~~~~~~~~~~~~------~~p~--------~~~----~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  175 (616)
                      ... ..+ .+..      ..|.        .+.    ..|.|.+.+.|++  ++..+                .....|.
T Consensus       370 s~~-~~l-~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~--~g~~~----------------~~~~~L~  429 (642)
T 1e07_A          370 SDP-VIL-NVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI--DGNIQ----------------QHTQELF  429 (642)
T ss_pred             eee-EEE-EEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEE--CCEEc----------------CCCceEE
Confidence            221 111 1110      0111        111    1278888999998  41111                1234799


Q ss_pred             eecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCe
Q psy12426        176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI  255 (616)
Q Consensus       176 i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~  255 (616)
                      |.++...|.|.|+|.|.|..|....+. ...+.+.....+|.+..  .....+..|+.+.|.|.+.+ |.+.+.|++++.
T Consensus       430 i~~~~~~d~G~Y~C~a~n~~g~~~~s~-~~~v~v~~~~~~p~i~~--~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~  505 (642)
T 1e07_A          430 ISNITEKNSGLYTCQANNSASGHSRTT-VKTITVSAELPKPSISS--NNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQ  505 (642)
T ss_pred             EccCChhhCeEEEEEEEcCCCCCcccc-eEEEEEeccCCCceEec--CCceeecCCCeEEEEEECCC-CCcEEEEEECCE
Confidence            999999999999999999998654332 22344443344565532  34567889999999999984 788999999999


Q ss_pred             eecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEEecCCCCCC-CCccceeecCCeEEEEEeC
Q psy12426        256 TIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPSPPE-GPLKPSNITKSSCNLEWRA  333 (616)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~-~~~~~~~~~~~~~~l~W~~  333 (616)
                      .+....++.+...  ...|.|.++...|.|.|+|.|.|..|.. ...+.|.|...|..+. .+.......+..+.|.|..
T Consensus       506 ~l~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~  583 (642)
T 1e07_A          506 SLPVSPRLQLSNG--NRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHS  583 (642)
T ss_pred             eCCCCCcEEEcCC--CcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEe
Confidence            9887777766543  3489999999999999999999999875 3467888876654332 1122445567889999986


Q ss_pred             CCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426        334 PRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       334 ~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~  394 (616)
                      ....    ...  +.|...+..    .  .....+.|.++...+.+.|+|.|.|..|....
T Consensus       584 ~g~p----~p~--v~W~~~g~~----i--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  632 (642)
T 1e07_A          584 ASNP----SPQ--YSWRINGIP----Q--QHTQVLFIAKITPNNNGTYACFVSNLATGRNN  632 (642)
T ss_pred             ccCC----CCe--EEEEECCEE----C--ccCceEEECcccccCCeEEEEEEEecccCcce
Confidence            4322    122  333222110    1  12357889999999999999999999997543

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.97  E-value=4.3e-29  Score=273.69  Aligned_cols=452  Identities=16%  Similarity=0.144  Sum_probs=278.6

Q ss_pred             CceEecCCCeEEEEEEEeeecCCeeeeeeCCee-------------------eee-------ccceEEEeecCCCC----
Q psy12426         10 GDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNP-------------------LNL-------RPIWEKCAQTEGDT----   59 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~-------------------l~~-------~G~Y~C~a~n~~~~----   59 (616)
                      ....+.+|+.+.|.|.+.|.|.|.|+|+|++..                   |.+       +|.|+|.|.|..|.    
T Consensus       256 ~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~  335 (816)
T 3dmk_A          256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE  335 (816)
T ss_dssp             EEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             cceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCcceecCCceEeccceEEECCCCHhHCEEEEEEEEcCCCceEEE
Confidence            467899999999999999999999999995321                   111       89999999998764    


Q ss_pred             --------------Cce--------eEeeeccCCccc----eeeccccC-CCCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         60 --------------PKG--------KVLDLIEGNHPI----WEKCAQTE-GDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        60 --------------~~~--------~v~~~~~~~~p~----w~~~~~~~-~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                                    +..        ..+.|...|.|.    |++++... .....|.|.++...|.|.|+|.|.|..|..
T Consensus       336 ~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  415 (816)
T 3dmk_A          336 TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESA  415 (816)
T ss_dssp             EEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             EEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCCCEEEEcCCCHHHCEEEEEEEECCCCcE
Confidence                          110        112232224443    99998874 345689999999999999999999988865


Q ss_pred             CCCCCCCc------ceeecC---------CCceee--eecCcccccEEEEeeccCcccccccCCCceEecc--cC-CCCC
Q psy12426        113 EPSDPTAP------HIARAK---------KGKCYH--LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQ--TE-GDTP  172 (616)
Q Consensus       113 ~~~~~~~~------~~~~~~---------~p~~~~--~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~  172 (616)
                      ..+.....      ..+...         ....+.  ..|.|.+.+.|++  ++..+.   ..........  .. ....
T Consensus       416 ~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~--~g~~l~---~~~~~~~~~~~~~~~~~~~  490 (816)
T 3dmk_A          416 EASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL--DGKKIA---NNDRYQVGQYVTVNGDVVS  490 (816)
T ss_dssp             EECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEE--TTEECC---SCTTEEEEEEECTTSCEEE
T ss_pred             EEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEE--CCEECC---CCCCcccccEEecCCCcEE
Confidence            44421111      000000         001111  2288889999998  532221   1222221111  11 1223


Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.++...|.|.|+|.|.|..|....+   ..+.+   ..+|.+  ..+....+..|+.+.|.|.+.+.|.+.+.|++
T Consensus       491 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~---~~l~V---~~~p~~--~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k  562 (816)
T 3dmk_A          491 YLNITSVHANDGGLYKCIAKSKVGVAEHS---AKLNV---YGLPYI--RQMEKKAIVAGETLIVTCPVAGYPIDSIVWER  562 (816)
T ss_dssp             EEEESSCCTTTCEEEEEEEEETTEEEEEE---EEEEE---CSSCEE--CCCCCEEEETTCCEEEECCEECSSEEEEEEEE
T ss_pred             EEEEeeccccCCEEEEEEEEECCCeEEEE---EEEEE---ecCCee--EccCCeEEecCCeEEEEEEecCCCCCEEEEEE
Confidence            69999999999999999999998864322   11222   234443  23345678899999999999999999999999


Q ss_pred             CCeeecccCcEEEEecCCceEEEecCCC-CCCcEEEEEEEEcCCCCc-eeeEEEEEecCCCCCCCC-ccceeecCCeEEE
Q psy12426        253 NDITIISKDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPSPPEGP-LKPSNITKSSCNL  329 (616)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~-~~~~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~~-~~~~~~~~~~~~l  329 (616)
                      ++..+....+..+...+   .|.|.++. ..|.|.|+|.|.|..|.. .....+.+..+|...... .......+..+.|
T Consensus       563 ~~~~l~~~~~~~~~~~~---~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L  639 (816)
T 3dmk_A          563 DNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL  639 (816)
T ss_dssp             TTEESCCSTTEEECTTS---EEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEE
T ss_pred             CCeEcccCCceEEecCC---eEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEE
Confidence            99988766666554443   89999998 589999999999998854 445666666665432211 2234556889999


Q ss_pred             EEeCCCCCCCCceEEEEEEEEeCCCC-----CEEEc-cccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEc
Q psy12426        330 EWRAPRDDGGTDILHYVVEKMDMETG-----RWVPM-GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITA  403 (616)
Q Consensus       330 ~W~~~~~~~~~~i~~y~v~~~~~~~~-----~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~  403 (616)
                      .|......   ....+  .|...+..     .+... .......+.|.++...+.+.|+|.|.|..|.....   ..+.+
T Consensus       640 ~C~~~~~~---~~~~i--~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~---~~l~V  711 (816)
T 3dmk_A          640 HCSVPGGD---LPLNI--DWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT---TPLNV  711 (816)
T ss_dssp             EEBCCCSS---SCCEE--EEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEE---EEECE
T ss_pred             EEEEeCCC---CCCEE--EEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEE---EEEEE
Confidence            99864332   11122  22222111     11111 11234578999999999999999999998875432   12222


Q ss_pred             cCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC----CceEeE---eecCCccEEEcCCCCCC
Q psy12426        404 KDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWEKAC---IVPANITATSVPDLKEG  476 (616)
Q Consensus       404 ~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~----~~~~~~---~~~~~~~~~~l~~L~p~  476 (616)
                      ..+...-..|.+..+  .....+.|.......+    .-  .|.|...+.    ......   ........+.|.++...
T Consensus       712 ~~~P~~~~~~~~~~v--~~G~~v~l~C~~~g~P----~p--~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  783 (816)
T 3dmk_A          712 YVPPRWILEPTDKAF--AQGSDAKVECKADGFP----KP--QVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKT  783 (816)
T ss_dssp             EEEEEEEECCCCEEE--ETTCCEEEECEEEEES----CC--EEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGG
T ss_pred             EeCCceeeeccccee--cCCCcEEEEEEEecCC----CC--eEEEEecCCCCCccccccccCCCEEecCCEEEECcCChh
Confidence            110000011222221  2344455555421111    11  122222211    000000   00001347889999999


Q ss_pred             CeEEEEEEEEcCCCCCC
Q psy12426        477 EEYEFRVIAVNKGGPGE  493 (616)
Q Consensus       477 t~Y~~~v~a~n~~G~g~  493 (616)
                      ..-.|.+.|.|..|...
T Consensus       784 d~G~Y~C~a~N~~G~~~  800 (816)
T 3dmk_A          784 NEGYYLCEAINGIGSGL  800 (816)
T ss_dssp             GCEEEEEEEECSSSSCE
T ss_pred             hCeEEEEEEEeCCCCCc
Confidence            99999999999999865

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.97  E-value=1.8e-28  Score=234.95  Aligned_cols=271  Identities=18%  Similarity=0.135  Sum_probs=206.0

Q ss_pred             CcceEEEcCCeEEEEEEEeee-------cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGE-------PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~-------p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      +.+..+..|+++.|.|.+.+.       |.+.+.|.+++..+..+ ++.+. ++....|.|.++... .|.|+|.|.+. 
T Consensus        11 P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~-~~~~~~L~i~~~~~~-~g~Y~C~a~~~-   86 (303)
T 1i1r_A           11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTII-NRTASSVTFTDIASL-NIQLTCNILTF-   86 (303)
T ss_dssp             SSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEE-ETTEEEEEECSCCCS-EEEEEEEEEET-
T ss_pred             cCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeee-CCcEEEEEEcCcCCC-ceEEEEecccC-
Confidence            456789999999999999964       77899999999987544 44443 334568999999987 59999999884 


Q ss_pred             CCc---eeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEE-ccccccceEEec
Q psy12426        296 GTD---KGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP-MGDVSGTYTRAE  371 (616)
Q Consensus       296 g~~---~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~-~~~~~~~~~~i~  371 (616)
                      |..   .....+.+..+|.+|.+ +.+.......+.|+|.++.+.+  .+..|.|+++......|.. ........+.+.
T Consensus        87 g~~~~~~~~~~l~v~~~P~~P~~-l~~~~~~~~~v~l~W~~~~~~~--~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~  163 (303)
T 1i1r_A           87 GQLEQNVYGITIISGLPPEKPKN-LSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHKFADCKAKRDTPTSCTVD  163 (303)
T ss_dssp             TTEEEEEEEEEEEEECCCCCCEE-EEEEEETTSCCEEEEECCSCCS--SCCEEEEEEEETTEECCCEECCSSCTTEEECS
T ss_pred             CCcceEEEEEEEeccCCCCCCee-eEEEECCCCcEEEEccCCCCCC--CCcCEEEEEEecCCCCccCCCcCCCceEEEEC
Confidence            433   23455667778888877 6676777789999999876543  3579999997653322211 122445789999


Q ss_pred             cc-cCCCeEEEEEEEEecCcCCCCccccCCEEc-cCCCCCCCCCCCCEEEEe--cCCeEEEEecCCCCCCCCcceeEEEE
Q psy12426        372 NL-IEGHDYNFRVKAVNKIGESLPLVCQSPITA-KDPFGRPDRPGQPTVTDW--GKDHVDLEWTPPKKDGGSPISQYIIE  447 (616)
Q Consensus       372 ~L-~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~-~~~~~~p~~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~i~~Y~i~  447 (616)
                      +| .+++.|.|+|.|.|..|.+...    ...+ .....+|++|.++.+...  +.+++.|+|.+|...++ .+.+|+|+
T Consensus       164 ~L~~p~t~Y~f~V~A~N~~G~~~s~----~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~~-~i~~Y~v~  238 (303)
T 1i1r_A          164 YSTVYFVNIEVWVEAENALGKVTSD----HINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV-IILKYNIQ  238 (303)
T ss_dssp             SCCCTTSCEEEEEEEEETTEEEECC----CEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGGT-SCEEEEEE
T ss_pred             CcCcccccEEEEEEEEcCCCCcccC----CEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCCCc-ccEEEEEE
Confidence            99 8999999999999999987532    1121 112246788888887654  67899999998876444 79999999


Q ss_pred             EeeCCC-CceEeEee--cCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426        448 KKPKYG-PWEKACIV--PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       448 ~~~~~~-~~~~~~~~--~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      |+..++ .|......  ......++|.+|.|++.|.|+|+|.|..|.|++|..+..+...+
T Consensus       239 y~~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T  299 (303)
T 1i1r_A          239 YRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT  299 (303)
T ss_dssp             EEETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEEC
T ss_pred             EEeCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeC
Confidence            998876 78765321  44567999999999999999999999999999999888766654

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.96  E-value=3.8e-26  Score=242.40  Aligned_cols=375  Identities=16%  Similarity=0.203  Sum_probs=231.3

Q ss_pred             CCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEE----cCC--
Q psy12426        159 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVR----AGS--  232 (616)
Q Consensus       159 ~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~----~g~--  232 (616)
                      ..|.....  .....+.|.+|.++..|.|+|.|.|..|....+.....+.......+|.    .+.++.+.    ...  
T Consensus       212 ~~w~~v~~--~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~----~P~~l~~~~~~~~~~g~  285 (680)
T 1zlg_A          212 THWQTVAQ--TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPP----APANLRLANSTVNSDGS  285 (680)
T ss_pred             CceEEEEe--cCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCC----CCCceEeeeeeecCCCc
Confidence            46766543  3456799999999999999999999998433333333333321111221    12333332    223  


Q ss_pred             -eEEEEEEEeeecC-----ceeEEEEC--Cee-ecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426        233 -NFEFDINVIGEPI-----PTKEWLCN--DIT-IISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       233 -~~~l~c~~~~~p~-----~~~~W~~~--~~~-~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                       .+.|.+.....+.     ..+.|...  +.. ............+....+.|.+|.+...|.|++.|.|..|.+..+..
T Consensus       286 ~sv~l~W~pP~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~  365 (680)
T 1zlg_A          286 VTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSA  365 (680)
T ss_pred             eEEEEEecCCCCCCCceeEEEEEEEecccccccCCccceEEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCC
Confidence             5555554221111     13444421  110 00111222233344568999999999999999999998887643332


Q ss_pred             ---EEEecCCCCC--CCCccceeecCCeEEE-----------EEeCCCCCCCCceEEEEEEEEeCCCCC-------E---
Q psy12426        304 ---VTVLDIPSPP--EGPLKPSNITKSSCNL-----------EWRAPRDDGGTDILHYVVEKMDMETGR-------W---  357 (616)
Q Consensus       304 ---l~v~~~p~~p--~~~~~~~~~~~~~~~l-----------~W~~~~~~~~~~i~~y~v~~~~~~~~~-------~---  357 (616)
                         +.+...+..|  .+ +.+......++.|           .|.+|...  ..+..|.|.|.......       |   
T Consensus       366 ~~~v~~~T~~~~P~p~~-l~~~~~s~tsi~lp~~~~~~~~~l~W~~P~~~--~~~~~y~v~w~~~~~~~v~~Y~V~w~~~  442 (680)
T 1zlg_A          366 KVSLHFTSTHATNNKEQ-LVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQ--DGQLQVKVYWKKTEDPTVNRYHVRWFPE  442 (680)
T ss_pred             ceeEEEECCCCCCCccc-cccccccCccccccccccCCCccccccCCccc--CCcceEEEEEeCCCCCccceEEEEEeee
Confidence               5554443333  33 4555555666655           99877532  23567888776543221       1   


Q ss_pred             ---------EE--ccccccceEEeccccCCCeEEEEEEEEecCcCCCCccc---c-----------CCEEccCC-----C
Q psy12426        358 ---------VP--MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVC---Q-----------SPITAKDP-----F  407 (616)
Q Consensus       358 ---------~~--~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~---s-----------~~~~~~~~-----~  407 (616)
                               ..  ........+.+.+|.+++.|.|+|.|.|..|.+.....   +           ..+.....     .
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~s~~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~  522 (680)
T 1zlg_A          443 ACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLS  522 (680)
T ss_pred             ecccCCCCcceeeeeeccCceEEecCCCCCCeEEEEEEEecCCCCCCccccceeCCCccccccCCccccccCCCCccccc
Confidence                     11  11234567899999999999999999999996532110   0           01111100     0


Q ss_pred             CCCCCCCC----CEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-C----ceEe-----EeecCCccEEEcCCC
Q psy12426        408 GRPDRPGQ----PTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-P----WEKA-----CIVPANITATSVPDL  473 (616)
Q Consensus       408 ~~p~~p~~----~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~----~~~~-----~~~~~~~~~~~l~~L  473 (616)
                      ..+.+|.+    +.+...+.+ +.|+|.+|..+.++.|++|.|+|+...+ .    +...     ..++++...++|.+|
T Consensus       523 ~v~~~P~~l~~~v~v~~~~~t-i~lsW~pP~~~~ng~I~gY~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L  601 (680)
T 1zlg_A          523 KVLAKPENLSASFIVQDVNIT-GHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNL  601 (680)
T ss_pred             cccCCccccceeEEEeccCce-EEEEecCCCCCCCCCceeEEEEEEEccCCCccccccceeeecccccCCcccEEEecCC
Confidence            12366777    455555555 9999998865445689999999986532 1    1111     123356789999999


Q ss_pred             CCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeee
Q psy12426        474 KEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYI  553 (616)
Q Consensus       474 ~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (616)
                      .|++.|.|+|+|.|..|.|+. ....+.|.                                                  
T Consensus       602 ~p~t~Y~~~V~A~n~~G~G~~-~~~~~~T~--------------------------------------------------  630 (680)
T 1zlg_A          602 RPSTLYRLEVQVLTPGGEGPA-TIKTFRTP--------------------------------------------------  630 (680)
T ss_pred             CCCceEEEEEEEEcCCCcCCC-cceEEECC--------------------------------------------------
Confidence            999999999999999999987 33222211                                                  


Q ss_pred             ecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeec
Q psy12426        554 DNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRER  598 (616)
Q Consensus       554 ~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~  598 (616)
                      ..+|.+|..+.+...+    .|+|++|....+.+|.+|.|.|+-.
T Consensus       631 ~~~P~~P~~l~v~~~~----~l~W~pP~~~~G~~I~~~~~~~~~~  671 (680)
T 1zlg_A          631 ELPPSSAHRSHLKHRH----PHHYKPSPERYGKPIPNPLLGLDST  671 (680)
T ss_pred             CCCCCCCCCCeEEecc----ceeECCCCCCCCCccceeeEEEeec
Confidence            1346777777765543    8999999888799999999999844

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.96  E-value=4.1e-28  Score=233.43  Aligned_cols=279  Identities=13%  Similarity=0.109  Sum_probs=202.4

Q ss_pred             cceEEEcCCeEEEEEEEeee-----cCceeEEEECCeeecccCcEEEEecCC-ceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        224 SDIKVRAGSNFEFDINVIGE-----PIPTKEWLCNDITIISKDRFKIVNDDK-STKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~-----p~~~~~W~~~~~~~~~~~~~~~~~~~~-~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      .+..+..|+++.|.|.+.+.     |.+.+.|.+++..+.. .++.....+. ...|+|.+++..|.|.|+|.+.+..+.
T Consensus         8 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B            8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPG-GRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             SCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTT-CEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred             CCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCc-cceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence            45678899999999999997     5789999999987743 3322222222 268999999999999999998664444


Q ss_pred             ceeeEEEEEecCCCCCCCCccceee-cCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC------CCEEEccc-cccceEE
Q psy12426        298 DKGTAKVTVLDIPSPPEGPLKPSNI-TKSSCNLEWRAPRDDGGTDILHYVVEKMDMET------GRWVPMGD-VSGTYTR  369 (616)
Q Consensus       298 ~~~~~~l~v~~~p~~p~~~~~~~~~-~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~------~~~~~~~~-~~~~~~~  369 (616)
                      ....+.+.+..+|.+|.+ +.+... ....+.++|.++.+. +. ...|.|+++....      ..|..+.. .....+.
T Consensus        87 ~~~~~~l~v~~~P~~P~~-l~c~~~~~~~~~~~~W~~~~~~-~~-~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (313)
T 2d9q_B           87 ILDQVELRAGYPPAIPHN-LSCLMNLTTSSLICQWEPGPET-HL-PTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCS  163 (313)
T ss_dssp             EEEEEEEEECCCCCCCEE-EEEEEETTTTEEEEEEECCSCC-SS-CCEEEEEEEECCTTSCSCCCCEEEECCCTTCSEEE
T ss_pred             eEEEEEEccCCCCCCCcc-ceeeECCCCccEEEEecCCCCC-CC-ceeEEEEEEecCCCcccCCcccccCCCCCCCcEEE
Confidence            445667777888888876 666555 357999999976653 33 4569999876532      33554432 2223445


Q ss_pred             e--ccccCCCeEEEEEEEEecCcCCCCccccCCEEccC-CCCCCCCCCCCEEEEe------cCCeEEEEecCCCCCCCCc
Q psy12426        370 A--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD-PFGRPDRPGQPTVTDW------GKDHVDLEWTPPKKDGGSP  440 (616)
Q Consensus       370 i--~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~-~~~~p~~p~~~~~~~~------~~~~v~l~W~~p~~~~~~~  440 (616)
                      +  .+|.+++.|.|+|.|.|..|.+..    ..+.+.. ...+|++|.++.+...      ..+++.|+|++|.. ++..
T Consensus       164 ~~~~~L~~~~~Y~f~V~A~N~~G~~~s----~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~-~~~~  238 (313)
T 2d9q_B          164 IPRKHLLLYQNMGIWVQAENALGTSMS----PQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQP-GLHI  238 (313)
T ss_dssp             EEGGGCCSSSCEEEEEEEEETTEEEEC----CCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGG-GTTS
T ss_pred             ECccccccceeEEEEEEEECCCCCccC----ccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCC-CCce
Confidence            5  569999999999999999998532    2222222 2245888888776655      46899999998764 3434


Q ss_pred             ceeEEEEEe-eCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCe
Q psy12426        441 ISQYIIEKK-PKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPV  511 (616)
Q Consensus       441 i~~Y~i~~~-~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~  511 (616)
                      +.+|+|+|+ ..++ .|............++|.+|.|++.|.|||+|.|..|.|.+|..+......+...+|.
T Consensus       239 ~l~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~  311 (313)
T 2d9q_B          239 NQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA  311 (313)
T ss_dssp             CEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC----
T ss_pred             eEEEEEEEccCCCCCCcEEcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCCC
Confidence            679999999 5554 8887655555678899999999999999999999999999998888888777666664

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.96  E-value=2e-27  Score=236.46  Aligned_cols=282  Identities=17%  Similarity=0.208  Sum_probs=201.9

Q ss_pred             CCccCCCCCCceEe---cCCCeEEEEEEEeeecCCeeeeeeCCeeeee-----------------------ccceEEEee
Q psy12426          1 APHIDRRHLGDIKL---SAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-----------------------RPIWEKCAQ   54 (616)
Q Consensus         1 ~P~i~~~~~~~~~v---~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-----------------------~G~Y~C~a~   54 (616)
                      ||.|..+ |.+..+   .+|+.|.|.|.+.|+|.|.|+|+|+|..+..                       +|.|+|.|.
T Consensus         4 ~P~~~~~-p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~   82 (382)
T 1cs6_A            4 GPVFEEQ-PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT   82 (382)
T ss_dssp             EEEEEEC-CCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             CCEEEEC-CCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEE
Confidence            5777755 778776   7999999999999999999999999886531                       899999999


Q ss_pred             cCCCCC-------------------c-------e--eEeeec-cCCccc----eeeccccC-----------CCCCceEe
Q psy12426         55 TEGDTP-------------------K-------G--KVLDLI-EGNHPI----WEKCAQTE-----------GDTPKGKV   90 (616)
Q Consensus        55 n~~~~~-------------------~-------~--~v~~~~-~~~~p~----w~~~~~~~-----------~~~~~l~i   90 (616)
                      |..|..                   .       +  ..+.|. ..+.|.    |.+.+...           .....|.|
T Consensus        83 n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i  162 (382)
T 1cs6_A           83 NARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYI  162 (382)
T ss_dssp             ETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEE
T ss_pred             cCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEE
Confidence            986530                   0       0  111222 233343    98876542           22367999


Q ss_pred             cCcccCCeEEEEEEEEcCCCCCCCCC---CCC-----------cceeecCCCceee------------eecCcccccEEE
Q psy12426         91 LDLIEGNQYEFRVLAVNKGGPGEPSD---PTA-----------PHIARAKKGKCYH------------LVGTLLKDSIYE  144 (616)
Q Consensus        91 ~~l~~~~~~~y~c~a~n~~g~~~~~~---~~~-----------~~~~~~~~p~~~~------------~~g~p~~~~~~~  144 (616)
                      .++...|.|.|+|.|.|..|......   ...           ...+....|....            ..|.|.+.+.|+
T Consensus       163 ~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~  242 (382)
T 1cs6_A          163 AKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR  242 (382)
T ss_dssp             SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEE
T ss_pred             EeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEE
Confidence            99999999999999999875322110   000           0011111222211            227788899999


Q ss_pred             EeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCc
Q psy12426        145 QLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLS  224 (616)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~  224 (616)
                      +  .++.+.   .        ........|.|.++...|.|.|+|.|.|..|.....   ..+.+   ..+|.+. ..+.
T Consensus       243 ~--~~~~~~---~--------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~---~~l~V---~~~p~~~-~~~~  302 (382)
T 1cs6_A          243 K--LDGSQT---S--------KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ---GRIII---HAQPDWL-DVIT  302 (382)
T ss_dssp             E--CCSCCS---C--------CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEE---EEEEE---EEEEEEE-ECCC
T ss_pred             E--CCcccc---c--------EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEE---EEEEE---ecCCCcc-cCCC
Confidence            8  533322   0        122345689999999999999999999998863321   11222   2345553 3345


Q ss_pred             ceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+..    ..|.|.++...|.|.|+|.|.|..|....++.|
T Consensus       303 ~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  378 (382)
T 1cs6_A          303 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG----GELRFSKLVLEDSGMYQCVAENKHGTVYASAEL  378 (382)
T ss_dssp             CEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEET----TEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEEC----CEEEECcCCcccCEEEEEEEEeCCCeEEEEEEE
Confidence            6789999999999999999999999999999988777776642    289999999999999999999999999888888


Q ss_pred             EEe
Q psy12426        305 TVL  307 (616)
Q Consensus       305 ~v~  307 (616)
                      .|.
T Consensus       379 ~V~  381 (382)
T 1cs6_A          379 TVQ  381 (382)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            775

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.95  E-value=1.2e-26  Score=220.67  Aligned_cols=264  Identities=14%  Similarity=0.232  Sum_probs=196.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.+... |.++.+.+|+.+.|.|.+.|.|.|.|+|+|++..+...+.|.....                          
T Consensus         5 pP~~~~~-p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--------------------------   57 (284)
T 2rik_A            5 PPFFDLK-PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV--------------------------   57 (284)
T ss_dssp             CCEEEEC-CCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEE--------------------------
T ss_pred             CCEEEcc-ccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEc--------------------------
Confidence            5777644 8899999999999999999999999999999999887777755431                          


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCc----ceeecCCC-------ceee----eecCcccccEEEE
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP----HIARAKKG-------KCYH----LVGTLLKDSIYEQ  145 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~----~~~~~~~p-------~~~~----~~g~p~~~~~~~~  145 (616)
                        .....|.|.++...|.|.|+|.|.|..|..........    .......+       ..+.    ..|.|.+.+.|++
T Consensus        58 --~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~  135 (284)
T 2rik_A           58 --ENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK  135 (284)
T ss_dssp             --TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEE
T ss_pred             --CCEEEEEEecCCcccCEEEEEEEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEE
Confidence              12468999999999999999999998886432210000    00000011       0111    2278888999998


Q ss_pred             eeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcc
Q psy12426        146 LKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSD  225 (616)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~  225 (616)
                        ++..+.   .......  ........|.|.++...|.|.|+|.|.|..|....+   ..+.+   ..+|.+. ..+..
T Consensus       136 --~~~~~~---~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~---~~l~V---~~~p~~~-~~~~~  201 (284)
T 2rik_A          136 --DETEIQ---ESSKFRM--SFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS---TSLKV---KEPPVFR-KKPHP  201 (284)
T ss_dssp             --TTEECC---CSSSEEE--EEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEE---EEEEE---ECCCBCC-SCCCC
T ss_pred             --CCEECc---CCCcEEE--EEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEE---EEEEE---ecCCcce-eCCCc
Confidence              533222   1122211  112344579999999999999999999988753321   11222   2456653 34566


Q ss_pred             eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..|.....+.|.
T Consensus       202 ~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  281 (284)
T 2rik_A          202 VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSIT  281 (284)
T ss_dssp             EEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEE
Confidence            78899999999999999999999999999999888888887777778999999999999999999999999988888887


Q ss_pred             Ee
Q psy12426        306 VL  307 (616)
Q Consensus       306 v~  307 (616)
                      |.
T Consensus       282 V~  283 (284)
T 2rik_A          282 LK  283 (284)
T ss_dssp             EC
T ss_pred             Ec
Confidence            65

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.95  E-value=4e-25  Score=232.91  Aligned_cols=377  Identities=10%  Similarity=0.025  Sum_probs=236.4

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCC---eeeeeeCCee---------------------------------eee-----
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVP---HVDWRAGGNP---------------------------------LNL-----   45 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p---~v~W~~~~~~---------------------------------l~~-----   45 (616)
                      ..|+++.+.+|+.|.|.|.+.|.|.|   .|.|+|++..                                 |.+     
T Consensus         5 ~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~   84 (585)
T 2ocw_A            5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   84 (585)
T ss_pred             cCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCc
Confidence            35889999999999999999998765   7999998742                                 212     


Q ss_pred             --ccceEEEeecCCCC------------------Cc------e--eEeee-ccCCccc----eeeccccCC---------
Q psy12426         46 --RPIWEKCAQTEGDT------------------PK------G--KVLDL-IEGNHPI----WEKCAQTEG---------   83 (616)
Q Consensus        46 --~G~Y~C~a~n~~~~------------------~~------~--~v~~~-~~~~~p~----w~~~~~~~~---------   83 (616)
                        +|.|+|.|.|..+.                  +.      +  ..+.| ..++.|.    |++.+....         
T Consensus        85 ~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~  164 (585)
T 2ocw_A           85 DDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGY  164 (585)
T ss_pred             ccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcc
Confidence              99999999988554                  10      1  12233 2323322    988764210         


Q ss_pred             -------------CC-----CceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceee--------e---e
Q psy12426         84 -------------DT-----PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYH--------L---V  134 (616)
Q Consensus        84 -------------~~-----~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~--------~---~  134 (616)
                                   ..     ..|.|.++...|.|.|+|.|.|..|.....  ..+ .+....|..+.        +   +
T Consensus       165 ~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~--~~l-~V~~~~p~~~~~~~G~~v~l~C~~  241 (585)
T 2ocw_A          165 VNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKN--ADL-QVLKPEPELVYEDLRGSVTFHCAL  241 (585)
T ss_pred             cCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccce--EEE-EEccCCCceeEEcCCCcEEEEEEc
Confidence                         01     169999999999999999999988875443  211 12222232221        1   2


Q ss_pred             cCcc---cccEEEEeeccCc-cccccc---------CCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCC
Q psy12426        135 GTLL---KDSIYEQLKRSGL-FDQFHL---------CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  201 (616)
Q Consensus       135 g~p~---~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s  201 (616)
                      +.+.   ..+.|+.  .+|. .+....         .+..........+...|.|.++...|.|.|+|.|.|. |....+
T Consensus       242 ~~~~~~~~~~~w~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~  318 (585)
T 2ocw_A          242 GPEVANVAKFLCRQ--SSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEG  318 (585)
T ss_pred             CCCCCCceEEEEEe--CCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCcccc
Confidence            4444   5667763  2331 000000         1111111111122237999999999999999999995 433221


Q ss_pred             CCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCcee----EEEE--CCe--eecc---------cCcEE
Q psy12426        202 DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK----EWLC--NDI--TIIS---------KDRFK  264 (616)
Q Consensus       202 ~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~----~W~~--~~~--~~~~---------~~~~~  264 (616)
                      .....+.+.. ..+|.+ ...+....+.+|+.+.|.|.+.+.|.+.+    .|++  ++.  .+..         ..++.
T Consensus       319 ~~~~~~~l~V-~~~p~~-~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~  396 (585)
T 2ocw_A          319 SPIQAWQLFV-NEESTI-PRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLS  396 (585)
T ss_pred             CceeeEEEEE-eccccc-ccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEE
Confidence            1111122211 234555 34457788999999999999999999877    7999  876  4432         23444


Q ss_pred             EEec--CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCce
Q psy12426        265 IVND--DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI  342 (616)
Q Consensus       265 ~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i  342 (616)
                      +...  .+...|.|.++...|.|.|+|.| |..|.....+.|.+...|.....+.......+..+.|.|.......+.+.
T Consensus       397 ~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~  475 (585)
T 2ocw_A          397 LLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEK  475 (585)
T ss_pred             EeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCcc
Confidence            4432  23345999999999999999999 88888888888888764333222334556678889999986433222233


Q ss_pred             EEEEEEEEeCCCCC-----------EEEcc-ccccceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426        343 LHYVVEKMDMETGR-----------WVPMG-DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       343 ~~y~v~~~~~~~~~-----------~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~  394 (616)
                      .  .+.|...+...           ..... ......+.|.++...+.+.|+|.|.|..|.+..
T Consensus       476 ~--~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  537 (585)
T 2ocw_A          476 Y--WCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGET  537 (585)
T ss_pred             E--EEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEE
Confidence            3  33333221110           11111 122357999999999999999999999986543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.95  E-value=1e-26  Score=233.20  Aligned_cols=337  Identities=14%  Similarity=0.153  Sum_probs=217.8

Q ss_pred             CCCCCceEecCCCeEEEEEEEee-ecCCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccccC
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIG-EPVPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      ...|.++.+.+|+.|.|.|.+.+ .|.|.|+|+|+|..+..  .+++..                               
T Consensus        25 ~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~-------------------------------   73 (403)
T 3laf_A           25 VSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQ-------------------------------   73 (403)
T ss_dssp             EECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEE-------------------------------
T ss_pred             EeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEE-------------------------------
Confidence            35699999999999999999876 78899999999998863  222211                               


Q ss_pred             CCCCceEecCc-----ccCCeEEEEEEEEcCCCCCCCCCCCCcc----eeecCCCceee------------eecCccccc
Q psy12426         83 GDTPKGKVLDL-----IEGNQYEFRVLAVNKGGPGEPSDPTAPH----IARAKKGKCYH------------LVGTLLKDS  141 (616)
Q Consensus        83 ~~~~~l~i~~l-----~~~~~~~y~c~a~n~~g~~~~~~~~~~~----~~~~~~p~~~~------------~~g~p~~~~  141 (616)
                      .....+.|.++     ...|.|.|+|.|.|..+....+......    ......+..+.            ..|.|.+.+
T Consensus        74 ~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v  153 (403)
T 3laf_A           74 LPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTI  153 (403)
T ss_dssp             CTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEE
T ss_pred             ecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeE
Confidence            12345666666     7789999999999754433222111100    00011111111            227788899


Q ss_pred             EEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCC--Ccee
Q psy12426        142 IYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVS--PYIN  219 (616)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~--P~~~  219 (616)
                      .|++  ++..+.......   ..  .......|.|.++..+|.|.|+|.|.|..|......  ..+.+...+..  +...
T Consensus       154 ~W~~--~~~~~~~~~~~~---~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~--~~l~v~~~p~~~~~~~~  224 (403)
T 3laf_A          154 HWQK--NQQDLNPIPGDS---RV--VVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNE--AEVRILSDPGLHRQLYF  224 (403)
T ss_dssp             EEEE--SSSBCCCCTTCC---SE--EECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCC--EEEEEECCCCCCEEEEE
T ss_pred             EEEE--CCEeccccCCce---EE--EEcCCceEEEcccccccCEEEEEEEEcCCCceeccc--eeEEEecCCCcccCceE
Confidence            9999  533322101111   11  112344799999999999999999999876533222  12222221111  1111


Q ss_pred             ccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC-cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       220 ~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      ...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... ++.....   ..|.|.++...|.|.|+|.|.|..|..
T Consensus       225 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~  301 (403)
T 3laf_A          225 LQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGG---SNLLISNVTDDDSGTYTCVVTYKNENI  301 (403)
T ss_dssp             EECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETT---TEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             ecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCc---cEEEEeCCCHHHCEEEEEEEEcCCCce
Confidence            344566788999999999999999999999999998876443 3333322   389999999999999999999999988


Q ss_pred             eeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC----CCEEEccccccceEEecccc
Q psy12426        299 KGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET----GRWVPMGDVSGTYTRAENLI  374 (616)
Q Consensus       299 ~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~----~~~~~~~~~~~~~~~i~~L~  374 (616)
                      .....+.+..+|.....+.......+..+.|.|......    ...  +.|...+.    ......  .....+.|.++.
T Consensus       302 ~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p----~p~--v~W~~~g~~~~~~~~~~~--~~~~~L~i~~v~  373 (403)
T 3laf_A          302 SASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKP----VPT--VNWMKNGDVVIPSDYFQI--VGGSNLRILGVV  373 (403)
T ss_dssp             EEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEES----CCE--EEEEETTEECCCSSSEEE--ETTTEEEESSCC
T ss_pred             EEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeecc----CCE--EEEEECCEECCCCCcEEE--ecCccEEEeccc
Confidence            888888887766433222223445567788888753221    112  23322111    010010  123568899999


Q ss_pred             CCCeEEEEEEEEecCcCCC
Q psy12426        375 EGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       375 ~~~~y~~~v~a~n~~g~~~  393 (616)
                      ..+.+.|+|.|.|..|...
T Consensus       374 ~~d~G~Y~C~a~N~~G~~~  392 (403)
T 3laf_A          374 KSDEGFYQCVAENEAGNAQ  392 (403)
T ss_dssp             GGGCEEEEEEEEETTEEEE
T ss_pred             cccCEEEEEEEEcCCceEE
Confidence            9999999999999998754

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=249.25  Aligned_cols=435  Identities=18%  Similarity=0.165  Sum_probs=272.6

Q ss_pred             cCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEec-Cc
Q psy12426         15 SAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVL-DL   93 (616)
Q Consensus        15 ~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~-~l   93 (616)
                      .++....|+|...+.....++|......-. ...|........    .....|           ........++.|. ++
T Consensus       102 pP~~P~nl~c~~~~~~~~~~~W~~~~~~~~-~~~y~l~~~~~~----~~~~~c-----------~~~~~~~~~c~~~~~l  165 (589)
T 3l5h_A          102 PPEKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLKSEWAT----HKFADC-----------KAKRDTPTSCTVDYST  165 (589)
T ss_dssp             CCCCCEEEEEEEETTSCEEEEEECCSCCSS-CEEEEECCBCSS----SBCCCE-----------ECBTTBSSCCBCCSCC
T ss_pred             CCCCCEeeEEEECCCceEEEEECCCCcCCc-CceEEEEEEEcC----CCcccC-----------CCCCCCcEEEEECCCC
Confidence            345677899998877777899987543211 123333211110    000011           0011123455566 78


Q ss_pred             ccCCeEEEEEEEEcCCCCCCCCCC--CCcceeecCCCceeee--e-----------------cCcccccEEEEeeccCcc
Q psy12426         94 IEGNQYEFRVLAVNKGGPGEPSDP--TAPHIARAKKGKCYHL--V-----------------GTLLKDSIYEQLKRSGLF  152 (616)
Q Consensus        94 ~~~~~~~y~c~a~n~~g~~~~~~~--~~~~~~~~~~p~~~~~--~-----------------g~p~~~~~~~~~~~~~~~  152 (616)
                      .+...|.|+|.|.|..|.+.+...  .....+...+|.++.+  .                 +.++..|.+++  +    
T Consensus       166 ~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~~--~----  239 (589)
T 3l5h_A          166 VYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQY--R----  239 (589)
T ss_dssp             CSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGGTSCEEEEEEE--E----
T ss_pred             chheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCCeeeEEEEEEE--C----
Confidence            899999999999999998644311  1112234555655443  1                 34556677777  3    


Q ss_pred             cccccCCCceEecc--cCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceE-E-
Q psy12426        153 DQFHLCPIWEKCAQ--TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIK-V-  228 (616)
Q Consensus       153 ~~~~~~~~~~~~~~--~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~-v-  228 (616)
                      .  .....|.....  .......+.|.+|.++..|.|++.|.|..|.+..+.++..+........|..   .+.... + 
T Consensus       240 ~--~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~~~~P~~---~p~~~~~v~  314 (589)
T 3l5h_A          240 T--KDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSK---APSFWYKID  314 (589)
T ss_dssp             E--TTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCCCCCCCS---CCCEEEECC
T ss_pred             C--CCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccCccCCCC---CCcEEEEee
Confidence            1  23345665422  2345678999999999999999999999998877766665555544443421   111111 1 


Q ss_pred             ----EcCCeEEEEEEEee--ec---Cc--eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        229 ----RAGSNFEFDINVIG--EP---IP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       229 ----~~g~~~~l~c~~~~--~p---~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                          .....+.+.+....  ..   ..  .+.|...+...   .  .  .......+.+  +.+...|.+++.|.|..|.
T Consensus       315 ~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~~---~--~--~~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~  385 (589)
T 3l5h_A          315 PSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHL---Q--N--YTVNATKLTV--NLTNDRYLATLTVRNLVGK  385 (589)
T ss_dssp             SCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSCC---C--B--CCCSSSCCEE--CCCSSCCCEEEEEEBTTBC
T ss_pred             cCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCCc---e--e--eccCCceEEE--EeCCCCEEEEEEEEeCCcc
Confidence                11234555443210  00   01  22332222110   0  0  1111223333  6688999999999999887


Q ss_pred             ceeeEEEEEecC----CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-----CCEEEccccccceE
Q psy12426        298 DKGTAKVTVLDI----PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-----GRWVPMGDVSGTYT  368 (616)
Q Consensus       298 ~~~~~~l~v~~~----p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-----~~~~~~~~~~~~~~  368 (616)
                      +..+.. .+...    |.++.. +.+.. ..+++.|+|.++..    .+.+|.|+++....     ..|..........+
T Consensus       386 ~~~s~~-~~~~~~~~~~~p~~~-l~~~~-~~~si~l~W~~p~~----~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (589)
T 3l5h_A          386 SDAAVL-TIPACDFQATHPVMD-LKAFP-KDNMLWVEWTTPRE----SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTY  458 (589)
T ss_dssp             CCCCCC-CCCCTTCCCCSCCCS-CEEEE-CSSSEEEECCCCSS----CCSCBCCEEEEECSSSCCCEEECCBCSSCCEEE
T ss_pred             CCCeEE-EeecccccCCCCcce-EEEEE-CCCeEEEEEECCCC----CccEEEEEEEECCCCCCCccCcEEeeCCcceEE
Confidence            755432 22222    222222 44443 36899999997643    67889999886543     23444444445567


Q ss_pred             EeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCC-CCCCCcceeEEEE
Q psy12426        369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIE  447 (616)
Q Consensus       369 ~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~  447 (616)
                      .+.+|.+++.|.|+|.|.|..|.+..+    .+...+....|.+|.++.+...+.+++.|+|.+|. ...++.|.+|.|+
T Consensus       459 ~~~~L~p~t~Y~~~V~A~~~~g~g~~~----~~~~~t~~~~P~~pp~l~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~  534 (589)
T 3l5h_A          459 LRGNLAESKCYLITVTPVYADGPGSPE----SIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIF  534 (589)
T ss_dssp             CCSCCCSSSEEEEEECBEETTEECCCE----EEEEESSCCCCSSCCCCCEECCCSSCBEEBCCCCCHHHHCSCEEEEEEC
T ss_pred             ehhccccCcEEEEEEEEEeCCcccCCE----EEEEEeccCCCCCCCeEEEeecccceEEEEecCCCHHHcCccceeEEEE
Confidence            779999999999999999999987653    23444566778788889999899999999999753 3444579999999


Q ss_pred             EeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCC
Q psy12426        448 KKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA  499 (616)
Q Consensus       448 ~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~  499 (616)
                      |+..++ .|  ..........++|.+|.|++.|.|+|+|.|..| |.+|....
T Consensus       535 ~~~~~~~~~--~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-~~~S~~~~  584 (589)
T 3l5h_A          535 YRTIIGNET--AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFT  584 (589)
T ss_dssp             CBCSSCCCC--CEEECTTCCBCCBCSCCSSCCEECCEEEEETTE-EEECCCCE
T ss_pred             EEeCCCCeE--EEEeCCcccEEEecCCCCCCEEEEEEEEEeCCC-CCCCCCeE
Confidence            988776 44  234566788999999999999999999999999 87776543

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=4.3e-26  Score=228.03  Aligned_cols=348  Identities=14%  Similarity=0.126  Sum_probs=224.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEee-ecCCeeeeeeCCeeeeeccc-eEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIG-EPVPHVDWRAGGNPLNLRPI-WEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~-Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      ||.|... |.++.+.+|+.+.|.|.+.| .|.|.|+|+|+|..+..... +.-                           
T Consensus         6 ~P~~~~~-p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~---------------------------   57 (395)
T 1bih_A            6 YPVLKDQ-PAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL---------------------------   57 (395)
T ss_dssp             CCEECCC-CSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE---------------------------
T ss_pred             CCEeecC-CCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEE---------------------------
Confidence            6888755 88999999999999999998 99999999999998874221 110                           


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCccee-ecCCC---c--------eee----e-ecCccccc
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA-RAKKG---K--------CYH----L-VGTLLKDS  141 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~-~~~~p---~--------~~~----~-~g~p~~~~  141 (616)
                         .....+|.|.++...|.|.|+|.|.|..|...... ...... ...++   .        .+.    + .|.|.+.+
T Consensus        58 ---~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~-~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v  133 (395)
T 1bih_A           58 ---RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRV-ISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLI  133 (395)
T ss_dssp             ---CTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCC-EEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEE
T ss_pred             ---ecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEE-EEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeE
Confidence               12356899999999999999999999888654221 111111 11111   1        111    1 16678899


Q ss_pred             EEEEeecc-CcccccccCCCceEecccCCCCCeEEeecccCCCeE---EEEEEEEeCCCCCCCCCCCCCEEeccc-----
Q psy12426        142 IYEQLKRS-GLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQY---EFRVLAVNKGGPGEPSDPTAPHIARAK-----  212 (616)
Q Consensus       142 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~---~y~c~a~n~~g~~~~s~~~~~~~~~~~-----  212 (616)
                      .|++  ++ +... ......+... ........|.|.++...|.|   .|+|.|.|..|..........+.....     
T Consensus       134 ~W~~--~~~~~~~-~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~  209 (395)
T 1bih_A          134 TWKK--RLSGADP-NADVTDFDRR-ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGY  209 (395)
T ss_dssp             EEEE--EETTSCG-GGCCCCCCTT-EEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCC
T ss_pred             EEEe--cCCCcCc-cccccccccc-EEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccc
Confidence            9999  42 1111 0000000000 01122347999999999999   999999998887432110000000000     


Q ss_pred             --cCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC--cEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        213 --KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       213 --~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                        ..+|.+   .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....  ++..........|.|.++...|.|.|+
T Consensus       210 ~~~~~p~~---~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  286 (395)
T 1bih_A          210 KGEPVPQY---VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYT  286 (395)
T ss_dssp             CCCCEEEE---ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEE
T ss_pred             cCCcCcee---cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEE
Confidence              012322   2456789999999999999999999999999998876543  333222233458999999999999999


Q ss_pred             EEEEcCCCCcee-eEEEEEecCCCCCCCCcc-ceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccc
Q psy12426        289 LAVKNSWGTDKG-TAKVTVLDIPSPPEGPLK-PSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT  366 (616)
Q Consensus       289 c~a~n~~g~~~~-~~~l~v~~~p~~p~~~~~-~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~  366 (616)
                      |.|.|..|.... .+.|.|..+|.....+.. .....+..+.|.|....... ..+.+|. ...........    ....
T Consensus       287 C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~v~W~~-~g~~~~~~~~~----~~~~  360 (395)
T 1bih_A          287 CEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPA-PNVVWSH-NAKPLSGGRAT----VTDS  360 (395)
T ss_dssp             EEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESC-CCCEEEE-TTEECCSSSEE----EETT
T ss_pred             EEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccC-CeeEEEE-CCEECCCCceE----EECC
Confidence            999999988655 788888876654333222 34456778889887532211 1122111 00011111111    1123


Q ss_pred             eEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        367 YTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       367 ~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      .+.|.++...+.+.|+|.|.|..|...
T Consensus       361 ~L~i~~~~~~d~G~Y~C~a~N~~G~~~  387 (395)
T 1bih_A          361 GLVIKGVKNGDKGYYGCRATNEHGDKY  387 (395)
T ss_dssp             EEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             EEEEeeCCcccCEEEEEEEEccCCCce
Confidence            799999999999999999999998743

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.95  E-value=3.9e-27  Score=236.36  Aligned_cols=346  Identities=15%  Similarity=0.095  Sum_probs=224.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|...++.++.|.+|+.|.|.|.+.|+|.|.|+|+|+|..+.....+.-..                           
T Consensus        16 ~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~---------------------------   68 (404)
T 3p3y_A           16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSM---------------------------   68 (404)
T ss_dssp             CCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBC---------------------------
T ss_pred             CCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceE---------------------------
Confidence            68888777889999999999999999999999999999999876322111000                           


Q ss_pred             cCCCCCceEec----CcccCCeEEEEEEEEcCCCCCCCCCCCCc---------------ceeecCCCceee--e-ecCcc
Q psy12426         81 TEGDTPKGKVL----DLIEGNQYEFRVLAVNKGGPGEPSDPTAP---------------HIARAKKGKCYH--L-VGTLL  138 (616)
Q Consensus        81 ~~~~~~~l~i~----~l~~~~~~~y~c~a~n~~g~~~~~~~~~~---------------~~~~~~~p~~~~--~-~g~p~  138 (616)
                       ......|.|.    ++...|.|.|+|.|.|..|...... ...               ..+....+..+.  . .|.|.
T Consensus        69 -~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~-~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~  146 (404)
T 3p3y_A           69 -RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR-IRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPS  146 (404)
T ss_dssp             -CSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEE-EEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSC
T ss_pred             -ecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeee-EEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCC
Confidence             1123344443    7888999999999999888653210 000               000001111111  1 26788


Q ss_pred             cccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCC-eEEEEEEEEeCCCCCCCCCCCCCEEecc----cc
Q psy12426        139 KDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGN-QYEFRVLAVNKGGPGEPSDPTAPHIARA----KK  213 (616)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~-~~~y~c~a~n~~g~~~~s~~~~~~~~~~----~~  213 (616)
                      +.+.|++  +++..   ........    ......|.|.++...| .|.|+|.|.|..|..........+.+..    ..
T Consensus       147 ~~v~W~~--~~~~~---~~~~~~~~----~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~  217 (404)
T 3p3y_A          147 PVIFWMS--SSMEP---ITQDKRVS----QGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAE  217 (404)
T ss_dssp             CEEEEEC--TTSCB---CCCCSSEE----ECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCC
T ss_pred             CeEEEeC--CCccc---cCCCCcEE----EcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccc
Confidence            8899988  53211   11111111    1234479999999999 5999999999887643222223333322    12


Q ss_pred             CCCceecc--CCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEE
Q psy12426        214 VSPYINRD--QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       214 ~~P~~~~~--~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      .+|.+...  ......+..|+.+.|.|.+.+.|.+.+.|++++..+..... ....  ....|.|.++...|.|.|+|.|
T Consensus       218 ~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~-~~~~--~~~~L~i~~~~~~d~G~Y~C~a  294 (404)
T 3p3y_A          218 RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KFEN--FNKALRITNVSEEDSGEYFCLA  294 (404)
T ss_dssp             CCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTE-EEEG--GGTEEEESSCCGGGCEEEEEEE
T ss_pred             cCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcc-cccc--cCceEEEccCCHhHCEEEEEEE
Confidence            24444221  12356788999999999999999999999999988765443 2222  2348999999999999999999


Q ss_pred             EcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCC----CEEEccccccce
Q psy12426        292 KNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG----RWVPMGDVSGTY  367 (616)
Q Consensus       292 ~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~----~~~~~~~~~~~~  367 (616)
                      .|..|.......+.+..+|.....+.......+..+.|.|......    ...  +.|...+..    ............
T Consensus       295 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p----~p~--v~W~~~g~~~~~~~~~~~~~~~~~~  368 (404)
T 3p3y_A          295 SNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNP----KPT--VQWMVNGEPLQSAPPNPNREVAGDT  368 (404)
T ss_dssp             ECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEES----CCE--EEEEETTEEGGGSCCCTTEEEETTE
T ss_pred             EeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccC----CCc--eEEEECCEecCCCCCCceEEecCCE
Confidence            9999988888888888766433322234445577888998753221    112  223221110    000000012347


Q ss_pred             EEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        368 TRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       368 ~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      +.|.++...+.+.|+|.|.|..|...
T Consensus       369 L~i~~v~~~d~G~Y~C~a~N~~G~~~  394 (404)
T 3p3y_A          369 IIFRDTQISSRAVYQCNTSNEHGYLL  394 (404)
T ss_dssp             EEESSCCSSCCCEEEEEEEETTEEEE
T ss_pred             EEEeecCHHHCEEEEEEEEeCCCcEE
Confidence            89999999999999999999998754

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.94  E-value=2.3e-26  Score=229.31  Aligned_cols=342  Identities=14%  Similarity=0.094  Sum_probs=216.4

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeee-CCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRA-GGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~-~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||.+..++...+.+.+|+.+.|.|.+.|.|.|.|+|+| ||..+.....+.-                            
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~----------------------------   54 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ----------------------------   54 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBE----------------------------
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceE----------------------------
Confidence            57888775556778999999999999999999999999 7877763221111                            


Q ss_pred             ccCCCCCceEecCcccCC------eEEEEEEEEcCCCCCCCCCCCCcce-eec---CCCc--------eeee----ecC-
Q psy12426         80 QTEGDTPKGKVLDLIEGN------QYEFRVLAVNKGGPGEPSDPTAPHI-ARA---KKGK--------CYHL----VGT-  136 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~------~~~y~c~a~n~~g~~~~~~~~~~~~-~~~---~~p~--------~~~~----~g~-  136 (616)
                        ....++|.|.++...|      .|.|+|.|.|..|...... ..... ...   ..+.        .+.+    .+. 
T Consensus        55 --~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~-~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~  131 (388)
T 2v5m_A           55 --ISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRD-VHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFV  131 (388)
T ss_dssp             --ECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCC-EEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTT
T ss_pred             --EcCCceEEecccChhhccccccCceEEEEEEccCCeEEecc-eEEEEccccccccCccceeeecCCcEEEEEECcCCC
Confidence              1124679999999887      9999999999988642211 11100 000   0011        1111    132 


Q ss_pred             --cccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCe-EEEEEEEEeCCCCCC-CCCCCCCEEeccc
Q psy12426        137 --LLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQ-YEFRVLAVNKGGPGE-PSDPTAPHIARAK  212 (616)
Q Consensus       137 --p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~-~~y~c~a~n~~g~~~-~s~~~~~~~~~~~  212 (616)
                        +.+.+.|++  +++.+.  ........ .........|.|.+++.+|. |.|+|.|.|..+... .+.....+.+...
T Consensus       132 ~~~~~~v~W~~--~~~~~~--~~~~~~~~-~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~  206 (388)
T 2v5m_A          132 ADFVEVVSWHT--DEEENY--FPGAEYDG-KYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEP  206 (388)
T ss_dssp             TTTEEEEEEEE--TTCCEE--CSSSCBTT-TEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECC
T ss_pred             CCCcceEEEEe--CCCccc--ccccCCCC-cEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecC
Confidence              336799998  533221  00000000 00112234799999999999 999999999865322 1211112332211


Q ss_pred             --cCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeee------cccCcEEEEecCCceEEEecCCCCCCc
Q psy12426        213 --KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI------ISKDRFKIVNDDKSTKLKVFDSKRGDS  284 (616)
Q Consensus       213 --~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~------~~~~~~~~~~~~~~~~l~i~~l~~~~~  284 (616)
                        ...|.+.........+..|+.+.|.|.+.+.|.+.+.|++++..+      ....++...    ...|.|.++...|.
T Consensus       207 ~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~  282 (388)
T 2v5m_A          207 ISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV----SGTLIIKDAVVEDS  282 (388)
T ss_dssp             CSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEE----TTEEEESSCCGGGC
T ss_pred             CcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecc----cCEEEECcCCHHHC
Confidence              112222222234467889999999999999999999999975332      122333322    23899999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccc
Q psy12426        285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS  364 (616)
Q Consensus       285 g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~  364 (616)
                      |.|+|.|.|..|.......|.+..+|.....+.......+..+.|.|......    ...  +.|...+.    .. ...
T Consensus       283 G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p----~p~--i~W~~~g~----~i-~~~  351 (388)
T 2v5m_A          283 GKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNP----IKT--VSWMKDGK----AI-GHS  351 (388)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEEC----CCE--EEEEETTE----EC-SCC
T ss_pred             eEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEecccc----CCe--EEEEECCE----EC-ccC
Confidence            99999999999988888888887765432222223445577888998753221    112  33322211    01 123


Q ss_pred             cceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        365 GTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       365 ~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ...+.|.++...+.+.|+|.|.|..|...
T Consensus       352 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  380 (388)
T 2v5m_A          352 ESVLRIESVKKEDKGMYQCFVRNDRESAE  380 (388)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CCEEEEecCChhhCEEEEEEEEcCCCcEE
Confidence            46799999999999999999999998643

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.94  E-value=2.4e-26  Score=238.61  Aligned_cols=294  Identities=12%  Similarity=0.068  Sum_probs=193.9

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeee---------e-------ccceEEEeecCCCC-----
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN---------L-------RPIWEKCAQTEGDT-----   59 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~---------~-------~G~Y~C~a~n~~~~-----   59 (616)
                      ||+|... +.++.+.+|+.++|.|.+.|    .|+|+|++..+.         +       +|.|+|.|.|  |.     
T Consensus        36 pP~i~~~-~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g~~~~~~  108 (524)
T 2ec8_A           36 PPSIHPG-KSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKH--GLSNSIY  108 (524)
T ss_dssp             CCEEESC-CSEEECCTTSCEEEEEECTT----EEEEEEESSSCCEEECSSEEEESSCCSTTCEEEEEEETT--SCEEEEE
T ss_pred             CCccCCC-CceEEEeCCCeEEEEEeCCc----eEEEcCCCccccccCccceEEEcccchhhCEEEEEeecC--CcceEEE
Confidence            6777754 67899999999999999887    899999987541         1       9999999999  32     


Q ss_pred             -----Cc-------------e--eEeeeccCCcc-c---eee-ccccC--------CCCCceEecCcccCCeE-EEEEEE
Q psy12426         60 -----PK-------------G--KVLDLIEGNHP-I---WEK-CAQTE--------GDTPKGKVLDLIEGNQY-EFRVLA  105 (616)
Q Consensus        60 -----~~-------------~--~v~~~~~~~~p-~---w~~-~~~~~--------~~~~~l~i~~l~~~~~~-~y~c~a  105 (616)
                           |.             +  ..+.|...|.| .   |++ ++...        .....|.|.++...|.| .|+|.|
T Consensus       109 l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a  188 (524)
T 2ec8_A          109 VFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSV  188 (524)
T ss_dssp             EECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEE
T ss_pred             EEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEE
Confidence                 00             0  12233222444 2   977 55543        23467899999999999 999999


Q ss_pred             EcCCCCCCCCCC-CCcc------eeecCCCceee------------eecCcccc-cEEEEeeccCcccccccCCCceEec
Q psy12426        106 VNKGGPGEPSDP-TAPH------IARAKKGKCYH------------LVGTLLKD-SIYEQLKRSGLFDQFHLCPIWEKCA  165 (616)
Q Consensus       106 ~n~~g~~~~~~~-~~~~------~~~~~~p~~~~------------~~g~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  165 (616)
                      .|..|....... ..+.      ......|....            ..|.|.+. +.|++  ++..++  ..........
T Consensus       189 ~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~--~~~~~~--~~~~~~~~~~  264 (524)
T 2ec8_A          189 DQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKR--ENSQTK--LQEKYNSWHH  264 (524)
T ss_dssp             C----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEE--TTCSCC--CCEEEEEEEC
T ss_pred             EECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEe--CCCCCc--cccccccccc
Confidence            998775543110 1110      00001111111            22777776 99999  533210  0000000000


Q ss_pred             c--cCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceecc--CCcceEEEcCCeEEEEEEEe
Q psy12426        166 Q--TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD--QLSDIKVRAGSNFEFDINVI  241 (616)
Q Consensus       166 ~--~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~--~~~~~~v~~g~~~~l~c~~~  241 (616)
                      .  .......|.|.++..+|.|.|+|.|.|..|.....   ..+.+   ..+|.+...  ......+..|+.+.|.|.+.
T Consensus       265 ~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~---~~l~V---~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~  338 (524)
T 2ec8_A          265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT---TTLEV---VDKGFINIFPMINTTVFVNDGENVDLIVEYE  338 (524)
T ss_dssp             SSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEE---EEEEE---ESSCEEEEEESSCSEEEECTTCCEEEEEEEE
T ss_pred             cCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEE---EEEEE---eccCceEeecCCCceEEEcCCCcEEEEEEEe
Confidence            0  11224589999999999999999999988864321   12222   245555322  22468899999999999999


Q ss_pred             eecCce-eEEEECCeeecccC-cEEEEecC----CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy12426        242 GEPIPT-KEWLCNDITIISKD-RFKIVNDD----KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS  311 (616)
Q Consensus       242 ~~p~~~-~~W~~~~~~~~~~~-~~~~~~~~----~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~  311 (616)
                      +.|.+. +.|++++..+.... ++.....+    ....|.|.++...|.|.|+|.|.|..|....++.|.|..+|.
T Consensus       339 g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~  414 (524)
T 2ec8_A          339 AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPE  414 (524)
T ss_dssp             EESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEE
T ss_pred             ecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCe
Confidence            999999 99999998876554 33322222    246899999999999999999999999988888888876654

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.94  E-value=1.3e-24  Score=215.29  Aligned_cols=266  Identities=19%  Similarity=0.294  Sum_probs=202.5

Q ss_pred             ecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEE
Q psy12426        267 NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYV  346 (616)
Q Consensus       267 ~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~  346 (616)
                      .......+.|.+|.+...|.|++.|.|..|.+...........| +|.+ +.+......++.|+|.++.   +..+.+|.
T Consensus        54 ~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~p-~p~~-l~~~~~~~~si~l~W~~~~---~~~i~~Y~  128 (375)
T 3t1w_A           54 VHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVP-QLTD-LSFVDITDSSIGLRWTPLN---SSTIIGYR  128 (375)
T ss_dssp             EETTCCEEEECCCCTTCCEEEEEEEEETTEECCCEEEEECCCCC-CCSC-CEEECCCSSEEEEECCCCC---CTTEEEEE
T ss_pred             cCCCccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEEeeEcCCCC-CCce-EEEEecCCCeEEEEEECCC---CCCceEEE
Confidence            33455689999999999999999999987765444333333344 3544 6777788899999999763   34799999


Q ss_pred             EEEEeCCCCC-E-EEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCC
Q psy12426        347 VEKMDMETGR-W-VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD  424 (616)
Q Consensus       347 v~~~~~~~~~-~-~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~  424 (616)
                      |+++..+... + ..........+.+.+|.+++.|.|+|.|.|..|.+.++.    ....+   .|.+|.++.+...+.+
T Consensus       129 v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~----~~~~t---~~~~p~~l~~~~~~~~  201 (375)
T 3t1w_A          129 ITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTT----LTQQT---AVPPPTDLRFTNIGPD  201 (375)
T ss_dssp             EEEEESSSCCSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEE----EEEEC---CCCCCEEEEEESCCSS
T ss_pred             EEEEECCCCCceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCee----eeeec---CCCCCceeEEEecccC
Confidence            9998755432 2 223335567899999999999999999999999877642    22222   4457888998888999


Q ss_pred             eEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEE
Q psy12426        425 HVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       425 ~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~  502 (616)
                      ++.|+|.+|.   ++.+.+|.|+|+..++  .|.. .........+++.+|.|++.|.|+|+|.|..|.|.++..    .
T Consensus       202 si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~----~  273 (375)
T 3t1w_A          202 TMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAE-LSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG----R  273 (375)
T ss_dssp             CEEEEEECCS---SCCCCEEEEEEEEGGGTTCCEE-EEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEE----E
T ss_pred             EEEEEEcCCC---CCCccEEEEEEEeCCCCCCcEE-EEcCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCceee----E
Confidence            9999999763   2458999999988764  3443 345566789999999999999999999999998764421    1


Q ss_pred             eccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCC
Q psy12426        503 CKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPIS  582 (616)
Q Consensus       503 ~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~  582 (616)
                      .                                                  .+.|.+|.++++...+.+++.|+|++|  
T Consensus       274 ~--------------------------------------------------~t~p~~P~~l~~~~~~~~sv~l~W~~p--  301 (375)
T 3t1w_A          274 Q--------------------------------------------------KTGLDSPTGIDFSDITANSFTVHWIAP--  301 (375)
T ss_dssp             E--------------------------------------------------ECCCCCCEEEEEESCCSSCEEEEEECC--
T ss_pred             E--------------------------------------------------ecCCCCCCccEeeeccCCEEEEEECCC--
Confidence            1                                                  145678888888888999999999998  


Q ss_pred             CCCCceeeeEEEEeecCC-CCeEEc
Q psy12426        583 NGGSAIKGYEVERRERTS-GRWIKI  606 (616)
Q Consensus       583 ~~~~~i~~Y~i~~~~~~~-~~w~~~  606 (616)
                        .+.+.+|+|.|+..++ +.|...
T Consensus       302 --~~~~~~Y~v~~~~~~~~~~~~~~  324 (375)
T 3t1w_A          302 --RATITGYRIRHHPEHFSGRPRED  324 (375)
T ss_dssp             --SSCCSEEEEEEEETTCCSSCEEE
T ss_pred             --CcceeeEEEEEEECCCCCcceeE
Confidence              3789999999998775 555443

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.94  E-value=4e-24  Score=226.91  Aligned_cols=211  Identities=16%  Similarity=0.223  Sum_probs=158.2

Q ss_pred             CcEEEEEEEEcCCCCceeeEEEEEecCCCCC-CCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-------
Q psy12426        283 DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP-EGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-------  354 (616)
Q Consensus       283 ~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p-~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-------  354 (616)
                      ..|.+.| +.|..|..-......+...|.+| .+ +.+.....+++.|+|.++.+.++..+. |.|+++...+       
T Consensus       134 c~g~~~C-c~n~cG~~C~~P~~~~~~~P~~P~~~-l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~V~~r~~~g~~~~~~~  210 (680)
T 1zlg_A          134 CSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKE-LRFTELQSGQLEVKWSSKFNISIEPVI-YVVQRRWNYGIHPSEDD  210 (680)
T ss_pred             CCCcccc-ccccccccccccceeeeccccccccc-ceEEeccCceEEEEEeCCCCCCCCCEE-EEEEEEECCCCCcCccc
Confidence            4566666 45555654222233356778888 55 788888999999999987655566777 9999987532       


Q ss_pred             -CCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEe--cCC---eEEE
Q psy12426        355 -GRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDW--GKD---HVDL  428 (616)
Q Consensus       355 -~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~--~~~---~v~l  428 (616)
                       ..|..........+.+.+|.+++.|.|+|.|.|..|.+..+..+..+.......+|.+|.++.+...  +.+   ++.|
T Consensus       211 ~~~w~~v~~~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~sv~l  290 (680)
T 1zlg_A          211 ATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTI  290 (680)
T ss_pred             cCceEEEEecCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCceEEEE
Confidence             5687776656678999999999999999999999995444433444443323367889999999888  788   9999


Q ss_pred             EecCCCCCCCCcceeEEEEEeeC-C----C---CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCC
Q psy12426        429 EWTPPKKDGGSPISQYIIEKKPK-Y----G---PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS  498 (616)
Q Consensus       429 ~W~~p~~~~~~~i~~Y~i~~~~~-~----~---~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~  498 (616)
                      +|.+|...+ ++|.+|.|+|+.. +    .   .|.. ..+.++...++|.+|.|++.|.|+|+|+|..|.|+++...
T Consensus       291 ~W~pP~~~~-g~i~~Y~V~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~  366 (680)
T 1zlg_A          291 VWDLPEEPD-IPVHHYKVFWSWMVSSKSLVPTKKKRR-KTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAK  366 (680)
T ss_pred             EecCCCCCC-CceeEEEEEEEecccccccCCccceEE-EEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCc
Confidence            999876544 5799999999822 1    1   3444 3445567899999999999999999999999999988763

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.94  E-value=1.6e-25  Score=214.97  Aligned_cols=268  Identities=18%  Similarity=0.209  Sum_probs=175.6

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|.. .|.++.+.+|+.+.|.|.+.|.|.|.|+|+|+|..+. .+.|......                         
T Consensus         6 ~P~~~~-~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~-~~~~~~~~~~-------------------------   58 (304)
T 2yd9_A            6 PPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVN-SQRFETIEFD-------------------------   58 (304)
T ss_dssp             CCEEEE-CCCCEEEETTSCEEEEEEEECSSCCEEEEC--------CTTEEEEEET-------------------------
T ss_pred             CCeeee-cCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECC-CCceEEEEec-------------------------
Confidence            677774 4889999999999999999999999999999999886 4454433211                         


Q ss_pred             cCCCCCceEecCccc-CCeEEEEEEEEcCCCCCCCCCCCCcce---------eecCCCce--------ee----eecCcc
Q psy12426         81 TEGDTPKGKVLDLIE-GNQYEFRVLAVNKGGPGEPSDPTAPHI---------ARAKKGKC--------YH----LVGTLL  138 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~-~~~~~y~c~a~n~~g~~~~~~~~~~~~---------~~~~~p~~--------~~----~~g~p~  138 (616)
                       ......|.|.++.. .|.|.|+|.|.|..|.........+..         .....|..        +.    ..|.|.
T Consensus        59 -~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~  137 (304)
T 2yd9_A           59 -ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD  137 (304)
T ss_dssp             -TTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSC
T ss_pred             -CCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCC
Confidence             11235799999997 999999999999988744331111000         00011111        11    227888


Q ss_pred             cccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCce
Q psy12426        139 KDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYI  218 (616)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~  218 (616)
                      +.+.|++  ++..+.   ..........  .....|.|.++..+|.|.|+|.|.|..|....+.  ..+.+.....+|.+
T Consensus       138 ~~v~W~k--~~~~~~---~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~--~~l~v~~~~~~P~~  208 (304)
T 2yd9_A          138 PEITWFK--DFLPVD---PSASNGRIKQ--LRSGALQIESSEETDQGKYECVATNSAGVRYSSP--ANLYVRVQNVAPRF  208 (304)
T ss_dssp             CEEEEEE--TTEECC---GGGGTTSEEE--CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCC--EEEEEECCCEEEEE
T ss_pred             CeEEEEE--CCEECc---CCCCcceEEe--CCCeEEEEccCCcccCEEEEEEEEeCCCCEEecc--EEEEEEeeccCCcE
Confidence            8999999  533322   1110001111  2234899999999999999999999988643221  12333333355666


Q ss_pred             eccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        219 NRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       219 ~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      .. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.    .....|.|.++  .|+|.|+|.|.|..|..
T Consensus       209 ~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~  281 (304)
T 2yd9_A          209 SI-LPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KDSANYTCVAMSSLGVI  281 (304)
T ss_dssp             EE-CCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC----BSEEEEEECSC--CSCEEEEEEEEETTEEE
T ss_pred             Ee-cCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc----CCcEEEEEccc--ccCEEEEEEEEeCCCcE
Confidence            43 3455678899999999999999999999999999886554321    23346777776  48999999999999999


Q ss_pred             eeeEEEEEecCCCC
Q psy12426        299 KGTAKVTVLDIPSP  312 (616)
Q Consensus       299 ~~~~~l~v~~~p~~  312 (616)
                      ...+.|.|...+..
T Consensus       282 ~~~~~l~V~~~~~~  295 (304)
T 2yd9_A          282 EAVAQITVKSLPKA  295 (304)
T ss_dssp             EEEEEEC-------
T ss_pred             EEEEEEEEecCccc
Confidence            88888888776543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.94  E-value=3.9e-26  Score=228.15  Aligned_cols=289  Identities=12%  Similarity=0.061  Sum_probs=172.8

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeee----------------e-------ccceEEEeecCCCCCce---
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN----------------L-------RPIWEKCAQTEGDTPKG---   62 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~----------------~-------~G~Y~C~a~n~~~~~~~---   62 (616)
                      +.++.|.+|++|.|.|.+.|.|.|.|.|++++..+.                +       +|.|+|.|.|..|....   
T Consensus        55 ~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~  134 (423)
T 3qs7_E           55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFT  134 (423)
T ss_dssp             -CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEE
T ss_pred             cccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEE
Confidence            558999999999999999999999999999886432                1       99999999999765110   


Q ss_pred             ----------------------eEeeeccCCccc----eeeccccCCC------CCceEecC-cccCCeEEEEEEEEcCC
Q psy12426         63 ----------------------KVLDLIEGNHPI----WEKCAQTEGD------TPKGKVLD-LIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        63 ----------------------~v~~~~~~~~p~----w~~~~~~~~~------~~~l~i~~-l~~~~~~~y~c~a~n~~  109 (616)
                                            ..+.|...|.|.    |++.+.....      ........ +...|.|.|+|.|.|..
T Consensus       135 l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~  214 (423)
T 3qs7_E          135 VSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNEL  214 (423)
T ss_dssp             EEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSS
T ss_pred             EEEecCccccccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCC
Confidence                                  112343346665    9987654211      01111111 25789999999999999


Q ss_pred             CCCCCCCC-CCcceeecCCCcee----------e--eec-CcccccEEEEeeccCcccccccCCCceEeccc----CCCC
Q psy12426        110 GPGEPSDP-TAPHIARAKKGKCY----------H--LVG-TLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQT----EGDT  171 (616)
Q Consensus       110 g~~~~~~~-~~~~~~~~~~p~~~----------~--~~g-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  171 (616)
                      |....... ......+...|.+.          .  ..| .|.+.+.|++  ++..+.   ...........    ....
T Consensus       215 G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k--~g~~l~---~~~~~~~~~~~~~~~~~~~  289 (423)
T 3qs7_E          215 GRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL--ENKALE---EGNYFEMSTYSTNRTMIRI  289 (423)
T ss_dssp             CEEEEECEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEE--SSSBCC---GGGEEEEEEEETTTEEEEE
T ss_pred             CCcceeeEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEE--CCEEcc---ccceeecccccCCceeEEE
Confidence            86543200 00000000111111          1  226 5668999999  543322   11001000000    1112


Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceec-cCCcceEEEcCCeEEEEEEEeeecCceeEE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR-DQLSDIKVRAGSNFEFDINVIGEPIPTKEW  250 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~-~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W  250 (616)
                      ..|.|.++..+|.|.|+|.|.|. .   ..  ...+.+   ..+|.+.. .....+.+.+|+.+.|.|.+.+.|.+.+.|
T Consensus       290 ~~L~I~~v~~~D~G~Y~C~A~N~-~---~~--~~~L~V---~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W  360 (423)
T 3qs7_E          290 LFAFVSSVARNDTGYYTCSSSKH-P---SQ--SALVTI---VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW  360 (423)
T ss_dssp             EEEEESSCCTTTCEEEEEEETTE-E---EE--EEEEEE---ESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEE
T ss_pred             EEEEEeecCHHHCEEEEEEEecC-C---Cc--eEEEEE---EeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEE
Confidence            36999999999999999999887 1   11  111222   23454432 222456678999999999999999999999


Q ss_pred             EECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCC
Q psy12426        251 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG  315 (616)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~  315 (616)
                      ++++..+....+..    .....+.+......|.|.|+|.|.|..|....++.|.+..+|.+|..
T Consensus       361 ~k~g~~l~~~~~~~----~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~~  421 (423)
T 3qs7_E          361 TFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHHH  421 (423)
T ss_dssp             EETTEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----------
T ss_pred             EECCEECCCccccc----cCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCccccc
Confidence            99999886442100    01112223456668999999999999999999999999998887764

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.94  E-value=4.3e-26  Score=233.97  Aligned_cols=285  Identities=13%  Similarity=0.088  Sum_probs=182.3

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeee----------------e-------ccceEEEeecCCCCCc----
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN----------------L-------RPIWEKCAQTEGDTPK----   61 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~----------------~-------~G~Y~C~a~n~~~~~~----   61 (616)
                      +..+.|.+|++++|.|.+.+.|...+.|++++..+.                +       +|.|+|.|.|..+...    
T Consensus        55 ~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~  134 (527)
T 3qs9_E           55 AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFT  134 (527)
T ss_dssp             -CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEE
T ss_pred             eeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEE
Confidence            338999999999999999999999999999887532                1       9999999999865410    


Q ss_pred             ------------e---------eEeeeccCCccc----eeeccccCC-----CCC--ceEecCcccCCeEEEEEEEEcCC
Q psy12426         62 ------------G---------KVLDLIEGNHPI----WEKCAQTEG-----DTP--KGKVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        62 ------------~---------~v~~~~~~~~p~----w~~~~~~~~-----~~~--~l~i~~l~~~~~~~y~c~a~n~~  109 (616)
                                  .         ..+.|...|.|.    |++.+....     ...  ......+.+.|.|.|+|.|.|..
T Consensus       135 v~v~~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~  214 (527)
T 3qs9_E          135 VSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNEL  214 (527)
T ss_dssp             EEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSS
T ss_pred             EEECCceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEEEEEEEeCC
Confidence                        0         112344446665    988765421     111  12233466889999999999999


Q ss_pred             CCCCCCCC-CCcceeecCCCcee----------e--ee-cCcccccEEEEeeccCcccccccCCCceEeccc----CCCC
Q psy12426        110 GPGEPSDP-TAPHIARAKKGKCY----------H--LV-GTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQT----EGDT  171 (616)
Q Consensus       110 g~~~~~~~-~~~~~~~~~~p~~~----------~--~~-g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  171 (616)
                      |....... ..+...+...|.+.          .  .. |.|.+.++|++  ++..+.   ...........    ....
T Consensus       215 G~~~~~~~~l~V~~~p~~~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k--~g~~l~---~~~~~~~~~~~~~~~~~~~  289 (527)
T 3qs9_E          215 GRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL--ENKALE---EGNYFEMSTYSTNRTMIRI  289 (527)
T ss_dssp             CEEEEECEEEESSSCCCCSCCEEEECTTSCEEEEEEEEESSSCCCEEEEC--SSSCCC---GGGEEEEEEEETTTEEEEE
T ss_pred             CcccceEEEEEEeccCccCCCceEEeCCCeEEEEEEEccCCCCeEEEEEE--CCEECC---CCceeeeeeeccCcceeeE
Confidence            87543210 00000000122211          1  22 78889999999  533322   11111110000    1122


Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceecc-CCcceEEEcCCeEEEEEEEeeecCceeEE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD-QLSDIKVRAGSNFEFDINVIGEPIPTKEW  250 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~-~~~~~~v~~g~~~~l~c~~~~~p~~~~~W  250 (616)
                      ..|.|.+++.+|.|.|+|.|.|.  . .   ....+.+   ..+|.+... ....+.+.+|+.+.|.|.+.+.|.|.+.|
T Consensus       290 ~~L~I~~v~~~DsG~Y~C~a~N~--~-~---~~~~L~V---~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W  360 (527)
T 3qs9_E          290 LFAFVSSVARNDTGYYTCSSSKH--P-S---QSALVTI---VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW  360 (527)
T ss_dssp             EEEEESSCCGGGCEEEEEEETTE--E-E---EEEEEEE---C--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEE
T ss_pred             EEEEEccCCcccCeEEEEEEEeC--C-C---ceEEEEE---EccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEE
Confidence            35999999999999999999887  1 1   1111222   234444322 22346678899999999999999999999


Q ss_pred             EECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy12426        251 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS  311 (616)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~  311 (616)
                      ++++..+....+..    .....|.|.++...|.|.|+|.|.|..|.....+.|.|..+|.
T Consensus       361 ~k~g~~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~  417 (527)
T 3qs9_E          361 TFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQ  417 (527)
T ss_dssp             EETTEEEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCE
T ss_pred             EECCEECcCCcccc----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCe
Confidence            99999886554422    1334899999999999999999999999888888888876664

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.93  E-value=5.3e-24  Score=205.52  Aligned_cols=268  Identities=15%  Similarity=0.133  Sum_probs=195.9

Q ss_pred             ceEEEcCCeEEEEEEEeeec-CceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426        225 DIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                      .+.+..|+++.|.|.+.+.+ .+.+.|++++..+...........   ..|.|.++...|.|.|+|.+   .|.....+.
T Consensus        15 ~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~~---~g~~~~~~~   88 (325)
T 1n26_A           15 VLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG---RRLLLRSVQLHDSGNYSCYR---AGRPAGTVH   88 (325)
T ss_dssp             EEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEES---SEEEECSCCGGGCEEEEEES---SSSCSCEEE
T ss_pred             cEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCcccccccccc---ceEEecccchhhCeEeEEEe---CCEEeeeEE
Confidence            34457999999999998765 679999998765421111111222   38999999999999999993   677778899


Q ss_pred             EEEecCCCCCCCCccce-eecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC---CCCE-EEcc---ccccceEEecccc-
Q psy12426        304 VTVLDIPSPPEGPLKPS-NITKSSCNLEWRAPRDDGGTDILHYVVEKMDME---TGRW-VPMG---DVSGTYTRAENLI-  374 (616)
Q Consensus       304 l~v~~~p~~p~~~~~~~-~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~---~~~~-~~~~---~~~~~~~~i~~L~-  374 (616)
                      |.|..+|..|.  +.+. ......+.+.|.++.+. + ....|.+.++...   ...| ..+.   ......+.+..+. 
T Consensus        89 L~V~~pP~~P~--l~c~~~~~~~~~~c~W~~~~~~-~-~~~~y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~~~~  164 (325)
T 1n26_A           89 LLVDVPPEEPQ--LSCFRKSPLSNVVCEWGPRSTP-S-LTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEG  164 (325)
T ss_dssp             EEECCCCCCCC--CEEEBSSTTSCEEEEECCSSCC-C-TTCEEEEEEEEESSSSCEEEEEEEEEETTTTEEEEEECCCTT
T ss_pred             EEeccCCCCCc--eeEEeecCCCcEEEEECCCCCC-C-CCceEEEEEEEccCCCCCcccccCCCCCCCCCEEEEECCCcc
Confidence            99998888775  4443 23356899999965543 3 3478888876532   1122 2332   2344567787765 


Q ss_pred             CCCeEEEEEEEEecCcCCCCccccCCEEc-cCCCCCCCCCCCCEEEEecC--CeEEEEecCCCC-CCCCcceeEEEEEee
Q psy12426        375 EGHDYNFRVKAVNKIGESLPLVCQSPITA-KDPFGRPDRPGQPTVTDWGK--DHVDLEWTPPKK-DGGSPISQYIIEKKP  450 (616)
Q Consensus       375 ~~~~y~~~v~a~n~~g~~~~~~~s~~~~~-~~~~~~p~~p~~~~~~~~~~--~~v~l~W~~p~~-~~~~~i~~Y~i~~~~  450 (616)
                      +++.|.|+|.|.|..|.+..    ....+ ......|++|.++.+.....  +++.|+|.+|.. +.+..+.+|+|+|+.
T Consensus       165 ~~~~Y~f~v~A~N~~G~~~s----~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~  240 (325)
T 1n26_A          165 DSSFYIVSMCVASSVGSKFS----KTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRA  240 (325)
T ss_dssp             CCCEEEEEEEEEETTEEEEC----CCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEE
T ss_pred             cCcEEEEEEEEEcCCCCccc----CcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEEe
Confidence            78999999999999998632    12221 22235688898998887653  689999998764 345568999999998


Q ss_pred             CCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCc
Q psy12426        451 KYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF  507 (616)
Q Consensus       451 ~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~  507 (616)
                      .+. .|..... ......++|.+|.|++.|.|||+|.|..|.|.+|..+..+...+..
T Consensus       241 ~~~~~W~~~~~-~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~~~  297 (325)
T 1n26_A          241 ERSKTFTTWMV-KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWT  297 (325)
T ss_dssp             TTCSCCEEEEC-GGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEECCCC
T ss_pred             CCCCCCEEEcc-cCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccceecCC
Confidence            876 7876543 3456789999999999999999999999999999999888776543

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.93  E-value=5.8e-23  Score=202.94  Aligned_cols=326  Identities=17%  Similarity=0.169  Sum_probs=222.0

Q ss_pred             CcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCC
Q psy12426        136 TLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVS  215 (616)
Q Consensus       136 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~  215 (616)
                      .++..|.+++...++     .....|..  ........+.|.+|.++..|.|++.|.|..|.+....    ........+
T Consensus        29 ~~i~~Y~v~~~~~~~-----~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~----~~~~~~~~~   97 (368)
T 1fnf_A           29 PDITGYRITTTPTNG-----QQGNSLEE--VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPIS----DTIIPAVPP   97 (368)
T ss_dssp             SSCCEEEEEEEETTT-----CSSCCEEE--EECTTCCEEECCCCCTTSCEEEEEEEEETTEECCCEE----EEECCCCCC
T ss_pred             CCceEEEEEEEECCC-----CCCceeEE--EecCCcCEEEECCCCCCCEEEEEEEEEcCCCccCcee----eeecCCCcC
Confidence            457789998821100     00112332  2445677999999999999999999999988755321    222221112


Q ss_pred             CceeccCCcceEEEc--CCeEEEEEEEeee-cCc--eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEE
Q psy12426        216 PYINRDQLSDIKVRA--GSNFEFDINVIGE-PIP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       216 P~~~~~~~~~~~v~~--g~~~~l~c~~~~~-p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~  290 (616)
                             +.++.+..  ...+.|.+..... +..  .+.|...+.   ......+........+.|.+|.+...|.|++.
T Consensus        98 -------p~~l~~~~~~~~si~l~W~~p~~~~~~~Y~v~~~~~~~---~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~  167 (368)
T 1fnf_A           98 -------PTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKN---EEDVAELSISPSDNAVVLTNLLPGTEYVVSVS  167 (368)
T ss_dssp             -------CEEEEEESCCSSCEEEEEECCTTCCCSEEEEEEEETTC---TTCCEEEEECTTCCEEEECSCCTTCEEEEEEE
T ss_pred             -------CceeEEEEcCCCeEEEEeeCCCCCCCcEEEEEEEECCC---CCccEEEEcCCCcceEEecCCCCCCEEEEEEE
Confidence                   23333332  3345555544311 111  333433221   11222333344566899999999999999999


Q ss_pred             EEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCC-CEEE-ccccccceE
Q psy12426        291 VKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG-RWVP-MGDVSGTYT  368 (616)
Q Consensus       291 a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~-~~~~-~~~~~~~~~  368 (616)
                      |.|..|.+.. ........|.+|.+ +.+.......+.|+|.++.    ..+.+|.|+++..... .+.. ........+
T Consensus       168 a~~~~g~s~~-~~~~~~~~~~~P~~-l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~  241 (368)
T 1fnf_A          168 SVYEQHESTP-LRGRQKTGLDSPTG-IDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSI  241 (368)
T ss_dssp             EEETTEECCC-EEEEEECCCCCCEE-EEEESCCSSEEEEEEECCS----SCCSEEEEEEECSCCSSCCEEEEEETTCCEE
T ss_pred             EEeCCCCCCC-eEeeecCCCCCCCc-cEEEEccCCEEEEEEeCCC----CCcCEEEEEEecCCCCCCccEEEeCCCcCEE
Confidence            9998875543 33344455666655 6666778899999999763    3688999999865432 2222 223456789


Q ss_pred             EeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEE
Q psy12426        369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK  448 (616)
Q Consensus       369 ~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~  448 (616)
                      .+.+|.+++.|.|+|.|.|..|.+..+.    ...   ..+|.+|.++.+...+.+++.|+|.+|..    .+.+|.|+|
T Consensus       242 ~i~~L~p~t~Y~~~V~A~n~~g~~~~~~----~~~---~t~p~~P~~l~~~~~~~~sv~l~W~~p~~----~i~~Y~v~~  310 (368)
T 1fnf_A          242 TLTNLTPGTEYVVSIVALNGREESPLLI----GQQ---STVSDVPRDLEVVAATPTSLLISWDAPAV----TVRYYRITY  310 (368)
T ss_dssp             EEESCCTTCEEEEEEEEEETTEECCCEE----EEE---ECCCCSCEEEEEEEEETTEEEEEEECCSS----CCSEEEEEE
T ss_pred             EECCCCCCCEEEEEEEEEeCCccCCccc----ccc---cCCCCCCCeeEEEecCCCEEEEEeeCCCC----ccceEEEEE
Confidence            9999999999999999999999876532    122   25678888999988999999999998654    488999999


Q ss_pred             eeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCC
Q psy12426        449 KPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA  499 (616)
Q Consensus       449 ~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~  499 (616)
                      +..++ .......+.+....+++.+|.|++.|.|+|+|.|..|.|+++....
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~s~~~~  362 (368)
T 1fnf_A          311 GETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPI  362 (368)
T ss_dssp             EETTCCSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEECCCSSSCCBCCCE
T ss_pred             EECCCCCccEEEEcCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCcccCcee
Confidence            98765 3333345567788999999999999999999999999999886443

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.93  E-value=7e-24  Score=209.56  Aligned_cols=262  Identities=19%  Similarity=0.288  Sum_probs=199.3

Q ss_pred             EecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEE
Q psy12426        266 VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHY  345 (616)
Q Consensus       266 ~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y  345 (616)
                      ........+.|.+|.+...|.|++.|.|..|.+.... ..+...+.+|.+ +.+.......+.|+|.++..   ..+.+|
T Consensus        52 ~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~~~~~~~p~~-l~~~~~~~~si~l~W~~p~~---~~~~~Y  126 (368)
T 1fnf_A           52 VVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPIS-DTIIPAVPPPTD-LRFTNIGPDTMRVTWAPPPS---IDLTNF  126 (368)
T ss_dssp             EECTTCCEEECCCCCTTSCEEEEEEEEETTEECCCEE-EEECCCCCCCEE-EEEESCCSSCEEEEEECCTT---CCCSEE
T ss_pred             EecCCcCEEEECCCCCCCEEEEEEEEEcCCCccCcee-eeecCCCcCCce-eEEEEcCCCeEEEEeeCCCC---CCCcEE
Confidence            3445567899999999999999999999887654332 233333334544 66666788999999998732   468899


Q ss_pred             EEEEEeCCCC-CEEEcc-ccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecC
Q psy12426        346 VVEKMDMETG-RWVPMG-DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGK  423 (616)
Q Consensus       346 ~v~~~~~~~~-~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~  423 (616)
                      .|+++..... .|.... ......+.+.+|.+++.|.|+|.|.|..|.+.+.    .....   ..|.+|.++.+...+.
T Consensus       127 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~----~~~~~---~~~~~P~~l~~~~~~~  199 (368)
T 1fnf_A          127 LVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL----RGRQK---TGLDSPTGIDFSDITA  199 (368)
T ss_dssp             EEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE----EEEEE---CCCCCCEEEEEESCCS
T ss_pred             EEEEEECCCCCccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCe----Eeeec---CCCCCCCccEEEEccC
Confidence            9999875443 444432 3456789999999999999999999999876542    11111   4566788888888899


Q ss_pred             CeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEE
Q psy12426        424 DHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       424 ~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~  502 (616)
                      +++.|+|.+|.    +.+.+|.|+|+..+. .+............+++.+|.|++.|.|+|+|.|..|.|+++..    +
T Consensus       200 ~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~----~  271 (368)
T 1fnf_A          200 NSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG----Q  271 (368)
T ss_dssp             SEEEEEEECCS----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEEE----E
T ss_pred             CEEEEEEeCCC----CCcCEEEEEEecCCCCCCccEEEeCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCcccc----c
Confidence            99999999763    258999999988764 33333455667889999999999999999999999998875431    1


Q ss_pred             eccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCC
Q psy12426        503 CKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPIS  582 (616)
Q Consensus       503 ~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~  582 (616)
                                                                        ..++|.+|.++.+...+.++|.|+|++|. 
T Consensus       272 --------------------------------------------------~~t~p~~P~~l~~~~~~~~sv~l~W~~p~-  300 (368)
T 1fnf_A          272 --------------------------------------------------QSTVSDVPRDLEVVAATPTSLLISWDAPA-  300 (368)
T ss_dssp             --------------------------------------------------EECCCCSCEEEEEEEEETTEEEEEEECCS-
T ss_pred             --------------------------------------------------ccCCCCCCCeeEEEecCCCEEEEEeeCCC-
Confidence                                                              12557888888888899999999999975 


Q ss_pred             CCCCceeeeEEEEeecCCC
Q psy12426        583 NGGSAIKGYEVERRERTSG  601 (616)
Q Consensus       583 ~~~~~i~~Y~i~~~~~~~~  601 (616)
                         +.|.+|+|.|+..++.
T Consensus       301 ---~~i~~Y~v~~~~~~~~  316 (368)
T 1fnf_A          301 ---VTVRYYRITYGETGGN  316 (368)
T ss_dssp             ---SCCSEEEEEEEETTCC
T ss_pred             ---CccceEEEEEEECCCC
Confidence               4589999999987654

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.93  E-value=3.4e-24  Score=205.97  Aligned_cols=277  Identities=25%  Similarity=0.331  Sum_probs=207.8

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEe-cCCceEEEecCCCCCCcEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      .+|.|. ..+.++.+..|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.. .+....|.|.++...|.|.|+|.|
T Consensus         3 ~~P~~~-~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a   81 (305)
T 2nzi_A            3 MAPHFK-EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (305)
T ss_dssp             CCCEEE-ECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCCeee-ecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEE
Confidence            456663 4456789999999999999999999999999999987643 3555443 455679999999999999999999


Q ss_pred             EcCCCCceeeEEEEEecCCCCCCCC-----ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-----CCEEEcc
Q psy12426        292 KNSWGTDKGTAKVTVLDIPSPPEGP-----LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-----GRWVPMG  361 (616)
Q Consensus       292 ~n~~g~~~~~~~l~v~~~p~~p~~~-----~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-----~~~~~~~  361 (616)
                      .|..|.....+.|.+..+|.....+     ..+....+..+.|.|......    ..  .+.|...+.     .......
T Consensus        82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p----~p--~i~W~~~~~~~~~~~~~~~~~  155 (305)
T 2nzi_A           82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP----DP--VITWQKGQDLIDNNGHYQVIV  155 (305)
T ss_dssp             EETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEES----CC--EEEEEESSSBCCSSSSCEEEE
T ss_pred             EcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCC----CC--EEEEEECCEECCCCCcEEEEE
Confidence            9998888888888887655322110     123345577888888753221    11  233332211     1111111


Q ss_pred             ccccceEEecc-ccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCc
Q psy12426        362 DVSGTYTRAEN-LIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSP  440 (616)
Q Consensus       362 ~~~~~~~~i~~-L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~  440 (616)
                      ......+.+.+ +...+.|.|+|.|.|..|....   +..+.+.   ..|.+|.++.+.....+++.|+|.+|..+++.+
T Consensus       156 ~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~---~~~l~v~---~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~  229 (305)
T 2nzi_A          156 TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK---TVELDVA---DVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSK  229 (305)
T ss_dssp             CSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEE---EEEEEEE---BCCCCCEEEEEESCCSSCEEEEEECCSCCSBSC
T ss_pred             cCCceEEEEecCCccCccEEEEEEEEeCCCceee---EEEEEEe---cCCCCCCCceeeeccCCEEEEEEcCCccCCCCc
Confidence            22346788888 9999999999999999997543   2334443   567888888888889999999999887778888


Q ss_pred             ceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426        441 ISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       441 i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      +..|.++++.... .|.......  ...++|.+|.+++.|.|+|+|.|..|.|++|..+..+++.+
T Consensus       230 i~~y~v~~~~~~~~~w~~~~~~~--~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~~t~~  293 (305)
T 2nzi_A          230 ITNYIVEKCATTAERWLRVGQAR--ETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKE  293 (305)
T ss_dssp             EEEEEEEEEETTSCCEEEEEEES--SSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCEECCC
T ss_pred             eeEEEEEEecCCCCccEECcccc--CceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCEEcCC
Confidence            9999999998876 787765433  67899999999999999999999999999999988877654

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.93  E-value=1e-22  Score=201.62  Aligned_cols=323  Identities=18%  Similarity=0.217  Sum_probs=219.6

Q ss_pred             cccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCC
Q psy12426        137 LLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP  216 (616)
Q Consensus       137 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P  216 (616)
                      .+.+|.+++...++     .....+.  .........+.|.+|.++..|.|++.|.|..|.+...      ........|
T Consensus        31 ~~~~Y~v~~~~~~~-----~~~~~~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~------~~~~~~~~p   97 (375)
T 3t1w_A           31 DITGYRITTTPTNG-----QQGNSLE--EVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPI------SDTIIPEVP   97 (375)
T ss_dssp             SCCEEEEEEEETTC-----TTSCCEE--EEEETTCCEEEECCCCTTCCEEEEEEEEETTEECCCE------EEEECCCCC
T ss_pred             CeeeEEEEEEECCC-----CCCccee--EEcCCCccEEEEcCCcCCCEEEEEEEEEcCCCCCCcE------EeeEcCCCC
Confidence            56778888721200     0111222  2334567799999999999999999999988765532      221112222


Q ss_pred             ceeccCCcceEEEc--CCeEEEEEEEeeecC---ceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEE
Q psy12426        217 YINRDQLSDIKVRA--GSNFEFDINVIGEPI---PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       217 ~~~~~~~~~~~v~~--g~~~~l~c~~~~~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      .     +.++.+..  ...+.|.+.......   -.+.|...+..   ..............+.|.+|.+...|.|++.|
T Consensus        98 ~-----p~~l~~~~~~~~si~l~W~~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a  169 (375)
T 3t1w_A           98 Q-----LTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEG---IPIFEDFVDSSVGYYTVTGLEPGIDYDISVIT  169 (375)
T ss_dssp             C-----CSCCEEECCCSSEEEEECCCCCCTTEEEEEEEEEESSSC---CSCEEEEECTTCCEEEEECCCTTCEEEEEEEE
T ss_pred             C-----CceEEEEecCCCeEEEEEECCCCCCceEEEEEEEECCCC---CceeEEEcCCCcceEEEeCCCCCCEEEEEEEE
Confidence            1     23333332  334555544321101   13444433321   11223334455668999999999999999999


Q ss_pred             EcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCEEEcc-ccccceEE
Q psy12426        292 KNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMG-DVSGTYTR  369 (616)
Q Consensus       292 ~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~-~~~~~~~~  369 (616)
                      .|..|.+..+.. .....+.+|.+ +.+.......+.|+|.++.   +..+.+|.|+++..+. ..|.... ......+.
T Consensus       170 ~~~~g~s~~s~~-~~~t~~~~p~~-l~~~~~~~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (375)
T 3t1w_A          170 LINGGESAPTTL-TQQTAVPPPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVV  244 (375)
T ss_dssp             EETTEECCCEEE-EEECCCCCCEE-EEEESCCSSCEEEEEECCS---SCCCCEEEEEEEEGGGTTCCEEEEECTTCCEEE
T ss_pred             EeCCcccCCeee-eeecCCCCCce-eEEEecccCEEEEEEcCCC---CCCccEEEEEEEeCCCCCCcEEEEcCCCcCEEE
Confidence            998886655443 33334445554 6666778899999999763   3468999999987543 3343332 34457899


Q ss_pred             eccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEe
Q psy12426        370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK  449 (616)
Q Consensus       370 i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~  449 (616)
                      +.+|.+++.|.|+|.|.|..|.+.+.    .....   ..|.+|.++.+..++.+++.|+|.+|.    +.+.+|.|+|+
T Consensus       245 i~~L~p~t~Y~~~V~A~~~~g~s~~~----~~~~~---t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~  313 (375)
T 3t1w_A          245 LTNLLPGTEYVVSVSSVYEQHESTPL----RGRQK---TGLDSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHH  313 (375)
T ss_dssp             ECSCCTTCEEEEEEEEEETTEECCCE----EEEEE---CCCCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEE
T ss_pred             eCCCCCCCEEEEEEEEEcCCCcCCce----eeEEe---cCCCCCCccEeeeccCCEEEEEECCCC----cceeeEEEEEE
Confidence            99999999999999999998887653    12222   367788899998889999999999863    35899999999


Q ss_pred             eCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCC
Q psy12426        450 PKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSK  496 (616)
Q Consensus       450 ~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~  496 (616)
                      ..+. ..............++|.+|.|++.|.|+|+|.|..|.|++..
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~s  361 (375)
T 3t1w_A          314 PEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI  361 (375)
T ss_dssp             ETTCCSSCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             ECCCCCcceeEEcCCCccEEEECCCCCCCEEEEEEEEECCCCCCCcee
Confidence            8775 3333445567788999999999999999999999999998653

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=209.90  Aligned_cols=266  Identities=12%  Similarity=0.175  Sum_probs=189.6

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeee-cCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGE-PVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||.+. + +.++.|.+|+.+.|.|.+.|. |.|.|+|+|+|..+.....|.-.                           
T Consensus         7 ~P~~~-~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~---------------------------   57 (317)
T 2y25_A            7 GPHFV-E-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK---------------------------   57 (317)
T ss_dssp             CCEEE-E-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------------------------------
T ss_pred             CCcEe-e-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE---------------------------
Confidence            56666 3 446899999999999999887 88999999999988754444221                           


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCccee------------ecCCCceeee--ec----------
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA------------RAKKGKCYHL--VG----------  135 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~------------~~~~p~~~~~--~g----------  135 (616)
                         .....|.|.++...|.|.|+|.|.|..|.............            ....+..+..  .|          
T Consensus        58 ---~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~  134 (317)
T 2y25_A           58 ---DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYY  134 (317)
T ss_dssp             ----CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSC
T ss_pred             ---CCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccC
Confidence               12358999999999999999999998886544311111100            0011111110  02          


Q ss_pred             CcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEec-----
Q psy12426        136 TLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR-----  210 (616)
Q Consensus       136 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~-----  210 (616)
                      .|.+.+.|++  ++..+.   .......  ...+....|.|.++...|.|.|+|.|.|..|....+   ..+.+.     
T Consensus       135 ~p~~~i~W~~--~~~~~~---~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~---~~l~v~~~~~~  204 (317)
T 2y25_A          135 VEDLKVNWSH--NGSAIR---YSDRVKT--GVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT---VDLSGQAYDEA  204 (317)
T ss_dssp             CSSCEEEEEE--SSSBCC---CCSSEEE--EECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEE---EEECHHHHHHH
T ss_pred             CCCcEEEEEE--CCEECC---CCCCeEE--eccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEE---EEEeeeecccc
Confidence            5788999999  533322   1121111  222344569999999999999999999987754322   111111     


Q ss_pred             ------------cccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec-CCceEEEec
Q psy12426        211 ------------AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVF  277 (616)
Q Consensus       211 ------------~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~  277 (616)
                                  .....|.+....+....+..|+.+.|.|.+.+.|.+.+.|++++..+..+.++.+... +....|.|.
T Consensus       205 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~  284 (317)
T 2y25_A          205 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTIN  284 (317)
T ss_dssp             HHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEB
T ss_pred             chhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEEC
Confidence                        1122455545556678899999999999999999999999999999987777777655 566799999


Q ss_pred             CCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy12426        278 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD  308 (616)
Q Consensus       278 ~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~  308 (616)
                      ++...|.|.|+|.|.|..|.....+.|.|..
T Consensus       285 ~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          285 GVSTADSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             SCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            9999999999999999999988888888764

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.93  E-value=1.6e-23  Score=217.32  Aligned_cols=286  Identities=9%  Similarity=0.022  Sum_probs=179.5

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCC--e-----------------------------eeee-------ccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGG--N-----------------------------PLNL-------RPI   48 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~-----------------------------~l~~-------~G~   48 (616)
                      ..|.++.|.+|+.|.|.|.+.|.|.|.|.|+|++  +                             .|.+       +|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   84 (523)
T 2rcj_C            5 TQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESD   84 (523)
T ss_pred             ccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEE
Confidence            4588999999999999999999999999999974  1                             1222       999


Q ss_pred             eEEEeecCCCC-------------------Cc------------e--eEeeeccCCc-c---c--eeeccccCCC-----
Q psy12426         49 WEKCAQTEGDT-------------------PK------------G--KVLDLIEGNH-P---I--WEKCAQTEGD-----   84 (616)
Q Consensus        49 Y~C~a~n~~~~-------------------~~------------~--~v~~~~~~~~-p---~--w~~~~~~~~~-----   84 (616)
                      |+|.|.|..|.                   |.            +  ..+.|...|. |   .  |++++.....     
T Consensus        85 Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  164 (523)
T 2rcj_C           85 YYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT  164 (523)
T ss_pred             EEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEec
Confidence            99999996431                   10            0  1122322233 2   2  9998865321     


Q ss_pred             ------C------CceEecCcccCCeEEEEEEEEcCCCCCCCCCCC-------CcceeecCCCc-------eee----ee
Q psy12426         85 ------T------PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT-------APHIARAKKGK-------CYH----LV  134 (616)
Q Consensus        85 ------~------~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~-------~~~~~~~~~p~-------~~~----~~  134 (616)
                            .      ..|.|.++...|.|.|+|.|.|..|........       ....+....|.       .+.    ..
T Consensus       165 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~  244 (523)
T 2rcj_C          165 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVK  244 (523)
T ss_pred             cccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEe
Confidence                  1      248899999999999999999998865443111       00111111111       111    22


Q ss_pred             cC-ccc-ccEEEEeeccCcccccccCCCceEecccCC---CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEe
Q psy12426        135 GT-LLK-DSIYEQLKRSGLFDQFHLCPIWEKCAQTEG---DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA  209 (616)
Q Consensus       135 g~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~  209 (616)
                      |. |.+ .+.|++  ++..+.    ...........+   ....|.|.++..+| |.|+|.|.|..|.....     ..+
T Consensus       245 g~~P~p~~v~W~k--~g~~~~----~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~-----~~l  312 (523)
T 2rcj_C          245 DYFPQPVTVSWNS--GALTSG----VHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD-----KRV  312 (523)
T ss_pred             ceeCCCeEEEEec--CCcccc----eEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceE-----Eec
Confidence            65 656 799998  532211    000000000001   12378999999999 99999999998874321     222


Q ss_pred             ccccCCCceeccCCcce-EEEcCCeEEEEEEEeeecC----ceeEEEECCeeecccCcEEEE-ecCC----ceEEEecCC
Q psy12426        210 RAKKVSPYINRDQLSDI-KVRAGSNFEFDINVIGEPI----PTKEWLCNDITIISKDRFKIV-NDDK----STKLKVFDS  279 (616)
Q Consensus       210 ~~~~~~P~~~~~~~~~~-~v~~g~~~~l~c~~~~~p~----~~~~W~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~l  279 (616)
                      ... ..|.+....+... .+.+|+.+.|.|.+.|.+.    +.+.|++++..+......... ..++    .+.|.|.++
T Consensus       313 ~v~-~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~  391 (523)
T 2rcj_C          313 EPL-SLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQ  391 (523)
T ss_pred             CCC-cCceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHH
Confidence            111 2344333333333 3788999999999998653    599999999987644322211 1111    236889999


Q ss_pred             CCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        280 KRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       280 ~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      ...|.|.|+|.|.|..+.......+.
T Consensus       392 ~~~d~G~Y~C~a~n~~~~~~~~~~~~  417 (523)
T 2rcj_C          392 NWLDGKEYKCKVSNKALPAPIEKTIS  417 (523)
T ss_pred             HhcCCCeEEEEEeCCCCCCceeEEEE
Confidence            99999999999999877665444444

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.92  E-value=1.4e-23  Score=209.49  Aligned_cols=300  Identities=14%  Similarity=-0.002  Sum_probs=213.0

Q ss_pred             CCeEEEEEEEEe----CCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeee
Q psy12426        182 GNQYEFRVLAVN----KGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI  257 (616)
Q Consensus       182 ~~~~~y~c~a~n----~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~  257 (616)
                      ...|.++++...    ..|.+..|+++....+... .+..+ ...|.+..+..|++++|.|.+.   .+.+.|++++..+
T Consensus       167 c~~~~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~-~~t~i-~v~P~~~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i  241 (488)
T 2q7n_A          167 CATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWI-RNTET-NVFPQDKVVLAGSNMTICCMSP---TKVLSGQIGNTLR  241 (488)
T ss_dssp             SSCCEEEEEEEECCTTCCSCBCCCCCCCCEECCCC-CCSSC-CEECTTCEEESSCCCEEEECCS---SCEEEEEETTEEC
T ss_pred             ccceEEEEEEEeccccccCCCCCcCCCChhhcCCc-CCCce-EECCCCCEEcCCCCEEEEEECC---CCEEEEEECCEEC
Confidence            557888888875    3456667777766655332 22222 3445677789999999999988   4689999999876


Q ss_pred             cccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCC
Q psy12426        258 ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDD  337 (616)
Q Consensus       258 ~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~  337 (616)
                      ...     ...+....|+|.++...|.|.|.|.+.+  +.....+.+.+..+|.+|.+ +.+.......+.++|.++...
T Consensus       242 ~~~-----ri~~~~~~L~I~nl~~sd~g~y~~~C~~--~~~i~~~~l~v~~pP~~P~n-l~C~~~~~~svtcsW~pg~~~  313 (488)
T 2q7n_A          242 PLI-----HLYGQTVAIHILNIPVSENSGTNIIFIT--DDDVYGTVVFAGYPPDVPQK-LSCETHDLKEIICSWNPGRIT  313 (488)
T ss_dssp             CCE-----ECSSSCEEEECCSCCCCCSSCEEEEEEE--SSCEEEEEEEEECCCCCCCS-CEEEBSSSSEEEEEECCCSCC
T ss_pred             chh-----hccceEEEEEEeCCCcccCCcEEEEEEc--CCeEEEEEEEeeCCCCCCcc-cEEEEcCCCEEEEEEeCCCcC
Confidence            533     1345667999999999988888877763  33344777888889999887 676666788999999986654


Q ss_pred             --CCCceEEEEEEEEeCCC-CCEEEccc--cccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEcc-CCCCCCC
Q psy12426        338 --GGTDILHYVVEKMDMET-GRWVPMGD--VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK-DPFGRPD  411 (616)
Q Consensus       338 --~~~~i~~y~v~~~~~~~-~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~-~~~~~p~  411 (616)
                        ++..+..|.++++..+. ..|.....  .....+.+..+...+.|.|+|.|.|..|.+. +    .+.+. ....+|+
T Consensus       314 ~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~-S----~~~~~~~~~v~P~  388 (488)
T 2q7n_A          314 GLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-S----AVVINVTERVAPH  388 (488)
T ss_dssp             CCCTTSSCEEEEEETTTCCEEEEECSSCCCSSCEEEEEECCSSCCCCEEEEEEEETTEEEE-E----EEECCGGGTBCCC
T ss_pred             CCCCCCceeEEEEEEECCCCCCCccccccCCceEEEEEcCCCCccEEEEEEEEEeCCCCcc-c----eEEEEecCCCCCC
Confidence              24568899999865432 23433322  2334566654444689999999999999843 2    22222 2235788


Q ss_pred             CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeE-eecCCccEE--EcCCCCCCCeEEEEEEEEc
Q psy12426        412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKAC-IVPANITAT--SVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       412 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~-~~~~~~~~~--~l~~L~p~t~Y~~~v~a~n  487 (616)
                      +|.++++...+.+++.|+|++|...++ .+..|+|+|+..++ .|.... ........+  +|.+|.|++.|.|+|+|.+
T Consensus       389 PP~nl~v~~~s~~sl~LsW~pP~~~~g-~~l~YeV~Yr~~~~~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~  467 (488)
T 2q7n_A          389 DPTSLKVKDINSTVVTFSWYLPGNFTK-INLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS  467 (488)
T ss_dssp             CCEEEEEEECSTTCEEEEEEEEEECSS-SEEEEEEEEBCTTSCCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE
T ss_pred             CCeEEEEEecCCCEEEEEEeCCCCCCC-cceEEEEEEEECCCCCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE
Confidence            999999988889999999998765444 68999999998876 554322 222223455  9999999999999999999


Q ss_pred             CCCCCCCCCCCCCE
Q psy12426        488 KGGPGEPSKASAPV  501 (616)
Q Consensus       488 ~~G~g~~s~~~~~~  501 (616)
                       .|.|.+|..+...
T Consensus       468 -~g~G~WS~WS~~v  480 (488)
T 2q7n_A          468 -KTFWKWSRWSDEK  480 (488)
T ss_dssp             -SSCSSCCCCCCCC
T ss_pred             -CCCCCCCCCcCCE
Confidence             8886555554443

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.92  E-value=8.6e-24  Score=211.87  Aligned_cols=259  Identities=17%  Similarity=0.264  Sum_probs=184.5

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee---ccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      ||.+. ..+.+..+.+|+.+.|.|.+.|.|.|.|+|+|++..+..   ...+.                           
T Consensus       121 p~~~~-~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~---------------------------  172 (403)
T 3laf_A          121 PLRFL-SQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVV---------------------------  172 (403)
T ss_dssp             CCEEC-SCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEE---------------------------
T ss_pred             CCccc-cCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEE---------------------------
Confidence            34444 457889999999999999999999999999999987752   11110                           


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcce---------eecCCCceee------------eecC
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI---------ARAKKGKCYH------------LVGT  136 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~---------~~~~~p~~~~------------~~g~  136 (616)
                          ......|.|.++...|.|.|+|.|.|..|............         .....|....            ..|.
T Consensus       173 ----~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  248 (403)
T 3laf_A          173 ----VLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGY  248 (403)
T ss_dssp             ----ECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEE
T ss_pred             ----EcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCC
Confidence                11245899999999999999999999877543221000000         0011111111            2277


Q ss_pred             cccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCC
Q psy12426        137 LLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP  216 (616)
Q Consensus       137 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P  216 (616)
                      |.+.+.|++  ++..+.  ........     .....|.|.++..+|.|.|+|.|.|..|....+   ..+.+   ..+|
T Consensus       249 p~~~~~W~~--~~~~~~--~~~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~---~~l~V---~~~p  313 (403)
T 3laf_A          249 PPPSFTWLR--GEEVIQ--LRSKKYSL-----LGGSNLLISNVTDDDSGTYTCVVTYKNENISAS---AELTV---LVPP  313 (403)
T ss_dssp             SCCEEEEEE--TTEECC--CSSSSEEE-----ETTTEEEECSCCGGGCEEEEEEEEETTEEEEEE---EEEEE---EEEE
T ss_pred             CCCeEEEEE--CCeecc--CCCceEEE-----CCccEEEEeCCCHHHCEEEEEEEEcCCCceEEE---EEEEE---ECCC
Confidence            888999998  532221  11111111     123479999999999999999999988763321   11222   2345


Q ss_pred             ceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        217 YINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       217 ~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      .+ ...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+   .|.|.++...|.|.|+|.|.|..|
T Consensus       314 ~~-~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G  389 (403)
T 3laf_A          314 WF-LNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAG  389 (403)
T ss_dssp             EE-EECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTT---EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cE-eecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCc---cEEEeccccccCEEEEEEEEcCCc
Confidence            55 34456677889999999999999999999999999998777776665443   899999999999999999999999


Q ss_pred             CceeeEEEEEecCC
Q psy12426        297 TDKGTAKVTVLDIP  310 (616)
Q Consensus       297 ~~~~~~~l~v~~~p  310 (616)
                      ....++.|.|..+|
T Consensus       390 ~~~~~~~l~V~~P~  403 (403)
T 3laf_A          390 NAQSSAQLIVPKPA  403 (403)
T ss_dssp             EEEEEEEEECCCC-
T ss_pred             eEEEEEEEEEeCCC
Confidence            99999988887654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.92  E-value=1e-23  Score=201.12  Aligned_cols=265  Identities=12%  Similarity=0.163  Sum_probs=178.5

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeec-CCeeeeee-CCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEP-VPHVDWRA-GGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~-~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      ||.+... |.+..|.+|+.+.|.|.+.|.| .|.|+|+| +|..+.. .+.+.-...                       
T Consensus         2 ~~~v~~~-p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~-----------------------   57 (291)
T 1qz1_A            2 VLQVDIV-PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN-----------------------   57 (291)
T ss_dssp             CCCEEEE-SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEE-----------------------
T ss_pred             CcceEec-CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEc-----------------------
Confidence            5666644 8899999999999999999987 68999999 7777653 233322210                       


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcce----eecCCCcee--------e----eecCccccc
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI----ARAKKGKCY--------H----LVGTLLKDS  141 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~----~~~~~p~~~--------~----~~g~p~~~~  141 (616)
                          ......|.|.++...|.|.|+|.|.|..|..... ...+..    .....|...        .    ..|.|.+.+
T Consensus        58 ----~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~-~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v  132 (291)
T 1qz1_A           58 ----DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA-TVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI  132 (291)
T ss_dssp             ----ETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEE-EEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEE
T ss_pred             ----CCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEE-EEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEE
Confidence                1124689999999999999999999988642211 000000    000111111        1    227788899


Q ss_pred             EEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceecc
Q psy12426        142 IYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRD  221 (616)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~  221 (616)
                      .|++  ++..+.. .......     ......|.|.++...|.|.|+|.|.|..+....+ ....+.+   ..+|.+...
T Consensus       133 ~W~~--~~~~~~~-~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~-~~~~l~v---~~~p~~~~~  200 (291)
T 1qz1_A          133 IWKH--KGRDVIL-KKDVRFI-----VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINF-KDIQVIV---NVPPTVQAR  200 (291)
T ss_dssp             EEEE--TTSCSST-TCCTTEE-----ECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEE-EEEEEEE---EEEEEEEES
T ss_pred             EEEE--CCEEccc-CCCceEE-----EccCCcEEEccCccccCeEEEEEEEecCCCceee-EEEEEEE---ecCCccccc
Confidence            9998  5332210 0111111     1223479999999999999999999876432111 0111221   134544322


Q ss_pred             -CCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC----cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        222 -QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD----RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       222 -~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                       .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....    ++..  ......|.|.++...|.|.|+|.|.|..|
T Consensus       201 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  278 (291)
T 1qz1_A          201 QSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF--SDDSSELTIRNVDKNDEAEYVCIAENKAG  278 (291)
T ss_dssp             CSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEE--CTTSCEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEE--cCCCcEEEEEecChhcCEEEEEEEEeCCC
Confidence             2235567789999999999999999999999999876553    3333  33345899999999999999999999999


Q ss_pred             CceeeEEEEEec
Q psy12426        297 TDKGTAKVTVLD  308 (616)
Q Consensus       297 ~~~~~~~l~v~~  308 (616)
                      .....+.|.|..
T Consensus       279 ~~~~~~~l~V~~  290 (291)
T 1qz1_A          279 EQDASIHLKVFA  290 (291)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             ceEEEEEEEEEc
Confidence            988888888764

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.91  E-value=3.2e-23  Score=197.21  Aligned_cols=226  Identities=18%  Similarity=0.316  Sum_probs=175.2

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC-CCCEEEcc-ccccceEEeccccCCCeEEEEEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME-TGRWVPMG-DVSGTYTRAENLIEGHDYNFRVKAV  386 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~-~~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~  386 (616)
                      +|.+|.+ +.+.....+++.|+|.++.    ..+.+|.|+++... ...|.... ......+.+.+|.+++.|.|+|.|.
T Consensus        20 ~p~~P~~-l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   94 (290)
T 3r8q_A           20 AIPAPTD-LKFTQVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYAL   94 (290)
T ss_dssp             CCCCCEE-EEEEEECSSCEEEEEECCS----SCCCEEEEEEEESSSSSCCEEEEECTTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             CCCCCCc-eEEEECCCCEEEEEEeCCC----CCeeEEEEEEEeCCCCCceEEEEcCCCccEEEeCCCCCCCEEEEEEEEE
Confidence            4555555 7777889999999999762    36899999998754 34454443 2456789999999999999999999


Q ss_pred             ecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCcc
Q psy12426        387 NKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANIT  466 (616)
Q Consensus       387 n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~  466 (616)
                      |..|.+.++.    ..+.+. ..|.+|.++.+...+.+++.|+|.+|.    +.+.+|.|+|+..++.............
T Consensus        95 ~~~g~s~~s~----~~~~t~-~~~~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~  165 (290)
T 3r8q_A           95 KDTLTSRPAQ----GVVTTL-ENVSPPRRARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRTIKPDVR  165 (290)
T ss_dssp             ETTEECCCEE----EEEECC-CCCCCCEEEEEEEECSSCEEEEEECCS----CCCCEEEEEEEESSSCCCEEEEECTTCS
T ss_pred             eCCCCCCCcc----eeEecC-CCCCCCceeEEEEcCCCeEEEEEeCCC----CcccEEEEEEEECCCCcceEEecCCCcc
Confidence            9999877642    223332 345788899999999999999999762    2589999999887763223344556788


Q ss_pred             EEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccc
Q psy12426        467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKS  546 (616)
Q Consensus       467 ~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  546 (616)
                      .++|.+|.|++.|.|+|+|.|..|.|++..    ...                                           
T Consensus       166 ~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~----~~~-------------------------------------------  198 (290)
T 3r8q_A          166 SYTITGLQPGTDYKIYLYTLNDNARSSPVV----IDA-------------------------------------------  198 (290)
T ss_dssp             EEEECSCCTTCEEEEEEEEEETTEECCCEE----EEE-------------------------------------------
T ss_pred             EEEECCCCCCCEEEEEEEEEeCCcccCCEE----EEe-------------------------------------------
Confidence            999999999999999999999999876421    111                                           


Q ss_pred             eeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCCCeEEc
Q psy12426        547 MVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKI  606 (616)
Q Consensus       547 ~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~w~~~  606 (616)
                             .+.|.+|.++.+...+.+++.|+|.+|.    +.+.+|+|.|+..++..|...
T Consensus       199 -------~t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~  247 (290)
T 3r8q_A          199 -------STAIDAPSNLRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVV  247 (290)
T ss_dssp             -------ECCCCCCEEEEEEEEETTEEEEEEECCS----SCCCEEEEEEECTTSCCEECS
T ss_pred             -------cCCCCCCCccEEEeeCCCEEEEEEeCCC----CcccEEEEEEEeCCCCcceeE
Confidence                   1447788888888899999999999974    689999999998887777643

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.91  E-value=8.3e-24  Score=201.77  Aligned_cols=264  Identities=16%  Similarity=0.178  Sum_probs=178.9

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeee-CCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRA-GGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~-~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +|.+... +.++.+.+|+.|.|.|.+.|.|. .|.|+| +|..+...++|.-..                          
T Consensus         4 ~p~v~~~-~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~--------------------------   55 (291)
T 2wim_A            4 LLQVTIS-LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQK--------------------------   55 (291)
T ss_dssp             CCEEEES-CSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEE--------------------------
T ss_pred             CceEEEe-ccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEec--------------------------
Confidence            4667644 88999999999999999999885 899999 677666445543321                          


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeec-----CCCc--------eee----eecCcccccE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA-----KKGK--------CYH----LVGTLLKDSI  142 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~-----~~p~--------~~~----~~g~p~~~~~  142 (616)
                        ......|.|.++...|.|.|+|.|.|..|...... ... .+..     ..+.        .+.    ..|.|.+.+.
T Consensus        56 --~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~-~~l-~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~  131 (291)
T 2wim_A           56 --EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEAT-VVL-EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVS  131 (291)
T ss_dssp             --ETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEE-EEE-EEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEE
T ss_pred             --CCCEEEEEEccCCcccCEEEEEEEecccCceEEEE-EEE-EecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEE
Confidence              11235899999999999999999999887643210 000 0000     0111        111    2277888899


Q ss_pred             EEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccC
Q psy12426        143 YEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQ  222 (616)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~  222 (616)
                      |++  ++..+.. ........     .....|.|.++...|.|.|+|.|.|..+......   .+.+. ...+|.+....
T Consensus       132 W~~--~~~~~~~-~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~---~~~~~-v~~~p~~~~~~  199 (291)
T 2wim_A          132 WLY--HNEEVTT-ISDNRFAM-----LANNNLQILNINKSDEGIYRCEGRVEARGEIDFR---DIIVI-VNVPPAISMPQ  199 (291)
T ss_dssp             EEC--C----CB-CCCSSEEE-----CTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEE---EEEEE-EEBCCCCBCSC
T ss_pred             EEE--CCccccc-cCCceEEE-----ccCCCEEEEecchhhCEEEEEEEEECCCCeeEEe---eEEEE-eccCCccccCc
Confidence            998  5332210 01111111     1234799999999999999999999875422110   11111 12345543221


Q ss_pred             C-cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        223 L-SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       223 ~-~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      . ....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+..  ....|.|.++...|.|.|+|.|.|..|....+
T Consensus       200 ~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~  277 (291)
T 2wim_A          200 KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKAGEDEKQ  277 (291)
T ss_dssp             SEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECS--TTCEEEEESCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             ccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcC--CccEEEEeeCCcccCEEEEEEEEECCCceeee
Confidence            1 13456789999999999999999999999999987777665543  34589999999999999999999999999999


Q ss_pred             EEEEEecCC
Q psy12426        302 AKVTVLDIP  310 (616)
Q Consensus       302 ~~l~v~~~p  310 (616)
                      +.+.+..++
T Consensus       278 ~~l~v~~~~  286 (291)
T 2wim_A          278 AFLQVFVQH  286 (291)
T ss_dssp             EEEEC----
T ss_pred             EEEEEEEec
Confidence            999887654

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.91  E-value=5e-23  Score=195.30  Aligned_cols=223  Identities=18%  Similarity=0.278  Sum_probs=170.0

Q ss_pred             EEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC-CCCEEEc-cccccceEEeccccCCCeEEE
Q psy12426        304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME-TGRWVPM-GDVSGTYTRAENLIEGHDYNF  381 (616)
Q Consensus       304 l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~-~~~~~~~-~~~~~~~~~i~~L~~~~~y~~  381 (616)
                      +....+|.+|.+ +.+......++.|+|.++.    ..+.+|.|+++... ...|... .......+.+.+|.+++.|.|
T Consensus         9 ~~~~~~p~~P~~-l~~~~~~~~sv~l~W~~~~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   83 (283)
T 1tdq_A            9 GGGIPVIDGPTQ-ILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEV   83 (283)
T ss_dssp             ---CCSSCCCEE-EEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEE
T ss_pred             cccccCCCCCcE-EEEEecCCCeEEEEEECCC----CceeEEEEEEEEecCCCCcEEEEeCCCCCEEEecCCCCCCEEEE
Confidence            344557777776 7788889999999999765    36889999996532 2333222 235567899999999999999


Q ss_pred             EEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEe
Q psy12426        382 RVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACI  460 (616)
Q Consensus       382 ~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~  460 (616)
                      +|.|.|..|.+...    ...+.   .+|.+|.++.+...+.+++.|+|.+|.    +.+.+|.|+|+..++ .+.. ..
T Consensus        84 ~V~a~~~~g~s~~~----~~~~~---t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~-~~  151 (283)
T 1tdq_A           84 SISAVRGTNESDAS----STQFT---TEIDAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHE-VL  151 (283)
T ss_dssp             EEEEEETTEECCCE----EEEEE---CCCCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTCCCCEE-EE
T ss_pred             EEEEECCCCCCCCe----eEEEE---CCCCCCCceEEEecCCCeEEEEecCCC----CCccEEEEEEEeCCCCcceE-EE
Confidence            99999988876432    22332   467888899999999999999999865    258999999998776 4433 33


Q ss_pred             ecCC---ccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCee
Q psy12426        461 VPAN---ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFV  537 (616)
Q Consensus       461 ~~~~---~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~  537 (616)
                      +...   ...++|.+|.|++.|.|+|+|.|..|.|++..    ...                                  
T Consensus       152 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~----~~~----------------------------------  193 (283)
T 1tdq_A          152 VPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPAT----MNA----------------------------------  193 (283)
T ss_dssp             EECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCEE----EEE----------------------------------
T ss_pred             CCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcceE----EEe----------------------------------
Confidence            4444   78999999999999999999999988775332    111                                  


Q ss_pred             eeccccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCC
Q psy12426        538 LDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG  601 (616)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~  601 (616)
                                      .+.+.+|.++.+...+.+++.|+|++|    ++.|.+|+|.|+..++.
T Consensus       194 ----------------~t~~~~P~~l~~~~~~~~sv~l~W~~p----~~~i~~Y~v~~~~~~~~  237 (283)
T 1tdq_A          194 ----------------RTELDSPRDLMVTASSETSISLIWTKA----SGPIDHYRITFTPSSGI  237 (283)
T ss_dssp             ----------------ECCCCCCEEEEEEEECSSCEEEEEECC----CSCCSEEEEEEECSSSC
T ss_pred             ----------------cCCCCCCCccEEeEecCCEEEEEEeCC----CCcccEEEEEEEcCCCC
Confidence                            134567788888888999999999987    48899999999976653

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.91  E-value=2.2e-22  Score=211.94  Aligned_cols=298  Identities=10%  Similarity=0.043  Sum_probs=186.7

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeee-cCCeeeeeeCCee---------------------------------eee-
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGE-PVPHVDWRAGGNP---------------------------------LNL-   45 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~---------------------------------l~~-   45 (616)
                      +|.+. ..+.++.+.+|+.+.|.|.+.|. |.+.|.|+|++..                                 |.+ 
T Consensus       112 ~p~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~  190 (585)
T 2ocw_A          112 GPGLL-NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN  190 (585)
T ss_pred             Ccccc-CCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEc
Confidence            46665 45889999999999999998865 5578999998742                                 222 


Q ss_pred             ------ccceEEEeecCCCC-------------Cc------e--eEeeeccCC-c---cc--ee-ecccc----------
Q psy12426         46 ------RPIWEKCAQTEGDT-------------PK------G--KVLDLIEGN-H---PI--WE-KCAQT----------   81 (616)
Q Consensus        46 ------~G~Y~C~a~n~~~~-------------~~------~--~v~~~~~~~-~---p~--w~-~~~~~----------   81 (616)
                            +|.|+|.|.|..+.             |.      +  ..+.|..++ .   +.  |. +++..          
T Consensus       191 ~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~  270 (585)
T 2ocw_A          191 QLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGK  270 (585)
T ss_pred             cCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCc
Confidence                  89999999998664             11      1  122332222 2   22  64 55521          


Q ss_pred             -----C--------CCCC--ceEecCcccCCeEEEEEEEEcCCCCCCCCCC---CCcce----eecCCCceee-------
Q psy12426         82 -----E--------GDTP--KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP---TAPHI----ARAKKGKCYH-------  132 (616)
Q Consensus        82 -----~--------~~~~--~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~---~~~~~----~~~~~p~~~~-------  132 (616)
                           .        ...+  .|.|.++...|.|.|.|.|.|. |.......   ..+..    .....|..+.       
T Consensus       271 ~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v  349 (585)
T 2ocw_A          271 RAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSV  349 (585)
T ss_pred             CCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcceEEEeCCcE
Confidence                 0        0022  6999999999999999999995 43331100   00000    0011122221       


Q ss_pred             -----eecCccccc----EEEEeec-cCccccccc---------CCCceEecccCCCCCeEEeecccCCCeEEEEEEEEe
Q psy12426        133 -----LVGTLLKDS----IYEQLKR-SGLFDQFHL---------CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  193 (616)
Q Consensus       133 -----~~g~p~~~~----~~~~~~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n  193 (616)
                           ..|.|.+.+    +|++  . +|.......         .++.............|.|.++..+|.|.|+|.| |
T Consensus       350 ~l~C~~~~~p~p~i~~w~~W~~--~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n  426 (585)
T 2ocw_A          350 AVLCPYNRKESKSIKYWCLWEG--AQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-N  426 (585)
T ss_pred             EEEEecCCCCCccEEEEEEEEc--cCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-c
Confidence                 126777765    4554  2 332100000         1111111111122234999999999999999999 7


Q ss_pred             CCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEe----eecCceeEEEECCeeecccCc-------
Q psy12426        194 KGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI----GEPIPTKEWLCNDITIISKDR-------  262 (616)
Q Consensus       194 ~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~----~~p~~~~~W~~~~~~~~~~~~-------  262 (616)
                      ..|.....     +.+.....+|.+..  +....+..|+.+.|.|.+.    +.|.+.+.|++++..+.....       
T Consensus       427 ~~g~~~~~-----~~l~V~~~~p~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~  499 (585)
T 2ocw_A          427 GDTLWRTT-----VEIKIIEGEPNLKV--PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAF  499 (585)
T ss_pred             CCCcccee-----EEEEEecCcccccc--CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcce
Confidence            77654321     33322233455432  5678899999999999997    678889999999987653321       


Q ss_pred             EEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee-eEEEEEecCC
Q psy12426        263 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLDIP  310 (616)
Q Consensus       263 ~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~-~~~l~v~~~p  310 (616)
                      ..+...+....|.|.++...|.|.|+|.|.|..|.... .+.|.|..+|
T Consensus       500 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          500 VNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             EEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            12222344569999999999999999999999987654 4788888776

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.90  E-value=2e-24  Score=210.42  Aligned_cols=263  Identities=13%  Similarity=0.109  Sum_probs=119.4

Q ss_pred             CCCceEecCCCeEEEEEEEeee-cCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGE-PVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      .++++.+.+|+.|.|.|.+.|. |.|.|+|+|+|..+...++|.-                                ...
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~--------------------------------~~~   61 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV--------------------------------GPQ   61 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe--------------------------------ccc
Confidence            4889999999999999999887 6789999999998875444321                                245


Q ss_pred             ceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcce--------------------------------------eecCCC
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI--------------------------------------ARAKKG  128 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~--------------------------------------~~~~~p  128 (616)
                      .|.|.++...|.|.|+|.|.|. |.........+..                                      +.....
T Consensus        62 ~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~  140 (334)
T 1ry7_B           62 RLQVLNASHEDSGAYSCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANT  140 (334)
T ss_dssp             ----------------------------------------------------------CCCCSCCTTCCCCEEEEETTCC
T ss_pred             eEEEeecccccCEEEEEEEEeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCc
Confidence            8899999999999999999998 5433221111000                                      000000


Q ss_pred             ceee--eecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCC
Q psy12426        129 KCYH--LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP  206 (616)
Q Consensus       129 ~~~~--~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~  206 (616)
                      ..+.  ..|.|.+.+.|++  ++..+.   ...... ..........|.|.++...|.|.|+|.|.|..|.....   ..
T Consensus       141 v~l~C~~~g~p~~~v~W~~--~~~~~~---~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~---~~  211 (334)
T 1ry7_B          141 VRFRCPAAGNPTPSISWLK--NGREFR---GEHRIG-GIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT---YT  211 (334)
T ss_dssp             EEEECCCCCSSCCEEECCB--TTBCCC---TTSSTT-CCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEE---EE
T ss_pred             EEEEEEccCCCCCeEEEEE--CCEECc---cccccc-ceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEE---EE
Confidence            1111  1277888899998  533322   111110 11223455689999999999999999999988763321   12


Q ss_pred             EEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE----CCeeecccCc--EEEEec-------CCce
Q psy12426        207 HIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC----NDITIISKDR--FKIVND-------DKST  272 (616)
Q Consensus       207 ~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~----~~~~~~~~~~--~~~~~~-------~~~~  272 (616)
                      +.+.. ...+|.+....+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+..+..  +.+...       ....
T Consensus       212 l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (334)
T 1ry7_B          212 LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE  291 (334)
T ss_dssp             EEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCC
T ss_pred             EEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCcccccccccc
Confidence            22222 12345554445577889999999999999999999999999    6665543322  111111       1124


Q ss_pred             EEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCC
Q psy12426        273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSP  312 (616)
Q Consensus       273 ~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~  312 (616)
                      .|.|.++...|.|.|+|.|.|..|....++.|.|...|.+
T Consensus       292 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  331 (334)
T 1ry7_B          292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE  331 (334)
T ss_dssp             CEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred             EEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence            7999999999999999999999999999999999876643

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.90  E-value=3.5e-22  Score=178.29  Aligned_cols=192  Identities=37%  Similarity=0.643  Sum_probs=159.3

Q ss_pred             ecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc-cccceEEeccccCCCeEEEEEEE
Q psy12426        307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-VSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       307 ~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      ..+|.+|.+ +.+.....+.+.|+|.++...++..+..|.|+++..+...|..... .....+.+.+|.+++.|.|+|.|
T Consensus         3 ~~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a   81 (197)
T 3lpw_A            3 MDTPGPPQD-LKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLA   81 (197)
T ss_dssp             CCSCCCCEE-EEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEEEEECSSEEEECCCCTTCEEEEEEEE
T ss_pred             CCCCCCCCC-cEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEeecCCCccEEEEcCCCCCCEEEEEEEE
Confidence            356777776 7777888999999999887666777999999999887777766543 45678999999999999999999


Q ss_pred             EecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCC
Q psy12426        386 VNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPAN  464 (616)
Q Consensus       386 ~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~  464 (616)
                      .|..|.+.++......+.   ..+|.+|.++.+...+.+++.|+|.+|..+++..+.+|.|+|+..+. .|.....  ..
T Consensus        82 ~~~~g~~~~s~~~~~~t~---~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~  156 (197)
T 3lpw_A           82 ENEYGIGLPAETAESVKA---SERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCAT--VK  156 (197)
T ss_dssp             EETTEECCCEECSSCEES---CCCCCCCSCEEEEEECSSCEEEEECCCSCCTTSCCCEEEEEEEETTCSCCEEEEE--ES
T ss_pred             EcCccccCCCCCccceec---CCCCCCCcccEEEeccCCeEEEEecCCCcCCCCcccEEEEEEEeCCCCceEEeec--cc
Confidence            999998877544444433   46788899999999999999999998877776679999999998776 6666543  34


Q ss_pred             ccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEec
Q psy12426        465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       465 ~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~  504 (616)
                      ...+++.+|.|++.|.|+|+|.|..|.|++|..+..++.+
T Consensus       157 ~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~~v~~~  196 (197)
T 3lpw_A          157 VTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK  196 (197)
T ss_dssp             SSEEEECCCCTTCEEEEEEEEEETTEECCCEECSSCEECC
T ss_pred             ccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCcccEecC
Confidence            7789999999999999999999999999999888776653

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.90  E-value=8.7e-23  Score=183.85  Aligned_cols=188  Identities=20%  Similarity=0.296  Sum_probs=150.6

Q ss_pred             EEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc-----cccceEEeccccCCCe
Q psy12426        304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-----VSGTYTRAENLIEGHD  378 (616)
Q Consensus       304 l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~-----~~~~~~~i~~L~~~~~  378 (616)
                      +.....|.+|.+ +.+..... ++.|+|.+|...++.++.+|.|+++..+...|.....     .....+.+.+|.+++.
T Consensus         3 l~~~~~P~~P~~-~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   80 (209)
T 2vkw_A            3 LAQADTPSSPSI-DQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETT   80 (209)
T ss_dssp             --CCCCCCCCEE-EEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCE
T ss_pred             ccccCCCcCCcc-cEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCe
Confidence            344567777776 66666655 6899999987666777999999999887778866543     2245899999999999


Q ss_pred             EEEEEEEEecCcCCCCccccCCEEccCCCC-CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceE
Q psy12426        379 YNFRVKAVNKIGESLPLVCQSPITAKDPFG-RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK  457 (616)
Q Consensus       379 y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~-~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~  457 (616)
                      |.|+|.|.|..|.+.++   ..+.+.+... +|.+|.++.+...+.+++.|+|.+| .+++++|.+|.|+|+...+.|..
T Consensus        81 Y~~~V~A~n~~G~~~~s---~~~~~~T~~~~~P~~P~~~~~~~~~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~~~~~~~~  156 (209)
T 2vkw_A           81 YAVRLAALNGKGLGEIS---AASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRALSSEWKP  156 (209)
T ss_dssp             EEEEEEEEETTEECCCC---CCEEEECCCSCSCCCCEEEEEECTTSSCEEEEEECC-CCTTSCCCEEEEEEEETTSCCCC
T ss_pred             EEEEEEEEcCCcccCCc---ccccccccCCCCCCCCcccccccccCCeEEEEEECc-ccCCCCCceEEEEEECCCCCCce
Confidence            99999999999988764   3444444334 6888888888888999999999987 45566899999999984447776


Q ss_pred             eEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCC
Q psy12426        458 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA  497 (616)
Q Consensus       458 ~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~  497 (616)
                      ..........++|.+|.|++.|.|+|+|.|..|.|++|..
T Consensus       157 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~  196 (209)
T 2vkw_A          157 EIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHF  196 (209)
T ss_dssp             CEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEE
T ss_pred             eeecCCCccEEEecCCCCCCEEEEEEEEEeCCccCCcchh
Confidence            6666777789999999999999999999999999998864

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.90  E-value=5.9e-23  Score=197.90  Aligned_cols=260  Identities=10%  Similarity=0.030  Sum_probs=171.5

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC-----eeeeeeCCeeeee-------------ccceEEEeecCCCCCceeEeee
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP-----HVDWRAGGNPLNL-------------RPIWEKCAQTEGDTPKGKVLDL   67 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p-----~v~W~~~~~~l~~-------------~G~Y~C~a~n~~~~~~~~v~~~   67 (616)
                      .+.|.++.+..|++|+|.|.+.+.|.|     .|+|+|++.....             .++|.....             
T Consensus         4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-------------   70 (313)
T 4fqp_A            4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAA-------------   70 (313)
T ss_dssp             EECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSC-------------
T ss_pred             EcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEee-------------
Confidence            456889999999999999999998877     4899999875431             111111100             


Q ss_pred             ccCCccceeeccccCCCCCceEecCcccCCeEEEEEEEEcCC-CCCCCCCCCCcceeecCCCc----------------e
Q psy12426         68 IEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG-GPGEPSDPTAPHIARAKKGK----------------C  130 (616)
Q Consensus        68 ~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~-g~~~~~~~~~~~~~~~~~p~----------------~  130 (616)
                                .........+|.|.+++..|+|.|+|.+.+.. |.....  ..  ......|.                .
T Consensus        71 ----------~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~--~~--l~v~~~P~~~~~~~~~~~~~~~~~~  136 (313)
T 4fqp_A           71 ----------RLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVD--IW--LRVLAKPQNTAEVQKVQLTGEPVPM  136 (313)
T ss_dssp             ----------CTTSCCCBCCEEECSCCGGGCEEEEEEEECSSSCEEEEE--EE--ECCBBCCEEEEEECCBCCCSSCEEE
T ss_pred             ----------ccCCcccceEEEECcCChhhCEEEEEEEeeccCcceeee--ee--eeeccCCcceecccceEeecCceEE
Confidence                      00002234679999999999999999987543 322111  00  00111111                0


Q ss_pred             ee--ee-cCcccccEEEEeeccCcccccccCCCceEecccCCC----CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCC
Q psy12426        131 YH--LV-GTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD----TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP  203 (616)
Q Consensus       131 ~~--~~-g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~  203 (616)
                      +.  .. |.|.+.+.|++  ++..+.    .  .........+    ...|.|.....+|.|.|+|.|.|..+...... 
T Consensus       137 ~~C~~~~~~P~~~i~W~~--~~~~~~----~--~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~-  207 (313)
T 4fqp_A          137 ARCVSTGGRPPAQITWHS--DLGGMP----N--TSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLL-  207 (313)
T ss_dssp             EEEEEEEEBSCCEEEEEE--TTCCEE----E--EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEE-
T ss_pred             EEEEccCccCCcEEEeec--CCcccc----c--cceeeeecccccccceeeeecccccccCeeEEEEEEccCcCcccee-
Confidence            00  11 67888999998  532221    0  0111111111    12478888899999999999999877644221 


Q ss_pred             CCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeecccCcEEEEecCCceEEEecCCCCC
Q psy12426        204 TAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG  282 (616)
Q Consensus       204 ~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~  282 (616)
                        .+.+. ...+|.+.........+..|+.+.|.|.+.|.|.| .+.|++++..+....   ....   ..|.|.++...
T Consensus       208 --~~~l~-V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~---~~~~---~~L~i~~v~~~  278 (313)
T 4fqp_A          208 --TVNLT-VYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA---VAQG---AQLLIRPVDKP  278 (313)
T ss_dssp             --EEECC-BCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---EEET---TEEEECCCSSC
T ss_pred             --eeecc-cccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce---EEeC---CEEEECcCChh
Confidence              11111 23456665555566677788999999999999999 699999998775432   2222   28999999999


Q ss_pred             CcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy12426        283 DSGIYTLAVKNSWGTDKGTAKVTVLDIP  310 (616)
Q Consensus       283 ~~g~y~c~a~n~~g~~~~~~~l~v~~~p  310 (616)
                      |+|.|+|.|.|..|....++.|.|...|
T Consensus       279 d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  306 (313)
T 4fqp_A          279 INTTLICNVTNALGARQAELTVQVKEGP  306 (313)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred             hCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence            9999999999999999888889888654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.90  E-value=7.4e-24  Score=203.82  Aligned_cols=277  Identities=14%  Similarity=0.108  Sum_probs=172.3

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEee-ecCCeeeeeeCCeeeee-----ccceEEEeecCCCCCceeEeeeccCCccce
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIG-EPVPHVDWRAGGNPLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIW   75 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w   75 (616)
                      |.+.   +.++++.+|++|+|.|.+.+ .|.+.|+|+|++.....     ...|.-...   +...+++.          
T Consensus         2 Pv~v---~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~----------   65 (308)
T 4fom_A            2 PIIV---EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQ---GEYQGRVL----------   65 (308)
T ss_dssp             CSBC---CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEEC---TTTTTTEE----------
T ss_pred             CEEc---CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceec---CcccceEE----------
Confidence            5554   34688999999999999764 45567999998765432     000000000   00001111          


Q ss_pred             eeccccCCCCCceEecCcccCCeEEEEEEEEcCC-CCCCCCCCCC----cceeecCCCc--------eee-----eecCc
Q psy12426         76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG-GPGEPSDPTA----PHIARAKKGK--------CYH-----LVGTL  137 (616)
Q Consensus        76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~-g~~~~~~~~~----~~~~~~~~p~--------~~~-----~~g~p  137 (616)
                        .........+|.|.++...|+|.|+|.|.|.. |.........    ........|.        .+.     ..|.|
T Consensus        66 --~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P  143 (308)
T 4fom_A           66 --FKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKP  143 (308)
T ss_dssp             --ESCCSSSBCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBS
T ss_pred             --eeccCCCceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcC
Confidence              00112335689999999999999999999863 3322210000    0000001111        111     12778


Q ss_pred             ccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCc
Q psy12426        138 LKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPY  217 (616)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~  217 (616)
                      .+.+.|++  +++.+.   . ...............|.|..+..+|.|.|+|.|.|..|....+.   .+.+. ...+|.
T Consensus       144 ~~~i~W~~--~~~~~~---~-~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~---~~~l~-V~~~P~  213 (308)
T 4fom_A          144 VAHIDWEG--DLGEME---S-TTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRY---SFILD-IQYAPE  213 (308)
T ss_dssp             CCEEEECC--CSSBCC---E-EEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEE---EEECC-CCEEEE
T ss_pred             CceEEEEE--CCcccc---c-ccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEE---eEEEE-EecCCe
Confidence            89999998  533322   0 00000000001123688999999999999999999877644321   12111 234566


Q ss_pred             eeccCCcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        218 INRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       218 ~~~~~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      +.........+..|+.+.|.|.+.|.|.| .+.|++++..+.....     ..+...+.|.++...|+|.|+|.|.|..|
T Consensus       214 ~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G  288 (308)
T 4fom_A          214 VSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL-----ASDNTLHFVHPLTFNYSGVYICKVTNSLG  288 (308)
T ss_dssp             ECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB-----CSTTEEECCSCCCSCCCSEEEEEEEETTE
T ss_pred             eEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE-----EcCCeEEEECCCChhhCEEEEEEEEeCCC
Confidence            55455556677788999999999999988 6999999887654321     12334677899999999999999999999


Q ss_pred             CceeeEEEEEecCCC
Q psy12426        297 TDKGTAKVTVLDIPS  311 (616)
Q Consensus       297 ~~~~~~~l~v~~~p~  311 (616)
                      ....++.|.|..+|.
T Consensus       289 ~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          289 QRSDQKVIYISDPPH  303 (308)
T ss_dssp             EEEEEEECCEECCC-
T ss_pred             cEEEEEEEEEEcCCC
Confidence            999999999988775

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.90  E-value=5.4e-23  Score=202.65  Aligned_cols=314  Identities=8%  Similarity=-0.049  Sum_probs=193.8

Q ss_pred             ceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEe
Q psy12426         11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKV   90 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i   90 (616)
                      .+.+.+|++|.|.|.+.|.|.|.|+|+|++..+...+.+....... .....++...          ..........|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~-~~~~~r~~~~----------~~~~~~~~~~L~I   71 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGP-SKLNDRADSR----------RSLWDQGNFPLII   71 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECS-STTGGGEECC----------HHHHHTTCCCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCC-cccccceeee----------eccccCCeEEEEE
Confidence            4678999999999999999999999999997543211111110000 0000000000          0000112567999


Q ss_pred             cCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCC--------ceee--eecCcccccEEEEeeccCcccccccCCC
Q psy12426         91 LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKG--------KCYH--LVGTLLKDSIYEQLKRSGLFDQFHLCPI  160 (616)
Q Consensus        91 ~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p--------~~~~--~~g~p~~~~~~~~~~~~~~~~~~~~~~~  160 (616)
                      .++...|+|.|+|.|.|..+....    .+..+...+.        ..+.  ..|.|.+.+.|++  +++.         
T Consensus        72 ~~v~~~D~G~Y~C~~~n~~~~~~l----~V~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~--~~~~---------  136 (363)
T 1wio_A           72 KNLKIEDSDTYICEVEDQKEEVQL----LVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRS--PRGK---------  136 (363)
T ss_dssp             CSCCGGGCEEEEEEETTEEEEEEE----EEEEEEESSCSSEESBSCEEEEEECCTTCCCCEEEEC--SSSC---------
T ss_pred             CCCCHHHCEEEEEEEEECCCcEEE----EEEeCCCCCceEEecCCCEEEEEEcCCCCCCeEEEEc--CCCc---------
Confidence            999999999999999987552111    1111111111        1111  2277888999998  4211         


Q ss_pred             ceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE
Q psy12426        161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV  240 (616)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~  240 (616)
                      .      ......|.|.++..+|.|.|+|.|.|..+.....   ..+.+.   ..|..    +....+.+|+.+.|.|.+
T Consensus       137 ~------~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~---~~l~v~---~~p~~----~~~~~~~~G~~v~l~C~~  200 (363)
T 1wio_A          137 N------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK---IDIVVL---AFQKA----SSIVYKKEGEQVEFSFPL  200 (363)
T ss_dssp             E------EEESSEEEECSBCGGGCEECEEEEEETTEEEEEC---CEECEE---CCSCS----EEEEEEETBCCEEEECCC
T ss_pred             c------cccceEEEEeeCChhcCCEEEEEEecCCCeEEEE---EEEEEe---cCCCC----CCceEEecCCEEEEEEEE
Confidence            1      1234589999999999999999999875442211   112221   22222    255778899999999988


Q ss_pred             ee-----ecCceeEEEECCeeecc--------cCcEEEEe----------cCCceEEEecCCCCCCcEEEEEEEEcC--C
Q psy12426        241 IG-----EPIPTKEWLCNDITIIS--------KDRFKIVN----------DDKSTKLKVFDSKRGDSGIYTLAVKNS--W  295 (616)
Q Consensus       241 ~~-----~p~~~~~W~~~~~~~~~--------~~~~~~~~----------~~~~~~l~i~~l~~~~~g~y~c~a~n~--~  295 (616)
                      .+     .|.+.+.|++++..+..        +.++.+..          .+....|.|.++...|.|.|+|.|.|.  .
T Consensus       201 ~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~  280 (363)
T 1wio_A          201 AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKT  280 (363)
T ss_dssp             CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTT
T ss_pred             ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhc
Confidence            87     78899999999987654        44444432          222459999999999999999999999  8


Q ss_pred             CCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccC
Q psy12426        296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIE  375 (616)
Q Consensus       296 g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~  375 (616)
                      |.....+.+.|...+             +..+.|.|......  .+..  .+.|...+...      .....+.|..+..
T Consensus       281 g~~~~~~~l~V~~v~-------------g~~~~l~C~~~g~p--~p~~--~i~W~~~~~~~------~~~~~l~i~~v~~  337 (363)
T 1wio_A          281 GKLHQEVNLVVMRAT-------------QLQKNLTCEVWGPT--SPKL--MLSLKLENKEA------KVSKREKAVWVLN  337 (363)
T ss_dssp             CCEEEEEEEEEEEEC-------------CCSSSEEEEEESSC--CTTC--CEEEECSSSSC------SEEESSSEEEESS
T ss_pred             CeEEEEEeEEEEEec-------------CCCeeEEEEEcccc--CCCc--cEEEEeCCCce------eeeeeeeeeeecc
Confidence            988888888776433             33344444432111  0110  11121111100      1123356678888


Q ss_pred             CCeEEEEEEEEecC
Q psy12426        376 GHDYNFRVKAVNKI  389 (616)
Q Consensus       376 ~~~y~~~v~a~n~~  389 (616)
                      .+.+.|+|.|.|..
T Consensus       338 ~d~G~Y~C~a~~~~  351 (363)
T 1wio_A          338 PEAGMWQCLLSDSG  351 (363)
T ss_dssp             CCSEEEEEEECSSS
T ss_pred             ccceeEEEEEecCC
Confidence            89999999998643

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.89  E-value=1.4e-24  Score=236.94  Aligned_cols=374  Identities=10%  Similarity=0.048  Sum_probs=42.5

Q ss_pred             ccCCCCCCceEecCCCeEEEEEEEee--ecCCeeeeeeCCeee-------------------------ee-------ccc
Q psy12426          3 HIDRRHLGDIKLSAGTTLKFDANIIG--EPVPHVDWRAGGNPL-------------------------NL-------RPI   48 (616)
Q Consensus         3 ~i~~~~~~~~~v~~g~~v~l~C~~~g--~P~p~v~W~~~~~~l-------------------------~~-------~G~   48 (616)
                      .+...++..+.+.+|+.+.|.|.+.|  .|.+.|+|++++..+                         .+       +|.
T Consensus       225 ~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  304 (772)
T 3v2a_R          225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL  304 (772)
T ss_dssp             EEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSE
T ss_pred             eeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeE
Confidence            34445556688999999999999998  456689999987741                         11       999


Q ss_pred             eEEEeecCCCCCce-----------------------------eEeeeccCCccc----eeeccccCC------CCCceE
Q psy12426         49 WEKCAQTEGDTPKG-----------------------------KVLDLIEGNHPI----WEKCAQTEG------DTPKGK   89 (616)
Q Consensus        49 Y~C~a~n~~~~~~~-----------------------------~v~~~~~~~~p~----w~~~~~~~~------~~~~l~   89 (616)
                      |+|.|.|..+....                             ..+.|...|.|.    |.+++....      ....|.
T Consensus       305 Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~  384 (772)
T 3v2a_R          305 YTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLT  384 (772)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCC-------------------------------------------------------
T ss_pred             EEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEE
Confidence            99999998664100                             011222224443    998877632      237889


Q ss_pred             ecCcccCCeEEEEEEEEcCCCCCCCCCCCCcce-eec-------CCCc-------eee----eecCcccc-cEEEEeecc
Q psy12426         90 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI-ARA-------KKGK-------CYH----LVGTLLKD-SIYEQLKRS  149 (616)
Q Consensus        90 i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~-~~~-------~~p~-------~~~----~~g~p~~~-~~~~~~~~~  149 (616)
                      |.++...|.|.|+|.|.|..|....+....... ..+       ..|.       .+.    ..|.|.+. +.|++  ++
T Consensus       385 i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~--~~  462 (772)
T 3v2a_R          385 IMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYW--QL  462 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEE--cC
Confidence            999999999999999999988665432111110 000       0110       111    22777775 99988  31


Q ss_pred             Cc---cc--------ccccCCCceEe-------------------cccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCC
Q psy12426        150 GL---FD--------QFHLCPIWEKC-------------------AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  199 (616)
Q Consensus       150 ~~---~~--------~~~~~~~~~~~-------------------~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  199 (616)
                      +.   +.        .......|...                   .........|.|.++  .|.|.|+|.|.|..|...
T Consensus       463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~  540 (772)
T 3v2a_R          463 EEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGE  540 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccc
Confidence            10   00        00000011100                   000111246667766  689999999999998654


Q ss_pred             CCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEE--------------
Q psy12426        200 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI--------------  265 (616)
Q Consensus       200 ~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~--------------  265 (616)
                      ..   ..+.+.   .+|.+... + ...+.+|+.+.|.|.+.+.|.+.+.|++++..+........              
T Consensus       541 ~~---~~l~V~---~~p~i~~~-p-~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  612 (772)
T 3v2a_R          541 RV---ISFHVT---RGPEITLQ-P-DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKL  612 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ee---EEEEEE---CCceeecc-C-CcccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeec
Confidence            32   112222   24544322 1 24577899999999999999999999998876543221111              


Q ss_pred             ------EecCCceEEEecCCCCCCcEEEEEEEEcCCCCce--eeEEEEE--ecCCCCCCCCccceeecCCeEEEEEeCCC
Q psy12426        266 ------VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK--GTAKVTV--LDIPSPPEGPLKPSNITKSSCNLEWRAPR  335 (616)
Q Consensus       266 ------~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~--~~~~l~v--~~~p~~p~~~~~~~~~~~~~~~l~W~~~~  335 (616)
                            ........|.|.++...|.|.|+|.|.|..|...  ....+.+  ..+|..-..+.......+..+.|.|....
T Consensus       613 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g  692 (772)
T 3v2a_R          613 NATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASG  692 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCc
Confidence                  1112234599999999999999999999655432  2334444  33443322211223345677888887532


Q ss_pred             CCCCCceEEEEEEEEeCCCCCE---EEccccccceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426        336 DDGGTDILHYVVEKMDMETGRW---VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       336 ~~~~~~i~~y~v~~~~~~~~~~---~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~  394 (616)
                      .    +...  +.|...+....   ..........+.|.++...+.+.|+|.|.|..|....
T Consensus       693 ~----P~p~--v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  748 (772)
T 3v2a_R          693 N----PPPQ--IMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV  748 (772)
T ss_dssp             --------------------------------------------------------------
T ss_pred             c----CCCe--EEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeE
Confidence            2    1112  22221111000   0001122457889999999999999999999997654

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.89  E-value=4.2e-22  Score=192.07  Aligned_cols=255  Identities=12%  Similarity=0.096  Sum_probs=175.0

Q ss_pred             CCceEecCCCeEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426          9 LGDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      ...+.|.+|+.+.|.|.. .|.|.|.|+|+|++..+...++|.-..                            ......
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~----------------------------~~~~~~   59 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVES----------------------------KGNKTK   59 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEE----------------------------ETTEEE
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEE----------------------------eCCEEE
Confidence            346789999999999985 578999999999999988666665542                            112358


Q ss_pred             eEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcc-----------------------eeec--CCCceee--ee-cCccc
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH-----------------------IARA--KKGKCYH--LV-GTLLK  139 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~-----------------------~~~~--~~p~~~~--~~-g~p~~  139 (616)
                      |.|.++...|.|.|+|.|.|..|..... .....                       ....  .....+.  .. |.|.+
T Consensus        60 L~I~~~~~~D~G~Y~C~~~n~~g~~~s~-~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~  138 (312)
T 2y23_A           60 MTFKDLGMDDLGIYSCDVTDTDGIASSY-LIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNA  138 (312)
T ss_dssp             EEESSCCGGGCEEEEEEESSSCCCCEEE-EECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSC
T ss_pred             EEECcCCccCCEEEEEEEEeCCCcEEEE-EEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCC
Confidence            9999999999999999999988854321 00000                       0000  0011111  22 67888


Q ss_pred             ccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEec---------
Q psy12426        140 DSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR---------  210 (616)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~---------  210 (616)
                      .+.|++  ++..+.   ....+............|.|.++..+|.|.|+|.|.+..+.....     +...         
T Consensus       139 ~v~W~~--~~~~i~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~-----~~~~~~~~~~~~~  208 (312)
T 2y23_A          139 KVNYIF--NEKEIF---EGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST-----VVLVGDVFKKLQK  208 (312)
T ss_dssp             EEEEEE--TTEEEC---SSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEE-----EEECTHHHHHHHH
T ss_pred             EEEEEE--CCEECe---eCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEE-----EEEcchhhhhhcc
Confidence            999998  533322   222233222222344569999999999999999997643332111     1110         


Q ss_pred             ---------cccCCCceeccCCcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeecccCcEEEEecCCceEEEecCCC
Q psy12426        211 ---------AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK  280 (616)
Q Consensus       211 ---------~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~  280 (616)
                               ....+|.+...  ....+..|+.+.|.|.+.+.|.+ .+.|++++..+..+.++.+.  +....|.|.++.
T Consensus       209 ~~~~~~~~~~~~~~p~~~~~--~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~  284 (312)
T 2y23_A          209 EAEFQRQEWIRKQGPHFVEY--LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFS  284 (312)
T ss_dssp             HHHHHHHHHHHHHSSEEEEE--EEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCS
T ss_pred             cccccccchhhccCCceeec--ceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCC
Confidence                     01123554321  23678899999999999999988 99999999998766666554  335699999999


Q ss_pred             CCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        281 RGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       281 ~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      ..|.|.|+|.|.|..|....++.|.+
T Consensus       285 ~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          285 KKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             GGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             HHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            99999999999999999888877765

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.89  E-value=5.8e-23  Score=198.31  Aligned_cols=255  Identities=13%  Similarity=0.046  Sum_probs=174.8

Q ss_pred             CCceEecCCCeEEEEEEEeeec-CCeeeeeeCCeeeee----ccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEP-VPHVDWRAGGNPLNL----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~l~~----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      ...+.|.+|+.|.|.|.+.|.| .|.|+|+|+|..+..    ..++                                ..
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~--------------------------------~~   59 (315)
T 1itb_B           12 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRI--------------------------------HQ   59 (315)
T ss_dssp             CCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSS--------------------------------EE
T ss_pred             ceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcE--------------------------------ec
Confidence            4477899999999999999988 889999999975432    1111                                11


Q ss_pred             CCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeec------------------CCCceee--e------ecCc
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA------------------KKGKCYH--L------VGTL  137 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~------------------~~p~~~~--~------~g~p  137 (616)
                      ....|.|.++...|.|.|+|.|.|..|.....  .....+..                  .....+.  .      .|.|
T Consensus        60 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~--~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p  137 (315)
T 1itb_B           60 HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK--ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNE  137 (315)
T ss_dssp             CSSBEECTTCCGGGCSCCEECCCSSSCCCCEE--CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTC
T ss_pred             cCCeEEECCCChhhCEEEEEEEeCCceEEEEE--EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCC
Confidence            13589999999999999999999988765433  11111100                  1111111  2      3678


Q ss_pred             ccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEE-eCCCCCCCCCCCCCEEe--ccccC
Q psy12426        138 LKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV-NKGGPGEPSDPTAPHIA--RAKKV  214 (616)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~-n~~g~~~~s~~~~~~~~--~~~~~  214 (616)
                      .+.+.|++  ++..+.  ......      ......|.|.++..+|.|.|+|.|. |..|..........+..  .....
T Consensus       138 ~~~i~W~k--~~~~l~--~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~  207 (315)
T 1itb_B          138 LPKLQWYK--DCKPLL--LDNIHF------SGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPT  207 (315)
T ss_dssp             CCCCEEEE--TTEECC--CCSSSE------EEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCC
T ss_pred             CCEEEEEE--CCEECC--CccceE------eecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCC
Confidence            88999998  533322  111111      1223489999999999999999999 77776421111111111  11245


Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEE------EEecC------CceEEEecCCCCC
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK------IVNDD------KSTKLKVFDSKRG  282 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~------~~~~~------~~~~l~i~~l~~~  282 (616)
                      +|.+.......+.+..|+.+.|.|.+.+.|.+.+.|++++..+.......      +....      ....|.|.++...
T Consensus       208 ~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  287 (315)
T 1itb_B          208 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR  287 (315)
T ss_dssp             CCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHH
Confidence            67775443334678899999999999999999999999999887543211      11111      1348999999999


Q ss_pred             C-cEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        283 D-SGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       283 ~-~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      | .|.|+|.|.|..|....++.|.+.
T Consensus       288 d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          288 FYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             GGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             HcCCceEEEEecCCCceeEEEEEEec
Confidence            9 999999999999999888888764

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.89  E-value=2.3e-21  Score=197.15  Aligned_cols=396  Identities=12%  Similarity=-0.014  Sum_probs=227.9

Q ss_pred             CCCceEecCCCeEEEEEEEeeecCCee-----eeeeCCeee--------e------eccceEEEeecCCCCCce--eEee
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEPVPHV-----DWRAGGNPL--------N------LRPIWEKCAQTEGDTPKG--KVLD   66 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P~p~v-----~W~~~~~~l--------~------~~G~Y~C~a~n~~~~~~~--~v~~   66 (616)
                      .|++..|.+|+.|.|.|.+.| |.|.+     .|+|++..+        .      ++| |+|.|.|..+....  .+..
T Consensus         5 ~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~~~~~l~i~~v~~d~g-Y~C~a~~~~~~~~~~~~l~V   82 (450)
T 1z7z_I            5 SPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQ-PMCYSNCPDGQSTAKTFLTV   82 (450)
T ss_dssp             ESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTTTEEEEEEEEECSCBC-CEEEEEETTEEEEEECEEEE
T ss_pred             CCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecCCCceEEEEEecccCCe-eEEEEeCCCCcceeEEEEEE
Confidence            378999999999999999999 99999     999997632        1      167 99999865432221  1111


Q ss_pred             eccCCccceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCccc---ccEE
Q psy12426         67 LIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLK---DSIY  143 (616)
Q Consensus        67 ~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~---~~~~  143 (616)
                      ..   .|......     .   .-..+..|+...+.|.+.                            |.+.+   .+.|
T Consensus        83 ~~---~P~~~~~~-----~---~~~~v~~G~~v~L~C~~~----------------------------g~~~~~~~~v~W  123 (450)
T 1z7z_I           83 YW---TPERVELA-----P---LPSWQPVGKNLTLRCQVE----------------------------GGAPRANLTVVL  123 (450)
T ss_dssp             EB---CCSEEEEC-----C---CCSEECTTSEEEEEEEEE----------------------------CCBCGGGEEEEE
T ss_pred             Ee---CCCcceec-----C---CCceEeeCCeEEEEEEec----------------------------CCCCCcCcEEEE
Confidence            10   11111000     0   001256789999999998                            65555   7899


Q ss_pred             EEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCC-----CCCCEEeccc-cCCCc
Q psy12426        144 EQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD-----PTAPHIARAK-KVSPY  217 (616)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~-----~~~~~~~~~~-~~~P~  217 (616)
                      ++  ++..+.   .     ...........|.|.++..+|.|.|+|.|.|..|......     ....+.+... ..+|.
T Consensus       124 ~k--~g~~l~---~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~  193 (450)
T 1z7z_I          124 LR--GEKELK---R-----EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQ  193 (450)
T ss_dssp             EE--TTEEEE---E-----EECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCE
T ss_pred             ee--CCEEee---c-----ccccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCE
Confidence            98  522221   0     0001122234899999999999999999999987532100     0011111111 23344


Q ss_pred             eeccCCcceEEEcCCeEEEEEEEeee-c--CceeEEEECCeeecccCcEEEEecCCceEEE-ecCCCCCCcE--EEEEEE
Q psy12426        218 INRDQLSDIKVRAGSNFEFDINVIGE-P--IPTKEWLCNDITIISKDRFKIVNDDKSTKLK-VFDSKRGDSG--IYTLAV  291 (616)
Q Consensus       218 ~~~~~~~~~~v~~g~~~~l~c~~~~~-p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~-i~~l~~~~~g--~y~c~a  291 (616)
                      +.    ....+..|+.+.|.|.+.+. |  .+.+.|++++..+..  ++...  +....+. ..++...|.|  .|+|.|
T Consensus       194 ~~----~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~--~~~~~--~~~~~~~~~~~v~~~d~G~~~Y~C~a  265 (450)
T 1z7z_I          194 LV----SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYG--NDSFSAKASVSVTAEDEGTQRLTCAV  265 (450)
T ss_dssp             EE----CCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC--EEEEE--TTEEEEEEEEECCGGGCEEEEEEEEE
T ss_pred             ec----CceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc--eEEec--CCceeEEEEEEeEhhhCCcEEEEEEE
Confidence            32    12678999999999999999 7  789999999988754  22222  2221221 2277899999  999999


Q ss_pred             EcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEec
Q psy12426        292 KNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAE  371 (616)
Q Consensus       292 ~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~  371 (616)
                      .|..|.......+.+...|.+...........+..+.|.|...   .. +    .+.| +  +...  ........+.|.
T Consensus       266 ~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~~---p~-p----~i~W-~--g~~~--~~~~~~~~L~i~  332 (450)
T 1z7z_I          266 ILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH---PR-A----KVTL-N--GVPA--QPLGPRAQLLLK  332 (450)
T ss_dssp             EETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC-----------------------------CCCCCEEEE
T ss_pred             ccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEEEEecC---CC-C----EeEE-C--CEEc--CCCCceEEEEEe
Confidence            9998888888888888755421111122455678899999864   11 1    1222 1  1111  011233468889


Q ss_pred             cccCCCeEEEEEEEEecCc-CCCCccccCCEEccCCC--CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEE
Q psy12426        372 NLIEGHDYNFRVKAVNKIG-ESLPLVCQSPITAKDPF--GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK  448 (616)
Q Consensus       372 ~L~~~~~y~~~v~a~n~~g-~~~~~~~s~~~~~~~~~--~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~  448 (616)
                      .+...+.+.|.|.|.|..+ .......+..+.+..+.  .....|.+  ........+.|....-..    +.-  .|.|
T Consensus       333 ~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~--~~~~~g~~~~l~C~~~g~----P~p--~i~W  404 (450)
T 1z7z_I          333 ATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGN--WTWPENSQQTPMCQAWGN----PLP--ELKC  404 (450)
T ss_dssp             CCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSE--EEEETTCEECCCCCCEEE----SCC--EEEE
T ss_pred             cCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCc--eeEcCCCeEEEEEecccC----CCC--cEEE
Confidence            9988889999999997655 21111011122221100  01111222  233345667776653111    111  2344


Q ss_pred             eeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCC
Q psy12426        449 KPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPG  492 (616)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g  492 (616)
                      ...+.   .  ..+. ...+   .+.....-.|++.|.|..|..
T Consensus       405 ~~~g~---~--~~~~-g~~~---~v~~~d~G~Y~C~a~N~~G~~  439 (450)
T 1z7z_I          405 LKDGT---F--PLPI-GESV---TVTRDLEGTYLCRARSTQGEV  439 (450)
T ss_dssp             EETTT---E--ECCT-TSCE---ECCGGGCEEEEEEEEETTEEE
T ss_pred             EECCc---c--cCCC-CCeE---eEehhhCeEEEEEEEeCCCce
Confidence            44442   0  1111 1122   244556678899999998864

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.89  E-value=1.3e-21  Score=176.88  Aligned_cols=190  Identities=20%  Similarity=0.311  Sum_probs=151.2

Q ss_pred             CCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCEEEccc-------------cccceEEeccccCC
Q psy12426        311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMGD-------------VSGTYTRAENLIEG  376 (616)
Q Consensus       311 ~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~~-------------~~~~~~~i~~L~~~  376 (616)
                      .+|.+ +.+..++.+++.|+|.++...+ ..+.+|.|+++..+. ..|.....             .....+.+.+|.++
T Consensus         3 ~pP~~-~~~~~~~~~sv~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   80 (214)
T 2ibg_A            3 YPPTP-PNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQ   80 (214)
T ss_dssp             CCCCC-CEEEEEETTEEEEEEEEECCSS-CCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTT
T ss_pred             CCCCC-CEeeEecCCEEEEEEECCCCCC-CCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCC
Confidence            45555 5667788999999999877654 589999999988543 67876653             24567899999999


Q ss_pred             CeEEEEEEEEecCcCCCCccccCCEEccC--CCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-
Q psy12426        377 HDYNFRVKAVNKIGESLPLVCQSPITAKD--PFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-  453 (616)
Q Consensus       377 ~~y~~~v~a~n~~g~~~~~~~s~~~~~~~--~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-  453 (616)
                      +.|.|+|.|.|..|.+..+..+..+.+..  +..+|.+|.++.+...+.+++.|+|.+|..+.++.+.+|.|+|+..+. 
T Consensus        81 t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~  160 (214)
T 2ibg_A           81 HTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSA  160 (214)
T ss_dssp             CEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCC
T ss_pred             CEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCCccCCCCcceEEEEEEECCCC
Confidence            99999999999999887766555555432  233566788888888899999999998764456679999999998764 


Q ss_pred             -CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEE
Q psy12426        454 -PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       454 -~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~  502 (616)
                       .|............++|.+|.|++.|.|+|+|.|..|.|++|......|
T Consensus       161 ~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T  210 (214)
T 2ibg_A          161 GEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT  210 (214)
T ss_dssp             SCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEEC
T ss_pred             cceEEeeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEe
Confidence             6777666555678999999999999999999999999999987655444

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.89  E-value=2.3e-23  Score=216.14  Aligned_cols=294  Identities=10%  Similarity=-0.022  Sum_probs=171.0

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeee-CCeeeee---------------------cc-ceEEEeecCC
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRA-GGNPLNL---------------------RP-IWEKCAQTEG   57 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~-~~~~l~~---------------------~G-~Y~C~a~n~~   57 (616)
                      ||.+. ..+.++.+.+|+.+.|.|.+.|.|.|.|+|+| +|..+..                     +| .|+|.|.|..
T Consensus       114 p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~  192 (524)
T 2ec8_A          114 PAKLF-LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEG  192 (524)
T ss_dssp             SSCSB-CCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC---
T ss_pred             CCccc-ccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEECC
Confidence            45555 45778889999999999999998879999998 7765521                     89 9999999875


Q ss_pred             CCCc-----------------------e--------eEeeeccCCccc-----eeeccccC----------------CCC
Q psy12426         58 DTPK-----------------------G--------KVLDLIEGNHPI-----WEKCAQTE----------------GDT   85 (616)
Q Consensus        58 ~~~~-----------------------~--------~v~~~~~~~~p~-----w~~~~~~~----------------~~~   85 (616)
                      +...                       .        ..+.|...|.|.     |.+.+...                ...
T Consensus       193 ~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (524)
T 2ec8_A          193 KSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQ  272 (524)
T ss_dssp             -CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEE
T ss_pred             ceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceE
Confidence            4310                       0        111221113332     99887661                123


Q ss_pred             CceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCc---cee--ecCCCce--------ee----eecCcccc-cEEEEee
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP---HIA--RAKKGKC--------YH----LVGTLLKD-SIYEQLK  147 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~---~~~--~~~~p~~--------~~----~~g~p~~~-~~~~~~~  147 (616)
                      ..|.|.++...|.|.|.|.|.|..|.........+   ..+  ....+..        +.    ..|.|.+. +.|++  
T Consensus       273 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k--  350 (524)
T 2ec8_A          273 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIY--  350 (524)
T ss_dssp             EEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEES--
T ss_pred             EEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEE--
Confidence            67899999999999999999998886644311100   000  0000011        11    22778888 99998  


Q ss_pred             ccCcccccccCCCceEecccCC----CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCC
Q psy12426        148 RSGLFDQFHLCPIWEKCAQTEG----DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQL  223 (616)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~  223 (616)
                      ++..+.   ....... .....    ....|.|.++..+|.|.|+|.|.|..|....+   ..+.+   ..+|.+.....
T Consensus       351 ~g~~~~---~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~---~~l~V---~~~P~i~~~~~  420 (524)
T 2ec8_A          351 MNRTFT---DKWEDYP-KSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIA---FNVYV---NTKPEILTYDR  420 (524)
T ss_dssp             SSCBCS---SSBCCEE-SCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEE---EEEEE---CEEEEEEEEEC
T ss_pred             CCeecc---CCcccee-EEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEE---EEEEE---ecCCeEeeccc
Confidence            543332   1111111 11111    23589999999999999999999998873321   12222   24565532211


Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecc--------cCc---EEEEecCCceE-EEecCCCCCCcEEEEEEE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS--------KDR---FKIVNDDKSTK-LKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~--------~~~---~~~~~~~~~~~-l~i~~l~~~~~g~y~c~a  291 (616)
                          +..|   .|.|.+.|.|.|.+.|++++..+..        +.+   ......+.... ..+......|.|.|+|.|
T Consensus       421 ----~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a  493 (524)
T 2ec8_A          421 ----LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKA  493 (524)
T ss_dssp             ----CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEE
T ss_pred             ----CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEE
Confidence                2345   8999999999999999999765421        111   11111121111 123444458999999999


Q ss_pred             EcCCCCceeeEEEEEecCCCCCC
Q psy12426        292 KNSWGTDKGTAKVTVLDIPSPPE  314 (616)
Q Consensus       292 ~n~~g~~~~~~~l~v~~~p~~p~  314 (616)
                      .|..|.....+.|.|.+.+....
T Consensus       494 ~N~~G~~~~~~~l~V~e~~~~~~  516 (524)
T 2ec8_A          494 YNDVGKTSAYFNFAFKGNNKEQI  516 (524)
T ss_dssp             ECSSCEEECCCCCCC--------
T ss_pred             EcCCCceEEEEEEEEecCCHHHc
Confidence            99999998888888887665443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.89  E-value=3.4e-22  Score=205.01  Aligned_cols=271  Identities=11%  Similarity=0.011  Sum_probs=159.6

Q ss_pred             ceEecCCCeEEEEEEEeeecCCeeeeeeCCeeee--------------------eccceEEEeecCCCC-----------
Q psy12426         11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLN--------------------LRPIWEKCAQTEGDT-----------   59 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~--------------------~~G~Y~C~a~n~~~~-----------   59 (616)
                      ......|+.+.|.|.+.|+|.|.|+|++++..+.                    .+|.|+|.|.|..|.           
T Consensus       148 p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~  227 (527)
T 3qs9_E          148 PYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLN  227 (527)
T ss_dssp             EEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESS
T ss_pred             CcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEe
Confidence            3445678889999999999999999999876541                    189999999998765           


Q ss_pred             --C----c------e--eEeeecc-CCccc----eeeccccCCC-----------------CCceEecCcccCCeEEEEE
Q psy12426         60 --P----K------G--KVLDLIE-GNHPI----WEKCAQTEGD-----------------TPKGKVLDLIEGNQYEFRV  103 (616)
Q Consensus        60 --~----~------~--~v~~~~~-~~~p~----w~~~~~~~~~-----------------~~~l~i~~l~~~~~~~y~c  103 (616)
                        |    .      +  ..+.|.. .|.|.    |.+.+.....                 ...|.|.++...|+|.|+|
T Consensus       228 ~~p~~~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C  307 (527)
T 3qs9_E          228 QTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC  307 (527)
T ss_dssp             SCCCCSCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEE
T ss_pred             ccCccCCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEE
Confidence              1    1      1  2223432 25544    9998775322                 1348999999999999999


Q ss_pred             EEEcCCCCCCCCCC-CCcceeecCC-----------Cceee--eecCcccccEEEEeeccCcccccccCCCceEecccCC
Q psy12426        104 LAVNKGGPGEPSDP-TAPHIARAKK-----------GKCYH--LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEG  169 (616)
Q Consensus       104 ~a~n~~g~~~~~~~-~~~~~~~~~~-----------p~~~~--~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (616)
                      .|.|. ........ .....+....           ...+.  ..|.|.+.+.|++  ++..+.   ....      ...
T Consensus       308 ~a~N~-~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k--~g~~l~---~~~~------~~~  375 (527)
T 3qs9_E          308 SSSKH-PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF--SRKSFP---CEQK------GLD  375 (527)
T ss_dssp             EETTE-EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEE--TTEEEE---CBCC------BCS
T ss_pred             EEEeC-CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEE--CCEECc---CCcc------ccc
Confidence            99987 11100000 0000000000           01111  2388889999998  532222   1111      112


Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeE
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE  249 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~  249 (616)
                      ....|.|.++..+|.|.|+|.|.|..|....+     +.+. ...+|.+....       .  ...|.|.+.|.|.|.+.
T Consensus       376 ~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~-----~~L~-V~~~P~i~~~~-------~--~~~l~C~a~g~P~p~i~  440 (527)
T 3qs9_E          376 NGYSISKFCNHKHQPGEYIFHAENDDAQFTKM-----FTLN-IRRKPQVLAEA-------S--ASQASCFSDGYPLPSWT  440 (527)
T ss_dssp             SSSEEEEECCCTTCCSCEEEEEEETTEEEEEE-----EEEC---CCCEEEECC-------C--CE---EEEECSSCCEEE
T ss_pred             CCcEEEEecCCcccCEEEEEEEEeCCCcEEEE-----EEEE-EecCCeEEEeC-------C--CCEEEEEEEEEcCCeEE
Confidence            44589999999999999999999998864421     2221 23567664221       1  23579999999999999


Q ss_pred             EEECCeeecccCc------E-----EEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy12426        250 WLCNDITIISKDR------F-----KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD  308 (616)
Q Consensus       250 W~~~~~~~~~~~~------~-----~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~  308 (616)
                      |++++........      .     ............|.-....|.|.|+|.|.|..|.....+.|.+..
T Consensus       441 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~  510 (527)
T 3qs9_E          441 WKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG  510 (527)
T ss_dssp             EECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC----
T ss_pred             EEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCC
Confidence            9987654311000      0     001111112233333334699999999999999998887775543

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.88  E-value=4.6e-22  Score=182.33  Aligned_cols=180  Identities=19%  Similarity=0.251  Sum_probs=143.3

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE-EEccccccceEEeccccCCCeEEEEEEEEe
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPMGDVSGTYTRAENLIEGHDYNFRVKAVN  387 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n  387 (616)
                      ++.+|.+ +.+......++.|+|.++    ...+.+|.|+++..+...+ ..........+.+.+|.+++.|.|+|.|.|
T Consensus         5 p~~~P~~-l~~~~~~~~si~l~W~~p----~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   79 (234)
T 3f7q_A            5 DLGAPQN-PNAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYG   79 (234)
T ss_dssp             CCCCCEE-EEEEECSSSCEEEEEECC----SSCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCCCcc-eEEEEcCCCEEEEEEECC----CCccceEEEEEEECCCCccceEEEcCCccEEEECCCCCCCEEEEEEEEEe
Confidence            4566666 777888889999999976    2378999999986543321 112224567899999999999999999999


Q ss_pred             cCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-C-----ceEeEee
Q psy12426        388 KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-P-----WEKACIV  461 (616)
Q Consensus       388 ~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~-----~~~~~~~  461 (616)
                      ..|.+..   +..+.+.+....|.+|.++.+...+.+++.|+|.+|...++ .|.+|.|+|+..++ .     |......
T Consensus        80 ~~G~g~~---s~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~  155 (234)
T 3f7q_A           80 AQGEGPY---SSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNG-EITAYEVCYGLVNDDNRPIGPMKKVLVD  155 (234)
T ss_dssp             TTEECCC---CCCEEEECCCCCCCCCCCCEEEECSSSCEEEECCCCSCCSS-CCCEEEEEEEEBCTTSCBSSCCEECCCS
T ss_pred             CCCcCCC---CCeEEEEcCCCCCCCCCccEEEEecCCEEEEEEcCCCCCCC-ceeEEEEEEEECCCCCCccCcceEEEec
Confidence            9998776   45667777778899999999999999999999998765444 79999999987654 2     3333334


Q ss_pred             cCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCC
Q psy12426        462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA  497 (616)
Q Consensus       462 ~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~  497 (616)
                      ......++|.+|.|++.|.|+|+|.|..|.|++|..
T Consensus       156 ~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  191 (234)
T 3f7q_A          156 NPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA  191 (234)
T ss_dssp             CTTCCEEEEECCCTTCCEEEEEEEEETTEECCCEEE
T ss_pred             CCcceEEEeCCCCCCCeEEEEEEEECCCccCCCcCc
Confidence            455679999999999999999999999999998763

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.88  E-value=5.7e-22  Score=188.81  Aligned_cols=253  Identities=13%  Similarity=0.092  Sum_probs=166.6

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|.. .+.++.+.+|+.++|.|.+.|    .|+|+|++..+..      .                            
T Consensus        12 ~P~i~~-~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~~------~----------------------------   52 (290)
T 2o26_X           12 PPSIHP-AQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEM------V----------------------------   52 (290)
T ss_dssp             CCEESS-CSSEEEEETTSCEEEEEECTT----EEEEEEECSSSCE------E----------------------------
T ss_pred             CCEEeC-CCCeEEEcCCCcEEEEECCCC----cEEEecCCcceee------e----------------------------
Confidence            577874 488999999999999999988    8999999987610      0                            


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeec----CCCcee--------ee---ecCcc-cccEEE
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA----KKGKCY--------HL---VGTLL-KDSIYE  144 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~----~~p~~~--------~~---~g~p~-~~~~~~  144 (616)
                       ......|.|.++...|.|.|+|.|.|  |.. ..  ..+.....    ..+..+        .+   +.+|. +.+.|+
T Consensus        53 -~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~~-~~--~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~  126 (290)
T 2o26_X           53 -ENKKNEWIQEKAEATRTGTYTCSNSN--GLT-SS--IYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLI  126 (290)
T ss_dssp             -EECSSEEEETTCCGGGCEEEEEEESS--SCE-EE--EEEEEECSSCCBCCCCCEEEETTSCEEECCCBSCCSCEEEEEE
T ss_pred             -cCCCceEEEeccCHHhCeEEEEEeeC--Ccc-EE--EEEEEeCCCcccccccceEEecCCeEEEeCcCCCCCCceEEEE
Confidence             00126899999999999999999998  431 11  00000000    111111        11   12366 789997


Q ss_pred             EeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeE-EEEEEEEeCCCCCCCCCCCCCEEecc-ccCCCceeccC
Q psy12426        145 QLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQY-EFRVLAVNKGGPGEPSDPTAPHIARA-KKVSPYINRDQ  222 (616)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~-~y~c~a~n~~g~~~~s~~~~~~~~~~-~~~~P~~~~~~  222 (616)
                      +  .+|..   ........  .  .....|.|.++..+|.| .|+|.|.|..|.....  ...+.+.. ...+|.+.. .
T Consensus       127 ~--~~g~~---l~~~~~~~--~--~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~--~~~l~V~~~~~~~P~i~~-~  194 (290)
T 2o26_X          127 E--CDGKS---LPTDLTFV--P--NPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSD--KFTLKVREAIKAIPVVSV-P  194 (290)
T ss_dssp             E--TTSCC---CCTTCEEE--E--ETTTEEEEESCCGGGTTCEEEEEEEETTEEEECC--CEEEEEECCCCSCCEEEC-S
T ss_pred             e--CCCcC---CCCCCcee--e--CCCCCEEEecccHHHCCCEEEEEEEECCceEEeE--EEEEEEEeCCCCCCcccc-C
Confidence            6  43311   11111111  1  12247999999999999 9999999985442211  12233321 235677643 3


Q ss_pred             CcceEEEcCCeEEEEEEEeeecCce-eEEEECCeee----cccCcEEEEe---cCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITI----ISKDRFKIVN---DDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~-~~W~~~~~~~----~~~~~~~~~~---~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +....+..|+.+.|.|.+.+.|.+. +.|++++..+    .......+..   ......|.|.++...|.|.|+|.|.|.
T Consensus       195 ~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~  274 (290)
T 2o26_X          195 ETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNT  274 (290)
T ss_dssp             CSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECS
T ss_pred             CCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCC
Confidence            4455888999999999999999996 9999998763    2222222221   122358999999999999999999999


Q ss_pred             CCCceeeEEEEEecCC
Q psy12426        295 WGTDKGTAKVTVLDIP  310 (616)
Q Consensus       295 ~g~~~~~~~l~v~~~p  310 (616)
                      .|.....+.|.|..+|
T Consensus       275 ~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          275 FGSANVTTTLKVVEKG  290 (290)
T ss_dssp             SCEEEEEEEECC----
T ss_pred             CCcEEEEEEEEEEeCC
Confidence            9999888888877654

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.88  E-value=2.3e-24  Score=235.09  Aligned_cols=294  Identities=15%  Similarity=0.191  Sum_probs=0.0

Q ss_pred             CceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-------------------ccceEEEeecCCCC-----------
Q psy12426         10 GDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-------------------RPIWEKCAQTEGDT-----------   59 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-------------------~G~Y~C~a~n~~~~-----------   59 (616)
                      ....+.+|+.+.|.|.+.|+|.|.|+|+|+|..+..                   +|.|+|.|.|..|.           
T Consensus       338 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v  417 (772)
T 3v2a_R          338 SLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVV  417 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEE
Confidence            467799999999999999999999999999976532                   89999999998553           


Q ss_pred             ---Cce-----------------eEeeeccCCccc-----eeecccc---------------------------------
Q psy12426         60 ---PKG-----------------KVLDLIEGNHPI-----WEKCAQT---------------------------------   81 (616)
Q Consensus        60 ---~~~-----------------~v~~~~~~~~p~-----w~~~~~~---------------------------------   81 (616)
                         |.-                 ..+.|...|.|.     |.+.+..                                 
T Consensus       418 ~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  497 (772)
T 3v2a_R          418 YVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKI  497 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcE
Confidence               100                 011222223332     8774211                                 


Q ss_pred             -------------CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcce--eecCCC-------ceee----eec
Q psy12426         82 -------------EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI--ARAKKG-------KCYH----LVG  135 (616)
Q Consensus        82 -------------~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~--~~~~~p-------~~~~----~~g  135 (616)
                                   ......|.|.++  .|.|.|+|.|.|..|.........+..  .....|       ..+.    ..|
T Consensus       498 ~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~~  575 (772)
T 3v2a_R          498 EVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADR  575 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeeccCCcccccCCceEEEEeccC
Confidence                         001135556655  689999999999999776552221110  000011       0111    227


Q ss_pred             CcccccEEEEeeccCcccccccCCC------------ceEec----ccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCC
Q psy12426        136 TLLKDSIYEQLKRSGLFDQFHLCPI------------WEKCA----QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  199 (616)
Q Consensus       136 ~p~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~----~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  199 (616)
                      .|.+.+.|++  ++..... .....            |....    ........|.|.++..+|.|.|+|.|.|..|...
T Consensus       576 ~p~~~v~W~k--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~  652 (772)
T 3v2a_R          576 STFENLTWYK--LGPQPLP-IHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKR  652 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCcEEEE--cCCcccc-cccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeE
Confidence            7888899998  4322110 00000            00000    1111234599999999999999999999665433


Q ss_pred             CCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCC
Q psy12426        200 PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS  279 (616)
Q Consensus       200 ~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l  279 (616)
                      .+. ...+.+. ...+|.+. ..+.+..+..|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+..  ....|.|.++
T Consensus       653 ~s~-~~~l~v~-~~~~P~~~-~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~--~~~~L~I~~v  727 (772)
T 3v2a_R          653 HCV-VRQLTVL-ERVAPTIT-GNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRV  727 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEE-EEeeccc-ccCCCEee-cCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcC--CCcEEEECcC
Confidence            211 1112222 23567664 33456788999999999999999999999999999887666555443  2358999999


Q ss_pred             CCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCC
Q psy12426        280 KRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP  313 (616)
Q Consensus       280 ~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p  313 (616)
                      ...|.|.|+|.|.|..|....++.|.|..+|...
T Consensus       728 ~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~  761 (772)
T 3v2a_R          728 RKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT  761 (772)
T ss_dssp             ----------------------------------
T ss_pred             CHHHCEEEEEEEEeCCcceeEEEEEEEECCCCcc
Confidence            9999999999999999999999999998877644

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.88  E-value=4.6e-21  Score=171.96  Aligned_cols=185  Identities=22%  Similarity=0.351  Sum_probs=144.2

Q ss_pred             EecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC-CCCEEEccc---cccceEEeccccCCCeEEE
Q psy12426        306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME-TGRWVPMGD---VSGTYTRAENLIEGHDYNF  381 (616)
Q Consensus       306 v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~-~~~~~~~~~---~~~~~~~i~~L~~~~~y~~  381 (616)
                      +..+|.+|.+ +.+.. ...++.|+|.++. +++..+.+|.|+++... ...|.....   .....+.+ +|.+++.|.|
T Consensus         2 v~~~P~~P~~-~~~~~-~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~   77 (205)
T 1cfb_A            2 VQDVPNAPKL-TGITC-QADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTF   77 (205)
T ss_dssp             CCCCCCCCEE-EEEEE-CSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEE
T ss_pred             cccCCCCCCC-cEEEe-cCCEEEEEEECcc-cCCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEE
Confidence            4567888877 77777 8899999999874 45678999999998654 355643321   33455666 9999999999


Q ss_pred             EEEEEecCcCCCCccccCCEEccCCCCCC-CCCCCCEEEEecCCeEEEEecCCCC-CCCCcceeEEEEEeeCCC--CceE
Q psy12426        382 RVKAVNKIGESLPLVCQSPITAKDPFGRP-DRPGQPTVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYG--PWEK  457 (616)
Q Consensus       382 ~v~a~n~~g~~~~~~~s~~~~~~~~~~~p-~~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~i~~~~~~~--~~~~  457 (616)
                      +|.|.|..|.+.++..+..+.  +....| .+|.++.+...+.+++.|+|++|.. +.++.+.+|.|+|+..+.  .|..
T Consensus        78 ~V~A~n~~G~~~~s~~~~~~~--T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~  155 (205)
T 1cfb_A           78 RVIAFNKIGASPPSAHSDSCT--TQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWEN  155 (205)
T ss_dssp             EEEEEETTEECCCCCCCCCEE--ECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEE
T ss_pred             EEEEEECCccCCCCCCceeEE--cCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCCCcEE
Confidence            999999999988763233333  334444 5788999998899999999998762 344569999999998776  4777


Q ss_pred             eEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCC
Q psy12426        458 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSK  496 (616)
Q Consensus       458 ~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~  496 (616)
                      ..........++|.+|.|++.|.|+|+|.|..|.|+++.
T Consensus       156 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss  194 (205)
T 1cfb_A          156 NNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAA  194 (205)
T ss_dssp             EEECCTTCCEEEECSCCSSCEEEEEEEEEETTEECSSCC
T ss_pred             EEecCCCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCCC
Confidence            665555678999999999999999999999999999643

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.88  E-value=7.1e-22  Score=191.58  Aligned_cols=251  Identities=8%  Similarity=-0.036  Sum_probs=169.1

Q ss_pred             CCceEecCCCeEEEEEEEeee---------cCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          9 LGDIKLSAGTTLKFDANIIGE---------PVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~---------P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ..++.|.+|+.|.|.|.+.|.         |.|.|+|+|++..+......                              
T Consensus        36 ~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~------------------------------   85 (329)
T 3oq3_B           36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR------------------------------   85 (329)
T ss_dssp             EEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT------------------------------
T ss_pred             cceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce------------------------------
Confidence            356779999999999998884         66899999999887632221                              


Q ss_pred             ccCCCCCceEecCcccCCeE-EEEEEEEcCCCCCCCCCCCCcceeecCCCc--------------eee----eecCc-cc
Q psy12426         80 QTEGDTPKGKVLDLIEGNQY-EFRVLAVNKGGPGEPSDPTAPHIARAKKGK--------------CYH----LVGTL-LK  139 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~-~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~--------------~~~----~~g~p-~~  139 (616)
                         .....|.|.++...|+| .|+|.|.|..|.....  ... .+...+|.              .+.    ..|.| .+
T Consensus        86 ---~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~--~~~-~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~  159 (329)
T 3oq3_B           86 ---VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG--IVR-SHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYN  159 (329)
T ss_dssp             ---EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEE--EEE-EEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCC
T ss_pred             ---eecceEEEcCCChHhCCCcEEEEEEeCCCceeeE--EEE-EEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCc
Confidence               11468999999999999 9999999988753222  100 11111221              111    22778 88


Q ss_pred             ccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeC--CCCCCCCC-CCCCEEeccccCCC
Q psy12426        140 DSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK--GGPGEPSD-PTAPHIARAKKVSP  216 (616)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~--~g~~~~s~-~~~~~~~~~~~~~P  216 (616)
                      .+.|++  ++..+.  .........      ...|.|.++..+|.|.|+|.|.|.  .|...... ....+.+...+..+
T Consensus       160 ~i~W~k--~~~~l~--~~~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~  229 (329)
T 3oq3_B          160 NITWYK--NNQELI--IDGTKYSQS------GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR  229 (329)
T ss_dssp             EEEEEE--TTEECC--CSSSSEEEE------TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCC
T ss_pred             eEEEEE--CCccCC--CCCceEecC------CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCC
Confidence            999999  533321  111111111      358999999999999999999997  65433210 00112222111111


Q ss_pred             ceeccCCcceEEEcCCeEEEEEEEeeec---Cc-eeEEEECCeee-cccCcEEEE--ecC--CceEEEecCCCCCCcE-E
Q psy12426        217 YINRDQLSDIKVRAGSNFEFDINVIGEP---IP-TKEWLCNDITI-ISKDRFKIV--NDD--KSTKLKVFDSKRGDSG-I  286 (616)
Q Consensus       217 ~~~~~~~~~~~v~~g~~~~l~c~~~~~p---~~-~~~W~~~~~~~-~~~~~~~~~--~~~--~~~~l~i~~l~~~~~g-~  286 (616)
                      .... .+....+..|+.+.|.|.+.+.|   .+ .+.|++++..+ ..+.+....  ..+  ....|.|.++...|.| .
T Consensus       230 ~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~  308 (329)
T 3oq3_B          230 FKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNT  308 (329)
T ss_dssp             EEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCE
T ss_pred             Ccee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCc
Confidence            1112 45568899999999999999998   67 88999998874 333322221  111  3458999999999999 9


Q ss_pred             EEEEEEcCCCCceeeEEEEE
Q psy12426        287 YTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       287 y~c~a~n~~g~~~~~~~l~v  306 (616)
                      |+|.|.|..|.....+.+.+
T Consensus       309 Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          309 YTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEEecCCceEEEEEEEe
Confidence            99999999998887777665

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.88  E-value=8.3e-22  Score=196.85  Aligned_cols=252  Identities=15%  Similarity=0.113  Sum_probs=172.0

Q ss_pred             CCceEecCCCeEEEEEEE-eeecCCeeeeeeCCe---eeee----ccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          9 LGDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGN---PLNL----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~---~l~~----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      +.+..+.+|+.+.|.|.+ .|.|.|.|+|+|++.   +...    ..+|.                              
T Consensus       107 ~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~------------------------------  156 (395)
T 1bih_A          107 THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRIT------------------------------  156 (395)
T ss_dssp             EEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEE------------------------------
T ss_pred             CcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEE------------------------------
Confidence            456778899999999995 899999999999872   1110    11111                              


Q ss_pred             cCCCCCceEecCcccCCeE---EEEEEEEcCCCCCCCCCCC------C----------cce-------eecCCCceee--
Q psy12426         81 TEGDTPKGKVLDLIEGNQY---EFRVLAVNKGGPGEPSDPT------A----------PHI-------ARAKKGKCYH--  132 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~---~y~c~a~n~~g~~~~~~~~------~----------~~~-------~~~~~p~~~~--  132 (616)
                       ......|.|.++...|.|   .|+|.|.|..|........      .          ...       +.......+.  
T Consensus       157 -~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~  235 (395)
T 1bih_A          157 -AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCM  235 (395)
T ss_dssp             -ECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEE
T ss_pred             -EcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEE
Confidence             112457999999999999   9999999988875422000      0          000       0000111111  


Q ss_pred             eecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccc
Q psy12426        133 LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK  212 (616)
Q Consensus       133 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~  212 (616)
                      ..|.|.+.+.|++  ++..+.   .................|.|.++..+|.|.|+|.|.|..|......  ..+.+   
T Consensus       236 ~~g~p~~~i~W~~--~g~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~--~~l~V---  305 (395)
T 1bih_A          236 YGSNPMGYPNYFK--NGKDVN---GNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS--LKLTV---  305 (395)
T ss_dssp             EECSSCCCCEEEE--TTEECC---CCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEE--EEEEE---
T ss_pred             eccCCCCeEEEEE--CCEEcC---CCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEE--EEEEE---
Confidence            2278888999999  533222   1111111111122334799999999999999999999887643211  11222   


Q ss_pred             cCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       213 ~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      ..+|.+.........+..|+.+.|.|.+.|.|.+.+.|++++..+..+ ++.+...    .|.|.++...|.|.|+|.|.
T Consensus       306 ~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~----~L~i~~~~~~d~G~Y~C~a~  380 (395)
T 1bih_A          306 VSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTDS----GLVIKGVKNGDKGYYGCRAT  380 (395)
T ss_dssp             EEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEETT----EEEESSCCSTTCEEEEEEEE
T ss_pred             EcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEECC----EEEEeeCCcccCEEEEEEEE
Confidence            245666443333378899999999999999999999999999987644 5554422    99999999999999999999


Q ss_pred             cCCCCceeeEEEEE
Q psy12426        293 NSWGTDKGTAKVTV  306 (616)
Q Consensus       293 n~~g~~~~~~~l~v  306 (616)
                      |..|.....+.|.|
T Consensus       381 N~~G~~~~~~~l~V  394 (395)
T 1bih_A          381 NEHGDKYFETLVQV  394 (395)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ccCCCceEEEEEEE
Confidence            99999888877765

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.87  E-value=2.4e-21  Score=200.90  Aligned_cols=284  Identities=15%  Similarity=0.095  Sum_probs=170.2

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeCCeeee-----------------------e-------ccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAGGNPLN-----------------------L-------RPI   48 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~~~~l~-----------------------~-------~G~   48 (616)
                      ||.+... +....+.+|+.+.|.|.+.|.|+|  .|+|+|||+.+.                       +       +|.
T Consensus       114 ~P~~~~~-~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  192 (523)
T 2rcj_C          114 NPTVTLF-PPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRS  192 (523)
T ss_pred             CCeEEec-CCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCce
Confidence            3555433 445567789999999999998765  899999986541                       1       899


Q ss_pred             eEEEeecCCCCC----------------------------ce--eEeeeccCCc---cc---eeeccccCC---------
Q psy12426         49 WEKCAQTEGDTP----------------------------KG--KVLDLIEGNH---PI---WEKCAQTEG---------   83 (616)
Q Consensus        49 Y~C~a~n~~~~~----------------------------~~--~v~~~~~~~~---p~---w~~~~~~~~---------   83 (616)
                      |+|.|.|..+..                            .+  ..+.|...|.   |.   |.+++....         
T Consensus       193 Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~  272 (523)
T 2rcj_C          193 YSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQ  272 (523)
T ss_pred             EEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEec
Confidence            999999975430                            00  1222322233   32   999876521         


Q ss_pred             CC------CceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCc---ceeecCCCc-----------eee--eecCcc---
Q psy12426         84 DT------PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP---HIARAKKGK-----------CYH--LVGTLL---  138 (616)
Q Consensus        84 ~~------~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~---~~~~~~~p~-----------~~~--~~g~p~---  138 (616)
                      ..      ..|.|.++...| |.|.|.|.|..|..........   ..+....|.           .+.  ..|.+.   
T Consensus       273 ~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~  351 (523)
T 2rcj_C          273 SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDP  351 (523)
T ss_pred             CCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCCC
Confidence            11      278999999999 9999999999997543311111   111112221           111  125432   


Q ss_pred             -cccEEEEeeccCcccccccCCCceEecccCC---CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEe-cccc
Q psy12426        139 -KDSIYEQLKRSGLFDQFHLCPIWEKCAQTEG---DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA-RAKK  213 (616)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~-~~~~  213 (616)
                       +.++|++  ++..+.   ............+   ....|.|.++..+|.|.|+|.|.|..+.....   ..+.. ....
T Consensus       352 ~~~v~W~k--~g~~l~---~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~---~~~~~~~~~~  423 (523)
T 2rcj_C          352 QVKFNWYV--DGVQVH---NAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIE---KTISKAKGQP  423 (523)
T ss_pred             ceEEEEEE--CCeEcc---CCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCcee---EEEEcccCCC
Confidence             4899998  533322   1111000000001   11248889999999999999999886653321   11221 1134


Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCc--eeEEEECCeeecccCcEEE--EecCC---ceEEEecCCCCCCcEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKI--VNDDK---STKLKVFDSKRGDSGI  286 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~--~~~W~~~~~~~~~~~~~~~--~~~~~---~~~l~i~~l~~~~~g~  286 (616)
                      .+|.+....+....+..| .+.|.|.+.+.+.+  .+.|+++|..+........  ..++.   ...|.+......|.|.
T Consensus       424 ~~P~v~~~~~~~~~~~~~-~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~  502 (523)
T 2rcj_C          424 REPQVYTLPPSREEMTKN-QVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV  502 (523)
T ss_pred             CCCEEEEeCCChHHccCC-ceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCe
Confidence            566654333333334444 49999999998666  8999999988764332222  11221   1235555555577999


Q ss_pred             EEEEEEcCC
Q psy12426        287 YTLAVKNSW  295 (616)
Q Consensus       287 y~c~a~n~~  295 (616)
                      |+|.|.|..
T Consensus       503 Y~C~a~n~~  511 (523)
T 2rcj_C          503 FSCSVMHEA  511 (523)
T ss_pred             EEEEEEcCC
Confidence            999999864

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.87  E-value=1e-21  Score=195.70  Aligned_cols=251  Identities=11%  Similarity=0.062  Sum_probs=170.3

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecC---CeeeeeeCCeeeee-----ccceEEEeecCCCCCceeEeeeccCCcc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPV---PHVDWRAGGNPLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHP   73 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~---p~v~W~~~~~~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p   73 (616)
                      |.+. ..+.+..+.+|+.+.|.|.+.+.|.   +.|+|+|++..+..     .++|.-                      
T Consensus       104 p~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----------------------  160 (388)
T 2v5m_A          104 QYYE-ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV----------------------  160 (388)
T ss_dssp             CCCC-CBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEE----------------------
T ss_pred             cccc-cCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEE----------------------
Confidence            4444 3367789999999999999988754   78999999987753     222211                      


Q ss_pred             ceeeccccCCCCCceEecCcccCCe-EEEEEEEEcCCCCCCC-CCCCCcceee-------------cCCCce------ee
Q psy12426         74 IWEKCAQTEGDTPKGKVLDLIEGNQ-YEFRVLAVNKGGPGEP-SDPTAPHIAR-------------AKKGKC------YH  132 (616)
Q Consensus        74 ~w~~~~~~~~~~~~l~i~~l~~~~~-~~y~c~a~n~~g~~~~-~~~~~~~~~~-------------~~~p~~------~~  132 (616)
                               .....|.|.++...|. |.|+|.|.|..+.... +.......+.             ...|..      +.
T Consensus       161 ---------~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~  231 (388)
T 2v5m_A          161 ---------LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTIS  231 (388)
T ss_dssp             ---------CTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEE
T ss_pred             ---------ccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEE
Confidence                     1246899999999999 9999999997643221 1000000010             011111      11


Q ss_pred             ----eecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEE
Q psy12426        133 ----LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI  208 (616)
Q Consensus       133 ----~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~  208 (616)
                          ..|.|.+.+.|++  ++....   .................|.|.++..+|.|.|+|.|.|..|.....   ..+.
T Consensus       232 l~C~~~g~p~p~v~W~~--~~~~~~---~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~---~~l~  303 (388)
T 2v5m_A          232 LLCPAQGFPAPSFRWYK--FIEGTT---RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE---TVLT  303 (388)
T ss_dssp             ECCCCEEESCCEEEEEE--ECTTSS---CEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEE---EEEE
T ss_pred             EEEECCCCCCCEEEEEe--cCCCCc---ccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEE---EEEE
Confidence                1277888999998  411110   000000000011123489999999999999999999998863221   1122


Q ss_pred             eccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        209 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       209 ~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      +.   .+|.+. ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+..+          ...|.|.++...|.|.|+
T Consensus       304 V~---~~p~~~-~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~----------~~~L~i~~v~~~d~G~Y~  369 (388)
T 2v5m_A          304 VT---APLSAK-IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDKGMYQ  369 (388)
T ss_dssp             EE---EEEEEE-EESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC----------SSEEEESSCCGGGCEEEE
T ss_pred             Ee---CCCccc-cCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC----------CCEEEEecCChhhCEEEE
Confidence            21   334442 2345678899999999999999999999999999887532          248999999999999999


Q ss_pred             EEEEcCCCCceeeEEEEE
Q psy12426        289 LAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       289 c~a~n~~g~~~~~~~l~v  306 (616)
                      |.|.|..|....++.|.|
T Consensus       370 C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          370 CFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEEECSSCEEEEEEEEEE
T ss_pred             EEEEcCCCcEEEEEEEEe
Confidence            999999999888887765

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.87  E-value=2.1e-21  Score=194.54  Aligned_cols=255  Identities=18%  Similarity=0.215  Sum_probs=176.0

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEE-eeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      |.+....+.+..+.+|+.+.|.|.+ .|.|.|.|+|+|++..... ...+.                             
T Consensus       116 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~-----------------------------  166 (404)
T 3p3y_A          116 PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVS-----------------------------  166 (404)
T ss_dssp             CCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEE-----------------------------
T ss_pred             CccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEE-----------------------------
Confidence            4444444667899999999999998 8999999999999854432 22211                             


Q ss_pred             ccCCCCCceEecCcccCC-eEEEEEEEEcCCCCCCCCC-CCCccee-----ecCCC-----------------ceee---
Q psy12426         80 QTEGDTPKGKVLDLIEGN-QYEFRVLAVNKGGPGEPSD-PTAPHIA-----RAKKG-----------------KCYH---  132 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~-~~~y~c~a~n~~g~~~~~~-~~~~~~~-----~~~~p-----------------~~~~---  132 (616)
                        ......|.|.++...| .|.|+|.|.|..|...... .......     ....|                 ..+.   
T Consensus       167 --~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C  244 (404)
T 3p3y_A          167 --QGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLEC  244 (404)
T ss_dssp             --ECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEEC
T ss_pred             --EcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEE
Confidence              1124579999999999 4999999999877542211 0111000     00011                 0111   


Q ss_pred             -eecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc
Q psy12426        133 -LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA  211 (616)
Q Consensus       133 -~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~  211 (616)
                       ..|.|.+.+.|++  ++..+.    .... .   .......|.|.++..+|.|.|+|.|.|..|.....   ..+.+  
T Consensus       245 ~~~g~p~~~v~W~~--~~~~~~----~~~~-~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~---~~l~V--  309 (404)
T 3p3y_A          245 IASGVPTPDIAWYK--KGGDLP----SDKA-K---FENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT---ISVRV--  309 (404)
T ss_dssp             CBCCSSCCEEEEEE--TTBCCC----TTTE-E---EEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEE---EEEEE--
T ss_pred             EECCCCCCcEEEEE--CCEECC----CCcc-c---ccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEE---EEEEE--
Confidence             2277888999999  533222    1111 1   11223589999999999999999999988863321   11222  


Q ss_pred             ccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC---cEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        212 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD---RFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       212 ~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                       ..+|.+ ...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....   .... ..   ..|.|.++...|.|.|+
T Consensus       310 -~~~p~~-~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~-~~---~~L~i~~v~~~d~G~Y~  383 (404)
T 3p3y_A          310 -KAAPYW-LDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV-AG---DTIIFRDTQISSRAVYQ  383 (404)
T ss_dssp             -EEEEEE-EECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEE-ET---TEEEESSCCSSCCCEEE
T ss_pred             -eCCCee-eccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEe-cC---CEEEEeecCHHHCEEEE
Confidence             234555 344566889999999999999999999999999999886543   2222 22   28999999999999999


Q ss_pred             EEEEcCCCCceeeEEEEEec
Q psy12426        289 LAVKNSWGTDKGTAKVTVLD  308 (616)
Q Consensus       289 c~a~n~~g~~~~~~~l~v~~  308 (616)
                      |.|.|..|.....+.+.|.+
T Consensus       384 C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          384 CNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EEEEETTEEEEEEEEEEEC-
T ss_pred             EEEEeCCCcEEEEEEEEEEe
Confidence            99999999998888887754

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.87  E-value=1.6e-21  Score=187.97  Aligned_cols=251  Identities=8%  Similarity=-0.005  Sum_probs=153.2

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|... |. ..|.+|+.|+|.|.+.|. .+.+.|+|+|..+... .                               .
T Consensus        24 ~P~i~~~-p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~-~-------------------------------~   68 (316)
T 3vh8_G           24 KPFLSAW-PS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI-F-------------------------------H   68 (316)
T ss_dssp             CCEEEEE-SC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH-H-------------------------------H
T ss_pred             CCEeecc-CC-CccCCCCCEEEEEEccCC-CceEEEEeCCCcccee-e-------------------------------c
Confidence            4666644 45 568899999999999988 6799999999865410 0                               0


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCC---CCCCCCCCcceeec-CCCc-------------eee---eecCcccc
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP---GEPSDPTAPHIARA-KKGK-------------CYH---LVGTLLKD  140 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~---~~~~~~~~~~~~~~-~~p~-------------~~~---~~g~p~~~  140 (616)
                      .......|.|.++...|.|.|+|.|.|..+.   +..+.......... ..|.             .+.   .+..+...
T Consensus        69 ~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~  148 (316)
T 3vh8_G           69 GRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFEH  148 (316)
T ss_dssp             HCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSCCSE
T ss_pred             CCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCCCcE
Confidence            0122568999999999999999999875432   22221111111000 0110             111   11455667


Q ss_pred             cEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCC--CCEEeccccCCCce
Q psy12426        141 SIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT--APHIARAKKVSPYI  218 (616)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~--~~~~~~~~~~~P~~  218 (616)
                      +.|++  ++..+.    ................|.|.+++.+|.|.|+|.|.|..|....+...  ..+.+.....+|.+
T Consensus       149 ~~w~k--~g~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i  222 (316)
T 3vh8_G          149 FFLHK--EGISKD----PSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSL  222 (316)
T ss_dssp             EEEEE--TTCCSC----CEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEE
T ss_pred             EEEEE--CCCccc----cceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeE
Confidence            88988  532221    00000001111234579999999999999999999998753222222  23444444456666


Q ss_pred             eccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        219 NRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       219 ~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      .... . ..+.+|+.+.|.|.+. .+.+.+.|++++..+........... .....|.|.++.  |.|.|+|.|.|..+.
T Consensus       223 ~~~~-~-~~v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~  297 (316)
T 3vh8_G          223 SAQP-G-PKVQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP  297 (316)
T ss_dssp             EEES-C-SCCCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred             EeCC-C-CeecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence            4332 2 2568899999999997 47789999999876543221111111 223589999999  999999999997653

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.87  E-value=1e-20  Score=191.65  Aligned_cols=340  Identities=10%  Similarity=0.024  Sum_probs=197.3

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCC----eeeeeeCC--eeeee------------ccceEEEeecCCCCCceeEeeec
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVP----HVDWRAGG--NPLNL------------RPIWEKCAQTEGDTPKGKVLDLI   68 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p----~v~W~~~~--~~l~~------------~G~Y~C~a~n~~~~~~~~v~~~~   68 (616)
                      +.|.++.+.+|++|.|.|.+.|.|.|    .|.|+|++  ..+..            .++|.-..               
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~---------------   70 (438)
T 1qgc_4            6 QSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG---------------   70 (438)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE---------------
T ss_pred             ecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc---------------
Confidence            44889999999999999999999874    89999974  32220            11211110               


Q ss_pred             cCCccceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCC-CCC------cceeecCCC-------ceee--
Q psy12426         69 EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD-PTA------PHIARAKKG-------KCYH--  132 (616)
Q Consensus        69 ~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~-~~~------~~~~~~~~p-------~~~~--  132 (616)
                                   ......|.|.+++..|+|.|+|.|.|..|...... ...      ...+....+       ..+.  
T Consensus        71 -------------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~  137 (438)
T 1qgc_4           71 -------------SRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVV  137 (438)
T ss_dssp             -------------ETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEE
T ss_pred             -------------cCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEE
Confidence                         11245799999999999999999999876432110 000      001111111       0111  


Q ss_pred             --eec-Cccc-ccEEEEeeccCcccccccCCCceEec-ccCCC-----CCeEEeecccCCCeEEEEEEEEeCCCCCCCCC
Q psy12426        133 --LVG-TLLK-DSIYEQLKRSGLFDQFHLCPIWEKCA-QTEGD-----TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD  202 (616)
Q Consensus       133 --~~g-~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~  202 (616)
                        ..| .|.+ .+.|++  ++..+.    ........ ....+     ...|.|.++..+|.|.|+|.|.|..|...   
T Consensus       138 C~~~g~~p~~~~v~W~k--~g~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~---  208 (438)
T 1qgc_4          138 CFLNNFYPKDINVKWKI--DGSERQ----NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP---  208 (438)
T ss_dssp             EEEEEEBSSCEEEEEEE--TTEEEC----TTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC---
T ss_pred             EEEccccCCCcEEEEEE--CCEEcC----CCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCc---
Confidence              114 5666 799998  532221    11011000 11111     23689999999999999999999876532   


Q ss_pred             CCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeec--CceeEEEEC--Ceeec-----------------ccC
Q psy12426        203 PTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP--IPTKEWLCN--DITII-----------------SKD  261 (616)
Q Consensus       203 ~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p--~~~~~W~~~--~~~~~-----------------~~~  261 (616)
                        ..+.+.....++.  ...+....+.+|+.+.|.|.+.+.|  .+.+.|+++  +..+.                 ...
T Consensus       209 --~~~~~~~~~~~~~--~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~  284 (438)
T 1qgc_4          209 --IVKSFNRNECEVM--LVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKG  284 (438)
T ss_dssp             --EEEEEETTC-CCE--EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTT
T ss_pred             --eecccccccceeE--EecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCC
Confidence              1122222111222  2234567899999999999999988  679999986  43321                 134


Q ss_pred             cEEEEec--CCceEEEecCCCCCCcEEEEEEEEcCCC-----CceeeEEEEEecCC-CCCCC---CccceeecCCeEEEE
Q psy12426        262 RFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSWG-----TDKGTAKVTVLDIP-SPPEG---PLKPSNITKSSCNLE  330 (616)
Q Consensus       262 ~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n~~g-----~~~~~~~l~v~~~p-~~p~~---~~~~~~~~~~~~~l~  330 (616)
                      ++.+...  .....|.|.+++..|.|.|+|.|.|..+     .......+.+...+ .+|.-   +-......+..+.|.
T Consensus       285 r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~  364 (438)
T 1qgc_4          285 RFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLG  364 (438)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEE
T ss_pred             cEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEE
Confidence            5555443  3456899999999999999999998444     22234566665422 22210   001112346788999


Q ss_pred             EeCCCCCCCCceEEEEEEEEeCCCCCE-E-----Eccc--cccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        331 WRAPRDDGGTDILHYVVEKMDMETGRW-V-----PMGD--VSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       331 W~~~~~~~~~~i~~y~v~~~~~~~~~~-~-----~~~~--~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      |...... ..++   .+.|...+...- .     ....  .....+.|......+ +.|+|.|.|..|..
T Consensus       365 C~~~g~~-P~~~---~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~  429 (438)
T 1qgc_4          365 CLVKGYF-PEPV---TVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  429 (438)
T ss_dssp             EEEESCB-SSCC---EEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTE
T ss_pred             EEecccc-CCCc---EEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCc
Confidence            9863221 1111   233332221110 0     0000  011246666665445 78889999988863

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.87  E-value=5.5e-22  Score=216.26  Aligned_cols=237  Identities=17%  Similarity=0.203  Sum_probs=177.9

Q ss_pred             ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeC--------------CCCCEEEcccc-----------ccceEEec
Q psy12426        317 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM--------------ETGRWVPMGDV-----------SGTYTRAE  371 (616)
Q Consensus       317 ~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~--------------~~~~~~~~~~~-----------~~~~~~i~  371 (616)
                      +.+..++.+++.|+|.+|...++..+.+|.|+++..              +...|......           ....+.+.
T Consensus       475 l~v~~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~  554 (897)
T 2dtg_E          475 FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMR  554 (897)
T ss_dssp             CSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEEC
T ss_pred             EEEEEEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccccccceEeC
Confidence            677888999999999988766667899999998764              12356543321           14679999


Q ss_pred             cccCCCeEEEEEEE-EecCcCCC-CccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEe
Q psy12426        372 NLIEGHDYNFRVKA-VNKIGESL-PLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKK  449 (616)
Q Consensus       372 ~L~~~~~y~~~v~a-~n~~g~~~-~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~  449 (616)
                      +|.|++.|.|+|.| .|..|.+. ++..+..+.+.+...+|++|.++.+...+.+++.|+|.+|..+++ .|.+|+|+|+
T Consensus       555 ~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG-~I~~Y~V~~~  633 (897)
T 2dtg_E          555 GLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWE  633 (897)
T ss_dssp             SCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEEEEEEECSSSCEEEEEECCCCSSS-SCSEEECCEE
T ss_pred             CCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcceEEEeCCCCEEEEEEeCCCCCCC-CeeEEEEEEE
Confidence            99999999999999 89888732 123366677788888999999999999999999999998865555 5999999987


Q ss_pred             eCCC------------------------------------------------------------------CceEe-----
Q psy12426        450 PKYG------------------------------------------------------------------PWEKA-----  458 (616)
Q Consensus       450 ~~~~------------------------------------------------------------------~~~~~-----  458 (616)
                      ..+.                                                                  .|...     
T Consensus       634 ~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W~~~~~n~v  713 (897)
T 2dtg_E          634 RQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVV  713 (897)
T ss_dssp             EECCCCSCTTCSSSCSCCCCCC----------------------------------------------------------
T ss_pred             ECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhhhhhhhheeeeEEEccCceE
Confidence            5322                                                                  01100     


Q ss_pred             -E-------------------------eecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCee
Q psy12426        459 -C-------------------------IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVI  512 (616)
Q Consensus       459 -~-------------------------~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~  512 (616)
                       .                         ........++|.+|.|++.|.|+|+|.|..|.|++......+...+.+.    
T Consensus       714 ~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~T~~~----  789 (897)
T 2dtg_E          714 FVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPE----  789 (897)
T ss_dssp             ----------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECCCC----
T ss_pred             EccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEeccCc----
Confidence             0                         0112347899999999999999999999999887522233333322100    


Q ss_pred             ccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeE
Q psy12426        513 DQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYE  592 (616)
Q Consensus       513 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~  592 (616)
                                                               ..+|.+|..+++...+.++|.|+|++|... ||.|.+|+
T Consensus       790 -----------------------------------------~~~p~~P~~l~~~~~~~~sv~LsW~~P~~~-nG~I~~Y~  827 (897)
T 2dtg_E          790 -----------------------------------------AKADDIVGPVTHEIFENNVVHLMWQEPKEP-NGLIVLYE  827 (897)
T ss_dssp             -----------------------------------------CCCCCCCCCCCCCSSSSSCCCCCCCCCCSC-SSCEEEEC
T ss_pred             -----------------------------------------cCCCCCCcceEEEeCCCCEEEEEECCCCCC-CCCEEEEE
Confidence                                                     134678888888888999999999998654 88999999


Q ss_pred             EEEeecCC
Q psy12426        593 VERRERTS  600 (616)
Q Consensus       593 i~~~~~~~  600 (616)
                      |.|+..++
T Consensus       828 V~y~~~~~  835 (897)
T 2dtg_E          828 VSYRRYGD  835 (897)
T ss_dssp             CCCBSSSB
T ss_pred             EEEEECCC
Confidence            99997765

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.87  E-value=9.1e-21  Score=180.35  Aligned_cols=212  Identities=18%  Similarity=0.234  Sum_probs=150.5

Q ss_pred             CCeEEEEEeCCC-CCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEE
Q psy12426        324 KSSCNLEWRAPR-DDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT  402 (616)
Q Consensus       324 ~~~~~l~W~~~~-~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~  402 (616)
                      ..++.|.|+++. ...+..+.+|.|+++..........    .....+.+|.+++.|.|+|.|.|..|.+.++    .+.
T Consensus        22 ~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~~~~~~----~~~~~~~~l~p~t~Y~~~V~A~n~~G~s~~s----~~~   93 (290)
T 3l5i_A           22 YRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYT----VNATKLTVNLTNDRYLATLTVRNLVGKSDAA----VLT   93 (290)
T ss_dssp             CEEEEEEECCCCHHHHCSCEEEEEEEEEETTSCCEEEE----ESSSEEEEEECSSCEEEEEEEEESSCBCCCE----EEE
T ss_pred             CceEEEEEccCCchhcCCceEeEEEEEEeCCcCceeEe----cCCcEEEEEcCCceEEEEEEEEcCCCCCCCc----eEE
Confidence            478999999633 2245689999999987654432111    1234567899999999999999999988653    222


Q ss_pred             ccCC-CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCC------ceEeEeecCCccEEEcCCCCC
Q psy12426        403 AKDP-FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP------WEKACIVPANITATSVPDLKE  475 (616)
Q Consensus       403 ~~~~-~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~------~~~~~~~~~~~~~~~l~~L~p  475 (616)
                      +... ..+|.++.++.+.... +++.|+|.+|..    .+.+|.|+|+..+..      |..  ........+.+.+|.|
T Consensus        94 ~~~~~~~~~~p~~~~~~~~~~-~si~l~W~~p~~----~i~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~p  166 (290)
T 3l5i_A           94 IPACDFQATHPVMDLKAFPKD-NMLWVEWTTPRE----SVKKYILEWCVLSDKAPCITDWQQ--EDGTVHRTYLRGNLAE  166 (290)
T ss_dssp             ECCTTCCCCCCCEEEEEEEET-TEEEEEEECCSS----CCCEEEEEEEEECSSSCCCCEEEE--EETTCSEEECCSCCCT
T ss_pred             eecccccCCCccceeEEEeCC-CeEEEEEeCCCC----CCCcEEEEEEECCCCCCCCcCeEE--ccCCCcceEEecCcCC
Confidence            2221 1345555667766654 799999998643    689999999876541      333  2345577889999999


Q ss_pred             CCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeec
Q psy12426        476 GEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDN  555 (616)
Q Consensus       476 ~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (616)
                      ++.|.|+|+|+|..|.|..+.    .....                                               ...
T Consensus       167 ~t~Y~~~V~A~n~~g~g~~~~----~~~~t-----------------------------------------------~~~  195 (290)
T 3l5i_A          167 SKCYLITVTPVYADGPGSPES----IKAYL-----------------------------------------------KQA  195 (290)
T ss_dssp             TCEEEEEEEEEETTEECCCEE----EEEES-----------------------------------------------SCC
T ss_pred             ccEEEEEEEEEeCCcccccEE----EEeEc-----------------------------------------------ccc
Confidence            999999999999999887321    11111                                               113


Q ss_pred             CCCCCCCCeEEeecCCcEEEEeeCCC-CCCCCceeeeEEEEeecCCC
Q psy12426        556 VPGKPSKPEATDVDKDHIKIKWQQPI-SNGGSAIKGYEVERRERTSG  601 (616)
Q Consensus       556 ~~~~P~~~~~~~~~~~~i~l~W~~p~-~~~~~~i~~Y~i~~~~~~~~  601 (616)
                      +|..|..+.+...+.++|.|+|+++. .+.+|.|.+|+|.|+..++.
T Consensus       196 ~P~~~p~~~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~  242 (290)
T 3l5i_A          196 PPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN  242 (290)
T ss_dssp             CCSSCCCEEEEEECSSCEEEEECCCCHHHHSSCCCEEEEEEEETTSC
T ss_pred             CCCCCCeeeEeeccCCEEEEEEcCCChhccCCEEEEEEEEEEeCCCC
Confidence            34444477788889999999999633 34589999999999977554

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.87  E-value=4.8e-21  Score=182.30  Aligned_cols=257  Identities=12%  Similarity=0.009  Sum_probs=158.7

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.|... ..++.|.+|++++|.|.+.|.    |+|+|++..+..  .+ ...                          ..
T Consensus         1 P~i~~~-~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~--~~-~~~--------------------------~~   46 (289)
T 3mjg_X            1 LVVTPP-GPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ--EM-AKA--------------------------QD   46 (289)
T ss_dssp             CCBCSS-CSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE--EE-EEC--------------------------TT
T ss_pred             CeecCC-CCeEEEeCCCcEEEEEeccce----EEEECCCCCccc--ce-ecc--------------------------CC
Confidence            677655 667889999999999999875    999999987741  00 000                          00


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecC---CC----------------ceeee---ecCccc
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK---KG----------------KCYHL---VGTLLK  139 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~---~p----------------~~~~~---~g~p~~  139 (616)
                      ......|.|.++...|.|.|+|.|.|..|......  ....+...   .|                ..+.+   +..|.+
T Consensus        47 ~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~--~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~p~~  124 (289)
T 3mjg_X           47 GTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDER--KRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQL  124 (289)
T ss_dssp             SCEEEEEEECSCCGGGCEEEEEECCC------CCC--EEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBSCTTS
T ss_pred             CceeEEEEEccCChhhCEEEEEEEcccCCCCcCcE--EeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcCCCCc
Confidence            00125789999999999999999999887632210  00011111   00                01111   135567


Q ss_pred             ccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCcee
Q psy12426        140 DSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYIN  219 (616)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~  219 (616)
                      .+.|++  ...-..   ....+       .....+.    ...|.|.|+|.|.|..+......  ..+.+... .+|.+.
T Consensus       125 ~v~w~~--~~~~~~---~~~~~-------~~~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~--~~l~v~~~-~~p~i~  185 (289)
T 3mjg_X          125 VVTLHE--KKGDVA---LPVPY-------DHQRGFS----GIFEDRSYICKTTIGDREVDSDA--YYVYRLQV-SSINVS  185 (289)
T ss_dssp             CEEEEE--SSCCSC---CCCCE-------ETTTEEE----ECCCSSEEEEEEEETTEEEECCC--EEEEECCC-CCCCCE
T ss_pred             eEEEEe--CCCCCc---cceee-------cCCcCee----eeccCcEEEEEEEeCCceeeeee--EEEEecCC-CCCCcE
Confidence            888988  310000   00000       0111222    36788999999998766533221  12332222 455554


Q ss_pred             ccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEe-----cCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN-----DDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       220 ~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      .. +....+..|+.+.|.|.+.+.|.+.+.|++++.............     ......|.|.++...|.|.|+|.|.|.
T Consensus       186 ~~-~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  264 (289)
T 3mjg_X          186 VN-AVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTES  264 (289)
T ss_dssp             EE-ESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEET
T ss_pred             Ee-CCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecC
Confidence            33 344678999999999999999999999998776543221111111     113468999999999999999999999


Q ss_pred             CCCceeeEEEEEecCCCCCC
Q psy12426        295 WGTDKGTAKVTVLDIPSPPE  314 (616)
Q Consensus       295 ~g~~~~~~~l~v~~~p~~p~  314 (616)
                      .|....++.|.+...|....
T Consensus       265 ~G~~~~~~~l~v~~~~~~~~  284 (289)
T 3mjg_X          265 VNDHQDEKAINITVVESGHH  284 (289)
T ss_dssp             TTTEEEEEEEEEEEEC----
T ss_pred             CCCceeEEEEEEEEEecCcc
Confidence            99999999999987765543

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.87  E-value=8.7e-20  Score=173.46  Aligned_cols=213  Identities=20%  Similarity=0.252  Sum_probs=164.8

Q ss_pred             EEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEec--CCCCCCCCccceeecCCeEEEEEeCCCCCCCCce
Q psy12426        265 IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD--IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI  342 (616)
Q Consensus       265 ~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~--~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i  342 (616)
                      +........+.|.+|.+...|.|++.|.|..|.+..+. ..+..  .+.+|.+ +.+.......+.|+|.++.    ..+
T Consensus        67 ~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~t~~~~~~P~~-l~~~~~~~~sv~l~W~~p~----~~~  140 (290)
T 3r8q_A           67 INLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ-GVVTTLENVSPPRR-ARVTDATETTITISWRTKT----ETI  140 (290)
T ss_dssp             EEECTTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEECCCCCCCCEE-EEEEEECSSCEEEEEECCS----CCC
T ss_pred             EEcCCCccEEEeCCCCCCCEEEEEEEEEeCCCCCCCcc-eeEecCCCCCCCce-eEEEEcCCCeEEEEEeCCC----Ccc
Confidence            33445567999999999999999999999888765443 23332  3445554 6777788999999999752    368


Q ss_pred             EEEEEEEEeCCCCCE-EEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEe
Q psy12426        343 LHYVVEKMDMETGRW-VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDW  421 (616)
Q Consensus       343 ~~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~  421 (616)
                      .+|.|+++..+...+ ..........+.+.+|.+++.|.|+|.|.|..|.+...    .+...   ..|.+|.++.+...
T Consensus       141 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~----~~~~~---t~p~~P~~l~~~~~  213 (290)
T 3r8q_A          141 TGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV----VIDAS---TAIDAPSNLRFLAT  213 (290)
T ss_dssp             CEEEEEEEESSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCE----EEEEE---CCCCCCEEEEEEEE
T ss_pred             cEEEEEEEECCCCcceEEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCE----EEEec---CCCCCCCccEEEee
Confidence            999999987655443 33334566789999999999999999999998886642    22332   34778889999989


Q ss_pred             cCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCC
Q psy12426        422 GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEP  494 (616)
Q Consensus       422 ~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~  494 (616)
                      +.+++.|+|.+|..    .+.+|.|+|+..++ .|............++|.+|.|++.|.|+|+|.|..|.|++
T Consensus       214 ~~~sv~l~W~~p~~----~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p  283 (290)
T 3r8q_A          214 TPNSLLVSWQPPRA----RITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP  283 (290)
T ss_dssp             ETTEEEEEEECCSS----CCCEEEEEEECTTSCCEECSSCCCTTCCEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred             CCCEEEEEEeCCCC----cccEEEEEEEeCCCCcceeEeccCCCccEEEECCCCCCCEEEEEEEEEeCCCcCCc
Confidence            99999999998642    58999999998776 44433344566889999999999999999999999998874

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.87  E-value=1.2e-19  Score=171.89  Aligned_cols=214  Identities=21%  Similarity=0.295  Sum_probs=168.0

Q ss_pred             EEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEE
Q psy12426        265 IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILH  344 (616)
Q Consensus       265 ~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~  344 (616)
                      .........+.|.+|.+...|.|++.|.|..|.+. ...+.+..+|.+|.+ +.+.....+.+.|+|.++.    ..+.+
T Consensus        61 ~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~-~~~~~~~t~p~~P~~-l~~~~~~~~sv~l~W~~p~----~~i~~  134 (283)
T 1tdq_A           61 FRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESD-ASSTQFTTEIDAPKN-LRVGSRTATSLDLEWDNSE----AEAQE  134 (283)
T ss_dssp             EEECTTCSEEEECSCCTTCEEEEEEEEEETTEECC-CEEEEEECCCCCCEE-EEEEEECSSCEEEEEECCS----SCCSE
T ss_pred             EEeCCCCCEEEecCCCCCCEEEEEEEEECCCCCCC-CeeEEEECCCCCCCc-eEEEecCCCeEEEEecCCC----CCccE
Confidence            33345567899999999999999999999877654 445556667777776 7778888999999999764    36899


Q ss_pred             EEEEEEeCCCCCEEEccc-cc---cceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEE
Q psy12426        345 YVVEKMDMETGRWVPMGD-VS---GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTD  420 (616)
Q Consensus       345 y~v~~~~~~~~~~~~~~~-~~---~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~  420 (616)
                      |.|+++..+...+..... ..   ...+.+.+|.+++.|.|+|.|.|..|.+.+.    .+...   ..|.+|.++.+..
T Consensus       135 Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~----~~~~~---t~~~~P~~l~~~~  207 (283)
T 1tdq_A          135 YKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPA----TMNAR---TELDSPRDLMVTA  207 (283)
T ss_dssp             EEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCE----EEEEE---CCCCCCEEEEEEE
T ss_pred             EEEEEEeCCCCcceEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcce----EEEec---CCCCCCCccEEeE
Confidence            999998876655533322 33   6789999999999999999999998876542    22222   3456788899999


Q ss_pred             ecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCC
Q psy12426        421 WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSK  496 (616)
Q Consensus       421 ~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~  496 (616)
                      .+.+++.|+|.+|.    +.+.+|.|+|+..++.+.. .........++|.+|.|++.|.|+|+|.|..|.|+++.
T Consensus       208 ~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~  278 (283)
T 1tdq_A          208 SSETSISLIWTKAS----GPIDHYRITFTPSSGISSE-VTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLEST  278 (283)
T ss_dssp             ECSSCEEEEEECCC----SCCSEEEEEEECSSSCCEE-EEEESSCSEEEECCCCTTCCEEEEEEEEETTEECCCEE
T ss_pred             ecCCEEEEEEeCCC----CcccEEEEEEEcCCCCeeE-EEeCCCccEEEECCCCCCCEEEEEEEEEcCCCCCccee
Confidence            99999999999753    3588999999987654333 34456788999999999999999999999999887654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.87  E-value=8.2e-21  Score=180.73  Aligned_cols=258  Identities=14%  Similarity=0.070  Sum_probs=164.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|. ..+.++.+.+|+.++|.|.+.|    .|+|++++.....     -.                            
T Consensus         4 ~p~i~-~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~-----~~----------------------------   45 (289)
T 3ejj_X            4 APVIE-PSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWT-----LD----------------------------   45 (289)
T ss_dssp             CCEEE-SCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSE-----EC----------------------------
T ss_pred             CcEec-CCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEE-----Ee----------------------------
Confidence            45565 4478899999999999999887    4999988753220     00                            


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceee-----cCCCceee------------eecCcccc-cE
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR-----AKKGKCYH------------LVGTLLKD-SI  142 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~-----~~~p~~~~------------~~g~p~~~-~~  142 (616)
                      .......|.|.++...|.|.|+|.|.|..|.....  ..+....     ...+..+.            ..+.+.+. +.
T Consensus        46 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~  123 (289)
T 3ejj_X           46 PESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT--IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVS  123 (289)
T ss_dssp             CCSSCCEEEESSCCGGGCEEEEEECCC-----CEE--EEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEE
T ss_pred             ccCCccEEEEeeeccccCEEEEEEEeccCCcceeE--EEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEE
Confidence            02234689999999999999999999887754322  1110000     01111111            11555544 99


Q ss_pred             EEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc-ccCCCceecc
Q psy12426        143 YEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA-KKVSPYINRD  221 (616)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~-~~~~P~~~~~  221 (616)
                      |++  .++...  ........     .....|.|.++..+|.|.|+|.|.|..+.. .+ ....+.+.. ...+|.+. .
T Consensus       124 W~~--~~~~~~--~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~-~~-~~~~l~V~~~~~~~p~i~-~  191 (289)
T 3ejj_X          124 LMR--EGGRQV--LRKTVYFF-----SPWRGFIIRKAKVLDSNTYVCKTMVNGRES-TS-TGIWLKVNRVHPEPPQIK-L  191 (289)
T ss_dssp             EEE--GGGEEC--CTTCCEEE-----ETTTEEEESSCCGGGCEEEEEEEEETTEEE-EC-CCEEEEEESSCCCCCEEE-E
T ss_pred             EEe--cCCeec--CCCccEEE-----CCCCCEEEeecccccCEEEEEEEEeCCCcc-cc-ccEEEEEEECCCCCCeEE-e
Confidence            987  433211  11111111     123479999999999999999999543221 11 112233322 22466664 3


Q ss_pred             CCcceEEEcCCeEEEEEEEee-ecCceeEEEECCeeecccCcEEEEec--CCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        222 QLSDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      .+....+..|+.+.|.|.+.+ .|.+.+.|++++..+...........  .....|.|.++...|.|.|+|.|.|..|..
T Consensus       192 ~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  271 (289)
T 3ejj_X          192 EPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR  271 (289)
T ss_dssp             ESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEE
T ss_pred             cCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCc
Confidence            345566789999999999998 78999999999988754322221111  113589999999999999999999999999


Q ss_pred             eeeEEEEEecCC
Q psy12426        299 KGTAKVTVLDIP  310 (616)
Q Consensus       299 ~~~~~l~v~~~p  310 (616)
                      ..++.|.+...+
T Consensus       272 ~~s~~L~~~~~~  283 (289)
T 3ejj_X          272 TATMNFQVVESH  283 (289)
T ss_dssp             EEEEEEECC---
T ss_pred             cccEEEEEEecc
Confidence            988888776544

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.86  E-value=4.8e-21  Score=194.72  Aligned_cols=318  Identities=12%  Similarity=0.049  Sum_probs=187.0

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCC---eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVP---HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p---~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      ||.+....+.+..+.+|+.+.|.|.+.|.|+|   .|+|+|+|..+.....+.                           
T Consensus        85 ~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~---------------------------  137 (450)
T 1z7z_I           85 TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG---------------------------  137 (450)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT---------------------------
T ss_pred             CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc---------------------------
Confidence            45555445777889999999999999999998   999999999887322100                           


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC------CCCCccee--ecCCCce-----------ee----ee
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS------DPTAPHIA--RAKKGKC-----------YH----LV  134 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~------~~~~~~~~--~~~~p~~-----------~~----~~  134 (616)
                          ......|.|.++...|.|.|+|.|.|..|.....      ........  ....|..           +.    ..
T Consensus       138 ----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~  213 (450)
T 1z7z_I          138 ----EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD  213 (450)
T ss_dssp             ----TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEE
T ss_pred             ----cccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEee
Confidence                1113478999999999999999999997753311      00110000  0112211           11    12


Q ss_pred             cC-c--ccccEEEEeeccCcccccccCCCceEecccCCCCCeEE-eecccCCCeE--EEEEEEEeCCCCCCCCCCCCCEE
Q psy12426        135 GT-L--LKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGK-VLDLIEGNQY--EFRVLAVNKGGPGEPSDPTAPHI  208 (616)
Q Consensus       135 g~-p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-i~~l~~~~~~--~y~c~a~n~~g~~~~s~~~~~~~  208 (616)
                      |. |  .+.+.|++  ++..+.   .  .   ... ......+. ..++..+|.|  .|+|.|.|..|....+   ..+.
T Consensus       214 g~~P~~~~~~~W~~--~~~~~~---~--~---~~~-~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~---~~l~  279 (450)
T 1z7z_I          214 GLFPVSEAQVHLAL--GDQRLN---P--T---VTY-GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL---QTVT  279 (450)
T ss_dssp             SCTTGGGCEEEEEE--TTEECC---C--E---EEE-ETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEE---EEEE
T ss_pred             CCCCCCceEEEEeC--CCEeCC---c--e---EEe-cCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEE---EEEE
Confidence            66 6  67788887  532221   1  1   111 11111111 2267899988  9999999988764321   1233


Q ss_pred             eccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        209 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       209 ~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      +... .+|.+..   ....+.+|+.+.|.|.+.  |.+.+.|  +|..+..        .+....|.|.++...|.|.|+
T Consensus       280 V~~~-~~p~i~~---~~~~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~--------~~~~~~L~i~~~~~~d~G~Y~  343 (450)
T 1z7z_I          280 IYSF-PAPNVIL---TKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP--------LGPRAQLLLKATPEDNGRSFS  343 (450)
T ss_dssp             EECC-CCCEEEE---SCSEEETTCEEEEEEEC----------------------------CCCCCEEEECCGGGTTCEEE
T ss_pred             EecC-CCCeEec---CCeeEeCCCcEEEEEecC--CCCEeEE--CCEEcCC--------CCceEEEEEecCcccCCceEE
Confidence            2221 2365532   245889999999999997  8889999  6665511        123348999999999999999


Q ss_pred             EEEEcCCC-C---ceeeEEEEEecCCCCCCCC--ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc
Q psy12426        289 LAVKNSWG-T---DKGTAKVTVLDIPSPPEGP--LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD  362 (616)
Q Consensus       289 c~a~n~~g-~---~~~~~~l~v~~~p~~p~~~--~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~  362 (616)
                      |.|.|..+ .   ....+.+.+..+|.....+  .......+..+.|.|...+.    +..  .+.|...+.   ... .
T Consensus       344 C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~----P~p--~i~W~~~g~---~~~-~  413 (450)
T 1z7z_I          344 CSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN----PLP--ELKCLKDGT---FPL-P  413 (450)
T ss_dssp             EEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEE----SCC--EEEEEETTT---EEC-C
T ss_pred             EEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccC----CCC--cEEEEECCc---ccC-C
Confidence            99997555 3   2356677777666544331  23455668888998875322    212  233333222   011 1


Q ss_pred             cccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        363 VSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       363 ~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                       ....+   .+...+.+.|+|.|.|..|...
T Consensus       414 -~g~~~---~v~~~d~G~Y~C~a~N~~G~~~  440 (450)
T 1z7z_I          414 -IGESV---TVTRDLEGTYLCRARSTQGEVT  440 (450)
T ss_dssp             -TTSCE---ECCGGGCEEEEEEEEETTEEEE
T ss_pred             -CCCeE---eEehhhCeEEEEEEEeCCCcee
Confidence             11122   4666788999999999998753

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.86  E-value=6.4e-21  Score=171.86  Aligned_cols=187  Identities=21%  Similarity=0.231  Sum_probs=144.5

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCC---CCCceEEEEEEEEeCCCCC--EEEccccccceEEeccccCCCeEEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDD---GGTDILHYVVEKMDMETGR--WVPMGDVSGTYTRAENLIEGHDYNFRV  383 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~---~~~~i~~y~v~~~~~~~~~--~~~~~~~~~~~~~i~~L~~~~~y~~~v  383 (616)
                      ++.+|.+ +.+...+.+++.|+|.+|...   ....+.+|.|+++..+...  +... ......+.+.+|.+++.|.|+|
T Consensus         4 P~~~P~~-l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V   81 (211)
T 3p4l_A            4 PMMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA-NATTLSYLVTGLKPNTLYEFSV   81 (211)
T ss_dssp             CCCCCEE-EEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCCEEE-EESSSEEEECSCCTTCEEEEEE
T ss_pred             CCCCCCC-EEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceEEEe-CCCceEEEecCcCCCCEEEEEE
Confidence            4456665 777788899999999976532   2457899999998754432  2222 3456689999999999999999


Q ss_pred             EEEecCcCCCCccccCCEEccCCCCCCC-CCCCCEEEEe--cCCeEEEEecCCCCCCCCcceeEEEEEeeCCC----Cce
Q psy12426        384 KAVNKIGESLPLVCQSPITAKDPFGRPD-RPGQPTVTDW--GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWE  456 (616)
Q Consensus       384 ~a~n~~g~~~~~~~s~~~~~~~~~~~p~-~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~----~~~  456 (616)
                      .|.|..|.+.+   +..+.+.+....|. +|.++.+...  +.+++.|+|.+|...++ .+.+|.|+|+..+.    .|.
T Consensus        82 ~A~n~~g~~~~---S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~  157 (211)
T 3p4l_A           82 MVTKGRRSSTW---SMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWV  157 (211)
T ss_dssp             EEEETTEECCC---CCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCCS-CCCEEEEEEESCTTSCGGGSE
T ss_pred             EEEcCCCCCcc---ceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCCC-CEEEEEEEEEECCCCCCCceE
Confidence            99999998776   45566666667776 7888888877  47899999998765444 79999999997765    233


Q ss_pred             EeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEE
Q psy12426        457 KACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       457 ~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~  502 (616)
                      . ....+....++|.+|.|++.|.|+|+|.|..|.|++|.+..+.+
T Consensus       158 ~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~  202 (211)
T 3p4l_A          158 I-EPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRT  202 (211)
T ss_dssp             E-EEEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEEC
T ss_pred             E-EEecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccC
Confidence            2 34556788999999999999999999999999999998765544

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.86  E-value=8.5e-21  Score=180.58  Aligned_cols=212  Identities=21%  Similarity=0.239  Sum_probs=158.0

Q ss_pred             EecCCCCCCcEEEEEEEEcCCCCceeeEEEEEec---CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEe
Q psy12426        275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD---IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMD  351 (616)
Q Consensus       275 ~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~---~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~  351 (616)
                      .+..+.+...|.|++.|.|..|.+..+.......   +|.++.+ +.+... .+++.|+|.++..    .+.+|.|+++.
T Consensus        64 ~~~~l~p~t~Y~~~V~A~n~~G~s~~s~~~~~~~~~~~~~p~~~-~~~~~~-~~si~l~W~~p~~----~i~~Y~v~~~~  137 (290)
T 3l5i_A           64 KLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMD-LKAFPK-DNMLWVEWTTPRE----SVKKYILEWCV  137 (290)
T ss_dssp             EEEEEECSSCEEEEEEEEESSCBCCCEEEEECCTTCCCCCCCEE-EEEEEE-TTEEEEEEECCSS----CCCEEEEEEEE
T ss_pred             EEEEEcCCceEEEEEEEEcCCCCCCCceEEeecccccCCCccce-eEEEeC-CCeEEEEEeCCCC----CCCcEEEEEEE
Confidence            3455677889999999999998775543322222   1222222 333333 4799999997643    68999999986


Q ss_pred             CCCC-----CEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeE
Q psy12426        352 METG-----RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHV  426 (616)
Q Consensus       352 ~~~~-----~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v  426 (616)
                      ....     .|..........+.+.+|.+++.|.|+|.|.|..|.+..    ..+...+....|..|.++.+...+.+++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~----~~~~~~t~~~~P~~~p~~~~~~~~~~sv  213 (290)
T 3l5i_A          138 LSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSP----ESIKAYLKQAPPSKGPTVRTKKVGKNEA  213 (290)
T ss_dssp             ECSSSCCCCEEEEEETTCSEEECCSCCCTTCEEEEEEEEEETTEECCC----EEEEEESSCCCCSSCCCEEEEEECSSCE
T ss_pred             CCCCCCCCcCeEEccCCCcceEEecCcCCccEEEEEEEEEeCCccccc----EEEEeEccccCCCCCCeeeEeeccCCEE
Confidence            4432     466666566677888999999999999999999998763    2334445567777777888888999999


Q ss_pred             EEEecCCC-CCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCC
Q psy12426        427 DLEWTPPK-KDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKAS  498 (616)
Q Consensus       427 ~l~W~~p~-~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~  498 (616)
                      .|+|.++. ...++.|.+|.|+|+..++.|.. ..+......++|.+|.|++.|.|+|+|.|..| |+.|...
T Consensus       214 ~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~~  284 (290)
T 3l5i_A          214 VLEWDQLPVDVQNGFIRNYTIFYRTIIGNETA-VNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEF  284 (290)
T ss_dssp             EEEECCCCHHHHSSCCCEEEEEEEETTSCCEE-EEEETTCSEEEECSCCTTCEEEEEEEEEETTE-EEECCCE
T ss_pred             EEEEcCCChhccCCEEEEEEEEEEeCCCCeEE-EEeCCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCce
Confidence            99999543 23455799999999988765543 34467788999999999999999999999999 7666543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.86  E-value=6.4e-21  Score=178.65  Aligned_cols=231  Identities=12%  Similarity=0.117  Sum_probs=157.5

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      .|.|... |.++.|.+|+.+.|.|.+.|.|.| .|+|+|+|..+..                                  
T Consensus         1 kP~i~~~-p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~----------------------------------   45 (262)
T 3rjd_A            1 KAVITLQ-PPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT----------------------------------   45 (262)
T ss_dssp             CCEEEES-SCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC----------------------------------
T ss_pred             CCeEecC-CCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec----------------------------------
Confidence            4777755 788899999999999999999998 9999999987751                                  


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCC-cce-ee-------cCCCceee--e-ecCcccccEEEEee
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA-PHI-AR-------AKKGKCYH--L-VGTLLKDSIYEQLK  147 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~-~~~-~~-------~~~p~~~~--~-~g~p~~~~~~~~~~  147 (616)
                          ....|.|.++...|.|.|+|.|.|..+......... ... ..       ...+..+.  . .+.|.+.+.|++  
T Consensus        46 ----~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~--  119 (262)
T 3rjd_A           46 ----STPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR--  119 (262)
T ss_dssp             ----CSSEEEESSCCGGGCEEEEEEESSSCCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEE--
T ss_pred             ----cCCeEEEecCCcccCeEEEEEEecCCccccEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEE--
Confidence                135678888888888888888876554321110000 000 00       00011111  1 156777899998  


Q ss_pred             ccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceE
Q psy12426        148 RSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIK  227 (616)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~  227 (616)
                      ++..+.             .......|.|.++..+|.|.|+|.|.|..+....   ...+.+.....+|.+....  ...
T Consensus       120 ~g~~~~-------------~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~---~~~l~V~~~~~~p~~~~~~--~~~  181 (262)
T 3rjd_A          120 NGKAFK-------------FFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSA---GISVTVKELFPAPVLNASV--TSP  181 (262)
T ss_dssp             TTEEEE-------------EEEECCCEEESSCCGGGCEEEEEEEESSSEEEEE---CEEEEEECSSCCCEEEESS--CSS
T ss_pred             CCcccc-------------ccCCCCeEEEEECChhhCEEEEEEEeCCCCcccc---ceEEEeccCCCCCeEeecC--cee
Confidence            421111             1112347999999999999999999998754221   1224443333456554332  456


Q ss_pred             EEcCCeEEEEEEEeeecC-c----eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        228 VRAGSNFEFDINVIGEPI-P----TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       228 v~~g~~~~l~c~~~~~p~-~----~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      +..|+.+.|.|.+.+.|. +    .+.|++++..+...        .....|.|.++...|.|.|+|.|.|..|..
T Consensus       182 ~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          182 LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR--------NTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             EETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE--------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             ecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc--------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence            889999999999999876 4    37889998876421        223489999999999999999999999964

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.86  E-value=1.8e-21  Score=193.09  Aligned_cols=297  Identities=13%  Similarity=0.088  Sum_probs=183.7

Q ss_pred             eeeccccCC---------CCCceEecCc-ccCCeEEEEEEEEcCCCCCCCCCCCCcceeec----CCCceee--------
Q psy12426         75 WEKCAQTEG---------DTPKGKVLDL-IEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA----KKGKCYH--------  132 (616)
Q Consensus        75 w~~~~~~~~---------~~~~l~i~~l-~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~----~~p~~~~--------  132 (616)
                      |++++....         ..+.|.|.++ ...|+|.|+|.|.|..|...............    ..+..+.        
T Consensus        42 W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~  121 (384)
T 3kld_A           42 WKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV  121 (384)
T ss_dssp             EEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEE
T ss_pred             EEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeE
Confidence            988877632         1345666665 78899999999999988643221000000000    0111111        


Q ss_pred             ee-----cCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCE
Q psy12426        133 LV-----GTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH  207 (616)
Q Consensus       133 ~~-----g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~  207 (616)
                      +.     +.+...|.|.+  ++...   ..... .   ........|.|.++...|.|.|+|.|.|..|..........+
T Consensus       122 l~C~~~~~~~~~~~~W~~--~~~~~---~~~~~-~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~  192 (384)
T 3kld_A          122 LLCGPPPHSGELSYAWIF--NEYPS---YQDNR-R---FVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPL  192 (384)
T ss_dssp             ECCCCCSEESCEEEEEEE--TTEEC---CCSSS-E---EECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEE
T ss_pred             EecCCCCCCCCeEEEEEE--CCCCC---Eeecc-E---EEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEE
Confidence            11     33456788888  42111   01111 1   112334579999999999999999999987653211111111


Q ss_pred             Eecc----ccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCe-eecccCcEEEEecCCceEEEecCCCCC
Q psy12426        208 IARA----KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI-TIISKDRFKIVNDDKSTKLKVFDSKRG  282 (616)
Q Consensus       208 ~~~~----~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~l~i~~l~~~  282 (616)
                      .+..    ....|.+....+....+..|+.+.|.|.+.|.|.|.+.|++++. .+....  ..  ......|.|.++...
T Consensus       193 ~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~--~~~~~~L~I~~v~~~  268 (384)
T 3kld_A          193 ILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKA--RR--HKSNGILEIPNFQQE  268 (384)
T ss_dssp             EEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTC--EE--CTTSCEEEECSCCGG
T ss_pred             EEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccc--ee--cCCCcEEEECCCChh
Confidence            1111    12234444455667788999999999999999999999999544 333221  11  122348999999999


Q ss_pred             CcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC----CCEE
Q psy12426        283 DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET----GRWV  358 (616)
Q Consensus       283 ~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~----~~~~  358 (616)
                      |.|.|+|.|.|..|.......+.+..+|.....+-......+..+.|.|.....    +...  +.|...+.    ....
T Consensus       269 D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~----P~p~--i~W~k~g~~l~~~~~~  342 (384)
T 3kld_A          269 DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGR----PKPT--YRWLKNGDPLLTRDRI  342 (384)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEE----SCCE--EEEEETTEECCCBTTE
T ss_pred             hCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCcc----CCCe--EEEEECCEECCCCccE
Confidence            999999999999998888888888776653332223444567788888875322    1122  22222111    0000


Q ss_pred             EccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        359 PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       359 ~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      .   .....+.|..+...+.+.|+|.|.|..|...
T Consensus       343 ~---~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~  374 (384)
T 3kld_A          343 Q---IEQGTLNITIVNLSDAGMYQCVAENKHGVIF  374 (384)
T ss_dssp             E---EETTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             E---EeCCEEEEeecChhhCEEEEEEEEeCCceEE
Confidence            1   1234788999999999999999999999753

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.86  E-value=7e-21  Score=169.36  Aligned_cols=130  Identities=25%  Similarity=0.391  Sum_probs=98.4

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.+++..|.|.|+|.|.|..|....+   ..+.+.....+|.+. ..+....+..|+.+.|.|.+.+.|.+.+.|++
T Consensus        64 ~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~---~~l~v~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~  139 (194)
T 2a38_A           64 KLTIPAVTKANSGRYSLKATNGSGQATST---AELLVKAETAPPNFV-QRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYR  139 (194)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEE---EEEEEECCCEEEEEE-ECCCCEEECTTEEEEEEEEEEEESCCEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEcCCceEeEE---EEEEEccCCCCCEEE-eCCccEEEcCCCEEEEEEEEEEecCCeEEEEE
Confidence            56666666777777777776665542211   112222222345443 33456788999999999999999999999999


Q ss_pred             CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      ++..+....++.+...+....|.|.++...|.|.|+|.|.|..|.....+.|.|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          140 DGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             TTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            999988888888877777778999999999999999999999998887777765

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.85  E-value=1.1e-19  Score=164.26  Aligned_cols=179  Identities=20%  Similarity=0.250  Sum_probs=151.1

Q ss_pred             cCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc--CcEEEEecCCceEEEecCCCCCCcEEEEEE
Q psy12426        213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       213 ~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~  290 (616)
                      ..+|.|.  .+.++.+..|+.+.|.|.+.+.|.+.+.|++++..+...  .++.+...+....|.|.++...|.|.|+|.
T Consensus        17 ~~~P~~~--~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   94 (215)
T 3mtr_A           17 MYAPKLQ--GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCT   94 (215)
T ss_dssp             CEEEEEE--CCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEE
T ss_pred             ecCCccc--CCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEE
Confidence            3456662  345688999999999999999999999999999988755  466666666678999999999999999999


Q ss_pred             EEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc-----ccc
Q psy12426        291 VKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-----VSG  365 (616)
Q Consensus       291 a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~-----~~~  365 (616)
                      |.|..|.....+.+.+..+|.+|.. +.+ ......+.|.|..+...++.++..|.++++..+...|.....     ...
T Consensus        95 a~n~~g~~~~~~~l~v~~~P~~p~~-~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~  172 (215)
T 3mtr_A           95 AVNRIGQESLEFILVQADTPSSPSI-DQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME  172 (215)
T ss_dssp             EECSSCEEEEEEEEEECCCCCCCEE-EEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHH
T ss_pred             EEECCCceEEEEEEEECCCCCCCcc-eEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccccccccccccc
Confidence            9999999988999999998888865 444 456788999999888778889999999999887777875532     223


Q ss_pred             ceEEeccccCCCeEEEEEEEEecCcCCCCc
Q psy12426        366 TYTRAENLIEGHDYNFRVKAVNKIGESLPL  395 (616)
Q Consensus       366 ~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~  395 (616)
                      ..+.|.+|.+++.|.|+|.|.|..|.+.++
T Consensus       173 ~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S  202 (215)
T 3mtr_A          173 GIVTIVGLKPETTYAVRLAALNGKGLGEIS  202 (215)
T ss_dssp             TEEEEECCCTTCEEEEEEEEEESSCBCCCC
T ss_pred             ccEEECCCCCCCEEEEEEEEEeCCcccCcc
Confidence            789999999999999999999999998875

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.85  E-value=1.6e-19  Score=172.66  Aligned_cols=136  Identities=17%  Similarity=0.165  Sum_probs=106.0

Q ss_pred             CceEEEecCC-CCCCcEEEEEEEEcCCCCcee-eEEEEE--ecCCCCCCCCccceee--cCCeEEEEEeCCCCCCCCceE
Q psy12426        270 KSTKLKVFDS-KRGDSGIYTLAVKNSWGTDKG-TAKVTV--LDIPSPPEGPLKPSNI--TKSSCNLEWRAPRDDGGTDIL  343 (616)
Q Consensus       270 ~~~~l~i~~l-~~~~~g~y~c~a~n~~g~~~~-~~~l~v--~~~p~~p~~~~~~~~~--~~~~~~l~W~~~~~~~~~~i~  343 (616)
                      ....+.|.+| .+...|.|+|.|.|..|.... ...+..  ..+|.+|.. +.+...  ..+++.|+|.+|...+ ..+.
T Consensus       156 ~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~-~~v~~~~~~~~sv~l~W~~p~~~~-~~i~  233 (303)
T 1i1r_A          156 TPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHN-LSVINSEELSSILKLTWTNPSIKS-VIIL  233 (303)
T ss_dssp             CTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEE-EEEECCSSSSSCEEEEEECCGGGG-TSCE
T ss_pred             CceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcc-eEEEEecCCCCEEEEEECCCCCCC-cccE
Confidence            3458899999 899999999999999987642 222221  135666665 444433  5689999999877643 4799


Q ss_pred             EEEEEEEeCCCCCEEEcc----ccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCC
Q psy12426        344 HYVVEKMDMETGRWVPMG----DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF  407 (616)
Q Consensus       344 ~y~v~~~~~~~~~~~~~~----~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~  407 (616)
                      +|.|+|+..+...|....    ......+.+.+|.+++.|.|+|+|.|..|.|.++.++..+.+.+.+
T Consensus       234 ~Y~v~y~~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~e  301 (303)
T 1i1r_A          234 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE  301 (303)
T ss_dssp             EEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECCC
T ss_pred             EEEEEEEeCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCCc
Confidence            999999988777888764    3345789999999999999999999999999999999888877654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.85  E-value=2.3e-22  Score=196.32  Aligned_cols=264  Identities=14%  Similarity=0.074  Sum_probs=174.5

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEe-------eecCCeeeeeeCCeeeeeccc--eEEEeecCCCCCceeEeeeccCCc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANII-------GEPVPHVDWRAGGNPLNLRPI--WEKCAQTEGDTPKGKVLDLIEGNH   72 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~-------g~P~p~v~W~~~~~~l~~~G~--Y~C~a~n~~~~~~~~v~~~~~~~~   72 (616)
                      |.+.. .|+++.|.+|+.|.|.|.+.       |.|.|.|+|+|++..+...+.  ++..                    
T Consensus        19 p~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~--------------------   77 (339)
T 3o4o_C           19 RFRGR-HYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW--------------------   77 (339)
T ss_dssp             EEEEE-CSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEE--------------------
T ss_pred             HhhCc-CceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEE--------------------
Confidence            44553 48899999999999999998       999999999999987543221  1111                    


Q ss_pred             cceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcc--------------eeecCCCceee------
Q psy12426         73 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH--------------IARAKKGKCYH------  132 (616)
Q Consensus        73 p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~--------------~~~~~~p~~~~------  132 (616)
                                .....|.|.++...|.|.|+|.|.|..|.........+.              .+.......+.      
T Consensus        78 ----------~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~  147 (339)
T 3o4o_C           78 ----------AQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSE  147 (339)
T ss_dssp             ----------EETTEEEESSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTT
T ss_pred             ----------eeCCeEEECCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcc
Confidence                      114589999999999999999999988744332100000              00001111111      


Q ss_pred             -eecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCC-CCCCCEEec
Q psy12426        133 -LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS-DPTAPHIAR  210 (616)
Q Consensus       133 -~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s-~~~~~~~~~  210 (616)
                       ..|.|.+.+.|++  ++..+.  .......    .......|.|.++..+|.|.|+|.|.|..|..... .....+.+.
T Consensus       148 ~~~g~p~~~v~W~k--~g~~~~--~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~  219 (339)
T 3o4o_C          148 FTRDKTDVKIQWYK--DSLLLD--KDNEKFL----SVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIK  219 (339)
T ss_dssp             TCCSSSCCCBCCEE--SSCBCC--TTCSSEE----ECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEE
T ss_pred             cccCCCCceEEEec--CCeeCC--CCCceeE----EcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEE
Confidence             1256788999998  533322  1111111    11233589999999999999999999987753211 111122222


Q ss_pred             c--ccCCCceeccCCcceEEEcCCeEEEEEEE---eeec-CceeEEEECCeeecc---------cCcEEEEecCC---ce
Q psy12426        211 A--KKVSPYINRDQLSDIKVRAGSNFEFDINV---IGEP-IPTKEWLCNDITIIS---------KDRFKIVNDDK---ST  272 (616)
Q Consensus       211 ~--~~~~P~~~~~~~~~~~v~~g~~~~l~c~~---~~~p-~~~~~W~~~~~~~~~---------~~~~~~~~~~~---~~  272 (616)
                      .  ...+|.+. ..+....+..|+.+.|.|.+   .+.| .+.+.|++++..+..         ..++.+...+.   ..
T Consensus       220 ~~~~~~~P~i~-~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  298 (339)
T 3o4o_C          220 KKKEETIPVII-SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEV  298 (339)
T ss_dssp             CCCCCCCCEEC-CCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEE
T ss_pred             cCCCCCCCEEe-cCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEE
Confidence            2  12356664 33667788899999999999   8988 889999999876532         22222222222   12


Q ss_pred             EEEecCCCCCCc-EEEEEEEEcCCCCceeeEEEE
Q psy12426        273 KLKVFDSKRGDS-GIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       273 ~l~i~~l~~~~~-g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      .|.|.++...|. |.|+|.|.|..|.....+.+.
T Consensus       299 ~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~  332 (339)
T 3o4o_C          299 PLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK  332 (339)
T ss_dssp             CCEECSSCCCSCCCCCEEEEEETTEEECCBCCCC
T ss_pred             EEEEEEechhhcCccEEEEEEeccCceEEEEEhh
Confidence            799999999997 999999999999877655443

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.85  E-value=6.8e-22  Score=193.76  Aligned_cols=268  Identities=9%  Similarity=-0.010  Sum_probs=140.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecC-----------CeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccce
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPV-----------PHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIW   75 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~-----------p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w   75 (616)
                      ..++++.|.+|+.|.|.|.+.|.|.           |.|+|+|++.......    ...  ......++           
T Consensus        12 ~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~----~~~--~~~~~~~~-----------   74 (349)
T 4dep_C           12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEE----PIN--FRLPENRI-----------   74 (349)
T ss_dssp             CCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEE----ECC--CCCGGGCE-----------
T ss_pred             ceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccc----ccc--ccccCceE-----------
Confidence            4567889999999999999997664           9999999985321000    000  00000000           


Q ss_pred             eeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcc--------------eeec--CCCceeee------
Q psy12426         76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH--------------IARA--KKGKCYHL------  133 (616)
Q Consensus        76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~--------------~~~~--~~p~~~~~------  133 (616)
                            ......|.|.++...|+|.|+|.|.|..|....+....+.              ....  .....+..      
T Consensus        75 ------~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~  148 (349)
T 4dep_C           75 ------SKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGY  148 (349)
T ss_dssp             ------EEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTS
T ss_pred             ------eecCCEEEEccCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCccc
Confidence                  1124589999999999999999999987754422100000              0000  00111111      


Q ss_pred             -ecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCC-CCCCCCCCCCCEEecc
Q psy12426        134 -VGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG-GPGEPSDPTAPHIARA  211 (616)
Q Consensus       134 -~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~-g~~~~s~~~~~~~~~~  211 (616)
                       .|.|.+.+.|++  ++..++   .....      ......|.|.++..+|.|.|+|.|.|.. |..........+.+..
T Consensus       149 ~~g~p~~~v~W~k--~~~~l~---~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~  217 (349)
T 4dep_C          149 FPSSVKPTITWYM--GCYKIQ---NFNNV------IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVG  217 (349)
T ss_dssp             SCTTSCCEEEEEE--TTEECC---SCSSE------EEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             ccCCCCceEEEee--CCEECC---Cccce------eecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEc
Confidence             257888999998  532221   11111      1122579999999999999999999986 3320011112222222


Q ss_pred             cc---CCCceeccCCcc-eEEEcCCeEEEEEEEe----eecCceeEEEECCeeecc-cCcEEEEe------cCC---ceE
Q psy12426        212 KK---VSPYINRDQLSD-IKVRAGSNFEFDINVI----GEPIPTKEWLCNDITIIS-KDRFKIVN------DDK---STK  273 (616)
Q Consensus       212 ~~---~~P~~~~~~~~~-~~v~~g~~~~l~c~~~----~~p~~~~~W~~~~~~~~~-~~~~~~~~------~~~---~~~  273 (616)
                      ..   .+|.+....... ..+..|+.+.|.|.+.    +.|.+.+.|++++..+.. ..++.+..      .+.   ...
T Consensus       218 ~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (349)
T 4dep_C          218 SPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQI  297 (349)
T ss_dssp             CGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEEC
T ss_pred             cCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEE
Confidence            11   156653322222 2788999999999999    568899999999987754 22222110      011   235


Q ss_pred             EEecCCCCCCc-EEEEEEEEcCCCCceeeEEEEEec
Q psy12426        274 LKVFDSKRGDS-GIYTLAVKNSWGTDKGTAKVTVLD  308 (616)
Q Consensus       274 l~i~~l~~~~~-g~y~c~a~n~~g~~~~~~~l~v~~  308 (616)
                      |.|.++...|. |.|+|.|.|..|.....+.|.+..
T Consensus       298 L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          298 LSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             C-------------CEEEEECSSCEEEEECC-----
T ss_pred             EEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence            99999999999 999999999999988888887754

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.85  E-value=2.7e-20  Score=166.02  Aligned_cols=133  Identities=20%  Similarity=0.325  Sum_probs=98.0

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.+++..|.|.|+|.|.|..|..... ..+.+...+....|.+ ...+....+..|+.+.|.|.+.+.|.+.+.|++
T Consensus        63 ~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~V~~~p~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~  140 (197)
T 2j8h_A           63 QLIIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKT-LEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK  140 (197)
T ss_dssp             EEEECSCCGGGCSEEEEEEEETTEEEEEE-EEEEEEEEEEECCSSC-BTTBEEEEEETTCCCEEEEEEEEESCCEEEEEE
T ss_pred             EEEECcCCHHhCEEEEEEEEECCCceeEE-EEEEEcCCCcCCCCcc-ccccCeEEEeCCCEEEEEEEEEecCCCcEEEEE
Confidence            56677777777777777777765542211 1111111111122222 222355778899999999999999999999999


Q ss_pred             CCeeecccCcEEEEecCCceEEEecC-CCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        253 NDITIISKDRFKIVNDDKSTKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~i~~-l~~~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      ++..+....++.+...+....|.|.+ +...|.|.|+|.|.|..|.....+.|.|.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          141 GQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             SSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            99998877888887777778999999 99999999999999999988888887765

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.85  E-value=1.2e-20  Score=182.84  Aligned_cols=242  Identities=13%  Similarity=0.087  Sum_probs=146.1

Q ss_pred             CCCCceEecCCCeEEEEEEEeee-cCCeeeeeeCCee-------------------------------eee-------cc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGE-PVPHVDWRAGGNP-------------------------------LNL-------RP   47 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~-------------------------------l~~-------~G   47 (616)
                      ++|+++.+.+|+.|.|.|.+.|. |.|.|+|+|++..                               |.+       +|
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G   87 (327)
T 2wng_A            8 QPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAG   87 (327)
T ss_dssp             CCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCE
T ss_pred             cCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCe
Confidence            56899999999999999999997 9999999998643                               211       99


Q ss_pred             ceEEEeecCCCCCc-------eeEeeeccCCccceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCc
Q psy12426         48 IWEKCAQTEGDTPK-------GKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP  120 (616)
Q Consensus        48 ~Y~C~a~n~~~~~~-------~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~  120 (616)
                      .|+|.|.|..+...       ..+. +.....++.+..     +     -..+..|+...+.|.+.              
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~~~l~-V~~~p~~p~i~~-----~-----~~~~~~g~~~~l~C~~~--------------  142 (327)
T 2wng_A           88 TYYCVKFRKGSPDTEFKSGAGTELS-VRAKPSAPVVSG-----P-----AARATPQHTVSFTCESH--------------  142 (327)
T ss_dssp             EEEEEEEESSTTCEEEEECCCEEEE-EEBCCCCCEEEC-----C-----SSCBCTTCEEEEEEEEE--------------
T ss_pred             EEEEEeecCCCcceeEeecCcEEEE-EEecCCCceeec-----c-----ccccCCCCEEEEEEEEe--------------
Confidence            99999999754311       1111 111111111110     0     12356789999999998              


Q ss_pred             ceeecCCCceeeeecCccc--ccEEEEeeccCcccccccCCCceEecccCCC----CCeEEeecccCCCeEEEEEEEEeC
Q psy12426        121 HIARAKKGKCYHLVGTLLK--DSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD----TPKGKVLDLIEGNQYEFRVLAVNK  194 (616)
Q Consensus       121 ~~~~~~~p~~~~~~g~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~~~y~c~a~n~  194 (616)
                                    |.|.+  .+.|++  ++..+.    .............    ...|.|.....++.|.|+|.|.|.
T Consensus       143 --------------g~p~~~~~v~W~k--~g~~l~----~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~  202 (327)
T 2wng_A          143 --------------GFSPRDITLKWFK--NGNELS----DFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHV  202 (327)
T ss_dssp             --------------EEBSSCCEEEEEE--TTEECC----CEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECT
T ss_pred             --------------CccCCCcEEEEEE--CCEEcc----ccccccccccCCCceEEEEEEEEechhcCcCceEEEEEecc
Confidence                          55444  788988  532221    1100000000011    114566666677789999999998


Q ss_pred             CCCCCCCCCCCCEEec-cccCCCceeccCCcceEEEcCCeEEEEEEEeeecCc--eeEEEECCeeecccCcEEEEecC-C
Q psy12426        195 GGPGEPSDPTAPHIAR-AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKIVNDD-K  270 (616)
Q Consensus       195 ~g~~~~s~~~~~~~~~-~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~-~  270 (616)
                      .|......  ....+. ....+|.+..... .  +.+|+.+.|.|.+.+.+++  .+.|++++..+.......+...+ +
T Consensus       203 ~~~~~~~~--~~~~~~~~v~~~P~i~~~~~-~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g  277 (327)
T 2wng_A          203 TLQGDPLR--GTANLSETIRVPPTLEVTQQ-P--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDG  277 (327)
T ss_dssp             TSCSCCEE--EEEEGGGTBCBCCEEEEEEE-C--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTS
T ss_pred             ccCCCccc--ceEEeccccCCCCEEEEecC-C--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCC
Confidence            77632110  011111 1345676643222 1  6789999999999996444  89999999987543221122111 1


Q ss_pred             c----eEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        271 S----TKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       271 ~----~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      .    ..|.|.++...|.|.|+|.|.|..|..
T Consensus       278 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          278 TYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             CEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             cEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            1    468899999999999999999988765

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.84  E-value=4.4e-21  Score=192.66  Aligned_cols=215  Identities=18%  Similarity=0.265  Sum_probs=154.2

Q ss_pred             CCCcEEEEEEEEcCCCCceeeE-EEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeC--CCCCE
Q psy12426        281 RGDSGIYTLAVKNSWGTDKGTA-KVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM--ETGRW  357 (616)
Q Consensus       281 ~~~~g~y~c~a~n~~g~~~~~~-~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~--~~~~~  357 (616)
                      ..+.|.|.|.+.|..+...... ......+|.+|.+ + ...++.+++.|+|.+|...++..+..|.|+++..  ....|
T Consensus       304 s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~n-l-~~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~~~  381 (536)
T 3fl7_A          304 PSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHY-L-TAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGEC  381 (536)
T ss_dssp             CCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSC-E-EEECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CCCE
T ss_pred             CCCCCccEEEEeccccccCCCccccccccCCCcccc-e-EEEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCCcc
Confidence            4567889999999887654322 2223457777776 5 3467889999999998887777899999999863  22233


Q ss_pred             EEccc----------cccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEE
Q psy12426        358 VPMGD----------VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVD  427 (616)
Q Consensus       358 ~~~~~----------~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~  427 (616)
                      ..+..          .....+.+.+|.+++.|.|+|.|.|..|.+.++..+..+.+.+   .+.+|..+.+...+.+++.
T Consensus       382 ~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T---~~~~Ps~~~~~~~s~tSV~  458 (536)
T 3fl7_A          382 GPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSI---NQTEPPKVRLEGRSTTSLS  458 (536)
T ss_dssp             EECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEEC---CSCCCCEEEEEECCC-CCE
T ss_pred             cccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEee---cccCCCCCceeeccCCeEE
Confidence            22211          2467899999999999999999999998754322345555554   3445656666778899999


Q ss_pred             EEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEE
Q psy12426        428 LEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       428 l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~  502 (616)
                      |+|.+|... ++.|.+|.|+|+..++. ...........+++|.+|.|++.|.|+|+|.|..|.|++|....+.|
T Consensus       459 LsW~pP~~~-ng~I~~Y~V~y~~~~~~-~~~~~v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~T  531 (536)
T 3fl7_A          459 VSWSIPPPQ-QSRVWKYEVTYRKKGDS-NSYNVRRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQT  531 (536)
T ss_dssp             EEEECCTTT-TTTCSEEEEEEEEC--C-CCCEEEEESSSEEECCSCCSSCEEEEEEEEECC---CEECCCEEEEC
T ss_pred             EEEECCcCC-CCcccEEEEEEEECCCC-ceEEEEcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEEe
Confidence            999988544 45799999999987653 22233445678999999999999999999999999999988765544

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.84  E-value=3.1e-20  Score=168.00  Aligned_cols=196  Identities=19%  Similarity=0.168  Sum_probs=146.5

Q ss_pred             ecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE-EEccccccceEEeccc-cCCCeEEEEEE
Q psy12426        307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPMGDVSGTYTRAENL-IEGHDYNFRVK  384 (616)
Q Consensus       307 ~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L-~~~~~y~~~v~  384 (616)
                      ..+|.+|.+ +.+.......+.|+|.++...+.  ...|.|+++......+ ..........+.+.+| .+++.|.|+|.
T Consensus         5 g~pP~~P~~-l~~~~~~~~sv~l~W~~p~~~~~--~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~t~Y~~~V~   81 (215)
T 1bqu_A            5 GLPPEKPKN-LSCIVNEGKKMRCEWDGGRETHL--ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVE   81 (215)
T ss_dssp             CCCCCCCEE-EEEEEETTSCCEEEEECCSCCSS--CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEE
T ss_pred             CCCCCCCEe-eEeEECCCCcEEEEcCCCCCCCC--CceEEEEEEEcCCCccccccccCCcceEEEcCCccccccEEEEEE
Confidence            356777776 67777777899999998776543  4799999976532211 1112344578999999 99999999999


Q ss_pred             EEecCcCCCCccccCCEEcc-CCCCCCCCCCCCEEEEe--cCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEe
Q psy12426        385 AVNKIGESLPLVCQSPITAK-DPFGRPDRPGQPTVTDW--GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACI  460 (616)
Q Consensus       385 a~n~~g~~~~~~~s~~~~~~-~~~~~p~~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~  460 (616)
                      |.|..|.+..    ....+. ....+|.+|.++.+...  +.+++.|+|.+|...++ .+.+|+|+|+..++ .|.....
T Consensus        82 A~n~~G~~~s----~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~~-~i~~Y~v~y~~~~~~~~~~~~~  156 (215)
T 1bqu_A           82 AENALGKVTS----DHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV-IILKYNIQYRTKDASTWSQIPP  156 (215)
T ss_dssp             EEETTEEEEC----CCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGGT-SCEEEEEEEEETTCSSCEECCG
T ss_pred             EEecccCccC----CcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCCc-ceEEEEEEEccCCCCCceEecc
Confidence            9999998652    122221 12246788888888765  67899999998876544 69999999998865 7776532


Q ss_pred             --ecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCC
Q psy12426        461 --VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP  510 (616)
Q Consensus       461 --~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p  510 (616)
                        .......++|.+|.|++.|.|+|+|.|..|.|.+|..+..+...+...+|
T Consensus       157 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~~~P  208 (215)
T 1bqu_A          157 EDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRP  208 (215)
T ss_dssp             GGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECCCHH
T ss_pred             ccccCccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccccCC
Confidence              24567899999999999999999999999999988888876666554444

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.84  E-value=1.7e-18  Score=164.26  Aligned_cols=256  Identities=16%  Similarity=0.194  Sum_probs=183.1

Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCcccccEEEEeeccCcccccccCCCceEecccCCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTP  172 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (616)
                      +.+|+...+.|.+.                            |.|.+.+.|++  ++..+.   ....+..  .......
T Consensus        17 ~~~G~~v~l~C~~~----------------------------g~p~~~v~W~~--~~~~~~---~~~~~~~--~~~~~~~   61 (284)
T 2rik_A           17 LALGESGTFKCHVT----------------------------GTAPIKITWAK--DNREIR---PGGNYKM--TLVENTA   61 (284)
T ss_dssp             EETTCCEEEEEEEE----------------------------SSSCCEEEEEE--TTEECC---SSSSEEE--EEETTEE
T ss_pred             ecCCCcEEEEEEEE----------------------------cCCCCEEEEEE--CCEECc---CCCcEEE--EEcCCEE
Confidence            45788999999988                            55667899998  533222   2222221  1223456


Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.+++..|.|.|+|.|.|..|....+   ..+.+   ..+|.+.........+..|+.+.|.|.+.+.|.+.+.|++
T Consensus        62 ~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~---~~l~V---~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~  135 (284)
T 2rik_A           62 TLTVLKVTKGDAGQYTCYASNVAGKDSCS---AQLGV---QEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK  135 (284)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEE---EEEEE---ECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEE
T ss_pred             EEEEecCCcccCEEEEEEEEECCceEEEE---EEEEc---cCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEE
Confidence            89999999999999999999988763211   11222   3456665444556678999999999999999999999999


Q ss_pred             CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEe
Q psy12426        253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWR  332 (616)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~  332 (616)
                      ++..+....++.+........|.|.++...|.|.|+|.|.|..|.......+.+..+|.....+.......+..+.|.|.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~  215 (284)
T 2rik_A          136 DETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECE  215 (284)
T ss_dssp             TTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEE
T ss_pred             CCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEE
Confidence            99998877777776666778999999999999999999999999888888999988876554443345566788999998


Q ss_pred             CCCCCCCCceEEEEEEEE--e-CCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        333 APRDDGGTDILHYVVEKM--D-METGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       333 ~~~~~~~~~i~~y~v~~~--~-~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      .....    ...+.+...  . ................+.|.++...+.+.|+|.|.|..|...
T Consensus       216 ~~g~p----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  275 (284)
T 2rik_A          216 LQGTP----PFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYT  275 (284)
T ss_dssp             CBSSS----CCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEecC----CCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCcee
Confidence            64322    222222221  0 111122222223345788999999999999999999998643

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.83  E-value=1.4e-20  Score=182.97  Aligned_cols=279  Identities=13%  Similarity=0.064  Sum_probs=164.7

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeee----cCCeeeeeeCCeeeeeccceEEEeecC---CCCCceeEeeeccCCcc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGE----PVPHVDWRAGGNPLNLRPIWEKCAQTE---GDTPKGKVLDLIEGNHP   73 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~----P~p~v~W~~~~~~l~~~G~Y~C~a~n~---~~~~~~~v~~~~~~~~p   73 (616)
                      +|.+....+.++.+.+|++|.|.|.+.+.    |.+.|.|+|++..... ..+.......   .....+++..       
T Consensus        13 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~-~i~~~~~~~~~~~~~~~~~r~~~-------   84 (331)
T 3u83_A           13 DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQ-NVAIYNPSMGVSVLAPYRERVEF-------   84 (331)
T ss_dssp             --------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEE-EEEEEETTTEEEECTTCTTTEEE-------
T ss_pred             CCcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCc-eEEEEeccCCCCcCcccCCceEe-------
Confidence            35555667889999999999999998887    5667999996532210 0000000000   0000001110       


Q ss_pred             ceeeccccCCCCCceEecCcccCCeEEEEEE-EEcCCCCCCCCCCCC----cce--------eecCCC---ceee-----
Q psy12426         74 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVL-AVNKGGPGEPSDPTA----PHI--------ARAKKG---KCYH-----  132 (616)
Q Consensus        74 ~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~-a~n~~g~~~~~~~~~----~~~--------~~~~~p---~~~~-----  132 (616)
                           ........+|.|.++...|.|.|+|. +.|..|.........    +..        +....-   ..+.     
T Consensus        85 -----~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~  159 (331)
T 3u83_A           85 -----LRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTS  159 (331)
T ss_dssp             -----SSCSSSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEE
T ss_pred             -----cccCCCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEe
Confidence                 00123456899999999999999998 445455322210000    000        000000   1121     


Q ss_pred             eecCcccccEEEEeeccCcccccccCCCceEecccCCC----CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEE
Q psy12426        133 LVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD----TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI  208 (616)
Q Consensus       133 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~  208 (616)
                      ..|.|.+.+.|++  +.       ..............    ...|.|..+..+|.|.|+|.|.|..|....+     +.
T Consensus       160 ~~~~p~~~i~W~~--~~-------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~-----~~  225 (331)
T 3u83_A          160 ANGKPPSVVSWET--RL-------KGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKES-----LT  225 (331)
T ss_dssp             EEEBSCCEEEEEE--SS-------CCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEE-----EE
T ss_pred             cCCcCCceEEEEc--CC-------CCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceee-----EE
Confidence            1277888999988  31       10000010011111    1247788889999999999999987753311     22


Q ss_pred             eccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCce-eEEEECCeeecccCcEEEEecCCceEEEec-CCCCCCcEE
Q psy12426        209 ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKDRFKIVNDDKSTKLKVF-DSKRGDSGI  286 (616)
Q Consensus       209 ~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~-~l~~~~~g~  286 (616)
                      +. ...+|.+.........+..|+.+.|.|.+.+.|.+. +.|++++..+....  .. ..   ..|.|. ++...|.|.
T Consensus       226 l~-V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~--~~-~~---~~L~i~~~v~~~d~G~  298 (331)
T 3u83_A          226 LN-VQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV--EA-QN---RTLFFKGPINYSLAGT  298 (331)
T ss_dssp             CC-EEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE--EE-ET---TEEEECSCCCGGGCEE
T ss_pred             EE-EecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc--ee-cC---cEEEEeCCCccccCeE
Confidence            11 123455544444556678899999999999999998 99999998775432  22 22   289999 899999999


Q ss_pred             EEEEEEcCCCCceeeEEEEEecCCCCC
Q psy12426        287 YTLAVKNSWGTDKGTAKVTVLDIPSPP  313 (616)
Q Consensus       287 y~c~a~n~~g~~~~~~~l~v~~~p~~p  313 (616)
                      |+|.|.|..|.....+.|.|...+...
T Consensus       299 Y~C~a~N~~G~~~~~~~l~V~~~~~~~  325 (331)
T 3u83_A          299 YICEATNPIGTRSGQVEVNITEAAALE  325 (331)
T ss_dssp             EEEEEEETTEEEEEEEEECCBC-----
T ss_pred             EEEEEEeccccceEEEEEEEeccchhh
Confidence            999999999999888888887765543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.83  E-value=3.3e-20  Score=176.86  Aligned_cols=259  Identities=10%  Similarity=0.032  Sum_probs=162.9

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|... +.++.|.+|+.+.|.|.+.|.    |+|++++....     .-..                           
T Consensus         4 ~P~i~~~-~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~-----~~~~---------------------------   46 (292)
T 4dkd_C            4 IPVIEPS-VPELVVKPGATVTLRCVGNGS----VEWDGPPSPHW-----TLYS---------------------------   46 (292)
T ss_dssp             CCEEESC-CSSCEECTTCCEEEEEECSSC----CCBCCCCCSSC-----EECC---------------------------
T ss_pred             CceecCC-CCeEEEcCCCcEEEEEcCCCc----eEEccCCCCce-----EEec---------------------------
Confidence            6888755 788899999999999999884    99997764211     0000                           


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceee-----cCCCceee------------eecCcc--ccc
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR-----AKKGKCYH------------LVGTLL--KDS  141 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~-----~~~p~~~~------------~~g~p~--~~~  141 (616)
                       ......|.|.++...|.|.|+|.|.|..|.....  ..+....     ...+..+.            ..+ +.  +.+
T Consensus        47 -~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~--~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v  122 (292)
T 4dkd_C           47 -DGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA--IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGV  122 (292)
T ss_dssp             -BTTEEEEEESSCCGGGCSCEEECCCC----CCEE--ECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSE
T ss_pred             -cCceEEEEEcccccccCEEEEEEEccCCCCcceE--EEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeE
Confidence             1123589999999999999999999987765333  1111110     01111111            114 43  679


Q ss_pred             EEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccc-cCCCceec
Q psy12426        142 IYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINR  220 (616)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~-~~~P~~~~  220 (616)
                      .|++  +++...   .......    ......|.|.++...|.|.|+|.|.|..|.....  ...+.+... ..+|.+. 
T Consensus       123 ~W~~--~~~~~~---~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~--~~~l~V~~~~~~~p~i~-  190 (292)
T 4dkd_C          123 SLVR--VRGRPL---MRHTNYS----FSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSI--SIRLKVQKVIPGPPALT-  190 (292)
T ss_dssp             EEEE--GGGCCC---CSSCCEE----CCSSSCCEETTCCGGGCSEEEEEECSTTSCEECC--CEEEEEECCCCSSCEEE-
T ss_pred             EEEe--cCCCcc---ccCCccc----ccCCceEEECCCCHHHCeEEEEEEEeCCCceeEE--EEEEEEeCCCCCCCeEE-
Confidence            9998  533211   1111111    1122349999999999999999999876643211  222333322 2367664 


Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecC-ceeEEEECCeeecccCcEEEEec--CCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPI-PTKEWLCNDITIISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      ..+....+..|+.+.|.|.+.+.|. +.+.|++++..+...........  .....|.|.++...|.|.|+|.|.|..|.
T Consensus       191 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  270 (292)
T 4dkd_C          191 LVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGK  270 (292)
T ss_dssp             EESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCE
T ss_pred             ccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCC
Confidence            3344556679999999999998765 46888888876543332222211  12248999999999999999999999999


Q ss_pred             ceeeEEEEEecCCCC
Q psy12426        298 DKGTAKVTVLDIPSP  312 (616)
Q Consensus       298 ~~~~~~l~v~~~p~~  312 (616)
                      ...++.|.|......
T Consensus       271 ~~~~~~l~V~~~~~~  285 (292)
T 4dkd_C          271 HSTSMFFRVVESAGN  285 (292)
T ss_dssp             EEEEEEECC------
T ss_pred             ceeEEEEEEeeCCCc
Confidence            888888888765543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.83  E-value=1.6e-19  Score=162.91  Aligned_cols=134  Identities=19%  Similarity=0.267  Sum_probs=94.7

Q ss_pred             eEEeecccC-CCeEEEEEEEEeCCCCCCCCCCCCCEEeccc----cCCCceeccCCcceEEEcCCeEEEEEEEeeecCce
Q psy12426        173 KGKVLDLIE-GNQYEFRVLAVNKGGPGEPSDPTAPHIARAK----KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT  247 (616)
Q Consensus       173 ~l~i~~l~~-~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~----~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~  247 (616)
                      .|.|.++.. .|.|.|+|.|.|..|......  ..+.+...    ...|.+. ..+....+..|+.+.|.|.+.+.|.+.
T Consensus        65 ~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~--~~l~V~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~g~p~p~  141 (212)
T 2yd1_A           65 ILRIEPVRAGRDDAPYECVAENGVGDAVSAD--ATLTIYEGDKTPAGFPVIT-QGPGTRVIEVGHTVLMTCKAIGNPTPN  141 (212)
T ss_dssp             EEEESSCCTTTTCSEEEEEEECSSSCEEEEE--EEEEEECTTCSCTTCCEEE-ECCCCEEEETTCCEEECCEEECSSCCE
T ss_pred             EEEEEecCCCCcCceEEEEEEeCCCCeEEee--EEEEEecccCCCCCCCeeE-eCCCceEeecCCeEEEEEEeccCCCCe
Confidence            677778887 788888888887766521111  11222211    1125553 344667888999999999999999999


Q ss_pred             eEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee-EEEEEecCCCCC
Q psy12426        248 KEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTVLDIPSPP  313 (616)
Q Consensus       248 ~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~-~~l~v~~~p~~p  313 (616)
                      +.|++++..+... .++.+. .+   .|.|.++...|.|.|+|.|.|..|..... +.|.|...+..+
T Consensus       142 i~W~~~~~~~~~~~~~~~~~-~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~~~  205 (212)
T 2yd1_A          142 IYWIKNQTKVDMSNPRYSLK-DG---FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGT  205 (212)
T ss_dssp             EEEEETTEECCTTSTTEEEE-TT---EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---C-
T ss_pred             EEEEECCeEcccCCCeEEcc-CC---eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccccc
Confidence            9999999988653 444333 33   89999999999999999999999987654 788887765443

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.82  E-value=3.9e-19  Score=160.38  Aligned_cols=134  Identities=19%  Similarity=0.193  Sum_probs=90.3

Q ss_pred             eEEeecc-cCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccc----cCCCceeccCCcceEEEcCCeEEEEEEEeeecCce
Q psy12426        173 KGKVLDL-IEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK----KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT  247 (616)
Q Consensus       173 ~l~i~~l-~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~----~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~  247 (616)
                      .|.|.++ ...|.|.|+|.|.|..|....+   ..+.+...    ...|.+. ..+....+..|+.+.|.|.+.+.|.+.
T Consensus        64 ~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~---~~l~V~~~~~~~~~~p~~~-~~~~~~~~~~g~~v~l~C~~~g~p~p~  139 (212)
T 2yd6_A           64 VLRIQPLRTPRDEAIYECVASNNVGEISVS---TRLTVLREDQIPRGFPTID-MGPQLKVVERTRTATMLCAASGNPDPE  139 (212)
T ss_dssp             EEEECSCCTTTTCEEEEEEEEETTEEEEEE---EEEEEECGGGCCTTCCEEE-ECCCCEEEETTSCEEEEEEEECSSCCE
T ss_pred             EEEEeccCCCCCCeEEEEEEEcCCCcEEEE---EEEEEeccCccCCCcceee-cCCcceeEecCCCEEEEEEecCCCCCe
Confidence            4566666 3666666666666665542111   11222111    1224442 334567788999999999999999999


Q ss_pred             eEEEECCeeeccc---CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEEecCC
Q psy12426        248 KEWLCNDITIISK---DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIP  310 (616)
Q Consensus       248 ~~W~~~~~~~~~~---~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v~~~p  310 (616)
                      +.|++++..+...   .++.....+....|.|.++...|.|.|+|.|.|..|.. ...+.+.+...+
T Consensus       140 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          140 ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             EEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecc
Confidence            9999999987653   45555555566799999999999999999999999976 445666665443

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.82  E-value=4.8e-19  Score=157.89  Aligned_cols=187  Identities=21%  Similarity=0.406  Sum_probs=134.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|.. .+.++.+.+|+.+.|.|.+.|.|.|.|.|+|++..+.....|....                           
T Consensus         7 ~P~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~---------------------------   58 (197)
T 3lcy_A            7 APGIRK-EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS---------------------------   58 (197)
T ss_dssp             EEEEEE-CCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEE---------------------------
T ss_pred             CCcccc-cCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEe---------------------------
Confidence            466764 4889999999999999999999999999999998776444433221                           


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCcccccEEEEeeccCcccccccCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPI  160 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~  160 (616)
                       ......|.|.++...|.|.|.|.|.|..|                                                  
T Consensus        59 -~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~--------------------------------------------------   87 (197)
T 3lcy_A           59 -DGRTHTLTVMTEEQEDEGVYTCIATNEVG--------------------------------------------------   87 (197)
T ss_dssp             -SSSEEEEEEECCSGGGCEEEEEEEECSSC--------------------------------------------------
T ss_pred             -CCCEEEEEEecCCccCCEEEEEEEECCCC--------------------------------------------------
Confidence             01122566666666666666666654332                                                  


Q ss_pred             ceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCcee--ccCCcceEEEcCCeEEEEE
Q psy12426        161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYIN--RDQLSDIKVRAGSNFEFDI  238 (616)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~--~~~~~~~~v~~g~~~~l~c  238 (616)
                                                          .....   ..+.+.   .+|.+.  ........+..|+.+.|.|
T Consensus        88 ------------------------------------~~~~~---~~l~v~---~~p~~~~~~~~~~~~~~~~g~~~~l~C  125 (197)
T 3lcy_A           88 ------------------------------------EVETS---SKLLLQ---ATPQFHPGYPLKEKYYGAVGSTLRLHV  125 (197)
T ss_dssp             ------------------------------------EEEEE---EEEEEE---EEEEECTTSCCCSEEEEETTSCEEEEE
T ss_pred             ------------------------------------ceeEE---EEEEEE---cCCCCCCCccCCcceeecCCCeEEEEE
Confidence                                                21100   000000   001110  1112446678999999999


Q ss_pred             EEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCC-CCcEEEEEEEEcCCCCceeeEEEEEec
Q psy12426        239 NVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR-GDSGIYTLAVKNSWGTDKGTAKVTVLD  308 (616)
Q Consensus       239 ~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~-~~~g~y~c~a~n~~g~~~~~~~l~v~~  308 (616)
                      .+.+.|.+.+.|++++..+....++.+...+....|.|.++.. .|.|.|+|.|.|..|.....+.+.+.+
T Consensus       126 ~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          126 MYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             EEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             EEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            9999999999999999999888888887777778999999995 799999999999999988888887764

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.82  E-value=7.2e-19  Score=154.87  Aligned_cols=172  Identities=23%  Similarity=0.318  Sum_probs=130.4

Q ss_pred             ecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc-cccccceEEeccccCCCeEEEEEEE
Q psy12426        307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       307 ~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      ...|.+|.+ +.+.....+++.|+|.++.    ..+.+|.|+++..++ .+... .......+.+.+|.+++.|.|+|.|
T Consensus         4 ~t~p~~P~~-l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   77 (186)
T 1qr4_A            4 GTDLDNPKD-LEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSG-KKNEMEIPVDSTSFILRGLDAGTEYTISLVA   77 (186)
T ss_dssp             ----CCCEE-EEEESCCSSEEEEEEECCS----SCCSEEEEEEECTTC-CEEEEEECTTCSEEEEESCCSSCEEEEEEEE
T ss_pred             cCCCcCCCc-eEEEecCCCEEEEEEeCCC----CCccEEEEEEEeCCC-CeeEEECCCCCCEEEECCCCCCCEEEEEEEE
Confidence            456777776 7778888999999999763    267899999985433 33222 2345678999999999999999999


Q ss_pred             EecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCc
Q psy12426        386 VNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANI  465 (616)
Q Consensus       386 ~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~  465 (616)
                      .|..|.+.+    ..+.+.   ..|.+|.++.+...+.+++.|+|.+|.    +.+.+|.|+|+..++.........+..
T Consensus        78 ~~~~~~s~~----~~~~~~---t~p~~P~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~~~~~  146 (186)
T 1qr4_A           78 EKGRHKSKP----TTIKGS---TVVGSPKGISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSK  146 (186)
T ss_dssp             ESSSCBCCC----EEEEEE---CCCCCCSCEEEESCCSSCEEEEECCCS----SCCSEEEEEEEETTCCCCEEEEEETTC
T ss_pred             EcCCccCCC----EEEEEE---CCCCCCCccEEEEeCCCEEEEEEECCC----CcccEEEEEEEeCCCCCceEEEcCCCc
Confidence            997665543    223333   347888899999999999999999764    258999999988765323334455678


Q ss_pred             cEEEcCCCCCCCeEEEEEEEEcCCCCCCCC
Q psy12426        466 TATSVPDLKEGEEYEFRVIAVNKGGPGEPS  495 (616)
Q Consensus       466 ~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s  495 (616)
                      ..++|.+|.|++.|.|+|+|.|..|.|++.
T Consensus       147 ~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  176 (186)
T 1qr4_A          147 TRTKLVKLVPGVDYNVNIISVKGFEESEPI  176 (186)
T ss_dssp             CEEEECSCCSSCEEEEEEEEEETTEECCCE
T ss_pred             CEEEEcCCCCCCEEEEEEEEEcCCCcCcCE
Confidence            899999999999999999999999987643

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.81  E-value=3e-19  Score=177.33  Aligned_cols=297  Identities=13%  Similarity=0.034  Sum_probs=188.3

Q ss_pred             eeeccccCC---------CCCceEecCccc-CCeEEEEEEEEcCCCCCCCCCCCCcceeec----CCCce--------ee
Q psy12426         75 WEKCAQTEG---------DTPKGKVLDLIE-GNQYEFRVLAVNKGGPGEPSDPTAPHIARA----KKGKC--------YH  132 (616)
Q Consensus        75 w~~~~~~~~---------~~~~l~i~~l~~-~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~----~~p~~--------~~  132 (616)
                      |.+++....         ....|.|.++.. .|+|.|+|.|.|..|...............    ..+..        +.
T Consensus        41 W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~  120 (382)
T 1cs6_A           41 WKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVM  120 (382)
T ss_dssp             EEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEE
T ss_pred             EEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEE
Confidence            888776532         135688888886 999999999999888543211000000000    00111        11


Q ss_pred             e-----ecCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCC--CCC
Q psy12426        133 L-----VGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD--PTA  205 (616)
Q Consensus       133 ~-----~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~--~~~  205 (616)
                      +     .+.|...+.|++  ++.... .......    ........|.|.+++.+|.|.|+|.|.|..|......  ...
T Consensus       121 l~C~~~~~~p~~~i~W~~--~~~~~~-~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~  193 (382)
T 1cs6_A          121 FTCSPPPHYPALSYRWLL--NEFPNF-IPADGRR----FVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFS  193 (382)
T ss_dssp             ECCCCCSEESCCEEEEEE--SSTTCB-CCCCSSE----EECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCE
T ss_pred             EEeCCCCCCCCcEEEEEE--CCCccc-cccCceE----EEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccce
Confidence            1     145677899998  532211 0011111    1123345899999999999999999999875422110  011


Q ss_pred             CEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCC
Q psy12426        206 PHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG  282 (616)
Q Consensus       206 ~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~  282 (616)
                      .+.+..   ...+|.+....+....+..|+.+.|.|.+.+.|.+.+.|++++..+..      ........|.|.++...
T Consensus       194 ~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~------~~~~~~~~L~i~~~~~~  267 (382)
T 1cs6_A          194 QLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS------KWLSSEPLLHIQNVDFE  267 (382)
T ss_dssp             EEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC------CCSBSSSEEEECSCCGG
T ss_pred             eeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc------EEecCCcEEEEccCChh
Confidence            122111   122465555556678899999999999999999999999998876542      11223458999999999


Q ss_pred             CcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC----CCEE
Q psy12426        283 DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET----GRWV  358 (616)
Q Consensus       283 ~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~----~~~~  358 (616)
                      |.|.|+|.|.|..|.......+.+..+|.....+.......+..+.|.|......    ...  +.|...+.    ....
T Consensus       268 d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p----~p~--v~W~~~g~~~~~~~~~  341 (382)
T 1cs6_A          268 DEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKP----RPA--VRWLRDGQPLASQNRI  341 (382)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEES----CCE--EEEEETTEECCCCSSE
T ss_pred             hCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeec----CCE--EEEEECCEECCCCceE
Confidence            9999999999999988888888887766533322233445677889998753221    112  22322111    0000


Q ss_pred             EccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        359 PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       359 ~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      .   .....+.|.++...+.+.|+|.|.|..|...
T Consensus       342 ~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  373 (382)
T 1cs6_A          342 E---VSGGELRFSKLVLEDSGMYQCVAENKHGTVY  373 (382)
T ss_dssp             E---EETTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             E---EECCEEEECcCCcccCEEEEEEEEeCCCeEE
Confidence            0   1234789999999999999999999998753

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.81  E-value=1.1e-18  Score=155.18  Aligned_cols=121  Identities=17%  Similarity=0.230  Sum_probs=90.5

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCc-eeEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWL  251 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~  251 (616)
                      .|.|.+++..|.|.|+|.|.|..|......  ..+.+   ..+|.+. ..+....+..|+.+.|.|.+.+.|.+ .+.|+
T Consensus        69 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~--~~l~V---~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~  142 (195)
T 2c5d_C           69 QLRITSLQLSDTGQYQCLVFLGHQTFVSQP--GYVGL---EGLPYFL-EEPEDRTVAANTPFNLSCQAQGPPEPVDLLWL  142 (195)
T ss_dssp             EEEESSCCSTTCEEEEEEEEETTEEEECCC--EEEEE---CCSCEEE-ECCCCEEECTTCCEEEEEEEECSSCCCEEEEE
T ss_pred             EEEEEeccccCCcEEEEEEEeCCCceeccc--EEEEE---ecCCeEE-cCCCcEEEcCCCEEEEEeECCCCCCCCEEEEE
Confidence            677888888888888888888765422111  11222   2446553 34556788999999999999999999 99999


Q ss_pred             ECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce-eeEEEEE
Q psy12426        252 CNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTV  306 (616)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~-~~~~l~v  306 (616)
                      +++..+......     .....|.|.+++  |+|.|+|.|.|..|... ..+.|.|
T Consensus       143 ~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          143 QDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             ESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            999887654432     344589999998  78999999999999874 6777777

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.80  E-value=1.5e-18  Score=154.91  Aligned_cols=172  Identities=25%  Similarity=0.389  Sum_probs=131.8

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEE--ccccccceEEeccccCCCeEEEEEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP--MGDVSGTYTRAENLIEGHDYNFRVKAV  386 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~--~~~~~~~~~~i~~L~~~~~y~~~v~a~  386 (616)
                      .| +|.+ +.+.....+++.|+|.++.   +..+.+|.|+++..+...+..  ........+.+.+|.+++.|.|+|.|.
T Consensus        23 ~P-~P~~-l~~~~~~~~sv~lsW~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   97 (203)
T 2gee_A           23 VP-QPTD-LSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTV   97 (203)
T ss_dssp             CC-CCEE-EEEECCTTTCEEEEEECCS---SSSCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             Cc-CCCc-cEEEecCCCEEEEEecCCC---CCCccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEEEEEEE
Confidence            44 4544 6777788999999999765   247899999998765443221  122456789999999999999999999


Q ss_pred             ecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCc
Q psy12426        387 NKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANI  465 (616)
Q Consensus       387 n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~  465 (616)
                      |..|.+.+.      .+.+...+| +|.++.+...+.+++.|+|.+|.  + +.+.+|.|+|+..++ ............
T Consensus        98 ~~~g~s~~~------~~~t~~~~p-~P~~l~~~~~~~~sv~l~W~~p~--~-~~i~~Y~v~~~~~~~~~~~~~~~~~~~~  167 (203)
T 2gee_A           98 KNGGESTPT------TLTQQTAVP-PPTDLRFTNIGPDTMRVTWAPPP--S-IDLTNFLVRYSPVKNEEDVAELSISPSD  167 (203)
T ss_dssp             SSSCBCCCE------EEEEECCCC-CCEEEEEEEEETTEEEEEEECCS--S-CCCSEEEEEEEETTCGGGCEEEEECTTC
T ss_pred             eCCCccccE------eeeecCCCc-CCCceEEEEcCCCEEEEEEcCCC--C-CCccEEEEEEEECCCCCccEEEEcCCCc
Confidence            988876543      222222344 78899999999999999999874  2 369999999998654 222334556778


Q ss_pred             cEEEcCCCCCCCeEEEEEEEEcCCCCCCCC
Q psy12426        466 TATSVPDLKEGEEYEFRVIAVNKGGPGEPS  495 (616)
Q Consensus       466 ~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s  495 (616)
                      ..++|.+|.|++.|.|+|+|.|..|.|+++
T Consensus       168 ~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~  197 (203)
T 2gee_A          168 NAVVLTNLLPGTEYVVSVSSVYEQHESTPL  197 (203)
T ss_dssp             CEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred             CEEEECCCCCCCEEEEEEEEecCCCcCCCe
Confidence            999999999999999999999999998764

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.80  E-value=2.6e-18  Score=152.05  Aligned_cols=85  Identities=24%  Similarity=0.328  Sum_probs=72.1

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEE--CCeeec---ccCcEEEEecCCceEEEecCCC-CCCcEEEEEEEEcCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLC--NDITII---SKDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSWG  296 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~--~~~~~~---~~~~~~~~~~~~~~~l~i~~l~-~~~~g~y~c~a~n~~g  296 (616)
                      +....+..|+.+.|.|.+.+.|.+.+.|++  ++..+.   ...++.+...+....|.|.++. ..|.|.|+|.|.|..|
T Consensus        99 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g  178 (190)
T 2wv3_A           99 KRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIG  178 (190)
T ss_dssp             CSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSC
T ss_pred             CCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCC
Confidence            345678899999999999999999999999  777654   4567777776667799999999 7999999999999999


Q ss_pred             CceeeEEEEEe
Q psy12426        297 TDKGTAKVTVL  307 (616)
Q Consensus       297 ~~~~~~~l~v~  307 (616)
                      ....++.|.|.
T Consensus       179 ~~~~~~~l~V~  189 (190)
T 2wv3_A          179 SASVSTVLRVR  189 (190)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cceeEEEEEEE
Confidence            88888777764

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.80  E-value=3e-19  Score=158.47  Aligned_cols=85  Identities=22%  Similarity=0.440  Sum_probs=70.3

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eee
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGT  301 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~  301 (616)
                      +....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+   .|.|.++...|.|.|+|.|.|..|.. ...
T Consensus       107 ~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~  183 (192)
T 2iep_A          107 PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKL  183 (192)
T ss_dssp             CCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTS---CEEESSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             CcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCC---cEEEecCChhhCEEEEEEEEcCCCcEEEEE
Confidence            34577889999999999999999999999999988777766654443   79999999999999999999998877 456


Q ss_pred             EEEEEecCC
Q psy12426        302 AKVTVLDIP  310 (616)
Q Consensus       302 ~~l~v~~~p  310 (616)
                      +.|.|..+|
T Consensus       184 ~~l~V~~pp  192 (192)
T 2iep_A          184 VKLEVEVFA  192 (192)
T ss_dssp             EEEEEEC--
T ss_pred             EEEEEEeCC
Confidence            777776543

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.80  E-value=5e-19  Score=157.97  Aligned_cols=175  Identities=18%  Similarity=0.287  Sum_probs=128.4

Q ss_pred             CCCCccceeec--CCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCEEEcc-ccccceEEeccccCCCeEEEEEEEEec
Q psy12426        313 PEGPLKPSNIT--KSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMG-DVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       313 p~~~~~~~~~~--~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      |.+ +.+..+.  .+++.|+|.+|   .+..+.+|.|+++.... ..|.... ......+.+.+|.+++.|.|+|.|.|.
T Consensus         3 P~~-l~v~~v~~~~~si~l~W~~p---~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~   78 (201)
T 2ha1_A            3 PVE-VFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQ   78 (201)
T ss_dssp             CCE-EECCSCSCCSSCEEEEEECC---SSTTCCEEEEEEEETTCSSCCEEEEECTTCCEEEECSCCTTEEEEEEEEEECT
T ss_pred             cee-EEEEecCCCCCEEEEEEeCC---CCCCceEEEEEEEECCCCCceEEEecCCCccEEEecCCCCCCEEEEEEEEEec
Confidence            444 5566666  88999999987   34589999999987543 4455443 244678999999999999999999999


Q ss_pred             CcCCCCccc-------cCCEEccCCCCCCCCC-----CCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-Cc
Q psy12426        389 IGESLPLVC-------QSPITAKDPFGRPDRP-----GQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PW  455 (616)
Q Consensus       389 ~g~~~~~~~-------s~~~~~~~~~~~p~~p-----~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~  455 (616)
                      .|.+..+..       +......+....|.+|     .++.+..++.+++.|+|.+|.    +.+.+|.|+|+..+. .|
T Consensus        79 ~G~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~  154 (201)
T 2ha1_A           79 YGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSAS----DTVSGFRVEYELSEEGDE  154 (201)
T ss_dssp             TSCEEEEEEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCSC----TTEEEEEEEEEETTTCCC
T ss_pred             ccccCceeEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCCC----CCccEEEEEEEECCCCCc
Confidence            998764210       0000001111112222     466888889999999999873    269999999997643 55


Q ss_pred             eEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCC
Q psy12426        456 EKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS  495 (616)
Q Consensus       456 ~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s  495 (616)
                      .....+.+....++|.+|.|++.|.|+|+|.|..|.|++.
T Consensus       155 ~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~  194 (201)
T 2ha1_A          155 PQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLI  194 (201)
T ss_dssp             CEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEE
T ss_pred             eeEEEcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccE
Confidence            5555667778999999999999999999999999988754

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.80  E-value=1.2e-18  Score=155.61  Aligned_cols=88  Identities=19%  Similarity=0.271  Sum_probs=71.5

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeee-cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      +|.|....  ...+.+|+.+.|.|.+.+. |.|.+.|++++..+..+.++.  ...+...|.|.++...|.|.|+|.|.|
T Consensus       117 ~P~~~~~~--~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N  192 (207)
T 3rbs_A          117 GPHFVEYL--SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD--FKDGICTLLITEFSKKDAGIYEVILKD  192 (207)
T ss_dssp             SSEEEEEE--EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCC--CSSEEEEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCceEecC--CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceE--cCCCEEEEEECCCCcccCEEEEEEEEc
Confidence            56664332  4778999999999999999 999999999999987655542  223345799999999999999999999


Q ss_pred             CCCCceeeEEEEE
Q psy12426        294 SWGTDKGTAKVTV  306 (616)
Q Consensus       294 ~~g~~~~~~~l~v  306 (616)
                      ..|....++.|+.
T Consensus       193 ~~G~~~~~~~L~~  205 (207)
T 3rbs_A          193 DRGKDKSRLKLVD  205 (207)
T ss_dssp             TTEEEEEEEEECC
T ss_pred             CCCEEEEEEEEec
Confidence            9998888777654

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.80  E-value=1.9e-18  Score=169.30  Aligned_cols=266  Identities=13%  Similarity=0.114  Sum_probs=149.7

Q ss_pred             CcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeec-CCeEEEEEeCCCC-C-CCCceEEEEEEEEeCCCCCEEE
Q psy12426        283 DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNIT-KSSCNLEWRAPRD-D-GGTDILHYVVEKMDMETGRWVP  359 (616)
Q Consensus       283 ~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~-~~~~~l~W~~~~~-~-~~~~i~~y~v~~~~~~~~~~~~  359 (616)
                      ..|.+++.+.+..|.......   ...|.+|.+ +.+.... ...+.|+|+++.. + .+..+..|.++++..+...|..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~---~v~~~pP~n-l~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~~w~~   83 (380)
T 3lb6_C            8 VGCLYTFLISTTFGCTSSSDT---EIKVNPPQD-FEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKT   83 (380)
T ss_dssp             --------------------------CCCCCEE-EEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCSSCEE
T ss_pred             hhhhhhheeecccccccCCcc---cccCCcCCc-eEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCCcceE
Confidence            356667777776664422111   124677776 6666555 5889999998765 2 2346899999999877777887


Q ss_pred             ccccccceEEeccccCCCeEEEEEEEEec----CcCCCCccccCCEEccCC-CCCCCCCCCCEEEEecCCeEEEEecCCC
Q psy12426        360 MGDVSGTYTRAENLIEGHDYNFRVKAVNK----IGESLPLVCQSPITAKDP-FGRPDRPGQPTVTDWGKDHVDLEWTPPK  434 (616)
Q Consensus       360 ~~~~~~~~~~i~~L~~~~~y~~~v~a~n~----~g~~~~~~~s~~~~~~~~-~~~p~~p~~~~~~~~~~~~v~l~W~~p~  434 (616)
                      .......  ....+..+..|+|+|+|.|.    .|.|.++.++..+..... ..+|.+|.++.+...+.+.+.++|+++.
T Consensus        84 ~~~~~~~--~~~~~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~l~csW~p~~  161 (380)
T 3lb6_C           84 IITKNLH--YKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGI  161 (380)
T ss_dssp             EEESSSE--EEEECCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTEEEEEEECC-
T ss_pred             EEeccEE--EEEeecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECCCcEEEEEEcCCC
Confidence            6554332  23344558899999999976    677776655655554444 3556788899998889999999999754


Q ss_pred             CCCCCcceeEEEEEeeCCC-CceEe---EeecCCccEEEcC--CCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcC
Q psy12426        435 KDGGSPISQYIIEKKPKYG-PWEKA---CIVPANITATSVP--DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFV  508 (616)
Q Consensus       435 ~~~~~~i~~Y~i~~~~~~~-~~~~~---~~~~~~~~~~~l~--~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~  508 (616)
                      . . .....|.|+|+..+. .+...   ....+....+.+.  ++.+.+.|.|+|.|.|..|.+..+.    ......  
T Consensus       162 ~-~-~~~~~Y~l~y~~~~~~~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~s~~----~~~~~~--  233 (380)
T 3lb6_C          162 G-V-LLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSSY----FTFQLQ--  233 (380)
T ss_dssp             -------CCEEEEEECTTCSSCEECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CCCEE----EEECGG--
T ss_pred             C-C-CCCccEEEEEEECCCCccccCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeecccc----EEEcHH--
Confidence            3 2 246789999987654 33333   1122334456665  5688899999999999988765321    111110  


Q ss_pred             CCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCce
Q psy12426        509 APVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAI  588 (616)
Q Consensus       509 ~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i  588 (616)
                                                                  ....|+||.++++...+.+++.|+|++|.....+.+
T Consensus       234 --------------------------------------------~~v~p~pP~~l~v~~~~~~~l~l~W~~P~~~~~~~~  269 (380)
T 3lb6_C          234 --------------------------------------------NIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARC  269 (380)
T ss_dssp             --------------------------------------------GSCCCCCCEEEEEC-------CEEEECCSSSCCSTT
T ss_pred             --------------------------------------------HcccCCCCceEEEEEcCCCeEEEEECCCCCCCCcce
Confidence                                                        013478888888877778899999999865434678


Q ss_pred             eeeEEEEeecCCCCeEEcc
Q psy12426        589 KGYEVERRERTSGRWIKIT  607 (616)
Q Consensus       589 ~~Y~i~~~~~~~~~w~~~~  607 (616)
                      .+|+|+|++. +..|....
T Consensus       270 l~Yev~y~~~-~~~w~~~~  287 (380)
T 3lb6_C          270 FDYEIEIRED-DTTLVTAT  287 (380)
T ss_dssp             EEEEECC---------CCE
T ss_pred             EEEEEEEEeC-CCCceEec
Confidence            9999999974 56787543

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.80  E-value=1.6e-18  Score=172.94  Aligned_cols=265  Identities=14%  Similarity=0.048  Sum_probs=144.0

Q ss_pred             ceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE----ecCCCCCCCCccceeecCCeEEEEEeCCCCCCC------C
Q psy12426        271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV----LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGG------T  340 (616)
Q Consensus       271 ~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v----~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~------~  340 (616)
                      ...++..++.+...|.+++.|.| .+.+..+....+    .....+|.  +.+.. ..+++.|+|. |...++      .
T Consensus        64 ~~~~t~~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~~~~~~~~~~~pP~--v~~~~-~~~si~v~w~-P~~~~g~~~~~~~  138 (414)
T 3se4_A           64 KCNFSSLKLNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE--VHLEA-EDKAIVIHIS-PGTKDSVMWALDG  138 (414)
T ss_dssp             CEECCSSCCCTTSCEEEEEEEEE-TTEEEEEECCCBCHHHHCCCCCCE--EEEEE-CSSCEEEEEE-CSSSSCTTTGGGG
T ss_pred             EEECCcccccCCCcEEEEEEEee-CCcCCCEecCceeecccceeCCCe--EEEEE-cCCEEEEEEE-cCCCCCceeeeec
Confidence            34566667889999999999999 443322211111    12233443  44443 4568999999 653322      3


Q ss_pred             ceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEec--CcCCCCccccCCEEccCCCC-CCCCCCCCE
Q psy12426        341 DILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK--IGESLPLVCQSPITAKDPFG-RPDRPGQPT  417 (616)
Q Consensus       341 ~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~--~g~~~~~~~s~~~~~~~~~~-~p~~p~~~~  417 (616)
                      .+..|.|.|+..+....... ......+.|.+|.+++.|.|+|+|.|.  .|.|..+   ....+.+... ++.+|.++.
T Consensus       139 ~~~~Y~v~y~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S---~~~~~~t~~~~~~~~P~~v~  214 (414)
T 3se4_A          139 LSFTYSLVIWKNSSGVEERI-ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYS---PVHCIKTTVENELPPPENIE  214 (414)
T ss_dssp             SSCEEEEEEEETTTCCEEEE-EEECSEEEECCCCTTCEEEEEEEEECTTTCCEEEEC---CCEEEECCSCCSSCCCEEEE
T ss_pred             CcEEEEEEEEECCCCceEEE-ecCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccC---cccccccccccccCCCCccE
Confidence            57899999987665553332 234567999999999999999999994  5666554   3334444333 445677888


Q ss_pred             EEEecCCeEEEEecCCCCCCCCcceeEEEEEeeC--------CC-CceEeEee-cCCccEEEcC-CCCCCCeEEEEEEEE
Q psy12426        418 VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK--------YG-PWEKACIV-PANITATSVP-DLKEGEEYEFRVIAV  486 (616)
Q Consensus       418 ~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~--------~~-~~~~~~~~-~~~~~~~~l~-~L~p~t~Y~~~v~a~  486 (616)
                      +...+ .++.|.|.+|..     ..+|.|+|+..        +. .|...... ......+.|+ +|.+++.|.|||+|.
T Consensus       215 ~~~~~-~~~~l~W~pp~~-----~~~Y~v~y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~~rV~A~  288 (414)
T 3se4_A          215 VSVQN-QNYVLKWDYTYA-----NMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQAS  288 (414)
T ss_dssp             EEEET-TEEEEEEECSSS-----SCEEEEEEEESGGGSCCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEEEEEEEE
T ss_pred             EEEec-CCeEEEECCCCC-----CeEEEEEEEehhccccccccccCceECCCccCCCCCEEcCCcccccCccEEEEEEEe
Confidence            77665 679999997532     34899999863        12 56643211 1234566665 699999999999999


Q ss_pred             cCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEE
Q psy12426        487 NKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEAT  566 (616)
Q Consensus       487 n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~  566 (616)
                      |..|.|++|....+.+..                                                 ..++.+|. +++.
T Consensus       289 n~~g~s~~s~~~~~~t~~-------------------------------------------------~~~~~pP~-l~~~  318 (414)
T 3se4_A          289 DGNNTSFWSEEIKFDTEI-------------------------------------------------QAFLLPPV-FNIR  318 (414)
T ss_dssp             CSSSEEEECCCEEEETTC-------------------------------------------------C------------
T ss_pred             cCCCcccccccccccchh-------------------------------------------------ccccCCCe-EEEE
Confidence            999999888643322111                                                 12456776 7666


Q ss_pred             eecCCcEEEEeeCCCCCC-----CCceeeeEEEEeecCCC
Q psy12426        567 DVDKDHIKIKWQQPISNG-----GSAIKGYEVERRERTSG  601 (616)
Q Consensus       567 ~~~~~~i~l~W~~p~~~~-----~~~i~~Y~i~~~~~~~~  601 (616)
                      . ..++|.|+|.+|....     ++.+.+|.|.|++.+..
T Consensus       319 ~-~~~si~v~W~~P~~~~~~~~~~~~~~~Y~v~y~~~~~~  357 (414)
T 3se4_A          319 S-LSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSN  357 (414)
T ss_dssp             ----------------------------------------
T ss_pred             E-CCCeEEEEEECCCCccccchhhcCCeEEEEEEEECCCC
Confidence            4 4589999999987542     24789999999866543

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.79  E-value=1.3e-18  Score=156.99  Aligned_cols=135  Identities=21%  Similarity=0.235  Sum_probs=95.8

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE-eeecCceeEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTKEWL  251 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~-~~~p~~~~~W~  251 (616)
                      .+.|.++...|.|.|+|.|.|..|......    +.+.....+|.+ ...+....+..|+.+.|.|.+ .+.|.+.+.|+
T Consensus        73 ~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~----~~l~V~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~  147 (212)
T 2v9r_A           73 RIVHGRKSRPDEGVYVCVARNYLGEAVSHD----ASLEVAILRDDF-RQNPSDVMVAVGEPAVMECQPPRGHPEPTISWK  147 (212)
T ss_dssp             SCCCCSSCCCSCEEEEEEEEETTEEEECCC----EEEEECEECSSC-SBCCCCEEEETTSCEEEECBCCCEESCCEEEEE
T ss_pred             EEEecCCCcccCeEEEEEEECCCCceeecc----eEEEEEeccccc-eeCCCceEecCCCcEEEEEecCCCCCCCEEEEE
Confidence            345677889999999999999877532211    222222223333 334566789999999999998 89999999999


Q ss_pred             ECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee-eEEEEEecCCCCCCC
Q psy12426        252 CNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVLDIPSPPEG  315 (616)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~-~~~l~v~~~p~~p~~  315 (616)
                      +++..+...........+   .|.|.++...|.|.|+|.|.|..|.... .+.|.|..+|.....
T Consensus       148 ~~~~~l~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~  209 (212)
T 2v9r_A          148 KDGSPLDDKDERITIRGG---KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKA  209 (212)
T ss_dssp             ETTEEECTTSTTEEEETT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-------
T ss_pred             ECCccCCCCcceEEccCC---eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhh
Confidence            999988754433222333   8999999999999999999999887654 478888887765443

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.79  E-value=4.3e-19  Score=166.25  Aligned_cols=223  Identities=16%  Similarity=0.079  Sum_probs=146.5

Q ss_pred             eEecCCCeEEEEEEEee-ecCC--eeeeeeCCeeeee---------------------cc--ceEEEeecCCCCCceeEe
Q psy12426         12 IKLSAGTTLKFDANIIG-EPVP--HVDWRAGGNPLNL---------------------RP--IWEKCAQTEGDTPKGKVL   65 (616)
Q Consensus        12 ~~v~~g~~v~l~C~~~g-~P~p--~v~W~~~~~~l~~---------------------~G--~Y~C~a~n~~~~~~~~v~   65 (616)
                      ..|.+|+.++|.|.+.| .|.|  .|+|+|+|..+..                     +|  .|+|.|.|..+.....+.
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~   92 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT   92 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEEE
Confidence            47899999999999998 8888  9999999976521                     45  599999998655322111


Q ss_pred             -eeccCCccceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCcccccEEE
Q psy12426         66 -DLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYE  144 (616)
Q Consensus        66 -~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~~~~~~  144 (616)
                       .+.....|..           ...-..+.+|+...+.|.+.                              |.+.+.| 
T Consensus        93 l~V~~~p~p~~-----------~~~~~~v~~G~~v~l~C~~~------------------------------p~~~i~W-  130 (265)
T 2oz4_A           93 VTIYSFPAPNV-----------ILTKPEVSEGTEVTVKCEAH------------------------------PRAKVTL-  130 (265)
T ss_dssp             EEEECCCCCEE-----------EESCSEEETTCEEEEEEECC------------------------------TTSEEEE-
T ss_pred             EEEeCCCCcee-----------ecCCceecCCCcEEEEEEcc------------------------------CCCEEEE-
Confidence             1111000111           01111245688888888864                              2345777 


Q ss_pred             EeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCC-CCCCCCCCCCCEEeccccCCCcee-ccC
Q psy12426        145 QLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG-GPGEPSDPTAPHIARAKKVSPYIN-RDQ  222 (616)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~-g~~~~s~~~~~~~~~~~~~~P~~~-~~~  222 (616)
                      .  . ..+             ...+....|.|..+..+|.|.|+|.|.|.. |..........+.+   ..+|.+. ...
T Consensus       131 ~--g-~~~-------------~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V---~~~p~~~~~~~  191 (265)
T 2oz4_A          131 N--G-VPA-------------QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV---LYGPRLDERDC  191 (265)
T ss_dssp             S--S-CSS-------------SCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEE---EEEEECCGGGS
T ss_pred             C--C-EEc-------------cCCCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEE---EeCCccccccC
Confidence            3  2 111             011223467899999999999999998654 54321111111222   2334443 223


Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      +....+.+|+.+.|.|.+.|.|.+.+.|++++..+...        +   .+  ..+...|.|.|+|.|.|..|.....+
T Consensus       192 p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~--------g---~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~  258 (265)
T 2oz4_A          192 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI--------G---ES--VTVTRDLEGTYLCRARSTQGEVTREV  258 (265)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT--------T---SC--EECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCC--------C---cE--EEeehhhCeEEEEEEECCCCcEEEEE
Confidence            45678999999999999999999999999998732221        1   11  23777999999999999999988888


Q ss_pred             EEEEec
Q psy12426        303 KVTVLD  308 (616)
Q Consensus       303 ~l~v~~  308 (616)
                      .|.|..
T Consensus       259 ~l~V~~  264 (265)
T 2oz4_A          259 TVNVLS  264 (265)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            888764

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.79  E-value=3.7e-19  Score=169.15  Aligned_cols=227  Identities=14%  Similarity=0.152  Sum_probs=139.7

Q ss_pred             CCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc---ccccceEEe--ccccCCCeEEEEEEE
Q psy12426        311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG---DVSGTYTRA--ENLIEGHDYNFRVKA  385 (616)
Q Consensus       311 ~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~---~~~~~~~~i--~~L~~~~~y~~~v~a  385 (616)
                      .+|.+ +.+... ...+.|+|+++... ...+. |.|+++..+...|....   ......+.+  ..|.++..|.|||+|
T Consensus         5 ~~P~n-v~~~~~-n~~~iL~W~pp~~~-~~~v~-Y~V~y~~~~~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV~A   80 (306)
T 3s98_A            5 KSPQK-VEVDII-DDNFILRWNRSDES-VGNVT-FSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRA   80 (306)
T ss_dssp             ---CC-CEEEEE-TTEEEEECC---------CE-EEEEEEESSCSSCEECTTCSSBSSSEEECCC---CTTSCEEEEEEE
T ss_pred             CCCcE-eEEEEE-CCeEEEEEcCCCCC-CCCeE-EEEEEEECCCCCcEECCCccCCCCCEEEccccccCCCCcEEEEEEE
Confidence            35665 666654 55688999987643 34565 99999987777887652   233444555  456899999999999


Q ss_pred             EecCcCCCCccccCCEEccCCC-CCCCCCCCCEEEEecCCeEEEEecCCCCCC-----CCcceeEEEEEeeCCC--CceE
Q psy12426        386 VNKIGESLPLVCQSPITAKDPF-GRPDRPGQPTVTDWGKDHVDLEWTPPKKDG-----GSPISQYIIEKKPKYG--PWEK  457 (616)
Q Consensus       386 ~n~~g~~~~~~~s~~~~~~~~~-~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~-----~~~i~~Y~i~~~~~~~--~~~~  457 (616)
                      .| .|.+.++.   ...+.+.. ..+++|. +.+... .+++.|+|.+|...+     .+.+.+|+|.|++.++  .|..
T Consensus        81 ~n-~~~S~~s~---~~~f~~~~~~~~~pP~-v~~~~~-~~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~~~~~~~~~~  154 (306)
T 3s98_A           81 EK-ENTSSWYE---VDSFTPFRKAQIGPPE-VHLEAE-DKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERI  154 (306)
T ss_dssp             EC-SSCEEEEE---CCCBCHHHHCBCCCCE-EEEEEC-SSCEEEEEECC---CCCC-----CCEEEEEEEETTTCCCEEE
T ss_pred             Ee-CCcCCCEe---eeeEechhhCccCCCe-EEEEEc-CCEEEEEEECCCCCCcceeccCCcEEEEEEEEECCCCCeEEE
Confidence            99 77655432   22221111 2344553 666644 468999999554321     2468999999988776  3432


Q ss_pred             eEeecCCccEEEcCCCCCCCeEEEEEEEEc--CCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeC
Q psy12426        458 ACIVPANITATSVPDLKEGEEYEFRVIAVN--KGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKN  535 (616)
Q Consensus       458 ~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n--~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~  535 (616)
                          ......++|.+|.|++.|.|+|+|.|  ..|.|++|......+...                              
T Consensus       155 ----~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~------------------------------  200 (306)
T 3s98_A          155 ----ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVE------------------------------  200 (306)
T ss_dssp             ----EEECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSC------------------------------
T ss_pred             ----ecccceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCC------------------------------
Confidence                12357899999999999999999999  678999887654433221                              


Q ss_pred             eeeeccccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEe--------ecCCCCeEEc
Q psy12426        536 FVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERR--------ERTSGRWIKI  606 (616)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~--------~~~~~~w~~~  606 (616)
                                         .++.+|.++.+.. ..+++.|+|++|..+     .+|.+.|.        ..++++|.++
T Consensus       201 -------------------~p~~~P~~v~~~~-~~~s~~l~W~~p~~~-----~~~~v~~~~gy~~~~~~~~~~~W~~~  254 (306)
T 3s98_A          201 -------------------NELPPPENIEVSV-QNQNYVLKWDYTYAN-----MTFQVQWLHAFLKRNPGNHLYKWKQI  254 (306)
T ss_dssp             -------------------CSSCCCEEEEEEE-ETTEEEEEEECSSSS-----CEEEEEEEEGGGGSCC----CCCEEC
T ss_pred             -------------------CcCCCCceEEEEE-ecCEEEEEeCCCCCc-----EEEEEEEehhhhhccccccccCceEC
Confidence                               2245677777754 458899999987432     24444443        4557789965

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.79  E-value=3.8e-18  Score=152.84  Aligned_cols=152  Identities=24%  Similarity=0.382  Sum_probs=120.8

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCC--CCceEe-EeecCCccEEEcCCCCCCCeEEEEE
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY--GPWEKA-CIVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~--~~~~~~-~~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      ..+|++|.++.+.. +.+++.|+|.+|. +++.+|.+|.|+|+...  +.|... ...++....+.+ +|.|++.|.|+|
T Consensus         3 ~~~P~~P~~~~~~~-~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~~V   79 (205)
T 1cfb_A            3 QDVPNAPKLTGITC-QADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTFRV   79 (205)
T ss_dssp             CCCCCCCEEEEEEE-CSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEEEE
T ss_pred             ccCCCCCCCcEEEe-cCCEEEEEEECcc-cCCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEEEE
Confidence            36789999999999 9999999999874 55668999999998764  367543 344566778888 999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCC
Q psy12426        484 IAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKP  563 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~  563 (616)
                      +|.|..|.|++|.....+++...                                                .++.+|.++
T Consensus        80 ~A~n~~G~~~~s~~~~~~~T~~~------------------------------------------------~P~~~P~~~  111 (205)
T 1cfb_A           80 IAFNKIGASPPSAHSDSCTTQPD------------------------------------------------VPFKNPDNV  111 (205)
T ss_dssp             EEEETTEECCCCCCCCCEEECCC------------------------------------------------CCSCCCSCC
T ss_pred             EEEECCccCCCCCCceeEEcCCc------------------------------------------------CCCCCCeee
Confidence            99999999998854444443321                                                234678889


Q ss_pred             eEEeecCCcEEEEeeCCC-CCCCCceeeeEEEEeecCCCC-eEEccCC
Q psy12426        564 EATDVDKDHIKIKWQQPI-SNGGSAIKGYEVERRERTSGR-WIKITPD  609 (616)
Q Consensus       564 ~~~~~~~~~i~l~W~~p~-~~~~~~i~~Y~i~~~~~~~~~-w~~~~~~  609 (616)
                      ++...+.++|.|+|++|. .+.||.|.+|+|.|+..+... |..+...
T Consensus       112 ~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~  159 (205)
T 1cfb_A          112 VGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF  159 (205)
T ss_dssp             EEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEEC
T ss_pred             EeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCCCcEEEEec
Confidence            999999999999999976 245899999999999887654 8876543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.79  E-value=8.8e-19  Score=174.90  Aligned_cols=277  Identities=11%  Similarity=-0.022  Sum_probs=157.9

Q ss_pred             ceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcc---eeecCCC--------ceee--eecCcccccEEEEeeccCccc
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPH---IARAKKG--------KCYH--LVGTLLKDSIYEQLKRSGLFD  153 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~---~~~~~~p--------~~~~--~~g~p~~~~~~~~~~~~~~~~  153 (616)
                      +|.|.++.+.|+|.|.|.|.|..|.........+.   .+....|        ..+.  ..|.|.+.+.|++  +++..+
T Consensus       104 sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k--~~~~~~  181 (423)
T 3qs7_E          104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVL--CDSQGE  181 (423)
T ss_dssp             EEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEE--C-----
T ss_pred             EEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCccccccCCcEeccCCceEEEEEEeeecCCeEEEEE--CCCCCc
Confidence            58999999999999999999998865432100000   0000111        1111  2389999999999  533211


Q ss_pred             ccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCe
Q psy12426        154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSN  233 (616)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~  233 (616)
                          .........+.....     -+...|.|.|+|.|.|..|.....    .+.+.. ..+|.+   .+.+..+.+|+.
T Consensus       182 ----~~~~~~~~~~~~~~~-----~l~~~d~G~Y~C~A~N~~G~~~~~----~~~l~V-~~~p~~---~~~~~~v~~G~~  244 (423)
T 3qs7_E          182 ----SCKEESPAVVKKEEK-----VLHELFGTDIRCCARNELGRECTR----LFTIDL-NQTPQT---TLPQLFLKVGEP  244 (423)
T ss_dssp             ------------CEEECCS-----EECCCCSSCEEEEEECSSCEEEEE----CEEEES-SSCCCS---STTEEEEETTSC
T ss_pred             ----cccccccccccccce-----EEecccCeEEEEEEEcCCCCccee----eEEEEE-ecCCcc---CCCceEEeCCCe
Confidence                000000000000111     125789999999999998864321    122222 123332   234678999999


Q ss_pred             EEEEEEEee-ecCceeEEEECCeeecccCcEEEE--ec----CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        234 FEFDINVIG-EPIPTKEWLCNDITIISKDRFKIV--ND----DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       234 ~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~--~~----~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +.|.|.+.+ .|.+.+.|++++..+.....+...  ..    .....|.|.++...|.|.|+|.|.|.   ....+.|.|
T Consensus       245 v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V  321 (423)
T 3qs7_E          245 LWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTI  321 (423)
T ss_dssp             EEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEE
T ss_pred             EEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEE
Confidence            999999999 677999999999877544322111  11    11247999999999999999999987   666777888


Q ss_pred             ecCCCCCCCC--ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc---cccceEEeccccCCCeEEE
Q psy12426        307 LDIPSPPEGP--LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD---VSGTYTRAENLIEGHDYNF  381 (616)
Q Consensus       307 ~~~p~~p~~~--~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~~~i~~L~~~~~y~~  381 (616)
                      ..+|.....+  ..+....+..+.|.|......    ..  .+.|...+.  -.....   .....+....+...+.+.|
T Consensus       322 ~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P----~p--~i~W~k~g~--~l~~~~~~~~~~~~~~~~~~~~~D~G~Y  393 (423)
T 3qs7_E          322 VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYP----QI--RCTWTFSRK--SFPCEQKGLDNGYSISKFCNHKHQPGEY  393 (423)
T ss_dssp             ESSCEEEEC---CEECCCTTCCCCEEEEEEEES----CC--EEEEEETTE--EEECBCCBCSSSSEEEEECCCTTCCSCE
T ss_pred             EeCCcceEcCCCccEEecCCCeEEEEEEEEEcC----CC--eEEEEECCE--ECCCccccccCCcEEEEEecccccCEEE
Confidence            7765422111  122234456777777753221    11  223322211  000000   0112222245556788999


Q ss_pred             EEEEEecCcCCC
Q psy12426        382 RVKAVNKIGESL  393 (616)
Q Consensus       382 ~v~a~n~~g~~~  393 (616)
                      +|.|.|..|...
T Consensus       394 tC~A~N~~G~~~  405 (423)
T 3qs7_E          394 IFHAENDDAQFT  405 (423)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEcCCceEE
Confidence            999999999753

>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*

Probab=99.79  E-value=5e-18  Score=169.47  Aligned_cols=328  Identities=15%  Similarity=0.113  Sum_probs=134.4

Q ss_pred             cccccEEEEeeccCcccccccCCCceEe---cccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEE--ecc
Q psy12426        137 LLKDSIYEQLKRSGLFDQFHLCPIWEKC---AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI--ARA  211 (616)
Q Consensus       137 p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~--~~~  211 (616)
                      ++. |.+++  +    .  .+.+.|...   ..+......++..+|.+...|.+++.|.| .+.+..+.. ..+.  ...
T Consensus        36 ~i~-Y~V~y--~----~--~~~~~W~~~~~c~~~~~~~~~~t~~~l~~~~~Y~~rV~A~n-~~~S~~s~~-~~~~~~~~~  104 (414)
T 3se4_A           36 NVT-FSFDY--Q----K--TGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEK-ENTSSWYEV-DSFTPFRKA  104 (414)
T ss_dssp             -CE-EEEEE--E----E--SSCCCCEEEEEEEEESCSCEECCSSCCCTTSCEEEEEEEEE-TTEEEEEEC-CCBCHHHHC
T ss_pred             CeE-EEEEE--E----E--CCCCCcEECcCccCCCCCEEECCcccccCCCcEEEEEEEee-CCcCCCEec-Cceeecccc
Confidence            444 88888  4    1  244568643   23344444555667899999999999999 444432211 1111  112


Q ss_pred             ccCCCceeccCCcceEEEcCCeEEEEEEEeeec----------C--ceeEEEECCeeecccCcEEEEecCCceEEEecCC
Q psy12426        212 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP----------I--PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS  279 (616)
Q Consensus       212 ~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p----------~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l  279 (616)
                      ...+|.+.      +. .....+.+.+. ...+          .  -.+.|.+++..    ....+.  +....+.|.+|
T Consensus       105 ~~~pP~v~------~~-~~~~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~y~~~~~~----~~~~~~--~~~~~~~i~~L  170 (414)
T 3se4_A          105 QIGPPEVH------LE-AEDKAIVIHIS-PGTKDSVMWALDGLSFTYSLVIWKNSSG----VEERIE--NIYSRHKIYKL  170 (414)
T ss_dssp             CCCCCEEE------EE-ECSSCEEEEEE-CSSSSCTTTGGGGSSCEEEEEEEETTTC----CEEEEE--EECSEEEECCC
T ss_pred             eeCCCeEE------EE-EcCCEEEEEEE-cCCCCCceeeeecCcEEEEEEEEECCCC----ceEEEe--cCCcEEEEcCC
Confidence            23344321      11 22334555554 2111          0  13344444322    111122  22347999999


Q ss_pred             CCCCcEEEEEEEEcC--CCCceeeEEEEEecC---C-CCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeC-
Q psy12426        280 KRGDSGIYTLAVKNS--WGTDKGTAKVTVLDI---P-SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM-  352 (616)
Q Consensus       280 ~~~~~g~y~c~a~n~--~g~~~~~~~l~v~~~---p-~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~-  352 (616)
                      .+...|.+++.|.|.  .|.+..+....+...   | .+|.+ +.+... ...+.|.|.++.     ...+|.|+|+.. 
T Consensus       171 ~p~t~Y~~~V~A~n~~~~g~g~~S~~~~~~t~~~~~~~~P~~-v~~~~~-~~~~~l~W~pp~-----~~~~Y~v~y~~~~  243 (414)
T 3se4_A          171 SPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPEN-IEVSVQ-NQNYVLKWDYTY-----ANMTFQVQWLHAF  243 (414)
T ss_dssp             CTTCEEEEEEEEECTTTCCEEEECCCEEEECCSCCSSCCCEE-EEEEEE-TTEEEEEEECSS-----SSCEEEEEEEESG
T ss_pred             CCCCeEEEEEEEEeccCCCCCccCcccccccccccccCCCCc-cEEEEe-cCCeEEEECCCC-----CCeEEEEEEEehh
Confidence            999999999999994  454444333333222   2 23333 444444 467999999753     235999999863 


Q ss_pred             -------CCCCEEEcc---ccccceEEec-cccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCC-CCCCCCCCEEEE
Q psy12426        353 -------ETGRWVPMG---DVSGTYTRAE-NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFG-RPDRPGQPTVTD  420 (616)
Q Consensus       353 -------~~~~~~~~~---~~~~~~~~i~-~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~-~p~~p~~~~~~~  420 (616)
                             +...|....   ......+.+. +|.+++.|.++|.|.|..|.|.++   ....+.+... ++++|. +.+..
T Consensus       244 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s---~~~~~~t~~~~~~~pP~-l~~~~  319 (414)
T 3se4_A          244 LKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWS---EEIKFDTEIQAFLLPPV-FNIRS  319 (414)
T ss_dssp             GGSCCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEEC---CCEEEETTCC-------------
T ss_pred             ccccccccccCceECCCccCCCCCEEcCCcccccCccEEEEEEEecCCCccccc---ccccccchhccccCCCe-EEEEE
Confidence                   234565432   2334566665 699999999999999999988774   3444444444 456665 77764


Q ss_pred             ecCCeEEEEecCCCCCCC-----CcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC----CCC
Q psy12426        421 WGKDHVDLEWTPPKKDGG-----SPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK----GGP  491 (616)
Q Consensus       421 ~~~~~v~l~W~~p~~~~~-----~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~----~G~  491 (616)
                       ..+++.|.|.+|...++     +.+..|.|.|.+.++.-...  .......++|.+|.|++.|.|+|+|.+.    .|.
T Consensus       320 -~~~si~v~W~~P~~~~~~~~~~~~~~~Y~v~y~~~~~~~~~~--~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~~~g~  396 (414)
T 3se4_A          320 -LSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERK--IIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKS  396 (414)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -CCCeEEEEEECCCCccccchhhcCCeEEEEEEEECCCCceEE--EEecCCeEEeCCCCCCCeEEEEEEEEecccccCCC
Confidence             35799999998875543     24788999887765411111  1234678999999999999999999983    589


Q ss_pred             CCCCCCCCCEEe
Q psy12426        492 GEPSKASAPVTC  503 (616)
Q Consensus       492 g~~s~~~~~~~~  503 (616)
                      |++|....+.|.
T Consensus       397 g~~S~~~~~~T~  408 (414)
T 3se4_A          397 SVFSDAVCEKTK  408 (414)
T ss_dssp             ------------
T ss_pred             CCCCCCEeEEeC
Confidence            999987666553

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}

Probab=99.79  E-value=3.9e-18  Score=151.88  Aligned_cols=149  Identities=34%  Similarity=0.606  Sum_probs=126.0

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .+|++|.++.+...+.+++.|+|.+|..+++.++.+|.|+|+..+. .|.... .......+++.+|.|++.|.|+|+|.
T Consensus         4 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~~~L~p~t~Y~~~V~a~   82 (197)
T 3lpw_A            4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVA-TNCHKTSWKVDQLQEGCSYYFRVLAE   82 (197)
T ss_dssp             CSCCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCSSCEEEE-EEECSSEEEECCCCTTCEEEEEEEEE
T ss_pred             CCCCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCCccEEee-cCCCccEEEEcCCCCCCEEEEEEEEE
Confidence            5788999999999999999999998876777779999999998876 666543 33557899999999999999999999


Q ss_pred             cCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEE
Q psy12426        487 NKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEAT  566 (616)
Q Consensus       487 n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~  566 (616)
                      |..|.|.++......+..                                                  .+|.+|.++.+.
T Consensus        83 ~~~g~~~~s~~~~~~t~~--------------------------------------------------~~p~~p~~~~~~  112 (197)
T 3lpw_A           83 NEYGIGLPAETAESVKAS--------------------------------------------------ERPLPPGKITLM  112 (197)
T ss_dssp             ETTEECCCEECSSCEESC--------------------------------------------------CCCCCCSCEEEE
T ss_pred             cCccccCCCCCccceecC--------------------------------------------------CCCCCCcccEEE
Confidence            999999888766655543                                                  347788888888


Q ss_pred             eecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCCCeEEcc
Q psy12426        567 DVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKIT  607 (616)
Q Consensus       567 ~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~w~~~~  607 (616)
                      ..+.+++.|+|++|..+.++.+.+|.|.|+..++.+|..+.
T Consensus       113 ~~~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~  153 (197)
T 3lpw_A          113 DVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCA  153 (197)
T ss_dssp             EECSSCEEEEECCCSCCTTSCCCEEEEEEEETTCSCCEEEE
T ss_pred             eccCCeEEEEecCCCcCCCCcccEEEEEEEeCCCCceEEee
Confidence            89999999999998766556999999999998888888754

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.79  E-value=1.8e-18  Score=156.80  Aligned_cols=126  Identities=19%  Similarity=0.264  Sum_probs=92.3

Q ss_pred             EeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE-eeecCceeEEEEC
Q psy12426        175 KVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTKEWLCN  253 (616)
Q Consensus       175 ~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~-~~~p~~~~~W~~~  253 (616)
                      .|.+++..|.|.|+|.|.|..|......    +.+.....+|.+ ...+....+..|+.+.|.|.+ .+.|.+.+.|+++
T Consensus        72 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~----~~l~v~~~~~~~-~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~  146 (217)
T 2vr9_A           72 TMQGKKEQDGGEYWCVAKNRVGQAVSRH----ASLQIAVLRDDF-RVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD  146 (217)
T ss_dssp             CCBSSSCBCCEEEEEEEEETTEEEECCC----EEEEECEECCSC-SBCCCCEEECTTSCEEECCBCCCEESCCEEEEEET
T ss_pred             EeccCCcccCceEEEEEecCCCcccccc----ceEEEEEeCCCc-EECCCccEEcCCCeEEEEEECCCCCCCCeEEEEEC
Confidence            5777888899999999998877532211    222222233444 233456788999999999999 8999999999999


Q ss_pred             Ceeecc--------cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy12426        254 DITIIS--------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD  308 (616)
Q Consensus       254 ~~~~~~--------~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~  308 (616)
                      +..+..        ..++.+...+   .|.|.++...|.|.|+|.|.|..|....+..+.+..
T Consensus       147 g~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          147 GVPLDDLKAMSFGASSRVRIVDGG---NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             TEEECCCCCC---CCCSEEEETTT---EEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CcCCCcccccccccCCcEEecCCC---cEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence            998763        2334433333   899999999999999999999999877666555543

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.78  E-value=6.8e-19  Score=173.23  Aligned_cols=221  Identities=10%  Similarity=-0.040  Sum_probs=147.4

Q ss_pred             eEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEec
Q psy12426         12 IKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVL   91 (616)
Q Consensus        12 ~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~   91 (616)
                      ..+.+|+.+.|.|.+.|.|.|.|+|+|+|..+..                                      ....|.|.
T Consensus       106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~--------------------------------------~~~~L~i~  147 (363)
T 1wio_A          106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ--------------------------------------GGKTLSVS  147 (363)
T ss_dssp             SSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE--------------------------------------ESSEEEEC
T ss_pred             eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc--------------------------------------cceEEEEe
Confidence            3578999999999999999999999999876531                                      13578899


Q ss_pred             CcccCCeEEEEEEEEcCCCCCCCCCCCCccee-ecCCCc----------eee--eec-----CcccccEEEEeeccCccc
Q psy12426         92 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA-RAKKGK----------CYH--LVG-----TLLKDSIYEQLKRSGLFD  153 (616)
Q Consensus        92 ~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~-~~~~p~----------~~~--~~g-----~p~~~~~~~~~~~~~~~~  153 (616)
                      ++...|.|.|.|.|.|..+.....  ...... ....|.          .+.  +.|     .|.+.+.|++  ++..+.
T Consensus       148 ~v~~~d~G~Y~C~a~~~~~~~~~~--~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~--~g~~~~  223 (363)
T 1wio_A          148 QLELQDSGTWTCTVLQNQKKVEFK--IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQA--ERASSS  223 (363)
T ss_dssp             SBCGGGCEECEEEEEETTEEEEEC--CEECEECCSCSEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEE--SSCCCC
T ss_pred             eCChhcCCEEEEEEecCCCeEEEE--EEEEEecCCCCCCceEEecCCEEEEEEEEecccccCCCceeEEEec--CCCCcc
Confidence            999999999999999875544332  111110 111111          111  114     6788999998  533322


Q ss_pred             ccc-----cCCCceEecc--------cCCCCCeEEeecccCCCeEEEEEEEEeC--CCCCCCCCCCCCEEeccccCCCce
Q psy12426        154 QFH-----LCPIWEKCAQ--------TEGDTPKGKVLDLIEGNQYEFRVLAVNK--GGPGEPSDPTAPHIARAKKVSPYI  218 (616)
Q Consensus       154 ~~~-----~~~~~~~~~~--------~~~~~~~l~i~~l~~~~~~~y~c~a~n~--~g~~~~s~~~~~~~~~~~~~~P~~  218 (616)
                      ...     ..........        .......|.|.++...|.|.|+|.|.|.  .|.....     +.+.        
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~-----~~l~--------  290 (363)
T 1wio_A          224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQE-----VNLV--------  290 (363)
T ss_dssp             CCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEE-----EEEE--------
T ss_pred             ceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEE-----EeEE--------
Confidence            000     0111111100        1233458999999999999999999998  7742211     1111        


Q ss_pred             eccCCcceEEEcCCeEEEEEEEeeecCce--eEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        219 NRDQLSDIKVRAGSNFEFDINVIGEPIPT--KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       219 ~~~~~~~~~v~~g~~~~l~c~~~~~p~~~--~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                             +....|+.+.|.|.+.+.|.+.  +.|++++..+..+           ..|.|.++...|.|.|+|.|.|. |
T Consensus       291 -------V~~v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~-----------~~l~i~~v~~~d~G~Y~C~a~~~-~  351 (363)
T 1wio_A          291 -------VMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS-----------KREKAVWVLNPEAGMWQCLLSDS-G  351 (363)
T ss_dssp             -------EEEECCCSSSEEEEEESSCCTTCCEEEECSSSSCSEE-----------ESSSEEEESSCCSEEEEEEECSS-S
T ss_pred             -------EEEecCCCeeEEEEEccccCCCccEEEEeCCCceeee-----------eeeeeeeeccccceeEEEEEecC-C
Confidence                   1112388899999999999888  9999999776532           25677889999999999999964 5


Q ss_pred             CceeeEEEEE
Q psy12426        297 TDKGTAKVTV  306 (616)
Q Consensus       297 ~~~~~~~l~v  306 (616)
                      ....+..+.|
T Consensus       352 ~~~~~~~~~V  361 (363)
T 1wio_A          352 QVLLESNIKV  361 (363)
T ss_dssp             SCCEEEEEEE
T ss_pred             eEEEecceEe
Confidence            5555555554

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.78  E-value=3.9e-19  Score=157.71  Aligned_cols=123  Identities=11%  Similarity=-0.102  Sum_probs=89.2

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW  250 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W  250 (616)
                      ...|.|.+++.+|.|.|+|.|.|..|.....   ..+.+   ..||.+ ...+....+.+|+.+.|.|.+.|.|.|.+.|
T Consensus        68 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~---~~l~V---~~p~~~-~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W  140 (203)
T 4fa8_A           68 TFFLVVTAANISHDGNYLCRMKLGETEVTKQ---EHLSV---VKPLTL-SVHSERSQFPDFSVLTVTCTVNAFPHPHVQW  140 (203)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEE---EEEEE---EEEEEE-EEEEEECCSSCSCCEEEEEEEEEESCCEEEE
T ss_pred             EEEEEEccCCHHHCeEEEEEEEcCCCcEEEE---EEEEe---cCCcee-eecceeEEEcCCCEEEEEEEcCCCCCCEEEE
Confidence            3479999999999999999999988764321   11222   123444 3445566778999999999999999999999


Q ss_pred             EECCeeec----ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        251 LCNDITII----SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       251 ~~~~~~~~----~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      ++++..+.    ...++.+..++.-..+.|.++...|.|.|+|.|.|..|....
T Consensus       141 ~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          141 LMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             CCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             EECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            98765442    234555555565556777899999999999999999998754

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.78  E-value=1e-17  Score=151.18  Aligned_cols=190  Identities=15%  Similarity=0.161  Sum_probs=136.1

Q ss_pred             CCCCCCCCccceee-cCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC------CCEEEccc---cccceEEeccccCCCe
Q psy12426        309 IPSPPEGPLKPSNI-TKSSCNLEWRAPRDDGGTDILHYVVEKMDMET------GRWVPMGD---VSGTYTRAENLIEGHD  378 (616)
Q Consensus       309 ~p~~p~~~~~~~~~-~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~------~~~~~~~~---~~~~~~~i~~L~~~~~  378 (616)
                      +|.+|.+ +.+... ....+.++|.++.+. +. ...|.|.++....      ..+..+..   .....+.+.+|.+++.
T Consensus         4 pP~~P~~-l~c~~~~~~~~~~~~W~p~~~~-~~-~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~   80 (215)
T 1cd9_B            4 PPASPSN-LSCLMHLTTNSLVCQWEPGPET-HL-PTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQY   80 (215)
T ss_dssp             CCCCCEE-EEEEEETTTTEEEEEEECCSCC-SS-CCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSC
T ss_pred             CCCCCee-eeeecCCCcccEEEEecCCCCC-CC-ceeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccceE
Confidence            5566665 555555 578999999976553 33 3569999876432      12333321   2345677789999999


Q ss_pred             EEEEEEEEecCcCCCCccccCCEEccC-CCCCCCCCCCCEEEEe------cCCeEEEEecCCCCCCCCcceeEEEEEe-e
Q psy12426        379 YNFRVKAVNKIGESLPLVCQSPITAKD-PFGRPDRPGQPTVTDW------GKDHVDLEWTPPKKDGGSPISQYIIEKK-P  450 (616)
Q Consensus       379 y~~~v~a~n~~g~~~~~~~s~~~~~~~-~~~~p~~p~~~~~~~~------~~~~v~l~W~~p~~~~~~~i~~Y~i~~~-~  450 (616)
                      |.|+|.|.|..|.+.    +..+.+.. ...+|++|.++.+...      ..+++.|+|++|.. ++..+.+|+|+|+ .
T Consensus        81 Y~~~V~A~N~~G~~~----s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~-~~~~~l~Y~v~y~~~  155 (215)
T 1cd9_B           81 MAIWVQAENMLGSSE----SPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWKP-SEYMEQECELRYQPQ  155 (215)
T ss_dssp             EEEEEEEEETTEEEE----CCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCGG-GTTSCEEEEEEEEES
T ss_pred             EEEEEEEECCCCCcc----CccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCCC-CCeEEEEEEEEEccC
Confidence            999999999998753    22233322 2246888888877665      57889999998764 3444579999999 5


Q ss_pred             CCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccC
Q psy12426        451 KYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR  506 (616)
Q Consensus       451 ~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~  506 (616)
                      .++ .|............+.|.+|.|++.|.|+|+|.+..|.|.+|..+..+...+.
T Consensus       156 ~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T~  212 (215)
T 1cd9_B          156 LKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPT  212 (215)
T ss_dssp             STTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECCC
T ss_pred             CCCCCcEEEecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceecC
Confidence            555 78765444455788999999999999999999999999888888877766543

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.78  E-value=2.2e-17  Score=163.37  Aligned_cols=293  Identities=16%  Similarity=0.078  Sum_probs=193.3

Q ss_pred             CCeEEEEEEEE-eC---CCCCCCCCCCCCEEecccc-CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCee
Q psy12426        182 GNQYEFRVLAV-NK---GGPGEPSDPTAPHIARAKK-VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDIT  256 (616)
Q Consensus       182 ~~~~~y~c~a~-n~---~g~~~~s~~~~~~~~~~~~-~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~  256 (616)
                      ...+..++++. ++   .|....|+++......... ..+.   -.|.+..+..|+++++.|.....   .....     
T Consensus       162 c~~h~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~~~~~~~---ifP~~~vv~~GS~vt~~Ci~~~~---~~~~~-----  230 (483)
T 3e0g_A          162 CAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTK---VFPQDKVILVGSDITFCCVSQEK---VLSAL-----  230 (483)
T ss_dssp             SSCEEEEEEEEEECTTCCSEECCCCCCCCEEECCCCCSSCC---EESCSEEEETTCCEEEEECCSSC---EEEEE-----
T ss_pred             CCccEEEEEEEecccccCCCCCCcCCCChhhccccCCCCcE---EeccCCEEeCCCCEEEEEEeCcc---cccee-----
Confidence            44667777776 33   4555566666544443211 1222   23677889999999999987632   11111     


Q ss_pred             ecccCcEEEEecCCceEEEecCCCCC--CcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCC
Q psy12426        257 IISKDRFKIVNDDKSTKLKVFDSKRG--DSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAP  334 (616)
Q Consensus       257 ~~~~~~~~~~~~~~~~~l~i~~l~~~--~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~  334 (616)
                      +................++|.|+...  ....|.|...    .......+.+..+|.+|.+ +.+.......+.++|.++
T Consensus       231 l~~~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~----~~~~g~~l~vg~PP~~P~n-lsC~s~~~~sltCsW~pg  305 (483)
T 3e0g_A          231 IGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTE----DNIFGTVIFAGYPPDTPQQ-LNCETHDLKEIICSWNPG  305 (483)
T ss_dssp             SSSCCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEES----SCEEEEEEEEECCCCCCEE-EEEEBSSTTEEEEEEECC
T ss_pred             cCcccceeEEecCCEEEEEEeCCCCccCccceEEEecC----CcccceEEECcCCCCCCCc-cEEEecCCCEEEEEECCC
Confidence            22122222334555678899988763  3346888752    2345567888888888887 666666677999999976


Q ss_pred             CCCC--CCceEEEEEEEEeCCCCCEEEccc-----cccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCC
Q psy12426        335 RDDG--GTDILHYVVEKMDMETGRWVPMGD-----VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF  407 (616)
Q Consensus       335 ~~~~--~~~i~~y~v~~~~~~~~~~~~~~~-----~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~  407 (616)
                      .+.+  +.....|.|.++..+.  ...+..     .....+.+..|.+.+.|.|+|.|.|..|.+..   ...+.+ ...
T Consensus       306 ~dt~l~G~~~t~YtL~y~~~g~--~~~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~S---~~~~~~-~~~  379 (483)
T 3e0g_A          306 RVTALVGPRATSYTLVESFSGK--YVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQS---TILVNI-TEK  379 (483)
T ss_dssp             SCCSCCGGGCCEEEEEETTTCC--EEEECCCSSCSCSCEEEEEECCTTCCCEEEEEEEECSSCEEEE---EEEECG-GGG
T ss_pred             CcCCcCCCCCeeEEEEEEECCC--CccccCCcccCCCEEEEEEccCCCCcEEEEEEEEEeCCCCccc---ceEEEe-ccc
Confidence            6543  3347899999875422  122221     23457888999999999999999999997652   112211 234


Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecC---CccEEEcCCCCCCCeEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPA---NITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~---~~~~~~l~~L~p~t~Y~~~  482 (616)
                      ..|.+|.++.+...+.+.+.|+|.+|...++ .+..|+|+|+..++  .|... ...+   ....+.|.+|.|++.|.||
T Consensus       380 VkP~PP~nl~v~~~~stsl~LsW~~P~~~~~-~~L~YeVrYr~~~~~~~~~~v-sv~~~~~~~~s~~l~~L~PgT~Y~vr  457 (483)
T 3e0g_A          380 VYPHTPTSFKVKDINSTAVKLSWHLPGNFAK-INFLCEIEIKKSNSVQEQRNV-TIQGVENSSYLVALDKLNPYTLYTFR  457 (483)
T ss_dssp             BCCCCCEEEEECCSSSSSCCEEEECCSCCTT-SBCCCEEEEECSSSCCCEEEC-CCBCCSSSBCCCCCCSCCSSSSCEEE
T ss_pred             cCCCCCeeeEEEEecCCeEEEEECCCCCCCC-ceEEEEEEEEECCCCCceEEE-EEeccCCceeEEEEeccCCCcEEEEE
Confidence            5788999999887788999999998864433 47889999998876  24432 2221   2346789999999999999


Q ss_pred             EEEEcCCCCCCCCCCCC
Q psy12426        483 VIAVNKGGPGEPSKASA  499 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~  499 (616)
                      |+|. ..|.|.+|..+.
T Consensus       458 VRA~-~~g~g~WSeWS~  473 (483)
T 3e0g_A          458 IRCS-TETFWKWSKWSN  473 (483)
T ss_dssp             EECC-CSSCCCCCCCCC
T ss_pred             EEEe-eCCCCCcCCCCC
Confidence            9999 667644444443

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.78  E-value=1.1e-18  Score=176.86  Aligned_cols=264  Identities=7%  Similarity=-0.087  Sum_probs=152.8

Q ss_pred             CCCCceEecCCCeEEEEEEEeeec--CCeeeeeeCC--eeeee-----------------ccceEEEeecCCCCCceeEe
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEP--VPHVDWRAGG--NPLNL-----------------RPIWEKCAQTEGDTPKGKVL   65 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~~l~~-----------------~G~Y~C~a~n~~~~~~~~v~   65 (616)
                      ..|..+.+.+|++|.|.|.+.|.+  .+.|.|+|+.  ..+..                 .|+|.-..            
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~------------   72 (444)
T 1igt_B            5 QESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISR------------   72 (444)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEE------------
T ss_pred             ecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEE------------
Confidence            347788999999999999998874  5789999863  32210                 11211110            


Q ss_pred             eeccCCccceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCC--C-CCCCCC-------cceeecCCC-------
Q psy12426         66 DLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG--E-PSDPTA-------PHIARAKKG-------  128 (616)
Q Consensus        66 ~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~--~-~~~~~~-------~~~~~~~~p-------  128 (616)
                                  .  ......+|.|.+++..|+|.|.|.|.|..+..  . ......       ...+....|       
T Consensus        73 ------------~--~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g  138 (444)
T 1igt_B           73 ------------D--NAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTG  138 (444)
T ss_dssp             ------------E--TTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCS
T ss_pred             ------------e--CCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCC
Confidence                        0  01224589999999999999999999875431  0 010000       001110011       


Q ss_pred             ceee----eecC-ccc-ccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCC
Q psy12426        129 KCYH----LVGT-LLK-DSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD  202 (616)
Q Consensus       129 ~~~~----~~g~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~  202 (616)
                      ..+.    ..|. |.+ .+.|++  ++....  ............-.....|.|.++..+| |.|+|.|.|..|..... 
T Consensus       139 ~~v~L~C~~~g~~P~p~~v~W~~--~~~~~~--~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~-  212 (444)
T 1igt_B          139 SSVTLGCLVKGYFPEPVTLTWNS--GSLSSG--VHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD-  212 (444)
T ss_dssp             SCEEEEEEEEEEBSSCCEEEEGG--GTBCTT--EEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEE-
T ss_pred             CcEEEEEEEcceeCCCcEEEEec--CCCCCC--eEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceE-
Confidence            1111    1153 655 788887  422211  0000000000000011357888999888 99999999998753211 


Q ss_pred             CCCCEEe---------------ccccCCCceeccCCcceE-EEcCCeEEEEEEEeeec----CceeEEEECCeeecccCc
Q psy12426        203 PTAPHIA---------------RAKKVSPYINRDQLSDIK-VRAGSNFEFDINVIGEP----IPTKEWLCNDITIISKDR  262 (616)
Q Consensus       203 ~~~~~~~---------------~~~~~~P~~~~~~~~~~~-v~~g~~~~l~c~~~~~p----~~~~~W~~~~~~~~~~~~  262 (616)
                        ..+..               .....+|.+....+.... +..|+.+.|.|.+.+.+    .+.+.|++++..+.....
T Consensus       213 --~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~  290 (444)
T 1igt_B          213 --KKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQT  290 (444)
T ss_dssp             --EECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTC
T ss_pred             --EEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCccc
Confidence              00000               011124544222222222 57899999999999984    369999999987653321


Q ss_pred             E--EEEecC---CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        263 F--KIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       263 ~--~~~~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      .  ....++   ....|.|.++...|.|.|+|.|.|..|.......+
T Consensus       291 ~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v  337 (444)
T 1igt_B          291 QTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTI  337 (444)
T ss_dssp             BCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEE
T ss_pred             ccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEE
Confidence            1  111111   23489999999999999999999988876433433

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.78  E-value=2.3e-19  Score=181.67  Aligned_cols=263  Identities=12%  Similarity=0.056  Sum_probs=150.3

Q ss_pred             cCCCeEEEEEEEee-ecCC-eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecC
Q psy12426         15 SAGTTLKFDANIIG-EPVP-HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLD   92 (616)
Q Consensus        15 ~~g~~v~l~C~~~g-~P~p-~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~   92 (616)
                      .+|+.+.|.|.+.| .|.| .|+|+|+|..+.....+.-.....   ..+..                  .....|.|.+
T Consensus       129 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~---~~~~~------------------~~~~~L~i~~  187 (438)
T 1qgc_4          129 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDS---KDSTY------------------SMSSTLTLTK  187 (438)
T ss_dssp             HHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCT---TTCCE------------------EEEEEEEEEH
T ss_pred             ccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccC---CCCcE------------------EEEEEEEEeC
Confidence            45889999999987 7777 899999998876321111100000   00000                  0023688889


Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCC----cceeecCCC------ceee----eecCc--ccccEEEEeecc-C-cccc
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTA----PHIARAKKG------KCYH----LVGTL--LKDSIYEQLKRS-G-LFDQ  154 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~----~~~~~~~~p------~~~~----~~g~p--~~~~~~~~~~~~-~-~~~~  154 (616)
                      +...|.|.|.|.|.|..|.........    ...+....+      ..+.    +.|.|  .+.+.|++  +. | .+..
T Consensus       188 ~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k--~~~g~~~~~  265 (438)
T 1qgc_4          188 DEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVR--QTPEKRLEW  265 (438)
T ss_dssp             HHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEE--EETTTEEEE
T ss_pred             cccCCCCeEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEE--CCCCCCcEE
Confidence            999999999999999877642110000    000000001      1111    22666  56889988  41 1 1000


Q ss_pred             c--------------ccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCC--CCCCCCCEEecc-ccCCCc
Q psy12426        155 F--------------HLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE--PSDPTAPHIARA-KKVSPY  217 (616)
Q Consensus       155 ~--------------~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~--~s~~~~~~~~~~-~~~~P~  217 (616)
                      .              ...++.............|.|.+++.+|.|.|+|.|.|..+...  .......+.+.. ...+|.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~  345 (438)
T 1qgc_4          266 VATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPS  345 (438)
T ss_dssp             EEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCE
T ss_pred             EEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCe
Confidence            0              00111211111123345899999999999999999998654211  100111233332 223455


Q ss_pred             eeccCCcceEEEcCCeEEEEEEEeee-cCc-eeEEEECCeeecccCcEEEEecCC---ceEEEecCCCCCCcEEEEEEEE
Q psy12426        218 INRDQLSDIKVRAGSNFEFDINVIGE-PIP-TKEWLCNDITIISKDRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       218 ~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      +....+. ..+..|+.+.|.|.+.+. |.+ .+.|++++..+.......+...+.   .+.|.|.++...| |.|+|.|.
T Consensus       346 v~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~  423 (438)
T 1qgc_4          346 VYPLAPG-SAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVA  423 (438)
T ss_dssp             EEEECCC-GGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEE
T ss_pred             EEEcCcc-cccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEE
Confidence            4322222 235579999999999997 877 999999987764221111111211   1368888888778 99999999


Q ss_pred             cCCCCceeeE
Q psy12426        293 NSWGTDKGTA  302 (616)
Q Consensus       293 n~~g~~~~~~  302 (616)
                      |..|......
T Consensus       424 n~~g~~~~~~  433 (438)
T 1qgc_4          424 HPASSTKVDK  433 (438)
T ss_dssp             EGGGTEEEEE
T ss_pred             eCCCCcceee
Confidence            9888765443

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.78  E-value=1.8e-17  Score=159.05  Aligned_cols=134  Identities=8%  Similarity=0.005  Sum_probs=98.0

Q ss_pred             ecCCCCCCcEEEEEEEEcCCCCcee-eEEEEEe--cCCCCCCCCccceee------cCCeEEEEEeCCCCCCCCceEEEE
Q psy12426        276 VFDSKRGDSGIYTLAVKNSWGTDKG-TAKVTVL--DIPSPPEGPLKPSNI------TKSSCNLEWRAPRDDGGTDILHYV  346 (616)
Q Consensus       276 i~~l~~~~~g~y~c~a~n~~g~~~~-~~~l~v~--~~p~~p~~~~~~~~~------~~~~~~l~W~~~~~~~~~~i~~y~  346 (616)
                      ..+|.+...|.++|.|.|..|.... ...+...  .+|.+|.+ +.+...      ..+.+.|+|++|... +..+..|.
T Consensus       166 ~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~-~~~~~~~~~~~~~~~~l~l~W~~p~~~-~~~~l~Y~  243 (313)
T 2d9q_B          166 RKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPML-RTMDPSPEAAPPQAGCLQLSWEPWQPG-LHINQKCE  243 (313)
T ss_dssp             GGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEE-EECCC-------CCSCEEEEEECCGGG-TTSCEEEE
T ss_pred             ccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCce-eEEEEecccccCCCCeEEEEECCCCCC-CceeEEEE
Confidence            3459999999999999999987532 2222222  24667765 554443      457899999987643 33468999


Q ss_pred             EEEE-eCCCCCEEEcc--ccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCC
Q psy12426        347 VEKM-DMETGRWVPMG--DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD  411 (616)
Q Consensus       347 v~~~-~~~~~~~~~~~--~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~  411 (616)
                      |+|+ ..+...|....  ......+.+.+|.+++.|.|+|+|.|..|.|.++.++..+.+.+...+|.
T Consensus       244 v~y~~~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~  311 (313)
T 2d9q_B          244 LRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA  311 (313)
T ss_dssp             EEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC----
T ss_pred             EEEccCCCCCCcEEcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCCC
Confidence            9999 66667787653  23456799999999999999999999999999998899998887766553

>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E

Probab=99.77  E-value=3.1e-19  Score=194.63  Aligned_cols=229  Identities=17%  Similarity=0.130  Sum_probs=167.6

Q ss_pred             ceEEEecCCCCCCcEEEEEEE-EcCCCC----ceeeEEEEEecC---CCCCCCCccceeecCCeEEEEEeCCCCCCCCce
Q psy12426        271 STKLKVFDSKRGDSGIYTLAV-KNSWGT----DKGTAKVTVLDI---PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDI  342 (616)
Q Consensus       271 ~~~l~i~~l~~~~~g~y~c~a-~n~~g~----~~~~~~l~v~~~---p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i  342 (616)
                      ...+.|.+|.+...|.|++.| .|..|.    +..+..+.+.+.   |.+|.+ +.+...+.+++.|+|.+|...++ .+
T Consensus       548 ~~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T~~~~Ps~P~~-l~~~~~s~tsI~LsW~pP~~~nG-~I  625 (897)
T 2dtg_E          548 HPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLD-PISVSNSSSQIILKWKPPSDPNG-NI  625 (897)
T ss_dssp             CCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCCCCCCCCCEE-EEEEECSSSCEEEEEECCCCSSS-SC
T ss_pred             ccceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEECCCCCCcCCcc-eEEEeCCCCEEEEEEeCCCCCCC-Ce
Confidence            357899999999999999999 888776    344444455544   444444 56667778899999998865544 69


Q ss_pred             EEEEEEEEeCCCC-----------------------------------------------------------------CE
Q psy12426        343 LHYVVEKMDMETG-----------------------------------------------------------------RW  357 (616)
Q Consensus       343 ~~y~v~~~~~~~~-----------------------------------------------------------------~~  357 (616)
                      .+|.|+|+.....                                                                 .|
T Consensus       626 ~~Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W  705 (897)
T 2dtg_E          626 THYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTF  705 (897)
T ss_dssp             SEEECCEEEECCCCSCTTCSSSCSCCCCCC--------------------------------------------------
T ss_pred             eEEEEEEEECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhhhhhhhheeeeE
Confidence            9999988653210                                                                 11


Q ss_pred             EEc---------------------------------cccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEcc
Q psy12426        358 VPM---------------------------------GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK  404 (616)
Q Consensus       358 ~~~---------------------------------~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~  404 (616)
                      ...                                 .......+.+.+|.+++.|.|+|.|.|..|.+.....+..+.+.
T Consensus       706 ~~~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~  785 (897)
T 2dtg_E          706 EDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSAR  785 (897)
T ss_dssp             ------------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEE
T ss_pred             EEccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEe
Confidence            100                                 00123678999999999999999999999987643224555555


Q ss_pred             CCC--CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceE-eE--eecCCccEEEcCCCCCCCeE
Q psy12426        405 DPF--GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK-AC--IVPANITATSVPDLKEGEEY  479 (616)
Q Consensus       405 ~~~--~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~-~~--~~~~~~~~~~l~~L~p~t~Y  479 (616)
                      +..  .+|.+|.++.+...+.+++.|+|.+|..+++ .|.+|.|+|+..++.+.. ..  ........++|.+|.|+ +|
T Consensus       786 T~~~~~~p~~P~~l~~~~~~~~sv~LsW~~P~~~nG-~I~~Y~V~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~pg-tY  863 (897)
T 2dtg_E          786 TMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NY  863 (897)
T ss_dssp             CCCCCCCCCCCCCCCCCSSSSSCCCCCCCCCCSCSS-CEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EE
T ss_pred             ccCccCCCCCCcceEEEeCCCCEEEEEECCCCCCCC-CEEEEEEEEEECCCcceEEEEeeeeecccCcEEECCCCCC-cE
Confidence            543  5678888998888889999999998876555 599999999887642221 11  11345678999999999 69


Q ss_pred             EEEEEEEcCCCCCCCCCCCCCEEe
Q psy12426        480 EFRVIAVNKGGPGEPSKASAPVTC  503 (616)
Q Consensus       480 ~~~v~a~n~~G~g~~s~~~~~~~~  503 (616)
                      .|+|+|.|..|.|++|.+..+.+.
T Consensus       864 ~~rV~A~n~~G~G~~S~~v~~~T~  887 (897)
T 2dtg_E          864 SVRIRATSLAGNGSWTEPTYFYVT  887 (897)
T ss_dssp             CCCCCEEETTBCCCCCCCCEECCC
T ss_pred             EEEEEEEeCCcccCCCCCEEEEeC
Confidence            999999999999999987655443

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.77  E-value=1e-16  Score=163.70  Aligned_cols=301  Identities=12%  Similarity=0.021  Sum_probs=160.5

Q ss_pred             CCCCceEecCCCeEEEEEEEeeec--CCeeeeeeCC--eeeeeccceEEEeecC----CCCCceeEeeeccCCccceeec
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEP--VPHVDWRAGG--NPLNLRPIWEKCAQTE----GDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~~l~~~G~Y~C~a~n~----~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      +.|..+.+.+|++|+|.|.+.|.+  .+.|.|||+.  +.+..- .|. ...+.    .....+++...           
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~R~~~~-----------   72 (475)
T 1iga_A            6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWM-GWI-SAGTGNTKYSQKFRGRVTFT-----------   72 (475)
T ss_pred             ccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEE-EEE-ecCCCceecCcccCCceEEE-----------
Confidence            458899999999999999998875  6789999963  222100 000 00000    00001111100           


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCCCC------CCCCCCCc-------ceeecCCC------ceee----eec
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG------EPSDPTAP-------HIARAKKG------KCYH----LVG  135 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~------~~~~~~~~-------~~~~~~~p------~~~~----~~g  135 (616)
                      ........+|.|.++++.|+|.|.|.+.|..|..      .......+       ..+....+      ..+.    ..|
T Consensus        73 ~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g  152 (475)
T 1iga_A           73 RDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQG  152 (475)
T ss_pred             EcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEee
Confidence            0001234589999999999999999999976521      01100000       00111111      1111    125


Q ss_pred             C-cc-c-ccEEEEeeccCcccccccCCCceEecccCCC----CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEE
Q psy12426        136 T-LL-K-DSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD----TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI  208 (616)
Q Consensus       136 ~-p~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~  208 (616)
                      . |. + .+.|++  + +...   ............++    ...|.|......|.|.|+|.|.|..+....    ..+.
T Consensus       153 ~~P~~p~~v~W~~--~-~~~~---~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~----~~v~  222 (475)
T 1iga_A          153 FFPQEPLSVTWSE--S-GQGV---TARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQD----VTVP  222 (475)
T ss_pred             ecCCCceEEEEcC--C-Cccc---ceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCcee----eeEe
Confidence            4 54 3 788876  4 2100   00000000000111    124778888889999999999998763211    1121


Q ss_pred             ecc-----------------ccCCCceeccCCcceEEEcCCeEEEEEEEeeecC---ceeEEEECCeeecccCc--EEEE
Q psy12426        209 ARA-----------------KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI---PTKEWLCNDITIISKDR--FKIV  266 (616)
Q Consensus       209 ~~~-----------------~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~---~~~~W~~~~~~~~~~~~--~~~~  266 (616)
                      ...                 ...+|.+....+....+..|+.+.|.|.+.+.+.   +.+.|  ++..+.....  ....
T Consensus       223 l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~  300 (475)
T 1iga_A          223 CPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERD  300 (475)
T ss_pred             cccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceEC
Confidence            100                 0024444233333334679999999999998754   68999  4333321111  1111


Q ss_pred             ecC---CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccce------eecCCeEEEEEeCC
Q psy12426        267 NDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPS------NITKSSCNLEWRAP  334 (616)
Q Consensus       267 ~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~------~~~~~~~~l~W~~~  334 (616)
                      ..+   ....|.|.++...|.|.|+|.|.|..|.......+.+.....+|.  +.+.      ...+..+.|.|...
T Consensus       301 ~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~--v~~~~~~~~~v~~g~~~~L~C~~~  375 (475)
T 1iga_A          301 LCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE--VHLLPPPSEELALNELVTLTCLAR  375 (475)
T ss_pred             CCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCe--EEEECCChHHhccCCceEEEEEEe
Confidence            011   234799999999999999999999888765444443322222222  1111      12345688888753

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.77  E-value=3.1e-18  Score=153.98  Aligned_cols=147  Identities=26%  Similarity=0.389  Sum_probs=116.8

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeec---CCccEEEcCCCCCCCeEEEE
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVP---ANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~---~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      ..+|++|.++.+...+. ++.|+|.+|..+++.++.+|.|+|+..+. .|.......   +....+++.+|.|++.|.|+
T Consensus         6 ~~~P~~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   84 (209)
T 2vkw_A            6 ADTPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   84 (209)
T ss_dssp             CCCCCCCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCCCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEE
T ss_pred             cCCCcCCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCCCceEeEeeccCCCccceEEeCCCCCCCeEEEE
Confidence            46788999999988777 68999998876677679999999998876 776654321   33569999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCC
Q psy12426        483 VIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSK  562 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~  562 (616)
                      |+|.|..|.|++|......+...                                                 .+|.+|..
T Consensus        85 V~A~n~~G~~~~s~~~~~~T~~~-------------------------------------------------~~P~~P~~  115 (209)
T 2vkw_A           85 LAALNGKGLGEISAASEFKTQPV-------------------------------------------------REPSAPKL  115 (209)
T ss_dssp             EEEEETTEECCCCCCEEEECCCS-------------------------------------------------CSCCCCEE
T ss_pred             EEEEcCCcccCCcccccccccCC-------------------------------------------------CCCCCCcc
Confidence            99999999998886544322110                                                 14667777


Q ss_pred             CeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCCCeEE
Q psy12426        563 PEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIK  605 (616)
Q Consensus       563 ~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~w~~  605 (616)
                      +.+...+.++|.|+|++| .+.++.|.+|.|.|+. +.++|..
T Consensus       116 ~~~~~~~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~-~~~~~~~  156 (209)
T 2vkw_A          116 EGQMGEDGNSIKVNLIKQ-DDGGSPIRHYLVRYRA-LSSEWKP  156 (209)
T ss_dssp             EEEECTTSSCEEEEEECC-CCTTSCCCEEEEEEEE-TTSCCCC
T ss_pred             cccccccCCeEEEEEECc-ccCCCCCceEEEEEEC-CCCCCce
Confidence            777888999999999998 4558999999999998 6667764

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.77  E-value=5.1e-18  Score=156.57  Aligned_cols=142  Identities=15%  Similarity=0.184  Sum_probs=87.3

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL  251 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~  251 (616)
                      .|.|.+++..|.|.|+|.|.|..|.....   ..+.+.. ...+|.+....+....+..|+.+.|.|.+.+.|.+.+.|+
T Consensus        73 ~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~---~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~  149 (241)
T 3grw_A           73 SLVMESVVPSDRGNYTCVVENKFGSIRQT---YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL  149 (241)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEE---EEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEE
T ss_pred             EEEEEeCCcccCEEEEEEEeecCCceEEE---EEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEE
Confidence            45555555555555555555544432111   1111111 1123333344456677889999999999999999999999


Q ss_pred             E----CCeeecccCcEEEE--------ecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCc
Q psy12426        252 C----NDITIISKDRFKIV--------NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPL  317 (616)
Q Consensus       252 ~----~~~~~~~~~~~~~~--------~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~  317 (616)
                      +    ++..+.........        .......|.|.++...|.|.|+|.|.|..|....++.|.|..+|.++...+
T Consensus       150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~v  227 (241)
T 3grw_A          150 KHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELV  227 (241)
T ss_dssp             EECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-----------
T ss_pred             EcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCccce
Confidence            9    77766543321111        111245899999999999999999999999999999999998888776543

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.77  E-value=1.8e-17  Score=145.50  Aligned_cols=119  Identities=16%  Similarity=0.206  Sum_probs=81.8

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCc-eeEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWL  251 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~  251 (616)
                      .|.|.+++..|.|.|+|.|.|..|......  ..+.+   ..+|.+. ..+....+..|+.+.|.|.+.+.|.+ .+.|+
T Consensus        61 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~--~~l~V---~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~  134 (182)
T 1rhf_A           61 FLSLKSVERSDAGRYWCQVEDGGETEISQP--VWLTV---EGVPFFT-VEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWW  134 (182)
T ss_dssp             EEEESSCCGGGCEEEEEEESSCTTCEECCC--EEEEE---ECSCEEE-ECCCCEEECTTCCEEEEEEEECSSSCCEEEEE
T ss_pred             EEEEeecCcccCeEEEEEEEcCCCcEEEEE--EEEEE---ecCCeEE-ecCcceEecCCCEEEEEeEecCCCCCCEEEEE
Confidence            456666666667777777666544211111  11221   1345553 23455788999999999999999999 99999


Q ss_pred             ECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce-eeEEEEE
Q psy12426        252 CNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-GTAKVTV  306 (616)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~-~~~~l~v  306 (616)
                      +++..+.....       ....|.|.++  .|.|.|+|.|.|..|... .++.|.|
T Consensus       135 ~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          135 RGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             ETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            99988754321       3458999998  488999999999988774 3666654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.76  E-value=8.1e-18  Score=154.10  Aligned_cols=140  Identities=17%  Similarity=0.267  Sum_probs=91.5

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccc-cCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL  251 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~-~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~  251 (616)
                      .|.|.++...|.|.|+|.|.|..|.....   ..+.+... ..+|.+....+....+..|+.+.|.|.+.+.|.+.+.|+
T Consensus        77 ~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~---~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~  153 (231)
T 3ojm_B           77 SLIMESVVPSDKGNYTCVVENEYGSINHT---YHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWI  153 (231)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEEE---EEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEE
T ss_pred             eEEEecCCcccCEEEEEEEecccCccccc---EEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEE
Confidence            45555555566666666665554432111   11111111 123444344456788999999999999999999999999


Q ss_pred             E----CCeeecccCc--EEEEe-----cCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCC
Q psy12426        252 C----NDITIISKDR--FKIVN-----DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG  315 (616)
Q Consensus       252 ~----~~~~~~~~~~--~~~~~-----~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~  315 (616)
                      +    ++..+..+..  .....     ......|.|.++...|.|.|+|.|.|..|....++.+.+..+|.+|..
T Consensus       154 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p~~  228 (231)
T 3ojm_B          154 KHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGR  228 (231)
T ss_dssp             EECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-----
T ss_pred             ECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCCcc
Confidence            9    7766643322  11111     122357999999999999999999999999999999999998888764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.76  E-value=5.3e-18  Score=149.94  Aligned_cols=81  Identities=23%  Similarity=0.419  Sum_probs=68.8

Q ss_pred             ceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...  ...|.|.++...|.|.|+|.|.|..|....++.+
T Consensus       107 ~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  184 (189)
T 2v5t_A          107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGS--NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL  184 (189)
T ss_dssp             EEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETT--TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecC--CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEE
Confidence            34566899999999999999999999999999877776665533  3489999999999999999999999988877777


Q ss_pred             EEe
Q psy12426        305 TVL  307 (616)
Q Consensus       305 ~v~  307 (616)
                      .|.
T Consensus       185 ~V~  187 (189)
T 2v5t_A          185 QVF  187 (189)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.76  E-value=2.8e-17  Score=147.57  Aligned_cols=184  Identities=22%  Similarity=0.220  Sum_probs=133.8

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc---cccceE--EeccccCCCeEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD---VSGTYT--RAENLIEGHDYNFR  382 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~~--~i~~L~~~~~y~~~  382 (616)
                      .+|.+|.+ +.+.......+.++|+++... +. ...|.|+++..+...|..+..   .....+  .+.+|.+.+.|.|+
T Consensus         2 ~pP~~P~n-l~c~~~~~~~~~c~W~p~~~~-~~-~~~Y~l~y~~~~~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~   78 (210)
T 3n06_B            2 LPPGKPEI-FKCRSPNKETFTCWWRPGTDG-GL-PTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMM   78 (210)
T ss_dssp             CCCCCCEE-EEEEBSSSSCEEEEEECCSSS-CC-CSEEEEEEEETTCCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEE
T ss_pred             CCCCCCeE-eEEEeCCCCeEEEEECCCCCC-CC-CceEEEEEEECCCCccccCCCCCCCCCeEEEeCCCCcccceeEEEE
Confidence            35667776 677777888999999976543 32 468999998876667877643   122334  44579999999999


Q ss_pred             EEEEecCcCCCCccccCCEEccC-CCCCCCCCCCCEEEEec----CCeEEEEecCCCCCC---CCcceeEEEEEeeCCC-
Q psy12426        383 VKAVNKIGESLPLVCQSPITAKD-PFGRPDRPGQPTVTDWG----KDHVDLEWTPPKKDG---GSPISQYIIEKKPKYG-  453 (616)
Q Consensus       383 v~a~n~~g~~~~~~~s~~~~~~~-~~~~p~~p~~~~~~~~~----~~~v~l~W~~p~~~~---~~~i~~Y~i~~~~~~~-  453 (616)
                      |.|.|..|.+..    ..+.+.. ...+|++|.++.+....    .+++.|+|.+|....   +..+.+|+|+|+..++ 
T Consensus        79 V~A~N~~G~~~s----~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~~  154 (210)
T 3n06_B           79 VNATNQMGSSFS----DELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAA  154 (210)
T ss_dssp             EEEEETTEEEEC----CCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTCS
T ss_pred             EEEEcCCCCeeC----CcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCCC
Confidence            999999997642    2222221 23468888888887653    589999999876533   2246899999998766 


Q ss_pred             CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCC-CCCCCCCCC
Q psy12426        454 PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGP-GEPSKASAP  500 (616)
Q Consensus       454 ~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~-g~~s~~~~~  500 (616)
                      .|....  ......+.|.+|.|++.|.|+|+|.+..|. |++|....+
T Consensus       155 ~~~~~~--~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~  200 (210)
T 3n06_B          155 EWEIHF--AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFI  200 (210)
T ss_dssp             SCEEEE--EETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEE
T ss_pred             CCEEEe--ccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeE
Confidence            776543  344679999999999999999999998775 666654433

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.75  E-value=3.5e-18  Score=165.07  Aligned_cols=249  Identities=11%  Similarity=0.073  Sum_probs=145.9

Q ss_pred             CCccCCCCCCceEecC-CCeEEEEEEEeee-c-CCeeeeeeCCeeee----------------------e-------ccc
Q psy12426          1 APHIDRRHLGDIKLSA-GTTLKFDANIIGE-P-VPHVDWRAGGNPLN----------------------L-------RPI   48 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~-g~~v~l~C~~~g~-P-~p~v~W~~~~~~l~----------------------~-------~G~   48 (616)
                      ||.+...++....+.. |+.+.|.|.+.|. | .+.|+|+|||..+.                      +       +|.
T Consensus         7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~   86 (323)
T 2wqr_A            7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT   86 (323)
T ss_dssp             CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCc
Confidence            4666544333332333 2699999999986 4 47899999987642                      0       699


Q ss_pred             eEEEeecCCCCCceeEeeecc--CCccc-eeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeec
Q psy12426         49 WEKCAQTEGDTPKGKVLDLIE--GNHPI-WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA  125 (616)
Q Consensus        49 Y~C~a~n~~~~~~~~v~~~~~--~~~p~-w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~  125 (616)
                      |+|.|.|..+.....+..+..  ...|. +...      ..   ...+..|+...+.|.+.                   
T Consensus        87 Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~------p~---~~~v~~G~~v~L~C~~~-------------------  138 (323)
T 2wqr_A           87 YTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSR------PS---PFDLFIRKSPTITCLVV-------------------  138 (323)
T ss_dssp             EEEEEEETTEEEEEEECCCCCSSGGGCEEEECC------CC---HHHHHTSSCCEEEEEEE-------------------
T ss_pred             EEEEEEeCCCCcceeeecCCCCCCCCCEEEEcC------CC---HHHhccCCeEEEEEEEe-------------------
Confidence            999999975432222211100  00111 1110      00   01256788899999987                   


Q ss_pred             CCCceeeeecC-ccc---ccEEEEeeccCcccccccCCCceEecccCC---CCCeEEeecccCCCeEEEEEEEEeCCCCC
Q psy12426        126 KKGKCYHLVGT-LLK---DSIYEQLKRSGLFDQFHLCPIWEKCAQTEG---DTPKGKVLDLIEGNQYEFRVLAVNKGGPG  198 (616)
Q Consensus       126 ~~p~~~~~~g~-p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~~~y~c~a~n~~g~~  198 (616)
                               |. |.+   .+.|++  ++|...   ............+   ....|.|.+++.+|.|.|+|.|.|..+..
T Consensus       139 ---------g~~P~p~~~~i~W~k--~~g~~~---~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~  204 (323)
T 2wqr_A          139 ---------DLAPSKGTVQLTWSR--ASGKPV---NHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPR  204 (323)
T ss_dssp             ---------EECCCSSCCEEEEEE--TTCCCC---CCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             ---------ccCCCCCceEEEEEE--CCCccc---ccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCC
Confidence                     43 334   688988  543221   1111111000011   12369999999999999999999876422


Q ss_pred             CCCCCCCCEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCc-eeEEEECCeeecccCcEE---EEecCC
Q psy12426        199 EPSDPTAPHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-TKEWLCNDITIISKDRFK---IVNDDK  270 (616)
Q Consensus       199 ~~s~~~~~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~-~~~W~~~~~~~~~~~~~~---~~~~~~  270 (616)
                      .     ..+.+..   ...+|.+....+....+ .|+.+.|.|.+.+. |.+ .+.|++++..+.......   ....++
T Consensus       205 ~-----~~~~v~~~~~~~~~P~v~~~~~~~~~~-~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g  278 (323)
T 2wqr_A          205 A-----LMRSTTKTSGPRAAPEVYAFATPEWPG-SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGS  278 (323)
T ss_dssp             C-----EEEEECCCCSCCBCCEEEEEECCCCTT-CTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSS
T ss_pred             C-----eeeEEEccCCCCCCCEEEEeCCChHHh-cCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCC
Confidence            1     1122211   23456554222221112 39999999999985 433 799999999875432111   111111


Q ss_pred             ----ceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        271 ----STKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       271 ----~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                          ...|.|..+...|.|.|+|.|.|..+.
T Consensus       279 ~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          279 GFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             SEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             cEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence                247889998888999999999997665

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.75  E-value=4.5e-17  Score=146.87  Aligned_cols=93  Identities=23%  Similarity=0.433  Sum_probs=79.5

Q ss_pred             CceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       216 P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      |.+....+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+... +....|.|.++...|.|.|+|.|.|.
T Consensus       117 p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~  196 (212)
T 2r15_A          117 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK  196 (212)
T ss_dssp             CEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcC
Confidence            44444455678899999999999999999999999999999987777777655 55679999999999999999999999


Q ss_pred             CCCceeeEEEEEec
Q psy12426        295 WGTDKGTAKVTVLD  308 (616)
Q Consensus       295 ~g~~~~~~~l~v~~  308 (616)
                      .|.....+.+.+..
T Consensus       197 ~g~~~~~~~l~V~~  210 (212)
T 2r15_A          197 YGSETSDFTVSVFI  210 (212)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEc
Confidence            99888888887763

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.75  E-value=3.1e-17  Score=148.42  Aligned_cols=185  Identities=16%  Similarity=0.162  Sum_probs=130.8

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |+|.. .|+++.+.+|+.+.|.|.+.|.|.|.|+|+|++..+.                                     
T Consensus        19 ~~i~~-~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~-------------------------------------   60 (218)
T 3k0w_A           19 SKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP-------------------------------------   60 (218)
T ss_dssp             CCEEE-CCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECT-------------------------------------
T ss_pred             CEEEE-CCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECC-------------------------------------
Confidence            45654 4889999999999999999999999999999998776                                     


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCcccccEEEEeeccCcccccccCCCc
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIW  161 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~  161 (616)
                      ......|.|.++...|.|.|+|.|.|..|.....                                              
T Consensus        61 ~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~----------------------------------------------   94 (218)
T 3k0w_A           61 NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQ----------------------------------------------   94 (218)
T ss_dssp             TCCSSEEEETTCCGGGCEEEEEEEECTTCCEECC----------------------------------------------
T ss_pred             CCCCCEEEEccCChhhCeEeEEEEEcCCCCceee----------------------------------------------
Confidence            2224678999999999999999998654411000                                              


Q ss_pred             eEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEe
Q psy12426        162 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI  241 (616)
Q Consensus       162 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~  241 (616)
                               ...+.+......            ......         .....+|.+ ...+....+..|+.+.|.|.+.
T Consensus        95 ---------~~~l~V~~~~~~------------~~~~~~---------~~~~~~p~~-~~~~~~~~v~~G~~v~L~C~~~  143 (218)
T 3k0w_A           95 ---------WSQLDVCDIPES------------FQRSVD---------GVSESKLQI-CVEPTSQKLMPGSTLVLQCVAV  143 (218)
T ss_dssp             ---------CEEEEEECCCGG------------GCTTCC---------SBCCSSCEE-EECCCCEEECTTCCEEEECEEE
T ss_pred             ---------EEEEEEEccCcc------------cccccc---------cccCCCceE-EECCCceeecCCCcEEEEEEec
Confidence                     001222211100            000000         001122333 2334567889999999999999


Q ss_pred             eecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC-ceeeEEEEEecCC
Q psy12426        242 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKGTAKVTVLDIP  310 (616)
Q Consensus       242 ~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~l~v~~~p  310 (616)
                      +.|.+.+.|++++..+....         ...|.|.++...|.|.|+|.|.|..|. .+..+.+.|...+
T Consensus       144 g~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~  204 (218)
T 3k0w_A          144 GSPIPHYQWFKNELPLTHET---------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN  204 (218)
T ss_dssp             BSSCCEEEEEETTEECTTCC---------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred             ccCCCeEEEEECCEECCCCC---------CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence            99999999999998875432         238999999999999999999998887 4667777776543

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.75  E-value=2.4e-17  Score=147.31  Aligned_cols=189  Identities=15%  Similarity=0.197  Sum_probs=126.5

Q ss_pred             CccCCCCCCceEecCCCeEEEEEE-EeeecC-CeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDAN-IIGEPV-PHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~-~~g~P~-p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      |.+....+.++.+.+|+.+.|.|. +.|.|. +.|+|+|++..+..  .+...-                          
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~--------------------------   61 (201)
T 3s97_C            8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFV--------------------------   61 (201)
T ss_dssp             CCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEE--------------------------
T ss_pred             CccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEE--------------------------
Confidence            556667789999999999999999 999999 99999999976641  111000                          


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCcccccEEEEeeccCccccccc
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHL  157 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~~~~~~~~~~~~~~~~~~~  157 (616)
                          ......|.|.++...|.|.|+|.+.|..+....                             ..  .         
T Consensus        62 ----~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~-----------------------------~~--~---------   97 (201)
T 3s97_C           62 ----SQTNGNLYIANVEASDKGNYSCFVSSPSITKSV-----------------------------FS--K---------   97 (201)
T ss_dssp             ----CTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEE-----------------------------EC--C---------
T ss_pred             ----EcCCCeEEECcCCcccCeEEEEEEEecCCCcch-----------------------------hh--c---------
Confidence                112345666666666666677666643221000                             00  0         


Q ss_pred             CCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEE
Q psy12426        158 CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFD  237 (616)
Q Consensus       158 ~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~  237 (616)
                                     .+.+..           ..  . .             .....+|.+.... ....+..|+.+.|.
T Consensus        98 ---------------~~~~~~-----------~~--~-~-------------~~~~~~p~~~~~~-~~~~~~~g~~~~l~  134 (201)
T 3s97_C           98 ---------------FIPLIP-----------IP--E-R-------------TTKPYPADIVVQF-KDVYALMGQNVTLE  134 (201)
T ss_dssp             ---------------CEEEEE-----------EC--C-S-------------SCCCEEEEEEEEC-CCEEEETTCCEEEE
T ss_pred             ---------------ccceee-----------cc--c-c-------------ccCCCCCceEecC-CceEEecCCcEEEE
Confidence                           000000           00  0 0             0001234443332 36788999999999


Q ss_pred             EEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        238 INVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       238 c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      |.+.+.|.+.+.|++++..+....  .+..  ....|.|.++...|.|.|+|.|.|..|.....+.+.|.
T Consensus       135 C~~~g~p~p~v~W~~~~~~~~~~~--~~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          135 CFALGNPVPDIRWRKVLEPMPSTA--EIST--SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EEEEEESCCEEEEEETTBCCCTTC--EEET--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEccCCCCCceEEEeCCCcCCCce--eecC--CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            999999999999999998765442  2222  23489999999999999999999999988888887765

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.74  E-value=2.8e-17  Score=148.35  Aligned_cols=155  Identities=25%  Similarity=0.387  Sum_probs=120.8

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEe-----------ecCCccEEEcCCCCCC
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACI-----------VPANITATSVPDLKEG  476 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~-----------~~~~~~~~~l~~L~p~  476 (616)
                      +.+|.++++..++.+++.|+|.+|...+ +++.+|.|+|+..+.  .|.....           .......+++.+|.|+
T Consensus         2 ~~pP~~~~~~~~~~~sv~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   80 (214)
T 2ibg_A            2 TYPPTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQ   80 (214)
T ss_dssp             CCCCCCCEEEEEETTEEEEEEEEECCSS-CCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTT
T ss_pred             CCCCCCCEeeEecCCEEEEEEECCCCCC-CCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCC
Confidence            4567788888899999999999876655 479999999998643  6765431           1134678999999999


Q ss_pred             CeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecC
Q psy12426        477 EEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNV  556 (616)
Q Consensus       477 t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (616)
                      +.|.|+|+|+|..|.|..+..+..+++...  .|                                           ..+
T Consensus        81 t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~--~~-------------------------------------------~~~  115 (214)
T 2ibg_A           81 HTYRFRILAVYSNNDNKESNTSAKFYLQPG--AA-------------------------------------------LDP  115 (214)
T ss_dssp             CEEEEEEEEEETTSCEEECCCCCCEECCCS--TT-------------------------------------------SCC
T ss_pred             CEEEEEEEEEecCCCCCCCCCcccEEeccC--cC-------------------------------------------CCC
Confidence            999999999999999988876665554321  01                                           023


Q ss_pred             CCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCC-CCeEEccCCc
Q psy12426        557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTS-GRWIKITPDP  610 (616)
Q Consensus       557 ~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~w~~~~~~~  610 (616)
                      +.+|.++.+...+.++|.|+|++|..+.++.|.+|.|.|+..+. ++|..+....
T Consensus       116 ~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~  170 (214)
T 2ibg_A          116 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEG  170 (214)
T ss_dssp             CCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEEC
T ss_pred             CCCCcccEEEEccCCeEEEEEeCCCccCCCCcceEEEEEEECCCCcceEEeeccC
Confidence            55677788888899999999999865568999999999998887 7898775543

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.74  E-value=2.3e-17  Score=146.06  Aligned_cols=124  Identities=12%  Similarity=0.169  Sum_probs=89.7

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.++..+|.|.|+|.|.|..|.....    .+.+. ...+|.+ ...+....+..|+.+.|.|.+.+.|.+.+.|++
T Consensus        63 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~----~~~l~-v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~  136 (191)
T 1epf_A           63 TLTIYNANIDDAGIYKCVVTAEDGTQSEA----TVNVK-IFQKLMF-KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH  136 (191)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEEEE----EEEEE-EECCSEE-EECCSSEECCTTSCEEECCEEECSSCCEEEEEE
T ss_pred             EEEEccCCcccCEEEEEEEEcCCCcceEE----EEEEE-eecCceE-ecCCCcEeecCCCeEEEEEEECCCCCCEEEEEE
Confidence            67888888888888888888876421111    12111 1234555 334456778899999999999999999999999


Q ss_pred             CCeeeccc--CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        253 NDITIISK--DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       253 ~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      ++..+...  .++.....+   .|.|.++...|.|.|+|.|.|..+.......+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~  188 (191)
T 1epf_A          137 KGRDVILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ  188 (191)
T ss_dssp             TTEEGGGGCCTTEEECTTS---CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEE
T ss_pred             CCEEeeccCCceEEEecCC---eEEECCCChhhCEEEEEEEEEecceeEEEEEEE
Confidence            99987543  344443333   799999999999999999999876554444443

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.73  E-value=1.1e-16  Score=153.61  Aligned_cols=234  Identities=13%  Similarity=0.109  Sum_probs=149.2

Q ss_pred             CCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEe-cC
Q psy12426        311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVN-KI  389 (616)
Q Consensus       311 ~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n-~~  389 (616)
                      .+|.+ +.+.......+.|+|.+|.......+..|.+.+.......+      ....+.+.++.++..|.++|+|.+ ..
T Consensus         5 ~pP~n-l~~~~~~~~~v~l~W~pP~~~~~~~~~~Y~v~~~~~~~~~~------~~~~~~~~~~~~~~~y~~~V~a~~~~~   77 (314)
T 3bpo_C            5 PPVTN-LSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKI------APETRRSIEVPLNERICLQVGSQCSTN   77 (314)
T ss_dssp             CCCEE-EEEEEETTTEEEEEEECCSSCCCSSCCCEEECCC--CCCEE------ESSSEEEEECCCSSCEEEEEEECC---
T ss_pred             CCCcc-eEEEeCCceEEEEEEcCCCCCCCCceEEEEEEecccCceEe------ccccEEEEEEcCCCcEEEEEEEEecCC
Confidence            45665 77777778899999998766534466788887744211111      123355677888999999999954 45


Q ss_pred             cCCCCccccCCEEcc-CCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeE--eecCCc
Q psy12426        390 GESLPLVCQSPITAK-DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKAC--IVPANI  465 (616)
Q Consensus       390 g~~~~~~~s~~~~~~-~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~--~~~~~~  465 (616)
                      |.+..+.... ..+. ....+|.+|.++.+...+.+++.++|.++... + .+..|.|+|+..+. .+..+.  ...+..
T Consensus        78 ~~g~~s~~~~-~~~~~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~~~~-~-~~~~Y~l~y~~~~~~~~~~C~~~~~~~~~  154 (314)
T 3bpo_C           78 ESEKPSILVE-KCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNT-S-PDTNYTLYYWHRSLEKIHQCENIFREGQY  154 (314)
T ss_dssp             ------CCEE-EEECCCCC-CCSSCEEEEEEEETTTEEEEEEECCC-----CCCCEEEEEEESSCSSCEECCCEEEETTE
T ss_pred             CCCCCCcCee-eeeecCCCCCCCCCEeceEEECCCCeEEEEECCCCCC-C-CCccEEEEEEeCCCCccccCcCeecCCCe
Confidence            5554432222 1222 22356678889998888899999999976543 3 37889999877653 444432  122345


Q ss_pred             cEEEcCCCC----CCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeecc
Q psy12426        466 TATSVPDLK----EGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLN  541 (616)
Q Consensus       466 ~~~~l~~L~----p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  541 (616)
                      ..+.+..+.    ..+.|.|+|.|.|..|.+..+.    ......                                   
T Consensus       155 ~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~~----~~~~~~-----------------------------------  195 (314)
T 3bpo_C          155 FGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSF----NIVPLT-----------------------------------  195 (314)
T ss_dssp             EEEEEECCC--------CCEEEEEEETTSCSCCEE----EEECSS-----------------------------------
T ss_pred             EEEEECCCCccccceeEEEEEEEEEcCCCceeccc----EEEehh-----------------------------------
Confidence            677777766    3789999999999998875332    111100                                   


Q ss_pred             ccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCCCeEEc
Q psy12426        542 EGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKI  606 (616)
Q Consensus       542 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~w~~~  606 (616)
                                 ....|++|.++++. ...+++.|+|++|.. .++.+.+|+|+|++.++.+|...
T Consensus       196 -----------~~v~P~pP~~l~~~-~~~~~l~lsW~~P~~-~~~~~l~Yev~y~~~~~~~w~~~  247 (314)
T 3bpo_C          196 -----------SRVKPDPPHIKNLS-FHNDDLYVQWENPQN-FISRCLFYEVEVNNSQTETHNVF  247 (314)
T ss_dssp             -----------SSEECCCCEEEEEE-EETTEEEEEEECCTT-CCGGGEEEEEEEEC--CCCEEEE
T ss_pred             -----------heEeeCCCCEEEEE-EcCCcEEEEEeCCCc-cCCceEEEEEEEEECCCCcceEE
Confidence                       01347899988886 788999999999864 25668999999999888889753

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.73  E-value=2.5e-15  Score=144.68  Aligned_cols=135  Identities=10%  Similarity=0.080  Sum_probs=101.1

Q ss_pred             eEEEecCCC-CCCcEEEEEEEEcCCCCcee-eEEEEE--ecCCCCCCCCccceeecC--CeEEEEEeCCCCC-CCCceEE
Q psy12426        272 TKLKVFDSK-RGDSGIYTLAVKNSWGTDKG-TAKVTV--LDIPSPPEGPLKPSNITK--SSCNLEWRAPRDD-GGTDILH  344 (616)
Q Consensus       272 ~~l~i~~l~-~~~~g~y~c~a~n~~g~~~~-~~~l~v--~~~p~~p~~~~~~~~~~~--~~~~l~W~~~~~~-~~~~i~~  344 (616)
                      ..+.|..+. ....|.|+|.|.|..|.... ...+..  ..+|.+|.+ +.+.....  ..+.|+|.+|... .+..+..
T Consensus       155 ~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~-l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~  233 (325)
T 1n26_A          155 FSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPAN-ITVTAVARNPRWLSVTWQDPHSWNSSFYRLR  233 (325)
T ss_dssp             EEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEE-EEEEECTTCTTCEEEEEECCTTCCCSSSCEE
T ss_pred             EEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcc-eEEEEecCCCCEEEEEECCCCccCCCcEeEE
Confidence            356676665 56789999999999987532 222222  245667765 55555543  5899999987653 3456899


Q ss_pred             EEEEEEeCCCCCEEEccc-cccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCC
Q psy12426        345 YVVEKMDMETGRWVPMGD-VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF  407 (616)
Q Consensus       345 y~v~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~  407 (616)
                      |.|+|+..+...|..... .....+.+.+|.+++.|.|+|+|.|..|.|.++.++..+...+..
T Consensus       234 Y~V~yr~~~~~~W~~~~~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~~~  297 (325)
T 1n26_A          234 FELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWT  297 (325)
T ss_dssp             EEEEEEETTCSCCEEEECGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEECCCC
T ss_pred             EEEEEEeCCCCCCEEEcccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccceecCC
Confidence            999999887778876542 345688999999999999999999999999999999888776433

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.72  E-value=1.1e-16  Score=144.45  Aligned_cols=132  Identities=17%  Similarity=0.207  Sum_probs=93.3

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEE-EeeecCceeEE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDIN-VIGEPIPTKEW  250 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~-~~~~p~~~~~W  250 (616)
                      ..|.|.+++..|.|.|+|.|.|..|....+ ....+.+.   .+|.+. ..+....+..|+.+.|.|. +.+.|.+.+.|
T Consensus        65 ~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~-~~~~l~V~---~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W  139 (212)
T 1f97_A           65 SGITFSSVTRKDNGEYTCMVSEEGGQNYGE-VSIHLTVL---VPPSKP-TISVPSSVTIGNRAVLTCSEHDGSPPSEYSW  139 (212)
T ss_dssp             TEEEESCCCGGGCEEEEEEEEETTSSSEEE-EEEEEEEE---BCCCCC-EEECCSEEETTSCEEEEEECSCCBSCCEEEE
T ss_pred             eeEEEcccCcccCeEEEEEEEccCCCcccE-EEEEEEEE---cCCCCc-ccCCccccCCCCeEEEEEEcccCcCCCEEEE
Confidence            489999999999999999999987722111 11222222   233332 1123457889999999999 78999999999


Q ss_pred             EECCe-eecccCcE-------EEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc--eeeEEEEEec
Q psy12426        251 LCNDI-TIISKDRF-------KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD--KGTAKVTVLD  308 (616)
Q Consensus       251 ~~~~~-~~~~~~~~-------~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~--~~~~~l~v~~  308 (616)
                      ++++. .+......       ..........|.|.++...|.|.|+|.|.|..|..  +..+.+.+..
T Consensus       140 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          140 FKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             EETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             EeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            99998 76543221       12223344589999999999999999999999987  5566666654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.72  E-value=1.1e-16  Score=142.09  Aligned_cols=120  Identities=11%  Similarity=0.026  Sum_probs=80.8

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.+++..|.|.|+|.|.|..|....+. ...+.+.....+|.+... +. ..+.+|+.++|.|.+.+. .+.+.|++
T Consensus        59 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~-~~~l~V~~~~~~p~~~~~-~~-~~v~~G~~v~L~C~~~~~-~~~~~w~k  134 (196)
T 3p2t_A           59 RFSIPSMTEDYAGRYRCYYRSPVGWSQPSD-PLELVMTGAYSKPTLSAL-PS-PLVTSGKSVTLLCQSRSP-MDTFLLCK  134 (196)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEBCCCC-CEEEEEECSSCCCEEEEE-SC-SEECTTCCEEEEEEEEEE-EEEEEEEE
T ss_pred             EEEeccCCcccCceEEEEEeCCCcccCCCc-cEEEEecCCCCCCEEEeC-Cc-ceecCCCeEEEEEecCCC-CCEEEEEe
Confidence            567777778888888888887766322221 122333333345555322 22 267899999999999885 46899999


Q ss_pred             CCeeecccCcE-EEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        253 NDITIISKDRF-KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       253 ~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      ++..+...... ..........|.|.+++..|.|.|+|.|.|..+
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          135 ERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             TTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             CCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            99876543322 111222345899999999999999999999765

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.72  E-value=6.7e-19  Score=177.72  Aligned_cols=268  Identities=6%  Similarity=-0.067  Sum_probs=148.9

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeec--CCeeeeeeCC--eeeeeccceEEEeecCCC-------CCceeEeeeccCCccc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEP--VPHVDWRAGG--NPLNLRPIWEKCAQTEGD-------TPKGKVLDLIEGNHPI   74 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~-------~~~~~v~~~~~~~~p~   74 (616)
                      ++.+..+.|.+|++|.|.|.+.|.+  .+.|.|+|++  ..+..-     ...+..+       ...+++...       
T Consensus         3 l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~R~~~~-------   70 (434)
T 1igy_B            3 LQESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWI-----GYINPSSVYTNYNQRFKDKATLT-------   70 (434)
T ss_dssp             EECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEE-----EECCSSSCCCCCCGGGTTTEECC-------
T ss_pred             eECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEE-----EEEccCCCceecCccccccEEEE-------
Confidence            3457888999999999999999874  6789999974  322100     0000000       000111100       


Q ss_pred             eeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCc-------ceeecCCC-------ceee----eecC
Q psy12426         75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP-------HIARAKKG-------KCYH----LVGT  136 (616)
Q Consensus        75 w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~-------~~~~~~~p-------~~~~----~~g~  136 (616)
                          .........|.|.+++..|+|.|+|.|.|..+.........+       ..+....|       ..+.    ..|.
T Consensus        71 ----~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~  146 (434)
T 1igy_B           71 ----RDRSSNTANIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY  146 (434)
T ss_dssp             ----BCGGGCBBCEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEE
T ss_pred             ----EECCCCEEEEEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeee
Confidence                000122458999999999999999999985432221100000       00110011       1111    1154


Q ss_pred             -ccc-ccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc---
Q psy12426        137 -LLK-DSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA---  211 (616)
Q Consensus       137 -p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~---  211 (616)
                       |.+ .+.|++  ++....  ............-.....|.|.++..+| |.|+|.|.|..|.....     ..+..   
T Consensus       147 ~P~p~~v~W~k--~~~~~~--~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~-----~~~~~~~~  216 (434)
T 1igy_B          147 FPEPVTVTWNS--GSLSSG--VHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVD-----KKIVPRDC  216 (434)
T ss_dssp             BSSCCEEEETT--TTBCSS--EEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEE-----EECCCCCC
T ss_pred             cCCCeEEEEee--CCcCCC--eEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccce-----eeccCCCC
Confidence             555 788887  422110  0000000000000001358889999888 99999999988763211     11100   


Q ss_pred             --------ccCCCceeccCCcceE-EEcCCeEEEEEEEeeec----CceeEEEECCeeecccCcEEEE--ecC---CceE
Q psy12426        212 --------KKVSPYINRDQLSDIK-VRAGSNFEFDINVIGEP----IPTKEWLCNDITIISKDRFKIV--NDD---KSTK  273 (616)
Q Consensus       212 --------~~~~P~~~~~~~~~~~-v~~g~~~~l~c~~~~~p----~~~~~W~~~~~~~~~~~~~~~~--~~~---~~~~  273 (616)
                              ....|.+....+.... +..|+.+.|.|.+.+.+    .+.+.|++++..+.........  ..+   ....
T Consensus       217 ~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (434)
T 1igy_B          217 GCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSA  296 (434)
T ss_dssp             CCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCC
T ss_pred             CCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEE
Confidence                    0111333222222221 77899999999999884    3589999998776432211110  111   1346


Q ss_pred             EEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        274 LKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       274 l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      |.|.++...|.|.|+|.|.|..|...
T Consensus       297 L~i~~~~~~d~G~Y~C~a~n~~~~~~  322 (434)
T 1igy_B          297 LPIMHQDWLNGKEFKCRVNSAAFPAP  322 (434)
T ss_dssp             EECCHHHHHHTCCCBCCBCCSSCSSC
T ss_pred             EEECHHHccCCCcEEEEEECCCCCCc
Confidence            89999999999999999999888653

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.71  E-value=8.5e-17  Score=143.40  Aligned_cols=170  Identities=8%  Similarity=-0.015  Sum_probs=115.1

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCe-eeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPH-VDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      |.|... |.+..|.+|+.|.|.|.+.|.|.|. |+|+|+|..+..                                   
T Consensus         8 p~i~~~-p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~-----------------------------------   51 (204)
T 3sgj_C            8 AVVFLE-PQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISS-----------------------------------   51 (204)
T ss_dssp             CEEEEE-SCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESC-----------------------------------
T ss_pred             CeEEEc-CCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEccc-----------------------------------
Confidence            555544 6668899999999999999999886 999999987651                                   


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCcccccEEEEeeccCcccccccCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPI  160 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~  160 (616)
                         ....|.|.++...|+|.|+|.|.|...    +                       ..+                   
T Consensus        52 ---~~~~L~i~~v~~~D~G~Y~C~a~n~~~----s-----------------------~~~-------------------   82 (204)
T 3sgj_C           52 ---QASSYFIDAATVDDSGEYRCQTQLSTL----S-----------------------DPV-------------------   82 (204)
T ss_dssp             ---CSSEEEESSCCGGGCEEEEEEETTSBC----C-----------------------CCE-------------------
T ss_pred             ---CccEEEEecccccCCEEEEEEeCCCcc----c-----------------------ccE-------------------
Confidence               125678888888888888888764100    0                       000                   


Q ss_pred             ceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE
Q psy12426        161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV  240 (616)
Q Consensus       161 ~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~  240 (616)
                                  .+.+..                                    +|.+ ... ....+.+|+.+.|.|.+
T Consensus        83 ------------~l~V~~------------------------------------~p~~-~~~-~~~~v~~G~~v~L~C~~  112 (204)
T 3sgj_C           83 ------------QLEVHI------------------------------------GWLL-LQA-PRWVFKEEDPIHLRCHS  112 (204)
T ss_dssp             ------------EEEEEC------------------------------------SSEE-EEC-SCSEEETTCCEEEEEEE
T ss_pred             ------------EEEEec------------------------------------CceE-ecC-CceeEeCCCcEEEEEEe
Confidence                        111110                                    0111 000 11457789999999999


Q ss_pred             eee-cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC-CCCceeeEEEEEecCCCCCC
Q psy12426        241 IGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS-WGTDKGTAKVTVLDIPSPPE  314 (616)
Q Consensus       241 ~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~-~g~~~~~~~l~v~~~p~~p~  314 (616)
                      .+. |.+.+.|++++..+...     .   ....|.|.++...|.|.|+|.|.|. .+..+..+.+.|..+|..|.
T Consensus       113 ~~~~p~~~v~W~k~g~~~~~~-----~---~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P~  180 (204)
T 3sgj_C          113 WKNTALHKVTYLQNGKGRKYF-----H---HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST  180 (204)
T ss_dssp             GGGCCCEEEEEEETTEEEEEE-----E---ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC------
T ss_pred             cCCCCCceEEEEECCcEeecc-----c---CCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCCc
Confidence            665 56899999999875321     1   1238999999999999999999994 44556777888887765554

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.71  E-value=7e-17  Score=147.74  Aligned_cols=139  Identities=19%  Similarity=0.321  Sum_probs=110.9

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .+|.+|.++.+...+.+++.|+|.+|   + +.+.+|.|+|+..+. .+.. .........++|.+|.|++.|.|+|+|.
T Consensus         4 ~p~~~P~~l~~~~~~~~si~l~W~~p---~-g~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   78 (234)
T 3f7q_A            4 MDLGAPQNPNAKAAGSRKIHFNWLPP---S-GKPMGYRVKYWIQGDSESEA-HLLDSKVPSVELTNLYPYCDYEMKVCAY   78 (234)
T ss_dssp             -CCCCCEEEEEEECSSSCEEEEEECC---S-SCCCEEEEEEEETTSCGGGC-EEEEESSSEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCcceEEEEcCCCEEEEEEECC---C-CccceEEEEEEECCCCccce-EEEcCCccEEEECCCCCCCEEEEEEEEE
Confidence            56788999999999999999999986   2 368999999987765 2221 2233567899999999999999999999


Q ss_pred             cCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEE
Q psy12426        487 NKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEAT  566 (616)
Q Consensus       487 n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~  566 (616)
                      |..|.|++|......+.                                                  ...|.+|.++++.
T Consensus        79 n~~G~g~~s~~~~~~T~--------------------------------------------------~~~P~~P~~l~~~  108 (234)
T 3f7q_A           79 GAQGEGPYSSLVSCRTH--------------------------------------------------QEVPSEPGRLAFN  108 (234)
T ss_dssp             ETTEECCCCCCEEEECC--------------------------------------------------CCCCCCCCCCEEE
T ss_pred             eCCCcCCCCCeEEEEcC--------------------------------------------------CCCCCCCCccEEE
Confidence            99999988764432221                                                  2457778899999


Q ss_pred             eecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCCC
Q psy12426        567 DVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGR  602 (616)
Q Consensus       567 ~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~  602 (616)
                      ..+.++|.|+|++|... +|.|.+|+|.|+..++.+
T Consensus       109 ~~~~~sv~l~W~~p~~~-~g~i~~Y~v~~~~~~~~~  143 (234)
T 3f7q_A          109 VVSSTVTQLSWAEPAET-NGEITAYEVCYGLVNDDN  143 (234)
T ss_dssp             ECSSSCEEEECCCCSCC-SSCCCEEEEEEEEBCTTS
T ss_pred             EecCCEEEEEEcCCCCC-CCceeEEEEEEEECCCCC
Confidence            99999999999998653 789999999999776543

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.71  E-value=5.9e-17  Score=145.77  Aligned_cols=142  Identities=18%  Similarity=0.193  Sum_probs=108.1

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCC---CCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKD---GGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~---~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      .+|.+|.++.+...+.+++.|+|.+|..+   ....+.+|.|+|+..+. .+.. .........++|.+|.|++.|.|+|
T Consensus         3 ~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V   81 (211)
T 3p4l_A            3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKY-KNANATTLSYLVTGLKPNTLYEFSV   81 (211)
T ss_dssp             CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC---CCC-EEEEESSSEEEECSCCTTCEEEEEE
T ss_pred             CCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCCcceE-EEeCCCceEEEecCcCCCCEEEEEE
Confidence            35678889999999999999999987532   24568999999998765 2222 2234557899999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCC-CCCCC
Q psy12426        484 IAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVP-GKPSK  562 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~  562 (616)
                      +|.|..|.|++|......+..                                                  ..| .+|.+
T Consensus        82 ~A~n~~g~~~~S~~~~~~t~~--------------------------------------------------~~P~~~P~~  111 (211)
T 3p4l_A           82 MVTKGRRSSTWSMTAHGTTFE--------------------------------------------------LVPTSPPKD  111 (211)
T ss_dssp             EEEETTEECCCCCCEEEECCC--------------------------------------------------CCCCSCCEE
T ss_pred             EEEcCCCCCccceeEeeeccc--------------------------------------------------CCCCCCCcc
Confidence            999999999887654332221                                                  223 37777


Q ss_pred             CeEEee--cCCcEEEEeeCCCCCCCCceeeeEEEEeecCCC
Q psy12426        563 PEATDV--DKDHIKIKWQQPISNGGSAIKGYEVERRERTSG  601 (616)
Q Consensus       563 ~~~~~~--~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~  601 (616)
                      +++...  +.++|.|+|++|.. .||.|.+|+|.|+..++.
T Consensus       112 ~~~~~~~~s~~sv~l~W~~p~~-~~g~i~~Y~v~~~~~~~~  151 (211)
T 3p4l_A          112 VTVVSKEGKPKTIIVNWQPPSE-ANGKITGYIIYYSTDVNA  151 (211)
T ss_dssp             EEEEEETTEEEEEEEEEECCTT-CCSCCCEEEEEEESCTTS
T ss_pred             eEEEecCCCCCEEEEEECCCCC-CCCCEEEEEEEEEECCCC
Confidence            777766  47899999998864 478999999999976654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.71  E-value=6.1e-17  Score=143.77  Aligned_cols=120  Identities=11%  Similarity=-0.035  Sum_probs=71.3

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.+++..|.|.|+|.|.|..|....+. ...+.+.....+|.+... + ...+.+|+.+.|.|.+.+.| +.+.|++
T Consensus        59 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~-~~~l~V~~~~~~p~i~~~-~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k  134 (196)
T 2d3v_A           59 RFSIPSMTEHHAGRYRCYYYSPAGWSEPSD-PLELVVTGFYNKPTLSAL-P-SPVVTSGENVTLQCGSRLRF-DRFILTE  134 (196)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEECBCCC-CEEEEEECSSCCCEEEC-------------CEEEEEESSCC-SEEEEEE
T ss_pred             EEEeccCChhHCeEEEEEEeCCCCcCCcCc-cEEEEecCCCCCCeEEcc-C-CccccCCCcEEEEEEcCCCC-CEEEEEc
Confidence            567777777888888888877665433221 122333332335555322 2 24688999999999999998 8999999


Q ss_pred             CCeeecccCcE-EEEe-cCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        253 NDITIISKDRF-KIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       253 ~~~~~~~~~~~-~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      ++..+...... .... ......|.|.+++..|.|.|+|.|.|..+
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          135 EGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             C---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            99876432111 1111 12236899999999999999999999754

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.71  E-value=9.3e-17  Score=163.19  Aligned_cols=268  Identities=10%  Similarity=0.006  Sum_probs=141.9

Q ss_pred             CCCceEecCCCeEEEEEEEeeec--CCeeeeeeC--CeeeeeccceEEEe---ecCCCCCceeEeeeccCCccceeeccc
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEP--VPHVDWRAG--GNPLNLRPIWEKCA---QTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~--~~~l~~~G~Y~C~a---~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      .+..+.+.+|++|.|.|.+.|.|  .+.|.|+|+  |+.+..- .|.-..   .+......+++...           ..
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~-~~~~~~~~~~~~~~~~~~R~~~~-----------~~   73 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWM-GWINPYNGNKEFSAKFQDRVTFT-----------AD   73 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEE-EEEETTTTEEEECTTTTTTEEEE-----------EE
T ss_pred             cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEE-EEEecCCCceecCccccCceEEE-----------Ee
Confidence            46778999999999999999887  778999995  3222100 000000   00000001111100           00


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCC--------C--CCCCCCCcceeec---CCCc--------------eee-
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP--------G--EPSDPTAPHIARA---KKGK--------------CYH-  132 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~--------~--~~~~~~~~~~~~~---~~p~--------------~~~-  132 (616)
                      .......|.|.+++..|+|.|+|.|.|..|.        .  .......+ .+..   ..|.              .+. 
T Consensus        74 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l-~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  152 (457)
T 1hzh_H           74 TSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTV-IVSSASTKGPSVFPLAPSSKSTSGGTAAL  152 (457)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEE-EECSCCCBCCEEEEECCCSCCCTTCCEEE
T ss_pred             CCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEE-EecCCCCCCCeEEecCccccccCCCcEEE
Confidence            0122458999999999999999999998761        0  00000000 1110   1111              111 


Q ss_pred             ---eecC-cc-cccEEEEeeccCcccccccCCCceEecccCCC----CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCC
Q psy12426        133 ---LVGT-LL-KDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD----TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP  203 (616)
Q Consensus       133 ---~~g~-p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~  203 (616)
                         ..|. |. +.+.|++  ++..+.    ........ ..++    ...|.|.++..+| |.|+|.|.|..+.....  
T Consensus       153 ~C~~~g~~P~~~~v~W~k--~~~~~~----~~~~~~~~-~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~--  222 (457)
T 1hzh_H          153 GCLVKDYFPEPVTVSWNS--GALTSG----VHTFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD--  222 (457)
T ss_dssp             EEEEESBBSCCCEEEETT--TTBCTT----EEEEEEEE-CTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEE--
T ss_pred             EEEEeEEeCCCeEEEEEe--CCEecc----ceEcCceE-CCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCccee--
Confidence               1255 53 6788887  421110    00011110 1111    1268899999989 99999999976642110  


Q ss_pred             CCCEEecc--------------ccCCCceeccCCcce-EEEcCCeEEEEEEEeeecCc----eeEEEECCeeecccCcEE
Q psy12426        204 TAPHIARA--------------KKVSPYINRDQLSDI-KVRAGSNFEFDINVIGEPIP----TKEWLCNDITIISKDRFK  264 (616)
Q Consensus       204 ~~~~~~~~--------------~~~~P~~~~~~~~~~-~v~~g~~~~l~c~~~~~p~~----~~~W~~~~~~~~~~~~~~  264 (616)
                       ..+....              ...+|.+....+... .+..|+.+.|.|.+.+.+.+    .+.|++++..+.......
T Consensus       223 -~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~  301 (457)
T 1hzh_H          223 -KKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP  301 (457)
T ss_dssp             -EECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEE
T ss_pred             -EEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCcccccccccc
Confidence             0000000              012344322222222 25679999999999998653    999999998775332111


Q ss_pred             -EEecCCceEEEec---CCCCCC---cEEEEEEEEcCCCCceee
Q psy12426        265 -IVNDDKSTKLKVF---DSKRGD---SGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       265 -~~~~~~~~~l~i~---~l~~~~---~g~y~c~a~n~~g~~~~~  301 (616)
                       ....++  .+.+.   .+...|   .|.|+|.|.|..+.....
T Consensus       302 ~~~~~~g--~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~  343 (457)
T 1hzh_H          302 REEQYNS--TYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIE  343 (457)
T ss_dssp             EEECTTS--CEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEE
T ss_pred             ceecCCC--cEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcce
Confidence             111111  22222   234555   899999999875554333

>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*

Probab=99.70  E-value=1.4e-15  Score=145.89  Aligned_cols=222  Identities=10%  Similarity=0.027  Sum_probs=142.5

Q ss_pred             EEecCCCCCCcEEEEEEEEc---CCCCceeeEEEEEe----cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEE
Q psy12426        274 LKVFDSKRGDSGIYTLAVKN---SWGTDKGTAKVTVL----DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYV  346 (616)
Q Consensus       274 l~i~~l~~~~~g~y~c~a~n---~~g~~~~~~~l~v~----~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~  346 (616)
                      ..+..+.+.+.|.+++.|.+   ..|..+......+.    .+|.+|.+ +.+.......+.++|.++...  ..+..|.
T Consensus        55 ~~~~~~~~~~~y~~~V~a~~~~~~~g~~s~~~~~~~~~~~~~pp~~P~~-l~c~~~~~~~~~c~W~~~~~~--~~~~~Y~  131 (314)
T 3bpo_C           55 RRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTE-LQCIWHNLSYMKCSWLPGRNT--SPDTNYT  131 (314)
T ss_dssp             EEEEECCCSSCEEEEEEECC---------CCEEEEECCCCC-CCSSCEE-EEEEEETTTEEEEEEECCC-----CCCCEE
T ss_pred             EEEEEEcCCCcEEEEEEEEecCCCCCCCCcCeeeeeecCCCCCCCCCEe-ceEEECCCCeEEEEECCCCCC--CCCccEE
Confidence            44566777888999999843   33433332222221    23344444 566666788999999977554  2478899


Q ss_pred             EEEEeCCCCCEEEccc----cccceEEecccc----CCCeEEEEEEEEecCcCCCCccccCCEEcc-CCCCCCCCCCCCE
Q psy12426        347 VEKMDMETGRWVPMGD----VSGTYTRAENLI----EGHDYNFRVKAVNKIGESLPLVCQSPITAK-DPFGRPDRPGQPT  417 (616)
Q Consensus       347 v~~~~~~~~~~~~~~~----~~~~~~~i~~L~----~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~-~~~~~p~~p~~~~  417 (616)
                      |.++..+...+..+..    .....+.+..+.    ..+.|.|+|.|.|..|.+..+    ...+. .....|++|.+++
T Consensus       132 l~y~~~~~~~~~~C~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~----~~~~~~~~~v~P~pP~~l~  207 (314)
T 3bpo_C          132 LYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPS----FNIVPLTSRVKPDPPHIKN  207 (314)
T ss_dssp             EEEEESSCSSCEECCCEEEETTEEEEEEECCC--------CCEEEEEEETTSCSCCE----EEEECSSSSEECCCCEEEE
T ss_pred             EEEEeCCCCccccCcCeecCCCeEEEEECCCCccccceeEEEEEEEEEcCCCceecc----cEEEehhheEeeCCCCEEE
Confidence            9987655555555543    223556666655    367899999999998876532    12222 2335689999999


Q ss_pred             EEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEe------------ecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        418 VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACI------------VPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       418 ~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~------------~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      +. ...+++.|+|.+|...++ .+..|+|+|+..++ .|.....            .......++|.+|.|++.|.|+|+
T Consensus       208 ~~-~~~~~l~lsW~~P~~~~~-~~l~Yev~y~~~~~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qVr  285 (314)
T 3bpo_C          208 LS-FHNDDLYVQWENPQNFIS-RCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIR  285 (314)
T ss_dssp             EE-EETTEEEEEEECCTTCCG-GGEEEEEEEEC--CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEEE
T ss_pred             EE-EcCCcEEEEEeCCCccCC-ceEEEEEEEEECCCCcceEEecccccccccccccccCCceEEEEccCCCCCEEEEEEE
Confidence            87 778899999998864333 37899999998776 6754322            124567899999999999999999


Q ss_pred             EEcCC----CCCCCCCCCCCEEec
Q psy12426        485 AVNKG----GPGEPSKASAPVTCK  504 (616)
Q Consensus       485 a~n~~----G~g~~s~~~~~~~~~  504 (616)
                      |.+..    +.|.+|..+......
T Consensus       286 a~~~~~~~~~~g~WS~WS~~~~~~  309 (314)
T 3bpo_C          286 VKTNKLCYEDDKLWSNWSQEMSIG  309 (314)
T ss_dssp             EEECTTTSCCCCCCCCCCCCEEES
T ss_pred             eeecccccCCCCeeCCCCCCeEec
Confidence            99863    355566666655543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.70  E-value=5.9e-17  Score=157.88  Aligned_cols=271  Identities=12%  Similarity=0.020  Sum_probs=141.8

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeec--CCeeeeeeC--CeeeeeccceEEEe----ecCCCCCceeEeeeccCCccceee
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEP--VPHVDWRAG--GNPLNLRPIWEKCA----QTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~--~~~l~~~G~Y~C~a----~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +..|..+.+.+|++|.|.|.+.|.+  .+.|.|+|+  ++.+..-. |. ..    .+......+++..           
T Consensus         4 l~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~-~~-~~~~~~~~~~~~~~~R~~~-----------   70 (344)
T 1za6_B            4 LVQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIG-YF-SPGNDDFKYNERFKGKATL-----------   70 (344)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEE-EE-ETTTTEEEECTTTBTTEEE-----------
T ss_pred             eeCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEE-EE-ecCCCceEECcccCCcEEE-----------
Confidence            3457788999999999999999874  678999997  44332100 00 00    0000000011110           


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCC-------cceeecCCC-------ceee----eecC-cc
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA-------PHIARAKKG-------KCYH----LVGT-LL  138 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~-------~~~~~~~~p-------~~~~----~~g~-p~  138 (616)
                      .........+|.|.+++..|+|.|+|.|.|..+.........       ...+....|       ..+.    ..|. |.
T Consensus        71 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  150 (344)
T 1za6_B           71 TADTSASTAYVELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  150 (344)
T ss_dssp             EEETTTTEEEEEECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSS
T ss_pred             EEecCCCEEEEEECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECC
Confidence            000012345899999999999999999998543221110000       001111111       1112    1254 54


Q ss_pred             -cccEEEEeeccCcccccccCCCceEecccCC---CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCC-CCCCE------
Q psy12426        139 -KDSIYEQLKRSGLFDQFHLCPIWEKCAQTEG---DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD-PTAPH------  207 (616)
Q Consensus       139 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~-~~~~~------  207 (616)
                       +.+.|++  ++..+.  ..  .........+   ....|.|.++..+| |.|+|.|.|..|...... ....+      
T Consensus       151 ~~~v~W~k--~g~~~~--~~--~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~  223 (344)
T 1za6_B          151 PVTVSWNS--GALTSG--VH--TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHT  223 (344)
T ss_dssp             CCCEEETT--TTBCTT--EE--ECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC-----
T ss_pred             CeEEEEec--CCccCc--ee--ECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccc
Confidence             6899987  422111  00  0000000001   01268888888877 999999999877421100 00000      


Q ss_pred             --------E---eccccCCCceeccCCcceEEEcCCeEEEEEEEeee-c-CceeEEEECCeeecccCcEEE--EecCC--
Q psy12426        208 --------I---ARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-P-IPTKEWLCNDITIISKDRFKI--VNDDK--  270 (616)
Q Consensus       208 --------~---~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p-~~~~~W~~~~~~~~~~~~~~~--~~~~~--  270 (616)
                              .   ......+|.+....+.... ..|..+.|.|.+.|. | .+.+.|++++..+........  ..++.  
T Consensus       224 ~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~  302 (344)
T 1za6_B          224 CPPCGGGSSGGGSGGQPREPQVYTLPPSRDE-LTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFF  302 (344)
T ss_dssp             ---------------CCBCCEEEEECCCGGG-GGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEE
T ss_pred             cCCCCCCccccccCCCCcCCEEEEeCCChHh-ccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEE
Confidence                    0   0112345655433222222 246679999999996 3 358999999987653322111  11121  


Q ss_pred             -ceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        271 -STKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       271 -~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                       ...|.|......|.|.|+|.|.|....
T Consensus       303 ~~s~l~i~~~~~~~~g~YtC~a~~~~l~  330 (344)
T 1za6_B          303 LYSKLTVDKSRWQQGNVFSCSVMHEALH  330 (344)
T ss_dssp             EEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred             EEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence             123555555555699999999986543

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.70  E-value=1.3e-16  Score=143.78  Aligned_cols=136  Identities=14%  Similarity=0.026  Sum_probs=83.2

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC--ceeEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI--PTKEW  250 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~--~~~~W  250 (616)
                      .|.|.+++.+|.|.|+|.|.|..+. ..+. ...+.+.. ..+|.+....+..+.+..|+.+.|.|.+.+.|.  +.+.|
T Consensus        65 ~l~I~~v~~~D~G~Y~C~a~n~~~~-~~s~-~~~l~v~~-~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W  141 (213)
T 2x1w_L           65 GFTIPSYMISYAGMVFCEAKINDES-YQSI-MYIVVVVG-YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNW  141 (213)
T ss_dssp             EEEEEGGGTTTCSEEEEEEC----C-EECC-CEEEEECB-CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEE
T ss_pred             cEEEccCChhcCceEEEEEEECCee-EEEE-EEEEEEeC-CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEE
Confidence            3556666666666666666553221 1110 01121111 122333344445568999999999999998654  47999


Q ss_pred             EECCeeecccCc-EEEEe-------cCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy12426        251 LCNDITIISKDR-FKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS  311 (616)
Q Consensus       251 ~~~~~~~~~~~~-~~~~~-------~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~  311 (616)
                      ++++..+..... .....       ......|.|.+++..|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus       142 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  210 (213)
T 2x1w_L          142 EYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI  210 (213)
T ss_dssp             ECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred             EecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence            998876432111 10100       11134799999999999999999999999998899999987653

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.70  E-value=1.6e-16  Score=143.04  Aligned_cols=116  Identities=10%  Similarity=0.023  Sum_probs=76.4

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.+++..|.|.|+|.|.|..|....+. ...+.+.....+|.+... + ...+.+|+.++|.|.+.+.+.+.+.|+|
T Consensus        65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~-~~~l~V~~~~~~P~i~~~-p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k  141 (218)
T 1uct_A           65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSD-TLELVVTGLYGKPFLSAD-R-GLVLMPGENISLTCSSAHIPFDRFSLAK  141 (218)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEEECC-CEEEEEECSSCCCEEEES-S-CSEECTTCCCEEEEECSSSCCSEEEEEE
T ss_pred             EEEEcccccccCEEEEEEEEcCCCceeecC-CEEEEEcCcccCCEEEeC-C-CCccCCCCCEEEEEeCCCCCCCEEEEEE
Confidence            455666666666666666666544222111 112222222344555322 2 3467899999999977788888999999


Q ss_pred             CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      ++..+...  .  ........|.|.+++..|+|.|+|.|.|..
T Consensus       142 ~g~~~~~~--~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          142 EGELSLPQ--H--QSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             TTCSSCCS--E--EECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCCccccc--c--cCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            99876431  1  123445699999999999999999999864

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.70  E-value=2.9e-17  Score=166.32  Aligned_cols=241  Identities=12%  Similarity=0.049  Sum_probs=141.2

Q ss_pred             ecCCCeEEEEEEEeee-cCC-eeeeeeCCeeeee--------ccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426         14 LSAGTTLKFDANIIGE-PVP-HVDWRAGGNPLNL--------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus        14 v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~l~~--------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      +.+|+.+.|.|.+.|. |.| .|+|+|++..+..        .|.|.+.                               
T Consensus       135 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------  183 (444)
T 1igt_B          135 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLS-------------------------------  183 (444)
T ss_dssp             CCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEE-------------------------------
T ss_pred             CCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEE-------------------------------
Confidence            4799999999999885 877 9999999876321        2444433                               


Q ss_pred             CCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCC---------------------CcceeecCCCc-----------ee
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT---------------------APHIARAKKGK-----------CY  131 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~---------------------~~~~~~~~~p~-----------~~  131 (616)
                        ..|.|.++...| |.|.|.|.|..|........                     ....+...+|.           .+
T Consensus       184 --s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L  260 (444)
T 1igt_B          184 --SSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIV  260 (444)
T ss_dssp             --EEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEE
T ss_pred             --EEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEE
Confidence              367888888888 99999999988753110000                     01111111221           11


Q ss_pred             e--eecCc----ccccEEEEeeccCcccccccCCCceEe-cccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCC
Q psy12426        132 H--LVGTL----LKDSIYEQLKRSGLFDQFHLCPIWEKC-AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT  204 (616)
Q Consensus       132 ~--~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~  204 (616)
                      .  ..|.+    ...++|++  +++.+... ........ .........|.|.++..+|.|.|+|.|.|..|.....   
T Consensus       261 ~C~~~g~~~~p~~~~v~W~k--~~~~~~~~-~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~---  334 (444)
T 1igt_B          261 TCVVVDVSEDDPDVQISWFV--NNVEVHTA-QTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIE---  334 (444)
T ss_dssp             EEEEEEECTTCCCCEEEEEE--TTEECSST-TCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEE---
T ss_pred             EEEEeecccCCCCeEEEEEE--CCccccCc-ccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceE---
Confidence            1  22552    35899998  54332200 00000000 0000123479999999999999999999988764211   


Q ss_pred             CCEEe-ccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCc-eeEEEECCeeecccCcEEE--EecCC---ceEEEe
Q psy12426        205 APHIA-RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-TKEWLCNDITIISKDRFKI--VNDDK---STKLKV  276 (616)
Q Consensus       205 ~~~~~-~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~-~~~W~~~~~~~~~~~~~~~--~~~~~---~~~l~i  276 (616)
                      ..+.. .....+|.+....+....+ .+..+.|.|.+.|. |.+ .+.|++++..+........  ..++.   .+.|.|
T Consensus       335 ~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i  413 (444)
T 1igt_B          335 RTISKPKGSVRAPQVYVLPPPEEEM-TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRV  413 (444)
T ss_dssp             EEEECCCCCCBCCEEEEECCCGGGT-TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEE
T ss_pred             EEEeccCCCCCCCEEEEeCCChHHc-cCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEE
Confidence            11211 1234567664332222222 34459999999984 555 8999999988743211111  11121   124556


Q ss_pred             cCCCCCCcEEEEEEEEcCC
Q psy12426        277 FDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       277 ~~l~~~~~g~y~c~a~n~~  295 (616)
                      ......|.|.|+|.|.|..
T Consensus       414 ~~~~~~d~g~YtC~a~n~~  432 (444)
T 1igt_B          414 EKKNWVERNSYSCSVVHEG  432 (444)
T ss_dssp             EHHHHHTCCCEEEEEECTT
T ss_pred             ChHHhcCCCeEEEEEECCC
Confidence            5555567899999999864

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.69  E-value=3.4e-16  Score=136.10  Aligned_cols=165  Identities=8%  Similarity=0.004  Sum_probs=114.0

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCe-eeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPH-VDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +|.|... |..+.+.+|+.|.|.|.+.|.|.|. ++|+|+|..+..                                  
T Consensus         7 ~p~i~~~-p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~----------------------------------   51 (175)
T 1fnl_A            7 KAVVFLE-PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------------------------------   51 (175)
T ss_dssp             CCEEEEE-SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------------------------------
T ss_pred             CCEEEEc-CCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC----------------------------------
Confidence            3566644 7778899999999999999999887 889999987651                                  


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCcccccEEEEeeccCcccccccCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCP  159 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  159 (616)
                          ....|.|.++...|.|.|+|.|.|..+    +                       ..+                  
T Consensus        52 ----~~~~L~i~~~~~~d~G~Y~C~~~n~~~----s-----------------------~~~------------------   82 (175)
T 1fnl_A           52 ----QASSYFIDAATVNDSGEYRCQTNLSTL----S-----------------------DPV------------------   82 (175)
T ss_dssp             ----SCSEEEESSCCGGGCEEEEEECSSSCC----C-----------------------CCE------------------
T ss_pred             ----CceEEEEeCCCcccCEEEEEEeeCCcc----c-----------------------ccE------------------
Confidence                134677888888888888888764111    0                       000                  


Q ss_pred             CceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEE
Q psy12426        160 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDIN  239 (616)
Q Consensus       160 ~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~  239 (616)
                                   .+.+.                                    .+|.+ .. .....+.+|+.+.|.|.
T Consensus        83 -------------~l~V~------------------------------------~~~~~-~~-~~~~~~~~g~~~~l~C~  111 (175)
T 1fnl_A           83 -------------QLEVH------------------------------------IGWLL-LQ-APRWVFKEEDPIHLRCH  111 (175)
T ss_dssp             -------------EEEEE------------------------------------CSSEE-EE-CSCSEEETTCCEEEEEE
T ss_pred             -------------EEEEe------------------------------------CCCce-ee-CCCceecCCCCEEEEEE
Confidence                         11111                                    00000 00 01245778999999999


Q ss_pred             EeeecCc-eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC-ceeeEEEEEec
Q psy12426        240 VIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKGTAKVTVLD  308 (616)
Q Consensus       240 ~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~l~v~~  308 (616)
                      +.+.+.+ .+.|++++..+...        .....|.|.++...|.|.|+|.|.|..|. .+..+.|.|..
T Consensus       112 ~~~~~~~~~~~W~k~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          112 SWKNTALHKVTYLQNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             ECTTCCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             cCCCCCceEEEEEECCeEccCC--------CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence            9887664 99999999876321        11248999999999999999999997553 34556666543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.69  E-value=4.4e-16  Score=141.81  Aligned_cols=129  Identities=10%  Similarity=0.058  Sum_probs=86.3

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCceeE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIPTKE  249 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~~~~  249 (616)
                      ...|.|.+++..|.|.|+|.|.|..|....     .+.+......    ........+..|..+.|.|.+.+. |.|.+.
T Consensus        82 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~-----~v~~~~~~~~----~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~  152 (226)
T 4f80_A           82 KAALRIHNVTASDSGKYLCYFQDGDFYEKA-----LVELKVAALG----SDLHVDVKGYKDGGIHLECRSTGWYPQPQIQ  152 (226)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEE-----EEEEEEEBCC----CCCEEEEEEEETTEEEEEEEEEEEBSCCEEE
T ss_pred             eEEEEEeeCchHHCeeEEEEEECCCcEEEE-----EEEEeeccce----ecccceeeeccCCceeeEEEeccCCCCCEEE
Confidence            447999999999999999999998775432     1222221111    122345678899999999999985 999999


Q ss_pred             EEECCeeecccC-cEEEEe-cCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEec
Q psy12426        250 WLCNDITIISKD-RFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD  308 (616)
Q Consensus       250 W~~~~~~~~~~~-~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~  308 (616)
                      |++++..+.... ...... .+....+.+..+...|.|.|+|.|.|..|.....+.+.+.+
T Consensus       153 W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~e  213 (226)
T 4f80_A          153 WSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIAD  213 (226)
T ss_dssp             EECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCT
T ss_pred             EEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECC
Confidence            999765443322 222222 22223444556788899999999999999988888887754

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.68  E-value=4.2e-16  Score=138.64  Aligned_cols=120  Identities=10%  Similarity=0.010  Sum_probs=77.7

Q ss_pred             eEEeecccCCCeEEEEEEEEeCC-CCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKG-GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL  251 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~-g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~  251 (616)
                      .|.|.++...|.|.|+|.|.|.. |....+. ...+.+......|.+...  ....+.+|+.+.|.|.+.+. .+.+.|+
T Consensus        59 ~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~-~~~l~V~~~~~~p~i~~~--~~~~v~~G~~v~L~C~~~~~-~~~v~W~  134 (198)
T 1ugn_A           59 QFPIPSITWEHTGRYRCYYGSDTAGRSESSD-PLELVVTGAYIKPTLSAQ--PSPVVNSGGNVTLQCDSQVA-FDGFILC  134 (198)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTTEECCCCC-CEEEEEECSSCCCEEEEE--SCSEEETTCCEEEEEECSSC-CSEEEEE
T ss_pred             EEEECCCCHHHCeEEEEEEECCCCCcccCCc-cEEEEEcccccCCccccC--CccccCCCCcEEEEEecCCC-CcEEEEE
Confidence            67777888888888888888776 4322221 122333332334554322  23578899999999999988 7899999


Q ss_pred             ECCeeecccC-cEEEE-ecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        252 CNDITIISKD-RFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       252 ~~~~~~~~~~-~~~~~-~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      +++..+.... ++... ..+....|.|.++...|.|.|+|.|.|..+
T Consensus       135 k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          135 KEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             ECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            9998764322 11111 122356999999999999999999999765

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.68  E-value=2.2e-16  Score=137.44  Aligned_cols=168  Identities=11%  Similarity=0.047  Sum_probs=115.4

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +|.|... |..+.+.+|+.+.|.|.+.|.|.| .|+|+|++..+..                                  
T Consensus         4 ~P~i~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----------------------------------   48 (176)
T 1f2q_A            4 KPKVSLN-PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE----------------------------------   48 (176)
T ss_dssp             CCCCEEE-SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC----------------------------------
T ss_pred             CCEEEcC-CCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC----------------------------------
Confidence            4666644 777889999999999999999886 6999999976651                                  


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCcccccEEEEeeccCcccccccCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCP  159 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~  159 (616)
                          ....|.|.++...|.|.|+|.+.|..+    +                       ..+                  
T Consensus        49 ----~~~~L~i~~v~~~d~G~Y~C~~~~~~~----s-----------------------~~~------------------   79 (176)
T 1f2q_A           49 ----TNSSLNIVNAKFEDSGEYKCQHQQVNE----S-----------------------EPV------------------   79 (176)
T ss_dssp             ----CSSEEEECSCCGGGCEEEEEECTTSSC----C-----------------------CCE------------------
T ss_pred             ----CceEEEEeccceecCEEEEEEcCCccc----c-----------------------ccE------------------
Confidence                135777888888888888888754221    0                       001                  


Q ss_pred             CceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEE
Q psy12426        160 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDIN  239 (616)
Q Consensus       160 ~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~  239 (616)
                                   .+.+.                                    .++.+ .. .....+..|+.+.|.|.
T Consensus        80 -------------~l~V~------------------------------------~~~~~-~~-~~~~~~~~g~~~~l~C~  108 (176)
T 1f2q_A           80 -------------YLEVF------------------------------------SDWLL-LQ-ASAEVVMEGQPLFLRCH  108 (176)
T ss_dssp             -------------EEEEE------------------------------------CSSEE-EE-ESCSEEETTSCEEEEEE
T ss_pred             -------------EEEEe------------------------------------Cccee-ec-CCcceeeCCCCEEEEEE
Confidence                         11111                                    00000 00 11235779999999999


Q ss_pred             Ee-eecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC-CceeeEEEEEecCCC
Q psy12426        240 VI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-TDKGTAKVTVLDIPS  311 (616)
Q Consensus       240 ~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g-~~~~~~~l~v~~~p~  311 (616)
                      +. +.|.+.+.|++++..+...        .....|.|.++...|.|.|+|.|.|..+ ..+..+.+.|..+|.
T Consensus       109 ~~~~~p~~~~~W~~~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          109 GWRNWDVYKVIYYKDGEALKYW--------YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EGGGCCEEEEEEEETTEECCSC--------CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             ecCCCCceEEEEEECCEEEeee--------cCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            94 6677799999999876321        2234899999999999999999999644 345567788877664

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.68  E-value=2.7e-17  Score=165.98  Aligned_cols=251  Identities=12%  Similarity=0.032  Sum_probs=147.2

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeee-cCC-eeeeeeCCeeee--------eccceEEEeecCCCCCceeEeeeccCC
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGE-PVP-HVDWRAGGNPLN--------LRPIWEKCAQTEGDTPKGKVLDLIEGN   71 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~l~--------~~G~Y~C~a~n~~~~~~~~v~~~~~~~   71 (616)
                      |.|....+.. .+.+|+.+.|.|.+.|. |.| .|+|+|++..+.        ..|.|.+.                   
T Consensus       120 P~i~~~~~~~-~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~-------------------  179 (434)
T 1igy_B          120 PSVYPLAPGS-AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLS-------------------  179 (434)
T ss_dssp             CCEEEECCCC-CCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEE-------------------
T ss_pred             CeEEEcCCcc-ccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEE-------------------
Confidence            4444332322 35799999999999986 777 999999997532        13445443                   


Q ss_pred             ccceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCc---------------ceeecCCCc-------
Q psy12426         72 HPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP---------------HIARAKKGK-------  129 (616)
Q Consensus        72 ~p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~---------------~~~~~~~p~-------  129 (616)
                                    ..|.|..+...| |.|.|.|.|..|..........               ..+...+|.       
T Consensus       180 --------------s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~  244 (434)
T 1igy_B          180 --------------SSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLI  244 (434)
T ss_dssp             --------------EEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHST
T ss_pred             --------------EEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhccc
Confidence                          357888888888 9999999998886421100000               111111221       


Q ss_pred             ----eee--eecCc----ccccEEEEeeccCcccccccCCCceEe---cccCCCCCeEEeecccCCCeEEEEEEEEeCCC
Q psy12426        130 ----CYH--LVGTL----LKDSIYEQLKRSGLFDQFHLCPIWEKC---AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  196 (616)
Q Consensus       130 ----~~~--~~g~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g  196 (616)
                          .+.  ..|.+    ...+.|++  +++.+.   ........   .........|.|.++..+|.|.|+|.|.|..|
T Consensus       245 G~~~~L~C~~~g~~p~P~~~~i~W~k--~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  319 (434)
T 1igy_B          245 TVTPKVTCVVVDISKDDPEVQFSWFV--DNVEVH---TAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF  319 (434)
T ss_dssp             TSCCEEEEEECCCCSSCCCCCBCBBS--SSCCBC---CCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred             CCCcEEEEEEeccccCCCCeEEEEEe--CCcccC---CcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCC
Confidence                111  22552    34799998  543322   10000000   00111234689999999999999999999888


Q ss_pred             CCCCCCCCCCEEe-ccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC--ceeEEEECCeeecccCcEEE--EecCC-
Q psy12426        197 PGEPSDPTAPHIA-RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI--PTKEWLCNDITIISKDRFKI--VNDDK-  270 (616)
Q Consensus       197 ~~~~s~~~~~~~~-~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~--~~~~W~~~~~~~~~~~~~~~--~~~~~-  270 (616)
                      ......   .+.. .....+|.+....+... ...|+.+.|.|.+.|.++  +.+.|++++..+........  ..++. 
T Consensus       320 ~~~~~~---~v~~~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~  395 (434)
T 1igy_B          320 PAPIEK---TISKTKGKPRAPQVYTIPPPKE-QMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSY  395 (434)
T ss_dssp             SSCCCC---CCCCCCSCCBCCCCEEECCCSS-SSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCE
T ss_pred             CCceeE---EEeccCCCCcCCEEEEECCCHH-HhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcE
Confidence            643221   1211 12234566543322221 235678999999998643  38999999987743211111  11111 


Q ss_pred             --ceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        271 --STKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       271 --~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                        .+.|.|......|.|.|+|.|.|...
T Consensus       396 ~~~s~l~i~~~~~~~~g~YtC~a~n~~l  423 (434)
T 1igy_B          396 FVYSKLNVQKSNWEAGNTFTCSVLHEGL  423 (434)
T ss_dssp             EEEEEEEEEHHHHHTTCCEEEEEEETTS
T ss_pred             EEEEEEEECchhccCCCEEEEEEEcCCC
Confidence              12466666666679999999999654

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.68  E-value=3.5e-16  Score=137.52  Aligned_cols=137  Identities=21%  Similarity=0.362  Sum_probs=106.6

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      .+|++|.++++..++.+++.|+|.+|..    .+.+|.|+|+..++.+. ..........++|.+|.|++.|.|+|+|.|
T Consensus         5 t~p~~P~~l~~~~~~~~sv~l~W~~p~~----~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   79 (186)
T 1qr4_A            5 TDLDNPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKKN-EMEIPVDSTSFILRGLDAGTEYTISLVAEK   79 (186)
T ss_dssp             ---CCCEEEEEESCCSSEEEEEEECCSS----CCSEEEEEEECTTCCEE-EEEECTTCSEEEEESCCSSCEEEEEEEEES
T ss_pred             CCCcCCCceEEEecCCCEEEEEEeCCCC----CccEEEEEEEeCCCCee-EEECCCCCCEEEECCCCCCCEEEEEEEEEc
Confidence            5788999999999999999999997632    58899999986554333 344566788999999999999999999999


Q ss_pred             CCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEe
Q psy12426        488 KGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATD  567 (616)
Q Consensus       488 ~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~  567 (616)
                      ..|.|.+..    ..                                                  ..+.+.+|.++++..
T Consensus        80 ~~~~s~~~~----~~--------------------------------------------------~~t~p~~P~~l~~~~  105 (186)
T 1qr4_A           80 GRHKSKPTT----IK--------------------------------------------------GSTVVGSPKGISFSD  105 (186)
T ss_dssp             SSCBCCCEE----EE--------------------------------------------------EECCCCCCSCEEEES
T ss_pred             CCccCCCEE----EE--------------------------------------------------EECCCCCCCccEEEE
Confidence            766654311    11                                                  124578899999999


Q ss_pred             ecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCCCeEEcc
Q psy12426        568 VDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKIT  607 (616)
Q Consensus       568 ~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~w~~~~  607 (616)
                      .+.++|.|+|.+|.    +.|.+|+|.|+..+++.|..+.
T Consensus       106 ~~~~sv~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~  141 (186)
T 1qr4_A          106 ITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVT  141 (186)
T ss_dssp             CCSSCEEEEECCCS----SCCSEEEEEEEETTCCCCEEEE
T ss_pred             eCCCEEEEEEECCC----CcccEEEEEEEeCCCCCceEEE
Confidence            99999999999883    7799999999988766655443

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.68  E-value=7.5e-16  Score=147.42  Aligned_cols=252  Identities=16%  Similarity=0.127  Sum_probs=154.9

Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCcccccEEEEeeccCcccccccCCCceEecccCCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTP  172 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (616)
                      +.+|+...+.|.+.                            |.|.+.+.|++  ++..+    ............+...
T Consensus        18 v~~G~~v~l~C~~~----------------------------g~p~~~i~W~k--~g~~i----~~~~~~~~~~~~~~~~   63 (304)
T 2yd9_A           18 GVSGGVASFVCQAT----------------------------GDPKPRVTWNK--KGKKV----NSQRFETIEFDESAGA   63 (304)
T ss_dssp             EETTSCEEEEEEEE----------------------------CSSCCEEEEC-------------CTTEEEEEETTTTEE
T ss_pred             ecCCCeEEEEEEEE----------------------------EeCCCeEEEEE--CCEEC----CCCceEEEEecCCCce
Confidence            45788899999987                            66667899998  53222    1222222212223336


Q ss_pred             eEEeecccC-CCeEEEEEEEEeCCCCCCCCCCCCCEEeccccC----CCceeccCCcceEEEcCCeEEEEEEEeeecCce
Q psy12426        173 KGKVLDLIE-GNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKV----SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT  247 (616)
Q Consensus       173 ~l~i~~l~~-~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~----~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~  247 (616)
                      .|.|.++.. .|.|.|+|.|.|..|....   ...+.+.....    .|.+. ..+....+..|+.+.|.|.+.+.|.+.
T Consensus        64 ~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~---~~~l~V~~~~~~p~~~p~i~-~~~~~~~v~~g~~v~l~C~~~g~p~~~  139 (304)
T 2yd9_A           64 VLRIQPLRTPRDENVYECVAQNSVGEITV---HAKLTVLREDQLPSGFPNID-MGPQLKVVERTRTATMLCAASGNPDPE  139 (304)
T ss_dssp             EEEECSCCTTTTCSEEEEEEECSSCEECC---EEEEEEECGGGCCTTCCEEE-ECCCCEEEETTSCEEECCEEECSSCCE
T ss_pred             EEEEecccccCCCeEEEEEEECCCCeEEE---EEEEEEeccccCCCCCCeee-cCCccEEEeCCCeEEEEEECccCCCCe
Confidence            899999997 9999999999998886321   12233322211    25553 345667889999999999999999999


Q ss_pred             eEEEECCeeecccC---cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee-EEEEEecCCCCCC---CCccce
Q psy12426        248 KEWLCNDITIISKD---RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT-AKVTVLDIPSPPE---GPLKPS  320 (616)
Q Consensus       248 ~~W~~~~~~~~~~~---~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~-~~l~v~~~p~~p~---~~~~~~  320 (616)
                      +.|++++..+....   ++....   ...|.|.++...|.|.|+|.|.|..|..... ..+.+.....+|.   .+....
T Consensus       140 v~W~k~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~  216 (304)
T 2yd9_A          140 ITWFKDFLPVDPSASNGRIKQLR---SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHE  216 (304)
T ss_dssp             EEEEETTEECCGGGGTTSEEECT---TSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBC
T ss_pred             EEEEECCEECcCCCCcceEEeCC---CeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceE
Confidence            99999998876432   332222   2389999999999999999999988865433 4555543222211   111223


Q ss_pred             eecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC-EEEccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        321 NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR-WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       321 ~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~-~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ...+..+.|.|......    ...  +.|...+... ...........+.+.++.  +.+.|+|.|.|..|...
T Consensus       217 v~~G~~v~l~C~~~g~p----~p~--v~W~~~~~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~a~N~~G~~~  282 (304)
T 2yd9_A          217 IMPGGNVNITCVAVGSP----MPY--VKWMQGAEDLTPEDDMPVGRNVLELTDVK--DSANYTCVAMSSLGVIE  282 (304)
T ss_dssp             CCTTCCEEEEEEEEEES----CCE--EEEEETTEECSCSSSCCBSEEEEEECSCC--SCEEEEEEEEETTEEEE
T ss_pred             EcCCCeEEEEEEEeeeC----CCE--EEEEECCEECCCcccccCCcEEEEEcccc--cCEEEEEEEEeCCCcEE
Confidence            34567888999753221    112  2332221100 000001223346666664  57899999999998753

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.68  E-value=6.6e-16  Score=143.18  Aligned_cols=127  Identities=9%  Similarity=0.027  Sum_probs=90.9

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCC--CCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCcee
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD--PTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK  248 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~--~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~  248 (616)
                      ...|.|.+++.+|.|.|+|.|.|..+......  ....+.+.....+|.+....+..+.+.+|+.+.|.|.+.+.|.|.+
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v  168 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV  168 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence            45799999999999999999998776532211  0122333333334555455556677888999999999999999999


Q ss_pred             EEEECCeeecccCcE----------------------EEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        249 EWLCNDITIISKDRF----------------------KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       249 ~W~~~~~~~~~~~~~----------------------~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      .|++++..+......                      .... .....|.|.++...|.|.|+|.|.|..|..
T Consensus       169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASF-SGARNLVIRAAKITDAGRVWCELATGQGEL  239 (250)
T ss_dssp             EEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEE-ETTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred             EEEeCCCcccccccCcceeEeccCCCCccccCceEeccccc-CCccEEEEecCCcccCEEEEEEecCCcccc
Confidence            999998766432110                      0000 022489999999999999999999966643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.68  E-value=1.7e-16  Score=154.64  Aligned_cols=127  Identities=17%  Similarity=0.202  Sum_probs=92.9

Q ss_pred             eEEeecccCCCeE-EEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEE
Q psy12426        173 KGKVLDLIEGNQY-EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL  251 (616)
Q Consensus       173 ~l~i~~l~~~~~~-~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~  251 (616)
                      .|.|.++...|.| .|+|.|.|..|..... ..+.+     ..+|.+     ....+..|+.+.|.|.+.|.|.|.+.|+
T Consensus       213 ~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~-~~l~V-----~~~P~i-----~~~~~~~g~~v~l~C~~~g~P~p~i~W~  281 (347)
T 2ifg_A          213 GLTLANVTSDLNRKNVTCWAENDVGRAEVS-VQVNV-----SFPASV-----QLHTAVEMHHWCIPFSVDGQPAPSLRWL  281 (347)
T ss_dssp             EEEEESCCSTTTTCCEEECCEETTEECCEE-ECCCC-----BEEEEE-----EECCCEESSSEEEEEEEEEESCCEEEEE
T ss_pred             eEEEeeCChHHCCCeEEEEEEcCCCCEEEE-EEEEE-----cCCCee-----eeccCccCceEEEEEEeeecCCCcEEEE
Confidence            5777888888888 8888888877664321 11111     123332     1122357899999999999999999999


Q ss_pred             ECCeeecccCcEEEEecC-------CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy12426        252 CNDITIISKDRFKIVNDD-------KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP  310 (616)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~-------~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p  310 (616)
                      +++..+............       ....|.|.++...|.|.|+|.|.|..|....++.+.|..+|
T Consensus       282 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          282 FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             ETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             eCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            999988755544433211       24579999999999999999999999998888888877654

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.68  E-value=2.3e-16  Score=143.36  Aligned_cols=154  Identities=18%  Similarity=0.182  Sum_probs=97.3

Q ss_pred             CCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEE
Q psy12426        339 GTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTV  418 (616)
Q Consensus       339 ~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~  418 (616)
                      +..+.+|.+++.......+........+.+.+.+|.+++.|.|+|.|.|..|.+.++.   ...+.+....|..|..+..
T Consensus        19 ~~~Vt~Y~~~~~~~~~~~~~~~~~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~---~~~~~t~~~~~~~~~~~~~   95 (232)
T 4go6_B           19 NVMVTHYFLPPDDAVPSDDDLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSE---ISAFKTCLPGFPGAPCAIK   95 (232)
T ss_dssp             EEEECEEECCCC------------------CEEECCTTCEEEEEEEEEETTEEEEECC---CEEEECCCTTSCCCCEEEE
T ss_pred             CEEEEEEEEEeeCCCCCcEEEEECCCccEEEeCCCCCCCEEEEEEEEEeCCCcccccc---ceeeeecCCCCCCCCeeeE
Confidence            4457788887765433333333334566799999999999999999999999987743   3344333333333444555


Q ss_pred             EEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-C-------------ceEeEeecCCccEE-------EcCCCCCCC
Q psy12426        419 TDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-P-------------WEKACIVPANITAT-------SVPDLKEGE  477 (616)
Q Consensus       419 ~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~-------------~~~~~~~~~~~~~~-------~l~~L~p~t  477 (616)
                      ...+.+++.|+|.+|..+++ +|.+|.|+|+..+. .             |............+       .+.+|.+++
T Consensus        96 ~~~~~~sv~l~W~~P~~~~G-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~t  174 (232)
T 4go6_B           96 ISKSPDGAHLTWEPPSVTSG-KIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKP  174 (232)
T ss_dssp             EEEETTEEEEEEECCSCCSS-CCCEEEEEEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEESSSE
T ss_pred             EecCCCEEEEEEeCCCCCCC-ceeeEEEEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecCccCC
Confidence            56788999999999877666 79999999987654 1             12211112222222       345789999


Q ss_pred             eEEEEEEEEcCCCCCCCCC
Q psy12426        478 EYEFRVIAVNKGGPGEPSK  496 (616)
Q Consensus       478 ~Y~~~v~a~n~~G~g~~s~  496 (616)
                      .|.|||+|.|..|.|++|.
T Consensus       175 ~Y~frV~A~N~~G~Gp~S~  193 (232)
T 4go6_B          175 AIIFRIAARNEKGYGPATQ  193 (232)
T ss_dssp             EEEEEEEEECSSCBCCCEE
T ss_pred             ceEEEEEEECCCcCCCCcc
Confidence            9999999999999998775

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.8e-16  Score=143.16  Aligned_cols=162  Identities=16%  Similarity=0.133  Sum_probs=113.2

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeec--cceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLR--PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~--G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      ||.|.  .|.++.+.+|+.+.|.|.+.|.|.|.|+|+|+|..|...  ..|....                         
T Consensus        19 ~P~~~--~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~-------------------------   71 (215)
T 3mtr_A           19 APKLQ--GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN-------------------------   71 (215)
T ss_dssp             EEEEE--CCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEE-------------------------
T ss_pred             CCccc--CCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEec-------------------------
Confidence            46663  477899999999999999999999999999999988743  2333221                         


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcce-eecCCCceee-----------ee------cCcccc
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHI-ARAKKGKCYH-----------LV------GTLLKD  140 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~-~~~~~p~~~~-----------~~------g~p~~~  140 (616)
                         ......|.|.++...|.|.|.|.|.|..|.....  ..... .....|..+.           +.      |.|+..
T Consensus        72 ---~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~  146 (215)
T 3mtr_A           72 ---TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLE--FILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILK  146 (215)
T ss_dssp             ---ETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEE--EEEEECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEE
T ss_pred             ---CCCeeEEEEecCChhhCeEEEEEEEECCCceEEE--EEEEECCCCCCCcceEEEEecceEEEEEecCCccCCCceEE
Confidence               1124689999999999999999999999976433  11111 1112222211           11      457777


Q ss_pred             cEEEEeeccCcccccccCCCceEecc---cCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCC
Q psy12426        141 SIYEQLKRSGLFDQFHLCPIWEKCAQ---TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD  202 (616)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~  202 (616)
                      |.+++  .    .  .....|.....   .......|.|.+|.+++.|.|+|.|.|..|.+..+.
T Consensus       147 y~v~~--~----~--~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~  203 (215)
T 3mtr_A          147 YKAEW--R----A--VGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISA  203 (215)
T ss_dssp             EEEEE--E----E--TTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCC
T ss_pred             EEEEE--E----E--CCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCccc
Confidence            88877  3    1  23345654321   111226899999999999999999999999988764

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.68  E-value=2e-15  Score=139.56  Aligned_cols=135  Identities=10%  Similarity=0.045  Sum_probs=92.7

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccc------------cCCCceeccCCcceEEEcCCeEEEEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK------------KVSPYINRDQLSDIKVRAGSNFEFDI  238 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~------------~~~P~~~~~~~~~~~v~~g~~~~l~c  238 (616)
                      ...|.|.+++++|.|.|+|.|.|..+....+. ...+.+...            ..+|.+ ...+..+.+.+|+.+.|.|
T Consensus        80 ~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~G~~v~L~C  157 (247)
T 2ghw_B           80 TLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQ-GTLVTVSSGGGGSGGGGSGGGGSETTL-TQSPATLSLSPGERATLSC  157 (247)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEEECC-CEEEEECSCC------------CCCCE-EEECSEEEECTTSCEEEEE
T ss_pred             EEEEEECcCCHHHCEEEEEeeeccCCccccCC-ceEEEEecccccccccccCCCCcceEE-EccCCEEEecCCCcEEEEE
Confidence            34799999999999999999999733211111 112333322            123333 3345567789999999999


Q ss_pred             EEeeecCceeEEEE--CCeeec------------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEE
Q psy12426        239 NVIGEPIPTKEWLC--NDITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAK  303 (616)
Q Consensus       239 ~~~~~p~~~~~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~  303 (616)
                      .+.+.+.+.+.|++  ++..+.            ...++.+...+....|.|.+++..|+|.|+|.|.|..+.. .....
T Consensus       158 ~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~  237 (247)
T 2ghw_B          158 RASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTK  237 (247)
T ss_dssp             EESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred             EeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEE
Confidence            99999999999999  554321            1345666555566789999999999999999999854332 23445


Q ss_pred             EEEe
Q psy12426        304 VTVL  307 (616)
Q Consensus       304 l~v~  307 (616)
                      |.|.
T Consensus       238 l~V~  241 (247)
T 2ghw_B          238 VEVK  241 (247)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            5554

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.67  E-value=2.6e-16  Score=142.51  Aligned_cols=131  Identities=11%  Similarity=0.092  Sum_probs=91.5

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW  250 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W  250 (616)
                      ...|.|.+++.+|.|.|.|.+.+..+......    .... ...++...........+..+..+.+.|.+.+.|.|.+.|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W  152 (218)
T 4frw_A           78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQAR----LRLR-VLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTW  152 (218)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEETTEEEEEE----EEEE-EEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEE
T ss_pred             eEEEEEeeccHHHCCceeEEEEeccCceeeeE----EEEE-EeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEE
Confidence            44799999999999999999988766433211    1111 112222223334456677889999999999999999999


Q ss_pred             EECCeeecccCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        251 LCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      ++++..+........... ...+.|.|.++...|.|.|+|.|.|..|.......+.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          153 DTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             EESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             EECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            999877654332221110 11347999999999999999999999998766665554

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.67  E-value=1.3e-15  Score=155.50  Aligned_cols=240  Identities=9%  Similarity=-0.001  Sum_probs=141.8

Q ss_pred             cCCCeEEEEEEEeee-cC-C-eeeeeeCCeeeee----------ccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426         15 SAGTTLKFDANIIGE-PV-P-HVDWRAGGNPLNL----------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus        15 ~~g~~v~l~C~~~g~-P~-p-~v~W~~~~~~l~~----------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      .+|+.+.|.|.+.|. |. | .|+|+|++.....          .|.|..                              
T Consensus       139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~------------------------------  188 (475)
T 1iga_A          139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTT------------------------------  188 (475)
T ss_pred             CCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEE------------------------------
Confidence            689999999999997 66 5 9999998853211          122211                              


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCC----------------------CcceeecCCCc--------ee
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT----------------------APHIARAKKGK--------CY  131 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~----------------------~~~~~~~~~p~--------~~  131 (616)
                         ...|.|..+...|.|.|.|.|.|..|........                      ....+....|.        .+
T Consensus       189 ---~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v  265 (475)
T 1iga_A          189 ---SSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEA  265 (475)
T ss_pred             ---EEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCce
Confidence               1257777888888999999999987632111000                      01111111121        11


Q ss_pred             e----eecCcc---cccEEEEeeccCcccccccCCCceEecccCC---CCCeEEeecccCCCeEEEEEEEEeCCCCCCCC
Q psy12426        132 H----LVGTLL---KDSIYEQLKRSGLFDQFHLCPIWEKCAQTEG---DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  201 (616)
Q Consensus       132 ~----~~g~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s  201 (616)
                      .    ..|.+.   ..+.| .  . +...   ............+   ....|.|.++...|.|.|+|.|.|..|.....
T Consensus       266 ~L~C~~~g~~p~~~~~i~W-~--~-~~~~---~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~  338 (475)
T 1iga_A          266 NLTCTLTGLRDASGVTFTW-T--P-SSGK---SAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLT  338 (475)
T ss_pred             EEEEEEEcccCCCceEEEE-C--C-CCcC---CccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceE
Confidence            1    115433   46777 4  3 2111   0000000000001   22368999999999999999999988764211


Q ss_pred             CCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeee-c-CceeEEEECCeeecccCcEE----EE---ecC---
Q psy12426        202 DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-P-IPTKEWLCNDITIISKDRFK----IV---NDD---  269 (616)
Q Consensus       202 ~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p-~~~~~W~~~~~~~~~~~~~~----~~---~~~---  269 (616)
                         ..+.......+|.+....+....+..|+.+.|.|.+.+. | .+.+.|+++|..+.......    ..   .++   
T Consensus       339 ---~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~  415 (475)
T 1iga_A          339 ---ATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFA  415 (475)
T ss_pred             ---EEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEE
Confidence               112222234667665444443346789999999999986 3 35999999998876543111    11   111   


Q ss_pred             CceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        270 KSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       270 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      ..+.|.|......+.|.|+|.|.|....
T Consensus       416 ~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          416 VTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             EEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            1235677777777899999999996543

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.67  E-value=1.1e-15  Score=152.80  Aligned_cols=262  Identities=16%  Similarity=0.160  Sum_probs=163.9

Q ss_pred             cCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCC-----CceEEEEEEEEe
Q psy12426        277 FDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGG-----TDILHYVVEKMD  351 (616)
Q Consensus       277 ~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~-----~~i~~y~v~~~~  351 (616)
                      ..+...+.+.|.+.|.|..|.. ..+.+.-...|.+|.+ +.+.... +.+.|+|.+|.....     .....|.|+|+.
T Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~v~p~pP~~-l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~  153 (419)
T 2gys_A           77 QSFVVTDVDYFSFQPDRPLGTR-LTVTLTQHVQPPEPRD-LQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKR  153 (419)
T ss_dssp             SCCCTTCEEEEEEEESSCCCEE-EEEEGGGSBCCCCCEE-EEEEEET-TEEEEEEECCC-----CCSCGGGEEEEEEEEE
T ss_pred             cceeeecccEEEEeCCcccccc-ceEcHHHcccCCCCCc-eEEEecC-CeEEEEECCCccccccchhccCceEEEEEEcc
Confidence            3444456777778776655531 1222222346778876 6666655 699999998765321     246889999988


Q ss_pred             CCCCCEEEccc--cccceEEec--cccCCCeEEEEEEEEecC---cCCCCccccCCEEccCCCCCCCCCCCCEEEEecCC
Q psy12426        352 METGRWVPMGD--VSGTYTRAE--NLIEGHDYNFRVKAVNKI---GESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKD  424 (616)
Q Consensus       352 ~~~~~~~~~~~--~~~~~~~i~--~L~~~~~y~~~v~a~n~~---g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~  424 (616)
                      .+ ..|.....  .....+.+.  +|.+++.|.++|+|.+..   +.|.+++++..+.+.+....|.+|.++.+...+.+
T Consensus       154 ~~-~~w~~~~~~~~~~~~~~~~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~~~~p~~l~c~~~~~~  232 (419)
T 2gys_A          154 LQ-DSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAA  232 (419)
T ss_dssp             TT-SCSTTCEEEEESSSEEEECTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCCTTSCEEEEEEECSSS
T ss_pred             CC-CChhheeeecccceEEEechhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeeccccccCCCceEEEEECCce
Confidence            75 55543322  123444555  899999999999999965   45788888999998888777888999998888889


Q ss_pred             eEEEEecCCCCCCCCcceeEEEEEeeCCC------C-ceEeE---eecC------CccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        425 HVDLEWTPPKKDGGSPISQYIIEKKPKYG------P-WEKAC---IVPA------NITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       425 ~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~------~-~~~~~---~~~~------~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      .+.+.|+++... .. ...|.|+|+....      . +....   ...+      ....+.+.+|.+.+.|.|+|.|.++
T Consensus       233 ~l~c~W~~~~~~-~~-~~~y~l~y~~~~~~g~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~~~l~~~~~y~i~V~a~~~  310 (419)
T 2gys_A          233 VLSCSWEVRKEV-AS-SVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRA  310 (419)
T ss_dssp             EEEEEEEEEHHH-HT-TCCEEEEEECC-----CCCCCCEECCCEEEECCTTTEEEEEEEEECSCTTTCCEEEEEEEECCC
T ss_pred             EEEeEEECCCCC-CC-ceeEEEEEEecCccccccCcccccCCCcccccCCCcceeEEeEEECccCCccCEEEEEEEEccC
Confidence            999999964211 11 2459999986531      1 22221   1101      1236778899999999999999754


Q ss_pred             CCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEee
Q psy12426        489 GGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDV  568 (616)
Q Consensus       489 ~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~  568 (616)
                      .|.  ... ...                                                      ..++|| .+.+.. 
T Consensus       311 ~~~--~~~-~~~------------------------------------------------------v~p~PP-~l~v~~-  331 (419)
T 2gys_A          311 EKH--IKS-SVN------------------------------------------------------IQMAPP-SLQVTK-  331 (419)
T ss_dssp             CEE--EEG-GGS------------------------------------------------------BCCCCC-EEEEC--
T ss_pred             Ccc--ccc-eEE------------------------------------------------------EEECCC-CeEEEE-
Confidence            331  100 000                                                      124555 244333 


Q ss_pred             cCCcEEEEeeCCCCCCCCceeeeEEEEeecCCCCeE
Q psy12426        569 DKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWI  604 (616)
Q Consensus       569 ~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~w~  604 (616)
                      +.+++.|+|++|.......+.+|+|.|+..+ ..|.
T Consensus       332 ~~~~l~l~W~~P~~~~~~~~l~Yev~y~~~~-~~w~  366 (419)
T 2gys_A          332 DGDSYSLRWETMKMRYEHIDHTFEIQYRKDT-ATWK  366 (419)
T ss_dssp             --CCCEEEEEC--------CEEEEEEEECSS-SCST
T ss_pred             eCCeEEEEECCCcccccccceEEEEEEEcCC-CCcc
Confidence            4789999999985321236789999999775 4464

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.67  E-value=3.1e-16  Score=137.55  Aligned_cols=65  Identities=11%  Similarity=0.002  Sum_probs=49.9

Q ss_pred             EEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        227 KVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       227 ~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      .+..|+.+.|.|.+.+.+ +.+.|++++..+.......    .....|.|.++...|.|.|+|.|.|..+
T Consensus       104 ~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          104 AVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPER----WYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             SSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCE----EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             eecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCC----CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            456899999999987654 6999999998765422211    1223788999999999999999999754

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.67  E-value=1.2e-16  Score=143.74  Aligned_cols=122  Identities=15%  Similarity=0.193  Sum_probs=86.4

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE-eeecCceeEE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTKEW  250 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~-~~~p~~~~~W  250 (616)
                      ..|.|.+++..|.|.|+|.|.|..|....+ ....+.+.   .+|.+.. ......+..|+.+.|.|.+ .+.|.+.+.|
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~-~~~~l~V~---~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W  142 (209)
T 1nbq_A           68 TGITFKSVTREDTGTYTCMVSEEGGNSYGE-VKVKLIVL---VPPSKPT-VNIPSSATIGNRAVLTCSEQDGSPPSEYTW  142 (209)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTSSCEEC-CEEECCEE---BCCCCCC-CCCBSEEETTSCEEECCCCCSCBSCCEEEE
T ss_pred             cEEEEeeCCHHHCcEEEEEEecCCCCccce-EEEEEEEe---cCCcCCC-cccccceecCCEEEEEEeCCCCCCCceeEE
Confidence            478899999999999999999886632211 11111221   2333321 1234568899999999997 8999999999


Q ss_pred             EECCeeecccCcE-------EEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        251 LCNDITIISKDRF-------KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       251 ~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      ++++..+......       ..........|.|.++...|.|.|+|.|.|..|..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          143 FKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             EETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             EECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence            9999877644321       11112234589999999999999999999999887

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.66  E-value=1.6e-15  Score=133.52  Aligned_cols=115  Identities=10%  Similarity=-0.018  Sum_probs=78.8

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.+++..|.|.|+|.|.|..|....+. ...+.+.....+|.+... + ...+.+|+.++|.|.+.+ +.+.+.|+|
T Consensus        58 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~-~~~l~V~~~~~~p~i~~~-p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k  133 (188)
T 1oll_A           58 KFYIPDMNSRMAGQYSCIYRVGELWSEPSN-LLDLVVTEMYDTPTLSVH-P-GPEVISGEKVTFYCRLDT-ATSMFLLLK  133 (188)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEECCCCC-CEEEEEESCSCCCEEEEE-S-CSEEETTCEEEEEEECSS-SCSEEEEEE
T ss_pred             EEEeCcCCcccCeEEEEEecCCCCCCCCCC-ceEEEecccCCCCeEEEC-C-CCccccCCEEEEEEEcCC-CCCEEEEEE
Confidence            567777888888888888877654333221 122333322335655422 2 356889999999999866 456899999


Q ss_pred             CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      ++..+..    ..........|.|.+++..|.|.|+|.|.|..
T Consensus       134 ~g~~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          134 EGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             ESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             CCccccc----cccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            9876543    12233455689999999999999999999854

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.66  E-value=9.1e-15  Score=128.30  Aligned_cols=84  Identities=17%  Similarity=0.287  Sum_probs=70.2

Q ss_pred             cceEEEcCCeEEEEEEEeeec-CceeEEEE---CCeeec-c--cCcEEEEecCCceEEEecCCC-CCCcEEEEEEEEcCC
Q psy12426        224 SDIKVRAGSNFEFDINVIGEP-IPTKEWLC---NDITII-S--KDRFKIVNDDKSTKLKVFDSK-RGDSGIYTLAVKNSW  295 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p-~~~~~W~~---~~~~~~-~--~~~~~~~~~~~~~~l~i~~l~-~~~~g~y~c~a~n~~  295 (616)
                      ....+..|+.+.|.|.+.+.| .+.+.|++   ++..+. .  ..++.+...+....|.|.++. ..|.|.|+|.|.|..
T Consensus        91 ~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~  170 (184)
T 3b5h_A           91 SSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSK  170 (184)
T ss_dssp             SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETT
T ss_pred             CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCC
Confidence            456788999999999999999 79999999   444433 2  266777777777899999999 999999999999999


Q ss_pred             CCceeeEEEEEe
Q psy12426        296 GTDKGTAKVTVL  307 (616)
Q Consensus       296 g~~~~~~~l~v~  307 (616)
                      |.....+.|.|.
T Consensus       171 g~~~~~~~l~V~  182 (184)
T 3b5h_A          171 GSDQAIITLRVR  182 (184)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CcceEEEEEEEe
Confidence            998888877775

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.66  E-value=2.6e-14  Score=146.74  Aligned_cols=276  Identities=10%  Similarity=0.031  Sum_probs=148.4

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecC----CeeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCcccee
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPV----PHVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~----p~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      .+..|..+.+.+|++|+|.|.+.+.+.    +.|.|||+  |+.+..- .|.-.  ..+......+++...         
T Consensus         3 ~l~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l-~~~~~~~~~~~~~~~~~R~~~~---------   72 (512)
T 1zvo_C            3 QLQESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWI-GGVYYTGSIYYNPSLRGRVTIS---------   72 (512)
T ss_pred             EEECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEE-EEEecCCCEEECCccCCceEEE---------
Confidence            344588999999999999999987654    67999996  3322110 00000  000000001111110         


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEEcCCC-----------C---CCCC--C----CCCcceeecCCC--------
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG-----------P---GEPS--D----PTAPHIARAKKG--------  128 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g-----------~---~~~~--~----~~~~~~~~~~~p--------  128 (616)
                        ........+|.|.++++.|+|.|.|.+.+..+           .   +...  .    ......+....|        
T Consensus        73 --~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~  150 (512)
T 1zvo_C           73 --VDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDN  150 (512)
T ss_pred             --ecCCCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCC
Confidence              00012246899999999999999999998642           0   0000  0    000011111111        


Q ss_pred             ceeee----ecC-ccc-ccEEEEeeccCcccccccCCCceEecccCC---CCCeEEeecccCCCeEEEEEEEEeCCCCCC
Q psy12426        129 KCYHL----VGT-LLK-DSIYEQLKRSGLFDQFHLCPIWEKCAQTEG---DTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  199 (616)
Q Consensus       129 ~~~~~----~g~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  199 (616)
                      ..+.+    .|. |.+ .+.|++  .... .   ............+   ....|.|.....+ .|.|+|.|.|..|...
T Consensus       151 ~~v~L~C~~~g~~P~p~~v~W~~--~~~~-~---~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~  223 (512)
T 1zvo_C          151 SPVVLACLITGYHPTSVTVTWYM--GTQS-Q---PQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSK  223 (512)
T ss_pred             CeEEEEEEEEeeecCceEEEEEc--Cccc-C---ceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCce
Confidence            11221    154 544 788887  4211 0   0000000000011   0124778777766 8999999999887643


Q ss_pred             CCC--------CCCCEEecc-------------------------------------------------ccCCCceeccC
Q psy12426        200 PSD--------PTAPHIARA-------------------------------------------------KKVSPYINRDQ  222 (616)
Q Consensus       200 ~s~--------~~~~~~~~~-------------------------------------------------~~~~P~~~~~~  222 (616)
                      ...        ....+.+..                                                 ...+|.+....
T Consensus       224 ~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~  303 (512)
T 1zvo_C          224 KEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLT  303 (512)
T ss_pred             EEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEEC
Confidence            211        000111110                                                 11234443333


Q ss_pred             CcceEEEcCCeEEEEEEEeeecC--ceeEEEECCeeecccCc---EEEEecCC---ceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPI--PTKEWLCNDITIISKDR---FKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~--~~~~W~~~~~~~~~~~~---~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +....+..|+.+.|.|.+.+..+  ..+.|++++..+.....   .....++.   .+.|.|......|.|.|+|.|.|.
T Consensus       304 p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~  383 (512)
T 1zvo_C          304 PAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHP  383 (512)
T ss_pred             CChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeC
Confidence            33344668999999999998633  48999999987542111   11111111   246889888888999999999998


Q ss_pred             CCCce
Q psy12426        295 WGTDK  299 (616)
Q Consensus       295 ~g~~~  299 (616)
                      .+...
T Consensus       384 ~~~~~  388 (512)
T 1zvo_C          384 SLPPQ  388 (512)
T ss_pred             CCCCC
Confidence            76543

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.66  E-value=3.1e-15  Score=141.27  Aligned_cols=245  Identities=14%  Similarity=0.116  Sum_probs=147.2

Q ss_pred             EcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe-
Q psy12426        229 RAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-  307 (616)
Q Consensus       229 ~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~-  307 (616)
                      ..|++++|.|.+...+  .+.|.+++.....      .   ...+|.|.++...|.|.|+|.+   .|.....+.+.+. 
T Consensus        19 ~~G~~v~l~C~~~~~~--~i~W~~~~~~~~~------~---~~~~L~i~~~~~~d~G~YtC~~---~~~~~~~~~l~v~~   84 (306)
T 3d85_D           19 APGEMVVLTCDTPEED--GITWTLDQSSEVL------G---SGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLHK   84 (306)
T ss_dssp             CCCEEEEEECSSSCCS--SCEEEETTCCCCC------E---ESSEEEEEECSGGGCEEEEEEE---TTEEEEEEEEEEEE
T ss_pred             ccCCcEEEECCCCCCC--cCEEEECCccccC------C---CCCEEEEEecCcCCCceEEEee---CCcccceEEEEEEe
Confidence            3799999999988433  7999999875321      1   1238999999999999999999   3555445555443 


Q ss_pred             ------------cCCCCCCCC-ccceeecC-CeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc--cccceE---
Q psy12426        308 ------------DIPSPPEGP-LKPSNITK-SSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTYT---  368 (616)
Q Consensus       308 ------------~~p~~p~~~-~~~~~~~~-~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~---  368 (616)
                                  .++.+|..+ +....... ..+++.|.+... +. ....|...+. .....|..+..  .....+   
T Consensus        85 ~~~~~~~t~i~~~~~~pp~~~~lsC~~~~~~~~~~C~W~pg~~-~~-l~~~~~~~r~-~~~~~~~~C~~~~~~~~~c~v~  161 (306)
T 3d85_D           85 KEDGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFTCWWLTTIS-TD-LTFSVKSSRG-SSDPQGVTCGAATLSAERVRGD  161 (306)
T ss_dssp             EETTEECCCSSCCCC---CCCCCEEEBSSSSSEEEEEEEESCC-SS-EEEEEEEEEC-SSSCEEEEECCCEEEEEEEC--
T ss_pred             ccCCcceeeeecccCCCCCCCcceEEcCCcccCcEEEecCCCC-Cc-eeEEEEEEec-CCCCcceECCCCCCCccceeec
Confidence                        223344432 33332222 389999996433 22 2334444322 11223443322  001111   


Q ss_pred             ----------EeccccCC----CeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEec-CCeEEEEecCC
Q psy12426        369 ----------RAENLIEG----HDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWG-KDHVDLEWTPP  433 (616)
Q Consensus       369 ----------~i~~L~~~----~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~-~~~v~l~W~~p  433 (616)
                                .+..+.+.    ..|.|+|.|.|..|.....   ..+. ......|++|.++.+.... ...+.|+|++|
T Consensus       162 ~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~---~~f~-~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P  237 (306)
T 3d85_D          162 NKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYT---SSFF-IRDIIKPDPPKNLQLKPLKNSRQVEVSWEYP  237 (306)
T ss_dssp             CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEE---EEEC-HHHHBCCCCCEEEEEEEC----CEEEEEECC
T ss_pred             CccccceeeeeeccccccccccEEEEEEEEEEccCCccccc---eEEE-ehhcEecCCCceEEEEEecCCCcEEEEEcCC
Confidence                      12233333    4899999999998864321   1111 1123578899999988753 47899999987


Q ss_pred             CCCC---CCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCC
Q psy12426        434 KKDG---GSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA  499 (616)
Q Consensus       434 ~~~~---~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~  499 (616)
                      ..-+   +--...|+|+|+..+. .|.....  ...+++.|.   +++.|.|+|+|.+..|.|.+|..+.
T Consensus       238 ~~~~~p~~~~~L~Y~vryr~~~~~~~~~~~~--~~~ts~~l~---~~~~Y~vqVRa~~~~~~G~WSeWS~  302 (306)
T 3d85_D          238 DTWSTPHSYFSLTFCVQVQGKSKREKKDRVF--TDKTSATVI---CRKNASISVRAQDRYYSSSWSEWAS  302 (306)
T ss_dssp             TTSCSCTTTSCEEEEEEEECC------CEEE--ESSSEEEEC---CCSSCEEEEEEEESSSCCCCCCCEE
T ss_pred             CCCcCCCceeeEEEEEEEEECCCCccEEEee--ccccEEEEe---CCCeEEEEEEeccCCCCCCCCCCCC
Confidence            5321   1123689999998775 5544332  344567764   5999999999999999999988654

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.66  E-value=1e-15  Score=136.46  Aligned_cols=139  Identities=21%  Similarity=0.363  Sum_probs=108.2

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      ..| +|.++.+..++.+++.|+|.+|.   +..+.+|.|+|+..+. .+............++|.+|.|++.|.|+|+|.
T Consensus        22 ~~P-~P~~l~~~~~~~~sv~lsW~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   97 (203)
T 2gee_A           22 EVP-QPTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTV   97 (203)
T ss_dssp             CCC-CCEEEEEECCTTTCEEEEEECCS---SSSCCEEEEEEEESSSSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             cCc-CCCccEEEecCCCEEEEEecCCC---CCCccEEEEEEEECCCCCCceeEEcCCCccEEEeCCCCCCCEEEEEEEEE
Confidence            556 78899999999999999999865   2368999999998776 344444556778899999999999999999999


Q ss_pred             cCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEE
Q psy12426        487 NKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEAT  566 (616)
Q Consensus       487 n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~  566 (616)
                      |..|.|.++.   ..+.                                                  ..+| +|.++++.
T Consensus        98 ~~~g~s~~~~---~~t~--------------------------------------------------~~~p-~P~~l~~~  123 (203)
T 2gee_A           98 KNGGESTPTT---LTQQ--------------------------------------------------TAVP-PPTDLRFT  123 (203)
T ss_dssp             SSSCBCCCEE---EEEE--------------------------------------------------CCCC-CCEEEEEE
T ss_pred             eCCCccccEe---eeec--------------------------------------------------CCCc-CCCceEEE
Confidence            9988775432   1111                                                  1223 77788888


Q ss_pred             eecCCcEEEEeeCCCCCCCCceeeeEEEEeecCC-CCeEEcc
Q psy12426        567 DVDKDHIKIKWQQPISNGGSAIKGYEVERRERTS-GRWIKIT  607 (616)
Q Consensus       567 ~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~w~~~~  607 (616)
                      ..+.+++.|+|++|.   ++.|.+|+|.|+..++ ..|..+.
T Consensus       124 ~~~~~sv~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~  162 (203)
T 2gee_A          124 NIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELS  162 (203)
T ss_dssp             EEETTEEEEEEECCS---SCCCSEEEEEEEETTCGGGCEEEE
T ss_pred             EcCCCEEEEEEcCCC---CCCccEEEEEEEECCCCCccEEEE
Confidence            999999999999984   4789999999998654 3455443

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.66  E-value=2e-15  Score=135.49  Aligned_cols=131  Identities=12%  Similarity=0.169  Sum_probs=95.7

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.+++..|.|.|+|.+.+..+....  ....+.+......|.+..... .  +..|+.+.|.|.+.+.| +.+.|++
T Consensus        72 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~--~~~~l~V~~~~~~p~i~~~~~-~--~~~g~~v~l~C~~~~~p-p~i~W~~  145 (208)
T 3r4d_A           72 SLLFQMITMKDMGVYTLDMTDENYRRTQ--ATVRFHVHQPVTQPFLQVTNT-T--VKELDSVTLTCLSNDIG-ANIQWLF  145 (208)
T ss_dssp             CEEECSCCGGGCEEEEEEEECSSCEEEE--EEEEEEEECCCCCCEEEESCS-S--CCTTCCEEEEEECSCTT-CEEEEEE
T ss_pred             eEEEccccccCCeEEEEEEEcccCceeE--EEEEEEeccCCCCCEEecCCc-e--EeeCCCEEEEEECCCCC-CceEEEE
Confidence            6999999999999999999997542211  112233333334455533222 2  78999999999999976 7999999


Q ss_pred             CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEEecCCC
Q psy12426        253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPS  311 (616)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v~~~p~  311 (616)
                      ++..+..+.++.+...+  ..|.|.++...|.|.|+|.|.|..|.. +..+.+.+..+|.
T Consensus       146 ~g~~l~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~  203 (208)
T 3r4d_A          146 NSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH  203 (208)
T ss_dssp             TTEECCCCSSEEEETTT--TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred             CCEeCCCCCCeEEcCCC--CEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence            99998877777665443  489999999999999999999999875 4456666655543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.65  E-value=1.3e-14  Score=137.93  Aligned_cols=252  Identities=17%  Similarity=0.189  Sum_probs=160.2

Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCcccccEEEEeeccCcccccccCCCceEecccCCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTP  172 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (616)
                      +.+|+...+.|.+.                            |.|. .+.|++  .+|..-  ........  ...+...
T Consensus        16 v~~G~~v~l~C~~~----------------------------~~p~-~v~W~~--~~g~~~--~~~~~~~~--~~~~~~~   60 (291)
T 2wim_A           16 LSVGESKFFTCTAI----------------------------GEPE-SIDWYN--PQGEKI--ISTQRVVV--QKEGVRS   60 (291)
T ss_dssp             EETTCCEEEEEEEE----------------------------SCCS-EEECBC--TTCCBC--CCBTTEEE--EEETTEE
T ss_pred             ecCCCcEEEEEEEe----------------------------CCCC-ceEEEC--CCCcCc--cCCCcEEE--ecCCCEE
Confidence            56788999999987                            4443 578877  433211  11121211  1123345


Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.++..+|.|.|+|.|.|..|.....    .+.+.. ..+|.+ ...+....+..|+.+.|.|.+.+.|.+.+.|++
T Consensus        61 ~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~----~~~l~v-~~~~~~-~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~  134 (291)
T 2wim_A           61 RLTIYNANIEDAGIYRCQATDAKGQTQEA----TVVLEI-YQKLTF-REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY  134 (291)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSSCEEEE----EEEEEE-ECCCBC-CSCCCSEEEETTSCEEECCCCBCSSCCEEEEEC
T ss_pred             EEEEccCCcccCEEEEEEEecccCceEEE----EEEEEe-cCCcce-EeCCCChhhcCCCCEEEEEEEccCCCCEEEEEE
Confidence            89999999999999999999987753211    122111 234444 333456788999999999999999999999999


Q ss_pred             CCeeecc--cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc--eeeEEEEEecCCCCCCCCc--cceeecCCe
Q psy12426        253 NDITIIS--KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD--KGTAKVTVLDIPSPPEGPL--KPSNITKSS  326 (616)
Q Consensus       253 ~~~~~~~--~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~--~~~~~l~v~~~p~~p~~~~--~~~~~~~~~  326 (616)
                      ++..+..  ..++.+...   ..|.|.++...|.|.|+|.+.|..+..  .....+.+..+|.....+.  ......+..
T Consensus       135 ~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~  211 (291)
T 2wim_A          135 HNEEVTTISDNRFAMLAN---NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEE  211 (291)
T ss_dssp             C----CBCCCSSEEECTT---SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCE
T ss_pred             CCccccccCCceEEEccC---CCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCe
Confidence            9887653  344444333   379999999999999999999987553  3445566666665432211  223345778


Q ss_pred             EEEEEeCCCCCCCCceEEEEEEEE--eCC-CCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426        327 CNLEWRAPRDDGGTDILHYVVEKM--DME-TGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       327 ~~l~W~~~~~~~~~~i~~y~v~~~--~~~-~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~  394 (616)
                      +.|.|.....    +...+.+.+.  ... ..... . ......+.|.++...+.+.|+|.|.|..|....
T Consensus       212 ~~l~C~~~g~----p~p~v~W~~~g~~~~~~~~~~-~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  276 (291)
T 2wim_A          212 MTFSCRASGS----PEPAISWFRNGKLIEENEKYI-L-KGSNTELTVRNIINSDGGPYVCRATNKAGEDEK  276 (291)
T ss_dssp             EEEECBCCCB----SCCEEEEEETTEECCCTTTEE-E-CSTTCEEEEESCCSTTCEEEEEEEEETTEEEEE
T ss_pred             EEEEEEeecC----CCCeEEEEECCEECcCCccEE-E-cCCccEEEEeeCCcccCEEEEEEEEECCCceee
Confidence            9999986432    2222222221  011 11111 1 123457899999999999999999999997543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.65  E-value=1.1e-15  Score=141.96  Aligned_cols=138  Identities=12%  Similarity=-0.028  Sum_probs=91.8

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCC-------CCCCCCCEEecccc------------CCCceeccCCcceEEEcC
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGE-------PSDPTAPHIARAKK------------VSPYINRDQLSDIKVRAG  231 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~-------~s~~~~~~~~~~~~------------~~P~~~~~~~~~~~v~~g  231 (616)
                      ...|.|.+++++|.|.|.|.|.|..|...       .+ ....+.+....            .++.+ ...+..+.+.+|
T Consensus        77 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~G  154 (257)
T 1f3r_B           77 QVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWG-PGTMVTVSSGGGGSGGGGSGGGGSDIKL-TQSPSLLSASVG  154 (257)
T ss_dssp             EEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEEC-CCEEEEECSSCCSSCCSSSCCCCCEECS-CEETSEECCCTT
T ss_pred             EEEEEECCCCcccCEEEEEEEcccccCccccccccccC-CceEEEEEeCCccccccccCCCccceEE-EccCCEEEEcCC
Confidence            34799999999999999999999865210       01 11123332211            01122 233456678899


Q ss_pred             CeEEEEEEEeeecCceeEEEE--CCeeec------------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        232 SNFEFDINVIGEPIPTKEWLC--NDITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       232 ~~~~l~c~~~~~p~~~~~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      +.+.|.|.+.+.+.+.+.|++  ++..+.            ...++.+...+....|.|.+++..|+|.|.|.|.|....
T Consensus       155 ~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  234 (257)
T 1f3r_B          155 DRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYT  234 (257)
T ss_dssp             CCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEE
T ss_pred             CCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCe
Confidence            999999999999989999999  554321            124565554455678999999999999999999996411


Q ss_pred             ceeeEEEEEecCC
Q psy12426        298 DKGTAKVTVLDIP  310 (616)
Q Consensus       298 ~~~~~~l~v~~~p  310 (616)
                      ......|.|...+
T Consensus       235 ~g~gt~l~V~~~~  247 (257)
T 1f3r_B          235 FGAGTKLELKAAE  247 (257)
T ss_dssp             ECCCCEECCSSSC
T ss_pred             ECCCEEEEEeCCC
Confidence            1223345554433

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.65  E-value=1.4e-15  Score=133.53  Aligned_cols=118  Identities=13%  Similarity=0.056  Sum_probs=91.7

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW  250 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W  250 (616)
                      ...|.|.+++.+|.|.|+|.+.|..|..       .+.+....        .+....+..|+.+.|.|.+.+.|.+.+.|
T Consensus        67 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~-------~l~V~~~~--------~~~~~~v~~g~~~~l~C~~~~~p~~~v~W  131 (184)
T 2ny1_B           67 NFPLIIKNLKIEDSDTYICEVEDQKEEV-------QLLVFGLT--------ANSDTHLLQGQSLTLTLESPPGSSPSVQC  131 (184)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTEEEEE-------EEEEEEEE--------ESSCSEEETTCCEEEEEECCTTCCCEEEE
T ss_pred             eEEEEEecCCHHHCEEEEEEEEcCCCcE-------EEEEEEec--------CCCCceeecCCCEEEEEEcCCCCCCEEEE
Confidence            4479999999999999999998875521       13322111        12345778999999999999999999999


Q ss_pred             EECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCC
Q psy12426        251 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP  313 (616)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p  313 (616)
                      ++++..+.       ..   ...|.|.++...|.|.|+|.|.|..+.....+.+.|...|.++
T Consensus       132 ~~~~~~~~-------~~---~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~  184 (184)
T 2ny1_B          132 RSPRGKNI-------QG---GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS  184 (184)
T ss_dssp             ECTTSCEE-------EE---SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC--
T ss_pred             EeCCCccc-------cC---ceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCCC
Confidence            99875441       11   2389999999999999999999988888889999998877643

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.65  E-value=2.4e-15  Score=139.53  Aligned_cols=141  Identities=11%  Similarity=0.007  Sum_probs=93.4

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc------------ccCCCceeccCCcceEEEcCCeEEEEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA------------KKVSPYINRDQLSDIKVRAGSNFEFDI  238 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~------------~~~~P~~~~~~~~~~~v~~g~~~~l~c  238 (616)
                      ...|.|.+++++|.|.|.|.|.|..+.....  ...+.+..            ...+|.+ ...+....+.+|+++.|.|
T Consensus        79 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~--~~~l~V~~~~~~~~~~~~~~~~~~~~v-~~~p~~~~v~~G~~v~L~C  155 (253)
T 3uzq_A           79 TAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQ--GTLVTVSAGGGGSGGGGSGGGGSELVM-TQTPASLAVSLGQRATISC  155 (253)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECSSSCCEECC--CEEEEECSSSCCCCC---------CCE-EEECSEEEECTTSCEEEEE
T ss_pred             eEEEEeCCCCcccCEEEEEEEeeCCccEECC--CcEEEEecCCccccccccCCCcccceE-ECcCCeEEEeCCCCEEEEE
Confidence            3469999999999999999999854432111  11233321            1123444 3445668899999999999


Q ss_pred             EEeeecCc----eeEEEEC--Ceeec------------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-e
Q psy12426        239 NVIGEPIP----TKEWLCN--DITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-K  299 (616)
Q Consensus       239 ~~~~~p~~----~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~  299 (616)
                      .+.+.+.+    .+.|+++  +..+.            ...++.....+....|.|.+++..|+|.|.|.|.|..+.. .
T Consensus       156 ~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg  235 (253)
T 3uzq_A          156 RASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFG  235 (253)
T ss_dssp             EESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBC
T ss_pred             EecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEEC
Confidence            99998876    9999984  22111            1245665555666789999999999999999999865433 3


Q ss_pred             eeEEEEEecCCCCCC
Q psy12426        300 GTAKVTVLDIPSPPE  314 (616)
Q Consensus       300 ~~~~l~v~~~p~~p~  314 (616)
                      ....|.|...+.+|.
T Consensus       236 ~gt~l~v~~~~~~~~  250 (253)
T 3uzq_A          236 GGTKLEIKRPLEHHH  250 (253)
T ss_dssp             CCEEEEECCC-----
T ss_pred             CCEEEEEcCCCCCcc
Confidence            455667766554443

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.65  E-value=6.4e-16  Score=148.94  Aligned_cols=250  Identities=10%  Similarity=0.041  Sum_probs=161.1

Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecC-cccccEEEEeeccCcccccccCCCceEecccCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGT-LLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDT  171 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (616)
                      +.+|+.-.+.|.+.                            +. |.+.+.|++  ++..+.   .....    ......
T Consensus        18 v~~G~~v~l~C~~~----------------------------~~~p~~~v~W~~--~~~~~~---~~~~~----~~~~~~   60 (317)
T 2y25_A           18 VTGECNVLLKCKVA----------------------------NIKKETHIVWYK--DEREIS---VDEKH----DFKDGI   60 (317)
T ss_dssp             EETTTEEEEEEEEE----------------------------SCCTTCEEEEEE--TTEEEC---CSCC---------CC
T ss_pred             ECCCCeEEEEEEEc----------------------------CCCCCCEEEEEE--CCeEcC---CCCcE----EEECCe
Confidence            56899999999987                            44 557799998  532221   11111    122344


Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEee---------
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG---------  242 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~---------  242 (616)
                      ..|.|.+++..|.|.|+|.|.|..|.....     +.+.. ...|.+. ..+....+..|+.+.|.|.+.+         
T Consensus        61 ~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~-----~~l~v-~~~~~~~-~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~  133 (317)
T 2y25_A           61 CTLLITEFSKKDAGIYEVILKDDRGKDKSR-----LKLVD-EAFKELM-MEVCKKIALSATDLKIQSTAEGIQLYSFVTY  133 (317)
T ss_dssp             EEEEETTCCSTTCSCEEEEEESSSCEEEEE-----ECCST-HHHHHHH-HHHHHHHHTCBCCCEEEECSSEEEEEEEBSS
T ss_pred             EEEEEccCCcccCeEEEEEEECCCCcEEEE-----EEEEE-ecCcccc-ccCCceecccCCCeEEEeeccccEEEEEecc
Confidence            689999999999999999999988753321     11111 0111111 1112233445666667776666         


Q ss_pred             -ecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEec-------------
Q psy12426        243 -EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD-------------  308 (616)
Q Consensus       243 -~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~-------------  308 (616)
                       .|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..|....+..+.+..             
T Consensus       134 ~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~  213 (317)
T 2y25_A          134 YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ  213 (317)
T ss_dssp             CCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCC
Confidence             688999999999998877888887777777899999999999999999999888877777665431             


Q ss_pred             ----CCCCCC----CCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC-----CCCEEEccc-cccceEEecccc
Q psy12426        309 ----IPSPPE----GPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME-----TGRWVPMGD-VSGTYTRAENLI  374 (616)
Q Consensus       309 ----~p~~p~----~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~-----~~~~~~~~~-~~~~~~~i~~L~  374 (616)
                          ....|.    .+-......+..+.|.|......    ...  +.|...+     ......... .....+.|.++.
T Consensus       214 ~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p----~p~--i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~  287 (317)
T 2y25_A          214 AAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP----PPE--VSWLKNEKALASDDHCNLKFEAGRTAYFTINGVS  287 (317)
T ss_dssp             HHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSS----CCE--EEEEESSSEECCCSSEEECCBTTTEEEEEEBSCC
T ss_pred             cccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCC----CCE--EEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCC
Confidence                001110    01123445677888888754222    122  2232211     112222222 233579999999


Q ss_pred             CCCeEEEEEEEEecCcCC
Q psy12426        375 EGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       375 ~~~~y~~~v~a~n~~g~~  392 (616)
                      ..+.+.|+|.|.|..|..
T Consensus       288 ~~d~G~Y~C~a~N~~g~~  305 (317)
T 2y25_A          288 TADSGKYGLVVKNKYGSE  305 (317)
T ss_dssp             STTCEEEEEEEEETTEEE
T ss_pred             HHHCEEEEEEEEeCCCeE
Confidence            999999999999999875

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.64  E-value=7.9e-16  Score=154.63  Aligned_cols=169  Identities=19%  Similarity=0.203  Sum_probs=120.2

Q ss_pred             CCeEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--
Q psy12426        376 GHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--  453 (616)
Q Consensus       376 ~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--  453 (616)
                      ...+.+.|.+.|.++...........     ..+|++|.++. ..++.+++.|+|.+|...++.++.+|.|+|+..+.  
T Consensus       305 ~~~Gs~~C~C~ng~~ra~~d~~~~~c-----t~pPsaP~nl~-~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~  378 (536)
T 3fl7_A          305 SPEGATSCECEEGFFRAPQDPASMPC-----TRPPSAPHYLT-AVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPES  378 (536)
T ss_dssp             CCTTCSSCEECTTCBCCTTCCTTSCC-----BCCCCCBSCEE-EECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-C
T ss_pred             CCCCccEEEEeccccccCCCcccccc-----ccCCCcccceE-EEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCC
Confidence            33456678888888876543222222     14788998885 46889999999999877777679999999987421  


Q ss_pred             -CceEe--------EeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeee
Q psy12426        454 -PWEKA--------CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQE  524 (616)
Q Consensus       454 -~~~~~--------~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~  524 (616)
                       .|...        .........++|.+|.|++.|.|+|+|.|..|.+.++..+..++.                     
T Consensus       379 ~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v---------------------  437 (536)
T 3fl7_A          379 GECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASV---------------------  437 (536)
T ss_dssp             CCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEE---------------------
T ss_pred             CcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEE---------------------
Confidence             22111        122235789999999999999999999999987543222222221                     


Q ss_pred             ecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCC
Q psy12426        525 YNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG  601 (616)
Q Consensus       525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~  601 (616)
                                                   .+.+.+|..+.....+.++|.|+|++|. ..||.|.+|+|.|+..+..
T Consensus       438 -----------------------------~T~~~~Ps~~~~~~~s~tSV~LsW~pP~-~~ng~I~~Y~V~y~~~~~~  484 (536)
T 3fl7_A          438 -----------------------------SINQTEPPKVRLEGRSTTSLSVSWSIPP-PQQSRVWKYEVTYRKKGDS  484 (536)
T ss_dssp             -----------------------------ECCSCCCCEEEEEECCC-CCEEEEECCT-TTTTTCSEEEEEEEEC--C
T ss_pred             -----------------------------eecccCCCCCceeeccCCeEEEEEECCc-CCCCcccEEEEEEEECCCC
Confidence                                         2456778877778889999999999885 4489999999999987654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.64  E-value=1.7e-15  Score=143.93  Aligned_cols=252  Identities=13%  Similarity=0.088  Sum_probs=160.0

Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCc-ccccEEEEeeccCcccccccCCCceEecccCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTL-LKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDT  171 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (616)
                      +..|+...+.|.+.                            |.+ .+.+.|++  .+|..-  ................
T Consensus        14 v~~G~~v~l~C~~~----------------------------~~~~~~~i~W~~--~~g~~~--~~~~~~~~~~~~~~~~   61 (291)
T 1qz1_A           14 ISVGESKFFLCQVA----------------------------GDAKDKDISWFS--PNGEKL--SPNQQRISVVWNDDDS   61 (291)
T ss_dssp             EETTCCEEEEEEES----------------------------SCCSCCEEEEEC--TTSCBC--CSSCSSEEEEEEETTE
T ss_pred             EeCCCeEEEEEEeC----------------------------CCCCCcEeEEEC--CCCeEC--ccCCceEEEEEcCCCe
Confidence            45788889999876                            443 46789987  544211  1111111111112345


Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL  251 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~  251 (616)
                      ..|.|.+++.+|.|.|+|.|.|..|.....    .+.+.. ..+|.+ ...+....+.+|+.+.|.|.+.+.|.+.+.|+
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~----~~~l~v-~~~~~~-~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~  135 (291)
T 1qz1_A           62 STLTIYNANIDDAGIYKCVVTAEDGTQSEA----TVNVKI-FQKLMF-KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWK  135 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSCEEEE----EEEEEE-ECCSEE-EECCSSEEEETTSCEEECCEEECSSCCEEEEE
T ss_pred             EEEEEecCCCCCCEEEEEEEEcCCCCeeEE----EEEEEe-eccccc-cCCCCcccccCCCeEEEEEEeccCCCCEEEEE
Confidence            589999999999999999999987642111    122211 234555 34456778999999999999999999999999


Q ss_pred             ECCeeeccc--CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc--eeeEEEEEecCCCCCCCC--ccceeecCC
Q psy12426        252 CNDITIISK--DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD--KGTAKVTVLDIPSPPEGP--LKPSNITKS  325 (616)
Q Consensus       252 ~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~--~~~~~l~v~~~p~~p~~~--~~~~~~~~~  325 (616)
                      +++..+...  .++.....   ..|.|.++...|.|.|+|.|.|..+..  .....+.+..+|.....+  .......+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  212 (291)
T 1qz1_A          136 HKGRDVILKKDVRFIVLSN---NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQ  212 (291)
T ss_dssp             ETTSCSSTTCCTTEEECTT---SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCC
T ss_pred             ECCEEcccCCCceEEEccC---CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCc
Confidence            999876533  33333322   379999999999999999999865433  344555565554322211  122334567


Q ss_pred             eEEEEEeCCCCCCCCceEEEEEEEEeCCC----CC----EEEccccccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        326 SCNLEWRAPRDDGGTDILHYVVEKMDMET----GR----WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       326 ~~~l~W~~~~~~~~~~i~~y~v~~~~~~~----~~----~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      .+.|.|......    ...  +.|...+.    ..    .... ......+.|.++...+.+.|+|.|.|..|..
T Consensus       213 ~v~l~C~~~g~p----~p~--i~W~~~g~~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  280 (291)
T 1qz1_A          213 SVTLVCDADGFP----EPT--MSWTKDGEPIENEEEDDEKHIF-SDDSSELTIRNVDKNDEAEYVCIAENKAGEQ  280 (291)
T ss_dssp             CEEEEEEEEEES----CCE--EEEEETTEECCCC--CCSSEEE-CTTSCEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eEEEEEEEEEeC----CCc--EEEEECCEECcCCCCCCcceEE-cCCCcEEEEEecChhcCEEEEEEEEeCCCce
Confidence            888998753221    112  22222111    00    0111 1224578999999999999999999999864

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.64  E-value=9.7e-15  Score=135.36  Aligned_cols=133  Identities=13%  Similarity=0.086  Sum_probs=91.7

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCC--CCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCc--
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS--DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--  246 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s--~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~--  246 (616)
                      ...|.|.+++++|.|.|+|.|.|..|.....  .....+.+.   .+|.+ ...+..+.+.+|++++|.|.+.+.+.+  
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~---~~~~v-~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  153 (256)
T 1nqb_A           78 TAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS---SDIEL-TQTPLSLPVSLGDQASISCRSSQSIVHSN  153 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC---CCCCE-EEECSEEEECTTCCEEEEEEESSCCBCTT
T ss_pred             EEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeec---ccccE-EecCcEEEEecCCcEEEEeEecCcccccc
Confidence            3479999999999999999999986631111  011112222   23443 334566788999999999999998875  


Q ss_pred             ---eeEEEE--CCeeec------------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEEe
Q psy12426        247 ---TKEWLC--NDITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVL  307 (616)
Q Consensus       247 ---~~~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v~  307 (616)
                         .+.|++  ++..+.            ...++..........|.|.+++..|+|.|+|.|.|..+.. .....|.|.
T Consensus       154 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  232 (256)
T 1nqb_A          154 GNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIK  232 (256)
T ss_dssp             SCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             cceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence               999999  554331            1345665555566789999999999999999999854322 233445554

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.64  E-value=8.6e-15  Score=136.13  Aligned_cols=141  Identities=8%  Similarity=0.025  Sum_probs=91.1

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCC-CCCCCCEEeccc-----------cCCCceeccCCcceEEEcCCeEEEEEE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEP-SDPTAPHIARAK-----------KVSPYINRDQLSDIKVRAGSNFEFDIN  239 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~-s~~~~~~~~~~~-----------~~~P~~~~~~~~~~~v~~g~~~~l~c~  239 (616)
                      ..|.|.+++++|.|.|.|.|.|..+.... ......+.+...           ..+|.+ ...+....+.+|++++|.|.
T Consensus        86 ~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~G~~v~L~C~  164 (257)
T 3gkz_A           86 VYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVL-TQSPAIMSASPGEKVTLTCS  164 (257)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCE-ECSCSEEEECTTCCEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEE-EcCCceEEEeCCCcEEEEEE
Confidence            37999999999999999999986322110 001111222221           112333 44456688999999999999


Q ss_pred             EeeecCc-eeEEEEC--Ceeec------------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEE
Q psy12426        240 VIGEPIP-TKEWLCN--DITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAK  303 (616)
Q Consensus       240 ~~~~p~~-~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~  303 (616)
                      +.+.+.+ .+.|++.  +..+.            ...++.....+....|.|.+++..|+|.|.|.|.+..... .....
T Consensus       165 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~  244 (257)
T 3gkz_A          165 ASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTK  244 (257)
T ss_dssp             ESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred             EccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEE
Confidence            9998887 9999983  22211            0245555555566789999999999999999998754332 23344


Q ss_pred             EEEecCCCCC
Q psy12426        304 VTVLDIPSPP  313 (616)
Q Consensus       304 l~v~~~p~~p  313 (616)
                      |.+...+..|
T Consensus       245 l~v~~~~~~~  254 (257)
T 3gkz_A          245 LEIKRAPHHH  254 (257)
T ss_dssp             EEECCC----
T ss_pred             EEEEeCCCCC
Confidence            5565544433

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.64  E-value=3.2e-15  Score=132.93  Aligned_cols=131  Identities=15%  Similarity=0.031  Sum_probs=77.5

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC---ceeE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI---PTKE  249 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~---~~~~  249 (616)
                      .|.|.+++..|.|.|+|.|.|..|....   ...+.+...+..|.+  . +. ..+.+|+.+.|.|.+.+.++   +.+.
T Consensus        55 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~---~~~l~V~~~p~~~~~--~-~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~  127 (202)
T 1vca_A           55 TLTMNPVSFGNEHSYLCTATCESRKLEK---GIQVEIYSFPKDPEI--H-LS-GPLEAGKPITVKCSVADVYPFDRLEID  127 (202)
T ss_dssp             EEEESSCCGGGCSEEEEEEEETTEEEEE---EEEEEEEBCCSCCEE--E-ES-SCEETTSCEEEEEEEEEEBSGGGEEEE
T ss_pred             EEEECcCCHHHCEEEEEEEEECCceEee---EEEEEEEeCCCCCEe--C-Cc-eEEcCCCCEEEEEEECCcCCCCCeEEE
Confidence            4566666666666677766665543111   111222211122222  1 11 45789999999999998744   3799


Q ss_pred             EEECCeeecccCcEEEE----ecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-------eeeEEEEEecCC
Q psy12426        250 WLCNDITIISKDRFKIV----NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-------KGTAKVTVLDIP  310 (616)
Q Consensus       250 W~~~~~~~~~~~~~~~~----~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-------~~~~~l~v~~~p  310 (616)
                      |++++..+.........    .......|.|.....++.|.|+|.|.|..|..       ..+..|.|..+|
T Consensus       128 W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P  199 (202)
T 1vca_A          128 LLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  199 (202)
T ss_dssp             EEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             EEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCC
Confidence            99999876532100000    00112356788888788999999999987752       345556666554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.63  E-value=2.5e-14  Score=133.47  Aligned_cols=233  Identities=9%  Similarity=0.016  Sum_probs=155.5

Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCccc-ccEEEEeeccCcccccccCCCceEecccCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLK-DSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDT  171 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (616)
                      +.+|+...+.|.+.                            +.|.+ .+.|++  ++..               +....
T Consensus        13 v~~G~~v~l~C~~~----------------------------~~~~~~~~~W~~--~g~~---------------~~~~~   47 (262)
T 3rjd_A           13 VFQEETVTLHCEVL----------------------------HLPGSSSTQWFL--NGTA---------------TQTST   47 (262)
T ss_dssp             EETTCCEEEEEECS----------------------------SCCCTTCEEEEE--TTEE---------------CSCCS
T ss_pred             eeCCCeEEEEEECC----------------------------CCCCCceEEEEE--CCEE---------------eeccC
Confidence            45788888999864                            44444 799998  4211               11234


Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE-eeecCceeEE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTKEW  250 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~-~~~p~~~~~W  250 (616)
                      ..|.|.++..+|.|.|+|.|.|..+...     ..+.+.   .+|..  ..+....+.+|+.+.|.|.+ .+.|.+.+.|
T Consensus        48 ~~l~i~~~~~~d~G~Y~C~~~~~~~s~~-----~~l~v~---~~~~~--~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W  117 (262)
T 3rjd_A           48 PSYRITSASVNDSGEYRCQRGLSGRSDP-----IQLEIH---RGWLL--LQVSSRVFTEGEPLALRCHAWKDKLVYNVLY  117 (262)
T ss_dssp             SEEEESSCCGGGCEEEEEEESSSCCCCC-----EEEEEE---CSSEE--EEESCSEEETTSCEEEEEEEGGGCCCEEEEE
T ss_pred             CeEEEecCCcccCeEEEEEEecCCcccc-----EEEEEe---ccceE--ecCCCeEEecCCeEEEEEEccCCCCCceEEE
Confidence            5899999999999999999987544321     123222   22222  22345678899999999999 6778889999


Q ss_pred             EECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCC--ccceeecCCeEE
Q psy12426        251 LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGP--LKPSNITKSSCN  328 (616)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~--~~~~~~~~~~~~  328 (616)
                      ++++..+...        .....|.|.++...|.|.|+|.+.|..+.......+.+...+.+|.-.  .......+..+.
T Consensus       118 ~~~g~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~  189 (262)
T 3rjd_A          118 YRNGKAFKFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVT  189 (262)
T ss_dssp             EETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEE
T ss_pred             EECCcccccc--------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEE
Confidence            9998876421        112379999999999999999999988777777888887654333210  112345678899


Q ss_pred             EEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        329 LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       329 l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      |.|....... .+...+.+.|...+. ..  ........+.|.++...+.+.|.|.|.|..|..
T Consensus       190 l~C~~~~~p~-~p~~~~~~~w~~~~~-~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          190 LSCETKLLLQ-RPGLQLYFSFYMGSK-TL--RGRNTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             EEEECCCCCC------EEEEEEETTE-EE--EEEESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             EEeEcccCCC-CCCccEEEEEEeCCc-Ee--cccCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence            9998643321 022223333333221 11  111334578899999999999999999999863

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.63  E-value=6.1e-16  Score=139.60  Aligned_cols=148  Identities=16%  Similarity=0.191  Sum_probs=113.0

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCC-CCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDL-KEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L-~p~t~Y~~~v~a~  486 (616)
                      .+|++|.++.+...+.+++.|+|.+|...+ . ..+|.|+|+..++.+..+.........++|.+| .+++.|.|+|.|.
T Consensus         6 ~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~-~-~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~t~Y~~~V~A~   83 (215)
T 1bqu_A            6 LPPEKPKNLSCIVNEGKKMRCEWDGGRETH-L-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE   83 (215)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCSCCS-S-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEE
T ss_pred             CCCCCCEeeEeEECCCCcEEEEcCCCCCCC-C-CceEEEEEEEcCCCccccccccCCcceEEEcCCccccccEEEEEEEE
Confidence            578899999998888899999999876543 3 478999998765432223334556789999999 9999999999999


Q ss_pred             cCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCCeEE
Q psy12426        487 NKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKPEAT  566 (616)
Q Consensus       487 n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~  566 (616)
                      |..|.+. +.... +....                                                ...|.+|.++.+.
T Consensus        84 n~~G~~~-s~~~~-~~~~~------------------------------------------------~~~p~pP~~~~~~  113 (215)
T 1bqu_A           84 NALGKVT-SDHIN-FDPVY------------------------------------------------KVKPNPPHNLSVI  113 (215)
T ss_dssp             ETTEEEE-CCCEE-ECGGG------------------------------------------------SEECCCCEEEEEE
T ss_pred             ecccCcc-CCcEE-ecccc------------------------------------------------cCcCCCCCceEEE
Confidence            9999876 22111 11100                                                1346788888776


Q ss_pred             ee--cCCcEEEEeeCCCCCCCCceeeeEEEEeecCCCCeEEccC
Q psy12426        567 DV--DKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITP  608 (616)
Q Consensus       567 ~~--~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~w~~~~~  608 (616)
                      ..  +.+++.|+|++|... ++.|.+|+|+|+..++..|..+..
T Consensus       114 ~~~~~~~sv~l~W~~p~~~-~~~i~~Y~v~y~~~~~~~~~~~~~  156 (215)
T 1bqu_A          114 NSEELSSILKLTWTNPSIK-SVIILKYNIQYRTKDASTWSQIPP  156 (215)
T ss_dssp             CC--CCSCEEEEEECCGGG-GTSCEEEEEEEEETTCSSCEECCG
T ss_pred             EecCCCceEEEEEeCCCCC-CcceEEEEEEEccCCCCCceEecc
Confidence            54  779999999988654 688999999999988889998753

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.63  E-value=4e-16  Score=158.51  Aligned_cols=238  Identities=13%  Similarity=0.063  Sum_probs=132.8

Q ss_pred             EecCCCeEEEEEEEeee-cC-CeeeeeeCCeeeee---------ccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426         13 KLSAGTTLKFDANIIGE-PV-PHVDWRAGGNPLNL---------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus        13 ~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~l~~---------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      .+.+|+.+.|.|.+.|. |. |.|+|+|++..+..         .|.|..                              
T Consensus       143 ~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~------------------------------  192 (457)
T 1hzh_H          143 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL------------------------------  192 (457)
T ss_dssp             CCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEE------------------------------
T ss_pred             cccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEE------------------------------
Confidence            36799999999999887 65 79999999975421         222211                              


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCC--------------------CCcceeecCCCc-----------e
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP--------------------TAPHIARAKKGK-----------C  130 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~--------------------~~~~~~~~~~p~-----------~  130 (616)
                         ...|.|.++...| |.|.|.|.|..+.......                    .....+....|.           .
T Consensus       193 ---~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~  268 (457)
T 1hzh_H          193 ---SSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPE  268 (457)
T ss_dssp             ---EEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCC
T ss_pred             ---EEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceE
Confidence               1368889998888 9999999997765211000                    001111111111           1


Q ss_pred             ee--eecCccc----ccEEEEeeccCcccccccCCCceEecccCCCCCeEEeec---ccCCC---eEEEEEEEEeCCCCC
Q psy12426        131 YH--LVGTLLK----DSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLD---LIEGN---QYEFRVLAVNKGGPG  198 (616)
Q Consensus       131 ~~--~~g~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~---l~~~~---~~~y~c~a~n~~g~~  198 (616)
                      +.  ..|.+.+    .+.|++  ++..+.    .........  .....|.|..   +...|   .|.|+|.|.|..+..
T Consensus       269 L~C~~~g~~p~p~~~~i~W~k--~~~~~~----~~~~~~~~~--~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~  340 (457)
T 1hzh_H          269 VTCVVVDVSHEDPEVKFNWYV--DGVEVH----NAKTKPREE--QYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA  340 (457)
T ss_dssp             EEEEEECCCTTCCCCEEEEEE--TTEEEC----CCEEEEEEE--CTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSS
T ss_pred             EEEEEEcccCCCCceEEEEEe--CCcccc----cccccccee--cCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCC
Confidence            11  2265443    799998  532221    110001111  1122344332   23444   899999999865432


Q ss_pred             CCCCCCCCEEe-ccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCc--eeEEEECCeeecccCcEEE--EecCC---
Q psy12426        199 EPSDPTAPHIA-RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEWLCNDITIISKDRFKI--VNDDK---  270 (616)
Q Consensus       199 ~~s~~~~~~~~-~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~--~~~W~~~~~~~~~~~~~~~--~~~~~---  270 (616)
                      ...   ..+.. .....+|.+....+....+..|+ +.|.|.+.|.+++  .+.|+++|..+........  ..++.   
T Consensus       341 ~~~---~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~  416 (457)
T 1hzh_H          341 PIE---KTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFL  416 (457)
T ss_dssp             CEE---EEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEE
T ss_pred             cce---EEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEE
Confidence            211   11111 02345666653333322333444 9999999997554  8999999988753322111  11111   


Q ss_pred             ceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        271 STKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       271 ~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      ...|.|......+.|.|+|.|.|..-
T Consensus       417 ~s~l~i~~~~~~~~g~YtC~a~n~~l  442 (457)
T 1hzh_H          417 YSKLTVDKSRWQQGNVFSCSVMHEAL  442 (457)
T ss_dssp             EEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEEEEEChHHccCCCeEEEEEEECCC
Confidence            12345555544678999999999643

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.63  E-value=3.5e-14  Score=136.50  Aligned_cols=259  Identities=8%  Similarity=-0.046  Sum_probs=153.2

Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCcccccEEEEeeccCcccccccCCCceEecccCCCCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTP  172 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (616)
                      +.+|+.-.+.|.+.                            |. .+.|.|++  ++..+.        .. ........
T Consensus        35 v~~G~~v~L~C~~~----------------------------~~-~~~~~W~k--~g~~~~--------~~-~~~~~~~~   74 (316)
T 3vh8_G           35 VPRGGHVTLRCHYR----------------------------HR-FNNFMLYK--EDRIHI--------PI-FHGRIFQE   74 (316)
T ss_dssp             EETTSCEEEEEEBT----------------------------TB-CCSEEEEE--SSCSSS--------CH-HHHCCBSS
T ss_pred             cCCCCCEEEEEEcc----------------------------CC-CceEEEEe--CCCccc--------ee-ecCCcceE
Confidence            45888899999875                            33 35689998  532211        00 11123455


Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCC--CCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT--APHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW  250 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~--~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W  250 (616)
                      .|.|.+++..|.|.|+|.|.|..+....+...  ..+.+.....+|.+... +.. .+.+|+.+.|.|.+. .+.+.+.|
T Consensus        75 ~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~-~~~-~v~~G~~v~L~C~~~-~~~~~~~w  151 (316)
T 3vh8_G           75 SFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAH-PGP-LVKSGERVILQCWSD-IMFEHFFL  151 (316)
T ss_dssp             CEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEE-SCS-EEETTCCEEEEEEES-SCCSEEEE
T ss_pred             EEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEec-CCC-ccCCCCeEEEEEcCC-CCCcEEEE
Confidence            89999999999999999998765432222222  22333333445665432 233 388999999999995 45678999


Q ss_pred             EECCeeecccCcE-EEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-----eeeEEEEEecCCCCCCCCc--cceee
Q psy12426        251 LCNDITIISKDRF-KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-----KGTAKVTVLDIPSPPEGPL--KPSNI  322 (616)
Q Consensus       251 ~~~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-----~~~~~l~v~~~p~~p~~~~--~~~~~  322 (616)
                      ++++..+...... ..........|.|.++...|.|.|+|.|.|..|..     +....+.+...+.+|.-..  .....
T Consensus       152 ~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~  231 (316)
T 3vh8_G          152 HKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQ  231 (316)
T ss_dssp             EETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCC
T ss_pred             EECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeec
Confidence            9998876432211 11112234589999999999999999999987742     4456667765444332100  01224


Q ss_pred             cCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEE-E----c-cccccceEEeccccCCCeEEEEEEEEecCcCCCCcc
Q psy12426        323 TKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV-P----M-GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLV  396 (616)
Q Consensus       323 ~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~-~----~-~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~  396 (616)
                      .+..+.|.|....     +...|.  |...+..... .    . .......+.|.++.  +.+.|+|.|.|..+...++.
T Consensus       232 ~G~~v~L~C~~~~-----~~~~~~--W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~  302 (316)
T 3vh8_G          232 AGESVTLSCSSRS-----SYDMYH--LSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSD  302 (316)
T ss_dssp             TTSCCEEEEEESS-----CCSEEE--EEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECC
T ss_pred             CCCcEEEEEECCC-----CCcEEE--EEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccC
Confidence            5778999998632     112233  3222221111 1    0 11123568888888  78999999999877544444


Q ss_pred             ccCCEEc
Q psy12426        397 CQSPITA  403 (616)
Q Consensus       397 ~s~~~~~  403 (616)
                      .+..+.+
T Consensus       303 ~S~~~~l  309 (316)
T 3vh8_G          303 PSDPLLV  309 (316)
T ss_dssp             CCCCEEC
T ss_pred             CCCcEEE
Confidence            4555544

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.63  E-value=5.7e-15  Score=141.90  Aligned_cols=241  Identities=12%  Similarity=0.039  Sum_probs=152.2

Q ss_pred             cCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccc--
Q psy12426        135 GTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK--  212 (616)
Q Consensus       135 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~--  212 (616)
                      |.|.+.+.|++  ++..+.   ........  ..+....|.|.++...|.|.|+|.|.|..|... +   ..+.+...  
T Consensus        28 ~~p~~~v~W~k--~~~~i~---~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s---~~l~v~~~~~   96 (312)
T 2y23_A           28 MTPKSEFSWSK--DYVSTE---DSPRLEVE--SKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-S---YLIDEEELKR   96 (312)
T ss_dssp             CCTTCCEEEEE--TTEECT---TCTTEEEE--EETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-E---EEECHHHHHH
T ss_pred             CCCCcEEEEEE--CCEECC---CCCCEEEE--EeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-E---EEEEEeeeee
Confidence            45667899999  532222   22222221  134446899999999999999999999887432 1   11221110  


Q ss_pred             -------cCCCceeccCCcceEEEcCCeEEEEEEEe-eecCceeEEEECCeeecccCcEEEEec--CCceEEEecCCCCC
Q psy12426        213 -------KVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVND--DKSTKLKVFDSKRG  282 (616)
Q Consensus       213 -------~~~P~~~~~~~~~~~v~~g~~~~l~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~l~~~  282 (616)
                             ..+|.+.........+..|+.+.|.|.+. +.|.+.+.|++++..+....++.+...  .....|.|.++...
T Consensus        97 ~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~  176 (312)
T 2y23_A           97 LLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE  176 (312)
T ss_dssp             HHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGG
T ss_pred             eecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcc
Confidence                   01555543333477889999999999999 889999999999999987777766653  44567999999999


Q ss_pred             CcEEEEEEEEcCCCCceeeEEEEE-------------------ecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceE
Q psy12426        283 DSGIYTLAVKNSWGTDKGTAKVTV-------------------LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDIL  343 (616)
Q Consensus       283 ~~g~y~c~a~n~~g~~~~~~~l~v-------------------~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~  343 (616)
                      |.|.|+|.+.+..+.......+..                   ...|.... ++......+..+.|.|..........+.
T Consensus       177 d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~v~~G~~~~l~C~~~~~p~~~~v~  255 (312)
T 2y23_A          177 DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIV  255 (312)
T ss_dssp             GCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE-EEEEEEETTTEEEEEEEEESCCSSCEEE
T ss_pred             cCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceee-cceEEEeCCCEEEEEEEEcCCCCCCEEE
Confidence            999999999875443332222210                   00111100 1223445678899999864332111222


Q ss_pred             EEEEEEEeCCCCCEEEcc----ccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        344 HYVVEKMDMETGRWVPMG----DVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       344 ~y~v~~~~~~~~~~~~~~----~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                           |...+. ......    ......+.|.++...+.+.|+|.|.|..|...
T Consensus       256 -----W~~~g~-~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~  303 (312)
T 2y23_A          256 -----WYKDER-EISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDK  303 (312)
T ss_dssp             -----EEETTE-EEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEE
T ss_pred             -----EeeCCE-ECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCcee
Confidence                 221110 000000    12235789999999999999999999998753

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}

Probab=99.63  E-value=2.9e-15  Score=133.48  Aligned_cols=145  Identities=21%  Similarity=0.417  Sum_probs=101.4

Q ss_pred             CCCCCEEEEec--CCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        412 RPGQPTVTDWG--KDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       412 ~p~~~~~~~~~--~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      +|.++.+..++  .+++.|+|.+|   .+..+.+|.|+|+..+.  .|... .+.++...++|.+|.|++.|.|+|+|.|
T Consensus         2 ~P~~l~v~~v~~~~~si~l~W~~p---~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~a~n   77 (201)
T 2ha1_A            2 GPVEVFITETPSQPNSHPIQWNAP---QPSHISKYILRWRPKNSVGRWKEA-TIPGHLNSYTIKGLKPGVVYEGQLISIQ   77 (201)
T ss_dssp             CCCEEECCSCSCCSSCEEEEEECC---SSTTCCEEEEEEEETTCSSCCEEE-EECTTCCEEEECSCCTTEEEEEEEEEEC
T ss_pred             CceeEEEEecCCCCCEEEEEEeCC---CCCCceEEEEEEEECCCCCceEEE-ecCCCccEEEecCCCCCCEEEEEEEEEe
Confidence            57788887777  89999999987   24479999999997654  55543 4566788999999999999999999999


Q ss_pred             CCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCC-----CCCC
Q psy12426        488 KGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPG-----KPSK  562 (616)
Q Consensus       488 ~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~P~~  562 (616)
                      ..|.|+++. ..+.+...  .+|...                                     .+....+.     .|.+
T Consensus        78 ~~G~~~~~~-~~~~t~~~--~~~~~~-------------------------------------~~~~~~~~~~p~~~~~~  117 (201)
T 2ha1_A           78 QYGHQEVTR-FDFTTTST--STPVTS-------------------------------------NTVTGETTPFSPLVATS  117 (201)
T ss_dssp             TTSCEEEEE-EEEEECCC--CCTTCS-------------------------------------CCCCCSCCCCCCSCSCC
T ss_pred             cccccCcee-EEEecCCC--CCCccc-------------------------------------ccccCCCCCCCCccCCc
Confidence            999987531 11111110  000000                                     00001111     2256


Q ss_pred             CeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCCCeE
Q psy12426        563 PEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWI  604 (616)
Q Consensus       563 ~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~w~  604 (616)
                      +++...+.++|.|+|.+|    ++.|.+|+|.|+..+.+.|.
T Consensus       118 l~~~~~~~~sv~l~W~~p----~~~i~~Y~v~~~~~~~~~~~  155 (201)
T 2ha1_A          118 ESVTEITASSFVVSWVSA----SDTVSGFRVEYELSEEGDEP  155 (201)
T ss_dssp             SSCCCCCSCCEEEECCCS----CTTEEEEEEEEEETTTCCCC
T ss_pred             eEEEecCCCeEEEEEeCC----CCCccEEEEEEEECCCCCce
Confidence            678888999999999988    47899999999976555543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.63  E-value=4.8e-15  Score=128.23  Aligned_cols=73  Identities=11%  Similarity=0.188  Sum_probs=56.0

Q ss_pred             eEEEcCCeEEEEEEEe-eecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC-ceeeEE
Q psy12426        226 IKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT-DKGTAK  303 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~-~~~~~~  303 (616)
                      ..+.+|+.+.|.|.+. +.|.+.+.|++++..+...        .....|.|.++...|.|.|+|.|.|..|. .+..+.
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~  166 (170)
T 3ry4_A           95 LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT  166 (170)
T ss_dssp             SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE--------SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             ceeecCCeEEEEEECCCCCCCceEEEEECCeEcccc--------CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEE
Confidence            3567899999999994 5566899999998875421        22348999999999999999999998875 344444


Q ss_pred             EEE
Q psy12426        304 VTV  306 (616)
Q Consensus       304 l~v  306 (616)
                      +.|
T Consensus       167 l~V  169 (170)
T 3ry4_A          167 ITV  169 (170)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.62  E-value=9.5e-15  Score=133.48  Aligned_cols=134  Identities=10%  Similarity=-0.028  Sum_probs=84.5

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.+++..|.|.|+|.+.|..+.+..+.. ..+.+......|.+... + ...+.+|++++|.|.+.+. .+.+.|+|
T Consensus        61 ~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~-~~L~V~~~~~~P~i~~~-p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k  136 (242)
T 1p6f_A           61 KFYIPDMNSRMAGQYSCIYRVGELWSEPSNL-LDLVVTEMYDTPTLSVH-P-GPEVISGEKVTFYCRLDTA-TSMFLLLK  136 (242)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEECCCCCC-EEEEEECCSCCCEEEEE-S-CSEEETTCEEEEEEECTTS-CSEEEEEE
T ss_pred             EEEecCCCcccCeEEEEEEecCCccccCCcc-eEEEeecccCCCceEcc-C-CCccCCCCcEEEEEecCCC-CCEEEEEE
Confidence            4666677777777777777665443322221 12333322334555322 2 3468899999999998764 46899999


Q ss_pred             CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC---CCceeeEEEEEecCCCCCC
Q psy12426        253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW---GTDKGTAKVTVLDIPSPPE  314 (616)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~---g~~~~~~~l~v~~~p~~p~  314 (616)
                      ++..+..    ..........|.|.+++..|.|.|+|.+.|..   ...+....|.|...+..|.
T Consensus       137 ~g~~~~~----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~P~  197 (242)
T 1p6f_A          137 EGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIENTS  197 (242)
T ss_dssp             CSSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC------
T ss_pred             CCCccCc----cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCCCCc
Confidence            9876543    12234455689999999999999999999864   2345667788877655444

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.62  E-value=2.2e-15  Score=135.87  Aligned_cols=129  Identities=7%  Similarity=0.016  Sum_probs=82.9

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccc-cCCCceeccCCcceEEEcCCeEEEEEEEeeec-C-ce
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDINVIGEP-I-PT  247 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~-~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p-~-~~  247 (616)
                      ...|.|.+++++|.|.|+|.|.|..|..........+.+... ..+|.+.... ....+..|+.+.|.|.+.+.+ . +.
T Consensus        69 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~~~~~~~g~~v~l~C~~~g~~p~~~~  147 (213)
T 3mj8_L           69 MATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFP-PSSEELKTNQATLVCMINGFYPADVA  147 (213)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEEC-CCHHHHTTTEEEEEEEEEEEBSSCCE
T ss_pred             EEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccC-CCcccccCCcEEEEEEeeceeCCCeE
Confidence            347899999999999999999988762000011122333322 2456554322 222233799999999999863 3 49


Q ss_pred             eEEEECCeeecccCcE--EEEecC---CceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        248 KEWLCNDITIISKDRF--KIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       248 ~~W~~~~~~~~~~~~~--~~~~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      +.|++++..+..+...  .....+   ....|.|.++...|.|.|+|.|.|..+....
T Consensus       148 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  205 (213)
T 3mj8_L          148 VTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEK  205 (213)
T ss_dssp             EEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEE
T ss_pred             EEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEe
Confidence            9999999987542110  000111   0136899999999999999999998754443

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.62  E-value=2e-14  Score=135.48  Aligned_cols=135  Identities=10%  Similarity=0.083  Sum_probs=91.5

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCC--CCCCCEEecccc------------CCCceeccCCcceEEEcCCeEEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS--DPTAPHIARAKK------------VSPYINRDQLSDIKVRAGSNFEF  236 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s--~~~~~~~~~~~~------------~~P~~~~~~~~~~~v~~g~~~~l  236 (616)
                      ...|.|.+++++|.|.|.|.+.|..|.....  .....+.+...+            .+|.+ ...+..+.+.+|++++|
T Consensus       104 ~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~G~~v~L  182 (282)
T 1qok_A          104 TAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVL-TQSPAIMSASPGEKVTI  182 (282)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCE-EEECSEEEECTTCCEEE
T ss_pred             eEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEE-ecCCCEEEEcCCCcEEE
Confidence            3479999999999999999999987621100  011123332221            12333 33455678999999999


Q ss_pred             EEEEeeecCceeEEEE--CCeeec------------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eee
Q psy12426        237 DINVIGEPIPTKEWLC--NDITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGT  301 (616)
Q Consensus       237 ~c~~~~~p~~~~~W~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~  301 (616)
                      .|.+.+.+ +.+.|+|  ++..+.            ...++.+...+....|.|.+++..|+|.|.|.|.|..+.. ...
T Consensus       183 ~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~g  261 (282)
T 1qok_A          183 TCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAG  261 (282)
T ss_dssp             EEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCC
T ss_pred             EEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCC
Confidence            99999999 8999999  554331            1356665555566789999999999999999998853322 234


Q ss_pred             EEEEEe
Q psy12426        302 AKVTVL  307 (616)
Q Consensus       302 ~~l~v~  307 (616)
                      ..|.|.
T Consensus       262 t~l~V~  267 (282)
T 1qok_A          262 TKLELK  267 (282)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            455554

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.62  E-value=2.1e-15  Score=135.94  Aligned_cols=125  Identities=8%  Similarity=-0.067  Sum_probs=85.1

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEee-ecCc-eeE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIP-TKE  249 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-~p~~-~~~  249 (616)
                      ..|.|.+++.+|.|.|+|.|.|..|.....  ...+.+.....+|.+....+... +..|+.+.|.|.+.+ .|.+ .+.
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~--~~~l~V~~~~~~p~v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~  147 (213)
T 3d9a_L           71 FTLSINSVETEDFGMYFCQQSNSWPYTFGG--GTKLEIKRADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVK  147 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECC--CEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECCCChhhCEEEEEeeecCCcceeCC--CEEEEEecCCCCceeEeECCChh-hcCCCcEEEEEEEeeecCCceEEE
Confidence            379999999999999999999876642211  11244443344666643332222 236889999999988 5554 899


Q ss_pred             EEECCeeecccCcEEE--EecC-C----ceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        250 WLCNDITIISKDRFKI--VNDD-K----STKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       250 W~~~~~~~~~~~~~~~--~~~~-~----~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      |++++..+........  .... +    ...|.|.++...|.|.|+|.|.|......
T Consensus       148 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~  204 (213)
T 3d9a_L          148 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP  204 (213)
T ss_dssp             EEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred             EEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCc
Confidence            9999998765411111  1111 1    23899999999999999999999765543

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.61  E-value=2.5e-14  Score=132.87  Aligned_cols=124  Identities=11%  Similarity=0.044  Sum_probs=86.2

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCC----------CCCCCCCCCCCEEeccccC------------CCceeccCCcceEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKG----------GPGEPSDPTAPHIARAKKV------------SPYINRDQLSDIKV  228 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~----------g~~~~s~~~~~~~~~~~~~------------~P~~~~~~~~~~~v  228 (616)
                      ...|.|.+++++|.|.|.|.|.|..          +..... ....+.+.....            +|.+ ...+..+.+
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v  161 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWG-KGTTVIVSSGGGGSGGGGSGGGGSEIVL-TQAPGTLSL  161 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEEC-CCEEEEECSCC----------CCCCCCE-EEECSEEEE
T ss_pred             EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEEC-CceEEeecCCcccccccccCCCcceeEE-EecCCeEEE
Confidence            3479999999999999999998861          111111 111233322111            2333 444667889


Q ss_pred             EcCCeEEEEEEEeeecC-ceeEEEEC--Ceeec------------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        229 RAGSNFEFDINVIGEPI-PTKEWLCN--DITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       229 ~~g~~~~l~c~~~~~p~-~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|++++|.|.+.+.+. +.+.|++.  +..+.            ...++.+...+....|.|.+++..|+|.|.|.|.|
T Consensus       162 ~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  241 (256)
T 3juy_B          162 SPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYG  241 (256)
T ss_dssp             CTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECC
T ss_pred             eCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEee
Confidence            99999999999999886 89999983  22211            23566666566667899999999999999999988


Q ss_pred             CCC
Q psy12426        294 SWG  296 (616)
Q Consensus       294 ~~g  296 (616)
                      ..+
T Consensus       242 ~~~  244 (256)
T 3juy_B          242 ASS  244 (256)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.61  E-value=1.9e-14  Score=132.06  Aligned_cols=124  Identities=15%  Similarity=0.108  Sum_probs=82.6

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCC--CCCCCEEeccccC---C------CceeccCCcceEEEcCCeEEEEEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS--DPTAPHIARAKKV---S------PYINRDQLSDIKVRAGSNFEFDIN  239 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s--~~~~~~~~~~~~~---~------P~~~~~~~~~~~v~~g~~~~l~c~  239 (616)
                      ...|.|.+++++|.|.|+|.|.|..|.....  .....+.+.....   +      +.+ ...+..+.+.+|+.+.|.|.
T Consensus        72 ~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v-~~~p~~~~v~~G~~v~L~C~  150 (238)
T 2p1y_A           72 NFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQV-RQSPQSLTVWEGETAILNCS  150 (238)
T ss_dssp             BCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCC-EEECSEEEEETTSCEEEEEE
T ss_pred             eEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeE-EccCceEEEeCCCeEEEEEE
Confidence            3479999999999999999999986531110  0011122221110   0      122 23355678999999999999


Q ss_pred             EeeecCceeEEEECCe-----ee---------cccCcEEEE--ecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        240 VIGEPIPTKEWLCNDI-----TI---------ISKDRFKIV--NDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       240 ~~~~p~~~~~W~~~~~-----~~---------~~~~~~~~~--~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      +.+.|.+.+.|++++.     .+         ....++.+.  .......|.|.+++..|+|.|+|.|.|..
T Consensus       151 ~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          151 YENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            9999999999999641     11         123455554  23445789999999999999999999974

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.61  E-value=1.2e-14  Score=117.01  Aligned_cols=105  Identities=23%  Similarity=0.422  Sum_probs=87.1

Q ss_pred             cCCEEccCCCCCCCCCCCCEEE-EecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCC
Q psy12426        398 QSPITAKDPFGRPDRPGQPTVT-DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLK  474 (616)
Q Consensus       398 s~~~~~~~~~~~p~~p~~~~~~-~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~  474 (616)
                      +..+.+.+....|++|.++.+. .++.+++.|+|.+|..+++.+|.+|.|+|+..+.  .|.....  +....+++.+|.
T Consensus         6 S~~~~~~t~~~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~v~~L~   83 (120)
T 2crm_A            6 SGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS--GATREHLCDRLN   83 (120)
T ss_dssp             CSCCSCCSCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEEC--SSCSEEEECSCC
T ss_pred             cCCEEEEeCCCCCCCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCEEEEe--ccccEEEECCCC
Confidence            4455566677889999999887 7889999999998877767789999999998764  6776533  457899999999


Q ss_pred             CCCeEEEEEEEEcCCCCCCCCCCCCCEEec
Q psy12426        475 EGEEYEFRVIAVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       475 p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~  504 (616)
                      |++.|.|||+|+|..|.|++|......|..
T Consensus        84 p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~  113 (120)
T 2crm_A           84 PGCFYRLRVYCISDGGQSAVSESLLVQTPA  113 (120)
T ss_dssp             TTSCEEEEEEEEETTEECCCCCCCCCCCCC
T ss_pred             CCCEEEEEEEEEcCCccCCCcccEEEEcCC
Confidence            999999999999999999999877665543

>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*

Probab=99.61  E-value=2.9e-14  Score=139.58  Aligned_cols=201  Identities=11%  Similarity=-0.027  Sum_probs=106.0

Q ss_pred             cCCCCCCcEEEEEEEEcC----CCCc--e-eeEEEEEec----CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEE
Q psy12426        277 FDSKRGDSGIYTLAVKNS----WGTD--K-GTAKVTVLD----IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHY  345 (616)
Q Consensus       277 ~~l~~~~~g~y~c~a~n~----~g~~--~-~~~~l~v~~----~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y  345 (616)
                      ..+.....|.|++.|.|.    .|.+  + .+...+...    +|.+|.+ +.+.......+.++|+++...  .....|
T Consensus        93 ~~~~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~n-l~C~~~~~~~l~csW~p~~~~--~~~~~Y  169 (380)
T 3lb6_C           93 DGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQD-MDCVYYNWQYLLCSWKPGIGV--LLDTNY  169 (380)
T ss_dssp             EECCTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEE-EEEEEETTTEEEEEEECC--------CCE
T ss_pred             EeecCCCceEEEEEeecCCcccCCccCccccchhhcccCCCCCCCCCCcE-eEEEECCCcEEEEEEcCCCCC--CCCccE
Confidence            344557899999999953    3433  2 232333222    2334444 666677888999999975432  346789


Q ss_pred             EEEEEeCCCCCEEEccc-----cccceEEec--cccCCCeEEEEEEEEecCcCCCCccccCCEEccCC-CCCCCCCCCCE
Q psy12426        346 VVEKMDMETGRWVPMGD-----VSGTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP-FGRPDRPGQPT  417 (616)
Q Consensus       346 ~v~~~~~~~~~~~~~~~-----~~~~~~~i~--~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~-~~~p~~p~~~~  417 (616)
                      .+.++..+...+..+..     .....+.+.  ++...+.|.++|.|.|..|.+...    .+.+... ..+|++|.++.
T Consensus       170 ~l~y~~~~~~~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~s~----~~~~~~~~~v~p~pP~~l~  245 (380)
T 3lb6_C          170 NLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRSS----YFTFQLQNIVKPLPPVYLT  245 (380)
T ss_dssp             EEEEECTTCSSCEECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CCCE----EEEECGGGSCCCCCCEEEE
T ss_pred             EEEEEECCCCccccCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeeccc----cEEEcHHHcccCCCCceEE
Confidence            99998755444444321     122245555  567788999999999988865432    1223222 24688888988


Q ss_pred             EEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCC-CCCCCeEEEEEEEEcC
Q psy12426        418 VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD-LKEGEEYEFRVIAVNK  488 (616)
Q Consensus       418 ~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~-L~p~t~Y~~~v~a~n~  488 (616)
                      +...+.+++.|+|.+|....+..+.+|+|+|+..+..|......    ..+.|.+ |.|++.|.|+|+|...
T Consensus       246 v~~~~~~~l~l~W~~P~~~~~~~~l~Yev~y~~~~~~w~~~~~~----~~~~l~~~L~p~t~Y~~qVRa~~~  313 (380)
T 3lb6_C          246 FTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTATVE----NETYTLKTTNETRQLCFVVRSKVN  313 (380)
T ss_dssp             EC-------CEEEECCSSSCCSTTEEEEECC--------CCEES----SSCC------------CCEEEEEC
T ss_pred             EEEcCCCeEEEEECCCCCCCCcceEEEEEEEEeCCCCceEeccc----ceEEEeCccCCCcEEEEEEEEEEc
Confidence            88777889999999886544446889999999865466543321    2467888 9999999999999943

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.60  E-value=2.4e-15  Score=146.03  Aligned_cols=255  Identities=17%  Similarity=0.143  Sum_probs=115.5

Q ss_pred             CcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecC-cccccEEEEeeccCcccccccCCCceEecccCCC
Q psy12426         92 DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGT-LLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD  170 (616)
Q Consensus        92 ~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (616)
                      .+.+|+...+.|.+.                            |. |.+.+.|++  ++..+.   ....      ....
T Consensus        19 ~v~~G~~v~l~C~~~----------------------------~~~p~~~v~W~k--~g~~~~---~~~~------~~~~   59 (334)
T 1ry7_B           19 VFGSGDAVELSCPPP----------------------------GGGPMGPTVWVK--DGTGLV---PSER------VLVG   59 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEecCCcEEEEeeCC----------------------------CCCCCcceEEEE--CCeeCC---Cccc------EEec
Confidence            355788888888876                            33 456799998  532221   1111      1113


Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecccc-------------------CCCceecc---CCcceEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK-------------------VSPYINRD---QLSDIKV  228 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~-------------------~~P~~~~~---~~~~~~v  228 (616)
                      ...|.|.+++..|.|.|+|.|.|. |.... ..  .+.+....                   .+|.+...   ......+
T Consensus        60 ~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~-~~--~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v  135 (334)
T 1ry7_B           60 PQRLQVLNASHEDSGAYSCRQRLT-QRVLC-HF--SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAV  135 (334)
T ss_dssp             ---------------------------------------------------------------CCCCSCCTTCCCCEEEE
T ss_pred             cceEEEeecccccCEEEEEEEEeC-CeEEE-EE--EEEEeccCccccccccccccccccccCCCCEEeccccccceeEEe
Confidence            458999999999999999999998 54221 11  12222111                   24444311   1234678


Q ss_pred             EcCCeEEEEEEEeeecCceeEEEECCeeecccCcE-EEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        229 RAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF-KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       229 ~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      ..|+.+.|.|.+.+.|.+.+.|++++..+....++ ..........|.|.++...|.|.|+|.|.|..|.......+.+.
T Consensus       136 ~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  215 (334)
T 1ry7_B          136 PAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL  215 (334)
T ss_dssp             ETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEe
Confidence            89999999999999999999999999887654432 11223345689999999999999999999999888888888887


Q ss_pred             cCCC-CCCC----CccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEe--CCC------CCEEEcc--------ccccc
Q psy12426        308 DIPS-PPEG----PLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMD--MET------GRWVPMG--------DVSGT  366 (616)
Q Consensus       308 ~~p~-~p~~----~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~--~~~------~~~~~~~--------~~~~~  366 (616)
                      ..+. +|.-    +.......+..+.|.|.....    +...+.+.+..  .+.      .......        .....
T Consensus       216 ~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~----p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (334)
T 1ry7_B          216 ERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSD----AQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE  291 (334)
T ss_dssp             CCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCS----SCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCC
T ss_pred             cCCCCCCceEecCCCceEEeCCCCEEEEEEEecC----CCCeEEEEECCcCCCccccCCCCeeEEEeecCcccccccccc
Confidence            6432 2211    112344567789999986332    22233332210  100      0000000        01123


Q ss_pred             eEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        367 YTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       367 ~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      .+.|.++...+.+.|+|.|.|..|...
T Consensus       292 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~  318 (334)
T 1ry7_B          292 VLSLHNVTFEDAGEYTCLAGNSIGFSH  318 (334)
T ss_dssp             CEEECSCCTTSCSEEEEEEEESSCCEE
T ss_pred             EEEEccCCHHHCEEEEEEEeCCCCeEE
Confidence            699999999999999999999998754

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.60  E-value=2.4e-14  Score=132.98  Aligned_cols=137  Identities=12%  Similarity=0.034  Sum_probs=92.2

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCC--CCCCCCCCCCEEeccc------------c-CCCceeccCCcceEEEcCCeEEE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGG--PGEPSDPTAPHIARAK------------K-VSPYINRDQLSDIKVRAGSNFEF  236 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g--~~~~s~~~~~~~~~~~------------~-~~P~~~~~~~~~~~v~~g~~~~l  236 (616)
                      ..|.|.+++++|.|.|.|.|.|..+  ...... ...+.+...            . .+|.+ ...+..+.+.+|++++|
T Consensus        81 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~-~~~L~V~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~G~~v~L  158 (256)
T 3umt_A           81 AYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQ-GTTVTVSSGGGGSGGGGSGGGGSTDIQL-TQSPSSLSASLGERVSI  158 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCSTTCCSCEECC-CEEEEECC---------------CCCCE-EEECSEEEECTTCCEEE
T ss_pred             EEEEECCCCcccCEEEEEEEccCCCccccEECC-CEEEEEcCCCccccCcccCCCCccccEE-EcCCCeEEEECCCCEEE
Confidence            3699999999999999999988722  111111 112332211            0 14444 34456688999999999


Q ss_pred             EEEEeeecCceeEEEEC--Ceeec------------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eee
Q psy12426        237 DINVIGEPIPTKEWLCN--DITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGT  301 (616)
Q Consensus       237 ~c~~~~~p~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~  301 (616)
                      .|.+.+.+.+.+.|++.  +..+.            ...++.....+....|.|.+++..|+|.|.|.+.|..+.. ...
T Consensus       159 ~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~g  238 (256)
T 3umt_A          159 TCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGG  238 (256)
T ss_dssp             EEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCC
T ss_pred             EEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCC
Confidence            99999999889999984  22211            1356666666667789999999999999999999854432 334


Q ss_pred             EEEEEecCC
Q psy12426        302 AKVTVLDIP  310 (616)
Q Consensus       302 ~~l~v~~~p  310 (616)
                      ..|.|...+
T Consensus       239 t~L~V~~~~  247 (256)
T 3umt_A          239 TKLEIKRAA  247 (256)
T ss_dssp             EEEEEC---
T ss_pred             EEEEEECCC
Confidence            556665443

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.60  E-value=2.1e-14  Score=127.80  Aligned_cols=116  Identities=9%  Similarity=0.014  Sum_probs=76.8

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCC---CCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGP---GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE  249 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~---~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~  249 (616)
                      .|.|.+++..|.|.|+|.|.|..+.   +..+ ....+.+.....+|.+.... . ..+.+|+.++|.|.+.+ +.+.+.
T Consensus        64 ~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s-~~~~l~V~~~~~~p~i~~~p-~-~~v~~G~~v~L~C~~~~-~~~~~~  139 (201)
T 1nkr_A           64 NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS-DPLDIVIIGLYEKPSLSAQP-G-PTVLAGENVTLSCSSRS-SYDMYH  139 (201)
T ss_dssp             EEEESSCCGGGCEEEEEEEEBTTBTTCCCCCC-CCEEEEEECSSCCCEEEEES-C-SEECTTCEEEEEEEESS-CCSEEE
T ss_pred             EEEeccCCcccCeEEEEeEecCCCCccccCCC-CCEEEEeeccCCCCceecCC-C-CccCCCCeEEEEEeCCC-CCceEE
Confidence            5778888888888888888765321   1111 11223443334456664332 2 46889999999999886 567899


Q ss_pred             EEECCeeecccCcEEEEecC-CceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        250 WLCNDITIISKDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       250 W~~~~~~~~~~~~~~~~~~~-~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      |+|++..+...........+ ....|.|.+++  |.|.|+|.|.+.
T Consensus       140 w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          140 LSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             EEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             EEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            99999766432211111111 24589999998  999999999875

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.60  E-value=1.1e-14  Score=132.24  Aligned_cols=135  Identities=12%  Similarity=0.142  Sum_probs=92.1

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE-eeecCceeE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTKE  249 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~-~~~p~~~~~  249 (616)
                      ...|.|.+++.+|.|.|+|.+.+.. ...   ....+.+......|.+....  ...+..|+.+.|.|.+ .+.|.+.+.
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~---~~~~l~V~~~~~~p~i~~~~--~~~v~~G~~~~l~C~~~~g~P~~~v~  144 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQD-FDS---AAVSLQVAAPYSKPSMTLEP--NKDLRPGNMVTITCSSYQGYPEAEVF  144 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEECC-CCC---CCCCCCCCBCCCCCEEECCC-------CCSEEEEEEEEEEEBSCCEEE
T ss_pred             eEEEEECCcccccCEEEEEEEEeCC-Cce---EEEEEEEEcCCCCCcEEeCC--CceecCCceEEEEEecccccCCCeEE
Confidence            4579999999999999999999853 221   12223333333456554322  3467789999999999 788999999


Q ss_pred             EEEC-CeeecccCcEEEEec--CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCC
Q psy12426        250 WLCN-DITIISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS  311 (616)
Q Consensus       250 W~~~-~~~~~~~~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~  311 (616)
                      |+++ +..+...........  +....|.|.++...|.|.|+|.|.|..|.....+.+.+..+|-
T Consensus       145 W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  209 (222)
T 4i0k_A          145 WKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPL  209 (222)
T ss_dssp             EECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC---
T ss_pred             EEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcc
Confidence            9994 444433222222222  2234578999999999999999999999999999999887664

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.60  E-value=9.8e-16  Score=120.50  Aligned_cols=97  Identities=36%  Similarity=0.621  Sum_probs=83.1

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .+|.+|..+.+..++.+++.|+|.+|..+++.+|.+|.|+|+..++ .|............+++.+|.|++.|.|||+|+
T Consensus         9 ~~p~~P~~P~v~~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   88 (112)
T 1bpv_A            9 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAK   88 (112)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEE
T ss_pred             CCCCCCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeecccCccCEEEECCCCCCCEEEEEEEEE
Confidence            5788888899999999999999998888888889999999998765 787765445567899999999999999999999


Q ss_pred             cCCCC-CCCCCCCCCEEec
Q psy12426        487 NKGGP-GEPSKASAPVTCK  504 (616)
Q Consensus       487 n~~G~-g~~s~~~~~~~~~  504 (616)
                      |..|. |++|..+..+++.
T Consensus        89 N~~G~~s~~S~~~~~~t~~  107 (112)
T 1bpv_A           89 NAAGAISPPSEPSDAITCR  107 (112)
T ss_dssp             CTTSCEEEEEEEEEEECSC
T ss_pred             ECCCCCCCCCCCCCCEEeC
Confidence            99997 9988766655544

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=3.7e-15  Score=121.04  Aligned_cols=115  Identities=20%  Similarity=0.297  Sum_probs=93.6

Q ss_pred             EEEEEecCcCCCCccccCCEEccCCCCCCC-CCCCCEEEEecCCeEEEEecCCCCC-CCCcceeEEEEEeeCCC-CceEe
Q psy12426        382 RVKAVNKIGESLPLVCQSPITAKDPFGRPD-RPGQPTVTDWGKDHVDLEWTPPKKD-GGSPISQYIIEKKPKYG-PWEKA  458 (616)
Q Consensus       382 ~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~-~p~~~~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~i~~~~~~~-~~~~~  458 (616)
                      +|.|.|..|.+..   +..+.+.+....|. +|.++++...+.+++.|+|.+|..+ .++.|.+|.|+|+..+. .|...
T Consensus         3 ~V~A~n~~G~g~~---s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~   79 (124)
T 2ed9_A            3 SGSSGNRYGPGVS---TDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMET   79 (124)
T ss_dssp             SCCCCCCCCCCCC---CCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCCEEE
T ss_pred             eEEEEeCCccCCC---CCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcceEE
Confidence            5778899998876   45556666667777 6779999999999999999988652 45579999999998776 55432


Q ss_pred             EeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCE
Q psy12426        459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPV  501 (616)
Q Consensus       459 ~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~  501 (616)
                        .......++|.+|.|++.|.|+|+|.|..|.|++|....+.
T Consensus        80 --~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~  120 (124)
T 2ed9_A           80 --LEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAE  120 (124)
T ss_dssp             --ECSSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEEE
T ss_pred             --ecCCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEE
Confidence              55678899999999999999999999999999988765543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.60  E-value=6.6e-15  Score=132.28  Aligned_cols=124  Identities=9%  Similarity=-0.025  Sum_probs=82.0

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCc-eeE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-TKE  249 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~-~~~  249 (616)
                      ..|.|.+++++|.|.|+|.|.|..+.....  ...+.+.....+|.+....+... +..|+.+.|.|.+.+. |.+ .+.
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~--~~~l~V~~~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~  146 (210)
T 1lk3_L           70 FTLTIDPVEADDTAIYFCQQSWNGPLTFGA--GTKLELKRADAAPTVSIFPPSTE-QLATGGASVVCLMNNFYPRDISVK  146 (210)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECC--CEEEEECCCCBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECCCCHHHCeEEEEEEEcCCCceeCC--CEEEEEcCCCcCCeEEEECCchh-hccCCcEEEEEEEEeEeCCceEEE
Confidence            378999999999999999998876532111  11234333334566643332222 2378999999999975 443 899


Q ss_pred             EEECCeeeccc-Cc-EEEEecCC-----ceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        250 WLCNDITIISK-DR-FKIVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       250 W~~~~~~~~~~-~~-~~~~~~~~-----~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      |++++..+... .. .......+     ...|.|.++...|.|.|+|.|.|.....
T Consensus       147 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          147 WKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             EEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             EEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            99999987544 11 11111111     1378999999999999999999975544

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.60  E-value=1.2e-15  Score=137.65  Aligned_cols=129  Identities=18%  Similarity=0.149  Sum_probs=92.3

Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE-eeecCcee
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTK  248 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~-~~~p~~~~  248 (616)
                      ....|.|.+++.+|.|.|+|.|.|..|.....   ..+.+.   .+|.+.. .+....+..|+.+.|.|.+ .+.|.+.+
T Consensus        82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~---~~l~V~---~~p~~~~-~~~~~~~~~g~~v~l~C~~~~g~p~~~v  154 (214)
T 3jz7_A           82 GDASINVTNLQLSDIGTYQCKVKKAPGVANKK---FLLTVL---VKPSGTR-CFVDGSEEIGNDFKLKCEPKEGSLPLQF  154 (214)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEE---EEEEEE---CCCBSCE-EEEESCCBTTCCEEEEEECSBCCSSCEE
T ss_pred             CcccEEEccCChhhCeEEEEEEEeCCCccccE---EEEEEE---cCCCCce-eeeecceecCCcEEEEecCCCCCCCCEE
Confidence            44589999999999999999999987753211   122222   2333321 1122336789999999999 89999999


Q ss_pred             EEEECCe--eecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecC
Q psy12426        249 EWLCNDI--TIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDI  309 (616)
Q Consensus       249 ~W~~~~~--~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~  309 (616)
                      .|++++.  .+......    ......|.|.++...|.|.|+|.|.|..|.....+.|.|..+
T Consensus       155 ~W~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          155 EWQKLSDSQTMPTPWLA----EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             EEEECSTTCCCCGGGGG----GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             EEEECCCCCccCcccee----ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            9999543  33222111    112339999999999999999999999999888888877743

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.59  E-value=3.9e-14  Score=134.33  Aligned_cols=211  Identities=12%  Similarity=0.035  Sum_probs=135.7

Q ss_pred             CCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCce-
Q psy12426        169 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPT-  247 (616)
Q Consensus       169 ~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~-  247 (616)
                      .....|.|.+++..|.|.|+|.|.|..|....   ...+.+.   .+|......+....+..|+.+.|.|.+.+.+.+. 
T Consensus        48 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~---~~~l~V~---~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~  121 (289)
T 3ejj_X           48 SPGSTLTTRNATFKNTGTYRCTELEDPMAGST---TIHLYVK---DPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDS  121 (289)
T ss_dssp             SSCCEEEESSCCGGGCEEEEEECCC-----CE---EEEEEEC---CSSCSEEESCSEEEEETTSCEEECEEESCGGGGGS
T ss_pred             CCccEEEEeeeccccCEEEEEEEeccCCccee---EEEEEEe---CCCcceecccceEEEecCCceEeEEEccCCCcceE
Confidence            44568999999999999999999988775321   1222222   2232223344778899999999999999987775 


Q ss_pred             eEEEE-CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEE-cCCCCceeeEEEEEecCCC-CCC---CCcccee
Q psy12426        248 KEWLC-NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK-NSWGTDKGTAKVTVLDIPS-PPE---GPLKPSN  321 (616)
Q Consensus       248 ~~W~~-~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~-n~~g~~~~~~~l~v~~~p~-~p~---~~~~~~~  321 (616)
                      +.|++ ++..+....++.+...+   .|.|.++...|.|.|+|.+. +..+.....+.+.+...+. +|.   .+.....
T Consensus       122 v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~  198 (289)
T 3ejj_X          122 VSLMREGGRQVLRKTVYFFSPWR---GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVR  198 (289)
T ss_dssp             EEEEEGGGEECCTTCCEEEETTT---EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEEC
T ss_pred             EEEEecCCeecCCCccEEECCCC---CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEE
Confidence            99986 66666666666665444   79999999999999999999 5555556677787774322 221   1111222


Q ss_pred             ecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC----CCEEEccc---cccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        322 ITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET----GRWVPMGD---VSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       322 ~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~----~~~~~~~~---~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ..+..+.|.|.....   .+...  +.|...+.    ........   .....+.|.++...+.+.|+|.|.|..|...
T Consensus       199 ~~g~~~~l~C~~~~~---~p~~~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  272 (289)
T 3ejj_X          199 IRGEAAQIVCSATNA---EVGFN--VILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRT  272 (289)
T ss_dssp             CSSSCEEEEEEEEES---SSCCE--EEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEE
T ss_pred             EeCCcEEEEEEeCCC---CCceE--EEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCcc
Confidence            357788888875321   12222  22222111    00000001   2245789999999999999999999998754

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.59  E-value=6.2e-15  Score=129.25  Aligned_cols=61  Identities=11%  Similarity=0.160  Sum_probs=51.1

Q ss_pred             EEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        228 VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       228 v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      +..|+.+.|.|.+   |.+.+.|++++..+.....       ....|.|.++...|+|.|+|.|.|..|..
T Consensus       119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSSCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             cCCCCeEEEEeeC---CCCeEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            4489999999988   8899999999998763322       33489999999999999999999987754

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.59  E-value=7.5e-15  Score=116.31  Aligned_cols=100  Identities=31%  Similarity=0.495  Sum_probs=85.6

Q ss_pred             CCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        406 PFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       406 ~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      +..+|++|.++++..++.+++.|+|.+|..+++.+|.+|.|+|+..+. .|............+++.+|.|++.|.|||+
T Consensus         5 p~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~   84 (111)
T 1x5y_A            5 SSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVV   84 (111)
T ss_dssp             CCSCCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEE
T ss_pred             CCCCCcCCCCCEEEeccCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEccccCCcccEEEECCCCCCCEEEEEEE
Confidence            346889999999999999999999998887777779999999988765 7877654445678999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCEEecc
Q psy12426        485 AVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      |+|..|.|++|..+..+++..
T Consensus        85 A~n~~G~s~~S~~~~~v~~~~  105 (111)
T 1x5y_A           85 GVNIAGRSEPATLLQPVTIRE  105 (111)
T ss_dssp             EEETTEECCCCCCSSCBCCCC
T ss_pred             EEcCCcCCCCccCCCCEEecC
Confidence            999999999998876666543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.59  E-value=2.7e-14  Score=134.13  Aligned_cols=137  Identities=13%  Similarity=0.058  Sum_probs=88.4

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecccc----------CCCceeccCCcceEEEcCCeEEEEEEEe
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK----------VSPYINRDQLSDIKVRAGSNFEFDINVI  241 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~----------~~P~~~~~~~~~~~v~~g~~~~l~c~~~  241 (616)
                      ..|.|.+++++|.|.|+|.|.|..+......  ..+.+....          ..|.+....+....+.+|+++.|.|.+.
T Consensus        82 ~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~--~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~  159 (276)
T 3auv_A           82 FTLTISSLQPEDFATYYCQQHYTTPPTFGCG--TKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAAS  159 (276)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCCCCCC--EEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEE
T ss_pred             EEEEEccCChhhCEEEEEEEecCCcccccCC--EEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEec
Confidence            3799999999999999999998755322111  123332221          1233333334567899999999999999


Q ss_pred             eec--CceeEEEECC--eee-----------------cccCcEEEEec--CCceEEEecCCCCCCcEEEEEEEEcCC---
Q psy12426        242 GEP--IPTKEWLCND--ITI-----------------ISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSW---  295 (616)
Q Consensus       242 ~~p--~~~~~W~~~~--~~~-----------------~~~~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n~~---  295 (616)
                      +.+  .+.+.|++++  ..+                 ....++.+...  .....|.|.+++..|+|.|.|.|.|..   
T Consensus       160 g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~  239 (276)
T 3auv_A          160 GFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPY  239 (276)
T ss_dssp             SSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTC
T ss_pred             CccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCc
Confidence            876  5899999963  111                 01245555543  345689999999999999999999973   


Q ss_pred             CC--ceeeEEEEEecCC
Q psy12426        296 GT--DKGTAKVTVLDIP  310 (616)
Q Consensus       296 g~--~~~~~~l~v~~~p  310 (616)
                      +.  ......|.|...+
T Consensus       240 ~~~~fg~gt~l~V~~~~  256 (276)
T 3auv_A          240 AMDYWGQGTLVTVSSAS  256 (276)
T ss_dssp             SCCCBCCCEEEEEC---
T ss_pred             CceEECCCEEEEEcccc
Confidence            21  1234556665433

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=1.5e-14  Score=116.09  Aligned_cols=107  Identities=21%  Similarity=0.291  Sum_probs=87.2

Q ss_pred             cCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCC
Q psy12426        398 QSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKE  475 (616)
Q Consensus       398 s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p  475 (616)
                      +..+.+.+....|.+|.++.+..++.+++.|.|.+|. +++.+|.+|.|+|+..+.  .|......  ....+++.+|.|
T Consensus         6 S~~~~~~t~~~~P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~v~~L~p   82 (118)
T 1x3d_A            6 SGAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMG--SQKQFKITKLSP   82 (118)
T ss_dssp             CCCCCCCCCCSCCCCCCCCEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEEE--SCSEEEEESCCT
T ss_pred             CcCEEEEcCCCCCcCCCCcEEeccCCCEEEEEECCCC-CCCCcceEEEEEEecCCCCCCeEEeecc--CCcEEEeCCCCC
Confidence            4556666777889999999999999999999999876 456689999999987754  67665433  457899999999


Q ss_pred             CCeEEEEEEEEcCCCCCCCCCCCCCEEeccCc
Q psy12426        476 GEEYEFRVIAVNKGGPGEPSKASAPVTCKPRF  507 (616)
Q Consensus       476 ~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~  507 (616)
                      ++.|.|||+|.|..|.|++|......|....+
T Consensus        83 ~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~~P  114 (118)
T 1x3d_A           83 AMGCKFRLSARNDYGTSGFSEEVLYYTSGCSG  114 (118)
T ss_dssp             TCEEEEECCEEESSCBCCCCCCEEEECSCCCC
T ss_pred             CCEEEEEEEEEECCCCCCCccCEEEEcCCCCC
Confidence            99999999999999999999876655444333

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.58  E-value=5.2e-14  Score=130.60  Aligned_cols=125  Identities=11%  Similarity=0.103  Sum_probs=83.7

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCC-CCCCCEEecc-----------------ccCCCceeccCCcceEEEcCC
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS-DPTAPHIARA-----------------KKVSPYINRDQLSDIKVRAGS  232 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s-~~~~~~~~~~-----------------~~~~P~~~~~~~~~~~v~~g~  232 (616)
                      ...|.|.+++++|.|.|.|.|.|..+..... .....+.+..                 ...+|.+ ...+....+.+|+
T Consensus        75 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~p~~~~v~~G~  153 (256)
T 3tf7_C           75 SFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAV-TQSPRNKVTVTGE  153 (256)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCE-EESCSEEEEETTC
T ss_pred             EEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEE-EecCCEEEEeCCC
Confidence            3479999999999999999999876521110 0111233332                 1234444 4456677888999


Q ss_pred             eEEEEEEEeeecCceeEEEECC--eee---c------------ccCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        233 NFEFDINVIGEPIPTKEWLCND--ITI---I------------SKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       233 ~~~l~c~~~~~p~~~~~W~~~~--~~~---~------------~~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      .++|.|.+.+. .+.+.|++..  ..+   .            ...++.+.. ......|.|.+++.+|+|.|+|.|.|.
T Consensus       154 ~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  232 (256)
T 3tf7_C          154 NVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDA  232 (256)
T ss_dssp             CEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEE
T ss_pred             cEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCC
Confidence            99999999887 7799999832  111   0            012333332 234568999999999999999999997


Q ss_pred             CCC
Q psy12426        295 WGT  297 (616)
Q Consensus       295 ~g~  297 (616)
                      .|.
T Consensus       233 ~g~  235 (256)
T 3tf7_C          233 PGQ  235 (256)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            664

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}

Probab=99.58  E-value=2e-14  Score=136.46  Aligned_cols=214  Identities=12%  Similarity=0.035  Sum_probs=135.7

Q ss_pred             EEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe----cCCCCCCCCccceeecCCeEEEEEeCCCCCC-----CCceEE
Q psy12426        274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL----DIPSPPEGPLKPSNITKSSCNLEWRAPRDDG-----GTDILH  344 (616)
Q Consensus       274 l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~----~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~-----~~~i~~  344 (616)
                      |....+.+...|.+++.|.| .|.+..+....+.    ..+.+|.  +.+.. ..+++.|.|.++...+     ...+..
T Consensus        63 lt~~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~f~~~~~~~~~pP~--v~~~~-~~~si~v~w~P~~~~~~~~~~~g~~l~  138 (306)
T 3s98_A           63 FSSLKLNVYEEIKLRIRAEK-ENTSSWYEVDSFTPFRKAQIGPPE--VHLEA-EDKAIVIHISPGTKDSVMWALDGLSFT  138 (306)
T ss_dssp             CCC---CTTSCEEEEEEEEC-SSCEEEEECCCBCHHHHCBCCCCE--EEEEE-CSSCEEEEEECC---CCCC-----CCE
T ss_pred             ccccccCCCCcEEEEEEEEe-CCcCCCEeeeeEechhhCccCCCe--EEEEE-cCCEEEEEEECCCCCCcceeccCCcEE
Confidence            33345678889999999999 6654433222221    2344443  55443 4468999999654321     246899


Q ss_pred             EEEEEEeCCCCC-EEEccccccceEEeccccCCCeEEEEEEEEe--cCcCCCCccccCCEEccCCCCC-CCCCCCCEEEE
Q psy12426        345 YVVEKMDMETGR-WVPMGDVSGTYTRAENLIEGHDYNFRVKAVN--KIGESLPLVCQSPITAKDPFGR-PDRPGQPTVTD  420 (616)
Q Consensus       345 y~v~~~~~~~~~-~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n--~~g~~~~~~~s~~~~~~~~~~~-p~~p~~~~~~~  420 (616)
                      |.|.|++.+... |...  .....+.|.+|.+++.|.|+|+|.|  ..|.|..+   ..+.+.+.... +.+|.++.+..
T Consensus       139 Y~v~y~~~~~~~~~~~~--~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S---~~~~~~T~~~~p~~~P~~v~~~~  213 (306)
T 3s98_A          139 YSLVIWKNSSGVEERIE--NIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYS---PVHCIKTTVENELPPPENIEVSV  213 (306)
T ss_dssp             EEEEEEETTTCCCEEEE--EECTEEEECSCCTTCEEEEEEEEEEGGGTEECCCC---CCEEEECCSCCSSCCCEEEEEEE
T ss_pred             EEEEEEECCCCCeEEEe--cccceEEEccCCCCCeEEEEEEEEEccCCCCCCCC---CcEeeEecCCCcCCCCceEEEEE
Confidence            999988754433 4422  3356899999999999999999999  56777664   44555444444 35677888765


Q ss_pred             ecCCeEEEEecCCCCCCCCcceeEEEEEee--------CCC-CceEeE-eecCCccEEEcCC-CCCCCeEEEEEEEEcCC
Q psy12426        421 WGKDHVDLEWTPPKKDGGSPISQYIIEKKP--------KYG-PWEKAC-IVPANITATSVPD-LKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       421 ~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~--------~~~-~~~~~~-~~~~~~~~~~l~~-L~p~t~Y~~~v~a~n~~  489 (616)
                      . .+++.|+|.+|.. +    ..|.++|..        .++ .|.... -.....+.+.+.+ |.++..|.|||+|.|..
T Consensus       214 ~-~~s~~l~W~~p~~-~----~~~~v~~~~gy~~~~~~~~~~~W~~~~~c~~~~~~~c~~~~~~~~~~~Y~~RV~A~n~~  287 (306)
T 3s98_A          214 Q-NQNYVLKWDYTYA-N----MTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGN  287 (306)
T ss_dssp             E-TTEEEEEEECSSS-S----CEEEEEEEEGGGGSCC----CCCEECGGGTTBSSSEEEEEGGGSCSSEEEEEEEEECSS
T ss_pred             e-cCEEEEEeCCCCC-c----EEEEEEEehhhhhccccccccCceECCCceeCCCccccCchhhcccCCEEEEEEEccCC
Confidence            5 5789999997642 2    246555542        223 787431 1123456777777 34555999999999999


Q ss_pred             CCCCCCCCCCCEE
Q psy12426        490 GPGEPSKASAPVT  502 (616)
Q Consensus       490 G~g~~s~~~~~~~  502 (616)
                      |.|.+|....+.+
T Consensus       288 ~~s~~s~~~~~~~  300 (306)
T 3s98_A          288 NTSFWSEEIKFDT  300 (306)
T ss_dssp             CBCCCCCCEEEEC
T ss_pred             CccccccccccCc
Confidence            9999987655433

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=3.7e-15  Score=122.12  Aligned_cols=116  Identities=22%  Similarity=0.312  Sum_probs=92.5

Q ss_pred             EEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCC--ceEeEe
Q psy12426        383 VKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WEKACI  460 (616)
Q Consensus       383 v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~--~~~~~~  460 (616)
                      |.|.|..|.+..+..  .+.+.+....|++|.++++...+.+++.|+|.+|...++ .|.+|.|+|+..+..  ......
T Consensus         3 V~A~n~~G~g~~S~~--~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~   79 (130)
T 1wfo_A            3 SGSSGRIGDGSPSHP--PILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEV   79 (130)
T ss_dssp             CCCCCCCCCCCCCCC--CSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCS-CCCEEEEEEEESSCCCSCCCEEE
T ss_pred             eEEEecccCCCCCCC--cEEEEcCCCCCCCCCceEEEecCCCEEEEEEcCCCCCCC-ceEEEEEEEEECCCCCceEEEEE
Confidence            567899999877532  355566678899999999999999999999998865444 599999999987652  111235


Q ss_pred             ecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCE
Q psy12426        461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPV  501 (616)
Q Consensus       461 ~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~  501 (616)
                      .......++|.+|.|++.|.|+|+|.|..|.|++|....+.
T Consensus        80 ~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~  120 (130)
T 1wfo_A           80 LAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVT  120 (130)
T ss_dssp             ECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             eCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEe
Confidence            56778899999999999999999999999999988754433

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=114.79  Aligned_cols=99  Identities=25%  Similarity=0.335  Sum_probs=85.9

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      ..+|++|.++++..++.+++.|.|.+|..+++.+|.+|.|+|+..+. .|............+++.+|.|++.|.|||+|
T Consensus         5 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   84 (110)
T 2yuw_A            5 SSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKA   84 (110)
T ss_dssp             CCCSCCCEEEEEEEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCCCccEEEeccCCeEEEEECCCCCCCCCCccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEEE
Confidence            36788898999999999999999998887777789999999998776 78766544456889999999999999999999


Q ss_pred             EcCCCCCCCCCCCCCEEecc
Q psy12426        486 VNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       486 ~n~~G~g~~s~~~~~~~~~~  505 (616)
                      +|..|.|++|..+..+++.+
T Consensus        85 ~n~~G~s~~S~~~~~v~~~~  104 (110)
T 2yuw_A           85 VNAAGASEPKYYSQPILVKE  104 (110)
T ss_dssp             EETTEECCCEECSSCEECCC
T ss_pred             EcCCcCCCCcCCCCCEEecC
Confidence            99999999998887777654

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.58  E-value=4.6e-14  Score=140.96  Aligned_cols=129  Identities=17%  Similarity=0.137  Sum_probs=93.9

Q ss_pred             EEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe----cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEE
Q psy12426        273 KLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL----DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVE  348 (616)
Q Consensus       273 ~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~----~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~  348 (616)
                      .+.+..+.....|.|+|.|.|..|....  .+.+.    .+|.+|.+ +.+.....+.+.|+|.+|... +..+..|.|+
T Consensus       348 ~ct~~l~~~~t~Y~f~V~A~N~~G~~~S--~~~~~~~~~v~P~PP~n-l~v~~~s~~sl~LsW~pP~~~-~g~~l~YeV~  423 (488)
T 2q7n_A          348 RLGVQMHPGQEIHNFTLTGRNPLGQAQS--AVVINVTERVAPHDPTS-LKVKDINSTVVTFSWYLPGNF-TKINLLCQIE  423 (488)
T ss_dssp             EEEEECCSSCCCCEEEEEEEETTEEEEE--EEECCGGGTBCCCCCEE-EEEEECSTTCEEEEEEEEEEC-SSSEEEEEEE
T ss_pred             EEEEcCCCCccEEEEEEEEEeCCCCccc--eEEEEecCCCCCCCCeE-EEEEecCCCEEEEEEeCCCCC-CCcceEEEEE
Confidence            4555444335889999999999988443  33332    35677765 666667788999999988654 3478999999


Q ss_pred             EEeCCCCCEEE-cccc--ccceE--EeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCC
Q psy12426        349 KMDMETGRWVP-MGDV--SGTYT--RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP  406 (616)
Q Consensus       349 ~~~~~~~~~~~-~~~~--~~~~~--~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~  406 (616)
                      |+..+...|.. ....  ....+  .+.+|.+++.|.|+|+|.+ .|.|.++.+|..+.+.+.
T Consensus       424 Yr~~~~~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~  485 (488)
T 2q7n_A          424 ICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTT  485 (488)
T ss_dssp             EBCTTSCCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCC
T ss_pred             EEECCCCCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECC
Confidence            99876666742 2111  13345  8999999999999999999 888877777877776654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.58  E-value=1.3e-14  Score=131.68  Aligned_cols=132  Identities=11%  Similarity=0.089  Sum_probs=83.8

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW  250 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W  250 (616)
                      ...|.|.+++.+|.|.|+|.|.| .|... .  ...+.+......|..    .....+..|+.+.|.|.+.|.|.+.+.|
T Consensus        79 ~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~-~--~~~l~V~~~~~~~~~----~~~~~~~~g~~v~L~C~~~g~P~p~i~W  150 (222)
T 3sbw_C           79 NAALQITDVKLQDAGVYRCMISY-GGADY-K--RITVKVNAPYNKINQ----RILVVDPVTSEHELTCQAEGYPKAEVIW  150 (222)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEES-SSEEE-E--EEEEEEEBCCCCCEE----EEEEEETTTTEEEEEEEEEEBSCCEEEE
T ss_pred             EEEEEEcCcccccCeEEEEEEEe-CCCce-e--EEEEEEECCCCCCCc----eeeeeecCCCcEEEEEEecCCCCCeEEE
Confidence            34788899999999999999887 33211 1  112222222222221    1112567899999999999999999999


Q ss_pred             EEC-CeeecccCcEEEEe--cCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy12426        251 LCN-DITIISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP  310 (616)
Q Consensus       251 ~~~-~~~~~~~~~~~~~~--~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p  310 (616)
                      +++ +..+..........  .+......+..+...|.|.|+|.|.|..|.....+.+.+...|
T Consensus       151 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p  213 (222)
T 3sbw_C          151 TSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELP  213 (222)
T ss_dssp             EETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC-
T ss_pred             EECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCc
Confidence            998 55544322221111  1111122222445678999999999999999888888887654

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.58  E-value=1.4e-14  Score=133.26  Aligned_cols=120  Identities=11%  Similarity=0.072  Sum_probs=81.5

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccC--CCceeccCCcceEEEcCCeEEEEEEEeeecC--ce
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKV--SPYINRDQLSDIKVRAGSNFEFDINVIGEPI--PT  247 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~--~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~--~~  247 (616)
                      ..|.|.++++.|.|.|+|.|.|..+......  ..+.+.....  +|.+....+....+.+|+.+.|.|.+.+.|.  +.
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~  152 (240)
T 1moe_A           75 FTLIIDPVEADDVATYYCQQTNEDPYTFGGG--TKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTY  152 (240)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCCBCCC--EEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSC
T ss_pred             EEEEEcCCChhhCEEEEEEEccCCceeecCC--EEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCE
Confidence            3688999999999999999988755311111  1233322211  2333233456678999999999999998874  59


Q ss_pred             eEEEEC--Ceeec-----------------ccCcEEEEec--CCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        248 KEWLCN--DITII-----------------SKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       248 ~~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      +.|+++  +..+.                 ...++.+...  .....|.|.+++.+|+|.|.|.|.+
T Consensus       153 v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          153 MHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            999995  22110                 1235555432  4457899999999999999999985

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.58  E-value=5.2e-14  Score=113.43  Aligned_cols=102  Identities=30%  Similarity=0.578  Sum_probs=86.8

Q ss_pred             ccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCC--CCceEeEe-ecCCccEEEcCCCCCCCeE
Q psy12426        403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY--GPWEKACI-VPANITATSVPDLKEGEEY  479 (616)
Q Consensus       403 ~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~--~~~~~~~~-~~~~~~~~~l~~L~p~t~Y  479 (616)
                      ......+|.+|.++.+..++.+++.|.|.+ ..+++.+|.+|.|+|+..+  ..|..... .......++|.+|.|++.|
T Consensus        11 ~~~~~~~P~~P~~~~~~~~~~~sv~l~W~p-~~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~L~p~t~Y   89 (121)
T 1x4z_A           11 DHGRLSPPEAPDRPTISTASETSVYVTWIP-RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISY   89 (121)
T ss_dssp             CSSSCCCCCCCCCCEEEECCSSEEEEECCC-CCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEE
T ss_pred             ccCcCCCCccCCCCEEEEccCCEEEEEEEC-CCCCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECCCCCCCEE
Confidence            334557899999999999999999999994 5567778999999999876  37876643 3667889999999999999


Q ss_pred             EEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426        480 EFRVIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       480 ~~~v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      .|||+|+|..|.|++|..+..+++..
T Consensus        90 ~frV~A~n~~G~s~~S~~~~~v~~~~  115 (121)
T 1x4z_A           90 KFRVRALNMLGESEPSAPSRPYVVSG  115 (121)
T ss_dssp             EEEEEEEETTEECCCCCCCCCEECCS
T ss_pred             EEEEEEEcCCCcCCCcCCCCCEEcCC
Confidence            99999999999999999988777654

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.58  E-value=8.8e-15  Score=115.69  Aligned_cols=103  Identities=29%  Similarity=0.372  Sum_probs=84.3

Q ss_pred             CCCCCCCCCCCEE-EEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEE
Q psy12426        406 PFGRPDRPGQPTV-TDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       406 ~~~~p~~p~~~~~-~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      ...+|++|.++.+ ..+..+++.|+|.+|..+++.+|.+|.|+|+..+. .|.....  +....++|.+|.|++.|.|||
T Consensus         5 ~~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV   82 (110)
T 2crz_A            5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYSFRL   82 (110)
T ss_dssp             CCCCCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEE--ESCSEEEEESCCTTCEEEECC
T ss_pred             cCCCCCCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceEEEEe--CCcEEEEECCcCCCCEEEEEE
Confidence            3468899999998 56788999999998877778889999999997665 7876643  457899999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCEEeccCcCCC
Q psy12426        484 IAVNKGGPGEPSKASAPVTCKPRFVAP  510 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~~~~~~~~~~~p  510 (616)
                      +|+|..|.|++|......+...++.+|
T Consensus        83 ~A~n~~G~g~~S~~~~~~T~~~~P~~P  109 (110)
T 2crz_A           83 RAANKMGFGPFSEKCDITTAPGSGPSS  109 (110)
T ss_dssp             EEECSSCBCCCCCCEEEECCCSCCCCC
T ss_pred             EEEcCCccCCCCCccccccCCCCCCCC
Confidence            999999999999877665554444443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.57  E-value=1.3e-14  Score=113.40  Aligned_cols=96  Identities=25%  Similarity=0.403  Sum_probs=85.4

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.| ...+.++.+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|
T Consensus        12 ~pP~f-~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   90 (107)
T 3knb_B           12 SPPCF-LRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN   90 (107)
T ss_dssp             EEEEE-EECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEE-EeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence            45777 45567899999999999999999999999999999999888888888778888999999999999999999999


Q ss_pred             CCCCceeeEEEEEecCC
Q psy12426        294 SWGTDKGTAKVTVLDIP  310 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~~p  310 (616)
                      ..|....++.|.|..+|
T Consensus        91 ~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           91 AAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             TTEEEEEEEEEEEEC--
T ss_pred             CCCEEEEEEEEEEEcCC
Confidence            99999889999988765

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.57  E-value=4.6e-14  Score=129.90  Aligned_cols=133  Identities=12%  Similarity=0.047  Sum_probs=84.8

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCC---CCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGP---GEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKE  249 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~---~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~  249 (616)
                      .|.|.+++..|.|.|+|.|.+..+.   +..+. ...+.+......|.+.... . ..+.+|++++|.|.+.+.+ +.+.
T Consensus        63 ~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~-~~~L~V~~~~~~P~l~~~p-~-~~V~~G~~vtL~C~~~~~~-~~~~  138 (257)
T 1b6u_A           63 NFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSD-PLDIVITGLYEKPSLSAQP-G-PTVLAGESVTLSCSSRSSY-DMYH  138 (257)
T ss_dssp             EEEECSCCTTTCEEEEEEEECSSCTTSCCCCCC-CEEEEEECSSCCCEEECSS-C-TTCBTTCEEEEEEECSSCC-SEEE
T ss_pred             EEEeecCCcccCEEEEEeEeccCCCccccccCC-CEEEecccCCCCcceEccC-C-CccCCCCEEEEEEeCCCCC-cEEE
Confidence            6778888888888888888765332   12221 1223443334456654332 2 3578999999999988764 6899


Q ss_pred             EEECCeeecccCcEEEE-ecCCceEEEecCCCCCCcEEEEEEEEcCCC-----CceeeEEEEEecCCC
Q psy12426        250 WLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWG-----TDKGTAKVTVLDIPS  311 (616)
Q Consensus       250 W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g-----~~~~~~~l~v~~~p~  311 (616)
                      |+|++..+......... .......|.|.+++  |.|.|+|.|.+..+     ..+....|.|...|.
T Consensus       139 w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~  204 (257)
T 1b6u_A          139 LSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS  204 (257)
T ss_dssp             EEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred             EEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence            99999876433221111 11235689999998  99999999997532     223445566665543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.56  E-value=2.2e-14  Score=134.44  Aligned_cols=130  Identities=14%  Similarity=0.172  Sum_probs=90.6

Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE---eeecCc
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV---IGEPIP  246 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~---~~~p~~  246 (616)
                      ....|.|.+++.+|.|.|+|.|.|..+....+   ..+.+.....       .+....+..|+.+.|.|.+   .+.|.+
T Consensus        82 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~---~~~~l~V~~~-------~p~~~~v~~G~~v~L~C~~~~~~~~p~~  151 (268)
T 3mj6_A           82 NDGSLLLQDVQKADEGIYTCEIRLKNESMVMK---KPVELWVLPE-------EPRDLRVRVGDTTQMRCSIQSTEEKRVT  151 (268)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTCCCEEE---EEEEEEEECC-------CCSEEEEETTCCEEECCBCEESSSSCCC
T ss_pred             CEEEEEECCCCHhHCEEEEEEEEecCCcceEE---EEEEEEEecc-------CCCccccccCCcEEEEEEecCCCCCCcc
Confidence            34589999999999999999999875543211   1122222112       2346788999999999999   566889


Q ss_pred             eeEEEECCeee-ccc---------------------CcEEEEe--cCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        247 TKEWLCNDITI-ISK---------------------DRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       247 ~~~W~~~~~~~-~~~---------------------~~~~~~~--~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      .+.|++++... ...                     .+..+..  ......|.|.++...|.|.|+|.|.|..|.....+
T Consensus       152 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~  231 (268)
T 3mj6_A          152 KVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTI  231 (268)
T ss_dssp             EEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEE
Confidence            99999943211 100                     1111111  12345899999999999999999999888888888


Q ss_pred             EEEEecC
Q psy12426        303 KVTVLDI  309 (616)
Q Consensus       303 ~l~v~~~  309 (616)
                      .|.+...
T Consensus       232 ~l~V~~~  238 (268)
T 3mj6_A          232 VLHVVQD  238 (268)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            8888543

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.56  E-value=2.2e-14  Score=138.80  Aligned_cols=231  Identities=10%  Similarity=0.041  Sum_probs=146.1

Q ss_pred             cccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeE-EEEEEEEeCCCCCCCCCCCCCEEeccccCC
Q psy12426        137 LLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQY-EFRVLAVNKGGPGEPSDPTAPHIARAKKVS  215 (616)
Q Consensus       137 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~-~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~  215 (616)
                      |.+.+.|++  ++..+.   .....       .....|.|.+++..|.| .|+|.|.|..|.....     ........+
T Consensus        66 p~~~v~W~k--~~~~~~---~~~~~-------~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~-----~~~~v~~~~  128 (329)
T 3oq3_B           66 KDNVVNWEK--IGKTRR---PLNRR-------VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG-----IVRSHIRKP  128 (329)
T ss_dssp             TTCEEEEEE--CSSSCE---ECSTT-------EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEE-----EEEEEECCC
T ss_pred             CCCeeEEEE--CCCCcc---ccCce-------eecceEEEcCCChHhCCCcEEEEEEeCCCceeeE-----EEEEEEcCC
Confidence            446799999  533222   11111       22458999999999999 9999999988752211     111112233


Q ss_pred             CceeccCCcceEEEcCCeEEEEEEEeeec-CceeEEEECCeeecc-cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        216 PYINRDQLSDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       216 P~~~~~~~~~~~v~~g~~~~l~c~~~~~p-~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      |.+. .......+.+|+.+.|.|.+.+.| .+.+.|++++..+.. ..++... .   ..|.|.++...|.|.|+|.|.|
T Consensus       129 p~~~-~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~-~---~~L~I~~v~~~D~G~Y~C~a~n  203 (329)
T 3oq3_B          129 PSCI-PETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS-G---QNLIIHNPELEDSGRYDCYVHY  203 (329)
T ss_dssp             CSCE-EEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE-T---TEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcEe-ccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC-C---CEEEEeecChhhCEEEEEEEEe
Confidence            4432 212223356799999999999999 899999999998753 3444444 2   4899999999999999999998


Q ss_pred             C--CCCceee----EEEEEecCCCCCC---CCccceeecCCeEEEEEeCCCCCC-CCceEEEEEEEEeCCCC------CE
Q psy12426        294 S--WGTDKGT----AKVTVLDIPSPPE---GPLKPSNITKSSCNLEWRAPRDDG-GTDILHYVVEKMDMETG------RW  357 (616)
Q Consensus       294 ~--~g~~~~~----~~l~v~~~p~~p~---~~~~~~~~~~~~~~l~W~~~~~~~-~~~i~~y~v~~~~~~~~------~~  357 (616)
                      .  .|.....    +.+.+..+|....   .+-......+..+.|.|....... ..++   .+.|...+..      ..
T Consensus       204 ~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i---~v~W~~~g~~i~~~~~~~  280 (329)
T 3oq3_B          204 DDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDV---LIDWENPSGWIIGLDFGV  280 (329)
T ss_dssp             CCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCC---EEEEECTTSCBCCBCSSE
T ss_pred             cccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCc---EEEEEECCeeeeccCCce
Confidence            7  6654433    6677766653211   112234456778888888643321 0121   2333322111      00


Q ss_pred             EEc----cccccceEEeccccCCCeE-EEEEEEEecCcCC
Q psy12426        358 VPM----GDVSGTYTRAENLIEGHDY-NFRVKAVNKIGES  392 (616)
Q Consensus       358 ~~~----~~~~~~~~~i~~L~~~~~y-~~~v~a~n~~g~~  392 (616)
                      ...    .......+.|.++...+.+ .|+|.|.|..|..
T Consensus       281 ~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~  320 (329)
T 3oq3_B          281 YSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK  320 (329)
T ss_dssp             EEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEE
T ss_pred             eeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCce
Confidence            000    0013456889999998889 9999999998864

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.56  E-value=4.5e-14  Score=130.69  Aligned_cols=71  Identities=14%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             CcceEEEcCCeEEEEEEEeeec--CceeEEEEC--Ceeec-----------------ccCcEEEEec--CCceEEEecCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP--IPTKEWLCN--DITII-----------------SKDRFKIVND--DKSTKLKVFDS  279 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p--~~~~~W~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~l  279 (616)
                      +....+.+|+.+.|.|.+.+.+  .+.+.|+++  +..+.                 ...++.+...  ....+|.|.++
T Consensus       138 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v  217 (250)
T 3esu_F          138 SGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSL  217 (250)
T ss_dssp             CCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCC
Confidence            4557789999999999998876  789999997  33221                 1145555432  44568999999


Q ss_pred             CCCCcEEEEEEEEc
Q psy12426        280 KRGDSGIYTLAVKN  293 (616)
Q Consensus       280 ~~~~~g~y~c~a~n  293 (616)
                      +.+|+|.|.|.+.+
T Consensus       218 ~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          218 TSVDSAVYFCARSG  231 (250)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccCEEEEEEEec
Confidence            99999999999997

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.56  E-value=7.2e-15  Score=141.39  Aligned_cols=210  Identities=12%  Similarity=0.044  Sum_probs=131.9

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceec--cCCcceEEEcCCeEEEEEEE------eee
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINR--DQLSDIKVRAGSNFEFDINV------IGE  243 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~--~~~~~~~v~~g~~~~l~c~~------~~~  243 (616)
                      ..|.|.+++..|.|.|+|.|.|..|.....     +.+.....+|.+..  .......+..|+.+.|.|.+      .+.
T Consensus        62 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~-----~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~  136 (315)
T 1itb_B           62 EKLWFVPAKVEDSGHYYCVVRNSSYCLRIK-----ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENN  136 (315)
T ss_dssp             SBEECTTCCGGGCSCCEECCCSSSCCCCEE-----CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTT
T ss_pred             CeEEECCCChhhCEEEEEEEeCCceEEEEE-----EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCC
Confidence            489999999999999999999887653321     11112233444321  11234578899999999998      889


Q ss_pred             cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEE-cCCCCc---eeeEEEEEecC--CCCCC---
Q psy12426        244 PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK-NSWGTD---KGTAKVTVLDI--PSPPE---  314 (616)
Q Consensus       244 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~-n~~g~~---~~~~~l~v~~~--p~~p~---  314 (616)
                      |.+.+.|++++..+...........+   .|.|.++...|.|.|+|.|. |..|..   .....+.+...  +.+|.   
T Consensus       137 p~~~i~W~k~~~~l~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~  213 (315)
T 1itb_B          137 ELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVS  213 (315)
T ss_dssp             CCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECS
T ss_pred             CCCEEEEEECCEECCCccceEeecCc---eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEec
Confidence            99999999999988643322222222   89999999999999999999 777765   23333333321  12221   


Q ss_pred             CCc-cceeecCCeEEEEEeCCCCCCCCceEEEEEEEE--eCCC-C-----CEEEccc-------cccceEEeccccCCC-
Q psy12426        315 GPL-KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKM--DMET-G-----RWVPMGD-------VSGTYTRAENLIEGH-  377 (616)
Q Consensus       315 ~~~-~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~--~~~~-~-----~~~~~~~-------~~~~~~~i~~L~~~~-  377 (616)
                      .+- .+....+..+.|.|......  .+  .+.+.+.  .... .     .......       .....+.|.++...+ 
T Consensus       214 ~~~~~~~~~~g~~v~l~C~~~g~P--~p--~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  289 (315)
T 1itb_B          214 PANETMEVDLGSQIQLICNVTGQL--SD--IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFY  289 (315)
T ss_dssp             CCSEEEECCSSSCEEEEEEEEECT--TS--EEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGG
T ss_pred             CCCCcEEEeCCCcEEEEEEEecCC--CC--eeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHc
Confidence            111 12344677889999864322  11  1222211  0000 0     0111110       112378899999988 


Q ss_pred             eEEEEEEEEecCcCCC
Q psy12426        378 DYNFRVKAVNKIGESL  393 (616)
Q Consensus       378 ~y~~~v~a~n~~g~~~  393 (616)
                      .+.|+|.|.|..|...
T Consensus       290 ~G~Y~C~a~N~~G~~~  305 (315)
T 1itb_B          290 KHPFTCFAKNTHGIDA  305 (315)
T ss_dssp             TSCEEEEEECTTCCEE
T ss_pred             CCceEEEEecCCCcee
Confidence            8999999999999754

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=2.5e-14  Score=117.93  Aligned_cols=103  Identities=21%  Similarity=0.320  Sum_probs=81.3

Q ss_pred             cCCEEccCCCCCCC-CCCCCEEEEecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCC-C--ceEeEeecCCccEEEcCC
Q psy12426        398 QSPITAKDPFGRPD-RPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYG-P--WEKACIVPANITATSVPD  472 (616)
Q Consensus       398 s~~~~~~~~~~~p~-~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~-~--~~~~~~~~~~~~~~~l~~  472 (616)
                      +..+.+.+....|. +|.++++...+.+++.|+|.+|. ...++.|.+|.|+|+..+. .  +............++|.+
T Consensus         6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   85 (134)
T 2edx_A            6 SGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVG   85 (134)
T ss_dssp             CCCCCCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEES
T ss_pred             cCCEEEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccEEEeCC
Confidence            45566667777777 77799999889999999999873 2344469999999988765 2  233333356788999999


Q ss_pred             CCCCCeEEEEEEEEcCCCCCCCCCCCCC
Q psy12426        473 LKEGEEYEFRVIAVNKGGPGEPSKASAP  500 (616)
Q Consensus       473 L~p~t~Y~~~v~a~n~~G~g~~s~~~~~  500 (616)
                      |.|++.|.|+|+|.|..|.|++|.....
T Consensus        86 L~p~t~Y~~~V~A~n~~G~g~~S~~~~~  113 (134)
T 2edx_A           86 LEKWTEYRVWVRAHTDVGPGPESSPVLV  113 (134)
T ss_dssp             CCTTCEEEEEEEEEETTBCCCCCCCEEE
T ss_pred             CCCCCEEEEEEEEEcCCCcCCCCCCEEe
Confidence            9999999999999999999998875443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.55  E-value=1.3e-14  Score=132.52  Aligned_cols=118  Identities=16%  Similarity=0.147  Sum_probs=79.4

Q ss_pred             eEEeecccCCCeEEEEEEEEeCC-CCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeE-EEEEEE-eeecCceeE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKG-GPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNF-EFDINV-IGEPIPTKE  249 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~-g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~-~l~c~~-~~~p~~~~~  249 (616)
                      .|.|.+++.+|.|.|+|.|.+.. |...   ....+.+...+..|.+. ..+....+..|+.+ .|.|.+ .+.|.+.+.
T Consensus        78 ~L~i~~v~~~D~G~Y~C~~~~~~~~~~~---~~~~l~V~~~p~~~~~~-~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~  153 (231)
T 2pet_A           78 RLVLAEAQVGDERDYVCVVRAGAAGTAE---ATARLNVFAKPEATEVS-PNKGTLSVMEDSAQEIATCNSRNGNPAPKIT  153 (231)
T ss_dssp             CEEESSCCGGGCEEEEEEEECGGGCEEE---EEEEEEEEBCCCCCEEE-ECCSSCCTTCCSEEEEEEEEEEEEBSCCEEE
T ss_pred             eEEEcccCcccCceEEEEEEecCCCceE---EEEEEEEEecCCCcEEe-cCCcceeecCCCceEEEEEEeECcccCCEEE
Confidence            38888888889999999988875 3221   11223333333345542 23344556688887 999999 899999999


Q ss_pred             EEECCeeecccC----cEEEEec----CC-----ceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        250 WLCNDITIISKD----RFKIVND----DK-----STKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       250 W~~~~~~~~~~~----~~~~~~~----~~-----~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      |++++..+....    ++.+...    ..     ...|.|......|.|.|+|.|.|.
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          154 WYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             EEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             EEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            999999876554    4443321    11     146777755555699999999994

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.55  E-value=5e-14  Score=125.55  Aligned_cols=128  Identities=11%  Similarity=0.063  Sum_probs=84.4

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCC--CCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEe-eecCce
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS--DPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPT  247 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s--~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~-~~p~~~  247 (616)
                      ...|.|.+++..|.|.|+|.|.|..|.....  .....+.+......|.+..     .....|+.+.|.|.+. +.|.|.
T Consensus        64 ~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~-----~~~~~g~~~~l~C~~~~g~P~p~  138 (201)
T 1dr9_A           64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISD-----FEIPTSNIRRIICSTSGGFPEPH  138 (201)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE-----EECSSTTEEEEEEEEEEESSCEE
T ss_pred             CcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEe-----ccCCCCCeEEEEEecCCccCCCE
Confidence            3489999999999999999999987653310  1122233333333344321     1124588899999995 999999


Q ss_pred             eEEEECCeeecccCcEEEEecC-Cc-eEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426        248 KEWLCNDITIISKDRFKIVNDD-KS-TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       248 ~~W~~~~~~~~~~~~~~~~~~~-~~-~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                      +.|++++..+............ .. ....+..+...|.|.|+|.|.|..|.....+.
T Consensus       139 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          139 LSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             EEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             EEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence            9999999887644322222211 22 22233455668999999999998887765544

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.55  E-value=2.7e-14  Score=111.82  Aligned_cols=94  Identities=23%  Similarity=0.280  Sum_probs=77.2

Q ss_pred             CCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        406 PFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       406 ~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      ...+|++|.++++..++.+++.|+|.+|.. ++.+|.+|.|+|+..++.|....  .+....++|.+|.|++.|.|||+|
T Consensus         4 ~~~~P~~P~~~~~~~~s~~sv~l~W~~p~~-~g~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~v~~L~p~t~Y~frV~A   80 (106)
T 1x4x_A            4 GSSGPDQCKPPQVTCRSATCAQVNWEVPLS-NGTDVTEYRLEWGGVEGSMQICY--CGPGLSYEIKGLSPATTYYCRVQA   80 (106)
T ss_dssp             SCCSCCCCCCCCCEEEETTEEEEECCCCSC-SSSCCCEEEEEEESSTTSCCEEE--EESCSEEEEESCCSSCEEEEEEEE
T ss_pred             CCCCcCCCCCCEEEEcCCCEEEEEEcCCCC-CCCcceEEEEEEEcCCCceEEEE--eCCcceEEEcCCCCCCEEEEEEEE
Confidence            457889999999999999999999998765 56679999999987765554332  244679999999999999999999


Q ss_pred             EcCCCCCCCCCCCCCEE
Q psy12426        486 VNKGGPGEPSKASAPVT  502 (616)
Q Consensus       486 ~n~~G~g~~s~~~~~~~  502 (616)
                      .|..|.|++|......|
T Consensus        81 ~n~~G~g~~S~~v~~~T   97 (106)
T 1x4x_A           81 LSVVGAGPFSEVVACVT   97 (106)
T ss_dssp             ECSSCCCCBCCCEEEEC
T ss_pred             EcCCcCCCCcCCEEEEC
Confidence            99999999887554433

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.55  E-value=1.2e-14  Score=142.05  Aligned_cols=212  Identities=11%  Similarity=-0.051  Sum_probs=114.4

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCcee--ccCCcceEEEcCCeEEEEEEE-----eee
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYIN--RDQLSDIKVRAGSNFEFDINV-----IGE  243 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~--~~~~~~~~v~~g~~~~l~c~~-----~~~  243 (616)
                      ...|.|.+++.+|.|.|+|.|.|..|....+   ..+.+..  .++.+.  ...+....+..|+.+.|.|.+     .+.
T Consensus        78 ~~~L~i~~~~~~D~G~Y~C~a~n~~~~~~~~---~~l~V~~--~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~  152 (349)
T 4dep_C           78 KDVLWFRPTLLNDTGNYTCMLRNTTYCSKVA---FPLEVVQ--KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSS  152 (349)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEECSSCEEEEE---EEEEEEC--CCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTT
T ss_pred             CCEEEEccCChhhCEEEEEEEecCCceEEEE---EEEEEec--CCcccCcccccCcceeeecCccEEEEcCCCcccccCC
Confidence            3489999999999999999999987653321   1122222  111111  122345678899999999985     778


Q ss_pred             cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC-CCc---eeeEEEEEecCCC---CCCC-
Q psy12426        244 PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW-GTD---KGTAKVTVLDIPS---PPEG-  315 (616)
Q Consensus       244 p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~-g~~---~~~~~l~v~~~p~---~p~~-  315 (616)
                      |.+.+.|++++..+....++...  +  ..|.|.++...|.|.|+|.|.|.. |..   .....+.+...+.   +|.- 
T Consensus       153 p~~~v~W~k~~~~l~~~~~~~~~--~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~  228 (349)
T 4dep_C          153 VKPTITWYMGCYKIQNFNNVIPE--G--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIH  228 (349)
T ss_dssp             SCCEEEEEETTEECCSCSSEEEE--T--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC
T ss_pred             CCceEEEeeCCEECCCccceeec--C--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEe
Confidence            99999999999987554443322  2  389999999999999999999976 443   4556666655321   1110 


Q ss_pred             -Cc--c-ceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEE-----------Ecc----ccccceEEeccccCC
Q psy12426        316 -PL--K-PSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV-----------PMG----DVSGTYTRAENLIEG  376 (616)
Q Consensus       316 -~~--~-~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~-----------~~~----~~~~~~~~i~~L~~~  376 (616)
                       +.  . +....+..+.|.|.......+.+...+  .|...+...-.           ...    ......+.|.++...
T Consensus       229 ~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v--~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  306 (349)
T 4dep_C          229 SPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEV--WWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSE  306 (349)
T ss_dssp             ----------------CCCEEEEECCCTTCCCEE--EEESSCC--------CCCCEEEECCTTCCEEEEECC--------
T ss_pred             cCCCceeEEEecCCcEEEEEEEEEccCCCCCCEE--EEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHH
Confidence             01  0 022344556666664321111122222  22111110000           000    011234788888888


Q ss_pred             Ce-EEEEEEEEecCcCCC
Q psy12426        377 HD-YNFRVKAVNKIGESL  393 (616)
Q Consensus       377 ~~-y~~~v~a~n~~g~~~  393 (616)
                      +. +.|+|.|.|..|...
T Consensus       307 d~~G~Y~C~a~N~~G~~~  324 (349)
T 4dep_C          307 DLKRSYVCHARSAKGEVA  324 (349)
T ss_dssp             -----CEEEEECSSCEEE
T ss_pred             HcCCcEEEEEEcCCCcEE
Confidence            88 999999999998754

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.55  E-value=1e-14  Score=112.67  Aligned_cols=94  Identities=24%  Similarity=0.347  Sum_probs=79.0

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeE-eecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC-IVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~-~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .+|++|.++.+.. ..+++.|+|.+|.. ++++|++|.|+|+..++.|.... ......+.|++.+|.+++.|.|||.|+
T Consensus         6 ep~~pP~~l~v~~-~~~sv~L~W~pP~~-~~~~I~gY~vey~~~~~~W~~~~~~~~~~~t~~~v~~L~pg~~Y~FRV~A~   83 (108)
T 1v5j_A            6 SGLSPPRGLVAVR-TPRGVLLHWDPPEL-VPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAF   83 (108)
T ss_dssp             CCCCCCEEEEEEE-CSSSEEEEEECCSC-CSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEE
T ss_pred             CCCCCCcceEEEE-eCCEEEEEECCCCC-CCCCCcEEEEEEEeCCCCcEEeeeecCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            5678888898875 56789999998875 66789999999998555798654 346678999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCEEe
Q psy12426        487 NKGGPGEPSKASAPVTC  503 (616)
Q Consensus       487 n~~G~g~~s~~~~~~~~  503 (616)
                      |..|.|++|......|.
T Consensus        84 n~~G~s~pS~~~~v~T~  100 (108)
T 1v5j_A           84 AGSFVSDPSNTANVSTS  100 (108)
T ss_dssp             ETTEEEEECSCCCCCCS
T ss_pred             cCCCCcCCCCCEEEEeC
Confidence            99999999987776554

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.55  E-value=1.7e-15  Score=131.45  Aligned_cols=111  Identities=11%  Similarity=-0.002  Sum_probs=74.0

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.+++..|.|.|+|.|.|..|....+ ....+.+......|.+         ...+..+.|.|.+.+.|.+.+.|++
T Consensus        62 sL~I~~v~~~D~G~Y~C~~~n~~g~~~~~-~~~~l~V~~~~~~p~i---------~~~~~~v~L~C~~~g~p~p~i~W~~  131 (176)
T 1hng_A           62 DLKIKNLTRDDSGTYNVTVYSTNGTRILN-KALDLRILEMVSKPMI---------YWECSNATLTCEVLEGTDVELKLYQ  131 (176)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTCCEEEE-EEEEEEEECCCCCCEE---------EEETTTTEEEEECSSCSSCEEEEEE
T ss_pred             cEEEcccccccCEEEEEEEEeCCCCEEEE-EEEEEEEeCCCCCCEE---------EecCCcEEEEEEecCCCCcEEEEEE
Confidence            47777888888888888887776653101 0111222222222332         1234468999999999999999999


Q ss_pred             CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      ++..+..+.+           +.|.++...|.|.|+|.|.|..|.......+
T Consensus       132 ~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  172 (176)
T 1hng_A          132 GKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV  172 (176)
T ss_dssp             TTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             CCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceecccc
Confidence            9988765443           2334666889999999999998877665544

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.55  E-value=8.1e-14  Score=132.18  Aligned_cols=204  Identities=10%  Similarity=-0.034  Sum_probs=133.6

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC-ceeEE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI-PTKEW  250 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~-~~~~W  250 (616)
                      ..|.|.++...|.|.|+|.|.|  |.  ..  ...+.+.   .+|.+. ..+....+.+|+.+.|.|.+.+ |. +.+.|
T Consensus        57 ~~L~i~~~~~~d~G~Y~C~~~n--g~--~~--~~~l~V~---~~~~~~-~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W  125 (290)
T 2o26_X           57 NEWIQEKAEATRTGTYTCSNSN--GL--TS--SIYVFVR---DPAKLF-LVGLPLFGKEDSDALVRCPLTD-PQVSQYSL  125 (290)
T ss_dssp             SEEEETTCCGGGCEEEEEEESS--SC--EE--EEEEEEE---CSSCCB-CCCCCEEEETTSCEEECCCBSC-CSCEEEEE
T ss_pred             ceEEEeccCHHhCeEEEEEeeC--Cc--cE--EEEEEEe---CCCccc-ccccceEEecCCeEEEeCcCCC-CCCceEEE
Confidence            6899999999999999999998  43  11  1122222   233332 3455678889999999999996 77 89999


Q ss_pred             -EECCeeecccCcEEEEecCCceEEEecCCCCCCcE-EEEEEEEcCCCCc-eeeEEEEEec----CCCCCCCCccceeec
Q psy12426        251 -LCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG-IYTLAVKNSWGTD-KGTAKVTVLD----IPSPPEGPLKPSNIT  323 (616)
Q Consensus       251 -~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g-~y~c~a~n~~g~~-~~~~~l~v~~----~p~~p~~~~~~~~~~  323 (616)
                       .+++..+..+.++.....+   .|.|.++...|.| .|+|.|.|..+.. ...+.+.+..    +|.....+.......
T Consensus       126 ~~~~g~~l~~~~~~~~~~~~---~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~  202 (290)
T 2o26_X          126 IECDGKSLPTDLTFVPNPKA---GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKK  202 (290)
T ss_dssp             EETTSCCCCTTCEEEEETTT---EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCT
T ss_pred             EeCCCcCCCCCCceeeCCCC---CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEec
Confidence             5688777666666555443   8999999999999 9999999985543 3356677653    232211112233456


Q ss_pred             CCeEEEEEeCCCCCCCCceEEEEEEEEeCCC---CCE-----EEc--cccccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        324 KSSCNLEWRAPRDDGGTDILHYVVEKMDMET---GRW-----VPM--GDVSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       324 ~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~---~~~-----~~~--~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      +..+.|.|......  .+. .+.+.+.....   ...     ...  .......+.|.++...+.+.|.|.|.|..|..
T Consensus       203 G~~v~l~C~~~g~p--~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~  278 (290)
T 2o26_X          203 GDTFTVVCTIKDVS--TSV-NSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA  278 (290)
T ss_dssp             TCCEEEEEEEEESS--TTC-EEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEE
T ss_pred             CCcEEEEEEEecCC--cce-eEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcE
Confidence            77899999864322  111 12222211110   000     000  01234578999999999999999999999865

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.55  E-value=1.1e-14  Score=112.33  Aligned_cols=86  Identities=21%  Similarity=0.388  Sum_probs=71.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      ||+|. ..|+++.+.+|+.+.|.|.+.|.|.|.|+|+|||+.|..  .++|....                         
T Consensus         5 PP~i~-~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~-------------------------   58 (100)
T 3knb_A            5 PPKIE-ALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN-------------------------   58 (100)
T ss_dssp             EEEEC-CCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEE-------------------------
T ss_pred             CCEEE-eCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeec-------------------------
Confidence            68887 458999999999999999999999999999999999874  34554432                         


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                         ......|.|.++...|.|.|.|.|.|..|....+
T Consensus        59 ---~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   92 (100)
T 3knb_A           59 ---TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSAT   92 (100)
T ss_dssp             ---CSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ---ccceEEEEEcCCCccCCEEEEEEEEECCCEEEEE
Confidence               1224579999999999999999999999965433

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.55  E-value=3.4e-14  Score=114.85  Aligned_cols=106  Identities=26%  Similarity=0.432  Sum_probs=86.3

Q ss_pred             CCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeC---CC-CceEeEee--cCCccEEEcCC
Q psy12426        399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK---YG-PWEKACIV--PANITATSVPD  472 (616)
Q Consensus       399 ~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~---~~-~~~~~~~~--~~~~~~~~l~~  472 (616)
                      ..+.......+|++|.++.+..++.+++.|+|.+| .+++.+|.+|.|+|+..   .. .|......  ......+++.+
T Consensus         7 ~~~~~~~~~~~P~~P~~l~~~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~   85 (124)
T 1wis_A            7 GTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPD   85 (124)
T ss_dssp             CCCCSCCCCCCCCCCEEEEEESCCSSCEEEEEECC-CCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECS
T ss_pred             ccccccCCCCCCccCCCCEEEEecCCEEEEEEECC-CCCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeCC
Confidence            34444455678999999999999999999999865 46677899999999873   33 78765433  56688999999


Q ss_pred             CCCCCeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426        473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       473 L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      |.|++.|.|||+|+|..|.|++|..+..+++..
T Consensus        86 L~p~t~Y~frV~A~N~~G~s~~S~~~~~~~T~~  118 (124)
T 1wis_A           86 LNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQ  118 (124)
T ss_dssp             CCTTSEECCCCEEECSSCBCCCCCCCCCEECCC
T ss_pred             CCCCCEEEEEEEEEECCccCCCcCCccceEcCC
Confidence            999999999999999999999999877666543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.55  E-value=9e-14  Score=125.28  Aligned_cols=124  Identities=13%  Similarity=0.067  Sum_probs=82.9

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCC-CCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeee----cC
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGE-PSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE----PI  245 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~-~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~----p~  245 (616)
                      ...|.|.+++..|.|.|.|.+.+..+... .......+.+......|.+..  +.  .+.+|+.+.|.|.+.+.    |.
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~--~~--~~~~G~~v~L~C~~~~~~~~~p~  156 (214)
T 2zg1_A           81 NCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF--LE--PLESGRPTRLSCSLPGSCEAGPP  156 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC----C--CCCTTCCEEEEEECTTCCSCSSC
T ss_pred             eEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec--Cc--cccCCCeEEEEEEeccCCCCCCC
Confidence            34799999999999999999998753211 111223344444444566532  12  25689999999999874    88


Q ss_pred             ceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        246 PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       246 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      +.+.|++++..+....      ......|.|..+..+|.|.|+|.|.|..+.......+
T Consensus       157 p~v~W~~~~~~~~~~~------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v  209 (214)
T 2zg1_A          157 LTFSWTGNALSPLDPE------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV  209 (214)
T ss_dssp             CEEEEESSTTSSSCSS------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEE
T ss_pred             ceEEEeCCCCccCCCC------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEE
Confidence            9999999986543211      1234589999999999999999999976554444433

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=8.3e-14  Score=111.89  Aligned_cols=104  Identities=17%  Similarity=0.207  Sum_probs=81.3

Q ss_pred             cCCEEccCCCCCCC-CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCC
Q psy12426        398 QSPITAKDPFGRPD-RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLK  474 (616)
Q Consensus       398 s~~~~~~~~~~~p~-~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~  474 (616)
                      +..+.+.+....|. +|.++++..++.+++.|+|.+|..   +.|.+|.|+|+..++  .+.......+....++|.+|.
T Consensus         6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~---g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~   82 (119)
T 2ee2_A            6 SGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLE---KIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLL   82 (119)
T ss_dssp             SSCCCCCCCSCCCCCCCCSCEEEEEETTEEEEECCCCSC---TTCCEEEEEEEESSSCGGGCEEEEEETTCSEEEECSCC
T ss_pred             CCCEEEECCCcCCCCCCCcEEEEEccCCEEEEEecCCCC---CccceEEEEEEECCCcccCcEEEEcCCCEeEEEECCCC
Confidence            34555666666666 566999999999999999998765   469999999987764  222333445667899999999


Q ss_pred             CCCeEEEEEEEEcCCCCCCCCCCCCCEEec
Q psy12426        475 EGEEYEFRVIAVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       475 p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~  504 (616)
                      |++.|.|+|+|+|..|.|++|....+.|..
T Consensus        83 p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~  112 (119)
T 2ee2_A           83 PDTQYFIEVGACNSAGCGPPSDMIEAFTKK  112 (119)
T ss_dssp             TTCEEEEEEEEECSSSCCCCCCCEEEECCC
T ss_pred             CCCEEEEEEEEEcCCccCCCCCCEEEECCC
Confidence            999999999999999999998876544433

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.54  E-value=1.2e-13  Score=128.57  Aligned_cols=124  Identities=13%  Similarity=0.079  Sum_probs=82.9

Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccC--------------CCceeccCCcceEEEcCCeEE
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKV--------------SPYINRDQLSDIKVRAGSNFE  235 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~--------------~P~~~~~~~~~~~v~~g~~~~  235 (616)
                      ....|.|.+++++|.|.|.|.+.|..+..........+.+.....              .|.+ ...+..+.+.+|+++.
T Consensus        77 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v-~~~p~~~~v~~G~~v~  155 (259)
T 3omz_A           77 KNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKV-TQAQSSVSMPVRKAVT  155 (259)
T ss_dssp             CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEE-ECCCCCEEEETTCCEE
T ss_pred             CeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeee-EEeCCEEEEcCCCCEE
Confidence            445899999999999999999998765211111111233322111              2333 4455678899999999


Q ss_pred             EEEEEeee-cCceeEEEECCe--eec------------ccCcEEEE--ecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        236 FDINVIGE-PIPTKEWLCNDI--TII------------SKDRFKIV--NDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       236 l~c~~~~~-p~~~~~W~~~~~--~~~------------~~~~~~~~--~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      |.|.+.+. +.+.+.|++...  .+.            ...++.+.  .......|.|.+++..|+|.|.|.+.+.
T Consensus       156 L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          156 LNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             ECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             EEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            99998875 788999998431  110            12344443  2233467999999999999999999853

>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}

Probab=99.54  E-value=1.1e-13  Score=122.39  Aligned_cols=178  Identities=15%  Similarity=0.098  Sum_probs=123.2

Q ss_pred             CCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc-cccccceEEeccccCCCeEEEEEEEEecCcC
Q psy12426        313 PEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYTRAENLIEGHDYNFRVKAVNKIGE  391 (616)
Q Consensus       313 p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~  391 (616)
                      |.+ +.+.... ....|.|.++...++ .+ .|.|++..-  ..|... .....+.+.|.+|.++..|.++|+|.++.|.
T Consensus         5 P~n-v~~~s~n-~~~iL~W~pp~~~~~-~v-~Y~V~y~~~--~~w~~~c~~~~~~~c~lt~l~~~~~Y~~rV~A~~~~~~   78 (201)
T 3lqm_A            5 PEN-VRMNSVN-FKNILQWESPAFAKG-QL-TFTAQYLSY--RIFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEFADEH   78 (201)
T ss_dssp             CEE-EEEEEET-TEEEEEEECCCCSSS-CC-EEEEEEEET--TEEEEEEEEESSSEEECTTSCSSSCEEEEEEEEETTEE
T ss_pred             Ccc-cEEEEEC-CceEEEECCCCCCCC-Ce-EEEEEEEEC--CCcccCcCccCCCEEECCCCccCCCEEEEEEEecCCCc
Confidence            444 5554444 457899998766544 44 599999875  356532 2345678999999999999999999999887


Q ss_pred             CCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCC---------cceeEEEEEeeCCCCceEeEeec
Q psy12426        392 SLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS---------PISQYIIEKKPKYGPWEKACIVP  462 (616)
Q Consensus       392 ~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~---------~i~~Y~i~~~~~~~~~~~~~~~~  462 (616)
                      +.++..  .+ .......+++| .+.+ ....+++.|.|.+|...+++         .+..|+|.|.+.++.-..  ...
T Consensus        79 S~~s~~--~f-~~~~~t~~~PP-~v~~-~~~~~si~v~w~~P~~~~~~~~~~~~~~~~~l~Y~v~y~~~~~~~~~--~~~  151 (201)
T 3lqm_A           79 SDWVQI--TF-SPVDDTIIGPP-GMQV-EVLADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKF--QIT  151 (201)
T ss_dssp             CCCEEE--EE-CHHHHSBCCCC-EEEE-EEETTEEEEEEECCEEECSSCEEEHHHHCTTCEEEEEEEETTCCCCE--EEC
T ss_pred             Ccceee--ee-eecccCeeCCC-EEEE-EEeCCEEEEEEcCCCccCCCcccCHHHhCCceEEEEEEEECCCCcEE--EEE
Confidence            776531  11 11112345555 5666 44578999999988643322         378999998876652222  223


Q ss_pred             CCccEEEcCCCCCCCeEEEEEEEEcC--CCCCCCCCCCCCEEe
Q psy12426        463 ANITATSVPDLKEGEEYEFRVIAVNK--GGPGEPSKASAPVTC  503 (616)
Q Consensus       463 ~~~~~~~l~~L~p~t~Y~~~v~a~n~--~G~g~~s~~~~~~~~  503 (616)
                      .....++|.+|.|++.|.|+|+|.+.  .|.|.+|....+.+.
T Consensus       152 ~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~  194 (201)
T 3lqm_A          152 PQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTT  194 (201)
T ss_dssp             CSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCCEEEECC
T ss_pred             ecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCCEeEEeC
Confidence            45678999999999999999999986  678888876555443

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.54  E-value=6.9e-15  Score=114.96  Aligned_cols=86  Identities=20%  Similarity=0.295  Sum_probs=72.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||+|. ..|+++.|.+|+.+.|.|.+.|+|.|.|+|+|||..|....+|.....                          
T Consensus        13 pP~f~-~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~--------------------------   65 (107)
T 3knb_B           13 PPCFL-RFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD--------------------------   65 (107)
T ss_dssp             EEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEE--------------------------
T ss_pred             CCEEE-eCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeec--------------------------
Confidence            57776 458999999999999999999999999999999999986666644321                          


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                        .....|.|.++...|.|.|.|.|.|..|....+
T Consensus        66 --~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   98 (107)
T 3knb_B           66 --GAEHGLLLTAALPTDAGVYVCRARNAAGEAYAA   98 (107)
T ss_dssp             --TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             --CceEEEEEecCChhhCEEEEEEEEECCCEEEEE
Confidence              124579999999999999999999999965443

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.54  E-value=2.9e-14  Score=112.55  Aligned_cols=96  Identities=26%  Similarity=0.466  Sum_probs=78.4

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      ..+|.+|..+.+..++.+++.|.|.+|..+++.+|.+|.|+|+..+.  .|....  .+....+++.+|.|++.|.|||+
T Consensus         5 ~~~P~~P~~p~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~v~~L~p~t~Y~frV~   82 (109)
T 1x5x_A            5 SSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKY--DGEDLAYTVKNLRRSTKYKFKVI   82 (109)
T ss_dssp             CCCCCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEE--EESCSEEEEESCCSSCEEEEEEE
T ss_pred             CCCCcCCCCCEEEEccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeE--eCCccEEEECCCCCCCEEEEEEE
Confidence            35778888888999999999999998877767689999999988765  455433  23467999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCEEec
Q psy12426        485 AVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~~~~~  504 (616)
                      |+|..|.|++|......|..
T Consensus        83 A~n~~G~s~~S~~~~~~T~~  102 (109)
T 1x5x_A           83 AYNSEGKSNPSEVVEFTTCP  102 (109)
T ss_dssp             EECSSCEEEECCCEEEECCC
T ss_pred             EEeCCCCcCCccCEEeEeCC
Confidence            99999999988765544443

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.54  E-value=2.2e-14  Score=129.72  Aligned_cols=127  Identities=9%  Similarity=-0.006  Sum_probs=79.3

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCC---CCCCCCCCCEEecccc-CCCceeccCCcceEEEcCCeEEEEEEEee-ecC
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGP---GEPSDPTAPHIARAKK-VSPYINRDQLSDIKVRAGSNFEFDINVIG-EPI  245 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~---~~~s~~~~~~~~~~~~-~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-~p~  245 (616)
                      ...|.|.+++.+|.|.|+|.|.|..|.   ...+. ...+.+.... .+|.+....+ ...+..|+.+.|.|.+.+ .|.
T Consensus        74 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~-~~~l~V~~~~~~~P~~~~~~~-~~~~~~~~~v~L~C~~~g~~p~  151 (218)
T 3s96_B           74 DRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGG-GTKVTVLGQPKSTPTLTVFPP-SSEELKENKATLVCLISNFSPS  151 (218)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECC-CEEEEEESCCCBCCEEEEECC-CHHHHHTTEEEEEEEEEEEBSS
T ss_pred             eEEEEEccCCcccCEEEEEEEecCCCCceeEEEcC-cEEEEEecCCCCCceEEeeCC-CcccccCCcEEEEEEECcccCC
Confidence            347999999999999999999998761   11111 1123333222 4565543222 222345689999999998 466


Q ss_pred             c-eeEEEECCeeecccCcEE--EEecCC---ceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        246 P-TKEWLCNDITIISKDRFK--IVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       246 ~-~~~W~~~~~~~~~~~~~~--~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      + .+.|++++..+..+....  ....+.   ...|.|......|.|.|+|.|.|..+...
T Consensus       152 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~  211 (218)
T 3s96_B          152 GVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVE  211 (218)
T ss_dssp             CCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEE
T ss_pred             CeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccc
Confidence            6 899999999876421111  111111   12477777777789999999999866443

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.53  E-value=2.5e-14  Score=128.88  Aligned_cols=125  Identities=8%  Similarity=-0.053  Sum_probs=81.0

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC--cee
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI--PTK  248 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~--~~~  248 (616)
                      ...|.|.+++.+|.|.|+|.|.|..+.....  ...+.+.....+|.+.... ....+..|+.+.|.|.+.+.++  +.+
T Consensus        70 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~--~~~l~V~~~~~~p~v~~~~-~~~~~~~~~~v~l~C~~~g~~p~~~~v  146 (213)
T 3r06_A           70 DSSFTISSLESEDIGSYYCQQYYNYPWTFGP--GTKLEIKRADAKPTVSIFP-PSSEQLGTGSATLVCFVNNFYPKDINV  146 (213)
T ss_dssp             EEEEEESSCCGGGCSEEEEEECSSSSCEECC--CEEEEECCCCBCCEEEEEC-CCHHHHTTTEEEEEEEEEEEBSSCEEE
T ss_pred             EEEEEECCCCcccCEEEEEecccCCceEEcC--CceEEEeccCCCceeeeeC-CCceecCCCCcEEEEEEeeecCCceEE
Confidence            3478999999999999999998875432111  1223333335566664322 2223346778999999998764  389


Q ss_pred             EEEECCeeecccC--cEEEEec--CC---ceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        249 EWLCNDITIISKD--RFKIVND--DK---STKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       249 ~W~~~~~~~~~~~--~~~~~~~--~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      .|++++..+..+.  .......  +.   ...|.|......|.|.|+|.|.|.....
T Consensus       147 ~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          147 KWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             EEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             EEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence            9999998876431  1111111  11   1357777777778999999999975443

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.53  E-value=2.9e-14  Score=114.59  Aligned_cols=100  Identities=17%  Similarity=0.265  Sum_probs=83.3

Q ss_pred             cCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCC
Q psy12426        398 QSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEG  476 (616)
Q Consensus       398 s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~  476 (616)
                      +..+.+.+....|++|.++++..++.+++.|+|.+|...++ .|.+|.|+|+..+. .+............++|.+|.|+
T Consensus         6 S~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~   84 (119)
T 1wfn_A            6 SGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTAL   84 (119)
T ss_dssp             SCCCSCCSSCCSCCCCSCCEEESCCSSEEEEECCCCTTCCS-CCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTT
T ss_pred             CCCEEEECCCCCCCCCCceEEEECCCCEEEEEEcCCCCCCC-cEEEEEEEEEECCCCCceEEEEeCCCceEEEEcCCCCC
Confidence            45666777778999999999999999999999998875545 59999999998765 33333445567889999999999


Q ss_pred             CeEEEEEEEEcCCCCCCCCCCC
Q psy12426        477 EEYEFRVIAVNKGGPGEPSKAS  498 (616)
Q Consensus       477 t~Y~~~v~a~n~~G~g~~s~~~  498 (616)
                      +.|.|+|+|.|..|.|++|...
T Consensus        85 t~Y~~~V~A~n~~G~g~~S~~~  106 (119)
T 1wfn_A           85 TTYTIEVAAMTSKGQGQVSAST  106 (119)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEE
T ss_pred             CEEEEEEEEEcCCccCCCCCCE
Confidence            9999999999999999988764

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.53  E-value=1.7e-13  Score=126.62  Aligned_cols=129  Identities=12%  Similarity=-0.009  Sum_probs=77.8

Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEee-ecCc-e
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIP-T  247 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-~p~~-~  247 (616)
                      ....|.|.+++.+|.|.|+|.+.+..+....   ...+.+   ..+|.+.....  ..+..|..+.|.|.+.+ .|.+ .
T Consensus        80 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~---~~~L~V---~~~P~v~~~~~--~~~~~~~~~~L~C~~~g~~P~pi~  151 (248)
T 3pv7_A           80 GDASLRLPGIQLEEAGEYRCEVVVTPLKAQG---TVQLEV---VASPASRLLLD--QVGMKENEDKYMCESSGFYPEAIN  151 (248)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEEEETTEEEEE---EEEEEE---EBCCEEEEECC----------CEEEEEEEEEBSSCCE
T ss_pred             CcEEEEeCCCCHHHCeEEEEEEEeCCcccee---EEEEEE---ecCCceEEecC--CccccCCCcEEEEEEccEECCCeE
Confidence            4457999999999999999999997664221   111222   23566543222  23446777889999999 7888 9


Q ss_pred             eEEEECCeeecccC------c-EEEEecC-C----ceEEEecCCCCCCcEEEEEEEEcCCCCcee--eEEEEE
Q psy12426        248 KEWLCNDITIISKD------R-FKIVNDD-K----STKLKVFDSKRGDSGIYTLAVKNSWGTDKG--TAKVTV  306 (616)
Q Consensus       248 ~~W~~~~~~~~~~~------~-~~~~~~~-~----~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~--~~~l~v  306 (616)
                      +.|++++..+....      . ....... .    ...|.|......|.|.|+|.|.|..+....  .+.|.|
T Consensus       152 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          152 ITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             EEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             EEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            99999986432110      0 0111111 1    246888888888999999999998876544  444444

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.53  E-value=3.6e-14  Score=128.35  Aligned_cols=127  Identities=15%  Similarity=0.068  Sum_probs=79.2

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCC--CCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEee-ecCc-
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPG--EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIP-  246 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~--~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-~p~~-  246 (616)
                      ..|.|.+++.+|.|.|+|.|.|..+..  .... ...+.+.. ...+|.+....+. ..+..|+.+.|.|.+.+ .|.+ 
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~-~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~  156 (219)
T 1c1e_H           79 AYLQINNLKNEDMATYFCARGTTIVRAMDYWGQ-GTSLTVSSAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPV  156 (219)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTTEEEEECC-CEEEEECCCCCBCCEEEEECCC-SSSCCSSEEEEEEEEEEEBSSCC
T ss_pred             EEEEECCCCcccCEEEEEEEeccCcccceeecC-ceEEEEecCCCCCCeEEEecCc-cccccCCeEEEEEEcccccCCCe
Confidence            479999999999999999999976321  1111 11233332 2234555322222 23468999999999998 8888 


Q ss_pred             eeEEEECCeeecccCcEEEEecCC---ceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        247 TKEWLCNDITIISKDRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       247 ~~~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      .+.|++++..+...........+.   ...|.|..... |.|.|+|.|.|..|.....
T Consensus       157 ~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~  213 (219)
T 1c1e_H          157 TVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVD  213 (219)
T ss_dssp             EEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEE
T ss_pred             EEEEEeCCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEE
Confidence            999999987642110000111111   13678844443 5699999999977665433

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.53  E-value=1.5e-14  Score=112.97  Aligned_cols=94  Identities=24%  Similarity=0.381  Sum_probs=77.3

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEe---EeecCCccEEEcCCCCCCCeEEEE
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKA---CIVPANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~---~~~~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      ...|++|.++.+...+.+ +.|+|.+|..+++.+|.+|.|+|+..+. .|...   ....+....++|.+|.|++.|.|+
T Consensus         4 ~~~P~~P~~~~~~~~~~~-v~l~W~~P~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   82 (105)
T 2haz_A            4 MDTPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   82 (105)
T ss_dssp             CCCCCCCEEEEEEECSSC-EEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEE
T ss_pred             CCCCcCCCCCEEEEcCCc-EEEEEcCCcccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCCEEEEE
Confidence            467888888888888877 9999999877777779999999998876 57532   122235689999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCE
Q psy12426        483 VIAVNKGGPGEPSKASAPV  501 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~~~  501 (616)
                      |+|+|..|.|++|....+.
T Consensus        83 V~A~n~~G~g~~S~~~~~~  101 (105)
T 2haz_A           83 LAALNGKGLGEISAASEFK  101 (105)
T ss_dssp             EEEEETTEECCCCCCEEEE
T ss_pred             EEEEcCCccCCCcCCEeeE
Confidence            9999999999999866543

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.53  E-value=3.4e-14  Score=131.86  Aligned_cols=124  Identities=8%  Similarity=-0.050  Sum_probs=81.2

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeec-C-ceeE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP-I-PTKE  249 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p-~-~~~~  249 (616)
                      ..|.|.+++..|.|.|+|.|.|..+......  ..+.+.....+|.+....+... ...|+.+.|.|.+.+.+ . +.+.
T Consensus       113 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~--~~l~V~~~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~  189 (254)
T 2c1o_A          113 FTLKISRVEAEDLGIYYCVQGSHFPPTFGAG--TKLELKRADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVK  189 (254)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSSSSCEEBCC--EEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECcCCcccCEEEEEEEEcCcceEecCC--EEEEECCCCCCCeeEeecCChh-hccCCcEEEEEEEecccCCCcEEE
Confidence            3789999999999999999988754311111  1233333334566543222222 23577999999999854 3 4699


Q ss_pred             EEECCeeecccCc--EEEEecCC-----ceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        250 WLCNDITIISKDR--FKIVNDDK-----STKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       250 W~~~~~~~~~~~~--~~~~~~~~-----~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      |++++..+.....  .......+     ...|.|.++...|.|.|+|.|.|.....
T Consensus       190 W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          190 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             EEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             EEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            9999988764411  11111111     3479999999999999999999976544

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.52  E-value=5.6e-14  Score=127.69  Aligned_cols=130  Identities=9%  Similarity=-0.036  Sum_probs=81.0

Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE-eeecCcee
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTK  248 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~-~~~p~~~~  248 (616)
                      ...+|.|.+++.+|.|.|+|.|.|..|.....     ........+|.+... +.......+..+.+.|.+ .+.|.+.+
T Consensus        81 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~~~~~P~~~~  154 (225)
T 4fmk_A           81 RDATLAFRGLRVEDEGNYTCEFATFPNGTRRG-----VTWLRVIAQPENHAE-AQEVTIGPQSVAVARCVSTGGRPPARI  154 (225)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEEETTEEEEE-----EEEEEEEBCCEEEEE-ECCBCCSSSCEEEEEEEEEEEBSCCEE
T ss_pred             CcEEEEEccCCHHHCcceEEEEEeCCCcceee-----eeeeeeecCCceeec-ccceeecceeeeeeeeeecCCCCCCEE
Confidence            34478999999999999999998876643221     111111223332211 222334455666666655 56688899


Q ss_pred             EEEECCeeecccCcEEEEecCC---ceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        249 EWLCNDITIISKDRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       249 ~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      .|.+++..+...........+.   .+.|.|.++...|.|.|+|.|.|..|.......++
T Consensus       155 ~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~  214 (225)
T 4fmk_A          155 TWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVT  214 (225)
T ss_dssp             EEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred             EEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEE
Confidence            9999876654322222211221   23699999999999999999999888765554444

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.52  E-value=1.7e-13  Score=125.93  Aligned_cols=119  Identities=10%  Similarity=-0.009  Sum_probs=73.4

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecccc----------CCCceeccCCcceEEEcCCeEEEEEEEee
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK----------VSPYINRDQLSDIKVRAGSNFEFDINVIG  242 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~----------~~P~~~~~~~~~~~v~~g~~~~l~c~~~~  242 (616)
                      .|.|.+++++|.|.|.|.|.|..+.....  ...+.+....          .++.+ ...+....+.+|+++.|.|.+.+
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~--~~~L~V~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~G~~v~L~C~~~g  148 (242)
T 2znx_A           72 TLSINSVETEDFGMYFCQQSNSXPYTFGG--GTKLEITGGGGSGGGGSGGGGSDIQ-LQESGPSLVKPSQTLSLTCSVTG  148 (242)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECC--CEEEEEC---------------CCE-EEEECCSEECTTSCEEEEEEEES
T ss_pred             EEEECCCChHHCEEEEEeEecCCceEECC--CEEEEEcCCCCCCccccccccccee-eecCCcceecCCCeEEEEEEEEc
Confidence            57777777777777777777654321101  0112222111          11112 12222345889999999999998


Q ss_pred             ec--CceeEEEECC--eeec----------------ccCcEEEEe--cCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        243 EP--IPTKEWLCND--ITII----------------SKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       243 ~p--~~~~~W~~~~--~~~~----------------~~~~~~~~~--~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      .+  .+.+.|++++  ..+.                ...++.+..  ......|.|.+++..|+|.|.|.|.|.
T Consensus       149 ~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          149 DSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             SCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             cccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            76  4789999842  2210                134555543  234568999999999999999999873

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A

Probab=99.52  E-value=1.7e-12  Score=129.56  Aligned_cols=212  Identities=13%  Similarity=0.075  Sum_probs=128.6

Q ss_pred             ecCCCCCCcEEEEEEEEcCCCC---c---eeeEEEEEecCCCCCCCC--ccceeecCCeEEEEEeCCCCCCCCceEEEEE
Q psy12426        276 VFDSKRGDSGIYTLAVKNSWGT---D---KGTAKVTVLDIPSPPEGP--LKPSNITKSSCNLEWRAPRDDGGTDILHYVV  347 (616)
Q Consensus       276 i~~l~~~~~g~y~c~a~n~~g~---~---~~~~~l~v~~~p~~p~~~--~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v  347 (616)
                      +.+|.+...|.+++.|.+..|.   +   ..+..+.+...+..|..+  +.+.......+.+.|+++....+  ...|.|
T Consensus       175 ~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t~~~~~~~p~~l~c~~~~~~~l~c~W~~~~~~~~--~~~y~l  252 (419)
T 2gys_A          175 PEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVAS--SVSFGL  252 (419)
T ss_dssp             TTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCCTTSCEEEEEEECSSSEEEEEEEEEHHHHT--TCCEEE
T ss_pred             hhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeeccccccCCCceEEEEECCceEEEeEEECCCCCCC--ceeEEE
Confidence            3489999999999999986432   2   223445554444433333  45555667789999996422111  245888


Q ss_pred             EEEeCCC-----CC-EEEccc--c---------ccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEccCCCCCC
Q psy12426        348 EKMDMET-----GR-WVPMGD--V---------SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRP  410 (616)
Q Consensus       348 ~~~~~~~-----~~-~~~~~~--~---------~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p  410 (616)
                      .|+....     .. +..+..  .         ....+.+.+|.+.+.|.++|.|.++.+.-..   ...+       .|
T Consensus       253 ~y~~~~~~g~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~~~l~~~~~y~i~V~a~~~~~~~~~---~~~v-------~p  322 (419)
T 2gys_A          253 FYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKS---SVNI-------QM  322 (419)
T ss_dssp             EEECC-----CCCCCCEECCCEEEECCTTTEEEEEEEEECSCTTTCCEEEEEEEECCCCEEEEG---GGSB-------CC
T ss_pred             EEEecCccccccCcccccCCCcccccCCCcceeEEeEEECccCCccCEEEEEEEEccCCccccc---eEEE-------EE
Confidence            8865421     11 222211  0         1225667788889999999988754432110   1111       34


Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEe--EeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA--CIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~--~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      .+| .+.+.. ..+.+.|+|.+|.......+..|+|.|+..+..|...  .... ..+.+.|.+|.|++.|.|+|+|.+.
T Consensus       323 ~PP-~l~v~~-~~~~l~l~W~~P~~~~~~~~l~Yev~y~~~~~~w~~~~~~~~~-~~~~~~l~~L~p~t~Y~~qVRa~~~  399 (419)
T 2gys_A          323 APP-SLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQ-NAHSMALPALEPSTRYWARVRVRTS  399 (419)
T ss_dssp             CCC-EEEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEE-SCSEEECCCCCSSCCCEEEEEEEEC
T ss_pred             CCC-CeEEEE-eCCeEEEEECCCcccccccceEEEEEEEcCCCCcceeeccccc-cccEEEeccCCCCCeEEEEEEEEEc
Confidence            555 355444 4789999999885322224779999999877666521  1222 5679999999999999999999998


Q ss_pred             CC--CCCCCCCCCCEE
Q psy12426        489 GG--PGEPSKASAPVT  502 (616)
Q Consensus       489 ~G--~g~~s~~~~~~~  502 (616)
                      .|  .|.+|..+..+.
T Consensus       400 ~g~~~G~wS~WS~~~~  415 (419)
T 2gys_A          400 RTGYNGIWSEWSEARS  415 (419)
T ss_dssp             CTTCCBCCCCCCCCEE
T ss_pred             CCCCCCccCCCCCCeE
Confidence            74  566777666544

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.52  E-value=7.4e-14  Score=124.21  Aligned_cols=71  Identities=17%  Similarity=0.130  Sum_probs=54.7

Q ss_pred             EcCCeEEEEEEEeeecCceeEEEECCeeecccC--cEEEEecCCceEEEecCC-CCCCcEEEEEEEEcCCCCc-eeeEEE
Q psy12426        229 RAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDS-KRGDSGIYTLAVKNSWGTD-KGTAKV  304 (616)
Q Consensus       229 ~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l-~~~~~g~y~c~a~n~~g~~-~~~~~l  304 (616)
                      .+|+.+.|.|.  +.|.+.+.|++++..+....  +......   ..|.|.++ ...|+|.|+|.|.|..|.. +....+
T Consensus       126 ~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~---~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l  200 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDE---DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYL  200 (204)
T ss_dssp             EETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEET---TEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEE
T ss_pred             ecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCC---CEEEEeeCCccccCEEEEEEeccCCCCceeEEEEE
Confidence            38999999998  78999999999998875431  2222222   38999999 9999999999999998853 333333

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.51  E-value=2.4e-13  Score=126.19  Aligned_cols=72  Identities=18%  Similarity=0.268  Sum_probs=54.3

Q ss_pred             cceEEEcCCeEEEEEEEeeec--CceeEEEEC--Ceee-----------------cccCcEEEEec--CCceEEEecCCC
Q psy12426        224 SDIKVRAGSNFEFDINVIGEP--IPTKEWLCN--DITI-----------------ISKDRFKIVND--DKSTKLKVFDSK  280 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p--~~~~~W~~~--~~~~-----------------~~~~~~~~~~~--~~~~~l~i~~l~  280 (616)
                      ....+.+|+++.|.|.+.+.+  .+.+.|+++  +..+                 ....++.+...  .....|.|.+++
T Consensus       142 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  221 (256)
T 3ux9_B          142 GGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLR  221 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCC
Confidence            345688999999999999876  789999986  3221                 01135555543  345679999999


Q ss_pred             CCCcEEEEEEEEcCC
Q psy12426        281 RGDSGIYTLAVKNSW  295 (616)
Q Consensus       281 ~~~~g~y~c~a~n~~  295 (616)
                      .+|+|.|+|.|.|..
T Consensus       222 ~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          222 AEDTAVYYCARYIDF  236 (256)
T ss_dssp             GGGCEEEEEEEEETT
T ss_pred             hhhCEEEEEEEEcCC
Confidence            999999999999853

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.51  E-value=4.5e-14  Score=129.55  Aligned_cols=127  Identities=7%  Similarity=-0.041  Sum_probs=83.9

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeec--Ccee
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP--IPTK  248 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p--~~~~  248 (616)
                      ...|.|.+++.+|.|.|+|.+.|..+.....  ...+.+.....+|.+....+ ...+..|+.+.|.|.+.+.+  .+.+
T Consensus        93 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~--~~~l~V~~~~~~p~v~~~~~-~~~~~~g~~v~l~C~~~~~~p~~~~v  169 (237)
T 3sob_L           93 DFTLTISSLQPEDFATYYCQQSYTTPPTFGQ--GTKVEIKRTVAAPSVFIFPP-SDEQLKSGTASVVCLLNNFYPREAKV  169 (237)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSSSCEECC--CEEEEEECCCBCCEEEEECC-CHHHHHHTEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEEECCCChhhCeEEEEeeccCCceEEcC--cEEEEEecCCCCCceEEeCC-ChhhccCCceEEEEEEcccCCCceEE
Confidence            3479999999999999999998876531111  11244434455666643222 22233588899999999854  4799


Q ss_pred             EEEECCeeecccC-c-EEEEec-CC----ceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        249 EWLCNDITIISKD-R-FKIVND-DK----STKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       249 ~W~~~~~~~~~~~-~-~~~~~~-~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      .|++++..+..+. . ...... ++    ...|.|.....+|.|.|+|.|.|.......
T Consensus       170 ~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  228 (237)
T 3sob_L          170 QWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV  228 (237)
T ss_dssp             EEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred             EEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCce
Confidence            9999998876421 0 001111 11    246888888888999999999997654443

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.51  E-value=7.7e-15  Score=132.07  Aligned_cols=124  Identities=12%  Similarity=0.004  Sum_probs=79.7

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCC-CCCCCCCCEEeccc-cCCCceeccCCcceEEEcCCeEEEEEEEeee-cC-ce
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPG-EPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PI-PT  247 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~-~~s~~~~~~~~~~~-~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~-~~  247 (616)
                      ..|.|.+++.+|.|.|+|.|.|..+.. .... ...+.+... ..+|.+....+ ...+..|+.+.|.|.+.+. |. +.
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~-~~~l~V~~~~~~~p~v~~~~~-~~~~~~g~~v~L~C~~~g~~p~~~~  146 (212)
T 1nfd_E           69 ATLTISGAQPEDEAAYYCLSSYGDNNDLVFGS-GTQLTVLRGPKSSPKVTVFPP-SPEELRTNKATLVCLVNDFYPGSAT  146 (212)
T ss_dssp             EEEEETTCCGGGCSEEEEEEEETTTTEEEECC-CEEEEEECCCCBCCEEECCCC-CHHHHHTTEECCCEEEEEEBSSCCE
T ss_pred             EEEEECcCCcccCEEEEEEEEcccCcccccCC-ceEEEEccCCCCCCEEEeeCC-chHhccCCceEEEEEEEeeECCccE
Confidence            378899999999999999998732211 1111 112333221 24565543222 2223578999999999988 44 79


Q ss_pred             eEEEECCeeecccCcEE-EEecCC----ceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        248 KEWLCNDITIISKDRFK-IVNDDK----STKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       248 ~~W~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      +.|++++..+....... ....++    ...|.|.++...|.|.|+|.|.|..+.
T Consensus       147 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          147 VTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             EEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             EEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            99999998876442211 000010    135888899989999999999997665

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.51  E-value=5e-13  Score=126.37  Aligned_cols=138  Identities=12%  Similarity=0.083  Sum_probs=89.8

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCC-CCCC--CCCCCCCEEeccc-------------cCCCceeccCCcceEEEcCCeE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKG-GPGE--PSDPTAPHIARAK-------------KVSPYINRDQLSDIKVRAGSNF  234 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~-g~~~--~s~~~~~~~~~~~-------------~~~P~~~~~~~~~~~v~~g~~~  234 (616)
                      ...|.|.+++++|.|.|.|.+.|.. |...  ... ...+.+...             ..++.+ ...+..+.+.+|+++
T Consensus       100 ~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~-~~~L~V~~~~~~~~~~~~~~~~~~~~~v-~~~p~~~~v~~G~~v  177 (291)
T 2gki_A          100 TAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQ-GTSVTVSSRGGGGSGGGGSGGGGSDLVM-SQSPSSLAVSAGEKV  177 (291)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECC-CEEEEECC----------------CCCE-ECSCSEEEEETTSCE
T ss_pred             EEEEEECcCCHHHCEEEEEEEeccccccccceeCC-CcEEEEecCCccccccccCCCCCccceE-EcCCCEEEEcCCCcE
Confidence            3479999999999999999999874 2110  010 112332220             012223 334556789999999


Q ss_pred             EEEEEEeeecCc------eeEEEECC--ee---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        235 EFDINVIGEPIP------TKEWLCND--IT---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       235 ~l~c~~~~~p~~------~~~W~~~~--~~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +|.|.+.+.+.+      .+.|+++.  ..   +.         ...++.+...+....|.|.+++.+|+|.|.|.|.|.
T Consensus       178 ~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  257 (291)
T 2gki_A          178 TMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYY  257 (291)
T ss_dssp             EEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            999999988776      89999963  21   11         134666555555678999999999999999999985


Q ss_pred             CCCc-eeeEEEEEecCC
Q psy12426        295 WGTD-KGTAKVTVLDIP  310 (616)
Q Consensus       295 ~g~~-~~~~~l~v~~~p  310 (616)
                      .... .....|.+...+
T Consensus       258 ~~~~fg~gt~l~v~~~~  274 (291)
T 2gki_A          258 HMYTFGSGTKLEIKHHH  274 (291)
T ss_dssp             TEEEECCCEEEEEECC-
T ss_pred             CceEEcCCEEEEEEeeE
Confidence            3321 223344554443

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.51  E-value=8.1e-14  Score=112.27  Aligned_cols=102  Identities=20%  Similarity=0.195  Sum_probs=84.3

Q ss_pred             CEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCC
Q psy12426        400 PITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGE  477 (616)
Q Consensus       400 ~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t  477 (616)
                      .+.+.+...+|++|.++++...+.+++.|.|.+|. ..++ .|.+|.|+|+..+. .|............++|.+|.|++
T Consensus         8 ~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   86 (120)
T 1x5f_A            8 EHAPATTGPLPSAPRDVVASLVSTRFIKLTWRTPASDPHG-DNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPAT   86 (120)
T ss_dssp             SCCCCCCCCCCCCCEEEEEEEECSSCEEEEEECCSSCSSC-CSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTC
T ss_pred             CEEecCCCCCCCCCCCcEEEecCCCEEEEEECCCCCCCCC-cEEEEEEEEEECCCCCceEEEeccCCccEEEeCCCCCCC
Confidence            34455667889999999999999999999999887 4444 79999999998865 566555556678899999999999


Q ss_pred             eEEEEEEEEcCCCCCCCCCCCCCEE
Q psy12426        478 EYEFRVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       478 ~Y~~~v~a~n~~G~g~~s~~~~~~~  502 (616)
                      .|.|+|+|+|..|.|++|....+.|
T Consensus        87 ~Y~~~V~A~n~~G~g~~S~~~~~~T  111 (120)
T 1x5f_A           87 VYIFRVMAQNKHGSGESSAPLRVET  111 (120)
T ss_dssp             EEEEEEEEECSSCEEEECCCEEEEC
T ss_pred             EEEEEEEEECCCccCCCCCCEEEEe
Confidence            9999999999999999887655433

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.51  E-value=9.1e-14  Score=126.23  Aligned_cols=137  Identities=17%  Similarity=0.083  Sum_probs=81.5

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCc-e
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-T  247 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~-~  247 (616)
                      ...|.|.+++.+|.|.|.|.+.+..+... .. ...+.+.. ...+|.+....+. ..+..|+.+.|.|.+.+. |.+ .
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~-~~-~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~  154 (227)
T 1mju_H           78 TAYMQLSSLTSDDSAVYYCANKLGWFPYW-GQ-GTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVT  154 (227)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEE-CC-CEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSCCE
T ss_pred             eEEEEECCCCcccCEEEEEEECCCCceEE-cC-cEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCCeE
Confidence            34899999999999999999998632111 11 11233332 2244555432222 245679999999999986 766 9


Q ss_pred             eEEEECCeeecc--cCcEEEEecC---CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCC
Q psy12426        248 KEWLCNDITIIS--KDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP  313 (616)
Q Consensus       248 ~~W~~~~~~~~~--~~~~~~~~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p  313 (616)
                      +.|++++..+..  .... . ..+   ..+.|.|.....++ |.|+|.|.|..+.......+.+..+|..|
T Consensus       155 v~W~~~g~~~~~~~~~~~-~-~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~~  222 (227)
T 1mju_H          155 LTWNSGSLSSGVHTFPAV-L-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKP  222 (227)
T ss_dssp             EEEGGGTBCTTEEECCCE-E-ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC----
T ss_pred             EEEecCCCcCCcEECCce-e-cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCCC
Confidence            999999875421  1111 1 111   12478899988877 99999999976655555555555554433

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.51  E-value=4.6e-14  Score=126.85  Aligned_cols=127  Identities=9%  Similarity=-0.030  Sum_probs=83.3

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeeec--Cce
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP--IPT  247 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p--~~~  247 (616)
                      ...|.|.+++++|.|.|+|.|.|..|..... ....+.+.. ...+|.+....+ ...+..|+.+.|.|.+.+.+  .+.
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~-~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~l~C~~~g~~p~~~~  144 (211)
T 3tv3_L           67 TASLTVSGLQTDDEAVYYCGSLVGNWDVIFG-GGTKLTVLGQPKAAPSVTLFPP-SSEELQANKATLVCLISDFYPGAVT  144 (211)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEETTTEEEEC-CCEEEEECCSCCBCCEEEEECC-CHHHHHTTCEEEEEEEEEEBSSCCE
T ss_pred             EEEEEECCCChhHCEEEEEEEecCCCceeEC-CCceEEEeCCCCcCCeeEecCC-chhhhcCCCeEEEEEeeeecCCCeE
Confidence            3479999999999999999999987621111 111233332 224666543222 22233799999999999863  478


Q ss_pred             eEEEECCeeecccCcE--EEEecCC----ceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        248 KEWLCNDITIISKDRF--KIVNDDK----STKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       248 ~~W~~~~~~~~~~~~~--~~~~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      +.|++++..+..+...  .....+.    ...|.|..+...|.|.|+|.|.|..+...
T Consensus       145 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~  202 (211)
T 3tv3_L          145 VAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE  202 (211)
T ss_dssp             EEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEE
T ss_pred             EEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEE
Confidence            9999999987542111  0111111    14688888888899999999999765443

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=7.8e-14  Score=111.95  Aligned_cols=108  Identities=23%  Similarity=0.398  Sum_probs=86.7

Q ss_pred             CCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCC
Q psy12426        399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGE  477 (616)
Q Consensus       399 ~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t  477 (616)
                      ....+.+....|++|.++++..++.+++.|+|.+|..+ + .|.+|.|+|+..+. .|............++|.+|.|++
T Consensus         7 ~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~-g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   84 (118)
T 2yrz_A            7 GSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCE-R-PLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNH   84 (118)
T ss_dssp             SCCTTSSSCSCCCCCCCCEECCCBTTEEEEECCCCCCS-S-CEEEEEEEEEBSSSCCEEEEEESCTTCCEEEEESCCTTC
T ss_pred             CcceeecCCCCCCCCCceEEEeCCCCEEEEEeCCCCCC-C-CccEEEEEEEECCCCceEEEEcCCCCcCEEEeCCCCCCC
Confidence            34556667789999999999999999999999987654 3 79999999998766 666655555678899999999999


Q ss_pred             eEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCC
Q psy12426        478 EYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP  510 (616)
Q Consensus       478 ~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p  510 (616)
                      .|.|+|+|+|..|.|++|..  .+++.+...+|
T Consensus        85 ~Y~~~V~A~n~~G~g~~S~~--~~~~~t~~~~p  115 (118)
T 2yrz_A           85 SYVFRVRAQSQEGWGREREG--VITIESQVSGP  115 (118)
T ss_dssp             EEEEEEEEEESSCEEEEEEE--EEECCCSCCCC
T ss_pred             EEEEEEEEEcCCcCCCCcCC--ceEeCCCCCCC
Confidence            99999999999999998863  34444433333

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.51  E-value=2.2e-13  Score=110.18  Aligned_cols=104  Identities=17%  Similarity=0.196  Sum_probs=82.6

Q ss_pred             cCcCCCCccccCCEEccCCCC------CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEee
Q psy12426        388 KIGESLPLVCQSPITAKDPFG------RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIV  461 (616)
Q Consensus       388 ~~g~~~~~~~s~~~~~~~~~~------~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~  461 (616)
                      ..|.+.+   +..+.+.+...      +|++|.++++...+ +++.|+|.+|...+ +.|.+|.|+|+.....+ ....+
T Consensus         3 ~~G~g~~---S~~~~~~T~~~~~~~~~~P~~P~~l~~~~~~-~sv~l~W~~P~~~~-g~i~~Y~v~y~~~~~~~-~~~~~   76 (126)
T 1x5i_A            3 SGSSGPA---TDWLSAETFESDLDETRVPEVPSSLHVRPLV-TSIVVSWTPPENQN-IVVRGYAIGYGIGSPHA-QTIKV   76 (126)
T ss_dssp             SCCCCCC---CCCCCSCCCCTTSBCSSCCCSCSEEEEEEET-TEEEEEEECCSCTT-BCCCEEEEEECSSCGGG-EEEEC
T ss_pred             CCccCCC---CCCEEeECccccCccCCCCCCCCeeEEEecC-CEEEEEEcCCCCCC-CCEeEEEEEEEcCCCCc-eEEEe
Confidence            4566666   44556666666      89999999999887 99999999887554 46999999998532233 33345


Q ss_pred             cCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCC
Q psy12426        462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA  497 (616)
Q Consensus       462 ~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~  497 (616)
                      ......++|.+|.|++.|.|+|+|+|..|.|+++..
T Consensus        77 ~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~  112 (126)
T 1x5i_A           77 DYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYE  112 (126)
T ss_dssp             CTTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCC
T ss_pred             CCCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceee
Confidence            677889999999999999999999999999998863

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.50  E-value=3.9e-13  Score=107.05  Aligned_cols=102  Identities=31%  Similarity=0.506  Sum_probs=90.7

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.| ...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++...|.|.|+|.|.|
T Consensus         6 ~pp~i-~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A            6 SGPQI-IQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             CCCEE-SCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             CCCEE-EeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence            45666 45567889999999999999999999999999999998877788887766678999999999999999999999


Q ss_pred             CCCCceeeEEEEEecCCCCCCCC
Q psy12426        294 SWGTDKGTAKVTVLDIPSPPEGP  316 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~~p~~p~~~  316 (616)
                      ..|.....+.|.|...|.+|..+
T Consensus        85 ~~g~~~~~~~l~V~~~p~~P~~p  107 (114)
T 2cqv_A           85 KLGSRQAQVNLTVVDKPDPPAGT  107 (114)
T ss_dssp             SSCEEECCEEEEEECSCSCCCCC
T ss_pred             CCCcEEEEEEEEEECCCCCCCCC
Confidence            99998899999999999888775

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.50  E-value=1e-13  Score=111.88  Aligned_cols=96  Identities=33%  Similarity=0.601  Sum_probs=82.0

Q ss_pred             CCCCCCCCC--EEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEe-EeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        408 GRPDRPGQP--TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA-CIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       408 ~~p~~p~~~--~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~-~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      .+|.+|.++  .+...+.+++.|+|.+| .+++.+|.+|.|+|+..++.|... .........++|.+|.|++.|.|||+
T Consensus        16 ~~P~~P~~~~~~~~~~~~~sv~l~W~~p-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~   94 (121)
T 1wf5_A           16 QLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLC   94 (121)
T ss_dssp             CCCCCCSSCEEEECSSSTTEEEEECCCC-CCCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCEEEEEEE
T ss_pred             eCCccCCCcceeeEeccCCEEEEEEcCC-CCCCCcceEEEEEEEcCCCCceEeEcccCCCccEEEECCcCCCCEEEEEEE
Confidence            578899999  78788899999999987 556678999999999877688776 44566788999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCEEec
Q psy12426        485 AVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~~~~~  504 (616)
                      |.|..|.|++|..+..+++.
T Consensus        95 A~n~~G~s~~S~~~~~~~t~  114 (121)
T 1wf5_A           95 AVNDVGKGQFSKDTERVSLP  114 (121)
T ss_dssp             EEESSCEEEECCCCSCEECC
T ss_pred             EEcCCccCCCcCCcceeEcC
Confidence            99999999999887655544

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}

Probab=99.50  E-value=1.9e-12  Score=115.02  Aligned_cols=179  Identities=12%  Similarity=0.062  Sum_probs=112.2

Q ss_pred             ccceee-cCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-----------CCEEEcc--ccccceEEeccccCCCeEEEE
Q psy12426        317 LKPSNI-TKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-----------GRWVPMG--DVSGTYTRAENLIEGHDYNFR  382 (616)
Q Consensus       317 ~~~~~~-~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-----------~~~~~~~--~~~~~~~~i~~L~~~~~y~~~  382 (616)
                      +.+... ....+..+|.+.... ......|.+.+.....           .....+.  ......+.+..+...+.|.|+
T Consensus         7 lsC~~~~~~~~~~C~W~~g~~~-~l~t~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~~~~~Y~~~   85 (206)
T 3v6o_A            7 ISCETDGYLTKMTCRWSTSTIQ-SLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTMW   85 (206)
T ss_dssp             CEEEECTTSSCEEEEECCCC---------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCCTTSCEEEE
T ss_pred             EEEEECCCCcEEEEEecCCCcC-CcccccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHHhcccEEEE
Confidence            444444 357899999964332 2111267887764321           0001111  123346778888888999999


Q ss_pred             EEEEecCcCCCCccccCCEEc-cCCCCCCCCCCCCEEEEe-cCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEe
Q psy12426        383 VKAVNKIGESLPLVCQSPITA-KDPFGRPDRPGQPTVTDW-GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKA  458 (616)
Q Consensus       383 v~a~n~~g~~~~~~~s~~~~~-~~~~~~p~~p~~~~~~~~-~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~  458 (616)
                      |.|.|..|....    ..+.+ ......|++|.++.+... ..+.+.|+|.+|....  .+..|+|+|+..+.  .|...
T Consensus        86 V~a~N~~G~~~s----~~~~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~~~~--~~l~yev~y~~~~~~~~w~~~  159 (206)
T 3v6o_A           86 IRINHSLGSLDS----PPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPE--NNLQFQIRYGLSGKEVQWKMY  159 (206)
T ss_dssp             EEEC---CCEEC----CCEEECGGGGBCCCCCCSCEEEEETTTTEEEEEC----------CEEEEEEEEESSSSCCCEEE
T ss_pred             EEEEcCCccccC----CcccEeecceEcCCCCCceEeEEecCCCeEEEEECCCCCCC--CcEEEEEEEEECCCCCceEEE
Confidence            999999987542    22222 223357899999998765 6889999999875432  35789999998763  78776


Q ss_pred             EeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEE
Q psy12426        459 CIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       459 ~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~  502 (616)
                      .........+.|.+|.|++.|.|+|+|.+..|.|.+|..+..+.
T Consensus       160 ~~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeWS~~~~  203 (206)
T 3v6o_A          160 EVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAY  203 (206)
T ss_dssp             EECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCCCCCCEE
T ss_pred             ecccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCCCcceE
Confidence            54333345799999999999999999999888888888776544

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.50  E-value=1.8e-13  Score=111.31  Aligned_cols=95  Identities=36%  Similarity=0.525  Sum_probs=78.0

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCC---CCceEeEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY---GPWEKACIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~---~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      .+|++|.++.+..++.+++.|+|.+| .+++.+|.+|.|+|+...   +.|.......+.... .+.+|.|++.|.|||+
T Consensus        15 ~~P~~P~~~~~~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~~~-~i~~L~p~t~Y~frV~   92 (127)
T 1uey_A           15 DVPNPPFDLELTDQLDKSVQLSWTPG-DDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT-AQLNLSPYVNYSFRVM   92 (127)
T ss_dssp             CSCCCCEEEEEECCSSSCEEEEEECC-CCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCE-EEECCCTTCEECCEEE
T ss_pred             cCCcCCCCcEEEEccCCEEEEEEECC-CCCCCCceEEEEEEEECCCCCCccEEEeeeCCCceE-EEecCCCCCEEEEEEE
Confidence            68899999999999999999999965 556778999999998764   268776655555555 4779999999999999


Q ss_pred             EEcCCCCCCCCCCCCCEEec
Q psy12426        485 AVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~~~~~  504 (616)
                      |.|..|.|++|..+..+++.
T Consensus        93 A~n~~G~s~~S~~~~~~~T~  112 (127)
T 1uey_A           93 AVNSIGKSLPSEASEQYLTK  112 (127)
T ss_dssp             EEESSCBCCCCSCCCCEECC
T ss_pred             EEeCCccCCccccccceEcC
Confidence            99999999999886555543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.50  E-value=3.4e-14  Score=134.98  Aligned_cols=208  Identities=11%  Similarity=0.010  Sum_probs=131.7

Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecC--ce
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI--PT  247 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~--~~  247 (616)
                      ....|.|.+++..|.|.|+|.|.|..|....   ...+.+.   .+|......+....+.+|+.+.|.|.+.+ |.  +.
T Consensus        49 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~---~~~l~V~---~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~  121 (292)
T 4dkd_C           49 SSSILSTNNATFQNTGTYRCTEPGDPLGGSA---AIHLYVK---DPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAG  121 (292)
T ss_dssp             TEEEEEESSCCGGGCSCEEECCCC----CCE---EECCEEC---CSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSS
T ss_pred             ceEEEEEcccccccCEEEEEEEccCCCCcce---EEEEEEc---CccccccccCCeEEEcCCCcEEEeeeCCC-CCccee
Confidence            3458999999999999999999988765421   1122222   23332233456788999999999999998 44  68


Q ss_pred             eEEEEC-CeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEEecCCC-CCC---CCcccee
Q psy12426        248 KEWLCN-DITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPS-PPE---GPLKPSN  321 (616)
Q Consensus       248 ~~W~~~-~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v~~~p~-~p~---~~~~~~~  321 (616)
                      +.|+++ +..+....++.....+   .|.|.++...|.|.|+|.+.|..|.. ...+.+.+...+. +|.   .+.....
T Consensus       122 v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~  198 (292)
T 4dkd_C          122 VSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVR  198 (292)
T ss_dssp             EEEEEGGGCCCCSSCCEECCSSS---CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCC
T ss_pred             EEEEecCCCccccCCcccccCCc---eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeE
Confidence            999997 4445444454443333   49999999999999999999887755 4477777775322 221   1111122


Q ss_pred             ecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC----EEE--ccc-cccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        322 ITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR----WVP--MGD-VSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       322 ~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~----~~~--~~~-~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      ..+..+.|.|......   +  .+.+.|...+...    -..  ... .....+.|.++...+.+.|+|.|.|..|..
T Consensus       199 ~~g~~v~l~C~~~~~~---~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  271 (292)
T 4dkd_C          199 IRGEAAQIVCSASSVD---V--NFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKH  271 (292)
T ss_dssp             CSSSCEEEEEEEEESS---S--CCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEE
T ss_pred             ecCCCEEEEEEecCCC---C--ceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCc
Confidence            3577888888753211   1  1223332221110    000  000 123478899999999999999999999874

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.50  E-value=2.3e-12  Score=132.17  Aligned_cols=118  Identities=12%  Similarity=0.022  Sum_probs=75.7

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc-c--cCCCceeccCCcceEEEcCCeEE-EEEEEeeecC--c
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA-K--KVSPYINRDQLSDIKVRAGSNFE-FDINVIGEPI--P  246 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~-~--~~~P~~~~~~~~~~~v~~g~~~~-l~c~~~~~p~--~  246 (616)
                      .|.|......|.|.|+|.|.|..+... .   ..+.... .  ..+|.+....+..    .|+.+. |.|.+.|.++  .
T Consensus       362 ~L~i~~~~~~d~g~y~C~a~n~~~~~~-~---~~~~~~~~~~~~~~p~v~~~~~~~----~~~~~~~L~C~~~g~~P~~i  433 (512)
T 1zvo_C          362 RLTLPRSLWNAGTSVTCTLNHPSLPPQ-R---LMALREPAAQAPVKLSLNLLASSD----PPEAASWLLCEVSGFSPPNI  433 (512)
T ss_pred             EEEEchHHhcCCCeEEEEEEeCCCCCC-c---eeEEeecCCCCCCCCEEEEEccCc----CCCCceEEEEEEeeeCCCCc
Confidence            588888888999999999999876532 1   1122111 1  2456553332222    688899 9999998644  3


Q ss_pred             eeEEEECCeeecccCcE--EEE-ecCCc-----eEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        247 TKEWLCNDITIISKDRF--KIV-NDDKS-----TKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       247 ~~~W~~~~~~~~~~~~~--~~~-~~~~~-----~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      .+.|+++|..+......  ... ..+..     +.|.|......+.|.|+|.|.|.....
T Consensus       434 ~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~  493 (512)
T 1zvo_C          434 LLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRT  493 (512)
T ss_pred             EEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCC
Confidence            68999999987654211  111 11211     346666666667999999999975543

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.50  E-value=2.5e-13  Score=123.10  Aligned_cols=129  Identities=15%  Similarity=0.058  Sum_probs=84.1

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCC---CCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeee-cC
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPG---EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PI  245 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~---~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~  245 (616)
                      ...|.|.+++++|.|.|.|.+.|..|..   .... ...+.+.. ...+|.+....+.. .+..|+.+.|.|.+.+. |.
T Consensus        80 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~-~~~l~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~  157 (222)
T 1q9r_B           80 ILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQ-GTLVTVSAAKTTPPSVYPLAPGS-AAQTNSMVTLGCLVKGYFPE  157 (222)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCC-CEEEEECSSCCBCCEEEEECCCS-CCCCSSEEEEEEEEEEEBSS
T ss_pred             eEEEEECcCCcccCeEEEEEEeccCCcccceEeCC-ceEEEeccCCCCCCeEEEccccc-cccCCCcEEEEEEEccEECC
Confidence            3479999999999999999999876421   1111 11233332 22455554322222 24579999999999986 88


Q ss_pred             c-eeEEEECCeeecccCcEEEEecC---CceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        246 P-TKEWLCNDITIISKDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       246 ~-~~~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      + .+.|++++..+...........+   ..+.|.|.++...| |.|+|.|.|..|......
T Consensus       158 p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~  217 (222)
T 1q9r_B          158 PVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  217 (222)
T ss_dssp             CCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence            8 99999998765321111111111   12368899999889 999999999887654433

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.49  E-value=1.7e-13  Score=123.55  Aligned_cols=126  Identities=9%  Similarity=0.014  Sum_probs=82.7

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCc-eeE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-TKE  249 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~-~~~  249 (616)
                      ..|.|.+++.+|.|.|+|.|.|..+...... ...+.+.....+|.+....+... ...|+.+.|.|.+.+. |.+ .+.
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~-~~~l~V~~~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~  149 (216)
T 2xzc_L           72 ATLGITGLQTGDEADYYCGTWDSSLNPVFGG-GTKLEIKRTVAAPSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAKVQ  149 (216)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSCEEEBC-CEEEEECCCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEeCCCcceECC-CEEEEEcCCCCCCceEEeCCChh-hccCCcEEEEEEEEeEcCCceEEE
Confidence            3799999999999999999999876111111 11234433335666643222222 2358899999999984 554 899


Q ss_pred             EEECCeeecccCcEE--EEecC-C----ceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        250 WLCNDITIISKDRFK--IVNDD-K----STKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       250 W~~~~~~~~~~~~~~--~~~~~-~----~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      |++++..+..+....  ..... +    .+.|.|..+...|.|.|+|.|.|......
T Consensus       150 W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          150 WKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  206 (216)
T ss_dssp             EEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             EEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCc
Confidence            999998875441111  11111 1    13788999999999999999999765433

>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A

Probab=99.49  E-value=7.9e-14  Score=126.50  Aligned_cols=179  Identities=19%  Similarity=0.238  Sum_probs=114.4

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCc-eEEEEEEEEeCCC----CCEEEccc-----cccceEEeccccCCC
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD-ILHYVVEKMDMET----GRWVPMGD-----VSGTYTRAENLIEGH  377 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~-i~~y~v~~~~~~~----~~~~~~~~-----~~~~~~~i~~L~~~~  377 (616)
                      .+|..|.+ +.+.......+.+.|++ ...++.. ...|.+.|+....    ..|..+..     .....+...+|..++
T Consensus        28 ~pP~~P~~-l~C~~~~~~~~~c~W~p-~~~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~~~  105 (236)
T 1axi_B           28 NSSGEPKF-TKCRSPERETFSCHWTD-EVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAI  105 (236)
T ss_dssp             ----CCCE-EEEEBSSSSCEEEEECC-C--------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCSSS
T ss_pred             CCCCCCcC-CeEEeCCCCEEEEEecC-CCCCCCCCCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCcccc
Confidence            35666665 55555677899999995 3333323 2467777754332    23666543     123456667889999


Q ss_pred             eEEEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEE--EEecC----CeEEEEecCCCCC---CCCcceeEEEEE
Q psy12426        378 DYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTV--TDWGK----DHVDLEWTPPKKD---GGSPISQYIIEK  448 (616)
Q Consensus       378 ~y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~--~~~~~----~~v~l~W~~p~~~---~~~~i~~Y~i~~  448 (616)
                      .|.|+|.| | .+.+..    ..+.+ .....|++|.++.+  ...+.    ..+.|+|.+|...   ++..+..|+|+|
T Consensus       106 ~Y~~~V~a-N-~~~s~~----~~~~~-~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry  178 (236)
T 1axi_B          106 PYCIKLTS-N-GGTVDE----KCFSV-DEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQY  178 (236)
T ss_dssp             EEEEEEEE-T-TEEEEE----EEEEG-GGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEE
T ss_pred             eEEEEEEE-C-CccCCC----eEeec-ccccccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEE
Confidence            99999999 8 332221    12222 22357888988853  33333    3499999988642   332578999999


Q ss_pred             eeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCC--CCCCCCC
Q psy12426        449 KPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG--PGEPSKA  497 (616)
Q Consensus       449 ~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G--~g~~s~~  497 (616)
                      +..++ .|.....  .....++|.+|.|++.|.|+|||.+..|  .|++|..
T Consensus       179 ~~~~~~~w~~~~~--~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~  228 (236)
T 1axi_B          179 KEVNETKWKMMDP--ILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEV  228 (236)
T ss_dssp             EETTCSSCEECCC--BSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCC
T ss_pred             EECCCCceEEEec--cCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCC
Confidence            98876 7775432  2357999999999999999999999888  6666654

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.3e-13  Score=108.68  Aligned_cols=95  Identities=18%  Similarity=0.221  Sum_probs=77.1

Q ss_pred             CCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCC-C---CceEeEeecCCccEEEcCCCCCCCeEE
Q psy12426        405 DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-G---PWEKACIVPANITATSVPDLKEGEEYE  480 (616)
Q Consensus       405 ~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~-~---~~~~~~~~~~~~~~~~l~~L~p~t~Y~  480 (616)
                      +...+|++|.++++..++.+++.|+|.+|...+ +.|.+|.|+|+..+ .   .|...   ......++|.+|.|++.|.
T Consensus         3 T~~~~P~~p~~l~~~~~~~~sv~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~L~p~t~Y~   78 (109)
T 2e7h_A            3 SGSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPS-GAVLDYEVKYHEKGAEGPSSVRFL---KTSENRAELRGLKRGASYL   78 (109)
T ss_dssp             SSCCSSCCCCCCEEEEEETTEEEEECCCCCCSS-SCCCEEEEEEEETTCCSTTTSEEE---EESSSEEEEESCCTTSCEE
T ss_pred             CCCCCCCCCCccEEEecCCCEEEEEeCCCCCCC-CcEeEEEEEEEECCCCCCceeEEE---ccCCCEEEECCCCCCCeEE
Confidence            345788899999999999999999999886444 46999999998876 2   23322   2345699999999999999


Q ss_pred             EEEEEEcCCCCCCCCCCCCCEEe
Q psy12426        481 FRVIAVNKGGPGEPSKASAPVTC  503 (616)
Q Consensus       481 ~~v~a~n~~G~g~~s~~~~~~~~  503 (616)
                      |+|+|.|..|.|++|....+.|.
T Consensus        79 ~~V~A~n~~G~g~~S~~~~~~T~  101 (109)
T 2e7h_A           79 VQVRARSEAGYGPFGQEHHSQTQ  101 (109)
T ss_dssp             EEEEEECSSCBCCCCSCEECCCC
T ss_pred             EEEEEEeCCccCCCCCCEEEEcC
Confidence            99999999999999986655443

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens}

Probab=99.49  E-value=6.3e-14  Score=112.76  Aligned_cols=106  Identities=25%  Similarity=0.343  Sum_probs=78.1

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeE---eecCCccEEEcCCCCCCCeEEEE
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKAC---IVPANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~---~~~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      ...|++|.++.+...+.+ +.|+|.+|..+++.+|.+|.|+|+..+. .|....   ........++|.+|.|++.|.|+
T Consensus         5 ~~~P~~P~~~~~~~~~~t-v~l~W~~P~~~~G~pI~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   83 (122)
T 2e3v_A            5 SSGPSSPSIDQVEPYSST-AQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVR   83 (122)
T ss_dssp             -CCCCCCEEEEEEECSSC-EEEEEECCCCC--CCEEEEEEEEEETTCCSCEEEEEEHHHHHTTTEEEECSCCTTCEEEEE
T ss_pred             CcCCcCCCccEEEecCCc-EEEEECCCCcCCCCcceEEEEEEEECCCCCcccceeeeeecCccceEEeCCCCCCCEEEEE
Confidence            367888888888888877 9999999877777779999999998876 774321   22345789999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCEEec-cCcCCCeec
Q psy12426        483 VIAVNKGGPGEPSKASAPVTCK-PRFVAPVID  513 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~~~~~~-~~~~~p~~~  513 (616)
                      |+|+|..|.|++|....+.+.. ..+.+|.+.
T Consensus        84 V~A~n~~G~g~~S~~~~~~t~~~~~P~~P~~~  115 (122)
T 2e3v_A           84 LAALNGKGLGEISAASEFKTQPVREPSAPKLE  115 (122)
T ss_dssp             EEEEETTEECCCCCCEEEECCCCCCCC-----
T ss_pred             EEEEeCCccCCCcccccccccCCCCCCCCeec
Confidence            9999999999999876653322 134555543

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.49  E-value=2.8e-13  Score=104.42  Aligned_cols=94  Identities=33%  Similarity=0.618  Sum_probs=81.6

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc--CcEEEEecCCceEEEecCCCCCCcEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK--DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      .||.| ...+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+...  .++.+...+....|.|.+++..|+|.|+|.|
T Consensus         4 ~PP~i-~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            4 IPPKI-EALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             EEEEE-CCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEE-EeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence            35666 45567889999999999999999999999999999998654  4677777777889999999999999999999


Q ss_pred             EcCCCCceeeEEEEEec
Q psy12426        292 KNSWGTDKGTAKVTVLD  308 (616)
Q Consensus       292 ~n~~g~~~~~~~l~v~~  308 (616)
                      .|..|....++.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           83 GNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999988888888764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.49  E-value=2.4e-13  Score=125.44  Aligned_cols=119  Identities=11%  Similarity=0.037  Sum_probs=74.7

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecccc----------CCCceeccCCcceEEEcCCeEEEEEEEee
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK----------VSPYINRDQLSDIKVRAGSNFEFDINVIG  242 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~----------~~P~~~~~~~~~~~v~~g~~~~l~c~~~~  242 (616)
                      .|.|.+++++|.|.|.|.|.|..+......  ..+.+....          .++.. ...+....+.+|++++|.|.+.+
T Consensus        77 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~--~~l~V~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~G~~v~L~C~~~~  153 (247)
T 1svz_A           77 TLKISRVEAEDLGIYYCFQGSHFPPTFGGG--TKLEIKGGGGSGGGGSGGGGSEVQ-LQQSGPELKKPGETVKISCKATN  153 (247)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCC--EEEEEC---------------CCE-EEECCCEEECTTCCEEEEEEEES
T ss_pred             EEEECCCCHHHCEEEEEEEccCCccEECCC--EEEEEECCccccccccccccCceE-EeCCCceeecCCCcEEEEEEEcC
Confidence            677777777888888887776543211010  112222211          01222 22223346899999999999998


Q ss_pred             ec--CceeEEEECC--eeec-----------------ccCcEEEEe--cCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        243 EP--IPTKEWLCND--ITII-----------------SKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       243 ~p--~~~~~W~~~~--~~~~-----------------~~~~~~~~~--~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      .+  .+.+.|++++  ..+.                 ...++.+..  ......|.|.+++..|+|.|.|.|.|.
T Consensus       154 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          154 YAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             SCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             cccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            75  5689999963  2110                 134555543  344569999999999999999999984

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.5e-13  Score=109.18  Aligned_cols=99  Identities=23%  Similarity=0.289  Sum_probs=82.4

Q ss_pred             ccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEE
Q psy12426        403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEF  481 (616)
Q Consensus       403 ~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  481 (616)
                      +.+...+|++|.++++..++.+++.|+|.+|.. .++.|.+|.|+|+..+. .|............++|.+|.|++.|.|
T Consensus        11 ~~~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   89 (119)
T 2ed7_A           11 IPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAE-AKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTF   89 (119)
T ss_dssp             CCCSSSSCCCCSCCEEEEECSSCEEEECCCCSC-CSSCEEEEEEEEEESSCCCCEEEECCCTTCCEEEECSCCSSSEEEE
T ss_pred             CCCCCCCCcCCcceEEEecCCCEEEEEEeCCCC-CCCcEEEEEEEEEeCCCCcceeeEeecCCceEEEeCCCCCCCEEEE
Confidence            334567899999999999999999999998765 44579999999998776 5555555556688999999999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCEE
Q psy12426        482 RVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       482 ~v~a~n~~G~g~~s~~~~~~~  502 (616)
                      +|+|+|..|.|++|......|
T Consensus        90 ~V~A~n~~G~g~~S~~~~~~T  110 (119)
T 2ed7_A           90 RVVAYNEWGPGESSQPIKVAT  110 (119)
T ss_dssp             CCEEEESSCBCSCCCCEEEEC
T ss_pred             EEEEEcCCccCCCcCCEEEEe
Confidence            999999999999887665544

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.49  E-value=9.3e-14  Score=109.84  Aligned_cols=94  Identities=29%  Similarity=0.455  Sum_probs=73.1

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCC-C-CceEeEeec-----------CCccEEEcCCCC
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-G-PWEKACIVP-----------ANITATSVPDLK  474 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~-~-~~~~~~~~~-----------~~~~~~~l~~L~  474 (616)
                      .+|++|.   +..++.+++.|+|.+|..++ .+|++|.|+|+..+ + .|.......           +....+++.+|.
T Consensus         4 ~pP~~P~---v~~~~~~sv~L~W~~P~~~G-~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~   79 (115)
T 2ic2_A            4 YPPTPPN---VTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLK   79 (115)
T ss_dssp             CCCCCCE---EEECC---EEEEEEEECCSS-CCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCC
T ss_pred             CCCCcCE---eEEEeCCEEEEEEcCCCCCC-CCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCCCC
Confidence            4566664   77789999999999876655 78999999999873 3 787664321           335689999999


Q ss_pred             CCCeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426        475 EGEEYEFRVIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       475 p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      |++.|.|||+|+|..|.|.+|..+..+.+.+
T Consensus        80 p~t~Y~FRV~A~N~~G~~~pS~~S~~~~~~~  110 (115)
T 2ic2_A           80 PQHTYRFRILAVYSNNDNKESNTSAKFYLQP  110 (115)
T ss_dssp             SSEEEEEEEEEEETTSCEEECCCCCCEEECC
T ss_pred             CCCEEEEEEEEEeCCCCCCCCCCCCCEEeCC
Confidence            9999999999999999999999888777654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.49  E-value=3.8e-14  Score=135.76  Aligned_cols=215  Identities=10%  Similarity=-0.030  Sum_probs=126.8

Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE-eeecCcee
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTK  248 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~-~~~p~~~~  248 (616)
                      ....|.|.+++.+|.|.|+|.|.|..+......    +.+.....++......+.......|+.+.|.|.+ .+.|.+.+
T Consensus        72 ~~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i  147 (308)
T 4fom_A           72 NDATITLHNIGFSDSGKYICKAVTFPLGNAQSS----TTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHI  147 (308)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEETTTEEEEEE----EEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEE
T ss_pred             CceEEEEccCCHHHCEEEEEEEeeCCCcceeee----eEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceE
Confidence            446799999999999999999998643221111    1111111122111333444555678899999975 58899999


Q ss_pred             EEEECCeeecccCcEEEE-ecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee--EEEEEecCCCCCCCCcc-ceeecC
Q psy12426        249 EWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT--AKVTVLDIPSPPEGPLK-PSNITK  324 (616)
Q Consensus       249 ~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~--~~l~v~~~p~~p~~~~~-~~~~~~  324 (616)
                      .|++++..+......... .......|.|.++...|.|.|+|.|.|..|.....  ..|.+..+|.....+.. .....+
T Consensus       148 ~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g  227 (308)
T 4fom_A          148 DWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGR  227 (308)
T ss_dssp             EECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTC
T ss_pred             EEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeecc
Confidence            999998876432111000 00112379999999999999999999987765444  34444444432221111 223345


Q ss_pred             CeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        325 SSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       325 ~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ..+.|.|......   ...  .+.|...+...-..........+.|.++...+.+.|+|.|.|..|...
T Consensus       228 ~~v~l~C~~~g~P---~p~--~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~  291 (308)
T 4fom_A          228 KGVNLKCNADANP---PPF--KSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRS  291 (308)
T ss_dssp             CSCEEECCEEEES---CEE--EEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEE
T ss_pred             ccEEEEEEEecCC---CCc--EEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEE
Confidence            6788888742211   111  233322211100001112334456778888899999999999999753

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.49  E-value=3.7e-13  Score=107.61  Aligned_cols=104  Identities=22%  Similarity=0.279  Sum_probs=82.7

Q ss_pred             cCCEEccCC--CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCC
Q psy12426        398 QSPITAKDP--FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLK  474 (616)
Q Consensus       398 s~~~~~~~~--~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~  474 (616)
                      +..+.+.+.  ..+|++|.++++..++.+++.|+|.+|...++ .|.+|.|+|+..+. .|...   ......++|.+|.
T Consensus         4 S~~~~~~T~~~~~~P~~P~~l~~~~~~~~si~l~W~~p~~~~~-~i~~Y~v~~~~~~~~~~~~~---~~~~~~~~i~~L~   79 (116)
T 1x5g_A            4 GSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQDV---DVSSHSYTINGLK   79 (116)
T ss_dssp             CCCCCCSSCCCSSCCCCCSSCEEEEEETTEEEEECCCCSCCSS-CCSEEEEEEEETTCCCCCCE---EECSSEEEECSCC
T ss_pred             ccCeEEEcCCCCCCCcCCCccEEEecCCCEEEEEEeCCCCCCC-cccEEEEEEEECCCCccEEE---ecCCceEEEcCCC
Confidence            344455552  36888999999999999999999998765444 69999999998775 55322   2347899999999


Q ss_pred             CCCeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426        475 EGEEYEFRVIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       475 p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      |++.|.|+|+|+|..|.|++|....+.|...
T Consensus        80 p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~  110 (116)
T 1x5g_A           80 KYTEYSFRVVAYNKHGPGVSTPDVAVRTLSD  110 (116)
T ss_dssp             TTCEEEEEEEEECSSCCCCBCCCCCEECCCS
T ss_pred             CCCEEEEEEEEEcCCCcCCCCCCEEEECCCC
Confidence            9999999999999999999998776655543

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.49  E-value=2.3e-13  Score=125.53  Aligned_cols=128  Identities=13%  Similarity=0.032  Sum_probs=82.5

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCC-CCCCCCCEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEeeecCc
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGE-PSDPTAPHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP  246 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~-~s~~~~~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~  246 (616)
                      ...|.|.+++++|.|.|.|.|.+..+... .......+.+..   ...+|.+....+....+..|+.+.|.|.+.+.+++
T Consensus        76 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~  155 (246)
T 4dzb_B           76 LSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD  155 (246)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS
T ss_pred             EEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCC
Confidence            34799999999999999999987644111 000111233332   22456554444444445569999999999997765


Q ss_pred             --eeEEEECCeeecccCcEEEEe-------cCCc----eEEEecCCCCCC-cEEEEEEEEcCCCCc
Q psy12426        247 --TKEWLCNDITIISKDRFKIVN-------DDKS----TKLKVFDSKRGD-SGIYTLAVKNSWGTD  298 (616)
Q Consensus       247 --~~~W~~~~~~~~~~~~~~~~~-------~~~~----~~l~i~~l~~~~-~g~y~c~a~n~~g~~  298 (616)
                        .+.|++++..+....+.....       .++.    ..|.|......| .|.|+|.|.|.....
T Consensus       156 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~  221 (246)
T 4dzb_B          156 HVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  221 (246)
T ss_dssp             CEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             ceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCC
Confidence              899999998876432211100       0111    247788777777 999999999965443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.49  E-value=1.9e-12  Score=125.02  Aligned_cols=215  Identities=11%  Similarity=0.054  Sum_probs=118.7

Q ss_pred             CCCCeEEeecccCCCeEEEEEEEEeCCCCCCC--CCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCc
Q psy12426        169 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP--SDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP  246 (616)
Q Consensus       169 ~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~--s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~  246 (616)
                      .....|.|.+++.+|.|.|+|.|.|..+....  ......+.+...+.+|.+.  .+ ...+..|+.+.|.|.+.+.|.+
T Consensus        71 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~--~~-~~~~~~g~~~~l~C~~~g~p~~  147 (327)
T 2wng_A           71 NMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS--GP-AARATPQHTVSFTCESHGFSPR  147 (327)
T ss_dssp             CCBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE--CC-SSCBCTTCEEEEEEEEEEEBSS
T ss_pred             CceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee--cc-ccccCCCCEEEEEEEEeCccCC
Confidence            44568999999999999999999997653110  0011234444444555543  12 3557889999999999999876


Q ss_pred             --eeEEEECCeeecccCcEEEEec-CC----ceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEEe-cCCCCCCCCc
Q psy12426        247 --TKEWLCNDITIISKDRFKIVND-DK----STKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVL-DIPSPPEGPL  317 (616)
Q Consensus       247 --~~~W~~~~~~~~~~~~~~~~~~-~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v~-~~p~~p~~~~  317 (616)
                        .+.|++++..+........... +.    ...|.|.....++.|.|+|.|.|..+.. .......+. ....+|.  +
T Consensus       148 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~--i  225 (327)
T 2wng_A          148 DITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPT--L  225 (327)
T ss_dssp             CCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCE--E
T ss_pred             CcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCE--E
Confidence              8999999988764432211111 11    1257777777667899999999987763 222222221 1112222  1


Q ss_pred             cce---eecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCC-------CEEEcccc---ccceEEeccccCCCeEEEEEE
Q psy12426        318 KPS---NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG-------RWVPMGDV---SGTYTRAENLIEGHDYNFRVK  384 (616)
Q Consensus       318 ~~~---~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~-------~~~~~~~~---~~~~~~i~~L~~~~~y~~~v~  384 (616)
                      .+.   ...+..+.|.|...... . +..  .+.|...+..       ........   ....+.|......+.+.|.|.
T Consensus       226 ~~~~~~~~~G~~v~l~C~~~g~~-p-~~~--~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~  301 (327)
T 2wng_A          226 EVTQQPVRAENQVNVTCQVRKFY-P-QRL--QLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQ  301 (327)
T ss_dssp             EEEEECCSSTTCCEEEEEEEEEB-S-SCE--EEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEE
T ss_pred             EEecCCcCCCCcEEEEEEEcccc-C-CCc--EEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEE
Confidence            111   12456677888753211 0 111  1222221110       01111111   013466777777788999999


Q ss_pred             EEecCcCC
Q psy12426        385 AVNKIGES  392 (616)
Q Consensus       385 a~n~~g~~  392 (616)
                      |.|..|..
T Consensus       302 a~N~~~~~  309 (327)
T 2wng_A          302 VEHDGQPA  309 (327)
T ss_dssp             EEETTCCC
T ss_pred             EEeCCCCC
Confidence            99988764

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.49  E-value=3.2e-14  Score=116.88  Aligned_cols=107  Identities=19%  Similarity=0.330  Sum_probs=85.8

Q ss_pred             cCCEEccCCCCCCC-CCCCCEEEEecCCeEEEEecCCCCC-CCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCC
Q psy12426        398 QSPITAKDPFGRPD-RPGQPTVTDWGKDHVDLEWTPPKKD-GGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLK  474 (616)
Q Consensus       398 s~~~~~~~~~~~p~-~p~~~~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~  474 (616)
                      +..+.+.+....|. +|.++++...+.+++.|+|.+|..+ .++.|.+|.|+|+..+. .|............++|.+|.
T Consensus         6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~   85 (132)
T 1x5h_A            6 SGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLD   85 (132)
T ss_dssp             CCCCCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCC
T ss_pred             CCCEEEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCccEEEEeCCCccEEEeCCCC
Confidence            45566667777777 6779999989999999999988652 45579999999998765 343333456778899999999


Q ss_pred             CCCeEEEEEEEEcCCCCCCCCCCCCCEEec
Q psy12426        475 EGEEYEFRVIAVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       475 p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~  504 (616)
                      |++.|.|+|+|.|..|.|++|....+.|..
T Consensus        86 p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~  115 (132)
T 1x5h_A           86 RGTEYNFRVAALTINGTGPATDWLSAETFE  115 (132)
T ss_dssp             SSCEEEEECEEEETTEEEEECCCEEEECCS
T ss_pred             CCCEEEEEEEEEcCCccCCCCcCEEeEcCc
Confidence            999999999999999999998876655544

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=8e-13  Score=105.92  Aligned_cols=114  Identities=21%  Similarity=0.301  Sum_probs=92.7

Q ss_pred             CCCCCCCCCCCEEeccccCCCceecc--CCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceE
Q psy12426        196 GPGEPSDPTAPHIARAKKVSPYINRD--QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK  273 (616)
Q Consensus       196 g~~~~s~~~~~~~~~~~~~~P~~~~~--~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  273 (616)
                      |.+..+.....+.+.....+|.|...  .+..+.+..|+.+.|.|.+.|.|.+.+.|++++..+. ..++.+...+....
T Consensus         2 G~s~p~~~~~~v~~~~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~   80 (118)
T 2e7c_A            2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTV   80 (118)
T ss_dssp             CCCCCCCCCCCCCCCCCSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEE
T ss_pred             CcCCccccCCCEEEEeeccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEE
Confidence            44555555555555555667777432  4577899999999999999999999999999999886 45666666666678


Q ss_pred             EEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy12426        274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIP  310 (616)
Q Consensus       274 l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p  310 (616)
                      |.|.++...|.|.|+|.|.|..|.....+.+.|..+|
T Consensus        81 L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           81 FFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred             EEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence            9999999999999999999999988888999988776

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.48  E-value=7.1e-14  Score=135.92  Aligned_cols=244  Identities=9%  Similarity=-0.047  Sum_probs=144.0

Q ss_pred             cCcccccEEEEeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccC
Q psy12426        135 GTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKV  214 (616)
Q Consensus       135 g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~  214 (616)
                      +.|.+.+.|++  ++..+.  .......+   .......|.|.+++..|.|.|+|.|.|..|....+   ..+.+..  .
T Consensus        51 ~~p~~~v~W~k--~~~~~~--~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~~~~---~~l~V~~--~  118 (339)
T 3o4o_C           51 VSPRINLTWHK--NDSART--VPGEEETR---MWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMS---IELRVFE--N  118 (339)
T ss_dssp             TSSCCBCCCEE--SSCCSC--CSCCSSSC---EEEETTEEEESSBCTTCCEEEECCEEETTEEEEEE---EEEEEEC--S
T ss_pred             CCCCceEEEEE--CCCCcc--cCcccccc---EEeeCCeEEECCCCcccCEEEEEEEECCcceEEEE---EEEEEEc--C
Confidence            44566799998  533211  11110001   11123489999999999999999999987743211   1122221  1


Q ss_pred             CCceeccCCcceEEEcCCeEEEEEE-----EeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDIN-----VIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~-----~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      ++...........+..|+.+.|.|.     +.+.|.+.+.|++++..+... .++.+..  ....|.|.++...|.|.|+
T Consensus       119 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~  196 (339)
T 3o4o_C          119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR--GTTHLLVHDVALEDAGYYR  196 (339)
T ss_dssp             CGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECT--TSSEEEESSCCGGGCEEEE
T ss_pred             CCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcC--CcceEEEcccCHhhCeEEE
Confidence            1111011123357889999999999     788999999999999887654 3444332  2248999999999999999


Q ss_pred             EEEEcCCCC----ceeeEEEEEecCCC--CCC---CCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCC----
Q psy12426        289 LAVKNSWGT----DKGTAKVTVLDIPS--PPE---GPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG----  355 (616)
Q Consensus       289 c~a~n~~g~----~~~~~~l~v~~~p~--~p~---~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~----  355 (616)
                      |.|.|..|.    ....+.+.+...+.  +|.   .+-......+..+.|.|......+......  +.|...+..    
T Consensus       197 C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~--v~W~~~g~~~~~~  274 (339)
T 3o4o_C          197 CVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTM--LWWTANDTHIESA  274 (339)
T ss_dssp             EEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCE--EEEESSSSCSSSS
T ss_pred             EEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCce--EEEEECCeecccc
Confidence            999998774    35566677765431  111   111122334566777776511111110121  222211110    


Q ss_pred             ----CEEE-----ccccc----cceEEeccccCCCe-EEEEEEEEecCcCCCC
Q psy12426        356 ----RWVP-----MGDVS----GTYTRAENLIEGHD-YNFRVKAVNKIGESLP  394 (616)
Q Consensus       356 ----~~~~-----~~~~~----~~~~~i~~L~~~~~-y~~~v~a~n~~g~~~~  394 (616)
                          ....     .....    ...+.|.++...+. +.|+|.|.|..|....
T Consensus       275 ~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~  327 (339)
T 3o4o_C          275 YPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTL  327 (339)
T ss_dssp             SCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECC
T ss_pred             cccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEE
Confidence                0111     11111    12688899999886 9999999999997543

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.48  E-value=9.7e-14  Score=109.32  Aligned_cols=96  Identities=19%  Similarity=0.223  Sum_probs=78.3

Q ss_pred             CCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEE
Q psy12426        405 DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       405 ~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      +....|++|.++++..++.+++.|+|.+|...++ .|.+|.|+|+..+. .|... ........++|.+|.|++.|.|+|
T Consensus         3 T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~l~~L~p~t~Y~~~V   80 (108)
T 2djs_A            3 SGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSS-MARSQTNTARIDGLRPGMVYVVQV   80 (108)
T ss_dssp             SCCCCCCCCSCCEEEEECSSEEEEECCCCSCCSS-CEEEEEEEEEETTSCSTTCE-EEEESSSEEEEESCCTTCEEEEEE
T ss_pred             cCCCCCCCCcceEEEecCCCEEEEEECCCCCCCC-eEEEEEEEEEECCCCCccee-EEecCccEEEEcCCCCCCEEEEEE
Confidence            4457889999999999999999999998865444 59999999988765 33222 233567899999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCEE
Q psy12426        484 IAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~~~~  502 (616)
                      +|+|..|.|++|....+.|
T Consensus        81 ~A~n~~G~g~~S~~~~~~T   99 (108)
T 2djs_A           81 RARTVAGYGKFSGKMCFQT   99 (108)
T ss_dssp             EEEESSCEEEECCCEEEEC
T ss_pred             EEEeCCEECCCCCCEEEEe
Confidence            9999999999988665444

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.48  E-value=6.3e-14  Score=109.32  Aligned_cols=87  Identities=25%  Similarity=0.310  Sum_probs=73.1

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .+|++|..+.+. .+.+++.|.|.+ ..+++.+|.+|.|+|+..+. .|.....+++....++|.+|.|++.|+|||.|.
T Consensus         7 ~~P~pP~~~~~~-~~~~sv~L~W~p-~~dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~L~p~t~Y~frV~A~   84 (114)
T 2kbg_A            7 REPSPPSIHGQP-SSGKSFKLSITK-QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAA   84 (114)
T ss_dssp             CCCCSCCEECCB-CSTTCEEEEECC-CCCSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECCCCTTCCEEEEEEEE
T ss_pred             CCccCCcccccc-cCCCEEEEEEEC-CCCCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcCCCCCCEEEEEEEEE
Confidence            567777555433 688999999995 56788999999999999865 676666667778899999999999999999999


Q ss_pred             cCCCCCCCCC
Q psy12426        487 NKGGPGEPSK  496 (616)
Q Consensus       487 n~~G~g~~s~  496 (616)
                      |..|.|++|.
T Consensus        85 N~~G~s~pS~   94 (114)
T 2kbg_A           85 NRLGYSEPTV   94 (114)
T ss_dssp             CTTSCEEEEE
T ss_pred             eCCcCcCCcC
Confidence            9999999775

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.48  E-value=1.3e-13  Score=108.91  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=74.8

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCC---CCc-ceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDG---GSP-ISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~---~~~-i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      .+|++|..+.+..++.++++|.|.+|..++   +.. |.+|.|+...... .|.....  +..+.+++.+|.|++.|.||
T Consensus        14 ~pp~~P~~p~v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~~~~~v~~--~~~t~~~v~gL~p~t~Y~fr   91 (120)
T 1wfu_A           14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT--GYATRHVVEGLEPRTLYKFR   91 (120)
T ss_dssp             CCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEE--ESCSEEEEESCCTTCEEEEE
T ss_pred             CCCCCCCCceeceEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCCceEEEec--CCccEEEECCCCCCCEEEEE
Confidence            456666666777888999999999887665   455 8999999443333 7776543  33568999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCEEecc
Q psy12426        483 VIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      |+|+|..|.|++|......|...
T Consensus        92 V~A~n~~G~s~~S~~~~~~T~~~  114 (120)
T 1wfu_A           92 LKVTSPSGEYEYSPVVSVATTRE  114 (120)
T ss_dssp             EEEECSSSCEEECCCEEEECCCC
T ss_pred             EEEECCCCCCCCCccEeeEcCCC
Confidence            99999999999998766555444

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.48  E-value=1.8e-13  Score=123.09  Aligned_cols=123  Identities=8%  Similarity=-0.013  Sum_probs=80.2

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccc-cCCCceeccCCcceEEEcCCeEEEEEEEeeecCc--ee
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK-KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TK  248 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~-~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~--~~  248 (616)
                      ..|.|.+++.+|.|.|+|.|.|..+.....  ...+.+... ..+|.+....+.. .+..|+.+.|.|.+.+.+++  .+
T Consensus        73 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~--~~~l~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v  149 (212)
T 1q0x_L           73 AALTITGAQTEDEAIYFCALWSNNKLVFGG--GTKLTVLGQPKSSPTVTLFPPSS-EELSTAKATLVCTITDFYPGVVTV  149 (212)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSSCEEECC--CEEEEECCSCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEECCCCccCCEEEEEEEecCchhhcCC--CeEEEEecCCCCCCeeEEeCCCH-HHccCCcEEEEEEEEEEeCCCeEE
Confidence            378999999999999999999876531111  112333222 2456654322221 23468899999999986543  89


Q ss_pred             EEEECCeeecccCcEE--EEecCC----ceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        249 EWLCNDITIISKDRFK--IVNDDK----STKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       249 ~W~~~~~~~~~~~~~~--~~~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      .|++++..+..+....  ....++    ...|.|......|.|.|+|.|.|....
T Consensus       150 ~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          150 DWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             EEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             EEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            9999998876442110  111111    236888888888999999999996543

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.47  E-value=2e-12  Score=116.96  Aligned_cols=128  Identities=13%  Similarity=0.079  Sum_probs=81.3

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCC----CCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeee-c
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPG----EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-P  244 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~----~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p  244 (616)
                      ...|.|.+++++|.|.|.|.+.+..|..    .... ...+.+.. ...+|.+....+.. .+..|+.+.|.|.+.+. |
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~-~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P  155 (223)
T 1dee_B           78 TLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQ-GTLVTVSSGSASAPTLFPLVSCE-NSNPSSTVAVGCLAQDFLP  155 (223)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECC-CEEEEECSSCCBCCEEEEEECTT-CCCSSSEEEEEEEEEEEBS
T ss_pred             EEEEEECCCCHHHCEEEEEEEeccccCcccceeecC-cEEEEEccCCCCCCEEEEecCCc-ccCCCCcEEEEEEEEEEeC
Confidence            3479999999999999999999875410    0111 11233332 23455553222121 24688999999999987 7


Q ss_pred             Cc-eeEEEE-CCeeecccCcE-EEEecC---CceEEEecCCCC--CCcEEEEEEEEcCCCCcee
Q psy12426        245 IP-TKEWLC-NDITIISKDRF-KIVNDD---KSTKLKVFDSKR--GDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       245 ~~-~~~W~~-~~~~~~~~~~~-~~~~~~---~~~~l~i~~l~~--~~~g~y~c~a~n~~g~~~~  300 (616)
                      .+ .+.|++ ++..+...... .....+   ..+.|.|.....  .|.|.|+|.|.|..+....
T Consensus       156 ~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~  219 (223)
T 1dee_B          156 DSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEK  219 (223)
T ss_dssp             SCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEE
T ss_pred             CCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcc
Confidence            66 999999 88776430000 000111   023678877765  7889999999998876544

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.47  E-value=1.3e-13  Score=111.49  Aligned_cols=108  Identities=19%  Similarity=0.275  Sum_probs=82.7

Q ss_pred             cCCEEccCCCCCCC-CCCCCEEEEecCCeEEEEecCCCCC-CCCcceeEEEEEeeCCC-CceE---e-EeecCCccEEEc
Q psy12426        398 QSPITAKDPFGRPD-RPGQPTVTDWGKDHVDLEWTPPKKD-GGSPISQYIIEKKPKYG-PWEK---A-CIVPANITATSV  470 (616)
Q Consensus       398 s~~~~~~~~~~~p~-~p~~~~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~i~~~~~~~-~~~~---~-~~~~~~~~~~~l  470 (616)
                      +..+.+.+....|. +|.++++...+.+++.|+|.+|..+ .++.|.+|.|+|+..+. .|..   . ....++...++|
T Consensus         3 S~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (122)
T 1va9_A            3 SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTL   82 (122)
T ss_dssp             CCCCSSCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEE
T ss_pred             CCCEEEECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEEe
Confidence            34445556667776 7889999999999999999988652 45579999999998775 3321   1 122345689999


Q ss_pred             CCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426        471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       471 ~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      .+|.|++.|.|+|+|+|..|.|++|......|...
T Consensus        83 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~  117 (122)
T 1va9_A           83 DNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLES  117 (122)
T ss_dssp             ESCCSSCCEEEEEEEEETTEECCCCCCEECCCCSS
T ss_pred             CCCCCCCEEEEEEEEEcCCCCCCCccCEEEEeCCC
Confidence            99999999999999999999999888765554443

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.47  E-value=1.2e-12  Score=118.33  Aligned_cols=120  Identities=13%  Similarity=0.046  Sum_probs=80.2

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEec-cccCCCceeccCCcceEEEcCCeEEEEEEEee-ecC--c
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR-AKKVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPI--P  246 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~-~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-~p~--~  246 (616)
                      ...|.|.+++.+|.|.|.|.+.+.......... ..+.+. ....+|.+....+...  ..|+.+.|.|.+.+ .|.  +
T Consensus        80 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~-~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~  156 (221)
T 3m8o_H           80 TAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQG-TLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPL  156 (221)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEESCTTCCCBBCC-EEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSE
T ss_pred             EEEEEECCCCHHHCEEEEEEEECCChhheECCC-EEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCE
Confidence            347999999999999999999986311111111 123333 2334555532222222  68999999999998 665  4


Q ss_pred             eeEEEECCeeecc----------cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        247 TKEWLCNDITIIS----------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       247 ~~~W~~~~~~~~~----------~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      .+.|++++..+..          +..+.+.     +.|.|......|.|.|+|.|.+..+..
T Consensus       157 ~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~-----s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          157 SVTWSESGQGVTARNFPPSQDASGDLYTTS-----SQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             EEEESCCSTTCEEEECCCEECSSSSCEEEE-----EEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEEEEECCEECceEEcCceeeCCCCcEEEE-----EEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            8999999876521          2222221     268899999899999999999976543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.47  E-value=1.9e-12  Score=121.51  Aligned_cols=137  Identities=13%  Similarity=0.059  Sum_probs=88.6

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCC-------CCCCCCCCCCCEEecc------------ccCCCceeccCCcceEEEcC
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKG-------GPGEPSDPTAPHIARA------------KKVSPYINRDQLSDIKVRAG  231 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~-------g~~~~s~~~~~~~~~~------------~~~~P~~~~~~~~~~~v~~g  231 (616)
                      ...|.|.+++++|+|.|.|.+.|..       +...... ...+.+..            ...+|.+ ...+. ..+.+|
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~-~~~L~V~~~~~~~~~~~~~~~~~~~~v-~~~p~-~~v~~G  154 (280)
T 3fku_X           78 TAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQ-GTLVTVSSGGGGSGGGGSGGGGIQPGL-TQPPS-VSKGLR  154 (280)
T ss_dssp             EEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECC-CCEEEECC--------------CCCSB-BCCSE-EEECTT
T ss_pred             EEEEEECCCChhhCEEEEEEEecCCccccccccccEECC-CEEEEEcCCCCccCCCCCCceEeeeEE-EeCCc-EEEecC
Confidence            3479999999999999999998861       1111111 11233322            0123333 33344 889999


Q ss_pred             CeEEEEEEEee-ec-CceeEEEEC--Ceeec------------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        232 SNFEFDINVIG-EP-IPTKEWLCN--DITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       232 ~~~~l~c~~~~-~p-~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      ++++|.|.+.+ .+ .+.+.|++.  +..+.            ...++.+...+....|.|.+++.+|+|.|.|.+.|..
T Consensus       155 ~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          155 QTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             CCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             CCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            99999999998 43 478999873  22211            1356666666667789999999999999999999875


Q ss_pred             CC---ceeeEEEEEecCC
Q psy12426        296 GT---DKGTAKVTVLDIP  310 (616)
Q Consensus       296 g~---~~~~~~l~v~~~p  310 (616)
                      +.   ......|.|...|
T Consensus       235 ~~~~~~g~~t~l~V~~~~  252 (280)
T 3fku_X          235 LSAVVFGGGTKLTVLGQP  252 (280)
T ss_dssp             TTEEEEBCCCEEEEC---
T ss_pred             CCceEECCCEEEEECCCC
Confidence            22   2233456665443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.47  E-value=4e-13  Score=118.43  Aligned_cols=113  Identities=12%  Similarity=-0.003  Sum_probs=74.8

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCC-eEEEEEEEeee-cCcee
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGS-NFEFDINVIGE-PIPTK  248 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~-~~~l~c~~~~~-p~~~~  248 (616)
                      ...|.|.+++..|.|.|+|.|.+..|....   ...+.+......|.+....   .....|. .+.|.|.+.+. |.+.+
T Consensus        69 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~---~~~L~V~~~~~~p~i~~~~---~~~~~g~~~v~L~C~~~g~~p~p~i  142 (193)
T 2if7_A           69 SYSLQLSNLKMEDTGSYRAQISTKTSAKLS---SYTLRILRQLRNIQVTNHS---QLFQNMTCELHLTCSVEDADDNVSF  142 (193)
T ss_dssp             TCCEEECSCCGGGCEEEEEEEECSSCEEEE---EEEEEEECCCEEEEEEECC---C---CSSEEEEEEEEEESCCTTCEE
T ss_pred             CeEEEECCCCcccCceEEEEEEecCCCeEE---EEEEEEEccCCCCeEecCc---eeecCCCceEEEEEEEecCCCceEE
Confidence            348999999999999999999988765221   1223332222224432211   1233455 89999999985 58899


Q ss_pred             EEEECCeeecccCcEEEEecCCceEEEecCCCCC-CcEEEEEEEEcCCCCcee
Q psy12426        249 EWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRG-DSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       249 ~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~-~~g~y~c~a~n~~g~~~~  300 (616)
                      .|++++..+..+.           .|.|...... |.|.|+|.|.|..|..+.
T Consensus       143 ~W~~~g~~l~~~~-----------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~  184 (193)
T 2if7_A          143 RWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAVSNLSF  184 (193)
T ss_dssp             EEEETTEEEESSS-----------EEEEEECTTTCSCCEEEEEEEETTEEEEE
T ss_pred             EEEeCCEEcCCCC-----------eEEEEeccCcCCCCcEEEEEECCCCcccc
Confidence            9999987654322           4555433343 899999999998887643

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.47  E-value=1.8e-13  Score=126.69  Aligned_cols=124  Identities=8%  Similarity=-0.033  Sum_probs=79.9

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCc-eeE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-TKE  249 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~-~~~  249 (616)
                      ..|.|.+++.+|.|.|+|.|.|..+... +. ...+.+.....+|.+....+.. .+..|+.+.|.|.+.+. |.+ .+.
T Consensus       109 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~-~~-~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~~v~  185 (252)
T 3bkj_L          109 FTLRISRVEAEDLGVYYCFQASLVPLTF-GA-GTKLELKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVK  185 (252)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSBSSCEE-CC-CEEEEECCCCBCCEEEEECCCH-HHHHHTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCccEE-CC-CEEEEEeCCCcCcEEEEeCCCh-hhcCCCcEEEEEEEeeEeCCCcEEE
Confidence            3789999999999999999988654211 11 1123333333456654322221 12368899999999985 443 799


Q ss_pred             EEECCeeecccCcEE--EEe-cCC----ceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        250 WLCNDITIISKDRFK--IVN-DDK----STKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       250 W~~~~~~~~~~~~~~--~~~-~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      |++++..+.......  ... .++    ...|.|..+...|.|.|+|.|.|.....
T Consensus       186 W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          186 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             EEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             EEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            999998875431111  111 111    1368899998889999999999965443

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.46  E-value=8e-14  Score=111.36  Aligned_cols=103  Identities=21%  Similarity=0.274  Sum_probs=82.5

Q ss_pred             cCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCC
Q psy12426        398 QSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEG  476 (616)
Q Consensus       398 s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~  476 (616)
                      +..+.+.+....|++|.++++...+.+++.|+|.+|..  + .|.+|.|+|+..+. .|....  ......++|.+|.|+
T Consensus         6 S~~~~~~t~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~--~-~i~~Y~v~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~   80 (115)
T 1x5z_A            6 SGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRS--D-TIANYELVYKDGEHGEEQRIT--IEPGTSYRLQGLKPN   80 (115)
T ss_dssp             CCCCCCCCCSCCCCCCEEEEEECSSSSEEEEEEECCSC--C-CCCEEEECBEESSSCCCBCCE--ECSSSEEEEECCCTT
T ss_pred             CCCEEEECCCCCCCCCccCEeeeCCCCEEEEEEcCCCC--C-CccEEEEEEEeCCCCCceEEe--cCCCcEEEECCCCCC
Confidence            45566667778899999999999999999999998754  2 69999999988765 443222  234689999999999


Q ss_pred             CeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426        477 EEYEFRVIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       477 t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      +.|.|+|+|.|..|.|++|....+.|...
T Consensus        81 t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~  109 (115)
T 1x5z_A           81 SLYYFRLAARSPQGLGASTAEISARTMQS  109 (115)
T ss_dssp             CEEEECEEEECSSCEEEECCCEEEECCCC
T ss_pred             CeEEEEEEEECCCcccCCCcCEEEecCCC
Confidence            99999999999999999888666544443

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2.2e-13  Score=109.44  Aligned_cols=94  Identities=32%  Similarity=0.527  Sum_probs=81.0

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .+|++|.++.+..++.+++.|+|.+|..+++.+|.+|.|+|+..+. .|..... ......+++.+|.|++.|.|||+|.
T Consensus        16 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~w~~~~~-~~~~~~~~v~~L~p~t~Y~frV~A~   94 (120)
T 2yux_A           16 DRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIE-HYHRTSATITELVIGNEYYFRVFSE   94 (120)
T ss_dssp             CCCCCCSCEEEEEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTTCCCEEEES-SCCSSCCEECCCCSSEEEEEEECCC
T ss_pred             cCCCcCCCCEEEEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCCCceEEeee-cCCcCEEEECCCCCCCEEEEEEEEe
Confidence            6889999999999999999999999877777789999999998765 7876532 4557889999999999999999999


Q ss_pred             cCCCCCCCCCCCCCEE
Q psy12426        487 NKGGPGEPSKASAPVT  502 (616)
Q Consensus       487 n~~G~g~~s~~~~~~~  502 (616)
                      |..|.|++|..+...+
T Consensus        95 n~~G~s~~S~~s~~~~  110 (120)
T 2yux_A           95 NMCGLSEDATMTKESA  110 (120)
T ss_dssp             SSSCSCSSCEECSSCE
T ss_pred             eCCcCCCCccCcCCce
Confidence            9999999998665443

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.46  E-value=1.8e-13  Score=122.87  Aligned_cols=123  Identities=15%  Similarity=0.071  Sum_probs=80.2

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCc-ee
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-TK  248 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~-~~  248 (616)
                      ..|.|.+++++|.|.|+|.|.|....+.    ...+.+.. ...+|.+....+. ..+..|+.+.|.|.+.+. |.+ .+
T Consensus        78 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~----~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v  152 (210)
T 3d9a_H           78 YYLDLNSVTTEDTATYYCANWDGDYWGQ----GTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTV  152 (210)
T ss_dssp             EEEEECSCCGGGCEEEEEEETTSSCBCC----CEEEEECCCCCBCCEEEEECCT-TSCCCSSEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEECCCCcccCEEEEEEEecCccccc----ceEEEeccCCCCCCEEEEecCC-cccccCCcEEEEEEEeeEecCCcEE
Confidence            3799999999999999999988531111    11233332 2345655422222 235689999999999987 887 99


Q ss_pred             EEEECCeeecccCcEEEEecC---CceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        249 EWLCNDITIISKDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       249 ~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      .|++++..+.......+...+   ....|.|.....++ |.|+|.|.|..|....
T Consensus       153 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          153 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             EEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             EEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            999988753211000011111   12368888888766 9999999998776543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.46  E-value=5.4e-13  Score=120.48  Aligned_cols=126  Identities=8%  Similarity=-0.039  Sum_probs=81.8

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCC-CCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeee-cC--
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPG-EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PI--  245 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~-~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~--  245 (616)
                      ...|.|.+++++|.|.|.|.+.+..+.. .... ...+.+.. ...+|.+....  ...+..|+.+.|.|.+.+. |.  
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~-~~~L~V~~~~~~~P~v~~~~--~~~~~~g~~v~L~C~~~g~~P~~~  154 (220)
T 2fbj_H           78 SLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQ-GTLVTVSAESARNPTIYPLT--LPPALSSDPVIIGCLIHDYFPSGT  154 (220)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTTEEEEECC-CEEEEECSSCCBCCEEEEEC--CCSSSCCSSEEEEEEEEEEBSCCC
T ss_pred             EEEEEECCCChhhCEEEEEEEeccccccceecC-CEEEEecCCCCCCCEEEEee--cccccCCCcEEEEEEEEeEECCCc
Confidence            3479999999999999999999875421 0111 11233332 22455553222  2234689999999999987 66  


Q ss_pred             ceeEEEECCeeecc-cCcEEEEecCC---ceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        246 PTKEWLCNDITIIS-KDRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       246 ~~~~W~~~~~~~~~-~~~~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      +.+.|++++..+.. ........++.   .+.|.|......|.|.|+|.|.|..|...
T Consensus       155 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          155 MNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            79999999876421 01111111111   12588888888899999999999887654

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.46  E-value=6e-13  Score=122.18  Aligned_cols=128  Identities=11%  Similarity=0.026  Sum_probs=81.8

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEee-ecCc
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIP  246 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-~p~~  246 (616)
                      ...|.|.+++.+|.|.|+|.+.+..+..........+.+..   ...+|.+....+....+..|+.+.|.|.+.+ .|.+
T Consensus        74 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  153 (240)
T 3q5y_A           74 HSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDH  153 (240)
T ss_dssp             CEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCC
Confidence            44899999999999999999984322111111111233332   2355655443444444556899999999998 5555


Q ss_pred             -eeEEEECCeeecccCcE----EEEecCC---ceEEEecCCCCCC-cEEEEEEEEcCCCCc
Q psy12426        247 -TKEWLCNDITIISKDRF----KIVNDDK---STKLKVFDSKRGD-SGIYTLAVKNSWGTD  298 (616)
Q Consensus       247 -~~~W~~~~~~~~~~~~~----~~~~~~~---~~~l~i~~l~~~~-~g~y~c~a~n~~g~~  298 (616)
                       .+.|++++..+....+.    ....++.   .+.|.|......| .|.|+|.|.|.....
T Consensus       154 ~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~  214 (240)
T 3q5y_A          154 VELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE  214 (240)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             eEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence             78999999987643221    1111111   1248888888777 679999999865433

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.46  E-value=1.1e-13  Score=109.82  Aligned_cols=99  Identities=26%  Similarity=0.297  Sum_probs=78.5

Q ss_pred             ccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEE
Q psy12426        403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       403 ~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      +.+...+|++|.++++...+.+++.|.|.+|...++ .|.+|.|+|+..+...............++|.+|.|++.|.|+
T Consensus         4 ~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   82 (111)
T 1x5l_A            4 GSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQ   82 (111)
T ss_dssp             CCCSCCCCCCCCCEECSCBCSSCEEEEECCCSCCCS-CCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEEC
T ss_pred             EEcCCCCCCCCceEEEEEcCCCEEEEEECCCCCCCC-EEEEEEEEEEECCCCceeEEEecCCCCEEEEcCCCCCCEEEEE
Confidence            455668899999999888899999999998865444 6999999998876411112233455789999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCEE
Q psy12426        483 VIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~~~~  502 (616)
                      |+|.|..|.|++|....+.+
T Consensus        83 V~A~n~~G~g~~S~~~~~~T  102 (111)
T 1x5l_A           83 VRARTSAGCGRFSQAMEVET  102 (111)
T ss_dssp             EEEEETTEECCCCCCEEEEC
T ss_pred             EEEEeCCcCCCCcccEEEEc
Confidence            99999999999988655433

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.46  E-value=6.9e-13  Score=123.40  Aligned_cols=70  Identities=13%  Similarity=0.165  Sum_probs=52.9

Q ss_pred             ceEEEcCCeEEEEEEEeeecC--ceeEEEECC--ee---ec--------------ccCcEEEEe--cCCceEEEecCCCC
Q psy12426        225 DIKVRAGSNFEFDINVIGEPI--PTKEWLCND--IT---II--------------SKDRFKIVN--DDKSTKLKVFDSKR  281 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~--~~~~W~~~~--~~---~~--------------~~~~~~~~~--~~~~~~l~i~~l~~  281 (616)
                      ...+.+|++++|.|.+.+.+.  +.+.|+++.  ..   +.              ...++.+..  ......|.|.+++.
T Consensus       147 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  226 (264)
T 2gjj_A          147 PEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTS  226 (264)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCc
Confidence            346889999999999998864  789999863  21   11              023444432  33457899999999


Q ss_pred             CCcEEEEEEEEcC
Q psy12426        282 GDSGIYTLAVKNS  294 (616)
Q Consensus       282 ~~~g~y~c~a~n~  294 (616)
                      .|+|.|.|.+.|.
T Consensus       227 ~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          227 EDSADYYCVRSGN  239 (264)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccCEEEEEEEecC
Confidence            9999999999985

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=4.3e-13  Score=106.70  Aligned_cols=91  Identities=23%  Similarity=0.337  Sum_probs=75.0

Q ss_pred             cCCC-CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEE
Q psy12426        404 KDPF-GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       404 ~~~~-~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      .+.. ..|++|.++++...+ +++.|+|.+|..+++ .|.+|.|+|+... .+............++|.+|.|++.|.|+
T Consensus        11 ~t~e~~~P~~P~~l~~~~~~-~sv~l~W~~P~~~ng-~i~gY~i~y~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~   87 (116)
T 2edb_A           11 DLDESQVPDQPSSLHVRPQT-NCIIMSWTPPLNPNI-VVRGYIIGYGVGS-PYAETVRVDSKQRYYSIERLESSSHYVIS   87 (116)
T ss_dssp             SCBCSSCCCCCSCEEEEECS-SCEEEEECCCSCTTB-CCCEEEEEEEESS-TTSEEEEEETTCCEEEECSCCSSSBEEEE
T ss_pred             cCCCCCCCCCCCCeEEEECC-CEEEEEEcCCCCCCC-ceeEEEEEEEeCC-CCeEEEEeCCCeeEEEeCCCCCCCEEEEE
Confidence            3444 678999999999988 999999998876654 6999999998643 34444455677889999999999999999


Q ss_pred             EEEEcCCCCCCCCCC
Q psy12426        483 VIAVNKGGPGEPSKA  497 (616)
Q Consensus       483 v~a~n~~G~g~~s~~  497 (616)
                      |+|+|..|.|+++..
T Consensus        88 V~A~n~~G~g~~~~~  102 (116)
T 2edb_A           88 LKAFNNAGEGVPLYE  102 (116)
T ss_dssp             EEEEETTEECSCEEE
T ss_pred             EEEEeCCccCCCCcc
Confidence            999999999987653

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=111.82  Aligned_cols=110  Identities=17%  Similarity=0.258  Sum_probs=82.7

Q ss_pred             cCCEEccCCCCCCC-CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC----CceEeEeecCCccEEEcCC
Q psy12426        398 QSPITAKDPFGRPD-RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWEKACIVPANITATSVPD  472 (616)
Q Consensus       398 s~~~~~~~~~~~p~-~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~----~~~~~~~~~~~~~~~~l~~  472 (616)
                      +..+.+.+....|. +|.++++..++.+++.|+|.+|... ++.|.+|.|+|+..+.    .|...  .......++|.+
T Consensus         6 S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~-~g~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~~i~~   82 (121)
T 2dlh_A            6 SGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEP-NGQIQGYRVYYTMDPTQHVNNWMKH--NVADSQITTIGN   82 (121)
T ss_dssp             CSSSCSCCCCCCCCSCCEEEEECCCSSSBCCEEEECCSCC-CSCEEEEEEECCSCTTSCTTTSCCC--CCSSCSEECCBS
T ss_pred             CCCEEEECCCcCCCCCCcccEEEecCCCEEEEEECCCCCC-CCcEeEEEEEEEeCCCCCccccEEE--ecCCceEEEecC
Confidence            44555566666664 8889998888999999999988544 4469999999987654    23221  234578999999


Q ss_pred             CCCCCeEEEEEEEEcCCCCCCCCCCCCCEEeccCcCCC
Q psy12426        473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP  510 (616)
Q Consensus       473 L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p  510 (616)
                      |.|++.|.|+|+|.|..|.|++|....+.|....+.+|
T Consensus        83 L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~P~~P  120 (121)
T 2dlh_A           83 LVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGPSS  120 (121)
T ss_dssp             CCSSCEEEEEEEEEESSCBCCCCCCEEEECCCCCSCCC
T ss_pred             CCCCCEEEEEEEEEeCCccCCCCCCEEEECCCCCCCCC
Confidence            99999999999999999999998766555544444433

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.45  E-value=1.3e-12  Score=125.37  Aligned_cols=211  Identities=10%  Similarity=0.042  Sum_probs=127.2

Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEe-eecCcee
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTK  248 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~-~~p~~~~  248 (616)
                      ...+|.|.+++.+|.|.|+|.+.+..+.....    .+.+. ...+|.+.. ......+..++.+.+.|.+. +.|.+.+
T Consensus        77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~----~~~l~-v~~~P~~~~-~~~~~~~~~~~~~~~~C~~~~~~P~~~i  150 (313)
T 4fqp_A           77 RNASLRMFGLRVEDEGNYTCLFVTFPQGSRSV----DIWLR-VLAKPQNTA-EVQKVQLTGEPVPMARCVSTGGRPPAQI  150 (313)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEECSSSCEEEE----EEEEC-CBBCCEEEE-EECCBCCCSSCEEEEEEEEEEEBSCCEE
T ss_pred             cceEEEECcCChhhCEEEEEEEeeccCcceee----eeeee-eccCCccee-cccceEeecCceEEEEEEccCccCCcEE
Confidence            34579999999999999999986543321111    12221 233454432 23344566788888999875 7789999


Q ss_pred             EEEECCeeecccCcEEEEecCC---ceEEEecCCCCCCcEEEEEEEEcCCCCceeeE--EEEEecCCCCCCCCc-cceee
Q psy12426        249 EWLCNDITIISKDRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA--KVTVLDIPSPPEGPL-KPSNI  322 (616)
Q Consensus       249 ~W~~~~~~~~~~~~~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~--~l~v~~~p~~p~~~~-~~~~~  322 (616)
                      .|++++..+...........+.   .+.|.|......|.|.|+|.|.|..+......  .+.+..+|.....+. .....
T Consensus       151 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~  230 (313)
T 4fqp_A          151 TWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYL  230 (313)
T ss_dssp             EEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEET
T ss_pred             EeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeec
Confidence            9999988765433222222221   23688999999999999999999777654433  344444443211111 12233


Q ss_pred             cCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        323 TKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       323 ~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      .+..+.|.|...+..  .+ ..+  .|...+.. ...........+.|.++...+.+.|+|.|.|..|..
T Consensus       231 ~g~~v~l~C~~~g~P--~p-~~v--~W~~~~~~-l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  294 (313)
T 4fqp_A          231 GQNEATLTCDARSNP--EP-TGY--NWSTTMGP-LPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGAR  294 (313)
T ss_dssp             TCCCEEEEEEEEEES--CC-CEE--EEEETTBS-CCTTEEEETTEEEECCCSSCCEEEEEEEEECSSCEE
T ss_pred             CCCeEEEEEEecCCC--CC-cEE--EEEECCEE-CCCceEEeCCEEEECcCChhhCEEEEEEEEeCCCcE
Confidence            456788888753221  11 122  22222111 000001223578999999999999999999999864

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.44  E-value=2.8e-13  Score=121.10  Aligned_cols=120  Identities=15%  Similarity=0.067  Sum_probs=71.5

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEe-ccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cC-ceeE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA-RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PI-PTKE  249 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~-~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~-~~~~  249 (616)
                      .|.|.+++.+|.|.|+|.|.|..|.....   ..+.. .....+|.+........ ...|+.+.|.|.+.+. |. +.+.
T Consensus        69 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~---~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~  144 (207)
T 2vol_A           69 ELPIMHQDWLNGKEFKCRVNSAAFPAPIE---KTISKTKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVE  144 (207)
T ss_dssp             EEECCHHHHHTTCCEEEEEECTTCSSCEE---EEECCCCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEehhHcCCCCEEEEEEEccCCCCceE---EEeccCCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEE
Confidence            57788888888888888888876642110   01111 02234565542222211 1258899999999985 44 3899


Q ss_pred             EEECCeeecccCcE--EEEecCC---ceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        250 WLCNDITIISKDRF--KIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       250 W~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      |++++..+......  ....++.   .+.|.|......+.|.|+|.|.|...
T Consensus       145 W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          145 WESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             EEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            99999976432211  1111111   12345555545578999999999654

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.44  E-value=6e-14  Score=128.28  Aligned_cols=121  Identities=7%  Similarity=-0.038  Sum_probs=68.8

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCc--eeEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP--TKEW  250 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~--~~~W  250 (616)
                      .|.|.+++.+|.|.|+|.|.|..+......  ..+.+.....+|.+....+... +..|+.+.|.|.+.+.+++  .+.|
T Consensus        94 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~--~~l~V~~~~~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W  170 (233)
T 3bqu_C           94 VFTIENMLSEDVADYYCLQSDNLPYTFGGG--TNLEIKRADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKW  170 (233)
T ss_dssp             EEC-----CCCCSEEEEEECSSSSCCBCCC--CBC---CCCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCEEEEE
T ss_pred             EEEECCCCHHHCEEEEEEEecCCceeecCC--EEEEEeCCCCCCEEEEeCCCHH-hhcCCceEEEEEEccccCCceEEEE
Confidence            689999999999999999988765322111  1233333334566543222221 2368999999999986443  7999


Q ss_pred             EECCeeecccCcEE--EEec-CC----ceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        251 LCNDITIISKDRFK--IVND-DK----STKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       251 ~~~~~~~~~~~~~~--~~~~-~~----~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      ++++..+..+....  .... ++    ...|.|......|.|.|+|.|.|...
T Consensus       171 ~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          171 KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             EECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            99998765431111  1111 11    23688888888899999999999643

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.44  E-value=8.7e-13  Score=123.24  Aligned_cols=122  Identities=15%  Similarity=0.108  Sum_probs=75.6

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecccc----CCCc-------------eeccCCcceEEEcCCeEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK----VSPY-------------INRDQLSDIKVRAGSNFE  235 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~----~~P~-------------~~~~~~~~~~v~~g~~~~  235 (616)
                      .|.|.+++++|.|.|.|.+.|..+........+.+......    .+|.             +....+....+.+|++++
T Consensus        91 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~  170 (268)
T 1x9q_A           91 TLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMK  170 (268)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEE
T ss_pred             EEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEE
Confidence            68888888888888888887764321111111112211110    1121             112223467889999999


Q ss_pred             EEEEEeeecC--ceeEEEECC--eee-------------------cccCcEEEEec--CCceEEEecCCCCCCcEEEEEE
Q psy12426        236 FDINVIGEPI--PTKEWLCND--ITI-------------------ISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       236 l~c~~~~~p~--~~~~W~~~~--~~~-------------------~~~~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~  290 (616)
                      |.|.+.+.+.  +.+.|++..  ..+                   ....++.+...  .....|.|.+++.+|+|.|.|.
T Consensus       171 L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  250 (268)
T 1x9q_A          171 LSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCT  250 (268)
T ss_dssp             EEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEE
Confidence            9999998763  789999852  211                   01245555432  2346899999999999999999


Q ss_pred             EEcC
Q psy12426        291 VKNS  294 (616)
Q Consensus       291 a~n~  294 (616)
                      +.+.
T Consensus       251 a~~~  254 (268)
T 1x9q_A          251 GASY  254 (268)
T ss_dssp             EEET
T ss_pred             EccC
Confidence            9874

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=99.44  E-value=2e-12  Score=100.15  Aligned_cols=88  Identities=18%  Similarity=0.257  Sum_probs=73.8

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      ..|++|.++++..++.+++.|+|.+|... ++.+.+|.|+|+..+. .+.....++.+..+++|.+|.|++.|.|+|+|.
T Consensus         6 t~~~~P~~l~v~~~t~~Sv~lsW~~p~~~-~g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~~L~p~t~Y~~~V~A~   84 (103)
T 3t04_D            6 SVSSVPTKLEVVDATPTSLKISWDAYYSS-WQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYAY   84 (103)
T ss_dssp             CCCCCCCSCEEEEEETTEEEEECTTTTTT-SCCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEE
T ss_pred             ccCCCCceeEEEecCCCEEEEEccCCCCC-CCccceEEEEEEECCCCCccEEEEcCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            56889999999999999999999987654 4469999999998754 344445566778999999999999999999999


Q ss_pred             cC--CCCCCCCCC
Q psy12426        487 NK--GGPGEPSKA  497 (616)
Q Consensus       487 n~--~G~g~~s~~  497 (616)
                      |.  .|.|+ |.+
T Consensus        85 ~~~~~G~~~-S~p   96 (103)
T 3t04_D           85 DTFFPGYEP-NSP   96 (103)
T ss_dssp             SCCCTTCCC-SCC
T ss_pred             eCCCCCCCC-CCC
Confidence            99  88887 543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.44  E-value=5.4e-13  Score=120.67  Aligned_cols=122  Identities=13%  Similarity=0.060  Sum_probs=80.7

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCC-CCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCc-e
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPG-EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-T  247 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~-~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~-~  247 (616)
                      ..|.|.+++.+|.|.|.|.+.|..+.. .... ...+.+.. ...+|.+....+. ..+..|+.+.|.|.+.+. |.+ .
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~  158 (220)
T 1pz5_B           81 VYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQ-GTSVTVSSATTTAPSVYPLVPG-CSDTSGSSVTLGCLVKGYFPEPVT  158 (220)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSSEEEECC-CEEEEECSSCCBCCEEEEECCC-SCCSCSSSEEEEEEEEEEBSSCCE
T ss_pred             EEEEEccCCHHHCEEEEEEEecCCcccceECC-CEEEEEccCCCCCCeEEEcccc-cccCCCCcEEEEEEEEEEeCCCeE
Confidence            379999999999999999999875321 1111 11233332 2245655322222 235689999999999998 888 9


Q ss_pred             eEEEECCeee----cc----cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        248 KEWLCNDITI----IS----KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       248 ~~W~~~~~~~----~~----~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      +.|++++...    ..    ...+..     ...|.|.+...++ |.|+|.|.|..|....+
T Consensus       159 v~W~~~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  214 (220)
T 1pz5_B          159 VKWNYGALSSGVRTVSSVLQSGFYSL-----SSLVTVPSSTWPS-QTVICNVAHPASKVDLI  214 (220)
T ss_dssp             EEEGGGTCCTTEEECCCEEETTEEEE-----EEEEEECGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             EEEecCCcccceEEcCCcccCCeEEE-----EEEEEEcchhcCC-ceEEEEEEECCccEeee
Confidence            9999987631    00    011111     2478888888766 99999999988865444

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.44  E-value=1.2e-13  Score=124.62  Aligned_cols=121  Identities=17%  Similarity=0.114  Sum_probs=70.4

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEe-ccccCCCceeccCCcceEEEcCCeEEEEEEEee-ecCc-eeE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA-RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIP-TKE  249 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~-~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-~p~~-~~~  249 (616)
                      .|.|.+++.+|.|.|+|.|.|..+.....   ..+.. .....+|.+....+.... ..|+.+.|.|.+.| .|.+ .+.
T Consensus        77 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~---~~v~~~~~~~~~P~v~~~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~  152 (218)
T 2rgs_A           77 TLPIQHQDWMSGKEFKCKVNNKDLPSPIE---RTISKIKGLVRAPQVYILPPPAEQ-LSRKDVSLTCLVVGFNPGDISVE  152 (218)
T ss_dssp             EEECCHHHHHTTCCEEEEEEETTCSSCEE---EEECCCCCCCBCCEEEEECCCGGG-TTSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEcHHHcCCCCeEEEEEECCcCCCcce---EEEeecCCCCCCCEEEEECCChHH-hcCCceEEEEEEEeeeCCCcEEE
Confidence            57778888888888888888875532100   00110 122345655432222211 25899999999998 5665 999


Q ss_pred             EEECCeeecccCcEEEE-ecCCc----eEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        250 WLCNDITIISKDRFKIV-NDDKS----TKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       250 W~~~~~~~~~~~~~~~~-~~~~~----~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      |++++..+......... ..++.    ..|.|......|.|.|+|.|.|....
T Consensus       153 W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          153 WTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             EEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             EEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            99999887432211111 11111    12344433334589999999997543

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.44  E-value=5.7e-13  Score=107.24  Aligned_cols=95  Identities=23%  Similarity=0.290  Sum_probs=75.9

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCC-CC-----Cc--ceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCC
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKD-GG-----SP--ISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGE  477 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~-~~-----~~--i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t  477 (616)
                      ..|+....+++..++.+++.|+|.+|..+ ++     +.  +..|.|.|+..+.  .+..  ...+....++|.+|.|++
T Consensus        16 ~~~s~v~~p~v~~i~s~S~~LsW~~P~~~~~g~~~~~g~~~i~~Yev~~~~k~~~~~~~~--~~~g~~ts~~v~~L~P~T   93 (137)
T 1wk0_A           16 ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKS--VYVGEETNITLNDLKPAM   93 (137)
T ss_dssp             HHTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEE--EEEESCSEEEECSCCTTC
T ss_pred             hccCCCCCcEEEEEccCEEEEEECCCCCccCccccccccCccEEEEEEEEecCCCCceEE--EEecCccEEEEcCCCCCC
Confidence            34666778889999999999999988764 33     22  6899999977654  3333  334668899999999999


Q ss_pred             eEEEEEEEEcCCCCCCCCCCCCCEEec
Q psy12426        478 EYEFRVIAVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       478 ~Y~~~v~a~n~~G~g~~s~~~~~~~~~  504 (616)
                      .|.|||+|+|..|.|++|....+.|..
T Consensus        94 ~Y~~rV~A~n~~G~G~~S~~~~f~T~~  120 (137)
T 1wk0_A           94 DYHAKVQAEYNSIKGTPSEAEIFTTLS  120 (137)
T ss_dssp             EECEEEEEEETTEECCCCCCCCEECCC
T ss_pred             EEEEEEEEEeCCCcCCCCCCEEEECCC
Confidence            999999999999999999988775543

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.43  E-value=3.9e-13  Score=105.79  Aligned_cols=95  Identities=25%  Similarity=0.322  Sum_probs=76.6

Q ss_pred             CCCCCCCCCCEEEE--ecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEE
Q psy12426        407 FGRPDRPGQPTVTD--WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       407 ~~~p~~p~~~~~~~--~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      ...|++|.++++..  .+.+++.|+|.+|.. .++.|.+|.|+|+..+. .|....   .....++|.+|.|++.|.|+|
T Consensus         5 ~~~P~~P~~l~~~~~~~~~~sv~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~l~~L~p~t~Y~~~V   80 (108)
T 2dm4_A            5 SSGPDAPRNLQLSLPREAEGVIVGHWAPPIH-THGLIREYIVEYSRSGSKMWASQR---AASNFTEIKNLLVNTLYTVRV   80 (108)
T ss_dssp             CCCTTSCEEEEEECCTTCSSCEEEEEECCSC-CSSCEEEEEEEEEETTCSCCEEEE---ESSSEEEECSCCSSCEEEEEE
T ss_pred             CCCCcCCcCeEEEEeccCCCEEEEEEcCCCC-CCCcEEEEEEEEEECCCCCeEEec---CCccEEEeCCCCCCCEEEEEE
Confidence            35788898988766  578999999998864 45579999999998776 676542   235699999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCEEecc
Q psy12426        484 IAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      +|+|..|.|++|......|...
T Consensus        81 ~A~n~~G~g~~S~~~~~~T~~~  102 (108)
T 2dm4_A           81 AAVTSRGIGNWSDSKSITTIKG  102 (108)
T ss_dssp             EEEESSCEEEECCCEEEECCSC
T ss_pred             EEECCCceeCCCCCEEEECCCC
Confidence            9999999999988665544433

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.43  E-value=1.1e-12  Score=115.98  Aligned_cols=171  Identities=20%  Similarity=0.248  Sum_probs=119.0

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC--cEEEEecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      +|.|. ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ++.+...+....|.|.++...|.|.|+|.+.
T Consensus         5 ~P~~~-~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            5 APTFT-QPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEE-ccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            45553 34567889999999999999999999999999998876543  5555555667799999999999999999999


Q ss_pred             cCCCCceeeEEEEEecCCCCCC---CCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC-----CCCEEEccccc
Q psy12426        293 NSWGTDKGTAKVTVLDIPSPPE---GPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME-----TGRWVPMGDVS  364 (616)
Q Consensus       293 n~~g~~~~~~~l~v~~~p~~p~---~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~-----~~~~~~~~~~~  364 (616)
                      |..|.......+.+...+.+|.   .+.......+..+.|.|......    ...  +.|...+     ...........
T Consensus        84 n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p----~~~--v~W~~~~~~~~~~~~~~~~~~~~  157 (194)
T 2a38_A           84 NGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIP----TPV--VKFYRDGAEIQSSLDFQISQEGD  157 (194)
T ss_dssp             ETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEES----CCE--EEEEETTEECCCSSSEEEEEETT
T ss_pred             cCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEec----CCe--EEEEECCEECCCCCcEEEEEcCC
Confidence            9988877777787775333322   11123344566788888753221    111  2222211     11122112223


Q ss_pred             cceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        365 GTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       365 ~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      ...+.|.++...+.+.|+|.|.|..|..
T Consensus       158 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  185 (194)
T 2a38_A          158 LYSLLIAEAYPEDSGTYSVNATNSVGRA  185 (194)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEEETTEEE
T ss_pred             EEEEEECCCChhcCeEEEEEEEeCCCce
Confidence            3468888999999999999999998864

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.43  E-value=8.3e-13  Score=105.74  Aligned_cols=98  Identities=34%  Similarity=0.508  Sum_probs=81.8

Q ss_pred             CCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEE
Q psy12426        406 PFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       406 ~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      ....|.+|.++.+...+.+++.|.|.+|. +++.++.+|.|+|+..+.  .|..... ......+++.+|.|++.|.|||
T Consensus        12 ~~~~P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~frV   89 (117)
T 1uem_A           12 LSDLPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVAN-HVKTTLYTVRGLRPNTIYLFMV   89 (117)
T ss_dssp             SCCSCBCCCCCEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEEE-EECSSEEEECSCCTTCEEEEEE
T ss_pred             CCCCccCCCCCEEEEecCCEEEEEEeCCC-CCCcCceEEEEEEEECCCCCceeEccc-ccCcCEEEECCCCCCCEEEEEE
Confidence            35788999999999999999999999876 566679999999988753  6665432 3357799999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCEEecc
Q psy12426        484 IAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      +|+|..|.|++|..+..+++.+
T Consensus        90 ~A~n~~G~s~~S~~~~~v~t~~  111 (117)
T 1uem_A           90 RAINPQGLSDPSPMSDPVRTQD  111 (117)
T ss_dssp             EEEETTEEEEECCCCCCEECCC
T ss_pred             EEECCCccCCCcCCCccEEccC
Confidence            9999999999999888666554

>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=3.3e-13  Score=109.09  Aligned_cols=104  Identities=23%  Similarity=0.254  Sum_probs=79.2

Q ss_pred             cCCEEccCCCCCCC-CCCCCEEE-EecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCC----CceEeEeecCCccEEEc
Q psy12426        398 QSPITAKDPFGRPD-RPGQPTVT-DWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYG----PWEKACIVPANITATSV  470 (616)
Q Consensus       398 s~~~~~~~~~~~p~-~p~~~~~~-~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~----~~~~~~~~~~~~~~~~l  470 (616)
                      +..+.+.+....|. +|.++++. ..+.+++.|+|.+|. ...++.|.+|+|+|+..+.    .|..  ........++|
T Consensus         6 S~~v~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~~~l   83 (124)
T 2dbj_A            6 SGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLE--EVGQNGSRARI   83 (124)
T ss_dssp             CCCCCCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEEEEEE--EEESTTSCEEE
T ss_pred             CCCEEEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCccceEE--EeCCCcceEEe
Confidence            45566677777776 77788887 578999999999884 2334479999999974322    3322  23456789999


Q ss_pred             CCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEe
Q psy12426        471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC  503 (616)
Q Consensus       471 ~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~  503 (616)
                      .+|.|++.|.|+|+|+|..|.|++|......+.
T Consensus        84 ~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~~~~T~  116 (124)
T 2dbj_A           84 SVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIP  116 (124)
T ss_dssp             ECCCSSSEEEECEEEEESSCBCCCCCCEEEECC
T ss_pred             cCCCCCCEEEEEEEEECCCccCCCCCCEEEEcC
Confidence            999999999999999999999999886555443

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.43  E-value=7.2e-13  Score=120.17  Aligned_cols=124  Identities=13%  Similarity=0.022  Sum_probs=78.5

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCC----C--CCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeee
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGP----G--EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE  243 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~----~--~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~  243 (616)
                      ...|.|.+++.+|.|.|.|.+.|..|.    .  .... ...+.+.. ...+|.+....+.. .+..|+.+.|.|.+.+.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~-~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~  155 (225)
T 1op3_H           78 FVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGP-GTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDY  155 (225)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECC-CEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEecCCCccccccceeecC-CEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeE
Confidence            347999999999999999999987651    0  0111 11233332 22345553322222 24679999999999987


Q ss_pred             -cCc-eeEEEECCeeeccc-CcEEEEecCC---ceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        244 -PIP-TKEWLCNDITIISK-DRFKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       244 -p~~-~~~W~~~~~~~~~~-~~~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                       |.+ .+.|++++..+... .......++.   ...|.|.+....| |.|+|.|.|..+.
T Consensus       156 ~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          156 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (225)
T ss_dssp             BSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred             ECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence             766 99999988653211 0001111111   2368898888888 9999999995443

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.43  E-value=1.2e-12  Score=126.71  Aligned_cols=207  Identities=10%  Similarity=0.022  Sum_probs=129.7

Q ss_pred             CCCCeEEeecccCCCeEEEEEE-EEeCCCCCCCCCCCCCEEeccccCCCcee-ccCCcceEEEcC---CeEEEEEE-Eee
Q psy12426        169 GDTPKGKVLDLIEGNQYEFRVL-AVNKGGPGEPSDPTAPHIARAKKVSPYIN-RDQLSDIKVRAG---SNFEFDIN-VIG  242 (616)
Q Consensus       169 ~~~~~l~i~~l~~~~~~~y~c~-a~n~~g~~~~s~~~~~~~~~~~~~~P~~~-~~~~~~~~v~~g---~~~~l~c~-~~~  242 (616)
                      .....|.|.+++..|.|.|+|. +.+..|.....   ..+.+   ..+|.+. ......+.+..|   +.+.|.|. +.+
T Consensus        89 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~---~~l~V---~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~  162 (331)
T 3u83_A           89 FTDGTIRLSRLELEDEGVYICEFATFPTGNRESQ---LNLTV---MAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANG  162 (331)
T ss_dssp             SSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEE---EEEEE---EBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEE
T ss_pred             CCCceEEEcccCcccCcEEEEEEEecCCCccEEE---EEEEE---ecCCcceeecCCCceeecCCCccceEEEEEEecCC
Confidence            3456799999999999999998 45544432111   11222   2344442 234566778888   77999997 889


Q ss_pred             ecCceeEEEECCeeec-------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCC
Q psy12426        243 EPIPTKEWLCNDITII-------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG  315 (616)
Q Consensus       243 ~p~~~~~W~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~  315 (616)
                      .|.+.+.|++++....       ....+.+     ...|.|..+...|.|.|+|.|.|..|.....+.+.+..+|.....
T Consensus       163 ~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~  237 (331)
T 3u83_A          163 KPPSVVSWETRLKGEAEYQEIRNPNGTVTV-----ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIE  237 (331)
T ss_dssp             BSCCEEEEEESSCCEEEEEEEECTTSCEEE-----EEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEE
T ss_pred             cCCceEEEEcCCCCccccceeECCCCcEEE-----EEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEe
Confidence            9999999999633211       1111111     136889999999999999999999888777777777655532211


Q ss_pred             Cc-cceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEec-cccCCCeEEEEEEEEecCcCC
Q psy12426        316 PL-KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAE-NLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       316 ~~-~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~-~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      +. ......+..+.|.|.......  + .  .+.|...+... ..........+.|. ++...+.+.|+|.|.|..|..
T Consensus       238 ~~~~~~~~~g~~~~l~C~~~g~p~--p-~--~i~W~~~~~~~-~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~  310 (331)
T 3u83_A          238 GFDGNWYLQRMDVKLTCKADANPP--A-T--EYHWTTLNGSL-PKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTR  310 (331)
T ss_dssp             CCCSCCBTTCCCEEEEEEEEEESC--C-C--EEEEEETTBSC-CTTEEEETTEEEECSCCCGGGCEEEEEEEEETTEEE
T ss_pred             cCCCceEeCCCeEEEEEeCcCCCC--C-C--EEEEEECCCcc-cccceecCcEEEEeCCCccccCeEEEEEEEeccccc
Confidence            11 112234677888887532211  1 1  12222211110 00001123568888 899999999999999999875

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.43  E-value=6.4e-13  Score=105.59  Aligned_cols=96  Identities=20%  Similarity=0.240  Sum_probs=75.8

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCC-CCCCcceeEEEEEeeCCCC---ceEeEeecCCccEEEcCCCCCCCeEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYGP---WEKACIVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~i~~~~~~~~---~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      .+|.+|.++.+..++.+++.|+|.+|.. ..++.|.+|.|+|+..+..   +.....+.+....++|.+|.|++.|.|+|
T Consensus         7 ~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   86 (114)
T 1x4y_A            7 GPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKM   86 (114)
T ss_dssp             SCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEE
T ss_pred             CCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCCcEeEEEcCCCCCCCEEEEEE
Confidence            4567788889999999999999998862 4556799999999876542   22223444566889999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCEEe
Q psy12426        484 IAVNKGGPGEPSKASAPVTC  503 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~~~~~  503 (616)
                      +|+|..|.|++|....+.|.
T Consensus        87 ~A~n~~G~g~~S~~v~~~T~  106 (114)
T 1x4y_A           87 QCFNEGGESEFSNVMICETK  106 (114)
T ss_dssp             EEECTTCCCCCCCCEEEECC
T ss_pred             EEEcCCccCCCcCCEEEEeC
Confidence            99999999999886554443

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.42  E-value=7.9e-12  Score=113.75  Aligned_cols=133  Identities=11%  Similarity=0.063  Sum_probs=79.5

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCC--CC--CCCCCCCCEEecc-ccCCCceeccCCcceEEEcC-CeEEEEEEEeee-
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGG--PG--EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAG-SNFEFDINVIGE-  243 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g--~~--~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g-~~~~l~c~~~~~-  243 (616)
                      ...|.|.+++++|.|.|.|.+.+..+  ..  .... ...+.+.. ...+|.+....+.. .+..| +.+.|.|.+.+. 
T Consensus        77 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~-~~~L~V~~~~~~~P~v~~~~p~~-~~~~g~~~v~L~C~~~g~~  154 (232)
T 1dn0_B           77 QFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQ-GTLVTVSSGSASAPTLFPLVSCE-NSPSDTSSVAVGCLAQDFL  154 (232)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECC-CEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEB
T ss_pred             EEEEEECCCCcccCEEEEEEEecCCcCCchhhhccc-ceEEEEccCCCCCCceEEecccc-ccCCCCCcEEEEEEEEEEe
Confidence            34799999999999999999984222  11  0111 11233332 23446553222222 24467 899999999986 


Q ss_pred             cCc-eeEEEE-CCeeecccCcE-EEEecCC---ceEEEecCCCC--CCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        244 PIP-TKEWLC-NDITIISKDRF-KIVNDDK---STKLKVFDSKR--GDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       244 p~~-~~~W~~-~~~~~~~~~~~-~~~~~~~---~~~l~i~~l~~--~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      |.+ .+.|++ ++..+...... .....+.   .+.|.|.....  .|.|.|+|.|.|..+.......+.
T Consensus       155 P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~  224 (232)
T 1dn0_B          155 PDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLP  224 (232)
T ss_dssp             SSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECC
T ss_pred             CCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecC
Confidence            776 999999 88776430000 0001111   23688888876  789999999999888765554443

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.42  E-value=3.6e-13  Score=115.86  Aligned_cols=107  Identities=8%  Similarity=-0.029  Sum_probs=73.8

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWL  251 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~  251 (616)
                      .+|.|.+++..|+|.|+|.|.|..|.     ....+.+......|.+....        . ...|.|.+.+.|.+.+.|+
T Consensus        60 ~sL~I~~v~~~DsG~Y~C~~~n~~~~-----~~~~L~V~~~~~~p~i~~~~--------~-~~~L~C~~~~~p~p~i~W~  125 (171)
T 1ccz_A           60 GSLTIYNLTSSDEDEYEMESPNITDT-----MKFFLYVLEMVSKPMIYWEC--------S-NATLTCEVLEGTDVELKLY  125 (171)
T ss_dssp             CCEEECSCCGGGCEEEEEECTTCCSC-----EEEEEEEECCCCCCEEEEET--------T-TTEEEEECSSCSSCEEEEE
T ss_pred             CeEEECCCChhhCceEEEEEeCCCCc-----EEEEEEEECcCCCCEEEEec--------C-CcEEEEEeCCCCCcEEEEE
Confidence            47999999999999999999887661     11223333333344442211        1 1379999999999999999


Q ss_pred             ECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426        252 CNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                      +++..+......         .+.+.+  .++.|.|+|.|.|..|.....+.
T Consensus       126 ~~~~~l~~~~~~---------~l~~~~--~~~~g~Y~C~a~N~~~~~~~~~~  166 (171)
T 1ccz_A          126 QGKEHLRSLRQK---------TMSYQW--TNLRAPFKCKAVNRVSQESEMEV  166 (171)
T ss_dssp             ETTEEEEEESSS---------EEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             ECCEECcCCcce---------EEEEec--cCCCceEEEEEEcccCcccceeE
Confidence            999877533222         333433  56889999999999887655443

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.42  E-value=2e-12  Score=119.47  Aligned_cols=129  Identities=16%  Similarity=0.091  Sum_probs=81.9

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCC--CCCCCCCCCEEec-cccCCCceeccCCcceEEEcCCeEEEEEEEee-ecCc
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGP--GEPSDPTAPHIAR-AKKVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIP  246 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~--~~~s~~~~~~~~~-~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-~p~~  246 (616)
                      ...|.|.+++.+|+|.|.|.+.+....  .... ....+.+. ....+|.+.... ....+..|+.+.|.|.+.+ .|.+
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~-~~~~l~V~~~~~~~P~i~~~~-~~~~~~~g~~v~L~C~~~g~~P~~  155 (253)
T 3liz_H           78 TLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWG-QGTLVTVSAAKTTPPSVYPLA-PGSAAQTNSMVTLGCLVKGYFPEP  155 (253)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCBTTTBCCEEC-CCEEEEECSSCCBCCEEEEEC-C------CCEEEEEEEEEEEBSSC
T ss_pred             EEEEEECCCChhhCEEEEEEEecCCcceeeEEC-CCEEEEEeccCCCCCeEEEec-CCcccCCCCcEEEEEEEeeEeCCC
Confidence            347999999999999999999875211  0011 11123333 334556553222 2234557999999999998 6666


Q ss_pred             -eeEEEECCeeec--------ccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        247 -TKEWLCNDITII--------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       247 -~~~W~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                       .+.|++++..+.        ....+.+.     +.|.|......| |.|+|.+.|..+.......+.+.
T Consensus       156 ~~v~W~~~~~~~~~~~~~~~~~~g~~~~~-----s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          156 VTVTWNSGSLSSGVHTFPAVLQSDLYTLS-----SSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             CEEEEGGGTBCTTEEECCCEEETTEEEEE-----EEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             eEEEEEeCCeecceEeCCccccCCeEEEE-----EEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence             899999886321        11222221     378899999889 99999999987766655555444

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.42  E-value=5.5e-13  Score=108.27  Aligned_cols=105  Identities=20%  Similarity=0.183  Sum_probs=81.5

Q ss_pred             CCEEccCCCCCC-CCCCCCEEEEecCCeEEEEecCCCC-CCCCcceeEEEEEeeCCC-C---ce----EeEeecCCccEE
Q psy12426        399 SPITAKDPFGRP-DRPGQPTVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYG-P---WE----KACIVPANITAT  468 (616)
Q Consensus       399 ~~~~~~~~~~~p-~~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~i~~~~~~~-~---~~----~~~~~~~~~~~~  468 (616)
                      ..+.+.+....| .+|.++++..++.+++.|+|.+|.. ..++.|.+|.|+|+..+. .   |.    ...........+
T Consensus         3 ~~v~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1uen_A            3 SGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHG   82 (125)
T ss_dssp             CCCCCCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEE
T ss_pred             ccEEEECCCCCCCCCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEecCCccEE
Confidence            345556666667 6888999999999999999998742 234469999999987764 2   21    233445678899


Q ss_pred             EcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEe
Q psy12426        469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC  503 (616)
Q Consensus       469 ~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~  503 (616)
                      +|.+|.|++.|.|+|+|+|..|.|++|....+.|.
T Consensus        83 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  117 (125)
T 1uen_A           83 MLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTP  117 (125)
T ss_dssp             EEESCCSSCEEEEEEEEEESSCEEEECCCEEEECC
T ss_pred             EeCCCCCCCEEEEEEEEecCCCCCCCCCCEEEECC
Confidence            99999999999999999999999998876554443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.41  E-value=3.8e-12  Score=114.32  Aligned_cols=169  Identities=18%  Similarity=0.265  Sum_probs=120.4

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeec-ccCcEEEEec-CCceEEEecCCCC-CCcEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII-SKDRFKIVND-DKSTKLKVFDSKR-GDSGIYTLA  290 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~-~~~~~~~~~~-~~~~~l~i~~l~~-~~~g~y~c~  290 (616)
                      .+|.|. ..+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+... ++...|.|.++.. .|.|.|+|.
T Consensus         5 ~pP~~~-~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            5 HPPEII-RKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             CCCEEE-ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCCEEE-cCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence            467664 44677889999999999999999999999999999886 4556665443 4447999999999 999999999


Q ss_pred             EEcCCCC-ceeeEEEEEecCCCCCCC-------CccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC------CCC
Q psy12426        291 VKNSWGT-DKGTAKVTVLDIPSPPEG-------PLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME------TGR  356 (616)
Q Consensus       291 a~n~~g~-~~~~~~l~v~~~p~~p~~-------~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~------~~~  356 (616)
                      +.|..|. ......+.+...+..+..       +.......+..+.|.|......    ...  +.|...+      ...
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p----~p~--i~W~~~~~~~~~~~~~  157 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNP----TPN--IYWIKNQTKVDMSNPR  157 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSS----CCE--EEEEETTEECCTTSTT
T ss_pred             EEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCC----CCe--EEEEECCeEcccCCCe
Confidence            9999888 677888888766433221       1112334577888999863321    122  2232211      111


Q ss_pred             EEEccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        357 WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       357 ~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ..    .....+.|.++...+.+.|+|.|.|..|...
T Consensus       158 ~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~  190 (212)
T 2yd1_A          158 YS----LKDGFLQIENSREEDQGKYECVAENSMGTEH  190 (212)
T ss_dssp             EE----EETTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EE----ccCCeEEEccCChhhCEEEEEEeecCCCcee
Confidence            11    1134789999999999999999999998753

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.41  E-value=1e-12  Score=119.46  Aligned_cols=126  Identities=15%  Similarity=0.072  Sum_probs=79.2

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCC-----C--CCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeee
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGP-----G--EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE  243 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~-----~--~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~  243 (616)
                      ..|.|.+++.+|.|.|.|.+.|..|.     .  .... ...+.+.. ...+|.+....+. ..+..|+.+.|.|.+.+.
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~-~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~~~l~C~~~g~  157 (228)
T 3bae_H           80 VFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQ-GTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGY  157 (228)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECC-CEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEE
T ss_pred             EEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCC-cEEEEecCCCCCCCEEEEeccc-ccccCCCCEEEEEEEccE
Confidence            47999999999999999999987641     0  0111 11233332 2245655433322 235789999999999987


Q ss_pred             -cCc-eeEEEECCeeecccCcEEEEecC---CceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        244 -PIP-TKEWLCNDITIISKDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       244 -p~~-~~~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                       |.+ .+.|++++..+.......+...+   ....|.|.....++ |.|+|.|.|..|....
T Consensus       158 ~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~  218 (228)
T 3bae_H          158 FPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKV  218 (228)
T ss_dssp             BSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             eCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCE
Confidence             777 99999988653211111111111   12368888888766 9999999998776543

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=1.2e-12  Score=102.68  Aligned_cols=93  Identities=30%  Similarity=0.411  Sum_probs=75.5

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      ...|++|.++.+..++.+++.|+|.++   .+..+.+|.|+|+..+.  .|....  ......++|.+|.|++.|.|+|+
T Consensus         5 ~~~P~~P~~~~~~~~~~~sv~l~W~~~---~~~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~   79 (106)
T 2dju_A            5 SSGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYRAAGTEGPFQEVD--GVATTRYSIGGLSPFSEYAFRVL   79 (106)
T ss_dssp             CCSCCCCEEEEEEEEETTEEEEEEECC---CSSCCSEEEEEEEETTCCSCCCCBC--CCCSSEEEEESCCTTCEEEEEEE
T ss_pred             CcCCcCCCCcEEEeccCCEEEEEEcCC---CCCCceEEEEEEEECCCCCCeEEcc--CCCccEEEEeCCCCCcEEEEEEE
Confidence            367889999999999999999999976   24569999999988765  454432  24577899999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCEEec
Q psy12426        485 AVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~~~~~  504 (616)
                      |+|..|.|++|......|..
T Consensus        80 A~n~~G~~~~S~~~~~~T~~   99 (106)
T 2dju_A           80 AVNSIGRGPPSEAVRARTGE   99 (106)
T ss_dssp             EECSSCBCCCCCCEEEECCC
T ss_pred             EEeCCccCCCcccEEeEcCC
Confidence            99999999988766544443

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.41  E-value=1.1e-12  Score=103.48  Aligned_cols=97  Identities=16%  Similarity=0.119  Sum_probs=75.5

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCC---cceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS---PISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~---~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      .+|.+|.++++..++.++|.|+|.+|...++.   .+.+|.|+|+.... .+. ..........++|.+|+|+|.|.|+|
T Consensus         7 ~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~~~~~~~~Y~v~y~~~~~~~~~-~~~~~~~~~~~~i~gL~P~T~Y~f~V   85 (113)
T 1x5j_A            7 GPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTK-YKNANATTLSYLVTGLKPNTLYEFSV   85 (113)
T ss_dssp             CCCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCC-CEECCBCSSEEEEESCCTTCEECCEE
T ss_pred             CCCCCCcceEEEEecCCEEEEEecCCCCccccccCcCceEEEEEEECCCCCeE-EEEEecCcCEEEeCCCCCCcEEEEEE
Confidence            57888999999999999999999987654331   24499999987432 222 22234557899999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCEEecc
Q psy12426        484 IAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      +|+|..|.|++|......|...
T Consensus        86 ~A~~~~G~g~~S~~v~~~T~~~  107 (113)
T 1x5j_A           86 MVTKGRRSSTWSMTAHGTTFEL  107 (113)
T ss_dssp             EEECSSCBCCCCCCCCEECCCS
T ss_pred             EEecCCccCCCcccEEeeccCC
Confidence            9999999999998776655443

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.41  E-value=6.1e-12  Score=111.48  Aligned_cols=174  Identities=18%  Similarity=0.277  Sum_probs=123.6

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.+ ...+.++.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.+.|
T Consensus         6 ~~P~~-~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            6 EAPGI-RKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             EEEEE-EECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCcc-cccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            34555 34456789999999999999999999999999999999888888888877778999999999999999999999


Q ss_pred             CCCCceeeEEEEEecCCCCCCC---CccceeecCCeEEEEEeCCCCCCCCceEEEEEEEE--eC-CCCCEEEccccccce
Q psy12426        294 SWGTDKGTAKVTVLDIPSPPEG---PLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKM--DM-ETGRWVPMGDVSGTY  367 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~~p~~p~~---~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~--~~-~~~~~~~~~~~~~~~  367 (616)
                      ..|.......+.+...|.....   +.......+..+.|.|......    ...+.+...  .. ...............
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p----~p~v~W~~~~~~~~~~~~~~~~~~~~~~~  160 (197)
T 3lcy_A           85 EVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRP----VPAMTWFHGQKLLQNSENITIENTEHYTH  160 (197)
T ss_dssp             SSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEES----CCEEEEEETTEECCCCSSEEEEECSSEEE
T ss_pred             CCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeee----CCeeEEeECCEECCCCCceEEEEcCCEEE
Confidence            9888877788877665543221   1223445677888998853221    112222211  11 111111111222356


Q ss_pred             EEeccccC-CCeEEEEEEEEecCcCC
Q psy12426        368 TRAENLIE-GHDYNFRVKAVNKIGES  392 (616)
Q Consensus       368 ~~i~~L~~-~~~y~~~v~a~n~~g~~  392 (616)
                      +.|.++.. .+.+.|+|.|.|..|..
T Consensus       161 L~i~~~~~~~d~G~Y~C~a~n~~g~~  186 (197)
T 3lcy_A          161 LVMKNVQRKTHAGKYKVQLSNVFGTV  186 (197)
T ss_dssp             EEESSCCHHHHCEEEEEEEECSSCEE
T ss_pred             EEEccccchhhCceEEEEEEcCcCce
Confidence            88888874 67899999999998864

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.40  E-value=5.4e-13  Score=122.02  Aligned_cols=124  Identities=9%  Similarity=-0.003  Sum_probs=80.9

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCC--CCCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeeecC--c
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGP--GEPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPI--P  246 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~--~~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~--~  246 (616)
                      ..|.|.+++.+|.|.|+|.|.|..+.  .......  +.+.. ...+|.+....+.. .+..|+.+.|.|.+.+.++  +
T Consensus        91 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~--l~V~~~~~~~p~v~~~~~~~-~~~~g~~v~L~C~~~g~~p~~~  167 (234)
T 2j6e_L           91 ASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTK--LTVLGQPKAAPSVTLFPPSS-EELQANKATLVCLISDFFPGAV  167 (234)
T ss_dssp             EEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBC--CCBCCCCCCCCCCCEECCCH-HHHTTSCCCEEECCCBCSSCCC
T ss_pred             EEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEE--EEEecCCCCCCcccccCCCh-hHhcCCceEEEEEEEEEcCCce
Confidence            37999999999999999999998761  1111111  22211 12455553222221 2235889999999998644  3


Q ss_pred             eeEEEECCeeecccCcEE-EE--ecC---CceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        247 TKEWLCNDITIISKDRFK-IV--NDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       247 ~~~W~~~~~~~~~~~~~~-~~--~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      .+.|++++..+..+.... ..  .++   ....|.|..+...|.|.|+|.|.|..+..
T Consensus       168 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  225 (234)
T 2j6e_L          168 TVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  225 (234)
T ss_dssp             EEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred             EEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence            899999998875432110 00  111   12478899999999999999999976553

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.40  E-value=1.4e-11  Score=110.64  Aligned_cols=173  Identities=18%  Similarity=0.170  Sum_probs=119.3

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEe-cCCceEEEecCCC-CCCcEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN-DDKSTKLKVFDSK-RGDSGIYTLAV  291 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~l~i~~l~-~~~~g~y~c~a  291 (616)
                      .+|.|. ..+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.......... .+....|.|.++. ..|.|.|+|.|
T Consensus         5 ~~P~~~-~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            5 TPPRFT-RTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             EEEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCeEE-eCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            456664 44567889999999999999999999999999999886554333332 2345689999994 99999999999


Q ss_pred             EcCCCCceeeEEEEEecCCCC----CC---CCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC--------CC
Q psy12426        292 KNSWGTDKGTAKVTVLDIPSP----PE---GPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET--------GR  356 (616)
Q Consensus       292 ~n~~g~~~~~~~l~v~~~p~~----p~---~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~--------~~  356 (616)
                      .|..|.....+.+.+...+..    |.   .+.......+..+.|.|.....    +...  +.|...+.        ..
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~----p~p~--v~W~~~g~~l~~~~~~~~  157 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGN----PDPE--ITWFKDFLPVDTSNNNGR  157 (212)
T ss_dssp             EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECS----SCCE--EEEEETTEEC------CC
T ss_pred             EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCC----CCCe--EEEEECCccccCcCCCce
Confidence            999988877888888764322    11   1111233456789999986432    1122  22322111        11


Q ss_pred             EEEccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        357 WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       357 ~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ...........+.|.++...+.+.|+|.|.|..|...
T Consensus       158 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  194 (212)
T 2yd6_A          158 IKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRY  194 (212)
T ss_dssp             EEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccc
Confidence            1111112346789999999999999999999999754

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.40  E-value=6.9e-13  Score=104.25  Aligned_cols=89  Identities=22%  Similarity=0.308  Sum_probs=74.0

Q ss_pred             CCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEE
Q psy12426        405 DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       405 ~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      +....|.+|. +.+...+.+++.|+|.+|.. .++.|.+|.|+|+..+. .|... ........++|.+|.|++.|.|+|
T Consensus         3 T~~~~P~~p~-~~v~~~~~~sv~l~W~~p~~-~~g~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V   79 (107)
T 2dn7_A            3 SGSSGPGRPT-MMISTTAMNTALLQWHPPKE-LPGELLGYRLQYCRADEARPNTI-DFGKDDQHFTVTGLHKGTTYIFRL   79 (107)
T ss_dssp             TCCCCCCCCE-EEEEECSTTEEEEEEECCSS-CSSCCCEEEEEEEETTCSSCEEE-EEETTCCEEEEECCCTTCEEEEEE
T ss_pred             CCCCCCCCCc-EeEEecCCCEEEEEECCCCC-CCCceeEEEEEEEECCCCCCEEE-EeCCCccEEEeCCCCCCCEEEEEE
Confidence            3456788777 77777799999999998764 44469999999998776 66654 445667899999999999999999


Q ss_pred             EEEcCCCCCCCCC
Q psy12426        484 IAVNKGGPGEPSK  496 (616)
Q Consensus       484 ~a~n~~G~g~~s~  496 (616)
                      +|+|..|.|+++.
T Consensus        80 ~A~n~~G~g~~s~   92 (107)
T 2dn7_A           80 AAKNRAGLGEEFE   92 (107)
T ss_dssp             EEEETTEEEEEEE
T ss_pred             EEEcCCcccCCee
Confidence            9999999999887

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene}

Probab=99.40  E-value=1.3e-12  Score=100.12  Aligned_cols=86  Identities=19%  Similarity=0.185  Sum_probs=71.9

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      ..+++|.++++..++.+++.|+|.+|.    +.+.+|.|.|+..++ .+.....++++...++|.+|.|++.|.|+|+|.
T Consensus         3 t~~~~P~~l~v~~~t~~Si~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~v~V~A~   78 (97)
T 3qht_C            3 SVSSVPTKLEVVAATPTSLLISWDASS----SSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVYAY   78 (97)
T ss_dssp             --CCSSSSCEEEEEETTEEEEECCCCC----SSCCEEEEEEEESSSCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCCceEEEecCCCEEEEEEeCCC----CCCCEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            467899999999999999999999763    269999999998765 334445567778999999999999999999999


Q ss_pred             cCCCCCCCCCC
Q psy12426        487 NKGGPGEPSKA  497 (616)
Q Consensus       487 n~~G~g~~s~~  497 (616)
                      |..|.|+.+..
T Consensus        79 ~~~G~gp~ss~   89 (97)
T 3qht_C           79 YSYYDLYYSYS   89 (97)
T ss_dssp             EEETTEEEECS
T ss_pred             eCCccCCCCCC
Confidence            99999976654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.40  E-value=5.2e-12  Score=115.86  Aligned_cols=133  Identities=11%  Similarity=-0.006  Sum_probs=81.3

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCC-----CCCCCCCCEEeccccC----CCceeccCCcceEEEcCCeEEEEEEEe
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPG-----EPSDPTAPHIARAKKV----SPYINRDQLSDIKVRAGSNFEFDINVI  241 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~-----~~s~~~~~~~~~~~~~----~P~~~~~~~~~~~v~~g~~~~l~c~~~  241 (616)
                      ...|.|.+++.+|.|.|.|.+.+..+..     .... ...+.+.....    +|......+....+..|+.+.|.|.+.
T Consensus        79 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~-~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~  157 (242)
T 1hxm_B           79 TSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGP-GTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLE  157 (242)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECC-CEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEE
T ss_pred             EEEEEECCCCcccCEEEEEeeecCCccccccceeEcC-cEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEe
Confidence            3479999999999999999998863110     0111 11233332111    333222223333355699999999999


Q ss_pred             ee-cC-ceeEEEECCe-eecccCc-EEEEecCC---ceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        242 GE-PI-PTKEWLCNDI-TIISKDR-FKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       242 ~~-p~-~~~~W~~~~~-~~~~~~~-~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +. |. +.+.|++++. .+..... .....++.   ...|.|..... + |.|+|.|.|..+.......+.+
T Consensus       158 g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          158 KFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             eEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            87 54 7999999987 4432210 01111111   13688877664 4 9999999998887766665554

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.39  E-value=1.1e-12  Score=104.46  Aligned_cols=86  Identities=16%  Similarity=0.183  Sum_probs=72.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|. ..++++.+.+|+.+.|.|.+.|+|.|.|+|+|++..+...++|....                           
T Consensus         7 pp~i~-~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~---------------------------   58 (114)
T 2cqv_A            7 GPQII-QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN---------------------------   58 (114)
T ss_dssp             CCEES-CCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE---------------------------
T ss_pred             CCEEE-eCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEE---------------------------
Confidence            57777 46899999999999999999999999999999999988666665442                           


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                       ......|.|.++...|.|.|.|.|.|..|.....
T Consensus        59 -~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   92 (114)
T 2cqv_A           59 -SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQ   92 (114)
T ss_dssp             -CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECC
T ss_pred             -cCCEEEEEECCCChhcCEEEEEEEEECCCcEEEE
Confidence             1124579999999999999999999999865544

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1e-12  Score=102.97  Aligned_cols=92  Identities=22%  Similarity=0.305  Sum_probs=75.7

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      ...|++|.++++..++.+++.|+|.+|...++ .|.+|.|+|+..+. .|.... .  ....++|.+|.|++.|.|+|+|
T Consensus         5 ~~~P~~P~~l~~~~~~~~si~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~-~--~~~~~~i~~L~p~t~Y~~~V~A   80 (106)
T 2ed8_A            5 SSGPGPVENLQAVSTSPTSILITWEPPAYANG-PVQGYRLFCTEVSTGKEQNIE-V--DGLSYKLEGLKKFTEYSLRFLA   80 (106)
T ss_dssp             CCCCCCCEEEEEECSSTTEEEEEEECCSSCSS-CCCEEEEEEEETTTCCEEEEE-E--CSSCEEEESCCTTCEEEEEEEE
T ss_pred             CCCCcCCceeEEEecCCCEEEEEECCCCCCCC-CeeEEEEEEEECCCCceEEEe-C--CccEEEECCCCCCCEEEEEEEE
Confidence            46788999999999999999999998865444 69999999998776 554432 2  3689999999999999999999


Q ss_pred             EcCCCCCCCCCCCCCEE
Q psy12426        486 VNKGGPGEPSKASAPVT  502 (616)
Q Consensus       486 ~n~~G~g~~s~~~~~~~  502 (616)
                      .|..|.|++|....+.|
T Consensus        81 ~n~~G~g~~S~~~~~~T   97 (106)
T 2ed8_A           81 YNRYGPGVSTDDITVVT   97 (106)
T ss_dssp             ECSSCEEEECCCEEEEC
T ss_pred             EeCCccCCCcCCEEEEc
Confidence            99999999887654444

>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A

Probab=99.38  E-value=3.5e-12  Score=115.31  Aligned_cols=168  Identities=16%  Similarity=0.130  Sum_probs=113.1

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc--------ccccceEEe--ccccCCCeEEE
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG--------DVSGTYTRA--ENLIEGHDYNF  381 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~--------~~~~~~~~i--~~L~~~~~y~~  381 (616)
                      .|.+ +.+.......+.++|+++... +.....|.+.++..+ ..|..+.        ......+.+  .++..+..|.|
T Consensus        23 ~P~n-l~C~~~~~~~l~C~W~~~~~~-~~~~~~y~l~y~~~~-~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~~~y~~   99 (227)
T 1eer_B           23 GPEE-LLCFTERLEDLVCFWEEAASA-GVGPGQYSFSYQLED-EPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLEL   99 (227)
T ss_dssp             STTS-CEEEBSSSSCCEEEEEESCCS-SCCTTSEEEEEEETT-SCCEEECEEEEEETTTEEEEEEECCGGGCCBSSCEEE
T ss_pred             CCcC-CeEECCCCCEEEEEecCCCCC-CCCCccEEEEEEcCC-CCceeccceeccCCCCCceEEEEeCCCcceeeEEEEE
Confidence            3555 666666778899999976543 224567888887653 2243332        112223333  46677889999


Q ss_pred             EEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEec-CCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeE
Q psy12426        382 RVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWG-KDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKAC  459 (616)
Q Consensus       382 ~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~-~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~  459 (616)
                      +|.|.|..+  ..   ...+.+ .....|++|.++++...+ ...+.|+|.+|.......+..|+|+|+..++ .|....
T Consensus       100 ~V~a~~~~~--~~---~~~~~~-~~~v~p~pP~~l~~~~~~~~~~l~v~W~~P~~~~~~~~l~Yev~y~~~~~~~w~~~~  173 (227)
T 1eer_B          100 RVTAASGAP--RY---HRVIHI-NEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRV  173 (227)
T ss_dssp             EEEETTSCE--EE---EEEECG-GGSEECCCCEEEEEEECSSTTCEEEEEECCSSCSCGGGEEEEEEEECCSSSCCCCEE
T ss_pred             EEEecCCCc--cE---EEEEEe-eeeEccCcCcceEEEEcCCCCeEEEEEcCCCCcccccceEEEEEEEcCCCCCcEEEE
Confidence            999865332  11   111111 122468899999988764 7899999998764322237899999998765 576533


Q ss_pred             eecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        460 IVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       460 ~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      ........+.|.+|.|++.|.|+|+|...
T Consensus       174 ~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~  202 (227)
T 1eer_B          174 EILEGRTECVLSNLRGRTRYTFAVRARMA  202 (227)
T ss_dssp             EECTTCCEEEECCCCSSCEEEEEEEEEEC
T ss_pred             EEecCceEEEEcccCCCCeEEEEEEEeEC
Confidence            44455789999999999999999999964

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.38  E-value=1.4e-12  Score=100.73  Aligned_cols=88  Identities=18%  Similarity=0.336  Sum_probs=70.3

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCC-CCCCcceeEEEEEeeCCC----CceEeEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYG----PWEKACIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~i~~~~~~~----~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      ..+|.++.+..++.+++.|+|.+|.. ..++.|.+|.|.|+..++    .|... .+.+....+.|.+|.|++.|.|+|+
T Consensus         5 ~~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~-~v~~~~~~~~l~~L~p~t~Y~v~V~   83 (102)
T 3n1f_C            5 ITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRD-VVEGSKQWHMIGHLQPETSYDIKMQ   83 (102)
T ss_dssp             CSCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEE-EEETTCSEEEECSCCTTCEEEEEEE
T ss_pred             CCCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEE-EEcCCceEEECCCCCCCCEEEEEEE
Confidence            35677888889999999999998753 345579999999998764    35443 4445677899999999999999999


Q ss_pred             EEcCCCCCCCCCCC
Q psy12426        485 AVNKGGPGEPSKAS  498 (616)
Q Consensus       485 a~n~~G~g~~s~~~  498 (616)
                      |.|..|.|++|...
T Consensus        84 A~n~~G~G~~S~~~   97 (102)
T 3n1f_C           84 CFNEGGESEFSNVM   97 (102)
T ss_dssp             EEETTEECCCCCCE
T ss_pred             EECCCcCCCCCCCE
Confidence            99999999998753

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.38  E-value=4.8e-12  Score=118.25  Aligned_cols=127  Identities=12%  Similarity=0.037  Sum_probs=80.6

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEeeecCc-
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-  246 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~-  246 (616)
                      ...|.|.+++.+|.|.|.|.+.|..+....... ..+.+..   ...+|.+....+....+..|+.+.|.|.+.+.+.+ 
T Consensus        99 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~  177 (268)
T 3pl6_D           99 VSTLKIQRTERGDSAVYLCATSALGDTQYFGPG-TRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  177 (268)
T ss_dssp             SEEEEECSCCGGGCEEEEEEEESSSSSCEECCC-EEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEEEECCCCcccCEEEEEEEecCCCceeeCCc-EEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCC
Confidence            458999999999999999999974322111111 1233322   23356554433444445568999999999997665 


Q ss_pred             -eeEEEECCeeecccCcEEE---E-----ecCC---ceEEEecCCCCCC-cEEEEEEEEcCCCCc
Q psy12426        247 -TKEWLCNDITIISKDRFKI---V-----NDDK---STKLKVFDSKRGD-SGIYTLAVKNSWGTD  298 (616)
Q Consensus       247 -~~~W~~~~~~~~~~~~~~~---~-----~~~~---~~~l~i~~l~~~~-~g~y~c~a~n~~g~~  298 (616)
                       .+.|++++..+..+.+...   .     .++.   ...|.|......| .|.|+|.+.|.....
T Consensus       178 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~  242 (268)
T 3pl6_D          178 VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  242 (268)
T ss_dssp             EEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred             eEEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence             8999999988754321110   0     0110   1356777776666 999999999865433

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A

Probab=99.38  E-value=3.7e-12  Score=114.04  Aligned_cols=147  Identities=16%  Similarity=0.144  Sum_probs=105.2

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEee-cCC--ccEEEcCCCCCCCeEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIV-PAN--ITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~-~~~--~~~~~l~~L~p~t~Y~~~v  483 (616)
                      .+|++|.++.+...+..++.++|.++. +++. ...|.|+|+..+. .|..+... ...  ...+.+.+|.+.+.|.|+|
T Consensus         2 ~pP~~P~nl~c~~~~~~~~~c~W~p~~-~~~~-~~~Y~l~y~~~~~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~V   79 (210)
T 3n06_B            2 LPPGKPEIFKCRSPNKETFTCWWRPGT-DGGL-PTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMV   79 (210)
T ss_dssp             CCCCCCEEEEEEBSSSSCEEEEEECCS-SSCC-CSEEEEEEEETTCCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEEE
T ss_pred             CCCCCCeEeEEEeCCCCeEEEEECCCC-CCCC-CceEEEEEEECCCCccccCCCCCCCCCeEEEeCCCCcccceeEEEEE
Confidence            478899999998889999999999755 4443 4689999997665 66665321 112  2344556799999999999


Q ss_pred             EEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCCC
Q psy12426        484 IAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSKP  563 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~  563 (616)
                      .|.|..|.+.... .   .....                                              ....|++|.++
T Consensus        80 ~A~N~~G~~~s~~-~---~~~~~----------------------------------------------~~v~p~pP~~l  109 (210)
T 3n06_B           80 NATNQMGSSFSDE-L---YVDVT----------------------------------------------YIVQPDPPLEL  109 (210)
T ss_dssp             EEEETTEEEECCC-E---EECGG----------------------------------------------GCBCCCCCEEE
T ss_pred             EEEcCCCCeeCCc-E---EEchh----------------------------------------------heEecCCCceE
Confidence            9999999874221 1   11110                                              01347788888


Q ss_pred             eEEeec----CCcEEEEeeCCCCCC--CC-ceeeeEEEEeecCCCCeEEc
Q psy12426        564 EATDVD----KDHIKIKWQQPISNG--GS-AIKGYEVERRERTSGRWIKI  606 (616)
Q Consensus       564 ~~~~~~----~~~i~l~W~~p~~~~--~~-~i~~Y~i~~~~~~~~~w~~~  606 (616)
                      .+....    .+++.|+|++|....  +| .+.+|+|.|+..++.+|...
T Consensus       110 ~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~~~~~~~  159 (210)
T 3n06_B          110 AVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIH  159 (210)
T ss_dssp             EEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTCSSCEEE
T ss_pred             EEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCCCCCEEE
Confidence            776543    589999999976432  24 47999999999888889764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.38  E-value=2e-11  Score=107.88  Aligned_cols=170  Identities=14%  Similarity=0.104  Sum_probs=114.1

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEe-eecCceeEEEECCeeeccc--CcEEEEecCC-------ceEEEecCCCCCCc
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISK--DRFKIVNDDK-------STKLKVFDSKRGDS  284 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~-~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~-------~~~l~i~~l~~~~~  284 (616)
                      +|.| ...+.+..+.+|+.+.|.|.+. +.|.+.+.|++++..+...  .++.+.....       ...|.|.++...|.
T Consensus         2 ~~~~-~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   80 (195)
T 2c5d_C            2 ESPF-VGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT   80 (195)
T ss_dssp             CCSE-EECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred             CCee-ccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence            4555 3446788999999999999999 9999999999999988755  2344443332       46899999999999


Q ss_pred             EEEEEEEEcCCCCce-eeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcccc
Q psy12426        285 GIYTLAVKNSWGTDK-GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV  363 (616)
Q Consensus       285 g~y~c~a~n~~g~~~-~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~  363 (616)
                      |.|+|.+.|..|... ..+.+.+..+|.....+.......+..+.|.|......  .+ ..+  .|...+...-......
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~p-~~v--~W~~~~~~~~~~~~~~  155 (195)
T 2c5d_C           81 GQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPP--EP-VDL--LWLQDAVPLATAPGHG  155 (195)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSS--CC-CEE--EEEESSCBSSSSTTSS
T ss_pred             cEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCC--CC-CEE--EEEECCEeccCCCCcC
Confidence            999999999877543 34778887766433222233445677899999863322  11 122  2222211100000002


Q ss_pred             ccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        364 SGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       364 ~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      ....+.|.++.  +.+.|+|.|.|..|..
T Consensus       156 ~~~~L~i~~~~--d~G~Y~C~a~N~~g~~  182 (195)
T 2c5d_C          156 PQRSLHVPGLN--KTSSFSCEAHNAKGVT  182 (195)
T ss_dssp             CCEEEEECCCS--SCEEEEEEEEETTEEE
T ss_pred             CCCeEEEcccc--cCceEEEEEEcCCCce
Confidence            45678888887  4689999999998864

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens}

Probab=99.38  E-value=1.5e-12  Score=100.27  Aligned_cols=84  Identities=23%  Similarity=0.320  Sum_probs=70.0

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      +|++|.++.+..++.+++.|+|.+|..    .|.+|.|+|+..+. .+.....+.....+++|.+|.|++.|.|+|+|.|
T Consensus         1 ~p~~P~~l~~~~~~~~sv~lsW~pP~~----~i~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~A~n   76 (100)
T 3b83_A            1 MLQPPFNIKVTNITLTTAVVTWQPPIL----PIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARN   76 (100)
T ss_dssp             CCCCCEEEEEESCCSSCEEEEEECCSS----CCSEEEEEEEESSCTTTCEEEEECTTEEEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCccCCccEEEEecCCEEEEEEcCCcc----cCCEEEEEEEECCCCCCceEEEECCcceEEEECCCCCCCEEEEEEEEEe
Confidence            477899999999999999999998753    59999999987663 2222334567789999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy12426        488 KGGPGEPSK  496 (616)
Q Consensus       488 ~~G~g~~s~  496 (616)
                      ..|.|+++.
T Consensus        77 ~~g~s~p~~   85 (100)
T 3b83_A           77 GQQYSPPVS   85 (100)
T ss_dssp             TTEECCCEE
T ss_pred             CCCCCCCEE
Confidence            999988765

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.38  E-value=4.1e-12  Score=99.12  Aligned_cols=92  Identities=16%  Similarity=0.195  Sum_probs=72.7

Q ss_pred             CCCCCCCCCCCCEEEEecCCeEEEEe--cCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEE
Q psy12426        405 DPFGRPDRPGQPTVTDWGKDHVDLEW--TPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       405 ~~~~~p~~p~~~~~~~~~~~~v~l~W--~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      +...+|++|.++++..++.+++.|+|  .+|...++ . .+|.|+|+..... ......   ...++|.+|.|++.|.|+
T Consensus         5 T~~~~P~~p~~l~~~~~~~~sv~l~W~~~~P~~~ng-~-~~Y~v~y~~~~~~-~~~~~~---~~~~~i~~L~p~t~Y~f~   78 (107)
T 1x5a_A            5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGG-N-LSYELHVLNQDEE-WHQMVL---EPRVLLTKLQPDTTYIVR   78 (107)
T ss_dssp             TTTCCCCCSCCCCEEEEETTEEEEECCCCCSSCCSS-C-CEEEEEEECSSCE-EEEEES---SSEEEEESCCSSCEEEEE
T ss_pred             CCCCCCCCCCceEEEecCCCEEEEEECCCCCCCCCC-c-eEEEEEEEeCCCC-ceEEEe---cceEEECCCCCCCEEEEE
Confidence            45678999999999999999999999  87766555 4 8899999876221 111122   223999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCEE
Q psy12426        483 VIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~~~~  502 (616)
                      |+|.|..|.|++|....+.|
T Consensus        79 V~A~~~~G~g~~S~~~~~~T   98 (107)
T 1x5a_A           79 VRTLTPLGPGPFSPDHEFRT   98 (107)
T ss_dssp             EEEECSSSCCCCCCCEEEEC
T ss_pred             EEEECCCccCCCCCCEEEEE
Confidence            99999999999998765444

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=3e-12  Score=101.89  Aligned_cols=93  Identities=26%  Similarity=0.367  Sum_probs=75.4

Q ss_pred             CCCCCCCCCEEEEe--cCCeEEEEecCCCCCCCCcceeEEEEEeeCCC----CceEeEeecCCccEEEcCCCCCCCeEEE
Q psy12426        408 GRPDRPGQPTVTDW--GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWEKACIVPANITATSVPDLKEGEEYEF  481 (616)
Q Consensus       408 ~~p~~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~----~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  481 (616)
                      .+|.+|.++++...  +.+++.|+|.+|...++ .|.+|.|+|+..+.    .|... ........++|.+|.|++.|.|
T Consensus         7 ~P~~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~   84 (114)
T 2ede_A            7 GPTSAPKDLTVITREGKPRAVIVSWQPPLEANG-KITAYILFYTLDKNIPIDDWIME-TISGDRLTHQIMDLNLDTMYYF   84 (114)
T ss_dssp             CCCSCCEEEEEEECSSCSSCEEEEEECCSSCSS-CCSEEEEEEESCSSSCTTTSEEE-EEETTCCEEEECSCCSSCEEEE
T ss_pred             CCCCCCcceEEEEccCCCCEEEEEECCCCCCCC-ceeEEEEEEEeCCCCCccceEEE-EECCCceEEEEcCCCCCCEEEE
Confidence            35578889999887  78999999998865544 69999999987543    45433 4456788999999999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCCEE
Q psy12426        482 RVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       482 ~v~a~n~~G~g~~s~~~~~~~  502 (616)
                      +|+|.|..|.|++|....+.|
T Consensus        85 ~V~A~n~~G~g~~S~~~~~~T  105 (114)
T 2ede_A           85 RIQARNSKGVGPLSDPILFRT  105 (114)
T ss_dssp             EEEEECSSCBCCCCCCEEEEC
T ss_pred             EEEEEeCCcCcCCcccEEEEe
Confidence            999999999999987655433

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.38  E-value=1.5e-11  Score=115.55  Aligned_cols=127  Identities=11%  Similarity=0.020  Sum_probs=79.0

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCC----CCCCCCCEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEeee
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGE----PSDPTAPHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE  243 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~----~s~~~~~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~  243 (616)
                      ...|.|.+++.+|.|.|.|.+.|..|...    ... ...+.+..   ...+|.+....+....+..|+.+.|.|.+.+.
T Consensus        99 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~-~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~  177 (279)
T 2wbj_D           99 LSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGP-GTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF  177 (279)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECC-CEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEE
T ss_pred             EEEEEEccCCccCCEEEEEEEcccccCCccceeeCC-CEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeE
Confidence            34799999999999999999999543110    011 11233322   12456554333333334468899999999987


Q ss_pred             -cC-ceeEEEECCeeecccCcEE---EE----ecCC----ceEEEecCCCCC-CcEEEEEEEEcCCCCc
Q psy12426        244 -PI-PTKEWLCNDITIISKDRFK---IV----NDDK----STKLKVFDSKRG-DSGIYTLAVKNSWGTD  298 (616)
Q Consensus       244 -p~-~~~~W~~~~~~~~~~~~~~---~~----~~~~----~~~l~i~~l~~~-~~g~y~c~a~n~~g~~  298 (616)
                       |. +.+.|++++..+.......   ..    ..+.    .+.|.|...... +.+.|+|.|.|.....
T Consensus       178 ~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~  246 (279)
T 2wbj_D          178 YPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  246 (279)
T ss_dssp             BSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred             cCCCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence             43 6999999998875432111   00    0111    135777777665 4678999999965443

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=2.1e-12  Score=103.60  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=72.6

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCC---cceeEEEEEeeCCC---CceEeEeecCCccEEEcCCCCCCCeEE
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS---PISQYIIEKKPKYG---PWEKACIVPANITATSVPDLKEGEEYE  480 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~---~i~~Y~i~~~~~~~---~~~~~~~~~~~~~~~~l~~L~p~t~Y~  480 (616)
                      ..+|.+|.++++..++.++|.|+|.+|...++.   .+.+|+|+|+..+.   .|..   +......++|.+|+|++.|.
T Consensus        16 ~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~i~~~~~~Y~v~y~~~~~~~~~~~~---~~~~~~~~~v~gL~P~T~Y~   92 (123)
T 2edd_A           16 STPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKS---EDTTSLSYTATGLKPNTMYE   92 (123)
T ss_dssp             CCSSCCCEEEEEEEEETTEEEEEEECSSSCSSCCCSCCCCEEEEEEETTCTTCCCCC---EEESSSEEEEESCCTTCEEE
T ss_pred             CCCCCCCcceEEEEcCCCeEEEEecCCCCCcccccCcCceEEEEEEECCCCCccEEE---EeCCceEEEecCCCCCCEEE
Confidence            467888999999999999999999976544331   23499999988643   3332   22347899999999999999


Q ss_pred             EEEEEEcCCCCCCCCCCCCCEE
Q psy12426        481 FRVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       481 ~~v~a~n~~G~g~~s~~~~~~~  502 (616)
                      |+|+|+|..|.|++|......|
T Consensus        93 f~V~A~n~~g~g~~S~~v~~~T  114 (123)
T 2edd_A           93 FSVMVTKNRRSSTWSMTAHATT  114 (123)
T ss_dssp             EEEEECCSSSCCCCCCCEEEEC
T ss_pred             EEEEEeCCCcccCCCCCEEEEc
Confidence            9999999999999988654443

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.37  E-value=4.9e-13  Score=100.48  Aligned_cols=79  Identities=10%  Similarity=0.050  Sum_probs=62.9

Q ss_pred             CCccCCCCCCceE--ecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          1 APHIDRRHLGDIK--LSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         1 ~P~i~~~~~~~~~--v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      ||.|. .+++++.  +.+|++|.|.|.+.| |.|.|+|+|||+.|..+..|.....+                       
T Consensus         4 P~~i~-~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~-----------------------   58 (91)
T 2lvc_A            4 PVHIV-DPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEG-----------------------   58 (91)
T ss_dssp             CCCCC-BCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEET-----------------------
T ss_pred             CcEEe-ccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecC-----------------------
Confidence            45554 6677655  468999999999876 88999999999999877777665322                       


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~  109 (616)
                           ...+|.|.++.+.|+|.|.|.|.|..
T Consensus        59 -----~~~~L~I~~v~~~D~G~Y~C~a~n~~   84 (91)
T 2lvc_A           59 -----PHRRLVLPATQPSDGGEFQCVAGDEC   84 (91)
T ss_dssp             -----TEEEEEESSCCGGGCSEEEEECSSCE
T ss_pred             -----CeEEEEeCCCChhhcEEEEEEEcceE
Confidence                 24579999999999999999997643

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.37  E-value=4.9e-12  Score=116.46  Aligned_cols=125  Identities=11%  Similarity=-0.011  Sum_probs=79.0

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCC--CCCCCCCCCEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEeee-c
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGP--GEPSDPTAPHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-P  244 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~--~~~s~~~~~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p  244 (616)
                      ...|.|.+++.+|.|.|.|.+.+....  ...+ ....+.+..   ...+|.+....+....+..|+.+.|.|.+.+. |
T Consensus        75 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p  153 (245)
T 4ei6_B           75 YFTLKIQPTALEDSAVYFCASSFWGAYAEQFFG-PGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  153 (245)
T ss_dssp             CEEEEECSCCGGGCEEEEEEEECSSTTCCCEEC-CCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBS
T ss_pred             eEEEEECCCCHhHCEEEEEEEccCCCcceEEEc-CCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeC
Confidence            448999999999999999999864211  1111 111233322   22456554333444445568999999999985 4


Q ss_pred             Cc-eeEEEECCeeecccCcEEEEe-------cCCc----eEEEecCCCCCC-cEEEEEEEEcCCC
Q psy12426        245 IP-TKEWLCNDITIISKDRFKIVN-------DDKS----TKLKVFDSKRGD-SGIYTLAVKNSWG  296 (616)
Q Consensus       245 ~~-~~~W~~~~~~~~~~~~~~~~~-------~~~~----~~l~i~~l~~~~-~g~y~c~a~n~~g  296 (616)
                      .+ .+.|++++..+....+.....       .++.    ..|.|......| .|.|+|.|.|...
T Consensus       154 ~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l  218 (245)
T 4ei6_B          154 DHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (245)
T ss_dssp             SCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence            44 899999998876432211100       0111    247777777777 8999999998543

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.37  E-value=6.1e-12  Score=113.10  Aligned_cols=125  Identities=13%  Similarity=-0.020  Sum_probs=75.2

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCC-CCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCc-e
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPG-EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-T  247 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~-~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~-~  247 (616)
                      ..|.|.+++.+|.|.|.|.+.|..+.. .... ...+.+.. ...+|.+....+.. .+..|+.+.|.|.+.+. |.+ .
T Consensus        78 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-~~~L~V~~~~~~~P~i~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~  155 (215)
T 1c5d_H           78 VFLKMNSLQTEDTAIYFCTREDGWNYFDYWGP-GTMVTVSSAQTTAPSVYPLAPGC-GDTTSSTVTLGCLVKGYFPEPVT  155 (215)
T ss_dssp             EEEEESSCCGGGCEEEEEEECCSSSCSCCBCC-CEEEEECSSCCBCCCEEEECCCS-SCCCCSSEEEEEEEEEEBSSCCE
T ss_pred             EEEEECCCCcccCEEEEEEEecCCcccceEcC-CEEEEecCCCCCCCeEEeccCCh-hhccCCcEEEEEEEeeeEcCCcE
Confidence            479999999999999999998865321 1111 12233332 23456554322222 24679999999999987 777 9


Q ss_pred             eEEEECCeeecccCcEEEEecCCceEE--EecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        248 KEWLCNDITIISKDRFKIVNDDKSTKL--KVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       248 ~~W~~~~~~~~~~~~~~~~~~~~~~~l--~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      +.|++++..+........... +...+  .+......+ |.|+|.|.|..|....
T Consensus       156 v~W~~~g~~~~~~~~~~~~~~-g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~  208 (215)
T 1c5d_H          156 VTWNSGALSSDVHTFPAVLQS-GLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV  208 (215)
T ss_dssp             EEEGGGTTCCSCCBCCCEEET-TEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred             EEEccCCccCceEecCcccCC-CCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence            999998865421111111111 11111  122333345 9999999998776543

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}

Probab=99.37  E-value=2.6e-11  Score=120.11  Aligned_cols=148  Identities=18%  Similarity=0.212  Sum_probs=107.0

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCC--CCcceeEEEEEeeCCCCceEeEee---cCCccEEEcCCCCCCCeEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDG--GSPISQYIIEKKPKYGPWEKACIV---PANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~--~~~i~~Y~i~~~~~~~~~~~~~~~---~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      .+|++|.++.........+.++|.++...+  |...+.|.|+|+..+. .......   .+....+.+.+|.+.+.|.|+
T Consensus       280 ~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y~~~g~-~~~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~  358 (483)
T 3e0g_A          280 YPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGK-YVRLKRAEAPTNESYQLLFQMLPNQEIYNFT  358 (483)
T ss_dssp             CCCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEETTTCC-EEEECCCSSCSCSCEEEEEECCTTCCCEEEE
T ss_pred             CCCCCCCccEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEEEECCC-CccccCCcccCCCEEEEEEccCCCCcEEEEE
Confidence            467888888888777789999999765432  3347889999986542 1222111   223567899999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCCCCCC
Q psy12426        483 VIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPGKPSK  562 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~  562 (616)
                      |.|.|..|.+. +.    .....                                              .....|+||.+
T Consensus       359 V~A~N~lG~~~-S~----~~~~~----------------------------------------------~~~VkP~PP~n  387 (483)
T 3e0g_A          359 LNAHNPLGRSQ-ST----ILVNI----------------------------------------------TEKVYPHTPTS  387 (483)
T ss_dssp             EEEECSSCEEE-EE----EEECG----------------------------------------------GGGBCCCCCEE
T ss_pred             EEEEeCCCCcc-cc----eEEEe----------------------------------------------ccccCCCCCee
Confidence            99999999876 22    11110                                              00145788888


Q ss_pred             CeEEeecCCcEEEEeeCCCCCCCCceeeeEEEEeecCCC-CeEEccC
Q psy12426        563 PEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSG-RWIKITP  608 (616)
Q Consensus       563 ~~~~~~~~~~i~l~W~~p~~~~~~~i~~Y~i~~~~~~~~-~w~~~~~  608 (616)
                      +++...+.+++.|+|++|.. .++.+..|+|+|+..+.. +|..+..
T Consensus       388 l~v~~~~stsl~LsW~~P~~-~~~~~L~YeVrYr~~~~~~~~~~vsv  433 (483)
T 3e0g_A          388 FKVKDINSTAVKLSWHLPGN-FAKINFLCEIEIKKSNSVQEQRNVTI  433 (483)
T ss_dssp             EEECCSSSSSCCEEEECCSC-CTTSBCCCEEEEECSSSCCCEEECCC
T ss_pred             eEEEEecCCeEEEEECCCCC-CCCceEEEEEEEEECCCCCceEEEEE
Confidence            88887788999999999853 367889999999988765 5776543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.36  E-value=3.9e-11  Score=105.55  Aligned_cols=166  Identities=14%  Similarity=0.175  Sum_probs=114.5

Q ss_pred             CCceeccCCcceEEEc-CCeEEEEEEEeeecC--ceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEE
Q psy12426        215 SPYINRDQLSDIKVRA-GSNFEFDINVIGEPI--PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~-g~~~~l~c~~~~~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      +|.+..  +....+.. |+.+.|.|.+.+.|.  +.+.|++++..+.......     ....|.|.++...|.|.|+|.+
T Consensus         3 ~P~i~~--~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~   75 (190)
T 2wv3_A            3 EPRIVT--SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVY   75 (190)
T ss_dssp             CCEEEE--CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCcccc--cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEE
Confidence            455532  34455666 999999999999987  8999999999876543322     3458999999999999999999


Q ss_pred             EcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeC--------CCCCEEEcccc
Q psy12426        292 KNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM--------ETGRWVPMGDV  363 (616)
Q Consensus       292 ~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~--------~~~~~~~~~~~  363 (616)
                      .|. |.....+.+.+..+|.....+.......+..+.|.|......    ...+.+.....        ...........
T Consensus        76 ~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~  150 (190)
T 2wv3_A           76 HFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP----HPEWMWRKKENGVFEEISNSSGRFFIINKE  150 (190)
T ss_dssp             EET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSS----CCEEEEEEEETTEEEECCCTTSCEEEEECS
T ss_pred             EeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccC----CCceEEEEcCCCceeeeecCCCeEEEecCC
Confidence            999 888888888888776543222233456678899999863322    12222222111        11112221222


Q ss_pred             ccceEEecccc-CCCeEEEEEEEEecCcCC
Q psy12426        364 SGTYTRAENLI-EGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       364 ~~~~~~i~~L~-~~~~y~~~v~a~n~~g~~  392 (616)
                      ....+.|.++. ..+.+.|.|.|.|..|..
T Consensus       151 ~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~  180 (190)
T 2wv3_A          151 NYTELNIVNLQITEDPGEYECNATNSIGSA  180 (190)
T ss_dssp             SEEEEEECSCCTTTSCEEEEEEEECSSCEE
T ss_pred             CeeEEEEEeccccCCCEEEEEEEEecCCcc
Confidence            33478999999 799999999999998864

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.36  E-value=1.6e-11  Score=108.81  Aligned_cols=172  Identities=19%  Similarity=0.200  Sum_probs=119.4

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEe-cCCceEEEecCCCCCCcEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      .+|.|. ..+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+.. .+....|.|.++...|.|.|+|.+
T Consensus         3 ~~P~~~-~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (197)
T 2j8h_A            3 MAPHFK-EELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (197)
T ss_dssp             CCCEEE-ECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred             CCCEEE-EcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEE
Confidence            456663 4457789999999999999999999999999999887643 4555443 455569999999999999999999


Q ss_pred             EcCCCCceeeEEEEEecCCCCCCCC-----ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC-----CCCEEEcc
Q psy12426        292 KNSWGTDKGTAKVTVLDIPSPPEGP-----LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME-----TGRWVPMG  361 (616)
Q Consensus       292 ~n~~g~~~~~~~l~v~~~p~~p~~~-----~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~-----~~~~~~~~  361 (616)
                      .|..|.......+.+..+|.....+     -......+..+.|.|......    ..  .+.|...+     ........
T Consensus        82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p----~p--~i~W~~~~~~~~~~~~~~~~~  155 (197)
T 2j8h_A           82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKP----DP--VITWQKGQDLIDNNGHYQVIV  155 (197)
T ss_dssp             EETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEES----CC--EEEEEESSCEECSSSSCEEEE
T ss_pred             EECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecC----CC--cEEEEECCEEeecCCCEEEEE
Confidence            9998887778888876654322111     113344577788888753221    11  22222211     11111111


Q ss_pred             ccccceEEecc-ccCCCeEEEEEEEEecCcCC
Q psy12426        362 DVSGTYTRAEN-LIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       362 ~~~~~~~~i~~-L~~~~~y~~~v~a~n~~g~~  392 (616)
                      ......+.|.+ +...+.+.|+|.|.|..|..
T Consensus       156 ~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~  187 (197)
T 2j8h_A          156 TRSFTSLVFPNGVERKDAGFYVVCAKNRFGID  187 (197)
T ss_dssp             CSSEEEEECTTCCCGGGCEEEEEEEEETTEEE
T ss_pred             cCCceEEEEeCCCCcccCEeEEEEEEeCCCcE
Confidence            22345788888 99999999999999998864

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.36  E-value=7.9e-13  Score=118.14  Aligned_cols=117  Identities=18%  Similarity=0.114  Sum_probs=63.5

Q ss_pred             eecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEe-ccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cC-ceeEEEE
Q psy12426        176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA-RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PI-PTKEWLC  252 (616)
Q Consensus       176 i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~-~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~-~~~~W~~  252 (616)
                      |......|.|.|+|.|.|..+.....   ..+.. .....+|.+....+....+ .|..+.|.|.+.|. |. +.+.|++
T Consensus        72 i~~~d~~d~g~Y~C~a~n~~~~~~~~---~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k  147 (207)
T 1l6x_A           72 VLHQDWLNGKEYKCKVSNKALPAPIE---KTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWES  147 (207)
T ss_dssp             CCHHHHHTTCCEEEEEECTTSSSCEE---EEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEHHHccCCceEEEEEEcCcCCcceE---EEeccCCCCCcCCEEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEE
Confidence            33333445788888888776542111   01110 0223455543322222112 45679999999985 44 4899999


Q ss_pred             CCeeecccCcEEE--EecCC---ceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        253 NDITIISKDRFKI--VNDDK---STKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       253 ~~~~~~~~~~~~~--~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      ++..+........  ..++.   ...|.|......+.|.|+|.|.|...
T Consensus       148 ~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          148 NGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             TTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence            9988753221111  11121   11334444444568999999999654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.35  E-value=1.3e-12  Score=98.93  Aligned_cols=79  Identities=22%  Similarity=0.294  Sum_probs=64.7

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||+|. .+++++.|.+|+.+.|.|.+.+ |.|.|+|+|||..|..+++|.....                          
T Consensus         5 ~~~~~-~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~--------------------------   56 (93)
T 1waa_A            5 LIEVE-KPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIED--------------------------   56 (93)
T ss_dssp             CCCEE-ECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEE--------------------------
T ss_pred             CcEee-ccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEE--------------------------
Confidence            45565 5699999999999999999987 4578999999999987777755421                          


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~  109 (616)
                        +....|.|.++...|+|.|.|.|.|..
T Consensus        57 --g~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T 1waa_A           57 --GKKHILILHNCQLGMTGEVSFQAANTK   83 (93)
T ss_dssp             --TTEEEEEECSCCGGGCEEEEEEETTEE
T ss_pred             --CCEEEEEECCCChhhCEEEEEEECCCc
Confidence              123579999999999999999998753

>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.35  E-value=3.6e-12  Score=101.29  Aligned_cols=98  Identities=20%  Similarity=0.285  Sum_probs=74.5

Q ss_pred             cCCEEccCCCCCCC-CCCCCEEEEecCCeEEEEecCCCC-CCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCC
Q psy12426        398 QSPITAKDPFGRPD-RPGQPTVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLK  474 (616)
Q Consensus       398 s~~~~~~~~~~~p~-~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~  474 (616)
                      +..+.+.+...+|. +|.++++.. +.+++.|+|++|.. ..++.|.+|+|+|+..+. .+. ..  ......+.+. |.
T Consensus         6 S~~v~~~T~e~~P~~~P~~v~~~~-~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~-~~--~~~~~~~~~~-L~   80 (117)
T 1wj3_A            6 SGTVNVTTKKTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQ-VL--NTNKTSAELV-LP   80 (117)
T ss_dssp             CCCCCCCCSCCCCCCCCCSCBCCE-ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCE-EE--EESSSEEEEE-CC
T ss_pred             CCCEEEEecCCCCCCCCccEEEEE-eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCCe-EE--eCCCcEEEEE-CC
Confidence            45566677777777 567788766 88999999998742 344579999999988765 332 22  2234577888 99


Q ss_pred             CCCeEEEEEEEEcCCCCCCCCCCCCC
Q psy12426        475 EGEEYEFRVIAVNKGGPGEPSKASAP  500 (616)
Q Consensus       475 p~t~Y~~~v~a~n~~G~g~~s~~~~~  500 (616)
                      +++.|.|+|+|+|..|.|++|....+
T Consensus        81 ~~t~Y~~~V~A~n~~G~Gp~S~~v~~  106 (117)
T 1wj3_A           81 IKEDYIIEVKATTDGGDGTSSEQIRI  106 (117)
T ss_dssp             CSSCEEEEEEEEESSCCCCBCCCEEE
T ss_pred             CCCEEEEEEEEECCCccCCCCCCEEE
Confidence            99999999999999999999875543

>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.35  E-value=3.3e-11  Score=106.37  Aligned_cols=176  Identities=17%  Similarity=0.202  Sum_probs=121.3

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEe-----CCCCCEEEcc---ccccceEEecc-ccCCCeEEEE
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMD-----METGRWVPMG---DVSGTYTRAEN-LIEGHDYNFR  382 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~-----~~~~~~~~~~---~~~~~~~~i~~-L~~~~~y~~~  382 (616)
                      +|.+ +.+...... ..|.|+++..  ......|.++|..     .+...|....   ....+.+.|.. +..+..|.+|
T Consensus         9 ~P~n-v~~~s~n~~-~iL~W~p~~~--~~~~~~Y~V~y~~~~~~~~~~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~Y~~R   84 (206)
T 4doh_B            9 APQQ-LSVLSTNMK-HLLMWSPVIA--PGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLR   84 (206)
T ss_dssp             CCCC-CEEEEETTE-EEEECCCCCC--SSSCCEEEEEEEEHHHHHHSTTCCEEEEEEEEESSSEEECTTTCCSSSCEEEE
T ss_pred             CCCe-eEEEEeCCE-EEEEECCCCC--CCCCEEEEEEEEEeccccCCCccceecccccCCCCCEEcCCccccCCCCEEEE
Confidence            3555 666665554 7999997642  2234789999984     3556787643   34567788884 6678899999


Q ss_pred             EEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEee
Q psy12426        383 VKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIV  461 (616)
Q Consensus       383 v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~  461 (616)
                      |+|.+..+.+.++.........  ...+++| .+.+. ....+|.|.|.+|     ..+..|.|.|.+.++ .-......
T Consensus        85 VrA~~~~~~S~w~~~~~f~~~~--~t~i~PP-~v~v~-~~~~~i~V~~~~p-----~~~l~Y~v~y~~~~~~~~~~~~~~  155 (206)
T 4doh_B           85 VRATLGSQTSAWSILKHPFNRQ--STILTRP-GMEIT-KDGFHLVIELEDL-----GPQFEFLVAYWRREPGAEEHVKMV  155 (206)
T ss_dssp             EEEEETTEECCCEECSSCBCGG--GCBCCCC-CEEEE-EETTEEEEEECCC-----CTTCEEEEEEEESSSSCCCEEEEE
T ss_pred             EEEEcCCCccCccccccccchh--hcccCCC-eEEEE-eCCCEEEEEecCC-----CCcEEEEEEEEEcCCCceeEEeEE
Confidence            9999988887765433222111  2334444 46666 5788999999976     247789999988765 22222333


Q ss_pred             cCCccEEEcCCCCCCCeEEEEEEEEcC--CCCCCCCCCCCC
Q psy12426        462 PANITATSVPDLKEGEEYEFRVIAVNK--GGPGEPSKASAP  500 (616)
Q Consensus       462 ~~~~~~~~l~~L~p~t~Y~~~v~a~n~--~G~g~~s~~~~~  500 (616)
                      ......++|.+|.|++.|.|+|+|...  .|.|.+|....+
T Consensus       156 ~~~~~~~~i~~L~p~t~Ycv~Vra~~~~~~~~g~~S~~~C~  196 (206)
T 4doh_B          156 RSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECV  196 (206)
T ss_dssp             CCSSSEEEEEECCSSSCEEEEEEEEEGGGTEECCCCCCEEE
T ss_pred             ccCCeEEEEeCCCCCCcEEEEEEEEecCCCCCCCCCCCEeE
Confidence            344678999999999999999999985  377888875443

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=2.4e-12  Score=101.22  Aligned_cols=92  Identities=26%  Similarity=0.311  Sum_probs=71.1

Q ss_pred             CCCCCCC-CCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        408 GRPDRPG-QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       408 ~~p~~p~-~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      .+|.+|. ++....++.+++.|.|.+|..++ .+|.+|.|+|+..+. .|.....  +....++|.+|.|++.|.|||+|
T Consensus         8 ~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~~-~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A   84 (110)
T 2db8_A            8 PVPATPILQLEECCTHNNSATLSWKQPPLST-VPADGYILELDDGNGGQFREVYV--GKETMCTVDGLHFNSTYNARVKA   84 (110)
T ss_dssp             CCCCCCBCCCCCCSCSSSEEEECCBCCTTCC-SCCSEEEEEECCSSSSCCEEEEE--ESCSCEEEECCCSSSCCEEEEEE
T ss_pred             CCCCCccccceeeccCCCEEEEEECCCCCCC-CCccEEEEEEEeCCCCceEEEEe--CCcCEEEECCCCCCCEEEEEEEE
Confidence            3455553 44444567899999999876554 679999999988664 7776542  35678999999999999999999


Q ss_pred             EcCCCCCCCCCCCCCEE
Q psy12426        486 VNKGGPGEPSKASAPVT  502 (616)
Q Consensus       486 ~n~~G~g~~s~~~~~~~  502 (616)
                      +|..|.|++|......|
T Consensus        85 ~n~~G~s~~S~~~~~~T  101 (110)
T 2db8_A           85 FNKTGVSPYSKTLVLQT  101 (110)
T ss_dssp             ECSSCBCCCCSCEECCC
T ss_pred             EeCCcCCCCCCCEEEEc
Confidence            99999999987654433

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A

Probab=99.35  E-value=5.5e-12  Score=113.43  Aligned_cols=147  Identities=12%  Similarity=0.095  Sum_probs=102.8

Q ss_pred             CCCCCCCCCEEEEe-cCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--C-----ceEeEe-ecCCccEEEcCCCCCCCe
Q psy12426        408 GRPDRPGQPTVTDW-GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--P-----WEKACI-VPANITATSVPDLKEGEE  478 (616)
Q Consensus       408 ~~p~~p~~~~~~~~-~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~-----~~~~~~-~~~~~~~~~l~~L~p~t~  478 (616)
                      .+|++|.++.+... ..+++.++|+++.. ++. ...|.|+|+..+.  .     +..+.. .......+.+.+|.+++.
T Consensus         3 ~pP~~P~~l~c~~~~~~~~~~~~W~p~~~-~~~-~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~   80 (215)
T 1cd9_B            3 YPPASPSNLSCLMHLTTNSLVCQWEPGPE-THL-PTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQY   80 (215)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSC-CSS-CCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSC
T ss_pred             CCCCCCeeeeeecCCCcccEEEEecCCCC-CCC-ceeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccceE
Confidence            57888989988777 68899999997643 444 4569999987653  1     222221 122346788899999999


Q ss_pred             EEEEEEEEcCCCCCCCCCCCCCEEeccCcCCCeeccccccceeeeeecceeEEEeeCeeeeccccccceeeeeeeecCCC
Q psy12426        479 YEFRVIAVNKGGPGEPSKASAPVTCKPRFVAPVIDQYALQDMTAQEYNPFITLLFKNFVLDLNEGLKSMVKLSYIDNVPG  558 (616)
Q Consensus       479 Y~~~v~a~n~~G~g~~s~~~~~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  558 (616)
                      |.|+|.|.|..|.+. +..   ......                                              ....|+
T Consensus        81 Y~~~V~A~N~~G~~~-s~~---~~~~~~----------------------------------------------~~v~p~  110 (215)
T 1cd9_B           81 MAIWVQAENMLGSSE-SPK---LCLDPM----------------------------------------------DVVKLE  110 (215)
T ss_dssp             EEEEEEEEETTEEEE-CCC---EEECGG----------------------------------------------GGBCCC
T ss_pred             EEEEEEEECCCCCcc-Ccc---EEEchH----------------------------------------------HceEeC
Confidence            999999999999763 211   111110                                              013477


Q ss_pred             CCCCCeEEee------cCCcEEEEeeCCCCCCCCceeeeEEEEe-ecCCCCeEEcc
Q psy12426        559 KPSKPEATDV------DKDHIKIKWQQPISNGGSAIKGYEVERR-ERTSGRWIKIT  607 (616)
Q Consensus       559 ~P~~~~~~~~------~~~~i~l~W~~p~~~~~~~i~~Y~i~~~-~~~~~~w~~~~  607 (616)
                      +|.++.+...      +.+++.|+|++|... +..+.+|+|.|+ ..++.+|..+.
T Consensus       111 pP~~~~~~~~~~~~~~~~~~~~l~W~~p~~~-~~~~l~Y~v~y~~~~~~~~w~~~~  165 (215)
T 1cd9_B          111 PPMLQALDIGPDVVSHQPGCLWLSWKPWKPS-EYMEQECELRYQPQLKGANWTLVF  165 (215)
T ss_dssp             CCEEEECCC-------CCSCEEEEEECCGGG-TTSCEEEEEEEEESSTTCCCEEEE
T ss_pred             CCcEEEEEEeccccCCCCCeEEEEEeCCCCC-CeEEEEEEEEEccCCCCCCcEEEe
Confidence            8888776655      678899999998643 344589999999 77888998753

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.34  E-value=1.8e-12  Score=101.02  Aligned_cols=85  Identities=19%  Similarity=0.314  Sum_probs=70.2

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|. ..+.++.+.+|+.+.|.|.+.|.|.|.|+|+|++..+.....|.....                          
T Consensus         8 ~P~~~-~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~--------------------------   60 (103)
T 3qp3_A            8 APRIT-LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT--------------------------   60 (103)
T ss_dssp             EEEEE-ECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE--------------------------
T ss_pred             CCEEE-eCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEEC--------------------------
Confidence            46666 348899999999999999999999999999999999886666654421                          


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                        .....|.|.++...|.|.|.|.|.|..|....
T Consensus        61 --~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   92 (103)
T 3qp3_A           61 --SGVLTLEILDCHTDDSGTYRAVCTNYKGEASD   92 (103)
T ss_dssp             --TTEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             --CCEEEEEEcCCCcccCEEEEEEEEeCCCcEEE
Confidence              12357999999999999999999999886543

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.34  E-value=2.3e-12  Score=99.59  Aligned_cols=86  Identities=19%  Similarity=0.300  Sum_probs=68.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|.. .+.++.+.+|+.+.|.|.+.|.|.|.|+|+|+|..+.....+.-...                          
T Consensus         5 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~--------------------------   57 (99)
T 1g1c_A            5 APKIFE-RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP--------------------------   57 (99)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE--------------------------
T ss_pred             CCceEe-cCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEc--------------------------
Confidence            466764 48899999999999999999999999999999998875444432210                          


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                       ......|.|.++...|.|.|.|.|.|..|....
T Consensus        58 -~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~   90 (99)
T 1g1c_A           58 -EDNVCELVIRDVTGEDSASIMVKAINIAGETSS   90 (99)
T ss_dssp             -ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             -CCCEEEEEECCCCcCCCEEEEEEEEECCCcEEE
Confidence             112357999999999999999999999886543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.34  E-value=1.4e-11  Score=116.57  Aligned_cols=206  Identities=5%  Similarity=-0.066  Sum_probs=116.5

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCc--ceEEEcCCeEEEEEEEeeecCceeE
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLS--DIKVRAGSNFEFDINVIGEPIPTKE  249 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~--~~~v~~g~~~~l~c~~~~~p~~~~~  249 (616)
                      ..|.|.+++..|.|.|+|.|.|..|..........+.+.. +..|.+ ...+.  .+.+.+|+.+.|.|.+. .|.+.+.
T Consensus        51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~-p~~~~~-~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~  127 (289)
T 3mjg_X           51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPD-PTVGFL-PNDAEELFIFLTEITEITIPCRVT-DPQLVVT  127 (289)
T ss_dssp             EEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCC-TTCCBC-CCCHHHHEEEESSCCCEEECCCBS-CTTSCEE
T ss_pred             EEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEEC-CCcCcc-cCCCCcceEEeecCCeEEEEeEcC-CCCceEE
Confidence            5899999999999999999999887522221122222221 122222 11111  16788999999999998 7788899


Q ss_pred             EEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEEecCCCCCC---CCccceeecCC
Q psy12426        250 WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPSPPE---GPLKPSNITKS  325 (616)
Q Consensus       250 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~---~~~~~~~~~~~  325 (616)
                      |++++........  ..  ... .+.    ...|.|.|+|.|.|..+.. .....+.+... .+|.   .+.......+.
T Consensus       128 w~~~~~~~~~~~~--~~--~~~-~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~-~~p~i~~~~~~~~v~~G~  197 (289)
T 3mjg_X          128 LHEKKGDVALPVP--YD--HQR-GFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV-SSINVSVNAVQTVVRQGE  197 (289)
T ss_dssp             EEESSCCSCCCCC--EE--TTT-EEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCC-CCCCCEEEESCSEEETTS
T ss_pred             EEeCCCCCcccee--ec--CCc-Cee----eeccCcEEEEEEEeCCceeeeeeEEEEecCC-CCCCcEEeCCcceeEcCC
Confidence            9987522111111  11  111 121    2468999999999866543 33345555542 2221   11113345678


Q ss_pred             eEEEEEeCCCCCCCCceEEEEEEEEe--CCC-CC-EEEcc----ccccceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426        326 SCNLEWRAPRDDGGTDILHYVVEKMD--MET-GR-WVPMG----DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       326 ~~~l~W~~~~~~~~~~i~~y~v~~~~--~~~-~~-~~~~~----~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~  394 (616)
                      .+.|.|.....    +...+.+.+..  .+. .. .....    ......+.|.++...+.+.|+|.|.|..|....
T Consensus       198 ~v~L~C~~~g~----p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  270 (289)
T 3mjg_X          198 NITLMCIVIGN----EVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD  270 (289)
T ss_dssp             CEEEEEEEESC----SSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEE
T ss_pred             CEEEEEEECCC----CCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCcee
Confidence            89999986332    22223332111  111 11 11110    123467899999999999999999999997543

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.34  E-value=1.3e-12  Score=96.48  Aligned_cols=72  Identities=19%  Similarity=0.269  Sum_probs=60.6

Q ss_pred             CCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      ++.++.+.+|+++.|.|.+.| |.|.|+|+|||.+|..++.|....                            ......
T Consensus         2 ~lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~----------------------------~~~~~~   52 (84)
T 2lu7_A            2 HMTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQ----------------------------AGARQV   52 (84)
T ss_dssp             -CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEE----------------------------CSSCEE
T ss_pred             CCeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEee----------------------------cCCeEE
Confidence            478899999999999999976 999999999999998777776553                            223457


Q ss_pred             eEecCcccCCeEEEEEEEEcC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~  108 (616)
                      |.|.++...|.|.|.|.|.|.
T Consensus        53 L~I~~~~~~D~G~Y~C~a~n~   73 (84)
T 2lu7_A           53 LRVQGARSGDAGEYLCDAPQD   73 (84)
T ss_dssp             EEESSCSSTTCEEEEEECTTT
T ss_pred             EEecCCCCcccEEEEEEECCE
Confidence            999999999999999998553

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.34  E-value=3.9e-12  Score=117.18  Aligned_cols=122  Identities=16%  Similarity=0.072  Sum_probs=64.5

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCC---------C--CCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGP---------G--EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDI  238 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~---------~--~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c  238 (616)
                      ...|.|.+++.+|.|.|.|.+.+..|.         .  .... ...+.+.. ...+|.+....+.. .+..|+.+.|.|
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~-~t~L~V~~~~~~~P~v~~~~p~~-~~~~g~~v~L~C  155 (257)
T 3bn9_D           78 TLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQ-GTMVTVSSASTKGPSVFPLAPSS-KSTSGGTAALGC  155 (257)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECC-CEEEEECSSCCBCCEECCCCC------------CCC
T ss_pred             EEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCC-cEEEEecCCCCcCCcEEEecCcc-cccCCCcEEEEE
Confidence            347999999999999999999987651         0  0111 11233332 23456654333222 356799999999


Q ss_pred             EEeee-cCc-eeEEEECCeeecccCcEEEEecCC----ceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        239 NVIGE-PIP-TKEWLCNDITIISKDRFKIVNDDK----STKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       239 ~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      .+.+. |.+ .+.|++++..+.......+...++    ...|.|.+....+ |.|+|.|.|..
T Consensus       156 ~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~  217 (257)
T 3bn9_D          156 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP  217 (257)
T ss_dssp             EEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGG
T ss_pred             EEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecC
Confidence            99986 776 999999987532110000111111    1357777777767 99999999954

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.34  E-value=4.7e-12  Score=118.14  Aligned_cols=226  Identities=11%  Similarity=0.022  Sum_probs=139.1

Q ss_pred             cccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeec-Cccc--ccEEEEeeccCcccccccCCCceEecccCC
Q psy12426         93 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVG-TLLK--DSIYEQLKRSGLFDQFHLCPIWEKCAQTEG  169 (616)
Q Consensus        93 l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g-~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (616)
                      +.+|+...+.|.+.                            | .|.+  .+.|++  ++..+.     .   .. .  .
T Consensus        15 v~~G~~v~l~C~~~----------------------------g~~p~p~~~v~W~k--~~~~l~-----~---~~-~--~   53 (265)
T 2oz4_A           15 LEVDTQGTVVCSLD----------------------------GLFPVSEAQVHLAL--GDQRLN-----P---TV-T--Y   53 (265)
T ss_dssp             EETTEEEEEEEEEE----------------------------SCSCGGGCEEEEEE--TTEECC-----C---EE-E--E
T ss_pred             EecCCCEEEEEEcc----------------------------CCCCCcceEEEEEe--CCEECC-----c---eE-e--e
Confidence            56789999999987                            4 4555  799998  522211     0   11 1  1


Q ss_pred             CCCeEEeecc---cCCCeE--EEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeec
Q psy12426        170 DTPKGKVLDL---IEGNQY--EFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP  244 (616)
Q Consensus       170 ~~~~l~i~~l---~~~~~~--~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p  244 (616)
                      ....+.+..+   ...|.|  .|+|.|.|..|....+   ..+.+... .+|.+.   +....+.+|+.+.|.|.+.  |
T Consensus        54 ~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~---~~l~V~~~-p~p~~~---~~~~~v~~G~~v~l~C~~~--p  124 (265)
T 2oz4_A           54 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL---QTVTIYSF-PAPNVI---LTKPEVSEGTEVTVKCEAH--P  124 (265)
T ss_dssp             CSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEE---EEEEEECC-CCCEEE---ESCSEEETTCEEEEEEECC--T
T ss_pred             CCCeEEEEeecccccccCCcceEEEEEecCCCCcEEE---EEEEEeCC-CCceee---cCCceecCCCcEEEEEEcc--C
Confidence            1225555555   556666  5999999988763311   12222221 124443   3456688999999999998  8


Q ss_pred             CceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc-CCCCce---eeEEEEEecCCCCCCC--Ccc
Q psy12426        245 IPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN-SWGTDK---GTAKVTVLDIPSPPEG--PLK  318 (616)
Q Consensus       245 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n-~~g~~~---~~~~l~v~~~p~~p~~--~~~  318 (616)
                      .+.+.|  ++..+...        +....|.|..+...|.|.|+|.|.| ..|...   ....+.+..+|.....  +-.
T Consensus       125 ~~~i~W--~g~~~~~~--------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~  194 (265)
T 2oz4_A          125 RAKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGN  194 (265)
T ss_dssp             TSEEEE--SSCSSSCC--------SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSE
T ss_pred             CCEEEE--CCEEccCC--------CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCc
Confidence            899999  77665221        2234688899999999999999985 446654   5667777776654332  112


Q ss_pred             ceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        319 PSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       319 ~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      .....+..+.|.|.....    +..  .+.|...+.   . .....  .+  ..+...+.+.|+|.|.|..|..
T Consensus       195 ~~v~~g~~~~l~C~~~g~----P~p--~i~W~~~~~---~-~~~~g--~~--~~v~~~d~G~Y~C~a~N~~G~~  254 (265)
T 2oz4_A          195 WTWPENSQQTPMCQAWGN----PLP--ELKCLKDGT---F-PLPIG--ES--VTVTRDLEGTYLCRARSTQGEV  254 (265)
T ss_dssp             EEEETTCEECCCCCCEEE----SCC--EEEEEETTT---E-ECCTT--SC--EECCGGGCEEEEEEEEETTEEE
T ss_pred             cEEcCCCeEEEEeECccC----CCC--eEEEEECCc---c-cCCCC--cE--EEeehhhCeEEEEEEECCCCcE
Confidence            344567888888875222    112  233333222   1 11111  11  2356678899999999988864

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=3.3e-12  Score=99.08  Aligned_cols=86  Identities=17%  Similarity=0.255  Sum_probs=72.1

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      .++.+|.++++..++.+++.|+|.+|.    +.|.+|+|+|+..++.+.....+.++..+++|.+|.|++.|.|+|.|+|
T Consensus         6 ~p~~pP~~l~~~~vt~tsi~vsW~pp~----~~i~~Y~I~y~~~~~~~~~~~~v~~~~t~~~l~~L~p~T~Y~v~V~A~~   81 (108)
T 2ee3_A            6 SGLAPPRHLGFSDVSHDAARVFWEGAP----RPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLY   81 (108)
T ss_dssp             CCCCCSSCEEEESCCSSCEEEEESCCS----SCCSEEEEEEEETTTCCBCCEEEETTCCEEEECSCCSSCEEEEEEEEEC
T ss_pred             cCCCCCceEEEEEccCCeEEEEeeCCC----CCccEEEEEEEeCCCCceeEEEcCCCcCEEEcCCCCCCCEEEEEEEEEe
Confidence            456789999999999999999999763    3699999999887653333345567788999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy12426        488 KGGPGEPSKA  497 (616)
Q Consensus       488 ~~G~g~~s~~  497 (616)
                      ..|.|+++..
T Consensus        82 ~~g~s~p~~~   91 (108)
T 2ee3_A           82 PGGGSSTLTG   91 (108)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCcCCCccC
Confidence            9999987653

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=7.5e-12  Score=96.33  Aligned_cols=92  Identities=25%  Similarity=0.336  Sum_probs=79.8

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +|.| ...+.++.+.+|+.+.|.|.+  .|.+.+.|++++..+..+.++.+...+....|.|.++..+|.|.|+|.|.|.
T Consensus         7 p~~~-~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A            7 GLKI-LTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             CCCC-SBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             CCEE-eccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            4455 455678899999999999999  8889999999999998888998888888889999999999999999999997


Q ss_pred             CCCceeeEEEEEecCCC
Q psy12426        295 WGTDKGTAKVTVLDIPS  311 (616)
Q Consensus       295 ~g~~~~~~~l~v~~~p~  311 (616)
                        ....++.|.|..+|.
T Consensus        84 --~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           84 --NVTLPAKVHVISGPS   98 (100)
T ss_dssp             --CCCEEEEEEEECCSC
T ss_pred             --CeeEEEEEEEeCCCC
Confidence              556778888887764

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.34  E-value=1.2e-11  Score=96.35  Aligned_cols=94  Identities=23%  Similarity=0.391  Sum_probs=82.1

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +|.|. ..+.+..+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|.
T Consensus         8 ~P~~~-~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   86 (103)
T 3qp3_A            8 APRIT-LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNY   86 (103)
T ss_dssp             EEEEE-ECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEE-eCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeC
Confidence            45553 34577889999999999999999999999999999988888888877777789999999999999999999999


Q ss_pred             CCCceeeEEEEEecC
Q psy12426        295 WGTDKGTAKVTVLDI  309 (616)
Q Consensus       295 ~g~~~~~~~l~v~~~  309 (616)
                      .|.....+.|.|...
T Consensus        87 ~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           87 KGEASDYATLDVTGG  101 (103)
T ss_dssp             TEEEEEEEEEEEECC
T ss_pred             CCcEEEEEEEEEECC
Confidence            999888888887653

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.33  E-value=9.5e-12  Score=115.12  Aligned_cols=123  Identities=14%  Similarity=0.032  Sum_probs=76.7

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCCC-CCCCCCCCEEecc-ccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCc-e
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGPG-EPSDPTAPHIARA-KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP-T  247 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~~-~~s~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~-~  247 (616)
                      ..|.|.+++.+|.|.|.|.+.|..+.. .... ...+.+.. ...+|.+....+.. .+..|+.+.|.|.+.+. |.+ .
T Consensus        85 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~-~~~L~V~~~~~~~P~v~~~~p~~-~v~~g~~v~L~C~~~g~~P~~i~  162 (261)
T 2xqy_G           85 VYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQ-GTTLTVSSAKTTAPSVYPLAPVC-GDTTGSSVTLGCLVKGYFPEPVT  162 (261)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSSEEEECC-CEEEEECSSCCBCCEEEEECCCC-C--CCSEEEEEEEEEEEBSSCCE
T ss_pred             EEEEEcCCCcccCeEEEEEEecCCCcceEECC-CEEEEEccCCCCCCeEEEeCCCc-cccCCCcEEEEEEEEeEeCCCCE
Confidence            479999999999999999999864211 1111 11233332 22455554322222 35679999999999985 666 9


Q ss_pred             eEEEECCeeecccCcEEEEecC---CceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        248 KEWLCNDITIISKDRFKIVNDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       248 ~~W~~~~~~~~~~~~~~~~~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      +.|++++..+.......+...+   ....|.|......+ |.|+|.|.|....
T Consensus       163 v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          163 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             EEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             EEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            9999988754211000011111   12478898888878 9999999995433

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.33  E-value=1.8e-11  Score=105.95  Aligned_cols=111  Identities=12%  Similarity=0.061  Sum_probs=70.0

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC  252 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~  252 (616)
                      .|.|.+++..|.|.|+|.|.|..|..... ....+.+......|.+.         ..+..+.|.|.+.+.|.+.+.|++
T Consensus        67 sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~-~~~~L~V~~~~~~P~i~---------~~~~~v~L~C~~~~~p~~~~~W~~  136 (182)
T 1hnf_A           67 TLKIKHLKTDDQDIYKVSIYDTKGKNVLE-KIFDLKIQERVSKPKIS---------WTCINTTLTCEVMNGTDPELNLYQ  136 (182)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTSCEEEE-EEEEEEEECCCCCCEEE---------EETTTTEEEEECSSCSSCEEEEEE
T ss_pred             CEEECCCChhhCEEEEEEEEeCCCceeEE-EEEEEEEcCcCCCCEEE---------EccCcEEEEeEccCCCCCEEEEEE
Confidence            67777777777777777777766542210 00112222222334332         123368899999999999999999


Q ss_pred             CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        253 NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      ++..+ ...       .  ..+.+.. ...|.|.|+|.|.|..|.......+
T Consensus       137 ~g~~l-~~~-------~--~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          137 DGKHL-KLS-------Q--RVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             SSCEE-EEE-------S--SCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CCEEC-CCC-------C--cEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            99877 211       1  1233322 4679999999999998877655544

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.33  E-value=1.6e-12  Score=118.55  Aligned_cols=120  Identities=14%  Similarity=0.042  Sum_probs=69.6

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEe-ccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cC-ceeE
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA-RAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PI-PTKE  249 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~-~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~-~~~~  249 (616)
                      .|.|.+++.+|.|.|+|.|.|..|.....   ..+.. .....+|.+....+... ...|+.+.|.|.+.|. |. ..+.
T Consensus        83 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~---~~v~~~~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~  158 (239)
T 1i1c_A           83 ELPIVERDWLNGKTFKCKVNSGAFPAPIE---KSISKPEGTPRGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTE  158 (239)
T ss_dssp             EEECCHHHHHTTCCEEEEEECSSSSSCEE---EEECCCSSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEEhhHccCCCeEEEEEecccCCCCcE---EEEecCCCCCcCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEE
Confidence            57788888888888888888876643211   01110 12234565543222211 1247889999999985 44 4899


Q ss_pred             EEECCeeecccCcEE--EEecCCc---eEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        250 WLCNDITIISKDRFK--IVNDDKS---TKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       250 W~~~~~~~~~~~~~~--~~~~~~~---~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      |+++|..+.......  ...++.-   +.|.|......+.|.|+|.|.|...
T Consensus       159 W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          159 WKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             EEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             EEECCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence            999998874322111  1111211   1233433333468999999999653

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.33  E-value=6.3e-12  Score=110.85  Aligned_cols=168  Identities=19%  Similarity=0.265  Sum_probs=115.8

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecc-cCcEEEEecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      .+|.| ...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+...+  ..|.|.++...|.|.|+|.+.
T Consensus         6 ~~P~i-~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            6 KAPVI-TTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG--QLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             EEEEE-SSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGG--TEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcee-ecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCc--cEEEEcCCCcccCeEEEEEEE
Confidence            44555 3445678899999999999999999999999999988764 4566555443  379999999999999999999


Q ss_pred             cCCCCc-eeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC----CCEEEccccccce
Q psy12426        293 NSWGTD-KGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET----GRWVPMGDVSGTY  367 (616)
Q Consensus       293 n~~g~~-~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~----~~~~~~~~~~~~~  367 (616)
                      |..|.. .....+.+..+|.....+.......+..+.|.|.....    +...  +.|...+.    ......  .....
T Consensus        83 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~----p~~~--v~W~~~~~~~~~~~~~~~--~~~~~  154 (192)
T 2iep_A           83 NGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGN----PKPS--VSWIKGDSALRENSRIAV--LESGS  154 (192)
T ss_dssp             CSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEE----SCCE--EEEEETTEECCCCSSEEE--CTTSC
T ss_pred             cCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEecc----CCce--EEEEeCCEEccCCCcEEE--ecCCc
Confidence            988773 45566666655543322223445567788888875322    1112  22222111    110111  12346


Q ss_pred             EEeccccCCCeEEEEEEEEecCcCC
Q psy12426        368 TRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       368 ~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      +.|.++...+.+.|+|.|.|..|..
T Consensus       155 L~i~~~~~~d~G~Y~C~a~n~~g~~  179 (192)
T 2iep_A          155 LRIHNVQKEDAGQYRCVAKNSLGTA  179 (192)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEecCChhhCEEEEEEEEcCCCcE
Confidence            8999999999999999999998865

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.33  E-value=4.9e-12  Score=114.99  Aligned_cols=119  Identities=13%  Similarity=0.052  Sum_probs=68.8

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEeee-c-Cce
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-P-IPT  247 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p-~~~  247 (616)
                      .|.|.+++.+|.|.|+|.|.|..+...     ..+.+..   ...+|.+....+....+ .+..+.|.|.+.+. | .+.
T Consensus        78 ~L~I~~~~~~D~g~Y~C~~~~~~~~~~-----~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~  151 (231)
T 2w59_A           78 AVPVSTQDWLSGERFTCTVQHEELPLP-----LSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIE  151 (231)
T ss_dssp             EEECCHHHHHTTCCEEEEEECTTCSSC-----EEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCE
T ss_pred             EEEecchhccCCCEEEEEEEcCCCCCc-----eEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcE
Confidence            466666666677777777776553211     1111111   11344443222111111 24579999999996 4 369


Q ss_pred             eEEEECCeeecccCcEE---EE---------ec-CC---ceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        248 KEWLCNDITIISKDRFK---IV---------ND-DK---STKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       248 ~~W~~~~~~~~~~~~~~---~~---------~~-~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      +.|+++|..+..+....   ..         .+ +.   .+.|.|......|.|.|+|.|.|....
T Consensus       152 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          152 IRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             EEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             EEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            99999999876543111   11         11 11   135677777667799999999997544

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.32  E-value=6.4e-12  Score=129.30  Aligned_cols=96  Identities=36%  Similarity=0.693  Sum_probs=86.5

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .+|++|..+.+..++.++++|+|.+|..++|++|++|.|+++..++ .|..+...  ..+.+++.+|.||+.|.|||+|.
T Consensus         8 ~~P~pP~~P~v~~~~~~sv~L~W~~P~~DGgs~I~~Y~vE~~~~~~~~W~~v~~~--~~t~~~V~~L~~g~~Y~FRV~A~   85 (573)
T 3uto_A            8 PEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKS--RYTYTTIEGLRAGKQYEFRIIAE   85 (573)
T ss_dssp             CCCCCCEEEEEEEECSSCEEEEEECCSCCSSSCCCEEEEEEEESSSCCCEEEEEE--SSSEEEECCCCTTCEEEEEEEEE
T ss_pred             CCCccCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEeccc--cCCEEEeCCCCCCCcEeEEEEEE
Confidence            4688899999999999999999999999999999999999999888 89987654  36789999999999999999999


Q ss_pred             cCCCCCCCCCCCCCEEecc
Q psy12426        487 NKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       487 n~~G~g~~s~~~~~~~~~~  505 (616)
                      |..|.|++|.++..++...
T Consensus        86 N~~G~s~PS~~s~~v~~~~  104 (573)
T 3uto_A           86 NKHGQSKPCEPTAPVLIPG  104 (573)
T ss_dssp             ETTEECCCCCCCCCEECC-
T ss_pred             cCceEcCCcCCCCCEEcCC
Confidence            9999999999988877643

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=5.7e-12  Score=100.89  Aligned_cols=86  Identities=17%  Similarity=0.204  Sum_probs=68.9

Q ss_pred             CCccCCC--CCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          1 APHIDRR--HLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         1 ~P~i~~~--~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      ||+|...  .+..+.+.+|+.+.|.|.+.|+|.|.|+|+|+|..+. .+.+....                         
T Consensus        21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~-------------------------   74 (118)
T 2e7c_A           21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRT-------------------------   74 (118)
T ss_dssp             EEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEE-------------------------
T ss_pred             CCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEE-------------------------
Confidence            4666432  4678999999999999999999999999999999887 55554432                         


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                         ......|.|.++...|.|.|.|.|.|..|.....
T Consensus        75 ---~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~  108 (118)
T 2e7c_A           75 ---SDFDTVFFVRQAARSDSGEYELSVQIENMKDTAT  108 (118)
T ss_dssp             ---CSSEEEEEESSCCTTTCEEEEEEEECSSCEECCE
T ss_pred             ---CCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEE
Confidence               1123569999999999999999999999965443

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.32  E-value=3.8e-12  Score=110.41  Aligned_cols=106  Identities=8%  Similarity=-0.003  Sum_probs=71.8

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEE-eeecCceeE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINV-IGEPIPTKE  249 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~-~~~p~~~~~  249 (616)
                      ...|.|.+++..|.|.|+|.+.+.. .   ......+.+......|.+.         ..+..+.|.|.+ .+ |.+.+.
T Consensus        68 ~~sL~I~~v~~~D~G~Y~C~v~~~~-~---~~~~~~L~V~~~~~~P~i~---------~~~~~v~L~C~~~~g-p~p~i~  133 (180)
T 2dru_A           68 NGALRIYNVSKEDRGDYYMRMLHET-E---DQWKITMEVYEMVSKPMIY---------WECSNATLTCEVLEG-TDVELK  133 (180)
T ss_dssp             TCCEEECSCCGGGCEEEEEEEESSS-E---EEEEEEEEEECCCCCCEEE---------EEGGGTEEEEECSSC-TTCEEE
T ss_pred             CccEEEcCCCHHHCeEEEEEEEcCC-e---EEEEEEEEEECCCCCCEEE---------ecCCCEEEEEEeCCC-CCCEEE
Confidence            3479999999999999999997754 1   1111123333222334332         234669999999 55 999999


Q ss_pred             EEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        250 WLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       250 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      |++++..+..       .  ....+.+..  ..|.|.|+|.|.|..+.....
T Consensus       134 W~~~~~~l~~-------~--~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~  174 (180)
T 2dru_A          134 LYQGKEHLRS-------L--RQKTMSYQW--TNLRAPFKCKAVNRVSQESEM  174 (180)
T ss_dssp             EEETTEEEEE-------E--SSSEEEEEC--SCCSSCEEEEEEETTEEEEEE
T ss_pred             EEECCeECcC-------C--CCCEEEEEE--hhcCccEEEEEecCcCccccc
Confidence            9999987641       1  122555533  679999999999988765443

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.32  E-value=1.8e-12  Score=114.74  Aligned_cols=163  Identities=13%  Similarity=-0.015  Sum_probs=106.5

Q ss_pred             ceEEEcCCeEEEEEE---EeeecCceeEEEECCeeec-----------------ccCcEEEEecCCceEEEecCCCCCCc
Q psy12426        225 DIKVRAGSNFEFDIN---VIGEPIPTKEWLCNDITII-----------------SKDRFKIVNDDKSTKLKVFDSKRGDS  284 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~---~~~~p~~~~~W~~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~l~~~~~  284 (616)
                      .+.+..|+++.|.|.   +.+.|.+.+.|+|++..+.                 ...++.+....+...|.|.+++..|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            467889999999995   5678999999999764211                 11234455556677899999999999


Q ss_pred             EEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC---------C
Q psy12426        285 GIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET---------G  355 (616)
Q Consensus       285 g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~---------~  355 (616)
                      |.|+|.|.|..|.....+.|.|..+|.....+.......+..+.|.|...+.    +.-  .+.|...++         .
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~----P~P--~v~W~~~~~~~~~~~~~~~  155 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAF----PHP--HVQWLMPEGVEPAPTAANG  155 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEE----SCC--EEEECCC------------
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCC----CCC--EEEEEECCeeecCcccccc
Confidence            9999999999998888888888765543222112223346678888875322    111  233321111         1


Q ss_pred             CEEEccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        356 RWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       356 ~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ......+.....+.+.++...+.+.|+|.|.|..|...
T Consensus       156 r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          156 GVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred             eEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence            11111112222345568888899999999999999754

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.32  E-value=6.5e-12  Score=117.49  Aligned_cols=129  Identities=12%  Similarity=0.063  Sum_probs=79.5

Q ss_pred             CCCeEEeecccCCCeEEEEEEEEeCCCCCCC-CCCCCCEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEee-ec
Q psy12426        170 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP-SDPTAPHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIG-EP  244 (616)
Q Consensus       170 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~-s~~~~~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-~p  244 (616)
                      ....|.|.+++.+|.|.|.|.+.+..+.... ......+.+..   ...+|.+....+....+..|+.+.|.|.+.+ .|
T Consensus        99 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P  178 (270)
T 3qib_D           99 SPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  178 (270)
T ss_dssp             SCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBS
T ss_pred             cEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeC
Confidence            3448999999999999999999874321110 00111233322   2225554333333333445899999999998 56


Q ss_pred             Cc-eeEEEECCeeecccCcEEE---E-----ecCC---ceEEEecCCCCCC-cEEEEEEEEcCCCCc
Q psy12426        245 IP-TKEWLCNDITIISKDRFKI---V-----NDDK---STKLKVFDSKRGD-SGIYTLAVKNSWGTD  298 (616)
Q Consensus       245 ~~-~~~W~~~~~~~~~~~~~~~---~-----~~~~---~~~l~i~~l~~~~-~g~y~c~a~n~~g~~  298 (616)
                      .+ .+.|++++..+..+.....   .     .++.   ...|.|......| .|.|+|.+.|.....
T Consensus       179 ~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~  245 (270)
T 3qib_D          179 DHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  245 (270)
T ss_dssp             SCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred             CCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCC
Confidence            56 8999999988754321110   0     0111   1356777776666 899999999865443

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.32  E-value=4.2e-12  Score=98.35  Aligned_cols=85  Identities=14%  Similarity=0.264  Sum_probs=67.5

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|.. .|.++.+.+|+.+.|.|.+.|.|.|.|.|+|+|..+.....+.-...+                         
T Consensus         5 ~P~~~~-~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~-------------------------   58 (100)
T 2kdg_A            5 PPRFIQ-VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSE-------------------------   58 (100)
T ss_dssp             EEECCC-CCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEET-------------------------
T ss_pred             CCeEEe-CCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcC-------------------------
Confidence            577764 488999999999999999999999999999999988753332222111                         


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                        .....|.|.++...|.|.|.|.|.|..|...
T Consensus        59 --~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   89 (100)
T 2kdg_A           59 --KGLHSLIFEVVRASDAGAYACVAKNRAGEAT   89 (100)
T ss_dssp             --TTEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             --CCeEEEEECCCCcccCEEEEEEEEcCCCeEE
Confidence              1124799999999999999999999988643

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.31  E-value=3.7e-12  Score=97.40  Aligned_cols=79  Identities=11%  Similarity=0.164  Sum_probs=66.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|. ..+.++.+.+|+.+.|.|.+.|.| |.|.|+|+|..+...++|.-.                            
T Consensus         9 pp~~~-~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----------------------------   58 (95)
T 2ckn_A            9 PWGVP-VEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----------------------------   58 (95)
T ss_dssp             SCCBT-TBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----------------------------
T ss_pred             CCEEE-cCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----------------------------
Confidence            46666 458899999999999999999998 899999999988755554221                            


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                          ...|.|.++...|.|.|.|.|.|..|...
T Consensus        59 ----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~   87 (95)
T 2ckn_A           59 ----GEEVEVRDSIPADSGLYACVTSSPSGSDT   87 (95)
T ss_dssp             ----SSEEEESSCCGGGSEEEEEEEEETTEEEE
T ss_pred             ----CCEEEECCCChHHCEEEEEEeccCCCcEE
Confidence                46899999999999999999999888643

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.5e-11  Score=97.02  Aligned_cols=100  Identities=27%  Similarity=0.434  Sum_probs=83.8

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecc-cCcEEEEec-CCceEEEecCCCCCCcEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      .+|.| ...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+... .....|.|.++...|.|.|+|.|
T Consensus         7 ~~P~~-~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            7 GAPFF-EMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             CCCCB-SSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCEE-EecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            45666 3445778899999999999999999999999999988765 456666554 34458999999999999999999


Q ss_pred             EcCCCCceeeEEEEEecCCCCCC
Q psy12426        292 KNSWGTDKGTAKVTVLDIPSPPE  314 (616)
Q Consensus       292 ~n~~g~~~~~~~l~v~~~p~~p~  314 (616)
                      .|..|.....+.|.|..+|.+|.
T Consensus        86 ~N~~g~~~~~~~l~V~~~~~~P~  108 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAVNSGPS  108 (110)
T ss_dssp             ECTTCCEEECCCEEEECCSCCSS
T ss_pred             EECCCeEEEEEEEEEECCCCCCC
Confidence            99999998889999998887765

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.8e-12  Score=98.74  Aligned_cols=77  Identities=13%  Similarity=0.166  Sum_probs=65.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|. .+++++.+.+|+.+.|.|.+  .|.|.|+|+|||..|..+++|....                           
T Consensus         7 p~~~~-~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~---------------------------   56 (100)
T 2yuz_A            7 GLKIL-TPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQ---------------------------   56 (100)
T ss_dssp             CCCCS-BCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEE---------------------------
T ss_pred             CCEEe-ccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEE---------------------------
Confidence            45665 56999999999999999999  8999999999999998778877653                           


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                       ......|.|.++.+.|.|.|.|.|.|.
T Consensus        57 -~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A           57 -KGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             -CSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             -eCCEEEEEECCCChhhCEEEEEEEcCC
Confidence             112357999999999999999999987

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.31  E-value=3.9e-12  Score=96.91  Aligned_cols=82  Identities=23%  Similarity=0.320  Sum_probs=66.3

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCC--eeeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGG--NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      ||+|. .+++++.+.+|+.+.|.|.+.|.|.|.|+|+|++  ..+...  +.-..                         
T Consensus         2 ~P~i~-~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~~~~-------------------------   53 (93)
T 1wit_A            2 KPKIL-TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE--LLVDA-------------------------   53 (93)
T ss_dssp             CCEEC-CCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT--SEEEE-------------------------
T ss_pred             CCeEE-cCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc--EEEEe-------------------------
Confidence            68886 4588999999999999999999999999999999  766522  11110                         


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                         ......|.|.++...|.|.|.|.|.|..|...
T Consensus        54 ---~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~   85 (93)
T 1wit_A           54 ---KSSTTSIFFPSAKRADSGNYKLKVKNELGEDE   85 (93)
T ss_dssp             ---ETTEEEEECTTBCGGGCEEEEEEEEETTEEEE
T ss_pred             ---cCCEEEEEECCCChhcCEEEEEEEEcCCCeEE
Confidence               11235799999999999999999999998554

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.30  E-value=2.4e-11  Score=93.82  Aligned_cols=94  Identities=27%  Similarity=0.375  Sum_probs=78.2

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEE-ecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      .+|.|. ..+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+. ..+....|.|.++...|.|.|+|.|.
T Consensus         4 ~~P~~~-~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (99)
T 1g1c_A            4 EAPKIF-ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   82 (99)
T ss_dssp             EEEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCceE-ecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEE
Confidence            345553 3456788999999999999999999999999999998776665543 34556789999999999999999999


Q ss_pred             cCCCCceeeEEEEEec
Q psy12426        293 NSWGTDKGTAKVTVLD  308 (616)
Q Consensus       293 n~~g~~~~~~~l~v~~  308 (616)
                      |..|.....+.|.|..
T Consensus        83 N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           83 NIAGETSSHAFLLVQA   98 (99)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCCcEEEEEEEEEec
Confidence            9999888888887754

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.30  E-value=6.2e-11  Score=103.40  Aligned_cols=163  Identities=17%  Similarity=0.142  Sum_probs=112.4

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCC--ceEEEecCCCCCCcEEEEEEEEcCCCC-
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK--STKLKVFDSKRGDSGIYTLAVKNSWGT-  297 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~l~i~~l~~~~~g~y~c~a~n~~g~-  297 (616)
                      ..+.++.+..|+.+.|.|.+.+.|.+.+.|++++..+....+..+...+.  ...|.|.++...|.|.|+|.+.|..|. 
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   86 (182)
T 1rhf_A            7 GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE   86 (182)
T ss_dssp             CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             eCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcE
Confidence            34567889999999999999999999999999999887665555443332  368999999999999999999998775 


Q ss_pred             ceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCC
Q psy12426        298 DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGH  377 (616)
Q Consensus       298 ~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~  377 (616)
                      ......+.+..+|.....+.......+..+.|.|......  .+ ..+.  |...+...  .........+.|.++.  +
T Consensus        87 ~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~p-~~v~--W~~~~~~~--~~~~~~~~~L~i~~~~--d  157 (182)
T 1rhf_A           87 ISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPP--EP-VTIV--WWRGTTKI--GGPAPSPSVLNVTGVT--Q  157 (182)
T ss_dssp             ECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSS--SC-CEEE--EEETTEEC--SCSEESSEEEEECCCS--S
T ss_pred             EEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCC--CC-CEEE--EEcCCeEC--CCCCCCceEEEEeccc--c
Confidence            3567788887766533322234455677899999864321  11 1222  22211100  0001145678888874  5


Q ss_pred             eEEEEEEEEecCcCC
Q psy12426        378 DYNFRVKAVNKIGES  392 (616)
Q Consensus       378 ~y~~~v~a~n~~g~~  392 (616)
                      .+.|+|.|.|..|..
T Consensus       158 ~G~Y~C~a~N~~g~~  172 (182)
T 1rhf_A          158 STMFSCEAHNLKGLA  172 (182)
T ss_dssp             CEEEEEEEEETTEEE
T ss_pred             CeEEEEEEECCCCCc
Confidence            689999999998864

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}

Probab=99.30  E-value=5.1e-12  Score=100.74  Aligned_cols=86  Identities=20%  Similarity=0.249  Sum_probs=71.1

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .+|++|.++.+..++.+++.|+|.+|..    .+.+|+|.|+..++ .+.....+++....++|.+|.|++.|.|+|+|+
T Consensus        27 tp~~~P~~l~v~~~t~~Si~lsW~~p~~----~i~~Y~V~y~~~~~~~~~~~~~v~~~~t~~~l~gL~P~t~Y~~~V~A~  102 (121)
T 2ocf_D           27 SVSDVPTKLEVVAATPTSLLISWDAPAV----TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAV  102 (121)
T ss_dssp             --CCSCEEEEEEEECSSCEEEEEECCSS----CCCEEEEEEEETTTCSCBEEEEEETTCCEEEECCCCTTCEEEEEEEEE
T ss_pred             CCCCCCCccEEEecCCCEEEEEEcCCCC----CCcEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            4678899999999999999999998743    48999999988765 333444556778999999999999999999999


Q ss_pred             cCCCCCCCCCC
Q psy12426        487 NKGGPGEPSKA  497 (616)
Q Consensus       487 n~~G~g~~s~~  497 (616)
                      |..|.|++|..
T Consensus       103 ~~~G~g~~Ss~  113 (121)
T 2ocf_D          103 TGLRLMLAGSK  113 (121)
T ss_dssp             CCHHHHHHSCC
T ss_pred             eCCCccCCCCC
Confidence            99999887653

>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.30  E-value=6.4e-12  Score=99.79  Aligned_cols=82  Identities=22%  Similarity=0.357  Sum_probs=67.7

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      ..|++|.++++..++.+++.|+|.+|..    .+.+|.|+|+..++.... ..+.++...++|.+|.|++.|.|+|+|+|
T Consensus         6 t~p~~P~~l~~~~~t~~sv~lsW~~p~~----~i~~Y~v~y~~~~~~~~~-~~v~~~~t~~~l~~L~P~t~Y~~~V~A~~   80 (115)
T 2cuh_A            6 SGPDGPTQLRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAPPLQ-AETPGSAVDYPLHDLVLHTNYTATVRGLR   80 (115)
T ss_dssp             CCCSSCEEEECCCCSSSCEEEEEECCSS----CCSEEEEEEECSSSCCEE-EEEETTCSEEEECSCCSSSEEEEEEEEEE
T ss_pred             cCCCCCcceEEEeccCCeEEEEEECCCC----CccEEEEEEEcCCCCcEE-EEECCCccEEEEeCCCCCCEEEEEEEEEe
Confidence            5688899999999999999999997642    588999999876543332 34567788999999999999999999999


Q ss_pred             CCCCCCC
Q psy12426        488 KGGPGEP  494 (616)
Q Consensus       488 ~~G~g~~  494 (616)
                      ..|.+.+
T Consensus        81 ~~~~s~~   87 (115)
T 2cuh_A           81 GPNLTSP   87 (115)
T ss_dssp             TTEECCC
T ss_pred             CCCcCCC
Confidence            8887654

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.30  E-value=2.7e-11  Score=93.53  Aligned_cols=92  Identities=32%  Similarity=0.507  Sum_probs=80.4

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +|.+ ...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|.
T Consensus         6 ~P~i-~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A            6 KPVI-VTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EEEE-EECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEE-EecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            4555 344567889999999999999999999999999999988888888887777779999999999999999999999


Q ss_pred             CCCceeeEEEEEe
Q psy12426        295 WGTDKGTAKVTVL  307 (616)
Q Consensus       295 ~g~~~~~~~l~v~  307 (616)
                      .|.....+.+.|.
T Consensus        85 ~g~~~~~~~l~V~   97 (99)
T 3puc_A           85 AGSVSSSCKLTIK   97 (99)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCcEeEEEEEEEE
Confidence            9988888877765

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.30  E-value=5.4e-11  Score=105.77  Aligned_cols=165  Identities=12%  Similarity=0.111  Sum_probs=108.3

Q ss_pred             cceEEEcCCeEEEEEEEee-ecCceeEEEECCeeecccCcEEEEecC--CceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        224 SDIKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDD--KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~--~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      .+..+.+|+.+.|.|.+.+ .|.+.+.|++++..+..+.++.+....  +...|.|.++...|+|.|+|.|.|  |....
T Consensus        10 ~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~   87 (207)
T 3rbs_A           10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATN   87 (207)
T ss_dssp             EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEE
T ss_pred             CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEE
Confidence            3578899999999999964 799999999999999887777776554  456899999999999999999999  54443


Q ss_pred             eEEEEEe---------------------cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEE
Q psy12426        301 TAKVTVL---------------------DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP  359 (616)
Q Consensus       301 ~~~l~v~---------------------~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~  359 (616)
                      ...+.+.                     .+|..... +......+..+.|.|..........+.+|.- ......... .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~-g~~l~~~~~-~  164 (207)
T 3rbs_A           88 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKD-EREISVDEK-H  164 (207)
T ss_dssp             EEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEE-EEEEEETTTEEEEEEEEESCCTTCEEEEEET-TEEECCCCC-C
T ss_pred             EEEEEEEccchhhhcccccccccccccCCCCceEec-CCcEEcCCCcEEEEEEEeCCCCCCEEEEEEC-CEECCCCCc-e
Confidence            3333211                     01211111 2234456778999998543211112222210 000000000 0


Q ss_pred             ccccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        360 MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       360 ~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ........+.|.++...+.+.|+|.|.|..|...
T Consensus       165 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  198 (207)
T 3rbs_A          165 DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDK  198 (207)
T ss_dssp             CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEE
Confidence            1112334689999999999999999999999753

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.30  E-value=5.6e-12  Score=97.45  Aligned_cols=84  Identities=18%  Similarity=0.237  Sum_probs=69.4

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|. ..+.++.+.+|+.+.|.|.+.|.|.|.|.|+|+|..+...+.|.....                          
T Consensus         6 ~P~i~-~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~--------------------------   58 (99)
T 3puc_A            6 KPVIV-TGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSED--------------------------   58 (99)
T ss_dssp             EEEEE-ECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEE--------------------------
T ss_pred             CCEEE-ecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEe--------------------------
Confidence            46666 348899999999999999999999999999999998876666654421                          


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                        .....|.|.++...|.|.|.|.|.|..|...
T Consensus        59 --~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~   89 (99)
T 3puc_A           59 --KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVS   89 (99)
T ss_dssp             --TTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             --CCEEEEEECCCCcccCEEEEEEEEeCCCcEe
Confidence              1234799999999999999999999888653

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A

Probab=99.29  E-value=1.7e-11  Score=94.54  Aligned_cols=81  Identities=19%  Similarity=0.276  Sum_probs=67.8

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      .|++|.++++..++.+++.|+|.+|. . ++.+.+|.|+|+..++ .+.....++.....++|.+|.|++.|.|+|+|.|
T Consensus         4 ~~~~P~~l~v~~~t~~Sv~l~W~~p~-~-~~~i~~Y~v~y~~~~~~~~~~~~~v~~~~t~~~l~~L~p~t~Y~~~V~A~~   81 (101)
T 3k2m_C            4 VSSVPTKLEVVAATPTSLLISWDAPM-S-SSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWG   81 (101)
T ss_dssp             EEBSSCEEEEEEEETTEEEEEECCCC-T-TSCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCCCcceEEeecCCCEEEEEecCCC-C-CCceeeEEEEEEECCCCCccEEEEcCCCccEEEECCCCCCCEEEEEEEEEe
Confidence            46789999999999999999999875 3 3469999999998765 2323334566788999999999999999999999


Q ss_pred             CCCC
Q psy12426        488 KGGP  491 (616)
Q Consensus       488 ~~G~  491 (616)
                      ..|.
T Consensus        82 ~~~~   85 (101)
T 3k2m_C           82 EDSA   85 (101)
T ss_dssp             ECTT
T ss_pred             CCcc
Confidence            9988

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A

Probab=99.29  E-value=9.3e-12  Score=96.60  Aligned_cols=83  Identities=24%  Similarity=0.355  Sum_probs=69.3

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .|++|.++.+..++.+++.|+|.+|.    +.+.+|.|+|+..+.  .+.. ..+.+...+++|.+|.|++.|.|+|+|.
T Consensus         2 ~p~~P~~l~v~~~t~~sv~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~-~~v~~~~~~~~l~~L~p~t~Y~~~V~A~   76 (104)
T 2rb8_A            2 RLDAPSQIEVKDVTDTTALITWMPPS----QPVDGFELTYGIKDVPGDRTT-IDLTEDENQYSIGNLKPDTEYEVSLISR   76 (104)
T ss_dssp             CCCCCEEEEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTTCCEE-EEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCccEEEEecCCeEEEEEcCCC----CccceEEEEEEECcCCCceEE-EEcCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            47889999999999999999999764    358999999977542  4443 3456778899999999999999999999


Q ss_pred             cCCCCCCCCC
Q psy12426        487 NKGGPGEPSK  496 (616)
Q Consensus       487 n~~G~g~~s~  496 (616)
                      |..|.|.++.
T Consensus        77 ~~~g~s~p~~   86 (104)
T 2rb8_A           77 RGDMSSNPAK   86 (104)
T ss_dssp             ETTEECCCEE
T ss_pred             eCCccCCCEE
Confidence            9999987543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.29  E-value=1.3e-11  Score=114.11  Aligned_cols=122  Identities=11%  Similarity=-0.001  Sum_probs=74.2

Q ss_pred             EEeecccCCCeEEEEEEEEeCCCC---CCCCCCCCCEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEee-ecCc
Q psy12426        174 GKVLDLIEGNQYEFRVLAVNKGGP---GEPSDPTAPHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIG-EPIP  246 (616)
Q Consensus       174 l~i~~l~~~~~~~y~c~a~n~~g~---~~~s~~~~~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~-~p~~  246 (616)
                      |.|.+++.+|+|.|.|.+.+..+.   .........+.+..   ...+|.+....+....+..|..+.|.|.+.+ .|.+
T Consensus        76 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~  155 (253)
T 3to4_D           76 LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  155 (253)
T ss_dssp             CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCc
Confidence            899999999999999999876431   00000111222222   2245554332222222335689999999998 5656


Q ss_pred             -eeEEEECCeeecccCcEEE---E-----ecCC---ceEEEecCCCCCC-cEEEEEEEEcCC
Q psy12426        247 -TKEWLCNDITIISKDRFKI---V-----NDDK---STKLKVFDSKRGD-SGIYTLAVKNSW  295 (616)
Q Consensus       247 -~~~W~~~~~~~~~~~~~~~---~-----~~~~---~~~l~i~~l~~~~-~g~y~c~a~n~~  295 (616)
                       .+.|++++..+........   .     .++.   .+.|.|......| .+.|+|.+.+..
T Consensus       156 i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          156 VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             EEEEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence             8999999988754321110   0     0111   1356677666565 679999999853

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.29  E-value=1.8e-11  Score=90.33  Aligned_cols=81  Identities=20%  Similarity=0.387  Sum_probs=70.7

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      ..++.+.+|+.+.|.|.+.+ |.+.+.|+|++..+..+.++.+...+....|.|.++...|+|.|+|.|    |....++
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----~n~~~~a   77 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA----PQDSRIF   77 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEEC----TTTCEEE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEE----CCEEEEE
Confidence            35788999999999999866 888999999999999889999988888889999999999999999998    4455677


Q ss_pred             EEEEec
Q psy12426        303 KVTVLD  308 (616)
Q Consensus       303 ~l~v~~  308 (616)
                      .|.|..
T Consensus        78 ~l~V~e   83 (84)
T 2lu7_A           78 LVSVEE   83 (84)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            777764

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=4.7e-12  Score=98.64  Aligned_cols=92  Identities=22%  Similarity=0.283  Sum_probs=74.0

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      .+|.+|.++.+...+.+++.|+|.+|. ...++.+.+|.|+|+..+. .|..   .......+.|.+|.|++.|.|+|+|
T Consensus         7 ~pp~~P~~l~~~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~~~~---~~~~~~~~~i~~L~p~t~Y~~~V~A   83 (103)
T 2edy_A            7 GPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQ---NITTDTRFTLTGLKPDTTYDIKVRA   83 (103)
T ss_dssp             CCSCCCEEEECSSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSCCEEE---EEESSSCCEECSCCTTCCEEEECCE
T ss_pred             CCCCCCeeeEEEecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCCccEE---EcCCcceEEEcCCCCCCEEEEEEEE
Confidence            456788888888889999999999884 2334479999999998775 3333   2345778999999999999999999


Q ss_pred             EcCCCCCCCCCCCCCEE
Q psy12426        486 VNKGGPGEPSKASAPVT  502 (616)
Q Consensus       486 ~n~~G~g~~s~~~~~~~  502 (616)
                      .|..|.|++|....+.|
T Consensus        84 ~n~~G~g~~S~~~~~~T  100 (103)
T 2edy_A           84 WTSKGSGPLSPSIQSRT  100 (103)
T ss_dssp             ECSSCBCCCCCCCCCCC
T ss_pred             ECCCCCCCCCCCEEEEe
Confidence            99999999998766543

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic}

Probab=99.29  E-value=1.5e-11  Score=94.48  Aligned_cols=82  Identities=29%  Similarity=0.482  Sum_probs=68.6

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      +++|.++.+..++.+++.|+|.+|.    +.+.+|.|+|+..++ .+............++|.+|.|++.|.|+|+|.|.
T Consensus         2 ~~~P~~l~v~~~~~~sv~l~W~~p~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   77 (98)
T 3teu_A            2 LDAPTDLQVTNVTDTSITVSWTPPS----ATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALKD   77 (98)
T ss_dssp             CCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTSCSCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCceEEEEecCCEEEEEEeCCC----CcccEEEEEEEECCCCCceEEEEcCCCcCEEEecCCCCCCEEEEEEEEEeC
Confidence            5688899999999999999999872    468999999986554 33334455677899999999999999999999999


Q ss_pred             CCCCCCC
Q psy12426        489 GGPGEPS  495 (616)
Q Consensus       489 ~G~g~~s  495 (616)
                      .|.|+++
T Consensus        78 ~G~s~p~   84 (98)
T 3teu_A           78 NQESPPL   84 (98)
T ss_dssp             TEECCCE
T ss_pred             CCCCCCe
Confidence            9988754

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.29  E-value=3.5e-11  Score=95.73  Aligned_cols=100  Identities=22%  Similarity=0.352  Sum_probs=84.0

Q ss_pred             cCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecc-cCcEEEEecC-CceEEEecCCCCCCcEEEEEE
Q psy12426        213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDD-KSTKLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       213 ~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~l~~~~~g~y~c~  290 (616)
                      ..+|.| ...+.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+...+ ....|.|.++...|.|.|+|.
T Consensus        13 ~~~p~f-~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (116)
T 2kkq_A           13 KRAPMF-IYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS   91 (116)
T ss_dssp             CBCCCB-SSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCCCeE-EeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEE
Confidence            345666 4556788999999999999999999999999999998764 4667666544 345899999999999999999


Q ss_pred             EEcCCCCceeeEEEEEecCCCCC
Q psy12426        291 VKNSWGTDKGTAKVTVLDIPSPP  313 (616)
Q Consensus       291 a~n~~g~~~~~~~l~v~~~p~~p  313 (616)
                      |.|..|.....+.|.|..+|.++
T Consensus        92 a~N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           92 AVNEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             EEETTEEEEEEEEEEEECCSCCC
T ss_pred             EEcCCCeEEEEEEEEEeCCCCCC
Confidence            99999998889999998877654

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.28  E-value=1.7e-11  Score=95.24  Aligned_cols=83  Identities=18%  Similarity=0.250  Sum_probs=70.8

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      .+|++|.++++..++.+++.|+|.+|..    .+.+|.|+|+..++.|... .+.....+++|.+|.|++.|.|+|+|.|
T Consensus         6 t~p~~P~~l~v~~~~~~sv~lsW~~p~~----~i~~Y~i~y~~~~~~~~~~-~~~~~~ts~~l~~L~p~t~Y~~~V~A~~   80 (105)
T 2cum_A            6 SGLEAPRDLEAKEVTPRTALLTWTEPPV----RPAGYLLSFHTPGGQTQEI-LLPGGITSHQLLGLFPSTSYNARLQAMW   80 (105)
T ss_dssp             TTCCCCEEEEEESCCSSCEEEEEECCSS----CCSEEEEEEECTTSCEEEE-EECSSCSEEEECSCCTTCEEEEEEEEEB
T ss_pred             cCCCCCCceEEEeccCCEEEEEEcCCCC----ccceEEEEEEeCCCceEEE-EECCCccEEEECCCCCCCEEEEEEEEEe
Confidence            5788999999999999999999998642    5899999998766555543 4567789999999999999999999999


Q ss_pred             CCCCCCCC
Q psy12426        488 KGGPGEPS  495 (616)
Q Consensus       488 ~~G~g~~s  495 (616)
                      ..|.|.+.
T Consensus        81 ~~g~s~~~   88 (105)
T 2cum_A           81 GQSLLPPV   88 (105)
T ss_dssp             TTBCCCCE
T ss_pred             CCcccCCE
Confidence            99988753

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=6.1e-12  Score=97.39  Aligned_cols=83  Identities=17%  Similarity=0.239  Sum_probs=67.6

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||.|. ..|.++.+.+|+.+.|.|.+.|.|.|.|.|+|++..+.. ...|..                            
T Consensus         8 ~P~i~-~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~----------------------------   58 (100)
T 2edj_A            8 PPIIL-QGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI----------------------------   58 (100)
T ss_dssp             SCEEE-ECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE----------------------------
T ss_pred             CCEEE-eCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE----------------------------
Confidence            56666 458899999999999999999999999999999988763 223211                            


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                         .....|.|.++...|.|.|.|.|.|..|.....
T Consensus        59 ---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~   91 (100)
T 2edj_A           59 ---QEQGTLQIKNLRISDTGTYTCVATSSSGETSWS   91 (100)
T ss_dssp             ---CTTCCEEEESCCTTTCCEEEEEEECSSCCCBCC
T ss_pred             ---cCCCEEEEccCCcccCEEEEEEEEcCCCCEEEE
Confidence               124579999999999999999999999876444

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.28  E-value=4.4e-11  Score=90.46  Aligned_cols=89  Identities=19%  Similarity=0.322  Sum_probs=73.8

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.| ...+.++.+.+|+.+.|.|.+.+ +.+.+.|++++..+..+.++.+...+....|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~~~~-~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            4 ALIEV-EKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCE-EECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCcEe-eccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            34555 45567889999999999999986 45789999999999888888888878788999999999999999999977


Q ss_pred             CCCCceeeEEEEEec
Q psy12426        294 SWGTDKGTAKVTVLD  308 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~  308 (616)
                      .    ..++.|.|.+
T Consensus        82 ~----~~sa~L~V~~   92 (93)
T 1waa_A           82 T----KSAANLKVKE   92 (93)
T ss_dssp             E----EEEEEEEEEC
T ss_pred             C----cEEEEEEEEc
Confidence            3    3566666654

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.28  E-value=2.5e-11  Score=95.59  Aligned_cols=102  Identities=24%  Similarity=0.292  Sum_probs=82.3

Q ss_pred             cCCCCCCCCccc-eeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEE
Q psy12426        308 DIPSPPEGPLKP-SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAV  386 (616)
Q Consensus       308 ~~p~~p~~~~~~-~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  386 (616)
                      ..|.+|.+ +.+ .....+++.|+|..|..+++..+..|.|+++......|..........+.+.+|.+++.|.|+|+|.
T Consensus         7 ~~P~~P~~-~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   85 (110)
T 2crz_A            7 GPPGPCLP-PRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAA   85 (110)
T ss_dssp             CCCCCCCC-CEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEEESCSEEEEESCCTTCEEEECCEEE
T ss_pred             CCCCCCCC-ceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceEEEEeCCcEEEEECCcCCCCEEEEEEEEE
Confidence            46677776 444 4567789999998887777789999999999877778887766667889999999999999999999


Q ss_pred             ecCcCCCCccccCCEEccCCCCCCCCC
Q psy12426        387 NKIGESLPLVCQSPITAKDPFGRPDRP  413 (616)
Q Consensus       387 n~~g~~~~~~~s~~~~~~~~~~~p~~p  413 (616)
                      |..|.+.++   ..+.+.+...+|.+|
T Consensus        86 n~~G~g~~S---~~~~~~T~~~~P~~P  109 (110)
T 2crz_A           86 NKMGFGPFS---EKCDITTAPGSGPSS  109 (110)
T ss_dssp             CSSCBCCCC---CCEEEECCCSCCCCC
T ss_pred             cCCccCCCC---CccccccCCCCCCCC
Confidence            999998874   455566666667665

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.28  E-value=1.3e-11  Score=97.64  Aligned_cols=89  Identities=16%  Similarity=0.130  Sum_probs=64.7

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||+|.+..+     ..+..+.|.|.+.|+|.|.|+|+|||+.|..+..+.....+..                     ..
T Consensus         4 pP~I~l~~~-----~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~---------------------~~   57 (126)
T 1he7_A            4 PASVQLHTA-----VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA---------------------AN   57 (126)
T ss_dssp             CCCCCCCCC-----CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCC---------------------SS
T ss_pred             CCEEEccCC-----ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeecc---------------------cc
Confidence            788864432     3678999999999999999999999999986554332211100                     00


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .......|.|.++.+.|.|.|.|.|.|..|.....
T Consensus        58 ~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           58 ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            00113579999999999999999999999976544

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=8.7e-12  Score=98.44  Aligned_cols=87  Identities=17%  Similarity=0.297  Sum_probs=69.7

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||.|.. .+.++.+.+|+.+.|.|.+.|.|.|.|+|+|++..+.. .+.|.-....                        
T Consensus         8 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~------------------------   62 (110)
T 2dm2_A            8 APFFEM-KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDL------------------------   62 (110)
T ss_dssp             CCCBSS-CCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECT------------------------
T ss_pred             CCEEEe-cCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECC------------------------
Confidence            577774 48899999999999999999999999999999998874 4444433210                        


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                         .....|.|.++...|.|.|.|.|.|..|.....
T Consensus        63 ---~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~   95 (110)
T 2dm2_A           63 ---DGTCSLHTTASTLDDDGNYTIMAANPQGRISCT   95 (110)
T ss_dssp             ---TCEEEEEESSCCTTTCSCCEEEEECTTCCEEEC
T ss_pred             ---CcEEEEEECCCChhhCEEEEEEEEECCCeEEEE
Confidence               012379999999999999999999999976444

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.27  E-value=7.5e-12  Score=96.69  Aligned_cols=85  Identities=24%  Similarity=0.361  Sum_probs=66.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeecc-ceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP-IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G-~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||.|.. .|.++.+.+|+.+.|.|.+.|.|.|.|.|+|++..+.... .|.-..                          
T Consensus         5 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~--------------------------   57 (99)
T 1u2h_A            5 PPTFKV-SLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEA--------------------------   57 (99)
T ss_dssp             EEEEEE-CCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEEC--------------------------
T ss_pred             CCEEEE-cCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEEC--------------------------
Confidence            566664 4888999999999999999999999999999999886432 222111                          


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                        ......|.|.++...|.|.|.|.|.|..|....
T Consensus        58 --~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~   90 (99)
T 1u2h_A           58 --EGGLCRLRILAAERGDAGFYTCKAVNEYGARQC   90 (99)
T ss_dssp             --GGGEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             --CCCEEEEEEccCCcCCCEEEEEEEEECCCceeE
Confidence              011236999999999999999999999886543

>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.27  E-value=2.4e-11  Score=92.57  Aligned_cols=82  Identities=22%  Similarity=0.374  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCC-ceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~-~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      ++|.++++..++.+++.|+|.+|.    +.+.+|.|+|+..++. +.......+...+++|.+|.|++.|.|+|+|+|..
T Consensus         3 ~~P~~l~~~~~~~~si~lsW~~p~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~   78 (94)
T 1j8k_A            3 DRPKGLAFTDVDVDSIKIAWESPQ----GQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDD   78 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCS----SCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSS
T ss_pred             CCCCccEEEeecCCEEEEEEcCCC----CCcceEEEEEEeCCCCCceEEecCCCCccEEEeCCCCCCCEEEEEEEEEcCC
Confidence            578899999999999999999874    3689999999887642 22222334567899999999999999999999999


Q ss_pred             CCCCCCC
Q psy12426        490 GPGEPSK  496 (616)
Q Consensus       490 G~g~~s~  496 (616)
                      |.|.++.
T Consensus        79 g~s~p~~   85 (94)
T 1j8k_A           79 MESQPLI   85 (94)
T ss_dssp             CCCCCEE
T ss_pred             CcCCCEE
Confidence            9887653

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.27  E-value=4.4e-11  Score=109.74  Aligned_cols=167  Identities=22%  Similarity=0.239  Sum_probs=111.9

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcE-EEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF-KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      +..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....+. ..........|.|.++...|.|.|+|.+.|..|.....
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~  101 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT  101 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEE
Confidence            35688999999999999999999999999999987654322 11222334589999999999999999999988888777


Q ss_pred             EEEEEecCCCC-CCC----CccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEe--CC------CCCEEE-------cc
Q psy12426        302 AKVTVLDIPSP-PEG----PLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMD--ME------TGRWVP-------MG  361 (616)
Q Consensus       302 ~~l~v~~~p~~-p~~----~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~--~~------~~~~~~-------~~  361 (616)
                      ..+.+...+.. |..    +-......+..+.|.|......    ...+.+.+..  .+      ......       ..
T Consensus       102 ~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p----~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  177 (241)
T 3grw_A          102 YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDA----QPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISES  177 (241)
T ss_dssp             EEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSS----CCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSB
T ss_pred             EEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCC----CCEEEEEEcccCCCcccCCCCceeeeeeeEeeeee
Confidence            88887664322 110    0112334567889999863322    1223332210  11      000000       00


Q ss_pred             ccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        362 DVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       362 ~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ......+.|.++...+.+.|+|.|.|..|...
T Consensus       178 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~  209 (241)
T 3grw_A          178 VEADVRLRLANVSERDGGEYLCRATNFIGVAE  209 (241)
T ss_dssp             SEEEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             cCCceEEEECcCCcccCcEEEEEEecCcceEE
Confidence            11245688999999999999999999888753

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.27  E-value=1.2e-11  Score=93.76  Aligned_cols=74  Identities=22%  Similarity=0.255  Sum_probs=62.9

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.|. ..|.+..+.+|+.+.|.|.+.|+|.|.|.|+|++..+.                                     
T Consensus         4 ~~i~-~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~-------------------------------------   45 (91)
T 3bfo_A            4 LQIC-VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT-------------------------------------   45 (91)
T ss_dssp             CEEE-ECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECT-------------------------------------
T ss_pred             eEEE-ECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCC-------------------------------------
Confidence            4454 34888999999999999999999999999999998776                                     


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      ......|.|.++...|.|.|.|.|.|..|...
T Consensus        46 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~   77 (91)
T 3bfo_A           46 HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQD   77 (91)
T ss_dssp             TCCSSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             cCCCCeEEECCCCHHhCEEEEEEEEcCCCCEE
Confidence            12245799999999999999999999988543

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.26  E-value=7.2e-11  Score=90.64  Aligned_cols=89  Identities=19%  Similarity=0.303  Sum_probs=78.4

Q ss_pred             cCCcceEEEcCCeEEEEEEEeee-cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      ..+.++.+.+|+.+.|.|.+.+. |.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..|...
T Consensus         6 ~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~   85 (97)
T 2bk8_A            6 GQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDS   85 (97)
T ss_dssp             CCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred             ccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEe
Confidence            34567889999999999999997 99999999999998888888876667777999999999999999999999999988


Q ss_pred             eeEEEEEecC
Q psy12426        300 GTAKVTVLDI  309 (616)
Q Consensus       300 ~~~~l~v~~~  309 (616)
                      ..+.|.|...
T Consensus        86 ~~~~l~V~~~   95 (97)
T 2bk8_A           86 SYAELFVKGV   95 (97)
T ss_dssp             EEEEEEETTT
T ss_pred             EEEEEEEEec
Confidence            8888887653

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.26  E-value=2.9e-12  Score=100.11  Aligned_cols=85  Identities=20%  Similarity=0.325  Sum_probs=69.7

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      +|.|. ..|+++.+.+|+.+.|.|.+.|.|.|.|.|+|+|..+...+.|.-..                           
T Consensus        14 ~~~i~-~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~---------------------------   65 (106)
T 1nct_A           14 AARIL-TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT---------------------------   65 (106)
T ss_dssp             CCEEE-ECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEE---------------------------
T ss_pred             CCEEE-ECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE---------------------------
Confidence            35665 45889999999999999999999999999999998887555654432                           


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                       ......|.|.++...|.|.|.|.|.|..|....
T Consensus        66 -~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   98 (106)
T 1nct_A           66 -TKYKSTFEISSVQASDEGNYSVVVENSEGKQEA   98 (106)
T ss_dssp             -CSSEEEEEECCCCSSCCSEEEECCBCSSCBCCE
T ss_pred             -CCCEEEEEECcCCchhCEEEEEEEEeCCCeEEE
Confidence             112458999999999999999999999987543

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.26  E-value=3.3e-11  Score=93.24  Aligned_cols=94  Identities=27%  Similarity=0.370  Sum_probs=76.8

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEE-EEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      +|.| ...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....+.. ....+....|.|.++...|.|.|+|.|.|
T Consensus         5 ~P~~-~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            5 PPRF-IQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEC-CCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeE-EeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            4555 334567889999999999999999999999999999887654332 33344456899999999999999999999


Q ss_pred             CCCCceeeEEEEEecC
Q psy12426        294 SWGTDKGTAKVTVLDI  309 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~~  309 (616)
                      ..|.....+.|.|...
T Consensus        84 ~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           84 RAGEATFTVQLDVLAK   99 (100)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEec
Confidence            9999888888888654

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.26  E-value=1.7e-10  Score=103.34  Aligned_cols=162  Identities=17%  Similarity=0.121  Sum_probs=113.1

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCceeEEEECCeee------------cccCcEEEEecCCceEEEecCCCCCCcEEEEE
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  289 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c  289 (616)
                      .+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....++.+..    ..|.|.+++..|.|.|+|
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~G~Y~C   82 (212)
T 1f97_A            7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDNGEYTC   82 (212)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGCEEEEE
T ss_pred             cCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccCeEEEE
Confidence            356788999999999999999999999999987652            1234444443    489999999999999999


Q ss_pred             EEEcCCC--CceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCE--E------
Q psy12426        290 AVKNSWG--TDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRW--V------  358 (616)
Q Consensus       290 ~a~n~~g--~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~--~------  358 (616)
                      .+.|..|  .....+.+.+..+|..+..+.......+..+.|.|.....   .+...  +.|...+. ..-  .      
T Consensus        83 ~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~---~p~~~--i~W~~~~~~~l~~~~~~~~~~  157 (212)
T 1f97_A           83 MVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDG---SPPSE--YSWFKDGISMLTADAKKTRAF  157 (212)
T ss_dssp             EEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCC---BSCCE--EEEEETTEESBC-----CBSC
T ss_pred             EEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccC---cCCCE--EEEEeCCcccccccccccccc
Confidence            9999877  3456777888877776543333445667889999983221   12222  22322211 100  0      


Q ss_pred             ----EccccccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        359 ----PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       359 ----~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                          .........+.|.++...+.+.|+|.|.|..|..
T Consensus       158 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          158 MNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA  195 (212)
T ss_dssp             SSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             cCceeEecCCCceEEEEecChhhCcEEEEEEccccCCc
Confidence                0011234578999999999999999999999875

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.26  E-value=1.5e-11  Score=97.90  Aligned_cols=85  Identities=18%  Similarity=0.225  Sum_probs=68.6

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +|.|. ..|+++.+.+|+.|.|.|.+.|.|.|.|.|+|++..+.. .++|.....+                        
T Consensus        15 ~p~f~-~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~------------------------   69 (116)
T 2kkq_A           15 APMFI-YKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN------------------------   69 (116)
T ss_dssp             CCCBS-SCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECT------------------------
T ss_pred             CCeEE-eCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCC------------------------
Confidence            56776 459999999999999999999999999999999998874 4555433211                        


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                         .....|.|.++...|.|.|.|.|.|..|...
T Consensus        70 ---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~  100 (116)
T 2kkq_A           70 ---TGRVTLLIKDVNKKDAGWYTVSAVNEAGVTT  100 (116)
T ss_dssp             ---TCEEEEEEEEECGGGCEEEEEEEEETTEEEE
T ss_pred             ---CCeEEEEECCCCcccCEEEEEEEEcCCCeEE
Confidence               0123799999999999999999999988654

>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin type-III, beta-N-acetylglucosaminidase, cohesin, hydrolase; 1.80A {Clostridium perfringens}

Probab=99.26  E-value=3.3e-11  Score=100.52  Aligned_cols=111  Identities=18%  Similarity=0.233  Sum_probs=83.4

Q ss_pred             ceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEEc-cCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeE
Q psy12426        366 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITA-KDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQY  444 (616)
Q Consensus       366 ~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~~-~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y  444 (616)
                      .++.+.++. |..|.+.....           +..+.. ......|.||.++++..++.++++|+|++|....+  |.+|
T Consensus       118 ts~~vgdg~-g~~~~~~~~~k-----------~v~i~~~tq~ev~p~Pp~NL~At~VT~tSVtLsW~aP~~~~G--I~gY  183 (238)
T 2w1n_A          118 TNSSVGDGE-GLVHEIAGTEK-----------TVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEG--LEGY  183 (238)
T ss_dssp             EEEEEECTT-SCEEECBCEEE-----------EEEEECCCCCCCCCCCCEEEEEEEECSSCEEEEEECCSCCTT--EEEE
T ss_pred             eeEEEecCC-CcEEEeeccce-----------eeeeccCCCCcCccCCCCceEEEEccCCeEEEEecCCCCCCC--ceeE
Confidence            446666777 77777665421           111111 11234678999999999999999999998876444  9999


Q ss_pred             EEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCC
Q psy12426        445 IIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS  495 (616)
Q Consensus       445 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s  495 (616)
                      +|++..     .....++.+.++|++.+|+|+|.|.|+|.|.|..|.+...
T Consensus       184 ~ly~~g-----~~v~~v~~~~tsyt~~gLk~~TeYsF~V~A~d~~G~~Ss~  229 (238)
T 2w1n_A          184 ILYKDG-----KKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSK  229 (238)
T ss_dssp             EEEETT-----EEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCBCCC
T ss_pred             EEEeCC-----ceeEEeeccceEEEecCCCCCCEEEEEEEEEeCCCCcccc
Confidence            999854     3445667778899999999999999999999999987654

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.26  E-value=2.6e-11  Score=92.31  Aligned_cols=89  Identities=31%  Similarity=0.509  Sum_probs=72.7

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECC--eeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--ITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      +|.| ...+..+.+..|+.+.|.|.+.|.|.|.+.|++++  ..+.....  +........|.|.++...|+|.|+|.|.
T Consensus         2 ~P~i-~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   78 (93)
T 1wit_A            2 KPKI-LTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL--VDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEE-CCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSE--EEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeE-EcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEE--EEecCCEEEEEECCCChhcCEEEEEEEE
Confidence            4666 33456788999999999999999999999999999  77654432  3333455789999999999999999999


Q ss_pred             cCCCCceeeEEEEE
Q psy12426        293 NSWGTDKGTAKVTV  306 (616)
Q Consensus       293 n~~g~~~~~~~l~v  306 (616)
                      |..|.....+.|.|
T Consensus        79 N~~G~~~~~~~l~V   92 (93)
T 1wit_A           79 NELGEDEAIFEVIV   92 (93)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             cCCCeEEEEEEEEE
Confidence            99998877777765

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.25  E-value=6.7e-11  Score=108.13  Aligned_cols=123  Identities=10%  Similarity=-0.034  Sum_probs=75.2

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCCCC---CCCCCCCCCEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEeee-c
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKGGP---GEPSDPTAPHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-P  244 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~g~---~~~s~~~~~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p  244 (616)
                      ..|.|.+++.+|.|.|.|.+.|..+.   ...... ..+.+..   ...+|.+....+....+..|+.+.|.|.+.+. |
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~-~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P  150 (238)
T 1bec_A           72 FSLILELATPSQTSVYFCASGGGRGSYAEQFFGPG-TRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFP  150 (238)
T ss_dssp             EEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCC-EEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBS
T ss_pred             EEEEEecCCcccCEEEEEEEecCCCCccccccCCC-EEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeC
Confidence            47999999999999999999987421   101111 1233332   12466664443444445578999999999986 6


Q ss_pred             Cc-eeEEEECCeeecccCcEE---E-EecCC---ceEEEecCCCCC-CcEEEEEEEEcCC
Q psy12426        245 IP-TKEWLCNDITIISKDRFK---I-VNDDK---STKLKVFDSKRG-DSGIYTLAVKNSW  295 (616)
Q Consensus       245 ~~-~~~W~~~~~~~~~~~~~~---~-~~~~~---~~~l~i~~l~~~-~~g~y~c~a~n~~  295 (616)
                      .+ .+.|++++..+..+....   . ..++.   ...|.|...... +.+.|+|.|.|..
T Consensus       151 ~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          151 DHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             CCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred             CCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence            54 999999998876442211   1 11221   012333322222 3678999999963

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.25  E-value=2.7e-11  Score=93.06  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=67.9

Q ss_pred             CCCCCceEecCCCeEEEEEEEeee-cCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGE-PVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      ..+|.++.+.+|+.+.|.|.+.|. |.|.|.|+|++..+...+.|.....+                            .
T Consensus         5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~----------------------------~   56 (97)
T 2bk8_A            5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYED----------------------------G   56 (97)
T ss_dssp             ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEET----------------------------T
T ss_pred             eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcC----------------------------C
Confidence            467899999999999999999997 99999999999988766676554211                            1


Q ss_pred             CCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                      ...|.|.++...|.|.|.|.|.|..|....
T Consensus        57 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~   86 (97)
T 2bk8_A           57 VAILYVKDITKLDDGTYRCKVVNDYGEDSS   86 (97)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             eEEEEEecCChhhCeEEEEEEECCCCeEeE
Confidence            347999999999999999999999886543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.25  E-value=5.4e-11  Score=108.31  Aligned_cols=166  Identities=19%  Similarity=0.199  Sum_probs=113.2

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEE-EecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.. ........|.|.++...|.|.|+|.+.|..|......
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~  106 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY  106 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccE
Confidence            668899999999999999999999999999998765433211 1122335899999999999999999999988887788


Q ss_pred             EEEEecCCCCCCC-----CccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEe--CC------CCCEE-Ec-----ccc
Q psy12426        303 KVTVLDIPSPPEG-----PLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMD--ME------TGRWV-PM-----GDV  363 (616)
Q Consensus       303 ~l~v~~~p~~p~~-----~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~--~~------~~~~~-~~-----~~~  363 (616)
                      .+.+...+..+..     +.......+..+.|.|......    ...+.+.+..  .+      ..... ..     ...
T Consensus       107 ~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p----~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  182 (231)
T 3ojm_B          107 HLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDA----QPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS  182 (231)
T ss_dssp             EEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSS----CCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCS
T ss_pred             EEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCC----CCEEEEEECCCCCCccccCCCcceEeEecccccccC
Confidence            8888765432210     1123445677899999753322    1222222210  10      00000 00     012


Q ss_pred             ccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        364 SGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       364 ~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ....+.|.++...+.+.|+|.|.|..|...
T Consensus       183 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  212 (231)
T 3ojm_B          183 NAEVLALFNVTEADAGEYICKVSNYIGQAN  212 (231)
T ss_dssp             CTTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CccEEEEecCCHHHCeEEEEEEEeccceEe
Confidence            235689999999999999999999998753

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=8.5e-12  Score=99.91  Aligned_cols=83  Identities=17%  Similarity=0.240  Sum_probs=68.5

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||.|. ..+.++.+.+|+.+.|.|.+.|.|.|.|+|+|+|..+.. .++|...                           
T Consensus         8 pP~i~-~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~---------------------------   59 (118)
T 2eo9_A            8 PPVIR-QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL---------------------------   59 (118)
T ss_dssp             SCCCS-BCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEE---------------------------
T ss_pred             CCEEE-cCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEc---------------------------
Confidence            57776 458999999999999999999999999999999988863 3443322                           


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                          ....|.|.++...|.|.|.|.|.|..|.....
T Consensus        60 ----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (118)
T 2eo9_A           60 ----ENGVLQIRYAKLGDTGRYTCIASTPSGEATWS   91 (118)
T ss_dssp             ----ETTEEEEESCCGGGCCCEEEEEECSSCEEEEE
T ss_pred             ----cCCEEEEccCCcCCCEEEEEEEEcCCCcEEEE
Confidence                13589999999999999999999999875443

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.25  E-value=3e-11  Score=95.33  Aligned_cols=103  Identities=18%  Similarity=0.192  Sum_probs=80.8

Q ss_pred             EEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCC---CCc-eEEEEEEEEeCCCCCEEEccccccceEEeccccCCCe
Q psy12426        303 KVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDG---GTD-ILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHD  378 (616)
Q Consensus       303 ~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~---~~~-i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~  378 (616)
                      .+.+..+|.+|..+ .+..+..+++.|+|.+|.+++   +.. |..|.|+..+.....|..+.....+.+++.+|.+++.
T Consensus         9 ~~~~~~pp~~P~~p-~v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~~~~~v~~~~~t~~~v~gL~p~t~   87 (120)
T 1wfu_A            9 EPHKVVPLSKPHPP-VVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTL   87 (120)
T ss_dssp             CCTTCCCCCCCCCC-BCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCE
T ss_pred             EEEeeCCCCCCCCc-eeceEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCCceEEEecCCccEEEECCCCCCCE
Confidence            34556677788764 567889999999999988776   555 9999999655566788887666567899999999999


Q ss_pred             EEEEEEEEecCcCCCCccccCCEEccCCCCC
Q psy12426        379 YNFRVKAVNKIGESLPLVCQSPITAKDPFGR  409 (616)
Q Consensus       379 y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~  409 (616)
                      |.|||+|.|..|.+.++   ..+.+.+...+
T Consensus        88 Y~frV~A~n~~G~s~~S---~~~~~~T~~~p  115 (120)
T 1wfu_A           88 YKFRLKVTSPSGEYEYS---PVVSVATTRES  115 (120)
T ss_dssp             EEEEEEEECSSSCEEEC---CCEEEECCCCC
T ss_pred             EEEEEEEECCCCCCCCC---ccEeeEcCCCC
Confidence            99999999999998874   44555554443

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=3.3e-12  Score=99.49  Aligned_cols=87  Identities=25%  Similarity=0.451  Sum_probs=72.3

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .+|.+|.++++..++.+++.|+|.+|.    +.+.+|+|+|+..++ .+.....+.+....++|.+|.|++.|.|+|+|+
T Consensus         6 ~~p~~P~~l~v~~~t~~si~lsW~~p~----g~i~~Y~v~y~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~   81 (105)
T 2ekj_A            6 SGRSPPSNLALASETPDSLQVSWTPPL----GRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAI   81 (105)
T ss_dssp             TTCCCCEEEEEEEEETTEEEEEEECCS----SCCSBBCBBCCCTTSCSCCCCBCCBTTSSEEEECSCCSSCCCBCBBCBB
T ss_pred             cCCCCCCceEEEeCCCCEEEEEEeCCC----CcceEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            578899999999999999999999873    368999999987654 222223456778999999999999999999999


Q ss_pred             cCCCCCCCCCCC
Q psy12426        487 NKGGPGEPSKAS  498 (616)
Q Consensus       487 n~~G~g~~s~~~  498 (616)
                      |..|.|+++...
T Consensus        82 ~~~g~g~~s~~~   93 (105)
T 2ekj_A           82 YAAGRSEAVSAT   93 (105)
T ss_dssp             CSSCBCCCBCCB
T ss_pred             eCCccCCccccE
Confidence            999999877643

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=4.8e-11  Score=92.24  Aligned_cols=93  Identities=20%  Similarity=0.319  Sum_probs=76.6

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecc-cCcEEEEecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      .+|.| ...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+...   ..|.|.++...|.|.|+|.|.
T Consensus         7 ~~P~i-~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~   82 (100)
T 2edj_A            7 GPPII-LQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ---GTLQIKNLRISDTGTYTCVAT   82 (100)
T ss_dssp             SSCEE-EECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTT---CCEEEESCCTTTCCEEEEEEE
T ss_pred             CCCEE-EeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCC---CEEEEccCCcccCEEEEEEEE
Confidence            45666 3446778899999999999999999999999999988763 344444333   379999999999999999999


Q ss_pred             cCCCCceeeEEEEEecCC
Q psy12426        293 NSWGTDKGTAKVTVLDIP  310 (616)
Q Consensus       293 n~~g~~~~~~~l~v~~~p  310 (616)
                      |..|.....+.|.|..+|
T Consensus        83 n~~g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           83 SSSGETSWSAVLDVTESG  100 (100)
T ss_dssp             CSSCCCBCCEEEEEESCC
T ss_pred             cCCCCEEEEEEEEEecCC
Confidence            999998888888887653

>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein, adnect antitumor, drug, engineered binding protein; HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*

Probab=99.24  E-value=2.7e-11  Score=95.31  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=65.9

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      +.|++|.++.+..++.+++.|+|.+|.    +.+.+|.|.|+..++ .+.....+++...+++|.+|.|++.|.|+|+|.
T Consensus         2 GvP~~P~~L~v~~~t~~Sv~lsW~~p~----g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~gL~P~T~Y~v~V~A~   77 (114)
T 3qwq_B            2 GVSDVPRDLEVVAATPTSLLISWDSGR----GSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYAV   77 (114)
T ss_dssp             ---CCCEEEEEEEEETTEEEEEEECCS----CCCSEEEEEEEESSCSSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEE
T ss_pred             CCCCCCCceEEEecCCCEEEEEEcCCc----CcccEEEEEEEECCCCCccEEEEeCCCcCEEEeCCCCCCCEEEEEEEEE
Confidence            578999999999999999999999763    358999999998765 333444566778999999999999999999999


Q ss_pred             cCCC
Q psy12426        487 NKGG  490 (616)
Q Consensus       487 n~~G  490 (616)
                      |..|
T Consensus        78 ~~~G   81 (114)
T 3qwq_B           78 TDHK   81 (114)
T ss_dssp             EEEE
T ss_pred             ECCc
Confidence            9999

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.23  E-value=6.8e-11  Score=91.21  Aligned_cols=93  Identities=30%  Similarity=0.549  Sum_probs=76.0

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC-cEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      +|.+ ...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.... ++.....+....|.|.++...|.|.|+|.|.|
T Consensus         5 ~P~~-~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            5 PPTF-KVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEE-EECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEE-EEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            4555 334567789999999999999999999999999999886554 44444455556899999999999999999999


Q ss_pred             CCCCceeeEEEEEec
Q psy12426        294 SWGTDKGTAKVTVLD  308 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~  308 (616)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999888888877753

>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}

Probab=99.23  E-value=4.2e-10  Score=100.44  Aligned_cols=182  Identities=16%  Similarity=0.131  Sum_probs=121.3

Q ss_pred             CCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc---cccceEEecccc--CCCeEEEEEEEEe
Q psy12426        313 PEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD---VSGTYTRAENLI--EGHDYNFRVKAVN  387 (616)
Q Consensus       313 p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~~~~~~i~~L~--~~~~y~~~v~a~n  387 (616)
                      |.+ +.+...... ..|.|+++... ......|.++|...+...|.....   ...+.+.|.++.  ....|.+||+|.+
T Consensus        12 P~n-v~~~s~n~~-~iL~W~p~~~~-~~~~~~Y~Vqy~~~~~~~W~~~~~C~~~~~~~Cdlt~~~~~~~~~Y~~RV~A~~   88 (221)
T 4doh_R           12 PAN-ITFLSINMK-NVLQWTPPEGL-QGVKVTYTVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYARVRAIW   88 (221)
T ss_dssp             CEE-EEEEEETTE-EEEEEECCCCS-SCCCCEEEEEEEETTSCCCEECGGGSSBSSSEEECTTTTCCSSCCEEEEEEEES
T ss_pred             Cce-eEEEEECCc-EEEEEcCCCCC-CCCCeEEEEEEEECCCCCceecccccCCCCCEEeCCCccccCCCCEEEEEEEEc
Confidence            444 666655444 46999975432 245789999998766677876533   456778888764  4668999999998


Q ss_pred             cCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCC----CCC--------cceeEEEEEeeCCCCc
Q psy12426        388 KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKD----GGS--------PISQYIIEKKPKYGPW  455 (616)
Q Consensus       388 ~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~----~~~--------~i~~Y~i~~~~~~~~~  455 (616)
                      +.+.+.++.. ..+... .....++|. +.+. ...++|.|.|.+|...    ++.        ....|.|.|.+.++..
T Consensus        89 g~~~S~w~~~-~~F~p~-~~t~igPP~-v~v~-~~~~~l~V~~~~P~~~~~~~~~~~~s~~~i~~~l~Y~V~y~~~~~~~  164 (221)
T 4doh_R           89 GTKCSKWAES-GRFYPF-LETQIGPPE-VALT-TDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNR  164 (221)
T ss_dssp             SSCBCCCEEC-CCBCHH-HHCBCCCCE-EEEE-CCSSCEEEEEECCBCCCSSTTSCCCBHHHHSTTCEEEEEEEETTTTE
T ss_pred             CCcccCCEec-Cceech-hhCccCCCE-EEEE-ECCCEEEEEEeCCCcccccCCCCceEHHHhcCceEEEEEEEECCCCc
Confidence            7776655431 111110 113445554 7766 5778999999987642    121        1358999998876532


Q ss_pred             eEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC--CCCCCCCCCCCCEEe
Q psy12426        456 EKACIVPANITATSVPDLKEGEEYEFRVIAVNK--GGPGEPSKASAPVTC  503 (616)
Q Consensus       456 ~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~--~G~g~~s~~~~~~~~  503 (616)
                      ......  ....+.|.+|.|++.|.|+|+|...  .|.|.+|....+.|.
T Consensus       165 ~~~~~~--~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~  212 (221)
T 4doh_R          165 TWSQCV--TNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTL  212 (221)
T ss_dssp             EEEEEE--CSSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEEEECC
T ss_pred             EEEEee--cCcEEEEecCCCCCcEEEEEEEEEcCCCCCCCCCCCEeEecC
Confidence            222222  3468999999999999999999975  688888876554443

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.8e-11  Score=96.66  Aligned_cols=100  Identities=22%  Similarity=0.344  Sum_probs=83.5

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEE-ecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      .+|.|. ..+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....+.... .......|.|.++...|.|.|+|.|.
T Consensus         8 ~~P~i~-~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            8 FRPHFL-QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCEEE-ECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCcEE-eCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            456663 4457789999999999999999999999999999887765544433 33445789999999999999999999


Q ss_pred             cCCCCceeeEEEEEecCCCCCC
Q psy12426        293 NSWGTDKGTAKVTVLDIPSPPE  314 (616)
Q Consensus       293 n~~g~~~~~~~l~v~~~p~~p~  314 (616)
                      |..|.....+.|.|..+|.+|.
T Consensus        87 n~~g~~~~~~~l~V~~~p~~P~  108 (110)
T 2dm3_A           87 NRAGQNSFSLELVVAAKESGPS  108 (110)
T ss_dssp             CSSCEEEECCEEEEECCCCSSS
T ss_pred             CCCCEEEEEEEEEEeCCCCCCC
Confidence            9999999999999999888775

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.23  E-value=1.2e-10  Score=106.11  Aligned_cols=131  Identities=12%  Similarity=0.000  Sum_probs=75.9

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCCC------CCCCCCCCEEec-cccCCCceeccCCcceEEEcCCeEEEEEEEeee
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGPG------EPSDPTAPHIAR-AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE  243 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~------~~s~~~~~~~~~-~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~  243 (616)
                      ...|.|.+++++|.|.|.|.+.+..+..      .... ...+.+. ....+|.+....+ ...+..|+.+.|.|.+.+.
T Consensus        82 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~-~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~~~  159 (232)
T 3qhz_H           82 QVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGR-GTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDY  159 (232)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECC-CEEEEECSSCCBCCEEEEECC--------CEEEEEEEEEEE
T ss_pred             EEEEEECcCChhhCEEEEEEEeeccCccccccceeeCC-CeEEEEecCCCCCCEEEEecc-cccccCCCcEEEEEEEeeE
Confidence            3479999999999999999998763211      0111 1123333 2334565532222 2345579999999999986


Q ss_pred             cC--ceeEEEECCeeecccCcEEEEecCC----ceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        244 PI--PTKEWLCNDITIISKDRFKIVNDDK----STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       244 p~--~~~~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      ++  ..+.|++++..+...........++    .+.|.|......+ |.|+|.+.|..+.......+
T Consensus       160 ~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l  225 (232)
T 3qhz_H          160 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRV  225 (232)
T ss_dssp             BSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             eCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEe
Confidence            54  3577999886432110000111111    1368888888778 99999999977665544443

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.23  E-value=7.4e-11  Score=91.67  Aligned_cols=89  Identities=22%  Similarity=0.353  Sum_probs=76.0

Q ss_pred             ccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC--cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       220 ~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      ...+.++.+.+|+++.|.|.+.+ |.+.+.|++++..+....  ++.+...+....|.|.++...|.|.|+|.|.|    
T Consensus        11 ~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----   85 (103)
T 1x44_A           11 TKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----   85 (103)
T ss_dssp             SBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----
T ss_pred             eccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----
Confidence            45567789999999999999987 779999999999987776  66877777778999999999999999999977    


Q ss_pred             ceeeEEEEEecCCCCC
Q psy12426        298 DKGTAKVTVLDIPSPP  313 (616)
Q Consensus       298 ~~~~~~l~v~~~p~~p  313 (616)
                      ....+.|.|..+|.++
T Consensus        86 ~~~~~~l~V~~~p~p~  101 (103)
T 1x44_A           86 GQSSAKLSVDLKSGPS  101 (103)
T ss_dssp             EEEEEEEEEECCCSCC
T ss_pred             CcEEEEEEEeCCCCCC
Confidence            5667788888877654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.23  E-value=3.1e-10  Score=100.21  Aligned_cols=167  Identities=7%  Similarity=-0.006  Sum_probs=107.9

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      .|.+... +.. .+.+|+.+.|.|.+.+ +.+.+.|++++..+.... ...........|.|.++...|+|.|+|.|.|.
T Consensus         5 ~P~i~~~-p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 3p2t_A            5 KPTLWAE-PGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR-QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSP   80 (196)
T ss_dssp             CCEEEEE-SCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE-ECCCSSSSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEcc-CCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc-cccccCCceEEEEeccCCcccCceEEEEEeCC
Confidence            4555433 344 7889999999999988 778999999998764321 11111234568999999999999999999998


Q ss_pred             CC--CceeeEEEEEecCCCCCCCCc--cceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC------EEEccccc
Q psy12426        295 WG--TDKGTAKVTVLDIPSPPEGPL--KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR------WVPMGDVS  364 (616)
Q Consensus       295 ~g--~~~~~~~l~v~~~p~~p~~~~--~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~------~~~~~~~~  364 (616)
                      .|  ..+..+.+.+...+.+|.-..  ......+..++|.|....     ....|  .|...+...      ........
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~-----~~~~~--~w~k~g~~~~~~~~~~~~~~~~~  153 (196)
T 3p2t_A           81 VGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRS-----PMDTF--LLCKERAAHPLLCLRSEHGAQQH  153 (196)
T ss_dssp             TEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEE-----EEEEE--EEEETTCCCGGGSEEEEEEEEEE
T ss_pred             CcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCC-----CCCEE--EEEeCCCcccceeecccccccCc
Confidence            87  335566777765443332100  112345778999997532     11223  333322211      00001123


Q ss_pred             cceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        365 GTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       365 ~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      ...+.|.++...+.+.|+|.|.|..+..
T Consensus       154 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~~  181 (196)
T 3p2t_A          154 QAEFPMSPVTSVHGGTYRCFSSHGFSHY  181 (196)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECGGGTT
T ss_pred             ceEEEeCCCcccCCCeEEEEEEcCCCCc
Confidence            4568999999999999999999988743

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1e-11  Score=95.95  Aligned_cols=82  Identities=22%  Similarity=0.376  Sum_probs=65.9

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|.. .+.++.+.+|+.+.|.|.+.|.|.|.|.|+|+|..+.....+ -                             
T Consensus        11 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~-~-----------------------------   59 (99)
T 2yr3_A           11 APSFSS-VLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST-C-----------------------------   59 (99)
T ss_dssp             EEEEEE-CCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCE-E-----------------------------
T ss_pred             CCceee-cCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceE-e-----------------------------
Confidence            466664 488999999999999999999999999999999887632111 0                             


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                       ......|.|.++.+.|.|.|.|.|.|..|....
T Consensus        60 -~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~   92 (99)
T 2yr3_A           60 -EAGVAELHIQDALPEDHGTYTCLAENALGQVSC   92 (99)
T ss_dssp             -ETTEEEEEECSCCTTCCBCEEEEEECSSCEEEE
T ss_pred             -eCCeEEEEECCCChhhCEEEEEEEEECCCeEEE
Confidence             112357999999999999999999999986543

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=7.3e-11  Score=91.95  Aligned_cols=84  Identities=15%  Similarity=0.240  Sum_probs=73.8

Q ss_pred             eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      +.+..|+.+.|.|.+.+.|.+ +.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..    ..+.+.
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~----~~~~l~   94 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVS----AFFGVT   94 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCC----CCEEEE
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCce----EEEEEE
Confidence            788999999999999999998 999999999887788888777777899999999999999999998863    367788


Q ss_pred             EecCCCCCC
Q psy12426        306 VLDIPSPPE  314 (616)
Q Consensus       306 v~~~p~~p~  314 (616)
                      |..+|.+|.
T Consensus        95 V~~~P~pp~  103 (104)
T 2e6p_A           95 VQDPSGPSS  103 (104)
T ss_dssp             EECCCCSSC
T ss_pred             EcCCCCCcC
Confidence            888877664

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.22  E-value=8.8e-11  Score=104.39  Aligned_cols=162  Identities=14%  Similarity=0.013  Sum_probs=106.8

Q ss_pred             cceEEEcCCeEEEEEEEeeecC-----ceeEEEE-CCeeecccCcEEEEec---CCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPI-----PTKEWLC-NDITIISKDRFKIVND---DKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~-----~~~~W~~-~~~~~~~~~~~~~~~~---~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      ..+.+..|+.+.|.|.+.+.|.     +.+.|++ ++.......+..+...   .....|.|.+++..|.|.|+|.+.|.
T Consensus        10 ~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   89 (202)
T 3bp6_B           10 EVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICG   89 (202)
T ss_dssp             SEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeC
Confidence            4578999999999999999886     8999999 4444433455554432   14468999999999999999999998


Q ss_pred             CCCceeeEEEEEecCCCCCCCCccc-eeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc---cccccceEEe
Q psy12426        295 WGTDKGTAKVTVLDIPSPPEGPLKP-SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM---GDVSGTYTRA  370 (616)
Q Consensus       295 ~g~~~~~~~l~v~~~p~~p~~~~~~-~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~---~~~~~~~~~i  370 (616)
                      .|.....+.|.+..++..|.  +.+ ....+..+.|.|.....    +..  .+.|...+.......   .......+.+
T Consensus        90 ~~~~~~~~~l~V~~~~~~p~--~~~~~~~~g~~v~l~C~~~g~----P~p--~v~W~~~~~~~~~~~~~~~~~~~~~~~i  161 (202)
T 3bp6_B           90 AAWDYKYLTVKVKASYMRID--TRILEVPGTGEVQLTCQARGY----PLA--EVSWQNVSVPANTSHIRTPEGLYQVTSV  161 (202)
T ss_dssp             TEEEEEEEEEEEEBCCCCEE--EEEEECTTTCCEEEEEEEEEB----SCC--EEEETTCCSCCEEEEEECTTSCEEEEEE
T ss_pred             CCcceEEEEEEecCCCCccc--EEEEecCCCCeEEEEEEcccc----CCc--eEEEEeCCCCccCceeeCCCCCEEEEEE
Confidence            88777888888887665443  222 33456778888875221    111  233332222111111   1111233455


Q ss_pred             ccccCCCeEEEEEEEEecCcCCC
Q psy12426        371 ENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       371 ~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ..+...+.+.|.|.|.|..|...
T Consensus       162 ~~v~~~d~G~Y~C~a~N~~g~~~  184 (202)
T 3bp6_B          162 LRLKPQPSRNFSCMFWNAHMKEL  184 (202)
T ss_dssp             EEECCCTTCCEEEEEEETTTTEE
T ss_pred             EEEEcCCCCEEEEEEEcCCcccc
Confidence            57777788899999999998653

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.22  E-value=1.3e-11  Score=96.58  Aligned_cols=78  Identities=13%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|. ..++++.+.+|+++.|.|.+.|.|.| |+|+|+|..+...++|.....                          
T Consensus         8 ~p~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~--------------------------   59 (106)
T 2dlt_A            8 QLEVL-QDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHV--------------------------   59 (106)
T ss_dssp             CCCEE-ECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEE--------------------------
T ss_pred             CCEEe-cCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEe--------------------------
Confidence            45555 55899999999999999999999998 999999999887777765421                          


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                        .....|.|.++...|.|.|.|.|.|.
T Consensus        60 --~~~~~L~I~~v~~~D~G~Y~C~a~n~   85 (106)
T 2dlt_A           60 --GRFHKLVIDDVRPEDEGDYTFVPDGY   85 (106)
T ss_dssp             --TTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred             --CCEEEEEECCCCcCCCEEEEEEEccC
Confidence              12357999999999999999999987

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.22  E-value=6.4e-11  Score=92.32  Aligned_cols=84  Identities=18%  Similarity=0.353  Sum_probs=69.1

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCC---------ceEeEeecCCccEEEcCCCCCCC
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP---------WEKACIVPANITATSVPDLKEGE  477 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~---------~~~~~~~~~~~~~~~l~~L~p~t  477 (616)
                      ...|.+|.+|++..++.++++|+|.+|.    +.+.+|+|+|...++.         ......++++..+++|.+|.|++
T Consensus         6 ~~~pp~p~~L~v~~~T~~Si~LsW~~p~----g~v~~Y~i~y~~~~~~~~e~~~~~~~~~~~~v~~~~t~~~l~gL~PgT   81 (112)
T 2cui_A            6 SGSRPRLSQLSVTDVTTSSLRLNWEAPP----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGT   81 (112)
T ss_dssp             CCCCCCCCCCEEESCCSSCEEEECCCCT----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTC
T ss_pred             CCCCCCCCceEEEeecCCeEEEEECCCC----CCccEEEEEEEeCCCCccccccccCcceEEEcCCCcCEEEeCCCCCCC
Confidence            3567889999999999999999999763    2588999999876542         13345667788999999999999


Q ss_pred             eEEEEEEEEcCCCCCCC
Q psy12426        478 EYEFRVIAVNKGGPGEP  494 (616)
Q Consensus       478 ~Y~~~v~a~n~~G~g~~  494 (616)
                      .|.|+|+|++..|.|.+
T Consensus        82 ~Y~~~V~A~~~~~~s~p   98 (112)
T 2cui_A           82 LYSLTLYGLRGPHKADS   98 (112)
T ss_dssp             EEEEEEEEECSSSEEEE
T ss_pred             EEEEEEEEEECCcccCC
Confidence            99999999998776653

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.21  E-value=1.2e-10  Score=102.38  Aligned_cols=160  Identities=16%  Similarity=0.220  Sum_probs=111.4

Q ss_pred             CcceEEEcCCeEEEEEEEeeec-CceeEEEE-CCeeec-ccCcEEEEe-cCCceEEEecCCCCCCcEEEEEEEEcCCC-C
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP-IPTKEWLC-NDITII-SKDRFKIVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSWG-T  297 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p-~~~~~W~~-~~~~~~-~~~~~~~~~-~~~~~~l~i~~l~~~~~g~y~c~a~n~~g-~  297 (616)
                      +.+..+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+. ...++.+.. ......|.|.++...|.|.|+|.+.|..| .
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   88 (191)
T 1epf_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   88 (191)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcc
Confidence            4667899999999999999987 78999999 887776 345555443 35567999999999999999999999874 4


Q ss_pred             ceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC-------CCCEEEccccccceEEe
Q psy12426        298 DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME-------TGRWVPMGDVSGTYTRA  370 (616)
Q Consensus       298 ~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~-------~~~~~~~~~~~~~~~~i  370 (616)
                      ....+.+.+..+|.....+.......+..+.|.|......    ...  +.|...+       ......   .....+.|
T Consensus        89 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p----~~~--v~W~~~~~~~~~~~~~~~~~---~~~~~L~i  159 (191)
T 1epf_A           89 SEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL----PPT--IIWKHKGRDVILKKDVRFIV---LSNNYLQI  159 (191)
T ss_dssp             EEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSS----CCE--EEEEETTEEGGGGCCTTEEE---CTTSCEEE
T ss_pred             eEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCC----CCE--EEEEECCEEeeccCCceEEE---ecCCeEEE
Confidence            5666777777665433222223445677888999864322    122  2232211       111111   12336899


Q ss_pred             ccccCCCeEEEEEEEEecCcC
Q psy12426        371 ENLIEGHDYNFRVKAVNKIGE  391 (616)
Q Consensus       371 ~~L~~~~~y~~~v~a~n~~g~  391 (616)
                      .++...+.+.|+|.|.|..|.
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~~~  180 (191)
T 1epf_A          160 RGIKKTDEGTYRCEGRILARG  180 (191)
T ss_dssp             TTCCGGGCEEEEEEEEEGGGT
T ss_pred             CCCChhhCEEEEEEEEEecce
Confidence            999999999999999997754

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.21  E-value=1e-11  Score=98.29  Aligned_cols=89  Identities=13%  Similarity=0.055  Sum_probs=62.2

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeee---cCCeeeeeeCCee-eee--ccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGE---PVPHVDWRAGGNP-LNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~---P~p~v~W~~~~~~-l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      +.+.|+++.|.+|++++|.|.+.|.   |.|.|+|||++.. +..  ...+.-....                      .
T Consensus        10 F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~----------------------~   67 (126)
T 2dav_A           10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF----------------------E   67 (126)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEE----------------------E
T ss_pred             EEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEcccc----------------------c
Confidence            3456899999999999999998875   8999999997421 110  1222221100                      0


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ........+|.|.++.+.|.|.|+|.|.|..|.....
T Consensus        68 ~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~  104 (126)
T 2dav_A           68 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCS  104 (126)
T ss_dssp             TTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEEC
T ss_pred             cccccceEEEEEccCCcccCEEEEEEEEeCCCcEEEE
Confidence            0001123689999999999999999999998876555

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=2.2e-10  Score=90.21  Aligned_cols=96  Identities=29%  Similarity=0.412  Sum_probs=80.2

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc--cccceEEeccccCCCeEEEEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      .+|.+|.+ +.+.....+.+.|+|.+|..+++..+.+|.|+++..+...|..+..  .....+.+.+|.+++.|.|+|+|
T Consensus         6 ~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   84 (110)
T 2yuw_A            6 SGTSPPTL-LTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKA   84 (110)
T ss_dssp             CCSCCCEE-EEEEEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTCSSEEECCSSCCCSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCCc-cEEEeccCCeEEEEECCCCCCCCCCccEEEEEEEECCCccceEeccccCccCEEEECCCCCCCEEEEEEEE
Confidence            35666665 6777888899999999988777778999999999887788988754  35778999999999999999999


Q ss_pred             EecCcCCCCccccCCEEcc
Q psy12426        386 VNKIGESLPLVCQSPITAK  404 (616)
Q Consensus       386 ~n~~g~~~~~~~s~~~~~~  404 (616)
                      .|..|.+.++..+..+++.
T Consensus        85 ~n~~G~s~~S~~~~~v~~~  103 (110)
T 2yuw_A           85 VNAAGASEPKYYSQPILVK  103 (110)
T ss_dssp             EETTEECCCEECSSCEECC
T ss_pred             EcCCcCCCCcCCCCCEEec
Confidence            9999999888766666543

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.21  E-value=6.5e-11  Score=109.96  Aligned_cols=243  Identities=12%  Similarity=0.014  Sum_probs=81.1

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCe-eeeee----C-----Cee---eee-----ccceEEEeecCCCCCce-eEe-eec
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPH-VDWRA----G-----GNP---LNL-----RPIWEKCAQTEGDTPKG-KVL-DLI   68 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~----~-----~~~---l~~-----~G~Y~C~a~n~~~~~~~-~v~-~~~   68 (616)
                      |++..|.+|+.+.|+|.+. .+.|. +.|.-    .     |..   +..     .|.|.|.+... +.... .+. .+.
T Consensus         6 P~~~~V~~G~sv~l~Cs~~-c~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~~~y~C~~~~~-~~~~~~~v~l~V~   83 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTS-CDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCP-DGQSTAKTFLTVY   83 (291)
T ss_dssp             CSEEEECTTCEEEEEEEEC-CSSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCSCCCCEEEEECS-SCEEEEECEEEEC
T ss_pred             CCccEEcCCCeEEEEEeCC-CCCCccceEEecCCCcccccCCCceEEEEEEecccCCeEEEEEEcC-CccEEEEEEEEEe
Confidence            6788999999999999986 45555 88861    1     111   111     68999998643 22111 111 110


Q ss_pred             cCCccceeeccccCCCCCceEe--cCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecCCCceeeeecCccc--ccEEE
Q psy12426         69 EGNHPIWEKCAQTEGDTPKGKV--LDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLK--DSIYE  144 (616)
Q Consensus        69 ~~~~p~w~~~~~~~~~~~~l~i--~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~~p~~~~~~g~p~~--~~~~~  144 (616)
                      .  .|.          .-.+..  ..+..|+.+.+.|.+.+                           +.|..  .++|+
T Consensus        84 ~--~P~----------~v~I~~~~~~~~~G~~~~LtC~v~g---------------------------~~P~~~l~itW~  124 (291)
T 1mq8_A           84 W--TPE----------RVELAPLPSWQPVGKNLTLRCQVEG---------------------------GAPRANLTVVLL  124 (291)
T ss_dssp             B--CCS----------CCCBCCCCSBCCSSCCCEEEEEECC---------------------------CBSTTTEEEEEE
T ss_pred             c--CCC----------CCEEecCCccccCCCCEEEEEEecC---------------------------ccCCCCcEEEEE
Confidence            0  000          111111  22778999999999872                           22333  36887


Q ss_pred             EeeccCcccccccCCCceEecccCCCCCeEEeecccCCCeEEEEEEEEeCCCC-CC-C-CCCCCCEEeccccCCCcee-c
Q psy12426        145 QLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP-GE-P-SDPTAPHIARAKKVSPYIN-R  220 (616)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~-~~-~-s~~~~~~~~~~~~~~P~~~-~  220 (616)
                      +  .+..+.    ..    ..........|.+.....++...|+|+|.|..+. +. . ..............|+... .
T Consensus       125 k--g~~~l~----~~----~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~  194 (291)
T 1mq8_A          125 R--GEKELK----RE----PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQL  194 (291)
T ss_dssp             S--SSSEEE----EE----ECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC----------
T ss_pred             E--CCEEee----cc----cCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCcee
Confidence            7  422211    00    0011112235667777777778999999998763 21 0 0011112222222222211 1


Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCc---eeEEEECCeeecccCcEEEEecCCceEEEecCC---CC--CCcEEEEEEEE
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIP---TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS---KR--GDSGIYTLAVK  292 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l---~~--~~~g~y~c~a~  292 (616)
                      ..  ...+.+|+.+.|.|.+.|.+++   .+.|.++|..+....    ...++  .+.+..+   ..  ++.|.|+|.|.
T Consensus       195 ~~--p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~----~~~g~--~~~~~~~~~~~~~~~~~~~~~C~~~  266 (291)
T 1mq8_A          195 VS--PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV----TYGND--SFSAKASVSVTAEDEGTQRLTCAVI  266 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cC--CcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCcee----eecCC--eEEEEEecceeEcCCCCEEEEEEEE
Confidence            11  2257799999999999998554   699999998775321    11121  2333332   23  34677778888


Q ss_pred             cCCCCceeeEEEEEecCC
Q psy12426        293 NSWGTDKGTAKVTVLDIP  310 (616)
Q Consensus       293 n~~g~~~~~~~l~v~~~p  310 (616)
                      +..........++|..-|
T Consensus       267 ~~~~~~~~~~~l~v~~~~  284 (291)
T 1mq8_A          267 LGNQSQETLQTVTIYSFP  284 (291)
T ss_dssp             ------------------
T ss_pred             eCCcceEEEEEEEEEcCC
Confidence            754445555556665543

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=7.4e-12  Score=98.90  Aligned_cols=87  Identities=20%  Similarity=0.400  Sum_probs=68.6

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|.. .+.++.+.+|+.+.|.|.+.|.|.|.|+|+|++..+.....+.-...                          
T Consensus         9 ~P~i~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~--------------------------   61 (110)
T 2dm3_A            9 RPHFLQ-APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVR--------------------------   61 (110)
T ss_dssp             CCEEEE-CCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEEC--------------------------
T ss_pred             CCcEEe-CCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEe--------------------------
Confidence            577764 48899999999999999999999999999999988874333222210                          


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                       ......|.|.++...|.|.|.|.|.|..|.....
T Consensus        62 -~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   95 (110)
T 2dm3_A           62 -ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFS   95 (110)
T ss_dssp             -TTSCEEEEESSCCGGGCSBBCEEEECSSCEEEEC
T ss_pred             -cCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEE
Confidence             1113589999999999999999999999875443

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic}

Probab=99.21  E-value=4.2e-11  Score=91.59  Aligned_cols=80  Identities=23%  Similarity=0.406  Sum_probs=66.3

Q ss_pred             CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCC
Q psy12426        412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG  490 (616)
Q Consensus       412 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G  490 (616)
                      +|.++.+..++.+++.|+|.+|..    .+.+|.|+|+..+. .......+++...+++|.+|.|++.|.|+|+|.|..|
T Consensus         4 ~P~~l~v~~~t~~Sv~lsW~~p~~----~i~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~l~gL~P~t~Y~~~V~A~~~~g   79 (98)
T 3tes_A            4 APKNLVVSEVTEDSLRLSWTAPDA----AFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVKGGH   79 (98)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCTT----SCSEEEEEEEETTBCSCCEEEEEETTCSEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCceEEEecCCCeEEEEecCCcC----ccceEEEEEEECCCCCceEEEEcCCCcCEEEECCCCCCCEEEEEEEEEeCCc
Confidence            677899999999999999998742    58999999998763 2223345567789999999999999999999999999


Q ss_pred             CCCCC
Q psy12426        491 PGEPS  495 (616)
Q Consensus       491 ~g~~s  495 (616)
                      .|++.
T Consensus        80 ~S~p~   84 (98)
T 3tes_A           80 RSNPL   84 (98)
T ss_dssp             EBCCE
T ss_pred             ccCCE
Confidence            88754

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.21  E-value=1.5e-10  Score=104.27  Aligned_cols=176  Identities=18%  Similarity=0.175  Sum_probs=112.2

Q ss_pred             cCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC--cEEEEecCCc--eEEEecCCCCCCcEEEE
Q psy12426        213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKS--TKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       213 ~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~--~~l~i~~l~~~~~g~y~  288 (616)
                      ..+|.|. ..+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ...+...+..  ..+.|.++...|.|.|+
T Consensus         7 ~~~P~i~-~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            7 YQSPRII-EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCCCEEE-ECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred             cCCCEEe-cCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence            3566664 44667889999999999999999999999999998876532  2222222221  12368899999999999


Q ss_pred             EEEEcCCCCc-eeeEEEEEec-CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCC-----CE--EE
Q psy12426        289 LAVKNSWGTD-KGTAKVTVLD-IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG-----RW--VP  359 (616)
Q Consensus       289 c~a~n~~g~~-~~~~~l~v~~-~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~-----~~--~~  359 (616)
                      |.+.|..|.. .....+.+.. +|.....+.......+..+.|.|......   +...+  .|...+..     ..  ..
T Consensus        86 C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~---p~~~v--~W~~~g~~~~~~~~~~~~~  160 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGI---PEPTL--IWIKDGVPLDDLKAMSFGA  160 (217)
T ss_dssp             EEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEE---SCCEE--EEEETTEEECCCCCC---C
T ss_pred             EEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCC---CCCeE--EEEECCcCCCccccccccc
Confidence            9999988765 3355565544 23222222233445677899999752211   11222  22221100     00  00


Q ss_pred             cc---ccccceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426        360 MG---DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       360 ~~---~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~  394 (616)
                      ..   ......+.|.++...+.+.|+|.|.|..|....
T Consensus       161 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  198 (217)
T 2vr9_A          161 SSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRES  198 (217)
T ss_dssp             CCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEEC
T ss_pred             CCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceecc
Confidence            00   012346899999999999999999999987543

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.21  E-value=5.5e-11  Score=94.05  Aligned_cols=84  Identities=19%  Similarity=0.254  Sum_probs=67.1

Q ss_pred             EEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-----CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCC
Q psy12426        419 TDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-----PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGE  493 (616)
Q Consensus       419 ~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-----~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~  493 (616)
                      ..++.++|.|+|..+ . .++.|.+|.|.|+..+.     .|...........+++|.+|+|++.|.|+|+|+|..|.|+
T Consensus        25 ~a~sstsi~vsW~~~-~-~~g~i~gY~V~Y~~~~~~~~~~~~~~~~v~~~~~~~~~l~~L~p~T~Y~~~V~A~n~~G~Gp  102 (120)
T 1ujt_A           25 VVLTPTTVQVTWTVD-R-QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGM  102 (120)
T ss_dssp             CCCBTTEEEEEEEES-S-CCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCC
T ss_pred             EEccCceEEEEEccC-C-CCCcEeeEEEEEEECCCCCCCCccEEEEecCCCcCEEEECCCCCCCEEEEEEEEECCCccCC
Confidence            445789999999953 3 34469999999998753     5765544456678999999999999999999999999999


Q ss_pred             CCCCCCCEEec
Q psy12426        494 PSKASAPVTCK  504 (616)
Q Consensus       494 ~s~~~~~~~~~  504 (616)
                      +|....+.|.+
T Consensus       103 ~S~~v~~~T~e  113 (120)
T 1ujt_A          103 DSESKTVRTTE  113 (120)
T ss_dssp             CCCCEEEEECS
T ss_pred             CCCCEEEECCC
Confidence            99876555543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.20  E-value=2.9e-11  Score=94.41  Aligned_cols=93  Identities=22%  Similarity=0.421  Sum_probs=80.6

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.| ...+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++...|.|.|+|.|.|
T Consensus        13 ~~~~i-~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   91 (106)
T 1nct_A           13 LAARI-LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN   91 (106)
T ss_dssp             CCCEE-EECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred             CCCEE-EECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence            44555 44567889999999999999999999999999999988877888887766678999999999999999999999


Q ss_pred             CCCCceeeEEEEEe
Q psy12426        294 SWGTDKGTAKVTVL  307 (616)
Q Consensus       294 ~~g~~~~~~~l~v~  307 (616)
                      ..|.....+.|.|.
T Consensus        92 ~~G~~~~~~~l~V~  105 (106)
T 1nct_A           92 SEGKQEAEFTLTIQ  105 (106)
T ss_dssp             SSCBCCEEEEEEEC
T ss_pred             CCCeEEEEEEEEEE
Confidence            99998888777764

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.20  E-value=2.6e-11  Score=95.32  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=60.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|.. .+.++.+.+|+.+.|.|.+.|.|.|.|.|+|++..+.....+...                            
T Consensus        10 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~----------------------------   60 (108)
T 3kvq_A           10 APTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK----------------------------   60 (108)
T ss_dssp             -CCCBS-CCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEE----------------------------
T ss_pred             CCceec-CCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEe----------------------------
Confidence            577764 488999999999999999999999999999999888754443222                            


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                        .....|.|.++...|.|.|.|.|.|..|.....
T Consensus        61 --~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   93 (108)
T 3kvq_A           61 --DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE   93 (108)
T ss_dssp             --TTTTEEEECSCCGGGCEEEEEEEC----CEEEE
T ss_pred             --CCCcEEEEeecCcccCEEEEEEEEeCCCceEEE
Confidence              124679999999999999999999988865443

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.20  E-value=1.8e-10  Score=89.86  Aligned_cols=100  Identities=17%  Similarity=0.205  Sum_probs=78.2

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEe
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVN  387 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n  387 (616)
                      .+|.+|.+ +.+.....+++.|+|.+|.. ++..|.+|.|+++.... .|..........+.+.+|.+++.|.|+|+|.|
T Consensus         6 ~~P~~P~~-~~~~~~s~~sv~l~W~~p~~-~g~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~n   82 (106)
T 1x4x_A            6 SGPDQCKP-PQVTCRSATCAQVNWEVPLS-NGTDVTEYRLEWGGVEG-SMQICYCGPGLSYEIKGLSPATTYYCRVQALS   82 (106)
T ss_dssp             CSCCCCCC-CCCEEEETTEEEEECCCCSC-SSSCCCEEEEEEESSTT-SCCEEEEESCSEEEEESCCSSCEEEEEEEEEC
T ss_pred             CCcCCCCC-CEEEEcCCCEEEEEEcCCCC-CCCcceEEEEEEEcCCC-ceEEEEeCCcceEEEcCCCCCCEEEEEEEEEc
Confidence            35667776 67888899999999998876 55689999999986542 33333334557899999999999999999999


Q ss_pred             cCcCCCCccccCCEEccCCCCCCCCC
Q psy12426        388 KIGESLPLVCQSPITAKDPFGRPDRP  413 (616)
Q Consensus       388 ~~g~~~~~~~s~~~~~~~~~~~p~~p  413 (616)
                      ..|.+.+   +..+.+.+...+|++|
T Consensus        83 ~~G~g~~---S~~v~~~T~~~~P~~~  105 (106)
T 1x4x_A           83 VVGAGPF---SEVVACVTPPSSGPSS  105 (106)
T ss_dssp             SSCCCCB---CCCEEEECCCCCSCCC
T ss_pred             CCcCCCC---cCCEEEECCCCCcCCC
Confidence            9999876   5667777777777665

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.20  E-value=3.8e-11  Score=109.78  Aligned_cols=130  Identities=14%  Similarity=0.047  Sum_probs=77.0

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCC-----------CCCCCCCCCEEec-cccCCCceeccCCcceEEEcCCeEEEEE
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGP-----------GEPSDPTAPHIAR-AKKVSPYINRDQLSDIKVRAGSNFEFDI  238 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~-----------~~~s~~~~~~~~~-~~~~~P~~~~~~~~~~~v~~g~~~~l~c  238 (616)
                      ...|.|.+++.+|+|.|.|.+.+..+.           ...... ..+.+. ....+|.+....+ ...+..|+.+.|.|
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~-t~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~l~C  162 (239)
T 3tv3_H           85 LVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRG-TLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGC  162 (239)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCC-EEEEECCCCCBCCEEEEECC-CCCC--TTEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCC-cEEeeccCCCcCCEEEEECC-ChhhccCCcEEEEE
Confidence            347999999999999999999875321           001111 123332 2334555532222 22344699999999


Q ss_pred             EEeee-cCc-eeEEEECCeeecccCcEEEEecCC----ceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426        239 NVIGE-PIP-TKEWLCNDITIISKDRFKIVNDDK----STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       239 ~~~~~-p~~-~~~W~~~~~~~~~~~~~~~~~~~~----~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                      .+.+. |.+ .+.|.+++..+...........+.    .+.|.|......+ |.|+|.+.|..+.......
T Consensus       163 ~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~  232 (239)
T 3tv3_H          163 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKR  232 (239)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred             EEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEE
Confidence            99985 433 588999886432111000111111    1367888888788 9999999997665544443

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.20  E-value=6.1e-11  Score=93.19  Aligned_cols=97  Identities=20%  Similarity=0.355  Sum_probs=69.7

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.+ ...+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+...  ...|.|.++...|.|.|+|.|.|
T Consensus         9 ~~P~~-~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~n   85 (108)
T 3kvq_A            9 VAPTI-TGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG--NRNLTIRRVRKEDEGLYTCQACS   85 (108)
T ss_dssp             --CCC-BSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETT--TTEEEECSCCGGGCEEEEEEEC-
T ss_pred             CCCce-ecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCC--CcEEEEeecCcccCEEEEEEEEe
Confidence            45666 3445778899999999999999999999999999988876666655433  35899999999999999999999


Q ss_pred             CCCCceeeEEEEEecCCCCC
Q psy12426        294 SWGTDKGTAKVTVLDIPSPP  313 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~~p~~p  313 (616)
                      ..|.....+.+.+..+|..+
T Consensus        86 ~~g~~~~~~~l~V~~~~~~~  105 (108)
T 3kvq_A           86 VLGCAKVEAFFIIEGAQEKT  105 (108)
T ss_dssp             ---CEEEEEEEEEEC-----
T ss_pred             CCCceEEEEEEEEeCCCccc
Confidence            99999999999998776544

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.20  E-value=1.3e-10  Score=91.84  Aligned_cols=84  Identities=19%  Similarity=0.290  Sum_probs=70.4

Q ss_pred             cCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecC-------CceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        230 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD-------KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       230 ~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      .+..+.|.|.+.|.|.|.++|++||..+..+.++.+....       ....|.|.++...|+|.|+|.|.|..|....++
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            4568889999999999999999999999877665433211       235899999999999999999999999999999


Q ss_pred             EEEEecCCCCC
Q psy12426        303 KVTVLDIPSPP  313 (616)
Q Consensus       303 ~l~v~~~p~~p  313 (616)
                      .+.+...|...
T Consensus        94 ~l~v~~~P~~~  104 (126)
T 1he7_A           94 MAAFMDNPFEF  104 (126)
T ss_dssp             EECCCSCTTSC
T ss_pred             EEEEEcCCCCC
Confidence            99888877653

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.20  E-value=1.4e-10  Score=105.23  Aligned_cols=128  Identities=12%  Similarity=-0.036  Sum_probs=75.0

Q ss_pred             CeEEeecccCCCeEEEEEEEEeCC--CCCCCCCCCCCEEecccc------CCCceeccCCcceEEEcCCeEEEEEEEeee
Q psy12426        172 PKGKVLDLIEGNQYEFRVLAVNKG--GPGEPSDPTAPHIARAKK------VSPYINRDQLSDIKVRAGSNFEFDINVIGE  243 (616)
Q Consensus       172 ~~l~i~~l~~~~~~~y~c~a~n~~--g~~~~s~~~~~~~~~~~~------~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~  243 (616)
                      ..|.|.+++.+|.|.|.|.+.+..  ........ ..+.+....      .+|...+..+....+..|+.+.|.|.+.+.
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~-~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~  157 (230)
T 1ypz_F           79 SILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEG-TKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAF  157 (230)
T ss_dssp             EEEEECSCCGGGCSEEEEEECCTTTCCCCEECSC-EEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEE
T ss_pred             EEEEECcCChhhCEEEEEEEECCCCCcccccCCC-EEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeee
Confidence            479999999999999999998741  11011111 123332100      123221111222334468889999999987


Q ss_pred             -cC-ceeEEEE-CCeeecccCcEE-EEecCC---ceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        244 -PI-PTKEWLC-NDITIISKDRFK-IVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       244 -p~-~~~~W~~-~~~~~~~~~~~~-~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                       |. +.+.|++ ++..+....... ...++.   .+.|.|..... + +.|+|.+.|..+......
T Consensus       158 ~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~~~~  221 (230)
T 1ypz_F          158 FPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGGADQ  221 (230)
T ss_dssp             SSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTTSCE
T ss_pred             cCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCceeE
Confidence             65 5999999 776554221101 111111   23688877765 4 899999999766543333

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.8e-11  Score=95.11  Aligned_cols=77  Identities=16%  Similarity=0.222  Sum_probs=63.8

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      |.|. .+++++.|.+|++++|.|.+.|.|.| .|.|+|||..|...++|.....                          
T Consensus         9 ~~~~-~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~--------------------------   61 (104)
T 2eny_A            9 VGIT-KRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ--------------------------   61 (104)
T ss_dssp             CCCS-BCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEE--------------------------
T ss_pred             CEEE-ecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEc--------------------------
Confidence            4454 56999999999999999999998864 8999999999987777765531                          


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                        ....+|.|.++...|+|.|.|.|.|
T Consensus        62 --~~~~~L~I~~v~~~D~G~Y~C~a~~   86 (104)
T 2eny_A           62 --GRKYILVVREAAPSDAGEVVFSVRG   86 (104)
T ss_dssp             --TTEEEEEECSCCTTTCSCEEEEETT
T ss_pred             --CCEEEEEECCCCHHHCEEEEEEECC
Confidence              1235799999999999999999864

>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha; cytokine, leukemia inhibitory factor, cytokine receptor; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.19  E-value=1.4e-10  Score=90.93  Aligned_cols=95  Identities=23%  Similarity=0.379  Sum_probs=76.2

Q ss_pred             CCCCCCCCCEEEEec--CCeEEEEecCCCC--CCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEE
Q psy12426        408 GRPDRPGQPTVTDWG--KDHVDLEWTPPKK--DGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~--~~~v~l~W~~p~~--~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      ..|++|.++.+....  .+++.|+|.+|..  +.+..+..|+|+|+..++ .|.....  .....+.|.+|.|++.|.|+
T Consensus         6 vkp~pP~~l~v~~~~~~~~~l~lsW~~P~~w~~~~~~~l~Y~v~y~~~~~~~w~~~~~--~~~~~~~l~~L~p~t~Y~~~   83 (109)
T 1uc6_A            6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVEL--SNGTAHTITDAYAGKEYIIQ   83 (109)
T ss_dssp             CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEE--SSCSEEEETTCCSSSCEEEE
T ss_pred             EecCCCcceEEEEcCCCCCEEEEEECCCCCccCCCcEEEEEEEEEEECCCCCcEEEec--ccCCEEEEeCCCCCCEEEEE
Confidence            578899999988764  5899999998864  223368899999998876 6765433  34679999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCEEecc
Q psy12426        483 VIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      |+|.+. |.|.+|..+......+
T Consensus        84 VRa~~~-g~g~wS~WS~~~~~~~  105 (109)
T 1uc6_A           84 VAAKDN-EIGTWSDWSVAAHATP  105 (109)
T ss_dssp             EECCBS-SSCCCCCCCEEEEECC
T ss_pred             EEEEeC-CCCCcCcCCCCeeeee
Confidence            999996 8999999888766553

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.19  E-value=4e-10  Score=103.91  Aligned_cols=127  Identities=10%  Similarity=0.011  Sum_probs=77.7

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCCC-CCCCCCCCCEEecc---ccCCCceeccCCcceEEEcCCeEEEEEEEeee-cC
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGGP-GEPSDPTAPHIARA---KKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PI  245 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g~-~~~s~~~~~~~~~~---~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~  245 (616)
                      ...|.|.+++.+|.|.|.|.+.+..+. ..... ...+.+..   ...+|.+....+....+..|+.+.|.|.+.+. |.
T Consensus        75 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~-~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~  153 (252)
T 1oga_E           75 SFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGP-GTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD  153 (252)
T ss_dssp             BCCEEECSCCSCCCEEEEEEEESSTTSCCEECC-CEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS
T ss_pred             EEEEEECcCChhhCEEEEEEEecCCccceeECC-CEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCC
Confidence            347999999999999999999986211 00011 11233322   12466654333333334468999999999986 65


Q ss_pred             -ceeEEEECCeeecccCcEE---EE----ecCC----ceEEEecCCCCC-CcEEEEEEEEcCCCCc
Q psy12426        246 -PTKEWLCNDITIISKDRFK---IV----NDDK----STKLKVFDSKRG-DSGIYTLAVKNSWGTD  298 (616)
Q Consensus       246 -~~~~W~~~~~~~~~~~~~~---~~----~~~~----~~~l~i~~l~~~-~~g~y~c~a~n~~g~~  298 (616)
                       +.+.|++++..+.......   ..    ..+.    .+.|.|...... +.+.|+|.+.|.....
T Consensus       154 ~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~  219 (252)
T 1oga_E          154 HVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE  219 (252)
T ss_dssp             CEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             CcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence             4999999998875432211   00    0111    124666655443 5778999999965433

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.19  E-value=2.1e-10  Score=106.05  Aligned_cols=197  Identities=12%  Similarity=0.036  Sum_probs=103.4

Q ss_pred             ccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeeec-----CceeEEEEC
Q psy12426        179 LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEP-----IPTKEWLCN  253 (616)
Q Consensus       179 l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p-----~~~~~W~~~  253 (616)
                      ++++|.|.|+|.|.   |..... .  .+..   ..+|.+ ...+..+.+.+|+++.|.|.+.+.+     .+.+.|+++
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~-~--~~~~---~~~~~~-~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   80 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTN-Y--WMNW---LRELVM-TQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQ   80 (254)
T ss_dssp             ------------------------------------CCCE-EEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEE
T ss_pred             ecCCccEEEEEcCc---hhhhhh-h--hhhe---eeceeE-EeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEe
Confidence            67899999999998   332211 1  1111   123444 3445678899999999999999988     489999974


Q ss_pred             C--eee------------cccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEEEEEecCCCCCCCCcc
Q psy12426        254 D--ITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAKVTVLDIPSPPEGPLK  318 (616)
Q Consensus       254 ~--~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~l~v~~~p~~p~~~~~  318 (616)
                      +  ..+            ....++.+...+....|.|.+++..|.|.|+|.|.|..+.. .....+.+.....+|.  +.
T Consensus        81 ~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~--v~  158 (254)
T 2c1o_A           81 RPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPT--VS  158 (254)
T ss_dssp             CTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCE--EE
T ss_pred             CCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCe--eE
Confidence            3  211            11256666656666799999999999999999999876543 2233566654333332  11


Q ss_pred             ce-----eecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC---CC-EEEc--c-cc-----ccceEEeccccCCCeEEE
Q psy12426        319 PS-----NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET---GR-WVPM--G-DV-----SGTYTRAENLIEGHDYNF  381 (616)
Q Consensus       319 ~~-----~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~---~~-~~~~--~-~~-----~~~~~~i~~L~~~~~y~~  381 (616)
                      +.     ...+..+.|.|...... ... .  .+.|...+.   .. ....  . ..     ....+.|......+.+.|
T Consensus       159 ~~~~~~~~~~g~~v~l~C~~~g~~-p~~-~--~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y  234 (254)
T 2c1o_A          159 IFPPSSEQLTSGGASVVCFLNNFY-PKD-I--NVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSY  234 (254)
T ss_dssp             EECCCHHHHHTTEEEEEEEEEEEB-SSC-C--EEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEE
T ss_pred             eecCChhhccCCcEEEEEEEeccc-CCC-c--EEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeE
Confidence            11     12356888999753211 111 1  122222111   00 0000  0 00     124577877777778899


Q ss_pred             EEEEEecCcC
Q psy12426        382 RVKAVNKIGE  391 (616)
Q Consensus       382 ~v~a~n~~g~  391 (616)
                      .|.|.|....
T Consensus       235 ~C~a~n~~~~  244 (254)
T 2c1o_A          235 TCEATHKTST  244 (254)
T ss_dssp             EEEEECTTCS
T ss_pred             EEEEEcCCCC
Confidence            9999986654

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.19  E-value=2.3e-10  Score=91.76  Aligned_cols=101  Identities=24%  Similarity=0.371  Sum_probs=78.9

Q ss_pred             ecCCCCCCCCccce-eecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCEEEccccccceEEeccccCCCeEEEEEE
Q psy12426        307 LDIPSPPEGPLKPS-NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMGDVSGTYTRAENLIEGHDYNFRVK  384 (616)
Q Consensus       307 ~~~p~~p~~~~~~~-~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~  384 (616)
                      ...|.+|.+ +.+. ....+.+.|+|.+|..+++..+..|.|+++.... ..|..+.......+.+.+|.+++.|.|+|+
T Consensus        15 ~~~P~~P~~-~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~   93 (120)
T 2crm_A           15 PDKPGIPVK-PSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVY   93 (120)
T ss_dssp             CCCCCCCCC-CEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEE
T ss_pred             CCCCCCCCC-CEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCEEEEeccccEEEECCCCCCCEEEEEEE
Confidence            345667766 3444 6778999999999887777789999999988665 578877666678899999999999999999


Q ss_pred             EEecCcCCCCccccCCEEccCCCCCCC
Q psy12426        385 AVNKIGESLPLVCQSPITAKDPFGRPD  411 (616)
Q Consensus       385 a~n~~g~~~~~~~s~~~~~~~~~~~p~  411 (616)
                      |.|..|.+.++   ..+.+.+...+|.
T Consensus        94 A~n~~G~s~~S---~~~~~~T~~~~p~  117 (120)
T 2crm_A           94 CISDGGQSAVS---ESLLVQTPAVSGP  117 (120)
T ss_dssp             EEETTEECCCC---CCCCCCCCCCSCC
T ss_pred             EEcCCccCCCc---ccEEEEcCCCCCC
Confidence            99999988875   3444554444443

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.19  E-value=2.5e-11  Score=94.39  Aligned_cols=78  Identities=13%  Similarity=0.251  Sum_probs=63.4

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeecc--ceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP--IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G--~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      ||..+...++++.+.+|++++|.|.+.| |.|.|+|+|++..+....  +|.....                        
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~------------------------   60 (103)
T 1x44_A            6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVE------------------------   60 (103)
T ss_dssp             SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEE------------------------
T ss_pred             CCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEc------------------------
Confidence            4554446799999999999999999988 779999999999987655  5554421                        


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                          .....|.|.++...|.|.|.|.|.|
T Consensus        61 ----~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A           61 ----GKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             ----TTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             ----CCEEEEEECCCCcccCEEEEEEECC
Confidence                1235799999999999999999986

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.19  E-value=3.9e-11  Score=101.09  Aligned_cols=86  Identities=19%  Similarity=0.326  Sum_probs=69.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|. ..+.++.+.+|+.+.|.|.+.|.|.|.|+|+|++..+.....|......                         
T Consensus        41 ~P~~~-~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~-------------------------   94 (154)
T 1fhg_A           41 KPYFT-KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE-------------------------   94 (154)
T ss_dssp             EEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECT-------------------------
T ss_pred             CCeEE-ccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECC-------------------------
Confidence            45665 3478899999999999999999999999999999988866666544211                         


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                        .....|.|.++...|.|.|.|.|.|..|....
T Consensus        95 --~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  126 (154)
T 1fhg_A           95 --EGNCSLTISEVCGDDDAKYTCKAVNSLGEATC  126 (154)
T ss_dssp             --TCEEEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             --CCeEEEEECCCChhcCEEEEEEEEECCCeEEE
Confidence              11358999999999999999999999986543

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=2.6e-11  Score=94.53  Aligned_cols=79  Identities=10%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             CCccCCCCCCc---eEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGD---IKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~---~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      ||.+... |.+   +.+.+|+.+.|.|.+.|.|.| |+|+|++..+...+.|.....                       
T Consensus         7 ~P~~~~~-p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~-----------------------   61 (104)
T 2e6p_A            7 GPVHILS-PQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMD-----------------------   61 (104)
T ss_dssp             SSCCCCB-CCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEE-----------------------
T ss_pred             CCCEEEC-CCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeC-----------------------
Confidence            5677655 555   889999999999999999999 999999999886666654421                       


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~  109 (616)
                           .....|.|.++...|.|.|.|.|.|..
T Consensus        62 -----~~~~~L~I~~~~~~D~G~Y~C~a~n~~   88 (104)
T 2e6p_A           62 -----GRKHRLILPEAKVQDSGEFECRTEGVS   88 (104)
T ss_dssp             -----TTEEEEEESSCCTTTCEEEEEECSSCC
T ss_pred             -----CCEEEEEECCCChhhCEEEEEEECCce
Confidence                 123579999999999999999999863

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=8.7e-11  Score=91.33  Aligned_cols=95  Identities=23%  Similarity=0.308  Sum_probs=80.3

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.+ ...+.+..+..|+.+.|.|.+.+ |.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|
T Consensus         7 ~pp~~-~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A            7 GPAAI-IKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCCE-EECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CCcEE-EecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            34555 44456789999999999999997 88899999999998878888888777778999999999999999999988


Q ss_pred             CCCCceeeEEEEEecCCCCCC
Q psy12426        294 SWGTDKGTAKVTVLDIPSPPE  314 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~~p~~p~  314 (616)
                          ....+.|.|..+|.+|.
T Consensus        85 ----~~~~~~l~V~~~p~~~~  101 (103)
T 2edf_A           85 ----SKSTASLHVEEKASGPS  101 (103)
T ss_dssp             ----CEEEEEEEECCCSSSSC
T ss_pred             ----CCcEEEEEEeCCCCCCC
Confidence                46678888888877664

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=4e-11  Score=96.92  Aligned_cols=84  Identities=21%  Similarity=0.358  Sum_probs=67.3

Q ss_pred             CCCCCCC-CCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeC-----------C-CCceEeEeecCCccEEEcCCCC
Q psy12426        408 GRPDRPG-QPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-----------Y-GPWEKACIVPANITATSVPDLK  474 (616)
Q Consensus       408 ~~p~~p~-~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~-----------~-~~~~~~~~~~~~~~~~~l~~L~  474 (616)
                      ..|++|. ++.+..++.++++|+|.+|..++   +..|.++|+..           . ..|.....  .....+++.+|.
T Consensus        14 ~~P~~P~~~~~~~~~~~~sv~L~W~~p~~~g---~~~Y~~~Y~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~v~gL~   88 (127)
T 2dmk_A           14 TAPNPPSIREELCTASHDTITVHWISDDEFS---ISSYELQYTIFTGQANFISLYNSVDSWMIVPN--IKQNHYTVHGLQ   88 (127)
T ss_dssp             SSCCCCEEEEEEEEEETTEEEEEEECSCCSS---EEEEEEEEEEESCCSCHHHHHHTGGGSEEEEE--ECSSEEEEESCC
T ss_pred             CCCcCCCCCCEEEeeeCCEEEEEECCCCCCC---ccceEEEEEEecccccccccccCCCCcEEeec--ccCCeEEECCCC
Confidence            6789998 88999999999999999876533   78899998751           1 25765543  346789999999


Q ss_pred             CCCeEEEEEEEEcCCCCCCCCCC
Q psy12426        475 EGEEYEFRVIAVNKGGPGEPSKA  497 (616)
Q Consensus       475 p~t~Y~~~v~a~n~~G~g~~s~~  497 (616)
                      |++.|.|||+|+|..|.+ +|.+
T Consensus        89 p~t~Y~frV~A~N~~G~~-~S~~  110 (127)
T 2dmk_A           89 SGTRYIFIVKAINQAGSR-NSEP  110 (127)
T ss_dssp             SSCEEEEEEEEEESSCEE-ECCC
T ss_pred             CCCEEEEEEEEEeCCCCC-CCcC
Confidence            999999999999999994 4443

>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.2e-10  Score=90.30  Aligned_cols=82  Identities=21%  Similarity=0.315  Sum_probs=65.7

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-Cce--EeEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWE--KACIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~--~~~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      .+|.+|.++++..++.+++.|+|.+|..     +.+|.|+|+..+. .|.  ....+...  .++|.+|.|++.|.|+|+
T Consensus         7 ~~~~~P~~l~~~~~~~~sv~lsW~~p~~-----~~~Y~v~y~~~~~~~~~~~~~~~~~~~--~~~l~~L~p~t~Y~~~V~   79 (104)
T 2dkm_A            7 GPLPPPRALTLAAVTPRTVHLTWQPSAG-----ATHYLVRCSPASPKGEEEEREVQVGRP--EVLLDGLEPGRDYEVSVQ   79 (104)
T ss_dssp             CSCCCCCCCEEEEECSSEEEEECCCCSS-----CSEEEEEEEESSSCCSSCCEEEEESSS--EEEEESCCTTCCEEEEEE
T ss_pred             CCCCCCceeEEEecCCCEEEEEEeCCCC-----CCeEEEEEEECCCCCCcceEEEecCCC--EEEECCCCCCCEEEEEEE
Confidence            4678999999999999999999997642     4889999987764 332  22333333  999999999999999999


Q ss_pred             EEcCCCCCCCCC
Q psy12426        485 AVNKGGPGEPSK  496 (616)
Q Consensus       485 a~n~~G~g~~s~  496 (616)
                      |+|..|.|.++.
T Consensus        80 A~~~~~~s~p~~   91 (104)
T 2dkm_A           80 SLRGPEGSEARG   91 (104)
T ss_dssp             EECSSSBCCCEE
T ss_pred             EECCCCCCCCEE
Confidence            999988887553

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=3.4e-11  Score=96.52  Aligned_cols=107  Identities=25%  Similarity=0.466  Sum_probs=88.7

Q ss_pred             CCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc-ccccceEEeccc
Q psy12426        295 WGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGTYTRAENL  373 (616)
Q Consensus       295 ~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~i~~L  373 (616)
                      .|.....+.+.+...|.+|.+ +.+..+....+.|+|.+|..+++.++.+|.|+++......|..+. ......+.+.+|
T Consensus         3 ~G~~~~~~~v~~~~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~v~~L   81 (120)
T 2yux_A            3 SGSSGASIDIQIIDRPGPPQI-VKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATITEL   81 (120)
T ss_dssp             CCCCCCCCCCCCCCCCCCCSC-EEEEEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTTCCCEEEESSCCSSCCEECCC
T ss_pred             CCcccEEEEEEeecCCCcCCC-CEEEEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCCCceEEeeecCCcCEEEECCC
Confidence            355666677777888999887 778888999999999998877778899999999988777887764 345678999999


Q ss_pred             cCCCeEEEEEEEEecCcCCCCccccCCEE
Q psy12426        374 IEGHDYNFRVKAVNKIGESLPLVCQSPIT  402 (616)
Q Consensus       374 ~~~~~y~~~v~a~n~~g~~~~~~~s~~~~  402 (616)
                      .+++.|.|+|.|.|..|.+.++..+..+.
T Consensus        82 ~p~t~Y~frV~A~n~~G~s~~S~~s~~~~  110 (120)
T 2yux_A           82 VIGNEYYFRVFSENMCGLSEDATMTKESA  110 (120)
T ss_dssp             CSSEEEEEEECCCSSSCSCSSCEECSSCE
T ss_pred             CCCCEEEEEEEEeeCCcCCCCccCcCCce
Confidence            99999999999999999998876554443

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.18  E-value=2.7e-10  Score=89.77  Aligned_cols=95  Identities=31%  Similarity=0.458  Sum_probs=78.0

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc--cccceEEeccccCCCeEEEEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      .+|.+|.+ +.+.....+++.|+|.+|..+++..+.+|.|+++..+...|..+..  .....+.+.+|.+++.|.|+|+|
T Consensus         7 ~~P~~P~~-l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A   85 (111)
T 1x5y_A            7 GPTSAPQH-LTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVG   85 (111)
T ss_dssp             SCCCCCEE-EEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEE
T ss_pred             CCCcCCCC-CEEEeccCCEEEEEECCCCcCCCCcccEEEEEEEECCCCceEEccccCCcccEEEECCCCCCCEEEEEEEE
Confidence            35566655 6777888999999999988777777999999999887778988754  35678999999999999999999


Q ss_pred             EecCcCCCCccccCCEEc
Q psy12426        386 VNKIGESLPLVCQSPITA  403 (616)
Q Consensus       386 ~n~~g~~~~~~~s~~~~~  403 (616)
                      .|..|.+.++..+..+++
T Consensus        86 ~n~~G~s~~S~~~~~v~~  103 (111)
T 1x5y_A           86 VNIAGRSEPATLLQPVTI  103 (111)
T ss_dssp             EETTEECCCCCCSSCBCC
T ss_pred             EcCCcCCCCccCCCCEEe
Confidence            999999888765554443

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.18  E-value=2.6e-10  Score=90.20  Aligned_cols=95  Identities=16%  Similarity=0.241  Sum_probs=74.2

Q ss_pred             ccCCcceEEEcCCeEEEEEEEeee---cCceeEEEECCeee-c--ccCcEEEEec--C----CceEEEecCCCCCCcEEE
Q psy12426        220 RDQLSDIKVRAGSNFEFDINVIGE---PIPTKEWLCNDITI-I--SKDRFKIVND--D----KSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       220 ~~~~~~~~v~~g~~~~l~c~~~~~---p~~~~~W~~~~~~~-~--~~~~~~~~~~--~----~~~~l~i~~l~~~~~g~y  287 (616)
                      ...+.++.+.+|+.+.|.|.+.+.   |.|.++|+|+.... .  ...++.+...  .    ....|+|.++...|+|.|
T Consensus        11 ~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y   90 (126)
T 2dav_A           11 IEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNY   90 (126)
T ss_dssp             CSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEE
T ss_pred             EEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEE
Confidence            344577889999999999999876   88999999974221 1  1345554321  1    146899999999999999


Q ss_pred             EEEEEcCCCCceeeEEEEEec-CCCCCC
Q psy12426        288 TLAVKNSWGTDKGTAKVTVLD-IPSPPE  314 (616)
Q Consensus       288 ~c~a~n~~g~~~~~~~l~v~~-~p~~p~  314 (616)
                      +|.|.|..|.....+.|+|.. ++..|.
T Consensus        91 ~Cevsn~~g~~~~~~~L~V~~~~~~~p~  118 (126)
T 2dav_A           91 RCEVTYKDKFDSCSFDLEVHESTGTTPN  118 (126)
T ss_dssp             EEEEECSSCEEEECCEEEEECCCCSCCC
T ss_pred             EEEEEeCCCcEEEEEEEEEEecCCCCCe
Confidence            999999999999999999998 655554

>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens}

Probab=99.18  E-value=5.1e-11  Score=105.43  Aligned_cols=177  Identities=13%  Similarity=0.014  Sum_probs=98.1

Q ss_pred             CCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEE---ccccccceEEecc--ccCCCeEEEEEEEEe
Q psy12426        313 PEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP---MGDVSGTYTRAEN--LIEGHDYNFRVKAVN  387 (616)
Q Consensus       313 p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~---~~~~~~~~~~i~~--L~~~~~y~~~v~a~n  387 (616)
                      |.+ +.+...... ..|.|+++.... .....|.|+|+..+...|..   +.....+.+.|..  +.+...|.+||+|.+
T Consensus        11 P~n-v~~~s~n~~-~iL~W~p~~~~~-~~~~~Y~Vqy~~~~~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~~Y~~RV~A~~   87 (211)
T 3g9v_A           11 PQR-VQFQSRNFH-NILQWQPGRALT-GNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVRAAS   87 (211)
T ss_dssp             CEE-EEEEEETTE-EEEEEECCCC----CCCEEEEEEEETTCSSCEEEEEEEEECCSEEECTGGGCSTTSCEEEEEEEEE
T ss_pred             Cce-eEEEEEcCc-eEEEECCCCCCC-CCCeEEEEEEEECCCCceEECccCCCCCCCEECCCCcccccCccEEEEEEEEC
Confidence            454 666555454 459999765432 23678999998876677874   3344556777764  467889999999999


Q ss_pred             cCcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCC----CCCC-------cceeEEEEEeeCCCCce
Q psy12426        388 KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKK----DGGS-------PISQYIIEKKPKYGPWE  456 (616)
Q Consensus       388 ~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~----~~~~-------~i~~Y~i~~~~~~~~~~  456 (616)
                      +.+.+.++... .+... ....+++| .+.+.... ++|.|.|.+|..    .++.       -...|.|.|.+.++.-.
T Consensus        88 ~~~~S~ws~~~-~f~~~-~~t~i~PP-~v~v~~~~-~si~V~~~~P~~~~~~~ng~~~~~~~~~~l~Y~v~y~~~~~~~~  163 (211)
T 3g9v_A           88 AGSYSEWSMTP-RFTPW-WETKIDPP-VMNITQVN-GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKE  163 (211)
T ss_dssp             TTEECCCEECC-CBCHH-HHCBCCCC-EEECC------CCCEEECCCCGGGGCSSCSSCHHHHTTCEEEEEEC------C
T ss_pred             CCCcCCCEecC-ccccc-ccCccCCC-EEEEEEcC-CEEEEEEECCCCccccCCCceeeehhcceeEEEEEEEECCCccE
Confidence            88877664322 11110 11334555 36665544 599999998865    2332       13669999987664211


Q ss_pred             EeEeecCCccEEEcCCCCCCCeEEEEEEEEcC--CCCCCCCCC
Q psy12426        457 KACIVPANITATSVPDLKEGEEYEFRVIAVNK--GGPGEPSKA  497 (616)
Q Consensus       457 ~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~--~G~g~~s~~  497 (616)
                      . .........++|.+|.|++.|.|+|+|...  ...|++|..
T Consensus       164 ~-~~~~~~~~~~~i~~L~p~t~Ycv~V~a~~~~~~~~s~~S~~  205 (211)
T 3g9v_A          164 Q-KVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEE  205 (211)
T ss_dssp             E-EEEEESSCCCC----------CEEEEEEETTTTEECCCCCC
T ss_pred             E-EEEecCCcEEEEecCCCCCeEEEEEEEEeCCCCCcCCCCCC
Confidence            1 122234678899999999999999999853  234565553

>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}

Probab=99.18  E-value=1.8e-10  Score=104.31  Aligned_cols=125  Identities=17%  Similarity=0.197  Sum_probs=83.6

Q ss_pred             CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEec-CCCCCCCC-ccceeecCCeEEEEEeCCCCCCCCceEEEEE
Q psy12426        270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD-IPSPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVV  347 (616)
Q Consensus       270 ~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~-~p~~p~~~-~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v  347 (616)
                      ....+.+.+|.+...|.|++.|.|..|.+..+..+.+.. .+.+|..+ ........+++.|+|.+|..+++ .|.+|.|
T Consensus        44 ~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~~~~~~~~~sv~l~W~~P~~~~G-~i~~Y~v  122 (232)
T 4go6_B           44 DYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSG-KIIEYSV  122 (232)
T ss_dssp             -----CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEEEEEEEETTEEEEEEECCSCCSS-CCCEEEE
T ss_pred             CccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCeeeEEecCCCEEEEEEeCCCCCCC-ceeeEEE
Confidence            345789999999999999999999999876555444433 22233222 33445678899999999887765 8999999


Q ss_pred             EEEeCCCCC-------------EEEccccccc---------eEEeccccCCCeEEEEEEEEecCcCCCCc
Q psy12426        348 EKMDMETGR-------------WVPMGDVSGT---------YTRAENLIEGHDYNFRVKAVNKIGESLPL  395 (616)
Q Consensus       348 ~~~~~~~~~-------------~~~~~~~~~~---------~~~i~~L~~~~~y~~~v~a~n~~g~~~~~  395 (616)
                      +++......             |.........         ...+.+|.+++.|.|+|.|.|..|.|+++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~t~Y~frV~A~N~~G~Gp~S  192 (232)
T 4go6_B          123 YLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPAT  192 (232)
T ss_dssp             EEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEESSSEEEEEEEEEECSSCBCCCE
T ss_pred             EEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecCccCCceEEEEEEECCCcCCCCc
Confidence            997644332             2222211111         12345788999999999999999999875

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.18  E-value=2.1e-10  Score=88.47  Aligned_cols=92  Identities=15%  Similarity=0.239  Sum_probs=77.4

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.|.......+.+..|+.+.|.|.+. .|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|  
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            3566644433346888999999999998 7899999999999988788888887777789999999999999999999  


Q ss_pred             CCCCceeeEEEEEecCC
Q psy12426        294 SWGTDKGTAKVTVLDIP  310 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~~p  310 (616)
                        |....++.|.|..+|
T Consensus        83 --g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 --GDEKCSTELFVRSGP   97 (100)
T ss_dssp             --TTEEEEEEEEECCSC
T ss_pred             --CCceEEEEEEEecCC
Confidence              677778888888765

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.17  E-value=4.1e-11  Score=92.70  Aligned_cols=83  Identities=16%  Similarity=0.235  Sum_probs=65.1

Q ss_pred             CCccCCCC---CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccc---eEEEeecCCCCCceeEeeeccCCccc
Q psy12426          1 APHIDRRH---LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPI---WEKCAQTEGDTPKGKVLDLIEGNHPI   74 (616)
Q Consensus         1 ~P~i~~~~---~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~---Y~C~a~n~~~~~~~~v~~~~~~~~p~   74 (616)
                      ||.+...+   +..+.+.+|+.+.|.|.+.|.|.|.|.|+|+|..+.....   +...                      
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~----------------------   61 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR----------------------   61 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEE----------------------
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEe----------------------
Confidence            46665332   4678899999999999999999999999999988864222   1111                      


Q ss_pred             eeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        75 w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                              .....|.|.++...|.|.|.|.|.|..|...
T Consensus        62 --------~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~   92 (100)
T 3caf_A           62 --------NQHWSLIMESVVPSDKGNYTCVVENEYGSIN   92 (100)
T ss_dssp             --------GGGTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             --------cCeEEEEEccCCcCCCEEEEEEEEeCCCEEE
Confidence                    1135799999999999999999999988643

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.17  E-value=2.1e-10  Score=100.23  Aligned_cols=115  Identities=7%  Similarity=-0.062  Sum_probs=65.5

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cC----ce
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PI----PT  247 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~----~~  247 (616)
                      .|.|.+++.+|.|.|.|.|.|..|....   ...+.+.   .+|......+.  ....|+.+ |.|.+.+. |.    ++
T Consensus        60 ~L~I~~v~~~d~G~Y~C~a~n~~~~~~~---~~~ltV~---~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lt  130 (210)
T 1gsm_A           60 VLTVRNASLSAAGTRVCVGSCGGRTFQH---TVQLLVY---AFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALS  130 (210)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEE---EEEEEEE---BCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEE
T ss_pred             EEEECccCcccCceEEEEEEeCCCceEE---EEEEEEE---ecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcE
Confidence            4666677777777777777765543211   1112222   33433211111  34467778 99999986 63    48


Q ss_pred             eEEEECCeeecccCcEE--EEe------cCC------ceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        248 KEWLCNDITIISKDRFK--IVN------DDK------STKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       248 ~~W~~~~~~~~~~~~~~--~~~------~~~------~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      +.|+|++..+.......  ...      .+.      .+.+.+.....++.+.|+|.|.+...
T Consensus       131 i~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~  193 (210)
T 1gsm_A          131 FSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLP  193 (210)
T ss_dssp             EEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEET
T ss_pred             EEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCC
Confidence            99999999985432111  110      011      12444445555566899999998654

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.17  E-value=2.3e-10  Score=96.37  Aligned_cols=100  Identities=29%  Similarity=0.427  Sum_probs=81.5

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec-CCceEEEecCCCCCCcEEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      .+|.|. ..+..+.+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+... .....|.|.++...|.|.|+|.|.
T Consensus        40 ~~P~~~-~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  118 (154)
T 1fhg_A           40 VKPYFT-KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV  118 (154)
T ss_dssp             EEEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEE-ccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEE
Confidence            346553 345678899999999999999999999999999999887777777643 345699999999999999999999


Q ss_pred             cCCCCceeeEEEEEecCCCCCC
Q psy12426        293 NSWGTDKGTAKVTVLDIPSPPE  314 (616)
Q Consensus       293 n~~g~~~~~~~l~v~~~p~~p~  314 (616)
                      |..|.....+.|.|..+|....
T Consensus       119 N~~G~~~~~~~l~V~~~p~~~~  140 (154)
T 1fhg_A          119 NSLGEATCTAELLVETMGKEGE  140 (154)
T ss_dssp             ETTEEEEEEEEEEEECC-----
T ss_pred             ECCCeEEEEEEEEEeCcCcCCC
Confidence            9999988889999988775443

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.17  E-value=2e-10  Score=90.20  Aligned_cols=102  Identities=20%  Similarity=0.230  Sum_probs=79.6

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCEEEccccccceEEeccccCCCeEEEEEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMGDVSGTYTRAENLIEGHDYNFRVKAV  386 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  386 (616)
                      ..|.+|.. ..+.....+++.|+|.++...++..+.+|.|+++.... ..|..........+++.+|.+++.|.|+|.|.
T Consensus         6 ~~P~~P~~-p~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   84 (109)
T 1x5x_A            6 SGPSMPAS-PVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAY   84 (109)
T ss_dssp             CCCCCCCC-CEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEE
T ss_pred             CCCcCCCC-CEEEEccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeEeCCccEEEECCCCCCCEEEEEEEEE
Confidence            45677776 45778889999999998887767689999999987654 35665555556789999999999999999999


Q ss_pred             ecCcCCCCccccCCEEccCCCCCCCCC
Q psy12426        387 NKIGESLPLVCQSPITAKDPFGRPDRP  413 (616)
Q Consensus       387 n~~g~~~~~~~s~~~~~~~~~~~p~~p  413 (616)
                      |..|.+.++   ..+.+.+...+|.+|
T Consensus        85 n~~G~s~~S---~~~~~~T~~~~P~~p  108 (109)
T 1x5x_A           85 NSEGKSNPS---EVVEFTTCPDSGPSS  108 (109)
T ss_dssp             CSSCEEEEC---CCEEEECCCCCCCCC
T ss_pred             eCCCCcCCc---cCEEeEeCCCCCCCC
Confidence            999987764   455555555666554

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.17  E-value=1e-09  Score=103.44  Aligned_cols=113  Identities=13%  Similarity=0.074  Sum_probs=75.4

Q ss_pred             CcEEEEEEEEcCCCCceeeEEEEE--ecCCCCCCCCccceeecC-CeEEEEEeCCCCCC---CCceEEEEEEEEeCCCCC
Q psy12426        283 DSGIYTLAVKNSWGTDKGTAKVTV--LDIPSPPEGPLKPSNITK-SSCNLEWRAPRDDG---GTDILHYVVEKMDMETGR  356 (616)
Q Consensus       283 ~~g~y~c~a~n~~g~~~~~~~l~v--~~~p~~p~~~~~~~~~~~-~~~~l~W~~~~~~~---~~~i~~y~v~~~~~~~~~  356 (616)
                      ..|.++|.|.|..|.......+.+  ...|.+|.+ +.+..... ..+.|+|.+|....   +.....|.|+|+..+...
T Consensus       184 ~~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~-l~~~~~~~~~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~~  262 (306)
T 3d85_D          184 LPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKN-LQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKRE  262 (306)
T ss_dssp             SCEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEE-EEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC----
T ss_pred             EEEEEEEEEEccCCccccceEEEehhcEecCCCce-EEEEEecCCCcEEEEEcCCCCCcCCCceeeEEEEEEEEECCCCc
Confidence            478899999999886655443333  457888877 77666433 78999999875432   123479999998766555


Q ss_pred             EEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccC
Q psy12426        357 WVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQS  399 (616)
Q Consensus       357 ~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~  399 (616)
                      |........+++.+   .++..|.|+|+|.+..|.|.+|++|.
T Consensus       263 ~~~~~~~~~ts~~l---~~~~~Y~vqVRa~~~~~~G~WSeWS~  302 (306)
T 3d85_D          263 KKDRVFTDKTSATV---ICRKNASISVRAQDRYYSSSWSEWAS  302 (306)
T ss_dssp             --CEEEESSSEEEE---CCCSSCEEEEEEEESSSCCCCCCCEE
T ss_pred             cEEEeeccccEEEE---eCCCeEEEEEEeccCCCCCCCCCCCC
Confidence            54333333445555   35899999999999989888887764

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=1.1e-10  Score=90.59  Aligned_cols=94  Identities=20%  Similarity=0.278  Sum_probs=78.6

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecC-ceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPI-PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      +|.| ...+.++.+.+|+++.|.|.+.+.|. +.+.|++++..+..+.++.+...+....|.|.+++.+|+|.|+|.|  
T Consensus         8 p~~~-~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a--   84 (104)
T 2eny_A            8 HVGI-TKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV--   84 (104)
T ss_dssp             CCCC-SBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEE--
T ss_pred             CCEE-EecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE--
Confidence            3444 45567889999999999999998875 4899999999998888888887777889999999999999999998  


Q ss_pred             CCCCceeeEEEEEecCCCCC
Q psy12426        294 SWGTDKGTAKVTVLDIPSPP  313 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~~p~~p  313 (616)
                        +....++.|.|..+|..+
T Consensus        85 --~~~~~~a~L~V~~~p~~~  102 (104)
T 2eny_A           85 --RGLTSKASLIVRERSGPS  102 (104)
T ss_dssp             --TTEEEEECEEEECCCSSC
T ss_pred             --CCeeEEEEEEEeCCCcCC
Confidence              445678888888877544

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.7e-11  Score=93.98  Aligned_cols=74  Identities=15%  Similarity=0.266  Sum_probs=61.9

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.|. ..|.+..+.+|+.+.|.|.+.|.|.|.|+|+|++..+.                                     
T Consensus        11 ~~i~-~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~-------------------------------------   52 (96)
T 2ens_A           11 VQLV-VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP-------------------------------------   52 (96)
T ss_dssp             CCCE-EESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCS-------------------------------------
T ss_pred             CEEE-ECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECc-------------------------------------
Confidence            4554 34778889999999999999999999999999998776                                     


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      ......|.|.++...|.|.|.|.|.|..|...
T Consensus        53 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~   84 (96)
T 2ens_A           53 LPPSPVLILPEIGPQDQGTYSCVATHSSHGPQ   84 (96)
T ss_dssp             SCCCSEEEEESCCTTTCEEEECEECCSSCCCE
T ss_pred             CCCCCEEEECCCCcccCEEEEEEEEeCCCCcE
Confidence            12246899999999999999999999766443

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.16  E-value=1.3e-10  Score=87.13  Aligned_cols=80  Identities=13%  Similarity=0.139  Sum_probs=65.5

Q ss_pred             cCCcceE--EEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        221 DQLSDIK--VRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       221 ~~~~~~~--v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      .+..+..  +.+|+.+.|.|.+.+ |.+.+.|+|+|..+..+.++.+...+....|.|.++...|+|.|+|.|.|    .
T Consensus         9 ~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~   83 (91)
T 2lvc_A            9 DPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD----E   83 (91)
T ss_dssp             BCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS----C
T ss_pred             ccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc----e
Confidence            3344443  458999999999865 88899999999999988899888888888999999999999999999855    3


Q ss_pred             eeeEEEE
Q psy12426        299 KGTAKVT  305 (616)
Q Consensus       299 ~~~~~l~  305 (616)
                      ..++.|+
T Consensus        84 ~~~~~lt   90 (91)
T 2lvc_A           84 CAYFTVT   90 (91)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4444444

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.16  E-value=4.4e-10  Score=99.56  Aligned_cols=162  Identities=11%  Similarity=0.090  Sum_probs=102.1

Q ss_pred             ceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      .+.+.+|+.+.|.|.+.|.|.+.+.|++...... ..+  ....+....|.|.+++..|.|.|+|.|.|..|.....+.|
T Consensus        10 ~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~-~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l   86 (202)
T 1vca_A           10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-NGK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (202)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC-SSE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc-cce--EEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence            3455699999999999999999999998432111 111  1223345579999999999999999999998877778888


Q ss_pred             EEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE-EEc-c-------ccccceEEeccccC
Q psy12426        305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPM-G-------DVSGTYTRAENLIE  375 (616)
Q Consensus       305 ~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~-~~~-~-------~~~~~~~~i~~L~~  375 (616)
                      .|..+|..+.-........+..+.|.|......   +.....+.|...+...- ... .       ......+.+.....
T Consensus        87 ~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~---p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~  163 (202)
T 1vca_A           87 EIYSFPKDPEIHLSGPLEAGKPITVKCSVADVY---PFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIE  163 (202)
T ss_dssp             EEEBCCSCCEEEESSCEETTSCEEEEEEEEEEB---SGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGG
T ss_pred             EEEeCCCCCEeCCceEEcCCCCEEEEEEECCcC---CCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeec
Confidence            888776544321112345677889999853211   11112233332211000 000 0       01123345666666


Q ss_pred             CCeEEEEEEEEecCcCC
Q psy12426        376 GHDYNFRVKAVNKIGES  392 (616)
Q Consensus       376 ~~~y~~~v~a~n~~g~~  392 (616)
                      .+...|+|.|.|..|..
T Consensus       164 d~~g~ytC~A~n~~~~~  180 (202)
T 1vca_A          164 DIGKVLVCRAKLHIDEM  180 (202)
T ss_dssp             GTTCEEEEEEEECSCCC
T ss_pred             cCCCeEEEEEEccccCC
Confidence            66778999999988764

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=4e-11  Score=93.76  Aligned_cols=91  Identities=12%  Similarity=0.127  Sum_probs=63.1

Q ss_pred             ccCCCCCCceEecCCCeEEEEEEEeee---cCCeeeeeeCCe-eeee--ccceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426          3 HIDRRHLGDIKLSAGTTLKFDANIIGE---PVPHVDWRAGGN-PLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         3 ~i~~~~~~~~~v~~g~~v~l~C~~~g~---P~p~v~W~~~~~-~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      .++...|+++.|.+|++++|.|.+.|.   |.|.|+|||+.. .+..  ...+.-....                     
T Consensus        13 ~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~---------------------   71 (118)
T 2edn_A           13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESH---------------------   71 (118)
T ss_dssp             SSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEE---------------------
T ss_pred             ceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEecccc---------------------
Confidence            345566999999999999999999885   799999999742 1211  1122211100                     


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                       .+........|.|.++.+.|.|.|+|.|.|..|.....
T Consensus        72 -~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~~s~~  109 (118)
T 2edn_A           72 -NSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCG  109 (118)
T ss_dssp             -CSSSCEEEEEEEESSCCTTTCSCEEEEEECSSCEEEEE
T ss_pred             -ccccccceEEEEEeeCChhhCEEEEEEEEEcCCcEEEE
Confidence             00001124689999999999999999999999865433

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.16  E-value=3.5e-10  Score=99.88  Aligned_cols=178  Identities=7%  Similarity=0.015  Sum_probs=106.3

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.|.... . ..+.+|+++.|.|.+.+.|. .+.|+|++..+..... ..........|.|.++...|+|.|+|.|.|
T Consensus         4 ~~P~i~~~p-~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A            4 SKATLWAEP-G-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             CBCEEEEES-C-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCC-C-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeC
Confidence            346654333 3 37889999999999988766 9999999986643211 111234456899999999999999999999


Q ss_pred             CCCCc--eeeEEEEEecCCCCCCCCc--cceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC--EEE----c-cc
Q psy12426        294 SWGTD--KGTAKVTVLDIPSPPEGPL--KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR--WVP----M-GD  362 (616)
Q Consensus       294 ~~g~~--~~~~~l~v~~~p~~p~~~~--~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~--~~~----~-~~  362 (616)
                      ..|..  +..+.+.+...+..|.-..  ......+..+.|.|.....    + ..+  .|...+...  ...    . ..
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~----p-~~~--~W~k~g~~~~~~~~~~~~~~~~  152 (196)
T 2d3v_A           80 PAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLR----F-DRF--ILTEEGDHKLSWTLDSQLTPSG  152 (196)
T ss_dssp             TTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSC----C-SEE--EEEEC---CCEEEEECEECTTS
T ss_pred             CCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCC----C-CEE--EEEccCCcccccccccccccCC
Confidence            77643  4556777766432222000  1123456789999986432    2 222  332222111  100    0 01


Q ss_pred             cccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCEE
Q psy12426        363 VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT  402 (616)
Q Consensus       363 ~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~~  402 (616)
                      .....+.|.++...+.+.|+|.|.|..+....+..+..+.
T Consensus       153 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~  192 (196)
T 2d3v_A          153 QFQALFPVGPVTPSHRWMLRCYGSRRHILQVWSEPSDLLE  192 (196)
T ss_dssp             CEEEEEECCCCBTTBCEEEEEEEEETTEEEEECCCCCCEE
T ss_pred             CceeEEEeeecCcccCeeEEEEEEccCCCCccCCCCccEE
Confidence            2236789999999999999999999765433333344443

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.16  E-value=4.8e-11  Score=92.53  Aligned_cols=78  Identities=8%  Similarity=0.210  Sum_probs=62.3

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeec-cceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLR-PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~-G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||++....+..+.+.+|+++.|.|.+ +.|.|.|+|+|+|..+... ++|.....                         
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~-------------------------   68 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESI-------------------------   68 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEE-------------------------
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEec-------------------------
Confidence            46676554444899999999999999 7999999999999998865 66655421                         


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                         .....|.|.++...|+|.|.|.|.|
T Consensus        69 ---~~~~~L~I~~v~~~D~G~Y~C~a~~   93 (104)
T 1pd6_A           69 ---GAKRTLTISQCSLADDAAYQCVVGG   93 (104)
T ss_dssp             ---TTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             ---CCEEEEEECCCCcccCEEEEEEECC
Confidence               1234899999999999999999943

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.16  E-value=8.6e-09  Score=90.66  Aligned_cols=75  Identities=15%  Similarity=0.262  Sum_probs=51.2

Q ss_pred             ceEEEcCCeEEEEEEE--ee-ec-----CceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        225 DIKVRAGSNFEFDINV--IG-EP-----IPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~--~~-~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      ...+..+..+.|.+.+  .| .+     ..+++|++++..+...           ..+++..+...+.|.|+|.+.|..+
T Consensus       101 s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA-----------q~lT~sS~TateaG~YtV~VTn~~~  169 (304)
T 3shs_A          101 HFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT-----------QDITIQEFTADKNGVYTVKVWGESE  169 (304)
T ss_dssp             EEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS-----------SEEEECSCCGGGCEEEEEEEESSSG
T ss_pred             ceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc-----------cccceeeEEecCCeEEEEEEEcCCC
Confidence            3444556677787777  43 33     4699999999765422           2677788888899999999999877


Q ss_pred             Cc--eeeEEEEEecCC
Q psy12426        297 TD--KGTAKVTVLDIP  310 (616)
Q Consensus       297 ~~--~~~~~l~v~~~p  310 (616)
                      ..  +.+..+.+..++
T Consensus       170 ~c~~s~~~~i~~~~~~  185 (304)
T 3shs_A          170 DSAASASTKIMLATMN  185 (304)
T ss_dssp             GGCEEEEEEEEECEEE
T ss_pred             CcccccceEEEEEccc
Confidence            44  444445554443

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.16  E-value=1.9e-10  Score=89.08  Aligned_cols=82  Identities=20%  Similarity=0.353  Sum_probs=67.9

Q ss_pred             cCCeEEEEEEEeeecCceeEEEECCeeecccCcEEE--EecC---CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        230 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI--VNDD---KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       230 ~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~~~---~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      .+..+.|.|.+.|.|.|.+.|++++..+..+.+...  ...+   ....|.|.++...|.|.|+|.|.|..|....++.|
T Consensus        15 ~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   94 (103)
T 1wwb_X           15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             ECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence            567899999999999999999999999877655322  2111   12459999999999999999999999999999999


Q ss_pred             EEecCCC
Q psy12426        305 TVLDIPS  311 (616)
Q Consensus       305 ~v~~~p~  311 (616)
                      .+...|.
T Consensus        95 ~V~~~P~  101 (103)
T 1wwb_X           95 HFMGWPG  101 (103)
T ss_dssp             CCSCCCC
T ss_pred             EECCCCC
Confidence            8887764

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.16  E-value=2e-10  Score=104.30  Aligned_cols=131  Identities=15%  Similarity=0.004  Sum_probs=77.9

Q ss_pred             CCeEEeecccCCCeEEEEEEEEeCCC-----CC-CCCCCCCCEEec-cccCCCceeccCCcceEEEcCCeEEEEEEEeee
Q psy12426        171 TPKGKVLDLIEGNQYEFRVLAVNKGG-----PG-EPSDPTAPHIAR-AKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE  243 (616)
Q Consensus       171 ~~~l~i~~l~~~~~~~y~c~a~n~~g-----~~-~~s~~~~~~~~~-~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~  243 (616)
                      ...|.|.+++.+|+|.|.|.+.+..+     .. ... ....+.+. ....+|.+....+ ...+..|+.+.|.|.+.+.
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~-~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~~~  155 (230)
T 3n9g_H           78 TVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWG-QGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDY  155 (230)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEEC-CCEEEEECSSCCBCCEEEEECC-CCCCCTTCEEEEEEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEccCCCCcccccccccC-CCEEEEEEecCCCCCEEEecCC-CccccCCCCEEEEEEEEeE
Confidence            34799999999999999999987541     00 011 11123332 2234455432222 2224589999999999985


Q ss_pred             c--CceeEEEECCeeecccCc---EEEEecCC---ceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        244 P--IPTKEWLCNDITIISKDR---FKIVNDDK---STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       244 p--~~~~~W~~~~~~~~~~~~---~~~~~~~~---~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +  .+.+.|  ++..+.....   .....++.   .+.|.|......+ +.|+|.+.+..+.......+.+
T Consensus       156 ~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v  223 (230)
T 3n9g_H          156 FPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  223 (230)
T ss_dssp             BSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             ECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccC
Confidence            4  346899  5544321100   01111110   1378899998889 9999999997665554444443

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=4.9e-10  Score=87.02  Aligned_cols=95  Identities=17%  Similarity=0.283  Sum_probs=81.1

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.| ...+.++.+.+|+++.|.|. .+.|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.   
T Consensus         7 ~pp~~-~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2dku_A            7 GANCF-TEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD---   81 (103)
T ss_dssp             CCCCC-SSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE---
T ss_pred             CCCEe-EecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE---
Confidence            34555 44567889999999999999 58889999999999998888888888777778999999999999999998   


Q ss_pred             CCCCceeeEEEEEecCCCCCC
Q psy12426        294 SWGTDKGTAKVTVLDIPSPPE  314 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~~p~~p~  314 (616)
                       .|.....+.|.|...|.+|.
T Consensus        82 -~g~~~~~~~l~V~~~p~~p~  101 (103)
T 2dku_A           82 -IGQAQSRAQLLVQGRRSGPS  101 (103)
T ss_dssp             -CSSCBCCEEEEEECSCCCCS
T ss_pred             -eCCceEEEEEEEeCccCCCC
Confidence             57777788999998887764

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.16  E-value=5.7e-10  Score=99.96  Aligned_cols=160  Identities=14%  Similarity=0.041  Sum_probs=109.1

Q ss_pred             EcCCeEEEEEEEeee-cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        229 RAGSNFEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       229 ~~g~~~~l~c~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      -.++.+.|.|.+.+. |.+.+.|++++..+....++.+...+....|.|.++...|.|.|+|.+.|..|.......+.+.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            367788999999885 5889999999999988888888777777789999999999999999999988876666666543


Q ss_pred             c--------------------CCCCC-CCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEE--e-CCCCCEEEccc-
Q psy12426        308 D--------------------IPSPP-EGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKM--D-METGRWVPMGD-  362 (616)
Q Consensus       308 ~--------------------~p~~p-~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~--~-~~~~~~~~~~~-  362 (616)
                      .                    .|... ..+-......+..+.|.|......    ...+.+...  . ........... 
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p----~p~v~W~~~~~~~~~~~~~~~~~~~  170 (212)
T 2r15_A           95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDP----PPEVSWLKNEKALAQTDHCNLKFEA  170 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSS----CCEEEEEETTEEECCCSSEEEEEET
T ss_pred             eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCC----CceEEEEECCeECccCCCEEEEEcC
Confidence            1                    11100 011123445677899999864322    122222211  0 11111111111 


Q ss_pred             cccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        363 VSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       363 ~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      .....+.|.++...+.+.|+|.|.|..|..
T Consensus       171 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~  200 (212)
T 2r15_A          171 GRTAYFTINGVSTADSGKYGLVVKNKYGSE  200 (212)
T ss_dssp             TTEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCEEEEEEcCcchHHCeEEEEEEEcCCCcE
Confidence            234578999999999999999999999864

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.16  E-value=4e-10  Score=101.09  Aligned_cols=164  Identities=18%  Similarity=0.238  Sum_probs=112.7

Q ss_pred             cceEEEcCCeEEEEEEEeeec----CceeEEEEC----------------Ceeecc-----cCcEEEEe---cCCceEEE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEP----IPTKEWLCN----------------DITIIS-----KDRFKIVN---DDKSTKLK  275 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p----~~~~~W~~~----------------~~~~~~-----~~~~~~~~---~~~~~~l~  275 (616)
                      ..+.+.+|+.+.|.|.+.+.+    .+.+.|++.                +..+..     ..++.+..   .....+|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            567899999999999999887    469999983                333321     23444322   12346899


Q ss_pred             ecCCCCCCcEEEEEEEEcCCCCceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCC
Q psy12426        276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG  355 (616)
Q Consensus       276 i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~  355 (616)
                      |.+++..|.|.|+|.+.|..|.......|.|..+|..+..+.......+..+.|.|....   +.+...+  .|...+..
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~---g~p~~~v--~W~~~~~~  162 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKE---GSLPLQF--EWQKLSDS  162 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSB---CCSSCEE--EEEECSTT
T ss_pred             EccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCC---CCCCCEE--EEEECCCC
Confidence            999999999999999999988888888899988877655322333456778999998631   1222323  33222111


Q ss_pred             CEEEc---cccccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        356 RWVPM---GDVSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       356 ~~~~~---~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      .....   .......+.|.++...+.+.|+|.|.|..|..
T Consensus       163 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~  202 (214)
T 3jz7_A          163 QTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD  202 (214)
T ss_dssp             CCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE
Confidence            11110   11234589999999999999999999998865

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.15  E-value=3.2e-10  Score=98.93  Aligned_cols=169  Identities=10%  Similarity=-0.005  Sum_probs=105.4

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.+... +. ..+.+|+++.|.|.+.+ +.+.+.|++++...       .   .....|.|.++...|.|.|+|.+.|
T Consensus         7 ~~P~i~~~-p~-~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-------~---~~~~~L~i~~v~~~D~G~Y~C~a~n   73 (184)
T 2gi7_A            7 PKPSLQAL-PS-SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-------Y---QDQAVLFIPAMKRSLAGRYRCSYQN   73 (184)
T ss_dssp             CCCEEEEE-SC-SEEETTCCEEEEEECST-TCSEEEEEETTTCC-------E---ESSSEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeC-CC-ccccCCCcEEEEEeCCC-CCCEEEEEECCccc-------c---CcccEEEECcCChhhCceEEEEEEc
Confidence            45665433 23 37899999999999987 77899999998641       1   1234899999999999999999999


Q ss_pred             CCCC--ceeeEEEEEecCCCCCCCCc--cceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEE
Q psy12426        294 SWGT--DKGTAKVTVLDIPSPPEGPL--KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR  369 (616)
Q Consensus       294 ~~g~--~~~~~~l~v~~~p~~p~~~~--~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~  369 (616)
                      ..|.  .+..+.+.+...+..|.-..  ......+..+.|.|.....    + ..|.+... ................+.
T Consensus        74 ~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~----~-~~~~w~k~-g~~~~~~~~~~~~~~~L~  147 (184)
T 2gi7_A           74 GSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYG----F-DQFALYKE-GDPAPYKNPERWYRASFP  147 (184)
T ss_dssp             TTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSC----C-CEEEEEEC-CCCTTSCCCCEEEEESSS
T ss_pred             CCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCC----C-cEEEEEEC-CCcCcceecCCCceEEEE
Confidence            7763  24456677755332222100  1122357789999985322    2 23333221 111110000112234577


Q ss_pred             eccccCCCeEEEEEEEEecCcCCCCccccCCE
Q psy12426        370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPI  401 (616)
Q Consensus       370 i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~  401 (616)
                      |.++...+.+.|+|.|.|..+....+..+..+
T Consensus       148 i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~  179 (184)
T 2gi7_A          148 IITVTAAHSGTYRCYSFSSRDPYLWSAPSDPL  179 (184)
T ss_dssp             EEEETTCCSEEEEEEEECTTSTTBCCCCCCCE
T ss_pred             EccCCccCCeEEEEEEEeCCCCcccCCCCCcE
Confidence            88889999999999999987654443334443

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.15  E-value=2.4e-10  Score=91.37  Aligned_cols=101  Identities=24%  Similarity=0.251  Sum_probs=80.0

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCEEEccccccceEEeccccCCCeEEEEEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMGDVSGTYTRAENLIEGHDYNFRVKAV  386 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  386 (616)
                      ..|.+|.+ +.+.....+.+.|.|.++. +++..+..|.|+++.... ..|..........+.+.+|.+++.|.|+|.|.
T Consensus        16 ~~P~~P~~-~~~~~~~~~sv~l~W~~p~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~   93 (118)
T 1x3d_A           16 CEPDIPNP-PRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSAR   93 (118)
T ss_dssp             SCCCCCCC-CEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEECCEE
T ss_pred             CCCcCCCC-cEEeccCCCEEEEEECCCC-CCCCcceEEEEEEecCCCCCCeEEeeccCCcEEEeCCCCCCCEEEEEEEEE
Confidence            46677766 6778889999999999876 456789999999987655 57876655556889999999999999999999


Q ss_pred             ecCcCCCCccccCCEEccCCCCCCCCC
Q psy12426        387 NKIGESLPLVCQSPITAKDPFGRPDRP  413 (616)
Q Consensus       387 n~~g~~~~~~~s~~~~~~~~~~~p~~p  413 (616)
                      |..|.+.++   ..+.+.+...+|.+|
T Consensus        94 n~~G~s~~S---~~~~~~T~~~~P~~P  117 (118)
T 1x3d_A           94 NDYGTSGFS---EEVLYYTSGCSGPSS  117 (118)
T ss_dssp             ESSCBCCCC---CCEEEECSCCCCCCC
T ss_pred             ECCCCCCCc---cCEEEEcCCCCCccC
Confidence            999988874   445555556666655

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=1.4e-10  Score=92.73  Aligned_cols=95  Identities=24%  Similarity=0.395  Sum_probs=79.1

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecc-cCcEEEEecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      .+|.| ...+....+..|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+...+   .|.|.++...|.|.|+|.|.
T Consensus         7 ~pP~i-~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A            7 GPPVI-RQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             CSCCC-SBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEEE
T ss_pred             CCCEE-EcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEEE
Confidence            45666 4456778899999999999999999999999999988753 4566655544   89999999999999999999


Q ss_pred             cCCCCceeeEEEEEecCCCC
Q psy12426        293 NSWGTDKGTAKVTVLDIPSP  312 (616)
Q Consensus       293 n~~g~~~~~~~l~v~~~p~~  312 (616)
                      |..|.....+.|.|...+.+
T Consensus        83 n~~g~~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           83 TPSGEATWSAYIEVQEFGVP  102 (118)
T ss_dssp             CSSCEEEEECCEEEECCSCC
T ss_pred             cCCCcEEEEEEEEEEeCCCC
Confidence            99999888888888776543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.15  E-value=8.6e-10  Score=98.90  Aligned_cols=167  Identities=7%  Similarity=-0.035  Sum_probs=104.6

Q ss_pred             cCCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCce--EEEecCCCCCCcEEEEEE
Q psy12426        213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       213 ~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~l~i~~l~~~~~g~y~c~  290 (616)
                      ..+|.|.... . ..+.+|++++|.|.+.+ +.+.+.|+|++..+..... .........  .|.|.++...|+|.|+|.
T Consensus         7 ~~~P~i~~~p-~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   82 (218)
T 1uct_A            7 FPMPFISAKS-S-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQ   82 (218)
T ss_dssp             SCCCCEEESS-C-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEecC-C-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEEEEE
Confidence            3456664433 3 47899999999999987 6789999999876542221 111112234  899999999999999999


Q ss_pred             EEcCCCCc--eeeEEEEEecCCCCCC---CCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE-EEccccc
Q psy12426        291 VKNSWGTD--KGTAKVTVLDIPSPPE---GPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPMGDVS  364 (616)
Q Consensus       291 a~n~~g~~--~~~~~l~v~~~p~~p~---~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~  364 (616)
                      +.|..|..  +....+.+...+..|.   .+ ......+..++|.|.....    +...|.+.  ..+.... .......
T Consensus        83 a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~----~~~~~~W~--k~g~~~~~~~~~~~~  155 (218)
T 1uct_A           83 YRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHI----PFDRFSLA--KEGELSLPQHQSGEH  155 (218)
T ss_dssp             EEETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSS----CCSEEEEE--ETTCSSCCSEEECSS
T ss_pred             EEcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCC----CCCEEEEE--ECCCcccccccCCCc
Confidence            99976633  3456667765333222   11 1233567889999953221    12233332  2221110 0111234


Q ss_pred             cceEEeccccCCCeEEEEEEEEecCc
Q psy12426        365 GTYTRAENLIEGHDYNFRVKAVNKIG  390 (616)
Q Consensus       365 ~~~~~i~~L~~~~~y~~~v~a~n~~g  390 (616)
                      ...+.|.++...+.+.|+|.|.|...
T Consensus       156 ~~~L~I~~v~~~D~G~Y~C~a~n~~~  181 (218)
T 1uct_A          156 PANFSLGPVDLNVSGIYRCYGWYNRS  181 (218)
T ss_dssp             SEEEECCSCCGGGCEEEEEEEECTTS
T ss_pred             cCEEEEccCCcccCEEEEEEEEcCCC
Confidence            56799999999999999999998643

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.15  E-value=2.9e-10  Score=101.60  Aligned_cols=163  Identities=16%  Similarity=0.154  Sum_probs=112.5

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeec------------ccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      ..+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.            ...++.+..    ..|.|.++...|.|.|+
T Consensus         9 ~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~~~d~G~Y~   84 (209)
T 1nbq_A            9 SSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVTREDTGTYT   84 (209)
T ss_dssp             CSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCCTTSCSEEE
T ss_pred             cCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCCHHHCcEEE
Confidence            34566788999999999999999999999999875521            123444332    48999999999999999


Q ss_pred             EEEEcCCCC--ceeeEEEEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEE--------
Q psy12426        289 LAVKNSWGT--DKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV--------  358 (616)
Q Consensus       289 c~a~n~~g~--~~~~~~l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~--------  358 (616)
                      |.+.|..|.  ......+.+..+|..+..+.......+..+.|.|.....   .+...  +.|...+...-.        
T Consensus        85 C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~---~p~~~--v~W~~~~~~~~~~~~~~~~~  159 (209)
T 1nbq_A           85 CMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDG---SPPSE--YTWFKDGIVMPTNPKSTRAF  159 (209)
T ss_dssp             EEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSC---BSCCE--EEEEETTCCCCSCSSSSSSC
T ss_pred             EEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCC---CCCce--eEEEECCeeCCCccccceee
Confidence            999998663  345667777777776655444455667889999985221   12222  333322111000        


Q ss_pred             ----EccccccceEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        359 ----PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       359 ----~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                          .........+.|.++...+.+.|+|.|.|..|..
T Consensus       160 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          160 SNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             TTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             eccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence                0001134578999999988999999999999875

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.15  E-value=3.9e-11  Score=115.50  Aligned_cols=210  Identities=12%  Similarity=0.005  Sum_probs=112.9

Q ss_pred             eEEeecccCCCeEEEEEEEEeCCCCCCCCCCCCCEEeccccCCCceeccCCcceEEEcCCeEEEEEEEeee-cCc---ee
Q psy12426        173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIP---TK  248 (616)
Q Consensus       173 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~s~~~~~~~~~~~~~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~---~~  248 (616)
                      .|.|.....+|.|.|+|.|.|..+.....   ..+........|.+....+....+..|+.+.|.|.+.+. |.+   .+
T Consensus        73 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~---~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i  149 (323)
T 2wqr_A           73 ELTLSQKHWLSDRTYTCQVTYQGHTFEDS---TKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQL  149 (323)
T ss_dssp             EEEEEHHHHHTTCCEEEEEEETTEEEEEE---ECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEE
T ss_pred             EEEEcHHHcCCCCcEEEEEEeCCCCccee---eecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEE
Confidence            46777777779999999999976642211   000001112234333333444457789999999999986 455   89


Q ss_pred             EEEECC-eeecccCcEEEEec-C---CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe-cCCCCCCCCccce--
Q psy12426        249 EWLCND-ITIISKDRFKIVND-D---KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL-DIPSPPEGPLKPS--  320 (616)
Q Consensus       249 ~W~~~~-~~~~~~~~~~~~~~-~---~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~-~~p~~p~~~~~~~--  320 (616)
                      .|++++ ..+........... +   ....|.|.++...|.|.|+|.|.|..+.......+... ....+|.  +.+.  
T Consensus       150 ~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~--v~~~~~  227 (323)
T 2wqr_A          150 TWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPE--VYAFAT  227 (323)
T ss_dssp             EEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCE--EEEEEC
T ss_pred             EEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCE--EEEeCC
Confidence            999975 43322221111111 1   12479999999999999999999976433222222211 0111221  1111  


Q ss_pred             ---eecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC----CCEEE-----ccc---cccceEEeccccCCCeEEEEEEE
Q psy12426        321 ---NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET----GRWVP-----MGD---VSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       321 ---~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~----~~~~~-----~~~---~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                         ...+..+.|.|...... ...+   .+.|...+.    .....     ...   .....+.|......+.+.|.|.|
T Consensus       228 ~~~~~~g~~~~l~C~~~g~~-p~~~---~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a  303 (323)
T 2wqr_A          228 PEWPGSRDKRTLACLIQNFM-PEDI---SVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRA  303 (323)
T ss_dssp             CCCTTCTTEEEEEEEEEEEB-SSCC---EEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEE
T ss_pred             ChHHhcCCcEEEEEEeeeee-CCCc---EEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEE
Confidence               11267888999753211 1111   233332211    00000     000   01234666666655567788999


Q ss_pred             EecCcC
Q psy12426        386 VNKIGE  391 (616)
Q Consensus       386 ~n~~g~  391 (616)
                      .|..+.
T Consensus       304 ~n~~~~  309 (323)
T 2wqr_A          304 VHEAAS  309 (323)
T ss_dssp             ECTTST
T ss_pred             EeCCCC
Confidence            887765

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.15  E-value=1.8e-10  Score=89.17  Aligned_cols=88  Identities=18%  Similarity=0.190  Sum_probs=63.0

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||+|..  ...  ...|+.+.|.|.+.|+|.|.|+|+|+|+.|..+..+.-....                       ..
T Consensus         4 pP~i~~--~~~--~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~-----------------------~~   56 (103)
T 1wwb_X            4 APTITF--LES--PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHV-----------------------TN   56 (103)
T ss_dssp             CCCCCC--CCC--CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEE-----------------------EC
T ss_pred             CCEEEe--ccC--ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEe-----------------------cC
Confidence            677752  222  356889999999999999999999999998854332121100                       00


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .......|.|.++...|.|.|.|.|.|..|....+
T Consensus        57 ~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   91 (103)
T 1wwb_X           57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ   91 (103)
T ss_dssp             SSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEE
Confidence            00112459999999999999999999999976544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	616
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	1e-29
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	6e-08
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	1e-06
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	7e-06
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	1e-22
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	2e-18
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	5e-09
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	6e-08
d1x5ya1	98	b.1.2.1 (A:8-105) Myosin binding protein C, fast-t	2e-07
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	7e-22
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	1e-15
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	4e-08
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	6e-08
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	5e-05
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	2e-20
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	3e-20
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	4e-08
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	5e-08
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	3e-20
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	1e-12
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	4e-06
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	5e-06
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	2e-05
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	3e-19
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	1e-12
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	1e-06
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	2e-06
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	2e-04
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	3e-19
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	4e-11
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	7e-09
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	3e-08
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	4e-19
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	5e-13
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	8e-05
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	9e-05
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	2e-04
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	1e-18
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	4e-18
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-06
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	1e-05
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	1e-04
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	1e-18
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	1e-13
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	2e-06
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	1e-05
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	6e-05
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-18
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	2e-18
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	1e-15
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	7e-07
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	3e-06
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	7e-06
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	3e-18
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	4e-16
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	1e-06
d2crma1	107	b.1.2.1 (A:8-114) Fibronectin type-III domain cont	3e-05
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	7e-18
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	1e-17
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	6e-06
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	3e-05
d2crza1	97	b.1.2.1 (A:8-104) Fibronectin type-III domain cont	1e-04
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	9e-18
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	1e-12
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	8e-05
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	9e-05
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	4e-04
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-17
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	4e-13
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	7e-07
d1j8ka_	94	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-06
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	4e-17
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	5e-12
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	3e-06
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	2e-05
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	0.003
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	8e-17
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	2e-15
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	5e-06
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	2e-05
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	2e-05
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	1e-16
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	5e-09
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	2e-08
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	4e-08
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	2e-16
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	2e-14
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	2e-06
d1bpva_	104	b.1.2.1 (A:) Type I titin module {Human (Homo sapi	2e-06
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	3e-16
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	1e-08
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	1e-05
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	4e-05
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	4e-16
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	2e-15
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	3e-06
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	3e-06
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	2e-05
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	1e-15
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	1e-07
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	3e-05
d1cd9b2	106	b.1.2.1 (B:108-213) Granulocyte colony-stimulating	4e-04
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	2e-15
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	3e-14
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	2e-06
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	2e-06
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	4e-15
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	3e-12
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	2e-05
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	2e-05
d1fnha3	89	b.1.2.1 (A:183-271) Fibronectin, different Fn3 mod	0.004
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	4e-15
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	4e-13
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	2e-05
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	3e-05
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	5e-15
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	6e-11
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	0.001
d1fnha2	90	b.1.2.1 (A:93-182) Fibronectin, different Fn3 modu	0.001
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	6e-15
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	6e-12
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	2e-05
d1qr4a1	87	b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)	4e-05
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	8e-15
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	3e-12
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	6e-06
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	1e-05
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	9e-15
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	4e-12
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	8e-05
d1qr4a2	88	b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallu	8e-05
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	9e-15
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	4e-06
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	6e-04
d2d9qb2	105	b.1.2.1 (B:204-308) Granulocyte colony-stimulating	0.003
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-14
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-11
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-06
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-06
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	2e-14
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	7e-10
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	4e-04
d1tena_	90	b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId	4e-04
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	2e-14
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	6e-12
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	1e-05
d1ueya_	127	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	2e-05
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	3e-14
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	3e-14
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	5e-05
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	0.003
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	0.003
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	3e-14
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	1e-10
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	0.002
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	0.002
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	5e-14
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	1e-10
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	3e-06
d2cuia1	101	b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens)	2e-05
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	5e-14
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	2e-06
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	5e-06
d1iarb2	101	b.1.2.1 (B:97-197) Interleukin-4 receptor alpha ch	3e-05
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	1e-13
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	9e-11
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	6e-05
d1fnha1	90	b.1.2.1 (A:3-92) Fibronectin, different Fn3 module	6e-05
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	1e-13
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	2e-11
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	4e-05
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	4e-05
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	1e-13
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	3e-08
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	2e-04
d1qg3a2	103	b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Hum	2e-04
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	2e-13
d1uc6a_	109	b.1.2.1 (A:) Ciliary neurotrophic factor receptor	5e-10
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	3e-13
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	1e-11
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	2e-05
d1fyhb1	98	b.1.2.1 (B:12-109) Interferon-gamma receptor alpha	5e-05
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	3e-13
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	2e-08
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	1e-05
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	1e-05
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	3e-13
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	3e-10
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	7e-07
d1cfba1	100	b.1.2.1 (A:610-709) Neuroglian, two amino proximal	2e-06
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	3e-13
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	1e-10
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	2e-05
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	6e-05
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	5e-13
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	6e-13
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	1e-08
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	6e-04
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	0.001
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	6e-13
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	3e-11
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	2e-06
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	2e-06
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	7e-13
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-06
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	4e-06
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	4e-05
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	7e-13
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	2e-08
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	0.003
d2b5ib2	104	b.1.2.1 (B:104-207) Interleukin-2 receptor beta ch	0.003
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	7e-13
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	5e-08
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	0.003
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	9e-13
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	1e-08
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	0.004
d1x5aa1	94	b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse	0.004
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	1e-12
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	4e-08
d1x4xa1	93	b.1.2.1 (A:8-100) Fibronectin type-III domain cont	5e-04
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	2e-12
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	5e-09
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	3e-07
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	4e-06
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	2e-12
d1f6fb2	103	b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattu	4e-11
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-12
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	4e-12
d1wfua_	120	b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat	3e-09
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-12
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	6e-12
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	1e-07
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	7e-12
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	5e-10
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	4e-05
d1k85a_	88	b.1.2.1 (A:) Fibronectin type III domain from chit	2e-04
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	9e-12
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	4e-09
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	5e-05
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	6e-05
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	1e-11
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	2e-11
d1cd9b1	107	b.1.2.1 (B:1-107) Granulocyte colony-stimulating f	0.001
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	2e-11
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	2e-09
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	3e-05
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	5e-05
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-11
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	6e-11
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	4e-08
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	0.001
d1y6kr1	99	b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10	0.001
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	6e-11
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-10
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	1e-10
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	1e-07
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	3e-04
d2ibga1	95	b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit	4e-04
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	1e-10
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-09
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	4e-05
d2fnba_	95	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-04
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	1e-10
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	3e-10
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	1e-04
d1bqua2	115	b.1.2.1 (A:100-214) Cytokine receptor gp130 cytoki	7e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-10
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	2e-10
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	4e-10
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	6e-05
d1fnfa1	94	b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 m	1e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-10
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	4e-10
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	1e-07
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	8e-04
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	9e-04
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	5e-10
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	1e-06
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	1e-04
d2dtge1	102	b.1.2.1 (E:808-909) Insulin receptor {Human (Homo	9e-04
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	6e-10
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	4e-07
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	1e-05
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	2e-05
d2gysa2	114	b.1.2.1 (A:104-217) Common beta-chain in the GM-CS	7e-10
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-10
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	8e-10
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	8e-08
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	1e-05
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	2e-05
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	8e-10
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	5e-07
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	0.002
d1axib2	106	b.1.2.1 (B:131-236) Growth hormone receptor {Human	0.004
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	9e-10
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	2e-09
d1x5ia1	113	b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [	2e-06
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	2e-09
d3d48r2	104	b.1.2.1 (R:101-204) Prolactin receptor {Human (Hom	4e-08
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	3e-09
d2b5ic1	95	b.1.2.1 (C:130-224) Cytokine receptor common gamma	4e-08
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	3e-09
d2dtge3	125	b.1.2.1 (E:468-592) Insulin receptor {Human (Homo	4e-07
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	5e-09
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	1e-06
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	3e-06
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	2e-04
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	8e-09
d2gysa4	100	b.1.2.1 (A:317-416) Common beta-chain in the GM-CS	2e-05
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	9e-09
d2haza1	101	b.1.2.1 (A:489-589) Neural cell adhesion molecule	4e-07
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	5e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	9e-08
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	1e-07
d1wj3a_	117	b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo s	7e-05
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	1e-07
d2cuha1	102	b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)	1e-06
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-07
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-07
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	4e-07
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	6e-07
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	1e-05
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	6e-04
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	2e-06
d1v5ja_	108	b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId	9e-05
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	3e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	8e-06
d1erna2	105	b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor	1e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	3e-05
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	3e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	6e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	7e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	8e-05
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	1e-04
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-04
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-04
d2cspa1	117	b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Ho	4e-04
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	4e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	6e-04
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	7e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.001
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	0.001
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.003

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-29
 Identities = 27/200 (13%), Positives = 58/200 (29%), Gaps = 12/200 (6%)

Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 368
            PS P  P    + + S   L+W+ P D  G +I HY+V          +        Y 
Sbjct: 2   NPSVPLDP-ISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELF----ELDYC 55

Query: 369 RAENLIEGHDYNFRVKAVNKIGESLPL----VCQSPITAKDPFGRPDRPGQPTVTDWGKD 424
                +    ++   ++ +    +         +     K          + +     +D
Sbjct: 56  LKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFED 115

Query: 425 HVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVI 484
           ++      P+          +           +      N  +  +  L+    Y   + 
Sbjct: 116 YLHNVVFVPRPSRKRRSLGDVGNAG--NNEEHRPFEKVVNKESLVISGLRHFTGYRIELQ 173

Query: 485 AVNKGGPGEPSKASAPVTCK 504
           A N+  P E    +A V+ +
Sbjct: 174 ACNQDTPEERCSVAAYVSAR 193

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 6e-08
 Identities = 13/136 (9%), Positives = 31/136 (22%), Gaps = 16/136 (11%)

Query: 93  LIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSI---------- 142
            +    +     + +     +     +     +       ++  L + S           
Sbjct: 60  KLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHN 119

Query: 143 ------YEQLKRSGLFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG 196
                   + +RS             +  +   +     +  L     Y   + A N+  
Sbjct: 120 VVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDT 179

Query: 197 PGEPSDPTAPHIARAK 212
           P E     A   AR  
Sbjct: 180 PEERCSVAAYVSARTM 195

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 5/102 (4%)

Query: 30  PVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKG-----KVLDLIEGNHPIWEKCAQTEGD 84
           P             + R  +E         P+       + D+    +    +  +   +
Sbjct: 94  PKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVN 153

Query: 85  TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK 126
                +  L     Y   + A N+  P E     A   AR  
Sbjct: 154 KESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTM 195

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 7e-06
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIK 605
            P  P  P +       I +KW+ P    G+ I  Y V    +     + 
Sbjct: 2   NPSVPLDPISVSNSSSQIILKWKPPSDPNGN-ITHYLVFWERQAEDSELF 50

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.3 bits (223), Expect = 1e-22
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKACIVPANITAT 468
              P   TV D       L+W PP + G   I  Y++E   +    W  A   P      
Sbjct: 2   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 61

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
           +V DL  G    FRV+ VN  G  EP+    PVT +
Sbjct: 62  TVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 97

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.8 bits (193), Expect = 2e-18
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT--Y 367
            S P   L   ++T ++  L+WR P   G   I  Y+VE     +  WVP          
Sbjct: 2   TSAP-QHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCG 60

Query: 368 TRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD 405
              ++L  G    FRV  VN  G S P     P+T ++
Sbjct: 61  FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRE 98

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (123), Expect = 5e-09
 Identities = 17/76 (22%), Positives = 26/76 (34%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W    +       G +++        W    +   +     V DL  G +  FRV+ VN 
Sbjct: 22  WRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNI 81

Query: 109 GGPGEPSDPTAPHIAR 124
            G  EP+    P   R
Sbjct: 82  AGRSEPATLLQPVTIR 97

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.7 bits (115), Expect = 6e-08
 Identities = 15/57 (26%), Positives = 20/57 (35%)

Query: 154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
                  W    +   +     V DL  G +  FRV+ VN  G  EP+    P   R
Sbjct: 41  CLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 97

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 15/57 (26%), Positives = 20/57 (35%)

Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
              P      DV      +KW+ P   G   I GY VE     S  W+    +P+  
Sbjct: 2   TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVER 58

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.7 bits (219), Expect = 7e-22
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 4/101 (3%)

Query: 407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY--GPWEKAC-IVPA 463
              P+ P +PT++   +  V + W P   +GG PI  + +E K     G W  A   +P 
Sbjct: 8   LSPPEAPDRPTISTASETSVYVTWIPRG-NGGFPIQSFRVEYKKLKKVGDWILATSAIPP 66

Query: 464 NITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
           +  +  +  L++G  Y+FRV A+N  G  EPS  S P    
Sbjct: 67  SRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (173), Expect = 1e-15
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD- 362
              L  P  P+ P   S  +++S  + W    + G       V  K   + G W+     
Sbjct: 5   HGRLSPPEAPDRP-TISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSA 63

Query: 363 --VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
              S        L +G  Y FRV+A+N +GES P     P    
Sbjct: 64  IPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (117), Expect = 4e-08
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 2/98 (2%)

Query: 114 PSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQT-EGDTP 172
           P  P  P I+ A +    ++      +  +        + +      W            
Sbjct: 11  PEAPDRPTISTASETSV-YVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 69

Query: 173 KGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
             ++  L +G  Y+FRV A+N  G  EPS P+ P++  
Sbjct: 70  SVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (116), Expect = 6e-08
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 78  CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
            +         ++  L +G  Y+FRV A+N  G  EPS P+ P++  
Sbjct: 61  TSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVS 107

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (94), Expect = 5e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
           P  P +P  +   +  + + W  P  NGG  I+ + VE ++        +    I    
Sbjct: 11  PEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR 68

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 2e-20
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 301 TAKVTVLDIPSPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 359
           +A + V  +P  PE P    S + + + NL W  P  DG + ++ Y++E  +      V 
Sbjct: 2   SAHLRVRQLPHAPEHPVATLSTVERRAINLTWTKP-FDGNSPLIRYILEMSENNAPWTVL 60

Query: 360 MGDVSGTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD 405
           +  V    T      L+    Y FR+ AVN +G+         ++  +
Sbjct: 61  LASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPE 108

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 3e-20
 Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 409 RPDRPGQPTVT--DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANI 465
            P  P  P  T     +  ++L WT P  DG SP+ +YI+E      P       V    
Sbjct: 10  LPHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKA 68

Query: 466 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           T+ +V  L     Y+FR+ AVN  G G+ SK +  V+
Sbjct: 69  TSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS 105

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 4e-08
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 151 LFDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
           L    +  P     A  +       V  L+    Y+FR+ AVN  G G+ S  T  
Sbjct: 48  LEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTER 103

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 5e-08
 Identities = 15/50 (30%), Positives = 20/50 (40%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
           N P     A  +       V  L+    Y+FR+ AVN  G G+ S  T  
Sbjct: 54  NAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTER 103

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 3e-20
 Identities = 17/106 (16%), Positives = 31/106 (29%)

Query: 400 PITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC 459
           P   +     P   G  + ++     + + W  P +  G      I  ++          
Sbjct: 1   PQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTH 60

Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            +P       V  L     Y   V A+   G G+ S ++      P
Sbjct: 61  YLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTISSGVPP 106

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 1e-12
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW--VPMGD 362
           T  D+P P  G L  S I  +S  + W+ P +  G  +  Y +   +             
Sbjct: 6   THEDVPGPV-GHLSFSEILDTSLKVSWQEPGEKNGI-LTGYRISWEEYNRTNTRVTHYLP 63

Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
                 R   L     Y   V A+   G+   
Sbjct: 64  NVTLEYRVTGLTALTTYTIEVAAMTSKGQGQV 95

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
           VPG       +++    +K+ WQ+P    G  + GY +   E            P  T
Sbjct: 10  VPGPVGHLSFSEILDTSLKVSWQEPGEKNGI-LTGYRISWEEYNRTNTRVTHYLPNVT 66

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 5e-06
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W++  +  G    G  +   E N             T + +V  L     Y   V A+  
Sbjct: 31  WQEPGEKNGIL-TGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTS 89

Query: 109 GGPGEPSDPT 118
            G G+ S  T
Sbjct: 90  KGQGQVSAST 99

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 10/46 (21%), Positives = 14/46 (30%)

Query: 159 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
                       T + +V  L     Y   V A+   G G+ S  T
Sbjct: 54  TNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAST 99

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 3e-19
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P +         G+  V L W  P++  G  I +Y I+   K    +    + A  T  +
Sbjct: 4   PSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRAT 62

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
           V  LK G  Y F+V A    G G  S+A    T KP
Sbjct: 63  VSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGKP 98

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 1e-12
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 3/86 (3%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYT 368
           PS     ++     ++S +L W+ P    G  IL Y ++  + +             T  
Sbjct: 4   PSQVVV-IRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRA 61

Query: 369 RAENLIEGHDYNFRVKAVNKIGESLP 394
               L  G  Y F+V+A    G    
Sbjct: 62  TVSGLKPGTRYVFQVRARTSAGCGRF 87

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 11/50 (22%), Positives = 18/50 (36%)

Query: 155 FHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
           +      +  +  +  T +  V  L  G +Y F+V A    G G  S   
Sbjct: 42  YEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAM 91

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 11/48 (22%), Positives = 17/48 (35%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
                +  +  +  T +  V  L  G +Y F+V A    G G  S   
Sbjct: 44  KDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAM 91

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
            P +          +  + + WQ+P    G  I  YE++  E+        T   + T
Sbjct: 3   APSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTT 59

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 3e-19
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 401 ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWE---- 456
           I++  P   P  P    +++ G   V L++ P      S     +  +    G  E    
Sbjct: 2   ISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLL 61

Query: 457 -KACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
                   +  +  VPDL     Y FR+  VN  G   PS+ S  + 
Sbjct: 62  IHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 108

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 4e-11
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-------VPM 360
           ++P PP      SNI   S  L++R    DG T I  ++VE      G            
Sbjct: 9   ELPGPPTNL-GISNIGPRSVTLQFRPG-YDGKTSISRWLVEAQVGVVGEGEEWLLIHQLS 66

Query: 361 GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPIT 402
            +         +L     Y+FR++ VN +G S P      I 
Sbjct: 67  NEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQ 108

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 7e-09
 Identities = 18/96 (18%), Positives = 28/96 (29%)

Query: 111 PGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD 170
           PG P++    +I        +              ++            +       E D
Sbjct: 11  PGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPD 70

Query: 171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
               +V DL     Y FR+  VN  G   PS P+  
Sbjct: 71  ARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRK 106

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 3e-08
 Identities = 16/52 (30%), Positives = 20/52 (38%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
           EG   +       E D    +V DL     Y FR+  VN  G   PS P+  
Sbjct: 55  EGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRK 106

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 4e-19
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 1/97 (1%)

Query: 406 PFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANI 465
               PD P  P + +  K+ + L+W  P  D GS I  +++E     G  E       + 
Sbjct: 7   LSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMGSQ 65

Query: 466 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
               +  L      +FR+ A N  G    S+     T
Sbjct: 66  KQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYT 102

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 5e-13
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 1/99 (1%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
           T+   P  P  P + +N TK+S  L+W+AP D+G       +        G +      S
Sbjct: 6   TLSCEPDIPNPP-RIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGS 64

Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITA 403
               +   L       FR+ A N  G S         T+
Sbjct: 65  QKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 103

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 8e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 123
                E C    G   + K+  L      +FR+ A N  G    S+    + +
Sbjct: 51  GKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 103

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 9e-05
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 209
            E C    G   + K+  L      +FR+ A N  G    S+    + +
Sbjct: 55  GEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 103

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
            P  P+ P   +  K+ + ++W+ P S+ GS I+ + +E  E              + 
Sbjct: 10  EPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQK 66

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (196), Expect = 1e-18
 Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWE-KACIVPANITA 467
            P  P +P VTD  K+ V L W P    G  P S YIIE   +      +        T 
Sbjct: 15  LPGPPSKPQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVANHVKTTL 73

Query: 468 TSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            +V  L+    Y F V A+N  G  +PS  S PV  + 
Sbjct: 74  YTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (192), Expect = 4e-18
 Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 2/106 (1%)

Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM 360
                + D+P PP  P + +++TK+S  L W+           + +       +  W  +
Sbjct: 7   GKNYDLSDLPGPPSKP-QVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTV 65

Query: 361 GD-VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD 405
            + V  T      L     Y F V+A+N  G S P     P+  +D
Sbjct: 66  ANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQD 111

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W+             +    +     W +       T    V  L     Y F V A+N 
Sbjct: 36  WQPGTPGTLPASAYIIEAFSQSVSNSW-QTVANHVKTTLYTVRGLRPNTIYLFMVRAINP 94

Query: 109 GGPGEPSDPTAPHIAR 124
            G  +PS  + P   +
Sbjct: 95  QGLSDPSPMSDPVRTQ 110

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 12/50 (24%), Positives = 17/50 (34%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
             +       T    V  L     Y F V A+N  G  +PS  + P   +
Sbjct: 61  SWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
           +PG PSKP+ TDV K+ + + WQ        A         +  S  W  +      T
Sbjct: 15  LPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTT 72

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 1e-18
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 4/120 (3%)

Query: 388 KIGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE 447
           +IG+  P     PI  +     P  P      +     V L W PP    G  ++  I  
Sbjct: 1   RIGDGSP--SHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITH 58

Query: 448 K-KPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
           +            ++  +    +   LK    Y FR+ A  + G GE ++A   VT + R
Sbjct: 59  RLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALV-VTTEKR 117

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 1e-13
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
           T+ D+P PP G +    +  +S  L W+ P    G  + + +  +++  T     +  ++
Sbjct: 16  TLDDVPGPPMG-ILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLA 74

Query: 365 GTYTRA--ENLIEGHDYNFRVKAVNKIGESLP 394
            +  +     L     Y FR+ A  + G    
Sbjct: 75  PSARQYTATGLKPESVYLFRITAQTRKGWGEA 106

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 11/70 (15%), Positives = 21/70 (30%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W+  A   G     ++   +                  +     L   + Y FR+ A  +
Sbjct: 41  WQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTR 100

Query: 109 GGPGEPSDPT 118
            G GE ++  
Sbjct: 101 KGWGEAAEAL 110

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 8/46 (17%), Positives = 14/46 (30%)

Query: 159 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
                         +     L   + Y FR+ A  + G GE ++  
Sbjct: 65  ANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 110

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 11/60 (18%), Positives = 20/60 (33%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
           VPG P      +V    +++ WQ P +  G  +      R   T+     +       + 
Sbjct: 20  VPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQ 79

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 1e-18
 Identities = 30/95 (31%), Positives = 45/95 (47%)

Query: 221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSK 280
               D KVRAG + E    V G    T  W+     I   +  K+ N +  +KL +  ++
Sbjct: 5   QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAAR 64

Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPEG 315
           +   G YTL V+N  G+ +    +TV+D P PP G
Sbjct: 65  QEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 99

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (193), Expect = 2e-18
 Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 398 QSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK 457
            +P T       P  P     +      + L W  P  D       Y +    +    E+
Sbjct: 2   HAPATTGPL---PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARER 58

Query: 458 AC-IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
                       ++ +L     Y FRV+A NK G GE S      T
Sbjct: 59  VENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVET 104

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 1e-15
 Identities = 26/96 (27%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 301 TAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM 360
            A  T   +PS P   +  S ++     L WR P  D   D L Y V        R    
Sbjct: 2   HAPATTGPLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVE 60

Query: 361 GDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLP 394
                   +   +NL+    Y FRV A NK G    
Sbjct: 61  NTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGES 96

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 7e-07
 Identities = 15/70 (21%), Positives = 23/70 (32%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W   A           +   +           +     +  + +L+    Y FRV+A NK
Sbjct: 31  WRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNK 90

Query: 109 GGPGEPSDPT 118
            G GE S P 
Sbjct: 91  HGSGESSAPL 100

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 159 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
                   +     +  + +L+    Y FRV+A NK G GE S P 
Sbjct: 55  ARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPL 100

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 12/60 (20%), Positives = 18/60 (30%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
           +P  P    A+ V    IK+ W+ P S+       Y V   +    R             
Sbjct: 10  LPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQ 69

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 3e-18
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEK-MDMETGRWVPMGDV 363
           T  D P  P  P     I   S  + W  P+D+GG  I  YVVE        +W  +   
Sbjct: 6   TCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSG 65

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
           +      + L  G  Y  RV  ++  G+S        +  + P
Sbjct: 66  ATREHLCDRLNPGCFYRLRVYCISDGGQSAVS---ESLLVQTP 105

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 4e-16
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 410 PDRPGQPT----VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANI 465
           PD+PG P               + W PPK +GG+ I++Y++E        +   I     
Sbjct: 8   PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGAT 67

Query: 466 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
                  L  G  Y  RV  ++ GG    S++    T
Sbjct: 68  REHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT 104

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 1/94 (1%)

Query: 111 PGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD 170
           P +P  P  P +        + +     KD+    + +  +           +   + G 
Sbjct: 8   PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS-GA 66

Query: 171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
           T +     L  G  Y  RV  ++ GG    S+  
Sbjct: 67  TREHLCDRLNPGCFYRLRVYCISDGGQSAVSESL 100

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W+      G T    V+++ EG++    +   + G T +     L  G  Y  RV  ++ 
Sbjct: 32  WDPPKDNGGATINKYVVEMAEGSNGNKWEMIYS-GATREHLCDRLNPGCFYRLRVYCISD 90

Query: 109 GGPGEPSDPT 118
           GG    S+  
Sbjct: 91  GGQSAVSESL 100

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 7e-18
 Identities = 26/94 (27%), Positives = 35/94 (37%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           P P   P            L W  P  DGG+ I  Y VE   +E      +   S     
Sbjct: 2   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT 61

Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITA 403
             +L+ G  Y+FR++A NK+G           TA
Sbjct: 62  VSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA 95

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 1e-17
 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 410 PDRPGQPTVTDW-GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 468
           P     P +        + L W PP  DGGSPIS Y +E  P      +     + +  T
Sbjct: 2   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT 61

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
            V  L  G+ Y FR+ A NK G G  S+     T
Sbjct: 62  -VSSLLPGKTYSFRLRAANKMGFGPFSEKCDITT 94

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 6e-06
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 557 PGKPSKPEATD-VDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
           PG    P          I+++W  P+ +GGS I  Y VE          ++        T
Sbjct: 2   PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECT 61

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 32  PHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVL 91
           P +  R     + LR  W       G       +++         +    +G   +  V 
Sbjct: 8   PRLQGRPKAKEIQLR--WGPPLVDGGSPISCYSVEMSPIEKDEPREV--YQGSEVECTVS 63

Query: 92  DLIEGNQYEFRVLAVNKGGPGEPSDPT 118
            L+ G  Y FR+ A NK G G  S+  
Sbjct: 64  SLLPGKTYSFRLRAANKMGFGPFSEKC 90

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
            E     +G   +  V  L+ G  Y FR+ A NK G G  S+  
Sbjct: 47  DEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKC 90

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 9e-18
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 413 PGQPT--VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSV 470
           PG+PT  ++    +   L+W PPK+  G  +  Y ++                +    +V
Sbjct: 1   PGRPTMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHFTV 59

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
             L +G  Y FR+ A N+ G GE  +      
Sbjct: 60  TGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTP 91

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 1e-12
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGTYT 368
           P  P   +  S    ++  L+W  P++  G ++L Y ++    +  R   +       + 
Sbjct: 1   PGRP--TMMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTIDFGKDDQHF 57

Query: 369 RAENLIEGHDYNFRVKAVNKIGESLP 394
               L +G  Y FR+ A N+ G    
Sbjct: 58  TVTGLHKGTTYIFRLAAKNRAGLGEE 83

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 8e-05
 Identities = 12/48 (25%), Positives = 16/48 (33%)

Query: 158 CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                       D     V  L +G  Y FR+ A N+ G GE  +   
Sbjct: 41  DEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 88

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 9e-05
 Identities = 12/45 (26%), Positives = 16/45 (35%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
                    D     V  L +G  Y FR+ A N+ G GE  +   
Sbjct: 44  RPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEI 88

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
           PG+P+    +    +   ++W  P    G  + GY ++       R   I       
Sbjct: 1   PGRPT-MMISTTAMNTALLQWHPPKELPGE-LLGYRLQYCRADEARPNTIDFGKDDQ 55

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 1e-17
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 3/93 (3%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSV 470
           DRP     TD   D + + W  P+         Y     P+ G  E             +
Sbjct: 3   DRPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTY---SSPEDGIHELFPAPDGEEDTAEL 59

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTC 503
             L+ G EY   V+A++     +P   +     
Sbjct: 60  QGLRPGSEYTVSVVALHDDMESQPLIGTQSTAI 92

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 4e-13
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTY 367
           +I  P    L  +++   S  + W +P+       + Y   +  +      P  D     
Sbjct: 1   NIDRPKG--LAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHE--LFPAPDGEEDT 56

Query: 368 TRAENLIEGHDYNFRVKAVNKIGESLPLV 396
              + L  G +Y   V A++   ES PL+
Sbjct: 57  AELQGLRPGSEYTVSVVALHDDMESQPLI 85

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 7e-07
 Identities = 10/52 (19%), Positives = 20/52 (38%)

Query: 154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                 I E     +G+    ++  L  G++Y   V+A++     +P   T 
Sbjct: 37  SSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQ 88

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
              I E     +G+    ++  L  G++Y   V+A++     +P   T 
Sbjct: 40  EDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQPLIGTQ 88

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (182), Expect = 4e-17
 Identities = 25/95 (26%), Positives = 40/95 (42%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P  P  P +T  G   + L+W+ P          YI+E + +   +           A +
Sbjct: 1   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYT 60

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
           V +L+   +Y+F+VIA N  G   PS+     TC 
Sbjct: 61  VKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCP 95

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 5e-12
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDIL-HYVVEKMDMETGRWVPMGDVSGTYT 368
           PS P  P   +    +  +L+W  P      + + + +  + +     + P  D      
Sbjct: 1   PSMPASP-VLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAY 59

Query: 369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD 405
             +NL     Y F+V A N  G+S P       T  D
Sbjct: 60  TVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPD 96

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 3e-06
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 114 PSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPK 173
           PS P +P + +A       L  +    +  ++     L  +        K      D   
Sbjct: 1   PSMPASPVLTKAGITWL-SLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL-A 58

Query: 174 GKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
             V +L    +Y+F+V+A N  G   PS+  
Sbjct: 59  YTVKNLRRSTKYKFKVIAYNSEGKSNPSEVV 89

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W K + T  D     +L++ E       K      D     V +L    +Y+F+V+A N 
Sbjct: 21  WSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL-AYTVKNLRRSTKYKFKVIAYNS 79

Query: 109 GGPGEPSDPT 118
            G   PS+  
Sbjct: 80  EGKSNPSEVV 89

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 14/57 (24%), Positives = 20/57 (35%)

Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRT 613
           P  P+ P  T      + ++W +P          Y +E  E TSG   K   D    
Sbjct: 1   PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL 57

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.0 bits (181), Expect = 8e-17
 Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 401 ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI 460
           +  +     P               + + W  P    G  I  Y +    K    E    
Sbjct: 2   VETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKE--QD 58

Query: 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
           V  +  + ++  LK+  EY FRV+A NK GPG     +  V  +
Sbjct: 59  VDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVS---TPDVAVR 99

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (171), Expect = 2e-15
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 303 KVTV---LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP 359
           +V     + +P P    L+    + +S  + W  P    G +I +Y +  M+  T +   
Sbjct: 1   RVETQPEVQLPGPAPN-LRAYAASPTSITVTWETPVSGNG-EIQNYKLYYMEKGTDKEQD 58

Query: 360 MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
           +   S +YT    L +  +Y+FRV A NK G  + 
Sbjct: 59  VDVSSHSYTI-NGLKKYTEYSFRVVAYNKHGPGVS 92

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 555 NVPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKI 606
            +PG      A       I + W+ P+S  G  I+ Y++   E+ + +   +
Sbjct: 9   QLPGPAPNLRAYAASPTSITVTWETPVSGNGE-IQNYKLYYMEKGTDKEQDV 59

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 92  DLIEGNQYEFRVLAVNKGGPGEPSDPT 118
            L +  +Y FRV+A NK GPG  +   
Sbjct: 70  GLKKYTEYSFRVVAYNKHGPGVSTPDV 96

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 178 DLIEGNQYEFRVLAVNKGGPGEPSDPT 204
            L +  +Y FRV+A NK GPG  +   
Sbjct: 70  GLKKYTEYSFRVVAYNKHGPGVSTPDV 96

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 73.9 bits (180), Expect = 1e-16
 Identities = 27/106 (25%), Positives = 37/106 (34%), Gaps = 14/106 (13%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-------------PWEKAC 459
           P  P VT    + V L W  P+ DG  PI  + ++ +                    K  
Sbjct: 3   PTPPNVTRLSDESVMLRWMVPRNDG-LPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 61

Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
                    SV DLK    Y FR++AV      + S  SA    +P
Sbjct: 62  SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQP 107

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.0 bits (123), Expect = 5e-09
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 17/105 (16%)

Query: 313 PEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM------------ 360
           P  P   + ++  S  L W  PR+DG   ++  V  +M  +   W               
Sbjct: 2   PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWN 61

Query: 361 -GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
                       +L   H Y FR+ AV    ++      S  +AK
Sbjct: 62  SELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKE----SNTSAK 102

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 16/78 (20%), Positives = 25/78 (32%)

Query: 47  PIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV 106
           PI     Q      +       +       K     G +    V DL   + Y FR+LAV
Sbjct: 29  PIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAV 88

Query: 107 NKGGPGEPSDPTAPHIAR 124
                 + S+ +A    +
Sbjct: 89  YSNNDNKESNTSAKFYLQ 106

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
             ++     K     G +    V DL   + Y FR+LAV      + S+ +A    +
Sbjct: 50  NDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 106

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 2e-16
 Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 2/102 (1%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIVPANITAT 468
            D PG+P   +  +  V L+W  P+  GG  I+ YI+EK+    G W KA          
Sbjct: 3   IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 62

Query: 469 SVPDLKEGEEYEFRVIAVNKGGP-GEPSKASAPVTCKPRFVA 509
           +V  L E   YEFRVIA N  G    PS+ S  +TC+    A
Sbjct: 63  TVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 104

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 2e-14
 Identities = 35/101 (34%), Positives = 43/101 (42%), Gaps = 3/101 (2%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW--VPMGDVSGTY 367
           P  P G   P NIT+ +  L+W  P   GG  I  Y+VEK D+  GRW      ++    
Sbjct: 2   PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 61

Query: 368 TRAENLIEGHDYNFRVKAVNKIGE-SLPLVCQSPITAKDPF 407
                L E   Y FRV A N  G  S P      IT +D  
Sbjct: 62  FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDV 102

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGP-GEPSDPTAPHIAR 124
           +  +  W K   +     +  V  L E   YEFRV+A N  G    PS+P+     R
Sbjct: 43  DLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 99

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 2/98 (2%)

Query: 114 PSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPK 173
              P  P      +     L     + +   ++    +  +      W K   +     +
Sbjct: 3   IDPPGKPVPLNITRHTV-TLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENE 61

Query: 174 GKVLDLIEGNQYEFRVLAVNKGGP-GEPSDPTAPHIAR 210
             V  L E   YEFRV+A N  G    PS+P+     R
Sbjct: 62  FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 99

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (176), Expect = 3e-16
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 409 RPDRPGQPTVTDWGK--DHVDLEWTP-PKKDGGSPISQYIIEKKPKYGPWEKACIVPANI 465
           +PD P   TVT   +    + + W      +      ++ +  + +        +V    
Sbjct: 1   QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ 60

Query: 466 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
               + D   G  +  ++ A  + G GE S+ S      P 
Sbjct: 61  HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPW 101

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 8/99 (8%), Positives = 26/99 (26%), Gaps = 5/99 (5%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWR---APRDDGGTDILHYVVEKMDMETGRWVPMGDVSG- 365
           P PP   +  + + ++   L          +     L + +      +  +         
Sbjct: 2   PDPPAN-ITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ 60

Query: 366 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
            +    +   G  +  +++A  + G+             
Sbjct: 61  HHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGT 99

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 11/85 (12%), Positives = 24/85 (28%)

Query: 39  GGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQ 98
             NP  L   W+          + +                  +       + D   G +
Sbjct: 14  ARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLR 73

Query: 99  YEFRVLAVNKGGPGEPSDPTAPHIA 123
           +  ++ A  + G GE S+ +   + 
Sbjct: 74  HVVQLRAQEEFGQGEWSEWSPEAMG 98

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 11/103 (10%)

Query: 113 EPSDPTAPHIARAKKGKCYHLVGTLLKD------SIYEQLKRSGLFDQFHLCPIWEKCAQ 166
           +P  P    +    +   +  V                   R              K  Q
Sbjct: 1   QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ 60

Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 209
                    + D   G ++  ++ A  + G GE S+ +   + 
Sbjct: 61  HHC-----VIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMG 98

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 4e-16
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 401 ITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI 460
           I      G P +P         +  + L WTPP+ D    I+ Y +  K      E+   
Sbjct: 2   IQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSD---TIANYELVYKDGEHGEEQRIT 58

Query: 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           +    +   +  LK    Y FR+ A +  G G  +   +  T
Sbjct: 59  IEPGTSYR-LQGLKPNSLYYFRLAARSPQGLGASTAEISART 99

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 2e-15
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
           +T   +P  P    K    +++S  L W  PR D    I +Y +   D E G    +   
Sbjct: 5   ITQTGVPGQPLN-FKAEPESETSILLSWTPPRSDT---IANYELVYKDGEHGEEQRITIE 60

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
            GT  R + L     Y FR+ A +  G    
Sbjct: 61  PGTSYRLQGLKPNSLYYFRLAARSPQGLGAS 91

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
            E+   T       ++  L   + Y FR+ A +  G G  +   
Sbjct: 52  GEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 95

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
            E+   T       ++  L   + Y FR+ A +  G G  +   
Sbjct: 52  GEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 95

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDP 610
           VPG+P   +A    +  I + W  P S+    I  YE+  ++   G   +IT +P
Sbjct: 10  VPGQPLNFKAEPESETSILLSWTPPRSDT---IANYELVYKDGEHGEEQRITIEP 61

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.1 bits (173), Expect = 1e-15
 Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 1/102 (0%)

Query: 405 DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWE-KACIVPA 463
           +P         P V       + L W P K          +  +    G        +P+
Sbjct: 3   EPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPS 62

Query: 464 NITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
           +     +  L +   Y  ++  +    PG  S  S  +  +P
Sbjct: 63  SKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRP 104

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 9/102 (8%), Positives = 30/102 (29%), Gaps = 4/102 (3%)

Query: 307 LDIPSPPEGPLKP--SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVS 364
           L+ P      + P   +       L W+  +     +    +  +  ++   W  +  + 
Sbjct: 2   LEPPMLQALDIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLP 61

Query: 365 GTYTRAE--NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
            +  + E   L +   Y  +++ +              +  +
Sbjct: 62  SSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 103

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 1/100 (1%)

Query: 111 PGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD 170
           P   +    P +   + G C  L     K S Y + +    +        W         
Sbjct: 5   PMLQALDIGPDVVSHQPG-CLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSS 63

Query: 171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
             + ++  L +   Y  ++  +    PG  S  +     R
Sbjct: 64  KDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLR 103

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 4e-04
 Identities = 11/84 (13%), Positives = 25/84 (29%)

Query: 41  NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYE 100
            P  L   W+    +E    + ++    +     W           + ++  L +   Y 
Sbjct: 20  QPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYT 79

Query: 101 FRVLAVNKGGPGEPSDPTAPHIAR 124
            ++  +    PG  S  +     R
Sbjct: 80  LQMRCIRSSLPGFWSPWSPGLQLR 103

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.9 bits (170), Expect = 2e-15
 Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 1/89 (1%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSV 470
           D P    V       +DLEW   + +       Y      +Y             T T++
Sbjct: 2   DAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVP-KGIGPTTKTTL 60

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
            DL  G EY   + AV       P+  +A
Sbjct: 61  TDLVPGTEYGVGISAVMNSKQSIPATMNA 89

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.4 bits (161), Expect = 3e-14
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
             P+  L+  + T +S +LEW     +     + Y     +      VP G    T T  
Sbjct: 2   DAPKN-LRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTL 60

Query: 371 ENLIEGHDYNFRVKAVNKIGESLPLV 396
            +L+ G +Y   + AV    +S+P  
Sbjct: 61  TDLVPGTEYGVGISAVMNSKQSIPAT 86

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 11/49 (22%), Positives = 17/49 (34%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
                    +  G T K  + DL+ G +Y   + AV       P+   A
Sbjct: 41  EQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNA 89

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 11/48 (22%), Positives = 17/48 (35%)

Query: 158 CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                   +  G T K  + DL+ G +Y   + AV       P+   A
Sbjct: 42  QYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNA 89

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 4e-15
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-GPWEKACIVPANITATS 469
           D P          + + + W PP+      I+ YII+ +     P E        +T  +
Sbjct: 2   DAPSNLRFLATTPNSLLVSWQPPRA----RITGYIIKYEKPGSPPREVVPRPRPGVTEAT 57

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           +  L+ G EY   VIA+      EP     
Sbjct: 58  ITGLEPGTEYTIYVIALKNNQKSEPLIGRK 87

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 3e-12
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT 366
           +D PS     L+    T +S  + W+ PR      I  Y+++     +     +      
Sbjct: 1   IDAPSN----LRFLATTPNSLLVSWQPPRAR----ITGYIIKYEKPGSPPREVVPRPRPG 52

Query: 367 YTRA--ENLIEGHDYNFRVKAVNKIGESLPLV 396
            T A    L  G +Y   V A+    +S PL+
Sbjct: 53  VTEATITGLEPGTEYTIYVIALKNNQKSEPLI 84

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 9/43 (20%), Positives = 15/43 (34%)

Query: 158 CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 200
            P  E   +      +  +  L  G +Y   V+A+      EP
Sbjct: 40  SPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP 82

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 10/53 (18%), Positives = 19/53 (35%)

Query: 62  GKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 114
           G ++   +   P  E   +      +  +  L  G +Y   V+A+      EP
Sbjct: 30  GYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEP 82

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 4/56 (7%)

Query: 560 PSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPDPIRTKT 615
           PS         + + + WQ P +     I GY ++  +  S     +         
Sbjct: 4   PSNLRFLATTPNSLLVSWQPPRAR----ITGYIIKYEKPGSPPREVVPRPRPGVTE 55

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 4e-15
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATS 469
           D P     +D   +   + W  P+    + I+ Y I   P++     +   VP +  + +
Sbjct: 2   DSPTGIDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSIT 57

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           + +L  G EY   ++A+N            
Sbjct: 58  LTNLTPGTEYVVSIVALNGREESPLLIGQQ 87

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 4e-13
 Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 7/90 (7%)

Query: 311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
             P G +  S+IT +S  + W APR      I  Y +               V  +    
Sbjct: 2   DSPTG-IDFSDITANSFTVHWIAPRAT----ITGYRIRHHPEHFSGRPREDRVPHSRNSI 56

Query: 371 --ENLIEGHDYNFRVKAVNKIGESLPLVCQ 398
              NL  G +Y   + A+N   ES  L+ Q
Sbjct: 57  TLTNLTPGTEYVVSIVALNGREESPLLIGQ 86

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 6/53 (11%), Positives = 16/53 (30%)

Query: 62  GKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 114
           G  +     +     +  +         + +L  G +Y   ++A+N       
Sbjct: 30  GYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL 82

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 3e-05
 Identities = 5/42 (11%), Positives = 13/42 (30%)

Query: 159 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 200
               +  +         + +L  G +Y   ++A+N       
Sbjct: 41  SGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPL 82

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (166), Expect = 5e-15
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
           P +  VTD  +  + + W          I+ + ++  P  G       +  ++ + ++  
Sbjct: 5   PRRARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRTIKPDVRSYTITG 60

Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASA 499
           L+ G +Y+  +  +N      P    A
Sbjct: 61  LQPGTDYKIYLYTLNDNARSSPVVIDA 87

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 6e-11
 Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
           SPP    + ++ T+++  + WR   +      +                           
Sbjct: 3   SPPRR-ARVTDATETTITISWRTKTETITGFQVDA---VPANGQTPIQRTIKPDVRSYTI 58

Query: 371 ENLIEGHDYNFRVKAVNKIGESLPLV 396
             L  G DY   +  +N    S P+V
Sbjct: 59  TGLQPGTDYKIYLYTLNDNARSSPVV 84

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 7/45 (15%), Positives = 12/45 (26%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
                  + D     +  L  G  Y+  +  +N      P    A
Sbjct: 43  TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDA 87

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 7/45 (15%), Positives = 12/45 (26%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                  + D     +  L  G  Y+  +  +N      P    A
Sbjct: 43  TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDA 87

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.3 bits (166), Expect = 6e-15
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSV 470
           D P    V+D  +  + L W  P          Y     P     E     P + T+  +
Sbjct: 1   DNPKDLEVSDPTETTLSLRWRRPVAKFDRYRLTY---VSPSGKKNEMEI--PVDSTSFIL 55

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
             L  G EY   ++A       +P+    
Sbjct: 56  RGLDAGTEYTISLVAEKGRHKSKPTTIKG 84

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.5 bits (143), Expect = 6e-12
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 5/85 (5%)

Query: 312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAE 371
            P+  L+ S+ T+++ +L WR P        L YV                V  T     
Sbjct: 2   NPKD-LEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSGKK----NEMEIPVDSTSFILR 56

Query: 372 NLIEGHDYNFRVKAVNKIGESLPLV 396
            L  G +Y   + A     +S P  
Sbjct: 57  GLDAGTEYTISLVAEKGRHKSKPTT 81

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 4/82 (4%)

Query: 42  PLNLR--PIWEKCAQTEGDTPKGKVLDLIEGNHP--IWEKCAQTEGDTPKGKVLDLIEGN 97
           P +L      E         P  K              +   +   D+    +  L  G 
Sbjct: 3   PKDLEVSDPTETTLSLRWRRPVAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGT 62

Query: 98  QYEFRVLAVNKGGPGEPSDPTA 119
           +Y   ++A       +P+    
Sbjct: 63  EYTISLVAEKGRHKSKPTTIKG 84

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.2 bits (93), Expect = 4e-05
 Identities = 6/45 (13%), Positives = 15/45 (33%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
            +   +   D+    +  L  G +Y   ++A       +P+    
Sbjct: 40  KKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKG 84

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 8e-15
 Identities = 28/117 (23%), Positives = 38/117 (32%), Gaps = 6/117 (5%)

Query: 305 TVLDIPSPPEGPLKPSNITKSSCNLEWRA-PRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
           T+ D+PS     L        S  + W+          I  Y +          V    V
Sbjct: 6   TLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLV 65

Query: 364 SGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTV 418
           SGT      E L  G +YNFRV A+   G          ++A+      D    P V
Sbjct: 66  SGTQLSQLIEGLDRGTEYNFRVAALTINGTGPA---TDWLSAETFESDLDETRVPEV 119

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 3e-12
 Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 3/105 (2%)

Query: 401 ITAKDPFGRPDR-PGQPTVTDWGKDHVDLEWTP-PKKDGGSPISQYIIEKKPKY-GPWEK 457
           +  +     P   P   ++       + + W P         I+ Y I  +         
Sbjct: 2   VAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVT 61

Query: 458 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
             +V     +  +  L  G EY FRV A+   G G  +   +  T
Sbjct: 62  ETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAET 106

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 6e-06
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 49  WEKCAQTEGDTP-KGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN 107
           W+  A    +    G  +   + +           G      +  L  G +Y FRV A+ 
Sbjct: 32  WQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALT 91

Query: 108 KGGPGEPSDPT 118
             G G  +D  
Sbjct: 92  INGTGPATDWL 102

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 11/51 (21%), Positives = 16/51 (31%)

Query: 154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
           +              G      +  L  G +Y FRV A+   G G  +D  
Sbjct: 52  RKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWL 102

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.0 bits (165), Expect = 9e-15
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
           P   + +D  ++   + WTPP+      +  Y +   P  G       V  + T T +  
Sbjct: 4   PKGISFSDITENSATVSWTPPRS----RVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVK 59

Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASA 499
           L  G +Y   +I+V      EP     
Sbjct: 60  LVPGVDYNVNIISVKGFEESEPISGIL 86

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.3 bits (145), Expect = 4e-12
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAE 371
            P+G +  S+IT++S  + W  PR    +  + YV           V       T T+  
Sbjct: 3   SPKG-ISFSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSK---TRTKLV 58

Query: 372 NLIEGHDYNFRVKAVNKIGESLPLV 396
            L+ G DYN  + +V    ES P+ 
Sbjct: 59  KLVPGVDYNVNIISVKGFEESEPIS 83

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 114
                  +G   + K++ L+ G  Y   +++V      EP
Sbjct: 42  TPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEP 81

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.5 bits (91), Expect = 8e-05
 Identities = 8/40 (20%), Positives = 16/40 (40%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP 200
                  +G   + K++ L+ G  Y   +++V      EP
Sbjct: 42  TPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEP 81

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (166), Expect = 9e-15
 Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 1/102 (0%)

Query: 405 DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK-KPKYGPWEKACIVPA 463
           +P         P         + L W P +          +  K +     W     +P 
Sbjct: 2   EPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPL 61

Query: 464 NITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
                 +  L     Y  ++  +    PG  S  S  +  + 
Sbjct: 62  EALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRT 103

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 9/102 (8%), Positives = 23/102 (22%), Gaps = 4/102 (3%)

Query: 307 LDIPSPPEGPLKP--SNITKSSCNLEWRAPRDDGGTDILHYVVEKMD--METGRWVPMGD 362
           L+ P        P  +        L W   +     +    +  K      +   V    
Sbjct: 1   LEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLP 60

Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
           +         L+    Y  +++ +              +  +
Sbjct: 61  LEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 102

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 6e-04
 Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 1/100 (1%)

Query: 111 PGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD 170
           P   +   +P  A  + G C  L     +  ++   K             W        +
Sbjct: 4   PMLRTMDPSPEAAPPQAG-CLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLE 62

Query: 171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
             + ++  L+    Y  ++  +    PG  SD +     R
Sbjct: 63  ALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELR 102

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 11/76 (14%), Positives = 23/76 (30%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           WE          K ++    +     W        +  + ++  L+    Y  ++  +  
Sbjct: 27  WEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRW 86

Query: 109 GGPGEPSDPTAPHIAR 124
             PG  SD +     R
Sbjct: 87  PLPGHWSDWSPSLELR 102

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 1e-14
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 417 TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP-WEKACIVPANITATSVPDLKE 475
            V       + + W  P       +  Y I      G    +   VP + +  ++  LK 
Sbjct: 4   EVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKP 59

Query: 476 GEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
           G +Y   V AV   G    S  S P++   R
Sbjct: 60  GVDYTITVYAVTGRGDSPAS--SKPISINYR 88

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 1e-11
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 317 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA--ENLI 374
           L+    T +S  + W AP       + +Y +   +      V    V G+ + A    L 
Sbjct: 3   LEVVAATPTSLLISWDAPAVT----VRYYRITYGETGGNSPVQEFTVPGSKSTATISGLK 58

Query: 375 EGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
            G DY   V AV   G+S        I  +
Sbjct: 59  PGVDYTITVYAVTGRGDSPASSKPISINYR 88

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 10/50 (20%), Positives = 12/50 (24%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
             +     G      +  L  G  Y   V AV   G    S        R
Sbjct: 39  PVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 88

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 10/50 (20%), Positives = 12/50 (24%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
             +     G      +  L  G  Y   V AV   G    S        R
Sbjct: 39  PVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYR 88

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 2e-14
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 3/91 (3%)

Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 468
           R D P Q  V D       + W  P  +       Y                +  +    
Sbjct: 1   RLDAPSQIEVKDVTDTTALITWFKPLAEIDGIELTY---GIKDVPGDRTTIDLTEDENQY 57

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           S+ +LK   EYE  +I+        P+K + 
Sbjct: 58  SIGNLKPDTEYEVSLISRRGDMSSNPAKETF 88

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 7e-10
 Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 3/87 (3%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
              P   ++  ++T ++  + W  P  +     L Y ++ +  +                
Sbjct: 2   LDAPSQ-IEVKDVTDTTALITWFKPLAEIDGIELTYGIKDVPGDR--TTIDLTEDENQYS 58

Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLV 396
             NL    +Y   + +      S P  
Sbjct: 59  IGNLKPDTEYEVSLISRRGDMSSNPAK 85

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 7/49 (14%), Positives = 16/49 (32%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
           + P          D  +  + +L    +YE  +++        P+  T 
Sbjct: 40  DVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETF 88

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 7/52 (13%), Positives = 15/52 (28%)

Query: 154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                P          D  +  + +L    +YE  +++        P+  T 
Sbjct: 37  GIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETF 88

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 2e-14
 Identities = 29/108 (26%), Positives = 40/108 (37%), Gaps = 1/108 (0%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA 458
           S  T    +  P+ P    +TD     V L WTP   +        I  +   + P    
Sbjct: 6   SGPTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWH 65

Query: 459 CIVPANITATS-VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
                + T T+   +L     Y FRV+AVN  G   PS+AS     K 
Sbjct: 66  HQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 6e-12
 Identities = 31/118 (26%), Positives = 42/118 (35%), Gaps = 5/118 (4%)

Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDG--GTDILHYVVEKMDMETGRW 357
           G     V D+P+PP   L+ ++    S  L W    D+    T  +    + M       
Sbjct: 7   GPTPAPVYDVPNPPFD-LELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWH 65

Query: 358 VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKD--PFGRPDRP 413
                     T   NL    +Y+FRV AVN IG+SLP         K   P   P   
Sbjct: 66  HQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTSG 123

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 23/56 (41%)

Query: 70  GNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 125
            + P           T     L+L     Y FRV+AVN  G   PS+ +  ++ +A
Sbjct: 58  MHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 158 CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 211
            P           T     L+L     Y FRV+AVN  G   PS+ +  ++ +A
Sbjct: 60  KPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKA 113

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 3e-14
 Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 16/137 (11%)

Query: 293 NSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDM 352
            S G ++  A   +L     P      S+I   +  L W  P      +     V ++  
Sbjct: 4   GSSGDEETKAFEALLSNIVKPV----ASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59

Query: 353 ---------ETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITA 403
                    + G++  +     T     +L    DY+ +V+A     +  P         
Sbjct: 60  YEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTP---SEAEIF 116

Query: 404 KDPFGRPDRPGQPTVTD 420
                 PD P  P ++ 
Sbjct: 117 TTLSCEPDIPNPPRISG 133

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 3e-14
 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 8/109 (7%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY--------GPWEKACIV 461
                +P  +D     V L W+PP         +  + +   Y           +   + 
Sbjct: 18  LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVY 77

Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
               T  ++ DLK   +Y  +V A      G PS+A    T       P
Sbjct: 78  VGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIP 126

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 5e-05
 Identities = 8/48 (16%), Positives = 13/48 (27%)

Query: 556 VPGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRW 603
           +     KP A+D+    + + W  P S          V          
Sbjct: 17  LLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLI 64

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 10/50 (20%), Positives = 15/50 (30%)

Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
             G+     + DL     Y  +V A      G PS+         +   P
Sbjct: 77  YVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIP 126

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 9/38 (23%), Positives = 13/38 (34%)

Query: 81  TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
             G+     + DL     Y  +V A      G PS+  
Sbjct: 77  YVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAE 114

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.1 bits (160), Expect = 3e-14
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSV 470
           D P    VT   +  + L WT        PI  Y I   P  G   +   VP + T+ ++
Sbjct: 2   DSPRDLMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEVT-VPRDRTSYTL 56

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
            DL+ G EY   + A         S   A
Sbjct: 57  TDLEPGAEYIISITAERGRQQSLESTVDA 85

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 5/84 (5%)

Query: 311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
             P   L  +  +++S +L W           + +                    T    
Sbjct: 2   DSPRD-LMVTASSETSISLIWTKASGPIDHYRITFTPSSGIS----SEVTVPRDRTSYTL 56

Query: 371 ENLIEGHDYNFRVKAVNKIGESLP 394
            +L  G +Y   + A     +SL 
Sbjct: 57  TDLEPGAEYIISITAERGRQQSLE 80

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 13/82 (15%), Positives = 18/82 (21%), Gaps = 4/82 (4%)

Query: 42  PLNLR--PIWEKCAQTEGDTPKGKVLDLIEGNHP--IWEKCAQTEGDTPKGKVLDLIEGN 97
           P +L      E           G +        P            D     + DL  G 
Sbjct: 4   PRDLMVTASSETSISLIWTKASGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGA 63

Query: 98  QYEFRVLAVNKGGPGEPSDPTA 119
           +Y   + A         S   A
Sbjct: 64  EYIISITAERGRQQSLESTVDA 85

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 8/45 (17%), Positives = 11/45 (24%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                    D     + DL  G +Y   + A         S   A
Sbjct: 41  ISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLESTVDA 85

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 5e-14
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-----GPWEKACIVP 462
           G   R  Q +VTD     + L W  P     S + ++ +              ++  +VP
Sbjct: 2   GSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVP 61

Query: 463 ANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
               +  + DL+ G  Y   +  +      +  + +A
Sbjct: 62  GTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 98

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 1e-10
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 6/90 (6%)

Query: 312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP------MGDVSG 365
           P    L  +++T SS  L W AP     + +L + V           P      M   + 
Sbjct: 5   PRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTR 64

Query: 366 TYTRAENLIEGHDYNFRVKAVNKIGESLPL 395
                 +L  G  Y+  +  +    ++  +
Sbjct: 65  HSAVLRDLRSGTLYSLTLYGLRGPHKADSI 94

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 12/97 (12%), Positives = 25/97 (25%)

Query: 109 GGPGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTE 168
           G     S  +   +  +     +          +      S    + H  P+ ++     
Sbjct: 2   GSRPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVP 61

Query: 169 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
           G      + DL  G  Y   +  +      +    TA
Sbjct: 62  GTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 98

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 8/49 (16%), Positives = 15/49 (30%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
             P+ ++     G      + DL  G  Y   +  +      +    TA
Sbjct: 50  PRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTA 98

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (160), Expect = 5e-14
 Identities = 18/99 (18%), Positives = 25/99 (25%), Gaps = 5/99 (5%)

Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWE-----KACIVPA 463
           +P  PG  TV     D + L W+ P        +                          
Sbjct: 1   KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 60

Query: 464 NITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
                +   LK G  Y  RV A  +      S+ S    
Sbjct: 61  PSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTK 99

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 10/96 (10%), Positives = 20/96 (20%)

Query: 111 PGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD 170
           P  P + T            +                   ++ +                
Sbjct: 2   PRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEP 61

Query: 171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
           + +     L  G  Y  RV A  +      S+ +  
Sbjct: 62  SLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPS 97

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 5e-06
 Identities = 14/91 (15%), Positives = 20/91 (21%), Gaps = 7/91 (7%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEK------MDMETGRWVPMGDV 363
           P  P   L        +  L W  P         H              +   +      
Sbjct: 2   PRAPGN-LTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 60

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
                 A  L  G  Y  RV+A  +   +  
Sbjct: 61  PSLRIAASTLKSGISYRARVRAWAQAYNTTW 91

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-05
 Identities = 7/50 (14%), Positives = 12/50 (24%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
                         + +     L  G  Y  RV A  +      S+ +  
Sbjct: 48  PADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPS 97

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 1e-13
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 3/87 (3%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
           P     T      +  +WTPP         +   ++        K   +  + ++  V  
Sbjct: 3   PTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKE---KTGPMKEINLAPDSSSVVVSG 59

Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASA 499
           L    +YE  V A+       P++   
Sbjct: 60  LMVATKYEVSVYALKDTLTSRPAQGVV 86

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 9e-11
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 2/84 (2%)

Query: 312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAE 371
           P    LK + +T +S + +W  P        +    ++                +     
Sbjct: 1   PAPTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPM--KEINLAPDSSSVVVS 58

Query: 372 NLIEGHDYNFRVKAVNKIGESLPL 395
            L+    Y   V A+     S P 
Sbjct: 59  GLMVATKYEVSVYALKDTLTSRPA 82

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 6e-05
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 158 CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                K      D+    V  L+   +YE  V A+       P+    
Sbjct: 39  KTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVV 86

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 6e-05
 Identities = 9/51 (17%), Positives = 14/51 (27%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
                   K      D+    V  L+   +YE  V A+       P+    
Sbjct: 36  PKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVV 86

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 1e-13
 Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 9/101 (8%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKD-GGSPISQYIIEKKPKYGP-----WEKACIVPA 463
              P   T+       + + W  PKK+     I  Y I  +                   
Sbjct: 9   DGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATG 68

Query: 464 NITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
           +    ++ +LK+  +Y   V A N+ G G     S+ +   
Sbjct: 69  DSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS---SSEINAT 106

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 2e-11
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 10/104 (9%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVVEKMDMETGRW------VPM 360
             P  P   +    +T  S  + W+AP ++     I  Y +   +   G           
Sbjct: 6   AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 65

Query: 361 GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
                     +NL +   Y   V+A N+ G        S I A 
Sbjct: 66  ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPS---SSEINAT 106

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 4e-05
 Identities = 11/47 (23%), Positives = 17/47 (36%)

Query: 158 CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
                   +  GD+    + +L +  QY   V A N+ G G  S   
Sbjct: 57  GQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 103

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 12/50 (24%), Positives = 18/50 (36%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
             N        +  GD+    + +L +  QY   V A N+ G G  S   
Sbjct: 54  GSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 103

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 1e-13
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 5/101 (4%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIE-----KKPKYGPWEKACIVPAN 464
           P  PG+            L W  P +  G   +  +            GP +K  +    
Sbjct: 3   PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPK 62

Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
                + +L+E + Y + V A N  G G   +A   +  +P
Sbjct: 63  NRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQP 103

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYV------VEKMDMETGRWVPMG 361
           ++PS P G L  + ++ +   L W  P +  G    + V       +   +   + V + 
Sbjct: 1   EVPSEP-GRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD 59

Query: 362 DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
           +        ENL E   Y + VKA N  G          +  +
Sbjct: 60  NPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQ 102

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 13/94 (13%), Positives = 25/94 (26%)

Query: 111 PGEPSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGD 170
           P EP       ++       +        +    ++    + D        +K       
Sbjct: 3   PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPK 62

Query: 171 TPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
                + +L E   Y + V A N  G G   +  
Sbjct: 63  NRMLLIENLRESQPYRYTVKARNGAGWGPEREAI 96

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
                +K            + +L E   Y + V A N  G G   +  
Sbjct: 49  PIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAI 96

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 2e-13
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 6/101 (5%)

Query: 409 RPDRPGQPTVT--DWGKDHVDLEWTPPK--KDGGSPISQYIIEKKPKYGPWEKACIVPAN 464
           +PD P              +++ W  P    D  S   ++ +  +P      +  +  +N
Sbjct: 7   KPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQ-HVELSN 65

Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
            TA ++ D   G+EY  +V A +    G  S  S      P
Sbjct: 66  GTAHTITDAYAGKEYIIQVAAKDNEI-GTWSDWSVAAHATP 105

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 5e-10
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 6/103 (5%)

Query: 307 LDI--PSPPEGP-LKPSNITKSSCNLEWRAPR--DDGGTDILHYVVEKMDMETGRWVPMG 361
           L    P PPE    +P         + W+ P    D  +  L + +    +   +W  + 
Sbjct: 3   LGSVKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVE 62

Query: 362 DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
             +GT     +   G +Y  +V A +               A 
Sbjct: 63  LSNGTAHTITDAYAGKEYIIQVAAKDN-EIGTWSDWSVAAHAT 104

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 3e-13
 Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 2/93 (2%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT-SVP 471
           P   T+  +  + + + W           +  +     K   W  ACI  ++     S  
Sbjct: 4   PTNVTIESYNMNPI-VYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDH 62

Query: 472 DLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
                     RV A         +K+     C+
Sbjct: 63  VGDPSNSLWVRVKARVGQKESAYAKSEEFAVCR 95

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 1e-11
 Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 6/95 (6%)

Query: 318 KPSNITKSSCN----LEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR--AE 371
            P+N+T  S N    + W              V       +       ++S  Y      
Sbjct: 3   TPTNVTIESYNMNPIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDH 62

Query: 372 NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
                +    RVKA     ES     +     +D 
Sbjct: 63  VGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDG 97

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 11/79 (13%), Positives = 17/79 (21%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           WE     +      +V +    N    + C                  N    RV A   
Sbjct: 20  WEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVG 79

Query: 109 GGPGEPSDPTAPHIARAKK 127
                 +      + R  K
Sbjct: 80  QKESAYAKSEEFAVCRDGK 98

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 7/53 (13%), Positives = 10/53 (18%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKK 213
            + C                  N    RV A         +      + R  K
Sbjct: 46  IDACINISHHYCNISDHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDGK 98

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 3e-13
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
           P  P     G   +   W PP          Y ++   +     +A ++ + + +  + +
Sbjct: 5   PQNPNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTN 60

Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
           L    +YE +V A    G G     S+ V+C+
Sbjct: 61  LYPYCDYEMKVCAYGAQGEGPY---SSLVSCR 89

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (118), Expect = 2e-08
 Identities = 13/84 (15%), Positives = 20/84 (23%), Gaps = 4/84 (4%)

Query: 311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
             P+ P           +  W  P        + Y ++         +            
Sbjct: 3   GAPQNP-NAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLD---SKVPSVEL 58

Query: 371 ENLIEGHDYNFRVKAVNKIGESLP 394
            NL    DY  +V A    GE   
Sbjct: 59  TNLYPYCDYEMKVCAYGAQGEGPY 82

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 9/46 (19%), Positives = 15/46 (32%)

Query: 158 CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 203
                +    +   P  ++ +L     YE +V A    G G  S  
Sbjct: 40  GDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSL 85

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-05
 Identities = 9/47 (19%), Positives = 15/47 (31%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 117
                 +    +   P  ++ +L     YE +V A    G G  S  
Sbjct: 39  QGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSL 85

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 63.9 bits (154), Expect = 3e-13
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITAT 468
            P+ P    +T    D  ++ W     +  SPI  Y I+    + P              
Sbjct: 5   VPNAPKLTGITC-QADKAEIHWEQQGDNR-SPILHYTIQFNTSFTPASWDAAYEKVPNTD 62

Query: 469 S--VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           S  V  +     Y FRVIA NK G   PS  S   T
Sbjct: 63  SSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCT 98

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 55.4 bits (132), Expect = 3e-10
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW---VPMGD 362
           V D+P+ P+              + W    D+  + ILHY ++     T           
Sbjct: 2   VQDVPNAPKLTG--ITCQADKAEIHWEQQGDNR-SPILHYTIQFNTSFTPASWDAAYEKV 58

Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAK 404
            +   +    +    +Y FRV A NKIG S P       T +
Sbjct: 59  PNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 45.8 bits (107), Expect = 7e-07
 Identities = 13/61 (21%), Positives = 22/61 (36%)

Query: 64  VLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIA 123
           +          W+   +   +T    V+ +     Y FRV+A NK G   PS  +     
Sbjct: 40  IQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTT 99

Query: 124 R 124
           +
Sbjct: 100 Q 100

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 158 CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 210
              W+   +   +T    V+ +     Y FRV+A NK G   PS  +     +
Sbjct: 48  PASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 3e-13
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK-YGPWEKACIVPANITATSVP 471
           P     T+ G D + + W PP       ++ +++   P           +  +  A  + 
Sbjct: 4   PTDLRFTNIGPDTMRVTWAPPPS---IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 60

Query: 472 DLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           +L  G EY   V +V +     P +   
Sbjct: 61  NLLPGTEYVVSVSSVYEQHESTPLRGRQ 88

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAE 371
           PP   L+ +NI   +  + W  P     T+ L         E          S       
Sbjct: 2   PPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPV-KNEEDVAELSISPSDNAVVLT 60

Query: 372 NLIEGHDYNFRVKAVNKIGESLPLV 396
           NL+ G +Y   V +V +  ES PL 
Sbjct: 61  NLLPGTEYVVSVSSVYEQHESTPLR 85

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 7/71 (9%), Positives = 17/71 (23%), Gaps = 3/71 (4%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W      +       ++      +                 + +L+ G +Y   V +V +
Sbjct: 21  WAPPPSIDLT---NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYE 77

Query: 109 GGPGEPSDPTA 119
                P     
Sbjct: 78  QHESTPLRGRQ 88

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 6e-05
 Identities = 6/48 (12%), Positives = 12/48 (25%)

Query: 158 CPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                             + +L+ G +Y   V +V +     P     
Sbjct: 41  NEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ 88

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 5e-13
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 205 APHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK 264
           AP+    +K+             V A +  +F     G P+PT  WL N      + R  
Sbjct: 1   APYWTNTEKMEK-------RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIG 53

Query: 265 IVN-DDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
                ++   L +      D G YT  V+N +G+   T  + V+
Sbjct: 54  GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.7 bits (151), Expect = 6e-13
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITAT 468
            D P Q  V D       +EWTPP+          +++     G   K    +   ++  
Sbjct: 4   IDGPTQILVRDVSDTVAFVEWTPPRAKVDF----ILLKYGLVGGEGGKTTFRLQPPLSQY 59

Query: 469 SVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           SV  L+ G  YE  + AV      + S    
Sbjct: 60  SVQALRPGSRYEVSISAVRGTNESDASSTQF 90

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
           + V+D P+     +   +++ +   +EW  PR          +++   +          +
Sbjct: 1   IPVIDGPTQ----ILVRDVSDTVAFVEWTPPRAKVD----FILLKYGLVGGEGGKTTFRL 52

Query: 364 SGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPL 395
               ++   + L  G  Y   + AV    ES   
Sbjct: 53  QPPLSQYSVQALRPGSRYEVSISAVRGTNESDAS 86

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 8/52 (15%), Positives = 16/52 (30%)

Query: 154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                   +   + +    +  V  L  G++YE  + AV      + S    
Sbjct: 39  GLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQF 90

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 9/58 (15%), Positives = 18/58 (31%)

Query: 62  GKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
             +L          +   + +    +  V  L  G++YE  + AV      + S    
Sbjct: 33  FILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQF 90

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 6e-13
 Identities = 21/99 (21%), Positives = 28/99 (28%), Gaps = 9/99 (9%)

Query: 413 PGQPTVTDWGKDHVDLEWTP-PKKDGGSPISQYIIEKKPKYGP--------WEKACIVPA 463
           PG   V        ++ W P P K     +  Y I                 +K      
Sbjct: 18  PGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQG 77

Query: 464 NITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           + T   +P L+    Y   V  VN  G G  S      T
Sbjct: 78  SKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT 116

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 3e-11
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 13/125 (10%)

Query: 300 GTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRA-PRDDGGTDILHYVVEKMDMETGRWV 358
           G++  +  D+P    G ++ + +  +   + W   P       +  Y +     ++    
Sbjct: 4   GSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKR 63

Query: 359 PMG---------DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGR 409
                         S T+     L     Y   V+ VN  GE              P G 
Sbjct: 64  NRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPA---SPDRVFNTPEGS 120

Query: 410 PDRPG 414
               G
Sbjct: 121 GPSSG 125

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 12/52 (23%), Positives = 18/52 (34%)

Query: 153 DQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
            + +   I +K    +G    G +  L   + Y   V  VN  G G  S   
Sbjct: 61  SKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDR 112

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 12/48 (25%), Positives = 16/48 (33%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
              I +K    +G    G +  L   + Y   V  VN  G G  S   
Sbjct: 65  RRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDR 112

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 7e-13
 Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 413 PGQPTVTDWGK--DHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWE-KACIVPANITATS 469
           P +  +T+     +   ++W  P+      IS+YI+  +PK      K   +P ++ + +
Sbjct: 3   PVEVFITETPSQPNSHPIQWNAPQPS---HISKYILRWRPKNSVGRWKEATIPGHLNSYT 59

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           +  LK G  YE ++I++ + G  E ++     T
Sbjct: 60  IKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTT 92

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 9/50 (18%), Positives = 17/50 (34%)

Query: 156 HLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                  K A   G      +  L  G  YE +++++ + G  E +    
Sbjct: 40  KNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDF 89

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 10/51 (19%), Positives = 18/51 (35%)

Query: 69  EGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
             N     K A   G      +  L  G  YE +++++ + G  E +    
Sbjct: 39  PKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDF 89

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 311 SPPEGP-LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           S P    +  +    +S  ++W AP+      I  Y++      +        + G    
Sbjct: 1   SGPVEVFITETPSQPNSHPIQWNAPQPS---HISKYILRWRPKNSVGRWKEATIPGHLNS 57

Query: 370 A--ENLIEGHDYNFRVKAVNKIGESLP 394
              + L  G  Y  ++ ++ + G    
Sbjct: 58  YTIKGLKPGVVYEGQLISIQQYGHQEV 84

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (152), Expect = 7e-13
 Identities = 13/100 (13%), Positives = 23/100 (23%), Gaps = 4/100 (4%)

Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEK---KPKYGPWEKACIVPANI 465
           R   P    V        ++ W   +             +               +    
Sbjct: 2   RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ 61

Query: 466 TATSVPDLKEGEEYEFRVIAVNK-GGPGEPSKASAPVTCK 504
               +  L    +YEF+V      G     S  S P+  +
Sbjct: 62  EWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR 101

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-08
 Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 5/89 (5%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW----VPMGDVSG 365
              P   L+  ++    CN+ W   +     +       +       W    +       
Sbjct: 3   LMAPIS-LQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ 61

Query: 366 TYTRAENLIEGHDYNFRVKAVNKIGESLP 394
            +   E L     Y F+V+     GE   
Sbjct: 62  EWICLETLTPDTQYEFQVRVKPLQGEFTT 90

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 11/62 (17%), Positives = 15/62 (24%), Gaps = 1/62 (1%)

Query: 152 FDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK-GGPGEPSDPTAPHIAR 210
                           +       +  L    QYEF+V      G     S  + P   R
Sbjct: 42  TLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR 101

Query: 211 AK 212
            K
Sbjct: 102 TK 103

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 1/79 (1%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
             + +       + +   L  G+          +       +  L    QYEF+V     
Sbjct: 25  ISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPL 84

Query: 109 -GGPGEPSDPTAPHIARAK 126
            G     S  + P   R K
Sbjct: 85  QGEFTTWSPWSQPLAFRTK 103

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 7e-13
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P  P          + + +       DGGSPI  Y++  +     W+    +P+      
Sbjct: 1   PSAPKLEGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVM 59

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           +  L    EYE  V+A N+ G  + +       
Sbjct: 60  LKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTA 92

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 5e-08
 Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 1/85 (1%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           PS P+          +S  +      D G     + V  +      +          +  
Sbjct: 1   PSAPKLE-GQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVM 59

Query: 370 AENLIEGHDYNFRVKAVNKIGESLP 394
            ++L    +Y   V A N+ G+S  
Sbjct: 60  LKSLDWNAEYEVYVVAENQQGKSKA 84

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 9/54 (16%), Positives = 18/54 (33%)

Query: 152 FDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                L   W+   +    +    +  L    +YE  V+A N+ G  + +    
Sbjct: 36  VRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 89

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.2 bits (150), Expect = 9e-13
 Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 4/96 (4%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
                   +       ++L W   +         Y +    +   W +  +         
Sbjct: 3   SLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVL---EPRVL- 58

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
           +  L+    Y  RV  +   GPG  S      T  P
Sbjct: 59  LTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPP 94

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (119), Expect = 1e-08
 Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 4/85 (4%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
                  LK          L W   R       L Y +  ++ +      + +     T 
Sbjct: 3   SLSG-LSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLEPRVLLT- 60

Query: 370 AENLIEGHDYNFRVKAVNKIGESLP 394
              L     Y  RV+ +  +G    
Sbjct: 61  --KLQPDTTYIVRVRTLTPLGPGPF 83

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 4/35 (11%)

Query: 90  VLDLIEGNQYEFRVLAVNKGGPGEPSDP----TAP 120
           +  L     Y  RV  +   GPG  S      T+P
Sbjct: 59  LTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP 93

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 4/35 (11%)

Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDP----TAP 206
           +  L     Y  RV  +   GPG  S      T+P
Sbjct: 59  LTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP 93

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 1e-12
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           PD+   P VT        + W  P  +G   +++Y +E     G  +          +  
Sbjct: 1   PDQCKPPQVTCRSATCAQVNWEVPLSNGT-DVTEYRLEWGGVEGSMQ--ICYCGPGLSYE 57

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           +  L     Y  RV A++  G G  S+  A VT
Sbjct: 58  IKGLSPATTYYCRVQALSVVGAGPFSEVVACVT 90

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 4e-08
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           P     P + +  + +   + W  P  +G  D+  Y +E   +E    +      G    
Sbjct: 1   PDQC-KPPQVTCRSATCAQVNWEVPLSNGT-DVTEYRLEWGGVEGSMQICY-CGPGLSYE 57

Query: 370 AENLIEGHDYNFRVKAVNKIGESLP 394
            + L     Y  RV+A++ +G    
Sbjct: 58  IKGLSPATTYYCRVQALSVVGAGPF 82

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 5e-04
 Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 557 PGKPSKPEATDVDKDHIKIKWQQPISNGGSAIKGYEVERRERTSGRWIKITPD 609
           P +   P+ T       ++ W +   + G+ +  Y +E         I     
Sbjct: 1   PDQCKPPQVTCRSATCAQVNW-EVPLSNGTDVTEYRLEWGGVEGSMQICYCGP 52

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 402 TAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI- 460
           T +     P +       +     + + W PP +  G  I+ YII             + 
Sbjct: 6   TFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVI 64

Query: 461 --VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
             V  N     + +L     Y F++ A N  G G  S+A    T K
Sbjct: 65  EPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPK 110

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 10/108 (9%)

Query: 305 TVLDIPSPPEGPLK--PSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW----V 358
           T   +P+ P   +          +  + W+ P +  G  I  Y++              +
Sbjct: 6   TFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANG-KITGYIIYYSTDVNAEIHDWVI 64

Query: 359 PMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
                +    + + L     Y F+++A N  G          +  + P
Sbjct: 65  EPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPM---SEAVQFRTP 109

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWE-KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN 107
           W+  ++  G      +    + N  I +       G+    ++ +L     Y F++ A N
Sbjct: 34  WQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARN 93

Query: 108 KGGPGEPSDPTAPHIARA 125
             G G  S+       +A
Sbjct: 94  SKGMGPMSEAVQFRTPKA 111

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 10/45 (22%), Positives = 18/45 (40%)

Query: 167 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 211
             G+    ++ +L     Y F++ A N  G G  S+       +A
Sbjct: 67  VVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA 111

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.6 bits (148), Expect = 2e-12
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 409 RPDRPGQPTVT----DWGKDHVDLEWTPPKK---DGGSPISQYIIEKKPKYGPWEKACIV 461
            P+ P   T+        K ++ ++W+PP       G    +Y I  KP     E     
Sbjct: 2   EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKP-EEAEEWEIHF 60

Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGP-GEPSKASAPVT 502
             + T   V DL  G++Y  +       G     S+ S+   
Sbjct: 61  TGHQTQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSVEM 102

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.1 bits (139), Expect = 4e-11
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 310 PSPPEGP---LKPSNITKSSCNLEWRAPR---DDGGTDILHYVVEKMDMETGRWVPMGDV 363
           P PP      +K     K+   ++W  P       G   + Y +     E   W      
Sbjct: 3   PEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTG 62

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIG 390
             T  +  +L  G  Y  + +     G
Sbjct: 63  HQTQFKVFDLYPGQKYLVQTRCKPDHG 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.1 bits (147), Expect = 3e-12
 Identities = 21/91 (23%), Positives = 34/91 (37%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           +    +V  G +  F   VI    P   W  +D  +    ++    +     L +   K 
Sbjct: 7   KPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKG 66

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTVLDIPSP 312
            D G YT+  KNS+GT +    + V     P
Sbjct: 67  DDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (147), Expect = 4e-12
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANI---T 466
             +P  P V       ++L W   +K+      +  +    +    +            T
Sbjct: 16  LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYAT 75

Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
              V  L+    Y+FR+   +  G  E S   +  T + 
Sbjct: 76  RHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRE 114

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 8/118 (6%)

Query: 293 NSWGTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD----ILHYVVE 348
           +S  +     KV  L  P PP        +T  S  L W   + +         L + +E
Sbjct: 2   SSGSSGMEPHKVVPLSKPHPPV----VGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIE 57

Query: 349 KMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
           + D +   +  +     T    E L     Y FR+K  +  GE       S  T ++ 
Sbjct: 58  EEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRES 115

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 4e-12
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 33/130 (25%)

Query: 212 KKVSPYINRDQLS----DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITII--------- 258
           ++  P I+ D        I V AG+    D+ + G+P PT  W                 
Sbjct: 1   RQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPD 60

Query: 259 --------------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD 298
                               ++ R ++      +   V  +++ D G+YT+ VKN  G D
Sbjct: 61  APEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED 120

Query: 299 KGTAKVTVLD 308
           +    V V+D
Sbjct: 121 QVNLTVKVID 130

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 6e-12
 Identities = 11/96 (11%), Positives = 24/96 (25%), Gaps = 5/96 (5%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P++P   +        +  EW   + +     +  +  +   +   +         + T 
Sbjct: 4   PEKPKNLSCIVNEGKKMRCEWDGGR-ETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV 62

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
                     E  V A N  G          +   P
Sbjct: 63  DYSTVYFVNIEVWVEAENALGKVTSD----HINFDP 94

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 8/98 (8%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV-PMGDVSGTYT 368
           P  P+  L            EW     +   +    +  +             D   + T
Sbjct: 4   PEKPKN-LSCIVNEGKKMRCEW-DGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCT 61

Query: 369 RAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
              + +   +    V+A N +G+       S     DP
Sbjct: 62  VDYSTVYFVNIEVWVEAENALGKV-----TSDHINFDP 94

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 59.4 bits (143), Expect = 7e-12
 Identities = 20/97 (20%), Positives = 28/97 (28%), Gaps = 15/97 (15%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P  P     T      + L WT    + G                      +   +T T+
Sbjct: 4   PTAPTNLASTAQTTSSITLSWTASTDNVGV-----------TGYDVYNGTALATTVTGTT 52

Query: 470 --VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
             +  L     Y F V A +    G  S AS  V+ K
Sbjct: 53  ATISGLAADTSYTFTVKAKDAA--GNVSAASNAVSVK 87

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 54.0 bits (129), Expect = 5e-10
 Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           P+ P   L  +  T SS  L W A  D+ G  +  Y V               V+GT   
Sbjct: 4   PTAPTN-LASTAQTTSSITLSWTASTDNVG--VTGYDVYNGTALATT------VTGTTAT 54

Query: 370 AENLIEGHDYNFRVKAVNKIGES 392
              L     Y F VKA +  G  
Sbjct: 55  ISGLAADTSYTFTVKAKDAAGNV 77

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 1/51 (1%)

Query: 68  IEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK-GGPGEPSDP 117
           + G          T        +  L     Y F V A +  G     S+ 
Sbjct: 33  VTGYDVYNGTALATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNA 83

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 8/49 (16%), Positives = 11/49 (22%), Gaps = 1/49 (2%)

Query: 156 HLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK-GGPGEPSDP 203
                      T        +  L     Y F V A +  G     S+ 
Sbjct: 35  GYDVYNGTALATTVTGTTATISGLAADTSYTFTVKAKDAAGNVSAASNA 83

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 9e-12
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 5/89 (5%)

Query: 411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSV 470
           + P      +       L WT P       +  +        G   +  ++P  IT+  +
Sbjct: 3   EAPRDLEAKEVTPRTALLTWTEPPVRPAGYLLSFH-----TPGGQTQEILLPGGITSHQL 57

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
             L     Y  R+ A+       P   S 
Sbjct: 58  LGLFPSTSYNARLQAMWGQSLLPPVSTSF 86

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (123), Expect = 4e-09
 Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 5/85 (5%)

Query: 311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRA 370
             P   L+   +T  +  L W  P       +L +              +     T  + 
Sbjct: 3   EAPRD-LEAKEVTPRTALLTWTEPPVRPAGYLLSFHTPGGQT----QEILLPGGITSHQL 57

Query: 371 ENLIEGHDYNFRVKAVNKIGESLPL 395
             L     YN R++A+       P+
Sbjct: 58  LGLFPSTSYNARLQAMWGQSLLPPV 82

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 9/52 (17%), Positives = 15/52 (28%)

Query: 154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
            FH      +     G     ++L L     Y  R+ A+       P   + 
Sbjct: 35  SFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSF 86

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 7/48 (14%), Positives = 13/48 (27%)

Query: 72  HPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
                +     G     ++L L     Y  R+ A+       P   + 
Sbjct: 39  PGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSF 86

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (143), Expect = 1e-11
 Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 9/94 (9%)

Query: 410 PDRPGQPT-VTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIV------- 461
           P  P   + +     + +  +W P   +   P S  +   + +     +   +       
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWEPGP-ETHLPTSFILKSFRSRADCQYQGDTIPDCVAKK 63

Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS 495
             N  +    +L   +     V A N  G  E  
Sbjct: 64  RQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESP 97

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.2 bits (142), Expect = 2e-11
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 12/105 (11%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDG--GTDILHYVVEKMDMETGRWVPM-----GD 362
           P+ P       ++T +S   +W    +     + IL     + D +              
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64

Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPF 407
            +      +NL+        V+A N +G S     +SP    DP 
Sbjct: 65  QNNCSIPRKNLLLYQYMAIWVQAENMLGSS-----ESPKLCLDPM 104

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 2/93 (2%)

Query: 111 PGEPSDPTAPHIARAKKGKCYHLVG--TLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTE 168
           P  PS+ +           C    G  T L  S   +  RS    Q+    I +  A+  
Sbjct: 5   PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64

Query: 169 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 201
            +       +L+        V A N  G  E  
Sbjct: 65  QNNCSIPRKNLLLYQYMAIWVQAENMLGSSESP 97

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 2e-11
 Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 1/93 (1%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P               + L W  P+      I  Y I    K      + +  +      
Sbjct: 1   PSTVPIMHQVSATMRSITLSWPQPE-QPNGIILDYEIRYYEKEHNEFNSSMARSQTNTAR 59

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           +  L+ G  Y  +V A    G G+ S      T
Sbjct: 60  IDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT 92

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 1/85 (1%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           PS     +   + T  S  L W  P    G  + + +             M        R
Sbjct: 1   PSTVPI-MHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTAR 59

Query: 370 AENLIEGHDYNFRVKAVNKIGESLP 394
            + L  G  Y  +V+A    G    
Sbjct: 60  IDGLRPGMVYVVQVRARTVAGYGKF 84

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 9/53 (16%), Positives = 15/53 (28%)

Query: 152 FDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
              +         +     T   ++  L  G  Y  +V A    G G+ S   
Sbjct: 36  IRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKM 88

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 5e-05
 Identities = 9/48 (18%), Positives = 14/48 (29%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
                   +     T   ++  L  G  Y  +V A    G G+ S   
Sbjct: 41  KEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKM 88

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.3 bits (140), Expect = 3e-11
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 214 VSPYIN-RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK--DRFKIVNDDK 270
           V P +  R  + +     G +     +  G P PT  W  +   I ++  D  K +  D 
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 61

Query: 271 STKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
           S++L + +  + D   Y    +N  G    +  + V  
Sbjct: 62  SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 57.5 bits (138), Expect = 4e-11
 Identities = 22/92 (23%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKL 274
           +P   +     I V+ G +      V G P P   W  N    +S  R  + +      L
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNA-KPLSGGRATVTDSG----L 56

Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
            +   K GD G Y     N  G       V V
Sbjct: 57  VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 6e-11
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 411 DRPGQPTVT-DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           + P  P+V  +    H  L WTP  +   S    Y +           +    +   +  
Sbjct: 3   ELPSPPSVWFEAEFFHHILHWTPIPQQSESTC--YEVALLRYGIESWNSISQCSQTLSYD 60

Query: 470 ----VPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
                 DL     Y  RV AV+     + +  +   +
Sbjct: 61  LTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFS 97

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 4e-08
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 10/101 (9%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT- 366
           ++PSPP    +          L W             Y V  +      W  +   S T 
Sbjct: 3   ELPSPPSVWFEAEFF---HHILHWTPIPQQSE--STCYEVALLRYGIESWNSISQCSQTL 57

Query: 367 ----YTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITA 403
                    +L   + Y  RV+AV+    S   V  +  + 
Sbjct: 58  SYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSV 98

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 120
             +C+QT         LDL   N Y  RV AV+     + +     
Sbjct: 50  ISQCSQTLSYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTR 95

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 12/46 (26%), Positives = 17/46 (36%)

Query: 161 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAP 206
             +C+QT         LDL   N Y  RV AV+     + +     
Sbjct: 50  ISQCSQTLSYDLTAVTLDLYHSNGYRARVRAVDGSRHSQWTVTNTR 95

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 6e-11
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 13/105 (12%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND-------------ITIISKDR 262
           P +     ++     G + EF   V  +  P  +W+ +                 + K  
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 263 FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
                D +   L + +    D+G YT    NS G    +A +TVL
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 2/92 (2%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
           P I   ++    V  GS+  F + V+G+P P  EW  N + I   DR      + +    
Sbjct: 5   PKIFE-RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 276 VF-DSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
           V  D    DS    +   N  G     A + V
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.3 bits (134), Expect = 1e-10
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 5/96 (5%)

Query: 402 TAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIV 461
            A DP      P    + ++ +  V L W+         I+ Y    +P     E     
Sbjct: 2   AALDP---MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKAT 58

Query: 462 PANITAT--SVPDLKEGEEYEFRVIAVNKGGPGEPS 495
                A    +  L+    YEF++ + +     E S
Sbjct: 59  IEGAHARSFKIAPLETATMYEFKLQSFSAASASEFS 94

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.8 bits (112), Expect = 1e-07
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           P P    L+    ++++  L W    D     I  Y        +        + G + R
Sbjct: 6   PMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHAR 65

Query: 370 A---ENLIEGHDYNFRVKAVNKIGES 392
           +     L     Y F++++ +    S
Sbjct: 66  SFKIAPLETATMYEFKLQSFSAASAS 91

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 8/50 (16%), Positives = 15/50 (30%)

Query: 152 FDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS 201
           +        + K           K+  L     YEF++ + +     E S
Sbjct: 45  YRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFS 94

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 9/68 (13%), Positives = 16/68 (23%)

Query: 48  IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN 107
                   E              +   + K           K+  L     YEF++ + +
Sbjct: 27  WSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFS 86

Query: 108 KGGPGEPS 115
                E S
Sbjct: 87  AASASEFS 94

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 1e-10
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACI-VPANITATSVP 471
               +  D     + L WTP      S I  Y I               V +++   +V 
Sbjct: 9   LTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVT 65

Query: 472 DLKEGEEYEFRVIAVNKGGPGEPSKASA 499
            L+ G +Y+  VI +  GG   P+  + 
Sbjct: 66  GLEPGIDYDISVITLINGGESAPTTLTQ 93

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
           +   ++P      L   +IT SS  L W        + I+ Y +  +    G  +    V
Sbjct: 1   MRGSEVPQL--TDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFV 55

Query: 364 SGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQ 398
             +        L  G DY+  V  +   GES P    
Sbjct: 56  DSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLT 92

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 4e-05
 Identities = 12/66 (18%), Positives = 20/66 (30%)

Query: 54  QTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE 113
                T  G  + ++     I       +       V  L  G  Y+  V+ +  GG   
Sbjct: 28  PLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESA 87

Query: 114 PSDPTA 119
           P+  T 
Sbjct: 88  PTTLTQ 93

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 10/52 (19%), Positives = 15/52 (28%)

Query: 154 QFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
                 I       +       V  L  G  Y+  V+ +  GG   P+  T 
Sbjct: 42  VAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQ 93

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 1e-10
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 4/108 (3%)

Query: 310 PSPPEGP-LKPSNITKSSCNLEWRAPRDDGG---TDILHYVVEKMDMETGRWVPMGDVSG 365
           P+PP    +  S    S   L W  P           + Y  +     +         + 
Sbjct: 5   PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 64

Query: 366 TYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRP 413
           +    ++L    +Y FR++ + + G+          +      RP + 
Sbjct: 65  SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKE 112

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 3e-10
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 409 RPDRPGQPTVT--DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPAN 464
           +P+ P   +V   +     + L WT P       +   I  +                + 
Sbjct: 4   KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTAST 63

Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPRFVAP 510
            ++ +V DLK   EY FR+  + + G G  S  S   +       P
Sbjct: 64  RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRP 109

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 2/105 (1%)

Query: 114 PSDPTAPHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWEKCAQTEGDTPK 173
           P+ P    +  +++      +           + +  +  +      W +    +  + +
Sbjct: 5   PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTR 64

Query: 174 GKVL--DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAKKVSP 216
                 DL    +Y FR+  + + G G  SD +        +  P
Sbjct: 65  SSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRP 109

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 7e-04
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 92  DLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIAR 124
           DL    +Y FR+  + + G G  SD +      
Sbjct: 71  DLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 103

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 19/85 (22%), Positives = 38/85 (44%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           +   + V  G +  F  +  GEP+PT  WL     + +  R ++      +  ++   + 
Sbjct: 5   KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQA 64

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTV 306
            D G Y++ V+NS G  +    +T+
Sbjct: 65  SDEGNYSVVVENSEGKQEAEFTLTI 89

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 2e-10
 Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 6/93 (6%)

Query: 410 PDRPGQPTVTD-WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGP--WEKACIVPANIT 466
              P    +        + + W          I+ Y I   P  G        +V A+ +
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPTNGQQGNSLEEVVHADQS 58

Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           + +  +L  G EY   V  V       P   + 
Sbjct: 59  SCTFDNLSPGLEYNVSVYTVKDDKESVPISDTI 91

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 16/87 (18%), Positives = 25/87 (28%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
            SPP      +N       + W        T            +      +     +   
Sbjct: 2   LSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCT 61

Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLV 396
            +NL  G +YN  V  V    ES+P+ 
Sbjct: 62  FDNLSPGLEYNVSVYTVKDDKESVPIS 88

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 6e-05
 Identities = 8/54 (14%), Positives = 11/54 (20%)

Query: 152 FDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 205
               +             D       +L  G +Y   V  V       P   T 
Sbjct: 38  TTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTI 91

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 8/49 (16%), Positives = 10/49 (20%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTA 119
                        D       +L  G +Y   V  V       P   T 
Sbjct: 43  GQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTI 91

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.0 bits (131), Expect = 3e-10
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTK 273
           + P I       IK++AG     +++ IG P PT  W   D          +     +T 
Sbjct: 1   LKPKILT-ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTS 59

Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
           +    +KR DSG Y L VKN  G D+   +V V
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 3/96 (3%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSP---ISQYIIEKKPKYGPWEKACIVPANIT 466
              P     +    D + + W                Y +  K       K     A   
Sbjct: 2   MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 61

Query: 467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           +  V  LK    YEF V+          S  +   T
Sbjct: 62  SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTT 97

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 12/89 (13%), Positives = 21/89 (23%), Gaps = 5/89 (5%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD---ILHYVVEKMDMETGRWVP-MGDVSG 365
             PP G ++ S ++  +  + W               +Y V               + + 
Sbjct: 2   MMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 60

Query: 366 TYTRAENLIEGHDYNFRVKAVNKIGESLP 394
                  L     Y F V        S  
Sbjct: 61  LSYLVTGLKPNTLYEFSVMVTKGRRSSTW 89

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 8e-04
 Identities = 10/52 (19%), Positives = 11/52 (21%)

Query: 152 FDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 203
                  P   K       T    V  L     YEF V+          S  
Sbjct: 41  VRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT 92

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 9e-04
 Identities = 11/47 (23%), Positives = 12/47 (25%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 117
           N P   K       T    V  L     YEF V+          S  
Sbjct: 46  NIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMT 92

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 5e-10
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 1/87 (1%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
            D  G  T   +  + V L W  PK+  G  +   +  ++                    
Sbjct: 5   DDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERG 64

Query: 470 -VPDLKEGEEYEFRVIAVNKGGPGEPS 495
                     Y  R+ A +  G G  +
Sbjct: 65  CRLRGLSPGNYSVRIRATSLAGNGSWT 91

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
                GP+       +  +L W+ P++  G  +L+ V  +   +    +          R
Sbjct: 5   DDIV-GPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALER 63

Query: 370 AE--NLIEGHDYNFRVKAVNKIGESLP 394
                 +   +Y+ R++A +  G    
Sbjct: 64  GCRLRGLSPGNYSVRIRATSLAGNGSW 90

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 1e-04
 Identities = 13/77 (16%), Positives = 28/77 (36%)

Query: 49  WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK 108
           W++  +  G     +V     G+  +     +      +G  L  +    Y  R+ A + 
Sbjct: 25  WQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGNYSVRIRATSL 84

Query: 109 GGPGEPSDPTAPHIARA 125
            G G  ++PT  ++   
Sbjct: 85  AGNGSWTEPTYFYVTDY 101

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 9e-04
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 176 VLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARA 211
            L  +    Y  R+ A +  G G  ++PT  ++   
Sbjct: 66  RLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDY 101

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (130), Expect = 6e-10
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 7/99 (7%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGG-SPISQYIIEKKPKYGPWEKAC---IVPANI 465
              P         +  + L+W         +PI  + I  +P     +      +V  + 
Sbjct: 2   VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 61

Query: 466 TATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
              S+  L+    Y+ ++   N+GG  E    S  + C+
Sbjct: 62  YWHSISHLQPETSYDIKMQCFNEGGESEF---SNVMICE 97

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 12/90 (13%), Positives = 25/90 (27%), Gaps = 7/90 (7%)

Query: 312 PPEGP--LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV-----S 364
           P  GP       + +++  L+W           +H                         
Sbjct: 1   PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 60

Query: 365 GTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
             +    +L     Y+ +++  N+ GES  
Sbjct: 61  RYWHSISHLQPETSYDIKMQCFNEGGESEF 90

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 11/52 (21%), Positives = 17/52 (32%)

Query: 152 FDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 203
                      K    EGD     +  L     Y+ ++   N+GG  E S+ 
Sbjct: 42  RPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNV 93

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 117
           ++    K    EGD     +  L     Y+ ++   N+GG  E S+ 
Sbjct: 47  DNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNV 93

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 7e-10
 Identities = 24/104 (23%), Positives = 33/104 (31%), Gaps = 11/104 (10%)

Query: 409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYII-----EKKPKYGPWEKACIVPA 463
           +P  P    ++   +DH  L W+       S              K     WE A I+ +
Sbjct: 5   QPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLS 63

Query: 464 NITATS--VPDLKEGEEYEFRVIAVNKGG---PGEPSKASAPVT 502
           N +  +     L     Y  RV      G    G PSK S  V 
Sbjct: 64  NTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVC 107

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 54.1 bits (129), Expect = 8e-10
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 206 PHIARAKKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK- 264
           PH+       PY  +  + D++V  GS   FD  V G P P   W  +D  +     F+ 
Sbjct: 5   PHVK------PYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI 57

Query: 265 IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
             +++ +  L + +    D   YT    NS G    TA++ V
Sbjct: 58  DYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 54.2 bits (129), Expect = 8e-10
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 410 PDRPGQP----TVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYGPWEKACIVPAN 464
           PD P +            +++ + WTP  + +  +P   Y +  K              +
Sbjct: 1   PDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFD 60

Query: 465 ITATS--VPDLKEGEEYEFRVIAVNKGGPGEPS 495
               +  + D     +Y  +V+A+N  G    +
Sbjct: 61  WRQNNIVIADQPTFVKYLIKVVAINDRGESNVA 93

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 48.4 bits (114), Expect = 8e-08
 Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 4/91 (4%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAP-RDDGGTDILHYVVEKMDMETGRW---VPMGDV 363
           D+P      +       ++  + W      +      HY V               + D 
Sbjct: 2   DVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDW 61

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
                   +      Y  +V A+N  GES  
Sbjct: 62  RQNNIVIADQPTFVKYLIKVVAINDRGESNV 92

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 8/53 (15%), Positives = 17/53 (32%)

Query: 152 FDQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
           + +      WE     +       + D     +Y  +V+A+N  G    +   
Sbjct: 44  WKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEE 96

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 8/48 (16%), Positives = 15/48 (31%)

Query: 71  NHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
               WE     +       + D     +Y  +V+A+N  G    +   
Sbjct: 49  PAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEE 96

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 8e-10
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 11/104 (10%)

Query: 410 PDRPGQPTVT------DWGKDHVDLEWTPPKK---DGGSPISQYIIEKKPKYGPWEKACI 460
           PD P     T            + + W  P+      G  + +Y ++ K       K   
Sbjct: 1   PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMD 60

Query: 461 VPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
                +   V  LK  +EYE RV +  +   G   + S  +   
Sbjct: 61  PILTTSVP-VYSLKVDKEYEVRVRSKQRNS-GNYGEFSEVLYVT 102

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 5e-07
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 310 PSPPEGP-----LKPSNITKSSCNLEWRAPRD---DGGTDILHYVVEKMDMETGRWVPMG 361
           P PP                +   + W APR+     G  +L Y ++  ++   +W  M 
Sbjct: 1   PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMD 60

Query: 362 DVSGTYTRAENLIEGHDYNFRVKAVNKIGES 392
            +  T     +L    +Y  RV++  +   +
Sbjct: 61  PILTTSVPVYSLKVDKEYEVRVRSKQRNSGN 91

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 2/54 (3%)

Query: 153 DQFHLCPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG--PGEPSDPT 204
            Q+      +        T    V  L    +YE RV +  +     GE S+  
Sbjct: 46  LQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVL 99

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 75  WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG--PGEPSDPT 118
            +        T    V  L    +YE RV +  +     GE S+  
Sbjct: 54  TKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVL 99

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.7 bits (128), Expect = 9e-10
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)

Query: 212 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
           ++ +P I     +D     G     +    G P+P  +W   D +  SK           
Sbjct: 1   RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WLSSE 54

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
             L + +    D G Y    +N  G D    ++ +
Sbjct: 55  PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 2e-09
 Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 6/107 (5%)

Query: 402 TAKDPFGRPDRPGQPTVTDW--GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKAC 459
           T +        P  P+          + + WTPP+      +  Y I       P  +  
Sbjct: 10  TFESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQN-IVVRGYAIGYGIGS-PHAQTI 67

Query: 460 IVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKPR 506
            V       ++ +L     Y   + A N  G G P         +P 
Sbjct: 68  KVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPL--YESAVTRPH 112

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 305 TVLDIPSPPEGPLKPS-NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDV 363
           + LD    PE P         +S  + W  P ++    +  Y +              D 
Sbjct: 13  SDLDETRVPEVPSSLHVRPLVTSIVVSWT-PPENQNIVVRGYAIGYGIGSPHAQTIKVDY 71

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGESLPL 395
              Y   ENL     Y   +KA N +GE +PL
Sbjct: 72  KQRYYTIENLDPSSHYVITLKAFNNVGEGIPL 103

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-09
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 10/103 (9%)

Query: 409 RPDRPGQPTVT----DWGKDHVDLEWTPPKK---DGGSPISQYIIEKKPKYGPWEKACIV 461
           +PD P +  V     +  K ++ ++W+PP       G     Y I  KP+     +    
Sbjct: 2   QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA 61

Query: 462 PANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCK 504
                   +  L  G++Y  +V      G    S  S     +
Sbjct: 62  GQQTEFK-ILSLHPGQKYLVQVRCKPDHGY--WSAWSPATFIQ 101

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 4e-08
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 10/101 (9%)

Query: 310 PSPPEGP---LKPSNITKSSCNLEWRAPR---DDGGTDILHYVVEKMDMETGRWVPMGDV 363
           P PP      +K     K    ++W  P       G   L Y +     +   W      
Sbjct: 3   PDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAG 62

Query: 364 SGTYTRAENLIEGHDYNFRVKAVNKIGE----SLPLVCQSP 400
             T  +  +L  G  Y  +V+     G     S     Q P
Sbjct: 63  QQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIP 103

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 3e-09
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           P  P   T+    +  ++L W        +   +++++ +  +        V       S
Sbjct: 3   PWAPENLTLHKLSESQLELNWNNRF---LNHCLEHLVQYRTDWDHSWTEQSV-DYRHKFS 58

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEP---SKASAPVT 502
           +P +   + Y FRV +      G     S+ S P+ 
Sbjct: 59  LPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIH 94

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYT 368
           IP  PE  L    +++S   L W     +     L ++V+        W           
Sbjct: 2   IPWAPEN-LTLHKLSESQLELNWNNRFLN---HCLEHLVQYRTDWDHSWTEQSVDYRHKF 57

Query: 369 RAENLIEGHDYNFRVKAVNKIG 390
              ++     Y FRV++     
Sbjct: 58  SLPSVDGQKRYTFRVRSRFNPL 79

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 3e-09
 Identities = 12/114 (10%), Positives = 23/114 (20%), Gaps = 26/114 (22%)

Query: 417 TVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK------------------------Y 452
           +      D + L W P        +  +++  K                           
Sbjct: 9   SYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDID 68

Query: 453 GPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEP--SKASAPVTCK 504
            P         N     +  LK   +Y   V  +             S  +  +
Sbjct: 69  PPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQ 122

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 8/111 (7%), Positives = 18/111 (16%), Gaps = 26/111 (23%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW------------ 357
            +           +     L W         D+L +++   +                  
Sbjct: 2   ENELLK-FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSN 60

Query: 358 -------------VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPL 395
                              +        L     Y   VK +    +    
Sbjct: 61  SWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRT 111

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 5e-09
 Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 18/112 (16%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK----------------YG 453
           P  P    ++    D + L W PP    G  I +Y      +                Y 
Sbjct: 8   PGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65

Query: 454 PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP 505
             + +C V A   A +  D        FR+ A N+ G G  ++         
Sbjct: 66  GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNSK 117

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 9/107 (8%)

Query: 107 NKGGPGEPSDPTA---PHIARAKKGKCYHLVGTLLKDSIYEQLKRSGLFDQFHLCPIWE- 162
              GPG PS                      G +L+ S Y  ++ + + D          
Sbjct: 4   GSSGPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRI 63

Query: 163 -----KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 204
                              +D        FR+ A N+ G G  +   
Sbjct: 64  YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIR 110

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 17/103 (16%), Positives = 23/103 (22%), Gaps = 22/103 (21%)

Query: 311 SPPEGPLKPSNI----TKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP------- 359
           S   GP  PS +         +L W  P    G +IL Y                     
Sbjct: 3   SGSSGPGAPSTVRISKNVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFM 61

Query: 360 ----------MGDVSGTYTRAENLIEGHDYNFRVKAVNKIGES 392
                                 +        FR+ A N+ G  
Sbjct: 62  RIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYG 104

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 7/47 (14%), Positives = 13/47 (27%)

Query: 72  HPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT 118
           +   +              +D        FR+ A N+ G G  +   
Sbjct: 64  YCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIR 110

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 8e-09
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPA-NITAT 468
              P    VT    D   L W   K         + I+ +     W+ +      N  + 
Sbjct: 5   QMAPPSLQVT-KDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSM 63

Query: 469 SVPDLKEGEEYEFRVIAVNKGGP--GEPSKASAPVT 502
           ++P L+    Y  RV          G  S+ S   +
Sbjct: 64  ALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARS 99

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-05
 Identities = 10/88 (11%), Positives = 19/88 (21%), Gaps = 4/88 (4%)

Query: 307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGT 366
           ++I   P  P         S +L W   +         + ++             +    
Sbjct: 2   VNIQMAP--PSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQN 59

Query: 367 YTRAE--NLIEGHDYNFRVKAVNKIGES 392
                   L     Y  RV+        
Sbjct: 60  AHSMALPALEPSTRYWARVRVRTSRTGY 87

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 9e-09
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 411 DRPGQPTV--TDWGKDHVDLEWTPPKKDGGSPISQYIIEKKP----KYGPWEKACIVPAN 464
           D P  P++   +       +++  P+  GG PI +Y  E +      +          + 
Sbjct: 1   DTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 60

Query: 465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
               ++  LK    Y  R+ A+N  G GE S AS   T
Sbjct: 61  EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT 98

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 4e-07
 Identities = 19/92 (20%), Positives = 27/92 (29%), Gaps = 7/92 (7%)

Query: 308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-----VPMGD 362
           D PS P   +       S+  +++  P   GG  IL Y  E   +    W          
Sbjct: 1   DTPSSPS--IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 58

Query: 363 VSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
                     L     Y  R+ A+N  G    
Sbjct: 59  SMEGIVTIVGLKPETTYAVRLAALNGKGLGEI 90

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.7 bits (115), Expect = 5e-08
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
            ++D +   GS+  +     G+P P   WL +   + S++R ++   +    L+      
Sbjct: 7   VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE----LRFSKLVL 62

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTV 306
            DSG+Y    +N  GT   +A++TV
Sbjct: 63  EDSGMYQCVAENKHGTVYASAELTV 87

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 9e-08
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPI---PTKEWLCNDITIIS---------KDRFKIVNDD 269
           +     V+ G +  F   V  E +   PT +W       ++         K+ F+  +  
Sbjct: 6   KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 65

Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPP 313
            + ++++  +K   +G Y   V      D  +  + V +     
Sbjct: 66  YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 1e-07
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 399 SPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKD-GGSPISQYIIEKKPKYGPWEK 457
             +        P +P    V +     V L W   K     S ++ Y +  +       +
Sbjct: 7   GTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQ 66

Query: 458 ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPSK 496
                     ++   L   E+Y   V A   GG G  S+
Sbjct: 67  VLN---TNKTSAELVLPIKEDYIIEVKATTDGGDGTSSE 102

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 7e-05
 Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 5/102 (4%)

Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAP---RDDGGTDILHYVVEKMDM 352
           G+   +  V V    +PP  P        +   +          +  +++  Y V     
Sbjct: 1   GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTS 60

Query: 353 ETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP 394
                  +     +           DY   VKA    G+   
Sbjct: 61  SQNNVQVLNTNKTSAELVLP--IKEDYIIEVKATTDGGDGTS 100

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 12/111 (10%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           P  P   L+  N+T+    L W+ P++   T  +               P   V      
Sbjct: 1   PDGPTQ-LRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGAPPLQ-AETPGSAVDYPLH- 57

Query: 370 AENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTVTD 420
             +L+   +Y   V+ +     + P    + IT        + P      +
Sbjct: 58  --DLVLHTNYTATVRGLRGPNLTSP----ASITFTTG---LEAPRDLEAKE 99

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 15/90 (16%), Positives = 24/90 (26%), Gaps = 5/90 (5%)

Query: 410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATS 469
           PD P Q    +  +    L W PP+    +   Q                  P +     
Sbjct: 1   PDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPG-----APPLQAETPGSAVDYP 55

Query: 470 VPDLKEGEEYEFRVIAVNKGGPGEPSKASA 499
           + DL     Y   V  +       P+  + 
Sbjct: 56  LHDLVLHTNYTATVRGLRGPNLTSPASITF 85

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 230 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK-----IVNDDKSTKLKVFDSKRGDS 284
           +  ++     V G P P  +W  N   +              + +    L++ +    ++
Sbjct: 15  SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74

Query: 285 GIYTLAVKNSWGTDKGTAKVTVLDIPS 311
           G YTL  KN +G D+       +  P 
Sbjct: 75  GDYTLIAKNEYGKDEKQISAHFMGWPG 101

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 12/103 (11%)

Query: 224 SDIKVRAGSNFEF---DINVIGEPIPTKEWLCNDITIISKDRFKI-------VNDDKSTK 273
           + +++             +V G+P P+  WL N   +                   +   
Sbjct: 5   ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64

Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPS--PPE 314
           L++      ++G YTL   N +G    +     +D P    PE
Sbjct: 65  LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 4e-07
 Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 236 FDINVIGEPIPT----KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV 291
            +  V G P PT            + I    +    +     L        ++G YTL  
Sbjct: 22  IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81

Query: 292 KNSWGTDKGTAKVTVLDIPSPPE 314
           KN  GT   T     L  P P +
Sbjct: 82  KNPLGTANQTINGHFLKEPFPVD 104

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 7/92 (7%)

Query: 416 PTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKY-----GPWEKACIVPANITATSV 470
                     V + WT  ++     I  Y +  +          W+          +  +
Sbjct: 22  HNPVVLTPTTVQVTWTVDRQPQ--FIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVL 79

Query: 471 PDLKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
            +LK+G  YE +V        G  S++    T
Sbjct: 80  VNLKKGVTYEIKVRPYFNEFQGMDSESKTVRT 111

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 296 GTDKGTAKVTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTD--ILHYVVEKMDME 353
           G+   + +    ++         P  +T ++  + W   R         + Y        
Sbjct: 1   GSSGSSGRQVQKELGDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQA 60

Query: 354 TGRWVPMGDVSGTYTRA--ENLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDP 406
           T  W  +     T   A   NL +G  Y  +V+      + +    ++  T ++ 
Sbjct: 61  TSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEES 115

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 16/112 (14%)

Query: 6   RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVL 65
           ++ LGD+ +        +  ++      V W     P  ++       QT G        
Sbjct: 11  QKELGDVLVRL-----HNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATS--- 62

Query: 66  DLIEGNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDP 117
                    W+             +++L +G  YE +V        G  S+ 
Sbjct: 63  --------SWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSES 106

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-06
 Identities = 21/90 (23%), Positives = 31/90 (34%)

Query: 413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPD 472
           P +  V       V L W PP+          +  ++   G       V    T   VP 
Sbjct: 10  PPRGLVAVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPG 69

Query: 473 LKEGEEYEFRVIAVNKGGPGEPSKASAPVT 502
           L +   YEFR++A       +PS  +   T
Sbjct: 70  LIKDVLYEFRLVAFAGSFVSDPSNTANVST 99

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 9e-05
 Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 3/86 (3%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILH-YVVEKMDMETGRWVPMGDVSGTYT 368
            SPP G +  +  T     L W  P         +     +         P    + T  
Sbjct: 8   LSPPRGLV--AVRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETEL 65

Query: 369 RAENLIEGHDYNFRVKAVNKIGESLP 394
               LI+   Y FR+ A      S P
Sbjct: 66  LVPGLIKDVLYEFRLVAFAGSFVSDP 91

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-KDRFKIVNDDKSTKLKVFDSK 280
           QL D     G   E +  V  +    K +   +  I   K R++I  + K   L +  + 
Sbjct: 6   QLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGAT 65

Query: 281 RGDSGIYTLAVKNSWGTDKGTAKVTV 306
           + D+  Y++         + +AK++V
Sbjct: 66  KADAAEYSVMTTG----GQSSAKLSV 87

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 15/99 (15%), Positives = 29/99 (29%), Gaps = 12/99 (12%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTK------------EWLCNDITIISKDRFKIVNDD 269
           +  D +V  G +  F   V G  +                       +   D +   +  
Sbjct: 10  RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKV 69

Query: 270 KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
              +L + D++   +G Y   V      D     +TV +
Sbjct: 70  YLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKST--KLKVFDSKR 281
             + V  G   + + +V G   P  +W+ +   + + D+  I   ++     L +   +R
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 63

Query: 282 GDSGIYTLAVKNSWGTDKG-TAKVTV 306
            D+G Y   V++   T+      +TV
Sbjct: 64  SDAGRYWCQVEDGGETEISQPVWLTV 89

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 8e-06
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 9/99 (9%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTK-------EWLCNDITIISKDRFKIVND 268
           P + +   S   +  G            P  T        +     +   S+ RF + + 
Sbjct: 3   PRV-KAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 269 DKSTKLKVFDSKRGD-SGIYTLAVKNSWGTDKGTAKVTV 306
              ++L + +       G Y     +S G+D+    + V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 4/101 (3%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
              P G +           L W  P +   T  + Y V+         V   ++    T 
Sbjct: 5   LDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTE 64

Query: 370 AE--NLIEGHDYNFRV--KAVNKIGESLPLVCQSPITAKDP 406
               NL     Y F V  +               P++   P
Sbjct: 65  CVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEPVSLLTP 105

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 220 RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDS 279
           ++  +  + + G +     +V+    PT  W      +I K   + +    +    +   
Sbjct: 5   KNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-IRGI 63

Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTV 306
           K+ D G Y    +     +     + V
Sbjct: 64  KKTDEGTYRCEGRILARGEINFKDIQV 90

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 6/92 (6%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKL 274
             +  ++     VR G++  F        P  T  W       +          D +  L
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-----DFNGIL 56

Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
            + + +  D+G Y     N +  D+GTA + V
Sbjct: 57  TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.0 bits (92), Expect = 6e-05
 Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 2/91 (2%)

Query: 216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLK 275
           P + +DQ +++  R  +    +  + G     K     D    +              L 
Sbjct: 3   PVL-KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
               +  D G Y    +   G    +  ++ 
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVAS-SRVISF 91

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 6e-05
 Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 4/97 (4%)

Query: 212 KKVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKS 271
           +K S    +      +V  G      + +       K         +S  ++   +    
Sbjct: 2   EKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 61

Query: 272 TKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVLD 308
             L +      D   Y   V      +K + ++ V +
Sbjct: 62  RTLTISQCSLADDAAYQCVVGG----EKCSTELFVKE 94

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 7e-05
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 8/93 (8%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK--------STK 273
             SD++V    + +      G   P  EW     +  +   +               S+ 
Sbjct: 7   AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSG 66

Query: 274 LKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
           +      R D+G YT  V    G + G   + +
Sbjct: 67  ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-05
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKR 281
           Q+ +  V  G +      V G  +    W+  ++   +              L       
Sbjct: 8   QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVT-SD 66

Query: 282 GDSGIYTLAVKNSWGTDKGTAKVTV 306
            +    T   +N  G  + + +V V
Sbjct: 67  LNRKNVTCWAENDVGRAEVSVQVNV 91

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 8/92 (8%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK--------STKLK 275
            ++++   +  +      G   P  EW  +         +                T + 
Sbjct: 12  PEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGIT 71

Query: 276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
                R D+G YT  V    G   G  KV ++
Sbjct: 72  FKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 20/67 (29%)

Query: 242 GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT 301
            E   T  W  +D                  KL    +K  DSG Y   V+NS    +  
Sbjct: 29  NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 88

Query: 302 AKVTVLD 308
                ++
Sbjct: 89  ISAKFVE 95

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 9/88 (10%)

Query: 228 VRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKST--------KLKVFD 278
           V  G+      +   G P     W  + I++++ D  K      S+         L    
Sbjct: 14  VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 73

Query: 279 SKRGDSGIYTLAVKNSWGTDKGTAKVTV 306
               DSG Y    +N +GT   +    +
Sbjct: 74  VTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 13/90 (14%)

Query: 218 INRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVF 277
             RD   +      S         G P+P  + L +    +       V  D        
Sbjct: 6   DERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD-------- 57

Query: 278 DSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
                  G Y    +++ G       V VL
Sbjct: 58  -----LEGTYLCRARSTQGEVTREVTVNVL 82

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 8/111 (7%)

Query: 310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTR 369
           P+PP+     + +T ++  + WR P            V    +          +  T   
Sbjct: 11  PAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFPTADS 70

Query: 370 AE----NLIEGHDYNFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQP 416
                  L         V+ ++  GES+     +          P  P  P
Sbjct: 71  TAVELVRLRSLEAKGVTVRTLSAQGESVD---SAVAAVPPELLVPPTP-HP 117

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 228 VRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKI-------VNDDKSTKLKVFDS 279
              G+      +   G P     W  + I + +  +          V +  + +L     
Sbjct: 14  ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 73

Query: 280 KRGDSGIYTLAVKNSWGTDKGTAKVTV 306
              D+G Y+   +N +GT   +  V +
Sbjct: 74  SASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.2 bits (85), Expect = 6e-04
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDK--STKLKVFDSKR 281
            D+  +AG            P+    +  N   +      +I   ++    +L    +  
Sbjct: 11  KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLP 70

Query: 282 GDSGIYTLAVKNSWGTD-KGTAKVTVL 307
            D G+YT  V N  G   K + K+TV+
Sbjct: 71  EDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 10/87 (11%)

Query: 224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGD 283
           SD  +  G +    +       P+ +        I   +   V+  +            D
Sbjct: 7   SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLE----------LQD 56

Query: 284 SGIYTLAVKNSWGTDKGTAKVTVLDIP 310
           SG +T  V  +    +    + VL   
Sbjct: 57  SGTWTCTVLQNQKKVEFKIDIVVLAFQ 83

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 13/93 (13%)

Query: 225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN----------DDKSTKL 274
            I      N  F +     P+    W      +   +  +             D  S  L
Sbjct: 4   QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 275 KVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL 307
            +++    D   Y +   N   T K    + VL
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDTMK--FFLYVL 93

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 15/113 (13%), Positives = 31/113 (27%), Gaps = 12/113 (10%)

Query: 213 KVSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEW-------LCNDITIISKDRFKI 265
              P I            G   +    +   P P +         L +  +         
Sbjct: 5   NGPPII--SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 62

Query: 266 VNDDKSTKLKVFD-SKRGDSGIYTLAVKNSWGTDKGTAKVTVL--DIPSPPEG 315
             +   + L + +  +     IY     NS+G+D    ++     ++  P  G
Sbjct: 63  TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPSSG 115

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 1/96 (1%)

Query: 220 RDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFD 278
            ++   +K+  G    F  +     P  +  WL N+         +      +  L +  
Sbjct: 8   AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAK 67

Query: 279 SKRGDSGIYTLAVKNSWGTDKGTAKVTVLDIPSPPE 314
           ++  D G Y+    +       +       +    E
Sbjct: 68  TEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	616
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.71
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.61
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.58
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.56
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.56
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.56
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.56
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.55
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.55
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.54
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.54
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.53
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.53
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.52
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.51
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.49
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.49
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.49
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.49
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.49
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.49
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.48
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.48
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.48
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.47
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.47
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.47
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.46
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.46
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.46
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.45
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.45
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.45
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.44
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.43
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.43
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.43
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.43
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.41
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.41
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.4
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.4
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.4
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.4
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.39
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.39
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.39
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.39
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.38
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.38
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.37
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.37
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.36
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.36
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.36
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.36
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.36
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.35
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.35
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.35
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.34
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.34
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.34
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.33
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.33
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.32
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.31
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.31
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.31
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	99.31
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.3
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.3
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.3
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.3
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.29
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.29
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.29
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.29
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.28
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.28
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.28
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.28
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.28
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.27
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.27
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.26
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.26
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.26
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.26
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.25
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.24
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.24
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.24
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.24
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.24
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.23
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.23
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.22
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.22
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.22
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.22
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.22
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.21
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.21
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.2
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.2
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.19
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.19
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	99.19
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.19
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.19
d2avga1	110	Cardiac myosin binding protein C, different domain	99.18
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.17
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.17
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.17
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.17
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.17
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.16
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.16
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.16
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.16
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.16
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.16
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.16
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.16
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.15
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.15
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.15
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.14
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.14
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.14
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.14
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.13
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.13
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.13
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.13
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.13
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.13
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	99.12
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.12
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.12
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.11
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.1
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.08
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.08
d2avga1	110	Cardiac myosin binding protein C, different domain	99.08
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.08
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.07
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	99.07
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.07
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.06
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.06
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.05
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.04
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.04
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	99.04
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.03
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.03
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.02
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.02
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.02
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.02
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.01
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.01
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.01
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.01
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.0
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.0
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.0
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.99
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	98.99
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.98
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.97
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.97
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	98.97
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.96
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.95
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.94
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	98.94
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.93
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	98.93
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	98.92
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	98.92
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	98.92
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.91
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	98.91
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	98.91
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.91
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	98.91
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	98.9
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	98.9
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.9
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	98.89
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	98.88
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	98.87
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.87
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	98.86
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.86
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.85
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.84
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.83
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	98.83
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.83
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.82
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.82
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.81
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.79
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	98.78
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	98.78
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	98.78
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.77
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.76
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	98.74
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	98.74
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	98.73
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.72
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	98.71
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	98.7
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.68
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	98.67
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.66
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.65
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.64
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.64
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.63
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.63
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.62
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.62
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.62
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	98.62
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.61
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.61
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.61
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.61
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.6
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	98.59
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.58
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	98.58
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.56
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	98.55
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	98.55
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.53
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.53
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	98.53
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.53
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.52
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.48
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.47
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.45
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	98.45
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.43
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.43
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.42
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.4
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.39
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.37
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.32
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.32
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.23
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.21
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.19
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.18
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.15
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.12
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.11
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.03
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.01
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.01
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.0
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.92
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.91
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.91
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.91
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.91
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.9
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.9
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.89
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.89
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	97.87
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.87
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.86
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.85
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.84
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.84
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.83
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.83
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.83
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.82
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.82
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.82
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.82
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.81
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	97.8
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.79
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.79
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.79
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.78
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.76
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.76
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.75
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.75
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.74
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.73
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	97.73
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.72
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.72
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.71
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.71
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.71
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	97.71
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.71
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.7
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	97.7
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.69
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.66
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.66
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.65
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.65
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.64
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	97.64
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	97.63
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.62
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.62
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.62
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	97.62
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.62
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.61
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.61
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.59
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	97.59
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.58
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	97.58
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.58
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.58
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.58
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.58
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	97.57
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.57
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.57
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.56
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	97.56
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.56
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	97.55
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.55
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.55
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.54
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.54
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.54
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.54
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.53
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.53
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.52
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.52
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.51
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	97.51
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.51
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	97.51
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.5
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.5
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.5
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	97.5
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	97.5
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.49
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.49
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.49
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.47
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.47
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.47
d8faba1	103	Immunoglobulin light chain lambda variable domain,	97.47
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.46
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	97.46
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.46
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.45
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.44
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.44
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.44
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.43
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.43
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.43
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.42
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.42
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.41
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.41
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.41
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.41
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.41
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.41
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.4
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.4
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.4
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.39
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	97.39
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.38
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.37
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.37
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.37
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.36
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.35
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.35
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.35
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	97.35
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.34
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	97.34
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.34
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.33
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.32
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.32
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.32
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.31
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.31
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.31
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.3
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.3
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.29
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.29
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.29
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.29
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.29
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.28
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.28
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.27
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.26
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.26
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.26
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.24
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.24
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.24
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.24
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.24
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.23
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.23
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.22
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.22
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	97.22
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.21
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.21
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.21
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.2
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.2
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.19
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.19
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.18
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.16
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.16
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.16
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.16
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.14
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.13
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.13

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=2e-17  Score=125.15  Aligned_cols=95  Identities=32%  Similarity=0.498  Sum_probs=83.7

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      +|++|.++.+..++.++++|+|.+|..+++.+|.+|.|+|+..++ .|............+++++|.+++.|.|||+|.|
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~n   80 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVN   80 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEEE
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEEC
Confidence            578899999999999999999998888878889999999998877 8887666666778999999999999999999999


Q ss_pred             CCCCCCCCCCCCCEEe
Q psy12426        488 KGGPGEPSKASAPVTC  503 (616)
Q Consensus       488 ~~G~g~~s~~~~~~~~  503 (616)
                      ..|.|++|..+..++.
T Consensus        81 ~~G~s~~s~~~~~vtv   96 (98)
T d1x5ya1          81 IAGRSEPATLLQPVTI   96 (98)
T ss_dssp             TTEECCCCCCSSCBCC
T ss_pred             CCcCCCCcCCCCCEEe
Confidence            9999999887665543

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.2e-16  Score=121.74  Aligned_cols=106  Identities=25%  Similarity=0.367  Sum_probs=87.7

Q ss_pred             CcCCCCccccCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCcc
Q psy12426        389 IGESLPLVCQSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANIT  466 (616)
Q Consensus       389 ~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~  466 (616)
                      .|.|.++  +..+.+.+....|++|.++.+...+.+++.|.|.+|..+++ .|.+|.|+|+..+.  .+...........
T Consensus         2 ~G~G~ps--s~~v~~~T~~~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g-~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~   78 (117)
T d1wfoa1           2 IGDGSPS--HPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNG-IILAYQITHRLNTTTANTATVEVLAPSAR   78 (117)
T ss_dssp             CCCCCCC--CCCSCCCCSCCCCCCCCCCEEEEECSSEEEEECCCCSCCCS-CCCEEEEEEEESSCCCSCCCEEEECTTCC
T ss_pred             ccCCCCC--CCCEEEECCCCCCcCCCCcEEEEecCCEEEEEEECCCCCCC-ceEEEeeeeeeccCCCceEeEEecCCceE
Confidence            5677665  34566667788999999999999999999999998876655 69999999988776  3444445567788


Q ss_pred             EEEcCCCCCCCeEEEEEEEEcCCCCCCCCCC
Q psy12426        467 ATSVPDLKEGEEYEFRVIAVNKGGPGEPSKA  497 (616)
Q Consensus       467 ~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~  497 (616)
                      .|+|.+|.|++.|.|+|+|.|..|.|++|..
T Consensus        79 ~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~  109 (117)
T d1wfoa1          79 QYTATGLKPESVYLFRITAQTRKGWGEAAEA  109 (117)
T ss_dssp             EEEEESCCSSSEEEEEEEEECSSCEEEEEEE
T ss_pred             EEEECCCCCCCEEEEEEEEECCCcCCCCcCC
Confidence            9999999999999999999999999988764

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=7.4e-15  Score=113.04  Aligned_cols=95  Identities=32%  Similarity=0.599  Sum_probs=80.6

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEe-EeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKA-CIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~-~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      .+|++|.++.+..++.+++.|+|.+ ..+++.+|.+|.|+|+..+.  .|... .........+++.+|.|++.|.|||+
T Consensus         9 ~pP~~P~~~~v~~~~~~sv~l~W~p-~~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~   87 (108)
T d1x4za1           9 SPPEAPDRPTISTASETSVYVTWIP-RGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVR   87 (108)
T ss_dssp             CCCCCCCCCEEEECCSSEEEEECCC-CCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEEE
T ss_pred             CCCccCCCCEEEEccCCEEEEEEEC-CCCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEEE
Confidence            5788999999999999999999985 45677789999999987665  56544 34566788999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCEEe
Q psy12426        485 AVNKGGPGEPSKASAPVTC  503 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~~~~  503 (616)
                      |+|..|.|++|.+++.+++
T Consensus        88 A~N~~G~s~~S~pS~p~~~  106 (108)
T d1x4za1          88 ALNMLGESEPSAPSRPYVV  106 (108)
T ss_dssp             EEETTEECCCCCCCCCEEC
T ss_pred             EECCCcCCCCCCCCCCEEe
Confidence            9999999999998876553

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-14  Score=110.44  Aligned_cols=94  Identities=31%  Similarity=0.501  Sum_probs=87.5

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      ..+.+..+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+......+.|.|.++...|+|.|+|.|.|..|....
T Consensus         5 ~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   84 (101)
T d2cqva1           5 QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA   84 (101)
T ss_dssp             CCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEEEC
T ss_pred             eeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEEEE
Confidence            45678899999999999999999999999999999998888998888888889999999999999999999999999999


Q ss_pred             eEEEEEecCCCCCC
Q psy12426        301 TAKVTVLDIPSPPE  314 (616)
Q Consensus       301 ~~~l~v~~~p~~p~  314 (616)
                      ++.|.|...|.+|.
T Consensus        85 ~~~l~V~~~P~pP~   98 (101)
T d2cqva1          85 QVNLTVVDKPDPPA   98 (101)
T ss_dssp             CEEEEEECSCSCCC
T ss_pred             EEEEEEEecCCCcC
Confidence            99999999998875

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.1e-16  Score=118.28  Aligned_cols=96  Identities=36%  Similarity=0.626  Sum_probs=81.2

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      +|++|.++.+..++.++|.|+|.+|..+++..|.+|.++++..+. .|............+++.+|.|++.|.|||+|+|
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~n   81 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKN   81 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEEC
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEEE
Confidence            678888999999999999999999888888889999999998776 6666555566788999999999999999999999


Q ss_pred             CCCC-CCCCCCCCCEEec
Q psy12426        488 KGGP-GEPSKASAPVTCK  504 (616)
Q Consensus       488 ~~G~-g~~s~~~~~~~~~  504 (616)
                      ..|. |++|..+..++++
T Consensus        82 ~~G~~s~~S~~s~~vt~~   99 (104)
T d1bpva_          82 AAGAISPPSEPSDAITCR   99 (104)
T ss_dssp             TTSCEEEEEEEEEEECSC
T ss_pred             CCCCCCCCcCCCCCEEeC
Confidence            9997 7777655554443

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.56  E-value=8.4e-15  Score=110.17  Aligned_cols=89  Identities=19%  Similarity=0.290  Sum_probs=76.2

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      .++.+|.++.+..++.+++.|.|.+|...++..|.+|.|+|+..+.  .|........+...+.|.+|.|++.|.|+|+|
T Consensus         5 ~P~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   84 (95)
T d2ibga1           5 DPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQS   84 (95)
T ss_dssp             CCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEE
Confidence            4455677889999999999999998776666779999999998765  67766666777889999999999999999999


Q ss_pred             EcCCCCCCCCC
Q psy12426        486 VNKGGPGEPSK  496 (616)
Q Consensus       486 ~n~~G~g~~s~  496 (616)
                      +|..|.|++|.
T Consensus        85 ~n~~G~s~~Ss   95 (95)
T d2ibga1          85 FSAASASEFSA   95 (95)
T ss_dssp             ECSSCBCCCCC
T ss_pred             EeCCccCCCCC
Confidence            99999999873

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.9e-14  Score=110.01  Aligned_cols=92  Identities=23%  Similarity=0.298  Sum_probs=76.6

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      ...|++|.++.+..++.+++.|+|.+|...+ ++|.+|.|+|+..+. .|....   ....+++|.+|.|++.|.|+|+|
T Consensus         8 ~~vP~~P~~l~v~~~s~~si~l~W~~P~~~~-g~i~~Y~v~~~~~~~~~~~~~~---~~~~~~~i~~L~p~t~Y~~~V~A   83 (103)
T d1x5ga1           8 VQLPGPAPNLRAYAASPTSITVTWETPVSGN-GEIQNYKLYYMEKGTDKEQDVD---VSSHSYTINGLKKYTEYSFRVVA   83 (103)
T ss_dssp             SSCCCCCSSCEEEEEETTEEEEECCCCSCCS-SCCSEEEEEEEETTCCCCCCEE---ECSSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCcccCCCcEEEEccCCEEEEEEECCcCCC-ccEEEEEEEEEeCCCceeEEEe---ccccEEecCCCCCCCEEEEEEEE
Confidence            3578899999999999999999999876554 479999999998876 444332   34678999999999999999999


Q ss_pred             EcCCCCCCCCCCCCCEE
Q psy12426        486 VNKGGPGEPSKASAPVT  502 (616)
Q Consensus       486 ~n~~G~g~~s~~~~~~~  502 (616)
                      .|..|.|++|......|
T Consensus        84 ~n~~G~g~~S~~v~v~T  100 (103)
T d1x5ga1          84 YNKHGPGVSTPDVAVRT  100 (103)
T ss_dssp             ECSSCCCCBCCCCCEEC
T ss_pred             EcCCcCcCCCCCEEEEc
Confidence            99999999988665544

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.5e-15  Score=113.92  Aligned_cols=95  Identities=34%  Similarity=0.598  Sum_probs=76.6

Q ss_pred             CCCCCCCCCEEE--EecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEe-EeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        408 GRPDRPGQPTVT--DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA-CIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       408 ~~p~~p~~~~~~--~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~-~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      ..|++|..+.+.  .++.+++.|+|.+|. +++++|.+|.|+|+..++.|... .........++|.+|.|++.|.|||+
T Consensus         9 ~~P~~P~~p~~~~~~~~~~sv~l~W~~P~-~~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~   87 (108)
T d1wf5a1           9 QLPHAPEHPVATLSTVERRAINLTWTKPF-DGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLC   87 (108)
T ss_dssp             CCCCCCSSCEEEECSSSTTEEEEECCCCC-CCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCEEEEEEE
T ss_pred             cCCCCCCCCEEEEEeccCCEEEEEEECCC-CCCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCCEEEEEEE
Confidence            456666665443  467889999999874 56778999999999887765544 34456678999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCEEe
Q psy12426        485 AVNKGGPGEPSKASAPVTC  503 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~~~~  503 (616)
                      |.|..|.|++|..+..++.
T Consensus        88 A~N~~G~s~~S~~~~~~t~  106 (108)
T d1wf5a1          88 AVNDVGKGQFSKDTERVSL  106 (108)
T ss_dssp             EEESSCEEEECCCCSCEEC
T ss_pred             EEcCCcCCCCcCCcCCEEC
Confidence            9999999999998877664

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.56  E-value=3.5e-15  Score=110.13  Aligned_cols=81  Identities=19%  Similarity=0.279  Sum_probs=69.0

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||++...+++.+.|.+|+++.|.|.+.|.|.|.|+|+|+|..|. .++|.-.                            
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~-~~~~~~~----------------------------   52 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLS-GGRATVT----------------------------   52 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECC-SSSEEEE----------------------------
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCc-cccEEEe----------------------------
Confidence            58888776677889999999999999999999999999999886 4554322                            


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                          ...|.|.++...|.|.|.|.|.|..|....
T Consensus        53 ----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~   82 (89)
T d1biha4          53 ----DSGLVIKGVKNGDKGYYGCRATNEHGDKYF   82 (89)
T ss_dssp             ----TTEEEESSCCSTTCEEEEEEEEETTEEEEE
T ss_pred             ----eeeEEECCCChhhCEEEEEEEEECCCEEEE
Confidence                346999999999999999999999996543

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.5e-14  Score=111.60  Aligned_cols=97  Identities=23%  Similarity=0.395  Sum_probs=78.5

Q ss_pred             ccCCCCCCCCCCCCEE-EEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEE
Q psy12426        403 AKDPFGRPDRPGQPTV-TDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYE  480 (616)
Q Consensus       403 ~~~~~~~p~~p~~~~~-~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~  480 (616)
                      +.+...+|++|.++.. ..++.+++.|+|.+|..+++.++..|.++++..+. .+... ........+.+.+|.|++.|.
T Consensus         4 ~~T~~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~   82 (107)
T d2crma1           4 FTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEM-IYSGATREHLCDRLNPGCFYR   82 (107)
T ss_dssp             CCSCCCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEE-EECSSCSEEEECSCCTTSCEE
T ss_pred             EECCCCCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEE-eecCCccEEEEeccCCCCEEE
Confidence            3455678888888654 45789999999998887878789999999987765 33322 334567899999999999999


Q ss_pred             EEEEEEcCCCCCCCCCCCCC
Q psy12426        481 FRVIAVNKGGPGEPSKASAP  500 (616)
Q Consensus       481 ~~v~a~n~~G~g~~s~~~~~  500 (616)
                      |||+|.|..|.|++|.....
T Consensus        83 ~rV~A~n~~G~s~~S~~v~v  102 (107)
T d2crma1          83 LRVYCISDGGQSAVSESLLV  102 (107)
T ss_dssp             EEEEEEETTEECCCCCCCCC
T ss_pred             EEEEEECCCcCcCCCCcEEE
Confidence            99999999999999986654

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=4.7e-15  Score=110.91  Aligned_cols=86  Identities=22%  Similarity=0.422  Sum_probs=76.3

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      |++|.++.+...+.+++.|.|.+|. +++.+|.+|.|+|+..++.|............++|.+|.|++.|.|+|+|.|..
T Consensus         1 P~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~I~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~~   79 (93)
T d2vkwa2           1 PSAPKLEGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQ   79 (93)
T ss_dssp             CCCCEEEEEECTTSSCEEEEEECCC-CTTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCCccCEeEEcCCCEEEEEeeCCC-CCcCceEEEEEEeeecCcceeeeeeccCCceEEEEeccccceEEEEEEEEEcCC
Confidence            6788888998899999999999874 677789999999999887766666677788999999999999999999999999


Q ss_pred             CCCCCCC
Q psy12426        490 GPGEPSK  496 (616)
Q Consensus       490 G~g~~s~  496 (616)
                      |.|+++.
T Consensus        80 G~s~ps~   86 (93)
T d2vkwa2          80 GKSKAAH   86 (93)
T ss_dssp             EECCCEE
T ss_pred             CCcCCEe
Confidence            9998774

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.7e-14  Score=113.04  Aligned_cols=96  Identities=34%  Similarity=0.537  Sum_probs=79.4

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      ..|++|.++.+..++.+++.|+|.+| .+++.+|.+|.|+|+..+.  .|..... ......|+|.+|.|++.|.|||+|
T Consensus        14 ~~P~pP~~~~v~~~~~~sv~l~W~p~-~~~~~~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~~v~~L~p~t~Y~frV~A   91 (117)
T d1uema_          14 DLPGPPSKPQVTDVTKNSVTLSWQPG-TPGTLPASAYIIEAFSQSVSNSWQTVAN-HVKTTLYTVRGLRPNTIYLFMVRA   91 (117)
T ss_dssp             CSCBCCCCCEEEEECSSCEEEECCCC-BCSSSCCCEEEEEEEETTTEEEEEEEEE-EECSSEEEECSCCTTCEEEEEEEE
T ss_pred             ccCcCCCCCEEEEccCCEEEEEEECC-CcCCCCeEEEEEEEeccCCceeeEEecc-ccccccceECCCCCCCEEEEEEEE
Confidence            67889999999999999999999965 4566689999999887765  4554432 234678999999999999999999


Q ss_pred             EcCCCCCCCCCCCCCEEecc
Q psy12426        486 VNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       486 ~n~~G~g~~s~~~~~~~~~~  505 (616)
                      +|..|.|++|..+..+++..
T Consensus        92 ~N~~G~s~~S~~s~~v~t~~  111 (117)
T d1uema_          92 INPQGLSDPSPMSDPVRTQD  111 (117)
T ss_dssp             EETTEEEEECCCCCCEECCC
T ss_pred             EeCCcCCCCcCCCcCEEeCC
Confidence            99999999998877665443

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.1e-15  Score=112.27  Aligned_cols=98  Identities=22%  Similarity=0.311  Sum_probs=80.7

Q ss_pred             ccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEE
Q psy12426        403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       403 ~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      +.+...+|++|.++++...+.+++.|+|.+|. +++.+|.+|.|+++..+..+.......+....+.+.+|.|++.|.||
T Consensus         4 f~T~~~~P~~P~~~~~~~~~~~sv~l~W~pp~-~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~fr   82 (105)
T d1x3da1           4 FTTLSCEPDIPNPPRIANRTKNSLTLQWKAPS-DNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFR   82 (105)
T ss_dssp             CCCCCSCCCCCCCCEEEEEETTEEEEECCCCC-CCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEE
T ss_pred             EECCCCCCcCCCCCEEEEccCCEEEEEEECCC-CCcCccEEEEEEEecCCCcceeEEEecCCccEEEecCCcCCcEEEEE
Confidence            34567889999999999999999999999875 45668999999998776633333344556789999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCE
Q psy12426        483 VIAVNKGGPGEPSKASAPV  501 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~~~  501 (616)
                      |+|.|..|.|++|......
T Consensus        83 V~A~N~~G~s~~S~~~~~~  101 (105)
T d1x3da1          83 LSARNDYGTSGFSEEVLYY  101 (105)
T ss_dssp             CCEEESSCBCCCCCCEEEE
T ss_pred             EEEECCCeEcCCCCcEEEE
Confidence            9999999999998765443

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.5e-15  Score=111.04  Aligned_cols=92  Identities=25%  Similarity=0.413  Sum_probs=76.3

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      |++|.++.+..++.+++.|+|.+|..+++..+..|.++++..+..+............++|.+|.|++.|.|||+|.|..
T Consensus         1 P~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~n~~   80 (96)
T d1x5xa1           1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSE   80 (96)
T ss_dssp             CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEECSS
T ss_pred             CccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEeecCCCCEEEECCCCCCCEEEEEEEEEcCC
Confidence            67888899999999999999999888888789999999987766332233344567899999999999999999999999


Q ss_pred             CCCCCCCCCCCE
Q psy12426        490 GPGEPSKASAPV  501 (616)
Q Consensus       490 G~g~~s~~~~~~  501 (616)
                      |.|++|......
T Consensus        81 G~s~~S~~~~~~   92 (96)
T d1x5xa1          81 GKSNPSEVVEFT   92 (96)
T ss_dssp             CEEEECCCEEEE
T ss_pred             cEeCCCCCEEEE
Confidence            999988765543

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.54  E-value=1.5e-14  Score=110.04  Aligned_cols=94  Identities=30%  Similarity=0.494  Sum_probs=76.5

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-C-ceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-P-WEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~-~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      ++|++|.++.+. ...+++.|+|.+|. +++++|.+|.|+|+..+. . +...........++++.+|.|++.|.|||+|
T Consensus         4 dvP~~P~~~~v~-~~~~sv~lsW~pp~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A   81 (100)
T d1cfba1           4 DVPNAPKLTGIT-CQADKAEIHWEQQG-DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIA   81 (100)
T ss_dssp             CCCCCCEEEEEE-ECSSEEEEEEECCC-CTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEEEEE
T ss_pred             cCCCcCcCcEEE-EcCCEEEEEEcCCc-ccccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEEEEE
Confidence            679999999876 56789999999764 566789999999998765 3 3343444345667889999999999999999


Q ss_pred             EcCCCCCCCCCCCCCEEe
Q psy12426        486 VNKGGPGEPSKASAPVTC  503 (616)
Q Consensus       486 ~n~~G~g~~s~~~~~~~~  503 (616)
                      .|..|.|++|.++..+++
T Consensus        82 ~n~~G~g~~S~~s~~vtT   99 (100)
T d1cfba1          82 FNKIGASPPSAHSDSCTT   99 (100)
T ss_dssp             EETTEECCCCCCCCCEEE
T ss_pred             EeCCcCCCCcCCCcCEEe
Confidence            999999999998887765

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.2e-14  Score=111.87  Aligned_cols=94  Identities=20%  Similarity=0.207  Sum_probs=81.0

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      ...|++|.++.+..++.+++.|+|.+|..+.++.+.+|.|+|+..+. .+............++|.+|.|++.|.|||+|
T Consensus         8 ~~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A   87 (107)
T d1x5fa1           8 GPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMA   87 (107)
T ss_dssp             CCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEE
Confidence            46789999999999999999999998876667789999999998776 55555566677889999999999999999999


Q ss_pred             EcCCCCCCCCCCCCC
Q psy12426        486 VNKGGPGEPSKASAP  500 (616)
Q Consensus       486 ~n~~G~g~~s~~~~~  500 (616)
                      .|..|.|++|....+
T Consensus        88 ~n~~G~g~~S~~i~v  102 (107)
T d1x5fa1          88 QNKHGSGESSAPLRV  102 (107)
T ss_dssp             ECSSCEEEECCCEEE
T ss_pred             EeCCCCcCCCCCEEE
Confidence            999999988875443

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.8e-15  Score=111.49  Aligned_cols=94  Identities=28%  Similarity=0.323  Sum_probs=76.7

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      ++|++|..+++...+.+++.|.|.+|...++ .|.+|+|+|+..++.+............++|.+|.|++.|.|+|+|.|
T Consensus         2 a~P~~p~~~~~~~~s~~si~v~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n   80 (98)
T d1x5la1           2 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNG-IILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRART   80 (98)
T ss_dssp             CCCCCCCCEECSCBCSSCEEEEECCCSCCCS-CCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEECEEEEE
T ss_pred             cCCCCCCceEEEeccCCEEEEEEECCCCCCC-CEEEEEEEeecccccceeeEEecCCceEEEECCCCCCCEEEEEEEEEc
Confidence            5788899999999999999999998866544 699999999987652222233445678999999999999999999999


Q ss_pred             CCCCCCCCCCCCCEE
Q psy12426        488 KGGPGEPSKASAPVT  502 (616)
Q Consensus       488 ~~G~g~~s~~~~~~~  502 (616)
                      ..|.|++|....+.|
T Consensus        81 ~~G~g~~S~~v~~~T   95 (98)
T d1x5la1          81 SAGCGRFSQAMEVET   95 (98)
T ss_dssp             TTEECCCCCCEEEEC
T ss_pred             CCCCcCCCCCEEEEc
Confidence            999999998665443

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3.1e-14  Score=106.02  Aligned_cols=90  Identities=14%  Similarity=0.158  Sum_probs=74.0

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      +|.+|.+|++...+.++|.|+|.+|....++.+.+|.|++...++.+....    ...+++|.+|.|++.|.|||+|.|.
T Consensus         2 ~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~~~~~~----~~t~~~i~~L~p~t~Y~~rV~A~n~   77 (94)
T d1x5aa1           2 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMV----LEPRVLLTKLQPDTTYIVRVRTLTP   77 (94)
T ss_dssp             CCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCEEEEEE----SSSEEEEESCCSSCEEEEEEEEECS
T ss_pred             cCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCceEEEee----ccCEEEECCCCCCCEEEEEEEEEcC
Confidence            678899999999999999999998765555567789999988775333221    3578999999999999999999999


Q ss_pred             CCCCCCCCCCCCEE
Q psy12426        489 GGPGEPSKASAPVT  502 (616)
Q Consensus       489 ~G~g~~s~~~~~~~  502 (616)
                      .|.|++|....+.|
T Consensus        78 ~G~g~~S~~~~~~T   91 (94)
T d1x5aa1          78 LGPGPFSPDHEFRT   91 (94)
T ss_dssp             SSCCCCCCCEEEEC
T ss_pred             CcCcCCCCCEEEEe
Confidence            99999987655444

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.52  E-value=1.4e-14  Score=106.73  Aligned_cols=80  Identities=23%  Similarity=0.336  Sum_probs=68.7

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.+. +.|.++.+.+|+.+.|.|.+.|.|.|.|+|+|||.+|....+|.-.                             
T Consensus         2 P~f~-~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~-----------------------------   51 (89)
T d1cs6a4           2 PDWL-DVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS-----------------------------   51 (89)
T ss_dssp             EEEE-ECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE-----------------------------
T ss_pred             CCeE-EECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee-----------------------------
Confidence            6665 4599999999999999999999999999999999998865555322                             


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                         ...|.|.++...|.|.|+|.|.|..|....
T Consensus        52 ---~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   81 (89)
T d1cs6a4          52 ---GGELRFSKLVLEDSGMYQCVAENKHGTVYA   81 (89)
T ss_dssp             ---TTEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ---eeeEEEEeecccCCEEEEEEEEeCCCEEEE
Confidence               457999999999999999999999996543

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.9e-14  Score=110.77  Aligned_cols=95  Identities=17%  Similarity=0.251  Sum_probs=79.2

Q ss_pred             EccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEE
Q psy12426        402 TAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYE  480 (616)
Q Consensus       402 ~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~  480 (616)
                      .+++....|++|.++++..++.+++.|+|.+|...++ .|.+|.|+|+..+. .............+|+|.+|.|++.|.
T Consensus         3 ~v~T~e~vP~~p~~l~~~~~~~~sv~l~W~~P~~~ng-~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   81 (106)
T d1wfna1           3 LVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYT   81 (106)
T ss_dssp             SCCSSCCSCCCCSCCEEESCCSSEEEEECCCCTTCCS-CCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEE
T ss_pred             EEEcCCCCCcCCCCcEEEEecCCEEEEEEECCCCCCC-cEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEE
Confidence            3456678899999999999999999999998876655 69999999988775 333334456667899999999999999


Q ss_pred             EEEEEEcCCCCCCCCCC
Q psy12426        481 FRVIAVNKGGPGEPSKA  497 (616)
Q Consensus       481 ~~v~a~n~~G~g~~s~~  497 (616)
                      |+|+|.|..|.|++|..
T Consensus        82 ~~V~A~n~~G~g~~s~~   98 (106)
T d1wfna1          82 IEVAAMTSKGQGQVSAS   98 (106)
T ss_dssp             EEEEEECSSCEEEEEEE
T ss_pred             EEEEEECCCCCcCCcCC
Confidence            99999999999987753

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.8e-14  Score=106.35  Aligned_cols=89  Identities=30%  Similarity=0.412  Sum_probs=70.4

Q ss_pred             CCCCCCEEE-EecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        411 DRPGQPTVT-DWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       411 ~~p~~~~~~-~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      +++....+. ....++|.|+|.+|..+++.+|.+|.|+++..+. .|.....  +...+++|.+|.|++.|.|||+|.|.
T Consensus         3 ~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~~v~~L~p~t~Y~frV~A~N~   80 (97)
T d2crza1           3 GPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQ--GSEVECTVSSLLPGKTYSFRLRAANK   80 (97)
T ss_dssp             CCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEE--ESCSEEEEESCCTTCEEEECCEEECS
T ss_pred             CcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeec--CCceEEEEcCCCCCEEEEEEEEEecC
Confidence            333333433 3467899999999888888789999999998776 6665543  45678999999999999999999999


Q ss_pred             CCCCCCCCCCCCE
Q psy12426        489 GGPGEPSKASAPV  501 (616)
Q Consensus       489 ~G~g~~s~~~~~~  501 (616)
                      .|.|++|......
T Consensus        81 ~G~s~~S~~~~~~   93 (97)
T d2crza1          81 MGFGPFSEKCDIT   93 (97)
T ss_dssp             SCBCCCCCCEEEE
T ss_pred             CeEcCCcCCCeEE
Confidence            9999998765443

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.49  E-value=5.2e-14  Score=108.28  Aligned_cols=92  Identities=27%  Similarity=0.440  Sum_probs=70.7

Q ss_pred             CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEee-----------cCCccEEEcCCCCCCCe
Q psy12426        412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIV-----------PANITATSVPDLKEGEE  478 (616)
Q Consensus       412 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~-----------~~~~~~~~l~~L~p~t~  478 (616)
                      ||..+.+..++.+++.|+|.+|. +++.+|++|.|+|+..+.  .|......           ......++|.+|.|++.
T Consensus         2 PP~~p~v~~~~~~sv~l~W~~P~-~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   80 (107)
T d2ic2a1           2 PPTPPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHT   80 (107)
T ss_dssp             CCCCCEEEECC---EEEEEEEEC-CSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEE
T ss_pred             cCcCCEEEEEECCEEEEEEEeCc-cccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcE
Confidence            45566788899999999999875 567789999999987664  66544211           22356899999999999


Q ss_pred             EEEEEEEEcCCCCCCCCCCCCCEEec
Q psy12426        479 YEFRVIAVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       479 Y~~~v~a~n~~G~g~~s~~~~~~~~~  504 (616)
                      |.|||+|.|..|.|++|..+..+.+.
T Consensus        81 Y~frV~A~N~~G~s~~S~~s~~~~~~  106 (107)
T d2ic2a1          81 YRFRILAVYSNNDNKESNTSAKFYLQ  106 (107)
T ss_dssp             EEEEEEEEETTSCEEECCCCCCEEEC
T ss_pred             EEEEEEEEcCCCCCCCCCCCCCEEcC
Confidence            99999999999999999988877653

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.3e-14  Score=110.02  Aligned_cols=98  Identities=27%  Similarity=0.412  Sum_probs=80.1

Q ss_pred             CCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC----CceEe--EeecCCccEEEcCCCCCCCe
Q psy12426        405 DPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWEKA--CIVPANITATSVPDLKEGEE  478 (616)
Q Consensus       405 ~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~----~~~~~--~~~~~~~~~~~l~~L~p~t~  478 (616)
                      .+...|++|.++++..++.+++.|+|.+|. +++.++.+|.|+|+....    .|...  .........+.|.+|.|++.
T Consensus         6 ~p~~~P~~P~~~~~~~~~~~sv~l~W~pp~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~   84 (111)
T d1wisa1           6 VPPELPGPPTNLGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTC   84 (111)
T ss_dssp             CCCCCCCCCEEEEEESCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSE
T ss_pred             CCCCCCcCCCCCEEEEcCCCEEEEEEeCCC-CCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCE
Confidence            345778999999999899999999999664 566789999999987654    23332  33456678999999999999


Q ss_pred             EEEEEEEEcCCCCCCCCCCCCCEEe
Q psy12426        479 YEFRVIAVNKGGPGEPSKASAPVTC  503 (616)
Q Consensus       479 Y~~~v~a~n~~G~g~~s~~~~~~~~  503 (616)
                      |.|||+|.|..|.|++|.++..+++
T Consensus        85 Y~frV~A~N~~G~s~~S~~s~~~~T  109 (111)
T d1wisa1          85 YSFRMRQVNIVGTSPPSQPSRKIQT  109 (111)
T ss_dssp             ECCCCEEECSSCBCCCCCCCCCEEC
T ss_pred             EEEEEEEEcCCcCCCCcCCCCCEEc
Confidence            9999999999999999998776543

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4e-14  Score=107.45  Aligned_cols=85  Identities=16%  Similarity=0.183  Sum_probs=73.0

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |+|. +.|+++.+.+|+.+.|.|.+.|.|.|.|+|+|||+.|...++|...-                            
T Consensus         1 P~~~-~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~----------------------------   51 (101)
T d2cqva1           1 PQII-QFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN----------------------------   51 (101)
T ss_dssp             CEES-CCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE----------------------------
T ss_pred             CeEE-eeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEE----------------------------
Confidence            6666 46999999999999999999999999999999999998777776542                            


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ......|.|.++...|+|.|+|.|.|..|....+
T Consensus        52 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   85 (101)
T d2cqva1          52 SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQ   85 (101)
T ss_dssp             CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECC
T ss_pred             ecceeEEEEeeCCcccCEEEEEEEEECCCEEEEE
Confidence            1124579999999999999999999999987666

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.49  E-value=2e-14  Score=107.30  Aligned_cols=86  Identities=23%  Similarity=0.316  Sum_probs=72.0

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      +|+|. .+++++.+.+|+++.|.|.+.|+|.|.++|+|+++.+..+..|.-..                           
T Consensus         2 ~P~i~-~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~---------------------------   53 (93)
T d1wiua_           2 KPKIL-TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA---------------------------   53 (93)
T ss_dssp             CCEEC-CCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEE---------------------------
T ss_pred             CCeEE-eCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecc---------------------------
Confidence            68887 45899999999999999999999999999999999988655553332                           


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                       ......|.|.++...|.|.|.|.|.|..|.....
T Consensus        54 -~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   87 (93)
T d1wiua_          54 -KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAI   87 (93)
T ss_dssp             -ETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEE
T ss_pred             -cccceeeccccccccccEEEEEEEEECCCEEEEE
Confidence             1124579999999999999999999999976443

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.3e-14  Score=107.43  Aligned_cols=91  Identities=25%  Similarity=0.354  Sum_probs=72.8

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEee---cCCccEEEcCCCCCCCeEEEEEE
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIV---PANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~---~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      .|++|..+.+ ....+++.|.|.+|..+++.+|.+|.|+|+..++ .|......   ......++|.+|.|++.|.|||+
T Consensus         2 vP~~P~~~~~-~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~   80 (101)
T d2haza1           2 TPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLA   80 (101)
T ss_dssp             CCCCCEEEEE-EECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEEE
T ss_pred             cCcCCccCEE-EeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEEE
Confidence            5777754444 4677899999999888888889999999998776 56554322   23356899999999999999999


Q ss_pred             EEcCCCCCCCCCCCCC
Q psy12426        485 AVNKGGPGEPSKASAP  500 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~  500 (616)
                      |.|..|.|++|....+
T Consensus        81 A~N~~G~g~~S~~~~~   96 (101)
T d2haza1          81 ALNGKGLGEISAASEF   96 (101)
T ss_dssp             EEETTEECCCCCCEEE
T ss_pred             EEeCCcCcCCCCceeE
Confidence            9999999999986544

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.49  E-value=2.4e-14  Score=108.99  Aligned_cols=87  Identities=18%  Similarity=0.328  Sum_probs=72.5

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      +|.|. ..|+++.+.+|+.+.|.|.+.|.|.|.|.|+|||+.|...+.|......                         
T Consensus         8 ~P~f~-~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~-------------------------   61 (102)
T d1fhga_           8 KPYFT-KTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE-------------------------   61 (102)
T ss_dssp             EEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECT-------------------------
T ss_pred             CCeEE-cCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEec-------------------------
Confidence            46665 5689999999999999999999999999999999999877777654211                         


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                        ....+|.|.++...|.|.|+|.|.|..|....+
T Consensus        62 --~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   94 (102)
T d1fhga_          62 --EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT   94 (102)
T ss_dssp             --TCEEEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             --CceeeeEecCCCHHhCEEEEEEEEECCcEEEEE
Confidence              124579999999999999999999999976544

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=9.2e-14  Score=106.51  Aligned_cols=94  Identities=17%  Similarity=0.226  Sum_probs=74.4

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      ..|..+.+...+.+++.|+|++|...++ .+.+|.|+|+...+  .|........+...++|.+|.|++.|.|||+|+|.
T Consensus         9 ~~P~~p~~~~~~~~~i~v~W~pp~~~~~-~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~   87 (106)
T d1cd9b2           9 ALDIGPDVVSHQPGCLWLSWKPWKPSEY-MEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRS   87 (106)
T ss_dssp             ECCC-------CCSCEEEEEECCGGGTT-SCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEES
T ss_pred             CCCCCCeEecCCCCEEEEEEcCcccCCc-cceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEeC
Confidence            4566677778899999999998765544 58999999987544  78887777777899999999999999999999999


Q ss_pred             CCCCCCCCCCCCEEecc
Q psy12426        489 GGPGEPSKASAPVTCKP  505 (616)
Q Consensus       489 ~G~g~~s~~~~~~~~~~  505 (616)
                      .|.|.+|..+..++.++
T Consensus        88 ~g~g~wS~wS~~~~~~~  104 (106)
T d1cd9b2          88 SLPGFWSPWSPGLQLRP  104 (106)
T ss_dssp             SSCCCCCCCCCCEEECC
T ss_pred             CCCCCCcCCCCCeEecC
Confidence            99999999998887765

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=106.04  Aligned_cols=94  Identities=16%  Similarity=0.227  Sum_probs=73.9

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      ..|..+.+...+.+++.|+|.+|...++ .+.+|.|+|+...+  .|.......+....++|.+|.|++.|.|||+|.|.
T Consensus         8 ~~P~~p~~~~~~~~~v~l~W~pp~~~~~-~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~   86 (105)
T d2d9qb2           8 TMDPSPEAAPPQAGCLQLSWEPWQPGLH-INQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRW   86 (105)
T ss_dssp             ECCC-------CCSCEEEEEECCGGGTT-SCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEEC
T ss_pred             CCCCCCEeecCCCCeEEEEEcCCCCCCc-eeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEEeC
Confidence            4566777888899999999998765544 68899999997654  77777777778889999999999999999999999


Q ss_pred             CCCCCCCCCCCCEEecc
Q psy12426        489 GGPGEPSKASAPVTCKP  505 (616)
Q Consensus       489 ~G~g~~s~~~~~~~~~~  505 (616)
                      .|.|.+|..+..++..+
T Consensus        87 ~g~G~~S~wS~~~~~~t  103 (105)
T d2d9qb2          87 PLPGHWSDWSPSLELRT  103 (105)
T ss_dssp             SSCCCCCCCCCCEEECC
T ss_pred             CCCCCCcCCCCCEEEeC
Confidence            99999999888777654

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.48  E-value=4.9e-14  Score=106.14  Aligned_cols=95  Identities=22%  Similarity=0.296  Sum_probs=83.2

Q ss_pred             CceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       216 P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      |.|. ..+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+..+.++.+...+....|.|.++...|.|.|+|.|.|..
T Consensus         2 P~f~-~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           2 PRFI-VKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             CEEE-ECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CEEE-EeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            5553 345778899999999999999999999999999999988888887777788899999999999999999999999


Q ss_pred             CCceeeEEEEEecCCC
Q psy12426        296 GTDKGTAKVTVLDIPS  311 (616)
Q Consensus       296 g~~~~~~~l~v~~~p~  311 (616)
                      |.....+.|.|...+.
T Consensus        81 G~~~~~~~l~V~~~~~   96 (97)
T d1koaa1          81 GTKEEIVFLNVTRHSE   96 (97)
T ss_dssp             EEEEEEECCEEECSCC
T ss_pred             CEEEEEEEEEEeecCC
Confidence            9988888888876543

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.48  E-value=9.9e-15  Score=110.03  Aligned_cols=85  Identities=19%  Similarity=0.237  Sum_probs=70.7

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |++.. .|+++.+.+|+.+.|.|.+.|.|.|.|+|+|||+.|..+..|.-..                            
T Consensus         2 P~f~~-~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~----------------------------   52 (97)
T d1koaa1           2 PRFIV-KPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY----------------------------   52 (97)
T ss_dssp             CEEEE-CCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCC----------------------------
T ss_pred             CEEEE-eCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEe----------------------------
Confidence            67764 4899999999999999999999999999999999998666653321                            


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ......|.|.++...|.|.|+|.|.|..|.....
T Consensus        53 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   86 (97)
T d1koaa1          53 NGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEI   86 (97)
T ss_dssp             STTEEEEEESCCCSGGGSCEEEEEEETTEEEEEE
T ss_pred             cCCeeEEEeCCCceecCEEEEEEEEECCCEEEEE
Confidence            2234579999999999999999999999976544

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.47  E-value=2.7e-14  Score=105.95  Aligned_cols=80  Identities=19%  Similarity=0.268  Sum_probs=66.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|....|+++.+.+|+.++|.|.+.|+|.|.|+|+|++..+..  .                                
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~--~--------------------------------   49 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--K--------------------------------   49 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC--C--------------------------------
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce--E--------------------------------
Confidence            688877778999999999999999999999999999998764431  0                                


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                      .......|.|.++...|.|.|.|.|.|..|....
T Consensus        50 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   83 (91)
T d1cs6a3          50 WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY   83 (91)
T ss_dssp             CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             eeeeeeEEEeCCCCccCCEEEEEEEEECCCEEEE
Confidence            0223568999999999999999999999996543

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.47  E-value=4.9e-14  Score=106.38  Aligned_cols=87  Identities=18%  Similarity=0.296  Sum_probs=70.7

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||+|. ..++++.+.+|+.+.|.|.+.|+|.|.|+|+||+.+|..++.+.-.-.                          
T Consensus         4 aP~f~-~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~--------------------------   56 (98)
T d1g1ca_           4 APKIF-ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWP--------------------------   56 (98)
T ss_dssp             EEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE--------------------------
T ss_pred             CCeEe-cCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEec--------------------------
Confidence            57776 458999999999999999999999999999999999986555332210                          


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                       ......|.|.++...|.|.|+|.|.|..|.....
T Consensus        57 -~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   90 (98)
T d1g1ca_          57 -EDNVCELVIRDVTGEDSASIMVKAINIAGETSSH   90 (98)
T ss_dssp             -ETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             -cceEEEEEeccCccccCEEEEEEEEECCcEEEEE
Confidence             1124579999999999999999999999976443

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.47  E-value=2.1e-13  Score=104.43  Aligned_cols=90  Identities=18%  Similarity=0.285  Sum_probs=76.3

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      ++.+|.++.+...+.+++.|+|+++. ...++++.+|.|+|+..+.  .|............++|.+|.|++.|.|+|+|
T Consensus         4 P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   83 (105)
T d1cfba2           4 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVA   83 (105)
T ss_dssp             CSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEE
T ss_pred             CCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEEE
Confidence            44578899999999999999999754 4555689999999988765  66666666777889999999999999999999


Q ss_pred             EcCCCCCCCCCCC
Q psy12426        486 VNKGGPGEPSKAS  498 (616)
Q Consensus       486 ~n~~G~g~~s~~~  498 (616)
                      .|..|.|++|...
T Consensus        84 ~N~~G~gp~S~~~   96 (105)
T d1cfba2          84 INDRGESNVAAEE   96 (105)
T ss_dssp             EETTEECSSCCCC
T ss_pred             EeCCcCCCCCCCc
Confidence            9999999988654

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2e-14  Score=113.24  Aligned_cols=103  Identities=19%  Similarity=0.335  Sum_probs=81.7

Q ss_pred             EccCCCCCCC-CCCCCEEEEecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCe
Q psy12426        402 TAKDPFGRPD-RPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEE  478 (616)
Q Consensus       402 ~~~~~~~~p~-~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~  478 (616)
                      .+++....|. +|.++.+...+.+++.|+|.+|. ...++.|.+|.|+|+..+. .+.......+....+.|.+|.|++.
T Consensus         3 ~v~T~~~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   82 (119)
T d1x5ha1           3 AVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTE   82 (119)
T ss_dssp             CCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCE
T ss_pred             EEEcCCCCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCE
Confidence            3455566675 68899999999999999999875 3344579999999988775 4444445667788999999999999


Q ss_pred             EEEEEEEEcCCCCCCCCCCCCCEEec
Q psy12426        479 YEFRVIAVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       479 Y~~~v~a~n~~G~g~~s~~~~~~~~~  504 (616)
                      |.|+|+|.|..|.|++|......|..
T Consensus        83 Y~~~V~A~n~~G~G~~S~~~~~~T~~  108 (119)
T d1x5ha1          83 YNFRVAALTINGTGPATDWLSAETFE  108 (119)
T ss_dssp             EEEECEEEETTEEEEECCCEEEECCS
T ss_pred             EEEEEEEEcCCcCCCCCCCEEEEeCC
Confidence            99999999999999988766554443

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.7e-13  Score=102.41  Aligned_cols=87  Identities=23%  Similarity=0.317  Sum_probs=71.9

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      |++|.++.+..++.+++.|+|.+|... +.++.+|.|+|+..++.+....  ......++|.+|.|++.|.|+|+|.|..
T Consensus         1 P~~P~~~~v~~~s~~si~l~W~~p~~~-~~~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   77 (93)
T d1x4xa1           1 PDQCKPPQVTCRSATCAQVNWEVPLSN-GTDVTEYRLEWGGVEGSMQICY--CGPGLSYEIKGLSPATTYYCRVQALSVV   77 (93)
T ss_dssp             CCCCCCCCCEEEETTEEEEECCCCSCS-SSCCCEEEEEEESSTTSCCEEE--EESCSEEEEESCCSSCEEEEEEEEECSS
T ss_pred             CcCCCCCEEEEeCCCeEEEEEEecccC-CCeeEEEEEEEccCCCcceEee--cCCccEEEEcccceeeEEEEEEEEEECC
Confidence            667888888889999999999987654 4579999999998776443332  3457789999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy12426        490 GPGEPSKASA  499 (616)
Q Consensus       490 G~g~~s~~~~  499 (616)
                      |.|++|....
T Consensus        78 G~s~~S~~~~   87 (93)
T d1x4xa1          78 GAGPFSEVVA   87 (93)
T ss_dssp             CCCCBCCCEE
T ss_pred             cCcCCCCcEE
Confidence            9999986543

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6.4e-14  Score=105.45  Aligned_cols=91  Identities=20%  Similarity=0.251  Sum_probs=74.0

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      |++|..+++...+.++|.|.|.+|...++ .|.+|.++|+..+. .+... ........++|.+|.|++.|.|+|+|.|.
T Consensus         1 P~~~~~l~~~~~t~~si~l~W~~p~~~~g-~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   78 (95)
T d2djsa1           1 PSTVPIMHQVSATMRSITLSWPQPEQPNG-IILDYEIRYYEKEHNEFNSS-MARSQTNTARIDGLRPGMVYVVQVRARTV   78 (95)
T ss_dssp             CCCCSCCEEEEECSSEEEEECCCCSCCSS-CEEEEEEEEEETTSCSTTCE-EEEESSSEEEEESCCTTCEEEEEEEEEES
T ss_pred             CCCCCccEEEeecCCEEEEEEEECCCCCc-ceEEeeeeeeeeccCcceeE-eecCCccEEEEeecCCccEEEEEEEEEcC
Confidence            56777899999999999999998876555 79999999998775 33322 22345779999999999999999999999


Q ss_pred             CCCCCCCCCCCCEE
Q psy12426        489 GGPGEPSKASAPVT  502 (616)
Q Consensus       489 ~G~g~~s~~~~~~~  502 (616)
                      .|.|++|....+.|
T Consensus        79 ~G~g~~S~~~~~~T   92 (95)
T d2djsa1          79 AGYGKFSGKMCFQT   92 (95)
T ss_dssp             SCEEEECCCEEEEC
T ss_pred             CCCCCCCCCEEEEe
Confidence            99999988765433

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.1e-13  Score=105.78  Aligned_cols=88  Identities=22%  Similarity=0.351  Sum_probs=75.1

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC------CceEeEeecCCccEEEcCCCCCCCeEEEE
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG------PWEKACIVPANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~------~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      .|++|.++++..++.+++.|+|.+|...+ +++.+|.|+|+....      .|...........+++|.+|.|++.|.|+
T Consensus         2 ~P~~P~~~~~~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~   80 (103)
T d1qg3a2           2 VPSEPGRLAFNVVSSTVTQLSWAEPAETN-GEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYT   80 (103)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCS-SCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEEEE
T ss_pred             cCccCCCcEEEEecCCEEEEEEEECccCC-CCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEEEE
Confidence            68899999999999999999999876544 579999999987653      45555556677889999999999999999


Q ss_pred             EEEEcCCCCCCCCCC
Q psy12426        483 VIAVNKGGPGEPSKA  497 (616)
Q Consensus       483 v~a~n~~G~g~~s~~  497 (616)
                      |+|.|..|.|+++..
T Consensus        81 V~A~n~~G~g~~s~~   95 (103)
T d1qg3a2          81 VKARNGAGWGPEREA   95 (103)
T ss_dssp             EEEEETTEECCCEEE
T ss_pred             EEEEcCCccCCCccc
Confidence            999999999987753

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.45  E-value=2.8e-13  Score=99.59  Aligned_cols=87  Identities=26%  Similarity=0.462  Sum_probs=75.9

Q ss_pred             CceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       216 P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      |.| ...+.+..+..|+++.|.|.+.|.|.|.++|++++..+..+.++.+...    .|.|.++...|.|.|+|.|.|..
T Consensus         2 P~f-~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~----~L~i~~v~~~D~G~Y~C~a~N~~   76 (89)
T d1cs6a4           2 PDW-LDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKH   76 (89)
T ss_dssp             EEE-EECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETT----EEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCe-EEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeee----eEEEEeecccCCEEEEEEEEeCC
Confidence            445 3456788999999999999999999999999999999988887776532    89999999999999999999999


Q ss_pred             CCceeeEEEEEe
Q psy12426        296 GTDKGTAKVTVL  307 (616)
Q Consensus       296 g~~~~~~~l~v~  307 (616)
                      |....++.|.|.
T Consensus        77 G~~~~~~~l~V~   88 (89)
T d1cs6a4          77 GTVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEE
Confidence            988888888775

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.45  E-value=1.5e-13  Score=102.46  Aligned_cols=92  Identities=30%  Similarity=0.467  Sum_probs=82.1

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +|.|. ..+.++.+..|+++.|.|.+.|.|.|.+.|++++..+..+.++.+...+....|.|.+++..|.|.|+|.|.|.
T Consensus         2 ~P~i~-~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           2 KPKIL-TASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEEC-CCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEE-eCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            46663 44678999999999999999999999999999999998888888888888889999999999999999999999


Q ss_pred             CCCceeeEEEEEe
Q psy12426        295 WGTDKGTAKVTVL  307 (616)
Q Consensus       295 ~g~~~~~~~l~v~  307 (616)
                      .|.....+.|.|+
T Consensus        81 ~G~~~~~~~l~V~   93 (93)
T d1wiua_          81 LGEDEAIFEVIVQ   93 (93)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEC
Confidence            9998888887763

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.45  E-value=4.3e-14  Score=104.95  Aligned_cols=81  Identities=19%  Similarity=0.328  Sum_probs=68.6

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      ..|+++.|.+|+.+.|.|.+.|.|.|.|+|+|+|..|...+.+.-..                            .....
T Consensus         4 ~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~----------------------------~~~~~   55 (91)
T d1tnna_           4 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT----------------------------TKYKS   55 (91)
T ss_dssp             BCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEE----------------------------CSSEE
T ss_pred             eCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeee----------------------------eccee
Confidence            46899999999999999999999999999999999988655554332                            22356


Q ss_pred             ceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.++...|.|.|+|.|.|..|.....
T Consensus        56 ~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   84 (91)
T d1tnna_          56 TFEISSVQASDEGNYSVVVENSEGKQEAE   84 (91)
T ss_dssp             EEECSSCCSCCCEEEEEECBCSSCBCCEE
T ss_pred             EEeecCCCHHHCEEEEEEEEECCCEEEEE
Confidence            89999999999999999999999976543

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.44  E-value=5.7e-13  Score=101.21  Aligned_cols=93  Identities=29%  Similarity=0.436  Sum_probs=81.5

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec-CCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-DKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      +|.| ...+.++.+..|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+... .....|.|.++...|.|.|+|.|.|
T Consensus         8 ~P~f-~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           8 KPYF-TKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEE-EECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeE-EcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            4666 4456788999999999999999999999999999999988888887654 4467899999999999999999999


Q ss_pred             CCCCceeeEEEEEec
Q psy12426        294 SWGTDKGTAKVTVLD  308 (616)
Q Consensus       294 ~~g~~~~~~~l~v~~  308 (616)
                      ..|....++.|.|..
T Consensus        87 ~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          87 SLGEATCTAELLVET  101 (102)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999998888888764

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.43  E-value=5.9e-13  Score=100.26  Aligned_cols=94  Identities=27%  Similarity=0.370  Sum_probs=80.4

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEE-EecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKI-VNDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      .+|.|. ..+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.+... ...++...|.|.++...|.|.|+|.|.
T Consensus         3 eaP~f~-~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   81 (98)
T d1g1ca_           3 EAPKIF-ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   81 (98)
T ss_dssp             EEEEEE-ECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCeEe-cCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence            456774 445788999999999999999999999999999999987766554 344567799999999999999999999


Q ss_pred             cCCCCceeeEEEEEec
Q psy12426        293 NSWGTDKGTAKVTVLD  308 (616)
Q Consensus       293 n~~g~~~~~~~l~v~~  308 (616)
                      |..|.....+.|.|..
T Consensus        82 N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          82 NIAGETSSHAFLLVQA   97 (98)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             ECCcEEEEEEEEEEEE
Confidence            9999988888888764

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.6e-13  Score=101.13  Aligned_cols=96  Identities=19%  Similarity=0.222  Sum_probs=79.2

Q ss_pred             CCCCCCCCEEEEe--cCCeEEEEecCCCC-CCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        409 RPDRPGQPTVTDW--GKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       409 ~p~~p~~~~~~~~--~~~~v~l~W~~p~~-~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      .|++|.++.+..+  ..+.+.|+|++|.. +.+..+..|+|+|+..+. .|.... .......++|.+|.|++.|.|||+
T Consensus         1 kP~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~rVr   79 (104)
T d1n26a3           1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWM-VKDLQHHCVIHDAWSGLRHVVQLR   79 (104)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEE-CGGGCSEEEESSCCTTCCEEEEEE
T ss_pred             CCcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeec-cccceEEEEECCCCCCCEEEEEEE
Confidence            4889999998876  45689999998763 556678999999998877 776654 446678999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCEEecc
Q psy12426        485 AVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      |.|..|.|.+|..+..+...+
T Consensus        80 a~n~~g~g~wSewS~~~~~~~  100 (104)
T d1n26a3          80 AQEEFGQGEWSEWSPEAMGTP  100 (104)
T ss_dssp             EEETTTBSCCCCCCCCEEECC
T ss_pred             EEeCCCccCCcCCcCCEEecC
Confidence            999999999998877665443

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.7e-14  Score=100.76  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=59.3

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      |.|..+ |+++.+.+|+.+.|.|.+.|.|.| .|+|+|||..+....                                 
T Consensus         2 P~f~~~-P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~---------------------------------   47 (85)
T d1rhfa2           2 PFFTVE-PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA---------------------------------   47 (85)
T ss_dssp             CEEEEC-CCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE---------------------------------
T ss_pred             CcEEEe-CCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC---------------------------------
Confidence            777744 899999999999999999999998 899999999886211                                 


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                          ...+.|......|.|.|+|.|.|..|..
T Consensus        48 ----~~~~~l~~~~~~d~G~Y~C~A~N~~G~~   75 (85)
T d1rhfa2          48 ----PSPSVLNVTGVTQSTMFSCEAHNLKGLA   75 (85)
T ss_dssp             ----ESSEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             ----CcceEEecCCccccEEEEEEEEcCCCcE
Confidence                1234445555679999999999999954

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.8e-14  Score=107.56  Aligned_cols=93  Identities=22%  Similarity=0.285  Sum_probs=74.9

Q ss_pred             ccCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEE
Q psy12426        403 AKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEF  481 (616)
Q Consensus       403 ~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~  481 (616)
                      +.+..+.|++|.++++..++.+++.|+|.+|..   +.+.+|.|+|+..+. .+... . .....+|+|.+|.|++.|.|
T Consensus         4 v~T~~~vP~~P~~~~~~~~~~~si~l~W~~p~~---~~i~~Y~i~y~~~~~~~~~~~-~-~~~~~~~~i~~L~p~t~Y~~   78 (102)
T d1x5za1           4 VITQTGVPGQPLNFKAEPESETSILLSWTPPRS---DTIANYELVYKDGEHGEEQRI-T-IEPGTSYRLQGLKPNSLYYF   78 (102)
T ss_dssp             CCCCSCCCCCCEEEEEECSSSSEEEEEEECCSC---CCCCEEEECBEESSSCCCBCC-E-ECSSSEEEEECCCTTCEEEE
T ss_pred             EECCCCCCcCCCCeEEEEccCCEEEEEEECCCC---CCccceEEEEEeCCCCceEEE-E-cCCcCEEEECCCCCCCEEEE
Confidence            445567899999999999999999999998642   258999999998765 33322 2 23467899999999999999


Q ss_pred             EEEEEcCCCCCCCCCCCCC
Q psy12426        482 RVIAVNKGGPGEPSKASAP  500 (616)
Q Consensus       482 ~v~a~n~~G~g~~s~~~~~  500 (616)
                      +|+|+|..|.|++|.....
T Consensus        79 ~V~A~n~~G~g~~S~~v~~   97 (102)
T d1x5za1          79 RLAARSPQGLGASTAEISA   97 (102)
T ss_dssp             CEEEECSSCEEEECCCEEE
T ss_pred             EEEEEcCCCEeCCCCCEEE
Confidence            9999999999988875544

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8.5e-13  Score=105.21  Aligned_cols=96  Identities=33%  Similarity=0.482  Sum_probs=78.3

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC---CceEeEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG---PWEKACIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~---~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      ..|++|.++++..++.+++.|.|.+|. +++..+..|.++|+..+.   .|... ........+.+.+|.|++.|.|||+
T Consensus        15 d~P~~P~~~~v~~~~~~sv~l~W~~p~-~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~frV~   92 (127)
T d1ueya_          15 DVPNPPFDLELTDQLDKSVQLSWTPGD-DNNSPITKFIIEYEDAMHKPGLWHHQ-TEVSGTQTTAQLNLSPYVNYSFRVM   92 (127)
T ss_dssp             CSCCCCEEEEEECCSSSCEEEEEECCC-CCSSCEEEEEEEEEBTTTCTTCEEEE-EEEESSCCEEEECCCTTCEECCEEE
T ss_pred             ccCcCCCCcEEEEecCCeEEEEEeCCc-ccccceEeeeeeeccccccceeEEEE-eecCCceEEEECCCccCCEEEEEEE
Confidence            678999999999999999999999765 455579999999987765   33333 3334567899999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCEEecc
Q psy12426        485 AVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      |+|..|.|++|..+..+++.+
T Consensus        93 A~n~~G~s~~S~~s~~~~t~~  113 (127)
T d1ueya_          93 AVNSIGKSLPSEASEQYLTKA  113 (127)
T ss_dssp             EEESSCBCCCCSCCCCEECCC
T ss_pred             EEcCCcCcCCcCCcccEEcCC
Confidence            999999999998877766554

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.2e-13  Score=101.67  Aligned_cols=86  Identities=19%  Similarity=0.318  Sum_probs=70.9

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      .++|.++.+..++.++|.|+|.+|..    .+.+|.|+|+.....+............+.|.+|.|++.|.|+|+|.|..
T Consensus         2 l~aP~n~~~~~~s~~si~l~W~~p~~----~~~~Y~i~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   77 (92)
T d1qg3a1           2 LGAPQNPNAKAAGSRKIHFNWLPPSG----KPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQ   77 (92)
T ss_dssp             CCCCEEEEEEECSTTCEEEEEECCSS----CCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEECSS
T ss_pred             CCcCCCCEEEEccCCEEEEEEEecCC----CccceEEeeeeccccccEEEEecCCccEEEECCCCCCcEEEEEEEEEeCC
Confidence            35788999999999999999998642    47889999988776322233445567899999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy12426        490 GPGEPSKASA  499 (616)
Q Consensus       490 G~g~~s~~~~  499 (616)
                      |.|++|.+..
T Consensus        78 G~g~~S~~~~   87 (92)
T d1qg3a1          78 GEGPYSSLVS   87 (92)
T ss_dssp             CBCCCCCCEE
T ss_pred             cCcCCCCCEE
Confidence            9999887654

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.40  E-value=8.2e-13  Score=97.13  Aligned_cols=87  Identities=24%  Similarity=0.362  Sum_probs=72.1

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +|.|...+...+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.+...    .|.|.++...|.|.|+|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~-~~~~~~~~----~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-GRATVTDS----GLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS-SSEEEETT----EEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc-ccEEEeee----eEEECCCChhhCEEEEEEEEEC
Confidence            366655555667889999999999999999999999999998854 45554432    7999999999999999999999


Q ss_pred             CCCceeeEEEEE
Q psy12426        295 WGTDKGTAKVTV  306 (616)
Q Consensus       295 ~g~~~~~~~l~v  306 (616)
                      .|.....+.|.|
T Consensus        77 ~G~~~~~~~l~V   88 (89)
T d1biha4          77 HGDKYFETLVQV   88 (89)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            998877777765

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.40  E-value=2.2e-13  Score=101.87  Aligned_cols=83  Identities=12%  Similarity=0.199  Sum_probs=67.2

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +|.|. ..|.++.|.+|+.+.|.|.+.|.|.| .|.|+|||..|.......-.                           
T Consensus         2 ~P~i~-~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~---------------------------   53 (94)
T d1biha1           2 YPVLK-DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL---------------------------   53 (94)
T ss_dssp             CCEEC-CCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE---------------------------
T ss_pred             CCEEE-ecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee---------------------------
Confidence            57777 45999999999999999999999976 69999999988742221111                           


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                        .....+|.|.++...|.|.|+|.|.|..|...
T Consensus        54 --~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1          54 --RKDEGSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             --CTTSCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             --cccceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence              12346899999999999999999999999643

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=8.6e-14  Score=109.67  Aligned_cols=94  Identities=17%  Similarity=0.182  Sum_probs=73.9

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeC----CC-CceEeEeecCCccEEEcCCCCCCCeEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPK----YG-PWEKACIVPANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~----~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      .+|++|.++.+..++.++|.|.|++|..+++..+.+|.|+|+..    .. .|....  .+....|+|.+|.|++.|.||
T Consensus        14 ~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~--~~~~~~~~v~~L~p~t~Y~fr   91 (120)
T d1wfua_          14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIY--TGYATRHVVEGLEPRTLYKFR   91 (120)
T ss_dssp             CCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEE--EESCSEEEEESCCTTCEEEEE
T ss_pred             cCCCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeec--cccccEEeCCCCCCCcEeeEE
Confidence            46777777888888999999999988877777788888877632    11 454433  345678999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCEEe
Q psy12426        483 VIAVNKGGPGEPSKASAPVTC  503 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~~~~~  503 (616)
                      |+|+|..|.|++|......|.
T Consensus        92 V~A~n~~G~s~~S~~~~~~T~  112 (120)
T d1wfua_          92 LKVTSPSGEYEYSPVVSVATT  112 (120)
T ss_dssp             EEEECSSSCEEECCCEEEECC
T ss_pred             EEEEeCCcEeCCCCCEEEEeC
Confidence            999999999999876554443

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.5e-13  Score=104.32  Aligned_cols=99  Identities=18%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             cCCEEccCCCCCCCCCCCCEEEEecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCC
Q psy12426        398 QSPITAKDPFGRPDRPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEG  476 (616)
Q Consensus       398 s~~~~~~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~  476 (616)
                      +..+.+.+...+|..|..+.+.....+++.|.|+++. ...++.|.+|.|+|+..+..+......   ...+.+.+|.|+
T Consensus         6 S~~v~v~T~~~~P~~pp~~~~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~~---~~~~~~~~L~p~   82 (117)
T d1wj3a_           6 SGTVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNT---NKTSAELVLPIK   82 (117)
T ss_dssp             CCCCCCCCSCCCCCCCCCSCBCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEEE---SSSEEEEECCCS
T ss_pred             CCCEEEEcCCCCcCCCCcceEEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeeec---eeeEEEeeccCC
Confidence            5677777778888877666666778999999999754 344557999999999877633332222   345677789999


Q ss_pred             CeEEEEEEEEcCCCCCCCCCCCC
Q psy12426        477 EEYEFRVIAVNKGGPGEPSKASA  499 (616)
Q Consensus       477 t~Y~~~v~a~n~~G~g~~s~~~~  499 (616)
                      +.|.|+|+|.|..|.|++|....
T Consensus        83 t~Y~~~V~A~n~~G~G~~S~~v~  105 (117)
T d1wj3a_          83 EDYIIEVKATTDGGDGTSSEQIR  105 (117)
T ss_dssp             SCEEEEEEEEESSCCCCBCCCEE
T ss_pred             cEEEEEEEEEcCCccCCCCCCEE
Confidence            99999999999999999887543

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.1e-12  Score=98.44  Aligned_cols=93  Identities=31%  Similarity=0.470  Sum_probs=78.3

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc--cccceEEeccccCCCeEEEEEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTYTRAENLIEGHDYNFRVKAV  386 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~  386 (616)
                      +|.+|.+ +.+..++.+++.|+|.+|..+++.+|.+|.|+++..+...|.....  ...+.+++.+|.+++.|.|+|.|.
T Consensus         1 PP~~P~~-~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~~~Y~frV~A~   79 (98)
T d1x5ya1           1 PTSAPQH-LTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGV   79 (98)
T ss_dssp             CCCCCEE-EEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEECCCTTCCEEEEEEEE
T ss_pred             CCCCCcC-cEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECCCcCCeEEEEEEEEE
Confidence            4667776 7788889999999999988877888999999999988888988754  355789999999999999999999


Q ss_pred             ecCcCCCCccccCCEE
Q psy12426        387 NKIGESLPLVCQSPIT  402 (616)
Q Consensus       387 n~~g~~~~~~~s~~~~  402 (616)
                      |..|.|.++..+..++
T Consensus        80 n~~G~s~~s~~~~~vt   95 (98)
T d1x5ya1          80 NIAGRSEPATLLQPVT   95 (98)
T ss_dssp             ETTEECCCCCCSSCBC
T ss_pred             CCCcCCCCcCCCCCEE
Confidence            9999998765554444

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.4e-12  Score=97.76  Aligned_cols=82  Identities=23%  Similarity=0.330  Sum_probs=71.4

Q ss_pred             CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCC
Q psy12426        412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG  490 (616)
Q Consensus       412 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G  490 (616)
                      +|.++++..++.+++.|+|.+|.   +..+.+|.|+|+..++ .|...........+|+|.+|.|++.|.|+|+|+|..|
T Consensus         8 ~P~~l~v~~~t~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~~~g   84 (95)
T d2fnba_           8 QLTDLSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGG   84 (95)
T ss_dssp             CCTTCEEECCCSSCEEEECCCCC---CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEETTE
T ss_pred             cCCCeEEEEEcCCEEEEEEEecC---CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEeCCc
Confidence            78899999999999999999764   2358999999998776 6666667778889999999999999999999999999


Q ss_pred             CCCCCC
Q psy12426        491 PGEPSK  496 (616)
Q Consensus       491 ~g~~s~  496 (616)
                      .|+++.
T Consensus        85 ~s~p~~   90 (95)
T d2fnba_          85 ESAPTT   90 (95)
T ss_dssp             ECCCCE
T ss_pred             EeCCEE
Confidence            987663

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.6e-13  Score=100.79  Aligned_cols=79  Identities=10%  Similarity=0.110  Sum_probs=64.7

Q ss_pred             CCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      .|.+++|.+|+.+.|.|.+.|.|.|.|+|+|++..|...+.+.....+.                          .....
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~--------------------------~~~~~   55 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQ--------------------------HWIGF   55 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETT--------------------------EEEEE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeeccc--------------------------Cceee
Confidence            3789999999999999999999999999999999987655443332221                          11346


Q ss_pred             eEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      |.|.++.+.|.|.|+|.|.|..|..
T Consensus        56 L~I~~~~~~D~G~Y~C~a~N~~G~~   80 (91)
T d1rhfa1          56 LSLKSVERSDAGRYWCQVEDGGETE   80 (91)
T ss_dssp             EEESSCCGGGCEEEEEEESSCTTCE
T ss_pred             EEECCCCcccCEEEEEEEEECCCCE
Confidence            8999999999999999999998864

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=4.6e-13  Score=99.02  Aligned_cols=81  Identities=7%  Similarity=-0.041  Sum_probs=67.0

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEe-eecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANII-GEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||.++.+.|+++.+.+|+++.|.|.+. |.|.|.|+|+|+++.+.. +.+.                             
T Consensus         1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~-~~~~-----------------------------   50 (89)
T d1gl4b_           1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP-SRAM-----------------------------   50 (89)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC-TTEE-----------------------------
T ss_pred             CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeec-cccE-----------------------------
Confidence            677888889999999999999999986 688999999999987652 2211                             


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                         .....|.|.++...|+|.|.|.|.|..|....
T Consensus        51 ---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~   82 (89)
T d1gl4b_          51 ---DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQG   82 (89)
T ss_dssp             ---EETTEEEECSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             ---eeceEEEEecCCcccCEEEEEEEEECCCEEEE
Confidence               11457999999999999999999999986543

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=3.1e-13  Score=102.35  Aligned_cols=89  Identities=18%  Similarity=0.376  Sum_probs=66.0

Q ss_pred             CCccCCC-CCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRR-HLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~-~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||.|... .+.+.++.+|+++.|.|.+.|.|.|.|+|+|+|..+.......-.          ..               
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~----------~~---------------   57 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEK----------HI---------------   57 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSS----------EE---------------
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCccccccccccee----------EE---------------
Confidence            6888643 244567889999999999999999999999999988631110000          00               


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                       .......|.|.++...|.|.|+|.|.|..|.....
T Consensus        58 -~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   92 (100)
T d1qz1a3          58 -FSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDAS   92 (100)
T ss_dssp             -ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             -eecCceEEEeCCCCcccCEEEEEEEEECCCEEEEE
Confidence             01234689999999999999999999999876443

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.38  E-value=3.4e-13  Score=99.94  Aligned_cols=86  Identities=22%  Similarity=0.443  Sum_probs=78.4

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      .|.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+........|.|.++...|.|.|+|.|.|..|.....
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   84 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE   84 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEE
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEE
Confidence            45778899999999999999999999999999999888888888888888899999999999999999999999998888


Q ss_pred             EEEEEe
Q psy12426        302 AKVTVL  307 (616)
Q Consensus       302 ~~l~v~  307 (616)
                      +.|.|.
T Consensus        85 ~~l~V~   90 (91)
T d1tnna_          85 FTLTIQ   90 (91)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            887764

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1e-12  Score=99.78  Aligned_cols=93  Identities=17%  Similarity=0.121  Sum_probs=73.4

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCC---CCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKK---DGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~---~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      +.+|.++.+..++.+++.|+|.+|..   .....+.+|.|+|+..+...............++|.||.|++.|.|+|+|.
T Consensus         2 ~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   81 (100)
T d1x5ja1           2 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVT   81 (100)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEECCEEEEE
T ss_pred             CCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCCCccEEEECCCCCCCEEEEEEEEE
Confidence            45688899999999999999997643   223456789999987766222223344557789999999999999999999


Q ss_pred             cCCCCCCCCCCCCCEE
Q psy12426        487 NKGGPGEPSKASAPVT  502 (616)
Q Consensus       487 n~~G~g~~s~~~~~~~  502 (616)
                      |..|.|++|......|
T Consensus        82 n~~g~s~~S~~~~~~T   97 (100)
T d1x5ja1          82 KGRRSSTWSMTAHGTT   97 (100)
T ss_dssp             CSSCBCCCCCCCCEEC
T ss_pred             eCCcCcCCCCeEEEEe
Confidence            9999999998776654

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.5e-13  Score=102.46  Aligned_cols=98  Identities=20%  Similarity=0.290  Sum_probs=76.0

Q ss_pred             CCCCCC-CCCCCCEEEEecCCeEEEEecCCCC-CCCCcceeEEEEEeeCCC-C---ceEe-EeecCCccEEEcCCCCCCC
Q psy12426        405 DPFGRP-DRPGQPTVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYG-P---WEKA-CIVPANITATSVPDLKEGE  477 (616)
Q Consensus       405 ~~~~~p-~~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~i~~~~~~~-~---~~~~-~~~~~~~~~~~l~~L~p~t  477 (616)
                      +..+.| ++|.++.+...+.+++.|+|.+|.. +.++++.+|.|+|+..+. .   +... .........+.|.+|.|++
T Consensus         3 T~~~~P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   82 (109)
T d1va9a1           3 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFA   82 (109)
T ss_dssp             SSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSC
T ss_pred             CcCCCCCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcce
Confidence            334455 5788999999999999999998754 445679999999988765 2   2221 2234557899999999999


Q ss_pred             eEEEEEEEEcCCCCCCCCCCCCCEE
Q psy12426        478 EYEFRVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       478 ~Y~~~v~a~n~~G~g~~s~~~~~~~  502 (616)
                      .|.|+|+|.|..|.|++|.+..+.|
T Consensus        83 ~Y~~~V~a~n~~G~g~~S~~v~~~T  107 (109)
T d1va9a1          83 QYGVVVQAFNRAGTGPSSSEINATT  107 (109)
T ss_dssp             CEEEEEEEEETTEECCCCCCEECCC
T ss_pred             EEEEEEEEEcCCcCCCCCCCEEEEc
Confidence            9999999999999999987655433

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=8e-13  Score=98.89  Aligned_cols=84  Identities=25%  Similarity=0.370  Sum_probs=69.1

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      |++|. +.+...+.+++.|+|.+|...++ +|.+|.|+|+..+. .|... .......+++|.+|.|++.|.|+|+|.|.
T Consensus         1 P~~P~-~~~~~~~~~sv~l~W~pP~~~~g-~i~~Y~i~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   77 (94)
T d2dn7a1           1 PGRPT-MMISTTAMNTALLQWHPPKELPG-ELLGYRLQYCRADEARPNTI-DFGKDDQHFTVTGLHKGTTYIFRLAAKNR   77 (94)
T ss_dssp             CCCCE-EEEEECSTTEEEEEEECCSSCSS-CCCEEEEEEEETTCSSCEEE-EEETTCCEEEEECCCTTCEEEEEEEEEET
T ss_pred             CCCCc-EeEEEEeCCEEEEEEeCCCCCCC-ceEEEEEEEEEcCCCCcEEE-EcCCCccEEEEEccCCeeEEEEEEEEEcC
Confidence            55664 55667789999999998765544 79999999998876 55544 45567889999999999999999999999


Q ss_pred             CCCCCCCC
Q psy12426        489 GGPGEPSK  496 (616)
Q Consensus       489 ~G~g~~s~  496 (616)
                      .|.|+++.
T Consensus        78 ~G~g~~s~   85 (94)
T d2dn7a1          78 AGLGEEFE   85 (94)
T ss_dssp             TEEEEEEE
T ss_pred             CcCCCCcc
Confidence            99998765

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.1e-12  Score=100.34  Aligned_cols=92  Identities=25%  Similarity=0.338  Sum_probs=71.8

Q ss_pred             CCCC-CCCCCCEEEEe--cCCeEEEEecCCCCCCCCcceeEEEEEeeCCC----CceEeEeecCCccEEEcCCCCCCCeE
Q psy12426        407 FGRP-DRPGQPTVTDW--GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG----PWEKACIVPANITATSVPDLKEGEEY  479 (616)
Q Consensus       407 ~~~p-~~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~----~~~~~~~~~~~~~~~~l~~L~p~t~Y  479 (616)
                      ...| .+|.++.+...  +.+++.|+|.+|...+ ++|.+|.|+|+....    .|.. ....+....++|.+|.|++.|
T Consensus         8 ~~~P~~pP~~~~v~~~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y   85 (111)
T d1x5ka1           8 ELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEAN-GKITGYIIYYSTDVNAEIHDWVI-EPVVGNRLTHQIQELTLDTPY   85 (111)
T ss_dssp             CCCCCSCCEEEEEEECSSCTTCEEEEEECCSCCS-SCCCEEEEEEESCSSSCTTTSEE-EEESTTCSEEEECSCCSSSEE
T ss_pred             CCCCCCCCCCcEEEEecCCCCEEEEEEEccccCC-CceeeeEEeeeecCCCCcceeEE-EEeCCCeeEEEECCCCCCCEE
Confidence            3445 45667776653  6779999999876654 479999999987654    3333 345677889999999999999


Q ss_pred             EEEEEEEcCCCCCCCCCCCCC
Q psy12426        480 EFRVIAVNKGGPGEPSKASAP  500 (616)
Q Consensus       480 ~~~v~a~n~~G~g~~s~~~~~  500 (616)
                      .|+|+|.|..|.|++|....+
T Consensus        86 ~~~V~A~n~~G~g~~S~~v~~  106 (111)
T d1x5ka1          86 YFKIQARNSKGMGPMSEAVQF  106 (111)
T ss_dssp             EEEEEEECSSCBCCCCCCEEE
T ss_pred             EEEEEEEcCCCCcCCCCCEEE
Confidence            999999999999999875443

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.7e-12  Score=94.39  Aligned_cols=80  Identities=21%  Similarity=0.313  Sum_probs=68.8

Q ss_pred             CCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCC
Q psy12426        414 GQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPG  492 (616)
Q Consensus       414 ~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g  492 (616)
                      ++|++..++.+++.|.|.+|..    .+.+|.|+|+..++ .+.....++++..+++|.+|.|++.|.|+|.|.|..|.|
T Consensus         1 rnl~v~~~t~~sv~l~W~~p~~----~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s   76 (91)
T d1fnaa_           1 RDLEVVAATPTSLLISWDAPAV----TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDS   76 (91)
T ss_dssp             CCCEEEEECSSCEEEECCCCSS----CCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCS
T ss_pred             CCCEEEEeCCCEEEEEEEccce----EecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCccC
Confidence            4789999999999999997642    58899999998766 565556677888999999999999999999999999999


Q ss_pred             CCCCC
Q psy12426        493 EPSKA  497 (616)
Q Consensus       493 ~~s~~  497 (616)
                      +++..
T Consensus        77 ~~~s~   81 (91)
T d1fnaa_          77 PASSK   81 (91)
T ss_dssp             SCSCC
T ss_pred             CCcCC
Confidence            87754

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=8.7e-13  Score=100.29  Aligned_cols=92  Identities=18%  Similarity=0.235  Sum_probs=74.3

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCC-CCCCCcceeEEEEEeeCCC-Cc--eEeEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPK-KDGGSPISQYIIEKKPKYG-PW--EKACIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~-~~~~~~i~~Y~i~~~~~~~-~~--~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      ++.+|.++.+..++.+++.|+|..+. ...++.+.+|.|+|+..++ .+  .......+....++|.+|.|++.|.|+|+
T Consensus         1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~   80 (101)
T d1x4ya1           1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQ   80 (101)
T ss_dssp             CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEE
Confidence            45688899999999999999998643 4556689999999998765 22  22234456778999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCC
Q psy12426        485 AVNKGGPGEPSKASAP  500 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~  500 (616)
                      |+|..|.|++|.....
T Consensus        81 a~n~~G~s~~S~~~~~   96 (101)
T d1x4ya1          81 CFNEGGESEFSNVMIC   96 (101)
T ss_dssp             EECTTCCCCCCCCEEE
T ss_pred             EEcCCCCCCCCCcEEE
Confidence            9999999999875443

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-12  Score=96.83  Aligned_cols=81  Identities=21%  Similarity=0.372  Sum_probs=69.7

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      ++|.++++..++.+++.|+|.+|..    .+.+|+|+|+..+. .|.....++++..+++|.+|.|++.|.|+|+|+|..
T Consensus         2 d~P~~l~v~~vt~~sv~l~W~~p~~----~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   77 (89)
T d1fnfa3           2 DSPTGIDFSDITANSFTVHWIAPRA----TITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGR   77 (89)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECCSS----CCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETT
T ss_pred             ccCcCCEEEEecCCEEEEEEEeCCC----EEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcCC
Confidence            4788999999999999999997642    58899999998766 566666677888999999999999999999999999


Q ss_pred             CCCCCC
Q psy12426        490 GPGEPS  495 (616)
Q Consensus       490 G~g~~s  495 (616)
                      |.|++.
T Consensus        78 g~s~p~   83 (89)
T d1fnfa3          78 EESPLL   83 (89)
T ss_dssp             EECCCE
T ss_pred             cCcCCE
Confidence            987653

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-12  Score=97.10  Aligned_cols=82  Identities=21%  Similarity=0.210  Sum_probs=70.7

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      +++|.++.+..++.+++.|+|.+|..    ++.+|.|+|+..++ .+......+++...++|.+|.|++.|.|+|+|+|.
T Consensus         2 ld~P~~l~v~~~s~~s~~l~W~~p~~----~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~   77 (90)
T d1tena_           2 LDAPSQIEVKDVTDTTALITWFKPLA----EIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRG   77 (90)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECCSS----CCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCCCcEEEEecCCEEEEEEEeCce----EeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEeC
Confidence            56889999999999999999997642    58899999998776 55555566788899999999999999999999999


Q ss_pred             CCCCCCC
Q psy12426        489 GGPGEPS  495 (616)
Q Consensus       489 ~G~g~~s  495 (616)
                      .|.|+++
T Consensus        78 ~g~s~~~   84 (90)
T d1tena_          78 DMSSNPA   84 (90)
T ss_dssp             TEECCCE
T ss_pred             CCEeCCE
Confidence            9998754

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.9e-14  Score=100.55  Aligned_cols=72  Identities=15%  Similarity=0.196  Sum_probs=57.3

Q ss_pred             CCccC-CCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHID-RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~-~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +|+|+ .+.|+++++.+|+.+.|.|.+.|+|.|.|+|+|+|..+..                                  
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~----------------------------------   47 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP----------------------------------   47 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECC----------------------------------
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeecccee----------------------------------
Confidence            47775 3457899999999999999999999999999999976652                                  


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                             .+.+.+++..|+|.|.|.|.|..|...
T Consensus        48 -------~~~~~~v~~~d~G~Y~C~A~N~~G~~~   74 (84)
T d2oz4a3          48 -------IGESVTVTRDLEGTYLCRARSTQGEVT   74 (84)
T ss_dssp             -------TTSCEECCGGGCEEEEEEEEETTEEEE
T ss_pred             -------eeeeeccccCCCCEEEEEEEcCCCEEE
Confidence                   122345667888899999998888653

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.8e-13  Score=102.02  Aligned_cols=93  Identities=25%  Similarity=0.347  Sum_probs=76.3

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEe-EeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKA-CIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~-~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      ..+.+|.++.+. .+.++|.|+|.+|... +.+|.+|.|+|+..++.|... .......+.++|.+|.|++.|.|||+|+
T Consensus         6 s~~sPP~~~~~~-~t~~si~l~W~pp~~~-~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~   83 (108)
T d1v5ja_           6 SGLSPPRGLVAV-RTPRGVLLHWDPPELV-PKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAF   83 (108)
T ss_dssp             CCCCCCEEEEEE-ECSSSEEEEEECCSCC-SSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEE
T ss_pred             CCCCcCCCeEEE-EcCCEEEEEEEecccC-CCceeEEEEEeeeeeeeeeeccccccceeeeEEEEeccCCcEEEEEEEEE
Confidence            456778888764 5788999999987654 457999999999887777655 3456678899999999999999999999


Q ss_pred             cCCCCCCCCCCCCCEE
Q psy12426        487 NKGGPGEPSKASAPVT  502 (616)
Q Consensus       487 n~~G~g~~s~~~~~~~  502 (616)
                      |..|.|++|......+
T Consensus        84 n~~g~s~~S~~~~~~T   99 (108)
T d1v5ja_          84 AGSFVSDPSNTANVST   99 (108)
T ss_dssp             ETTEEEEECSCCCCCC
T ss_pred             eCCCEeCCcCceEEEC
Confidence            9999999998766544

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=4e-13  Score=99.63  Aligned_cols=76  Identities=8%  Similarity=0.069  Sum_probs=63.0

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      +.|+++.+.+|+.+.|.|.+.|.|.|.|+|+|+++.+.....+.-.                             .....
T Consensus         6 ~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~-----------------------------~~~~~   56 (92)
T d1epfa2           6 NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI-----------------------------VLSNN   56 (92)
T ss_dssp             ECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEE-----------------------------ECTTS
T ss_pred             EcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeee-----------------------------eeeee
Confidence            5699999999999999999999999999999999988753332222                             12245


Q ss_pred             ceEecCcccCCeEEEEEEEEcCCCC
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVNKGGP  111 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n~~g~  111 (616)
                      +|.|.++.+.|+|.|+|.|.|..|.
T Consensus        57 ~L~I~~~~~~D~G~Y~C~a~n~~~~   81 (92)
T d1epfa2          57 YLQIRGIKKTDEGTYRCEGRILARG   81 (92)
T ss_dssp             CEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             eEEECCCCHHhCEEEEEEEEECcCC
Confidence            7999999999999999999997653

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.6e-12  Score=98.82  Aligned_cols=94  Identities=20%  Similarity=0.166  Sum_probs=66.3

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCC--cceeEEEEEeeCCC-CceEeE--eecCCccEEEcCCCCCCCeEEEEE
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS--PISQYIIEKKPKYG-PWEKAC--IVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~--~i~~Y~i~~~~~~~-~~~~~~--~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      +|.+|.++.+.....+++.|+|.+|...++.  ....|.|+|+..++ .|....  ........+++.+|.|++.|.|||
T Consensus         1 kP~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV   80 (101)
T d1iarb2           1 KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARV   80 (101)
T ss_dssp             CCCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEEE
T ss_pred             CcccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEEE
Confidence            4889999999999999999999987654432  34569999988876 444333  234445788999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCEE
Q psy12426        484 IAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~~~~  502 (616)
                      +|.|..|.|.+|+.+..++
T Consensus        81 rA~~~~g~g~wSewS~~v~   99 (101)
T d1iarb2          81 RAWAQAYNTTWSEWSPSTK   99 (101)
T ss_dssp             EEECGGGTCCCCCCCCCEE
T ss_pred             EEEcCCCCCCCcCCCCCEE
Confidence            9999999999999887654

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.35  E-value=1.1e-12  Score=98.33  Aligned_cols=79  Identities=11%  Similarity=0.041  Sum_probs=64.2

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      ++++.+.+|+++.|.|.+.|.|.|.|.|+|+|+.+.....+.....+                          .....+|
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~--------------------------~~~~~~L   63 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHN--------------------------RTSGKRL   63 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCS--------------------------SSTTSEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeee--------------------------ecCCCEE
Confidence            57899999999999999999999999999999988743333222111                          2234689


Q ss_pred             EecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      .|.++.+.|.|.|+|.|.|..|...
T Consensus        64 ~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3          64 LFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             EESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             EEEeccccccEEEEEEEEECCCcEE
Confidence            9999999999999999999999754

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.2e-13  Score=102.15  Aligned_cols=81  Identities=22%  Similarity=0.368  Sum_probs=67.3

Q ss_pred             CCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        410 PDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       410 p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      |++|.++++..++.+++.|+|.+|..    .+.+|.|+|+..++.... ..+.++..+++|.+|.|++.|.|+|+|++..
T Consensus         1 P~~P~~l~~~~~t~~si~l~W~~p~~----~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~   75 (102)
T d2cuha1           1 PDGPTQLRALNLTEGFAVLHWKPPQN----PVDTYDIQVTAPGAPPLQ-AETPGSAVDYPLHDLVLHTNYTATVRGLRGP   75 (102)
T ss_dssp             CSSCEEEECCCCSSSCEEEEEECCSS----CCSEEEEEEECSSSCCEE-EEEETTCSEEEECSCCSSSEEEEEEEEEETT
T ss_pred             CcCCCccEEEEeCCCEEEEEEEeeec----cceeeEEEEEecccccee-eeeeeeeeeEEEccEEeeEEEEEEEEEEeCC
Confidence            67888999999999999999997642    588999999887653222 3455778899999999999999999999998


Q ss_pred             CCCCCC
Q psy12426        490 GPGEPS  495 (616)
Q Consensus       490 G~g~~s  495 (616)
                      |.|+++
T Consensus        76 ~~s~~~   81 (102)
T d2cuha1          76 NLTSPA   81 (102)
T ss_dssp             EECCCE
T ss_pred             CCcCCE
Confidence            887654

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.1e-13  Score=106.92  Aligned_cols=109  Identities=21%  Similarity=0.238  Sum_probs=71.0

Q ss_pred             CCccCC----CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCC------ce-eEeeecc
Q psy12426          1 APHIDR----RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTP------KG-KVLDLIE   69 (616)
Q Consensus         1 ~P~i~~----~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~------~~-~v~~~~~   69 (616)
                      ||+|.+    ..+..+.|.+|+.|+|.|.+.|.|.|.|.|+|++..+.......+.........      .. .....  
T Consensus         4 PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   81 (130)
T d1gxea_           4 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET--   81 (130)
T ss_dssp             CCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSC--
T ss_pred             CCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeecc--
Confidence            899864    456789999999999999999999999999999988764222222111110000      00 00000  


Q ss_pred             CCccceeeccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         70 GNHPIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        70 ~~~p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                        .... .. ........|.|.++...|+|.|.|.|.|..|.....
T Consensus        82 --~~r~-~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  123 (130)
T d1gxea_          82 --EGRV-RV-ETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN  123 (130)
T ss_dssp             --SSSC-EE-EEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEE
T ss_pred             --CceE-EE-EECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEE
Confidence              0000 00 001234579999999999999999999999976443

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.34  E-value=4.1e-13  Score=100.93  Aligned_cols=82  Identities=12%  Similarity=0.183  Sum_probs=64.8

Q ss_pred             CCccCCCCCCceEecCC---CeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAG---TTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g---~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +|.+.. .|.++.+.+|   ++|.|.|.+.|.|.|.|+|+|||+.+.....+.-..                        
T Consensus         4 ~P~f~~-~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~------------------------   58 (97)
T d1cs6a1           4 GPVFEE-QPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL------------------------   58 (97)
T ss_dssp             EEEEEE-CCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEE------------------------
T ss_pred             CCEEEE-eCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEe------------------------
Confidence            467764 4889988877   799999999999999999999999887533322221                        


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                           .....|.|..+...|.|.|+|.|.|..|..
T Consensus        59 -----~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~   88 (97)
T d1cs6a1          59 -----VAGDLVISNPVKAKDAGSYQCVATNARGTV   88 (97)
T ss_dssp             -----ETTEEEEESCCHHHHCEEEEEEEEETTEEE
T ss_pred             -----eeeeEEEEecccccCCEEEEEEEEECCCEE
Confidence                 113467788899999999999999999965

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.34  E-value=1.3e-12  Score=95.91  Aligned_cols=81  Identities=21%  Similarity=0.318  Sum_probs=64.7

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      +|++|.++.+..++.+++.|+|++|..+ + .+.+|.|++...     ...  ......|++.+|.|++.|.|+|+|+|.
T Consensus         3 AP~~P~~l~~~~~~~~sv~lsW~~p~~~-~-~i~~Y~i~~~~~-----~~~--~~~~t~~~~~~L~p~t~Y~~~V~A~n~   73 (88)
T d1k85a_           3 APTAPTNLASTAQTTSSITLSWTASTDN-V-GVTGYDVYNGTA-----LAT--TVTGTTATISGLAADTSYTFTVKAKDA   73 (88)
T ss_dssp             SCCCCEEEEEEEECSSCEEEEEECCSCC-S-SEEEEEEEESSS-----EEE--EESSSEEEECCCCSSCEEEEEEEEEET
T ss_pred             CcCCCCCcEEEEecCCEEEEEEeCCCCC-C-CEEEEEEEccce-----EEE--ecCCCEEEECCCCCCCEEEEEEEEEEC
Confidence            5889999999999999999999976543 3 488999986431     111  233578999999999999999999999


Q ss_pred             CC-CCCCCCCC
Q psy12426        489 GG-PGEPSKAS  498 (616)
Q Consensus       489 ~G-~g~~s~~~  498 (616)
                      .| .|++|...
T Consensus        74 ~G~~s~~S~~v   84 (88)
T d1k85a_          74 AGNVSAASNAV   84 (88)
T ss_dssp             TTEECCCCCCE
T ss_pred             CCCcCCCCcCE
Confidence            99 68877643

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.33  E-value=5.4e-13  Score=100.13  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=61.9

Q ss_pred             CceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceE
Q psy12426         10 GDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGK   89 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~   89 (616)
                      ..+.|.+|+++.|.|.+.|+|.|.|+|+|||++|...+.+.-.-                           ......+|.
T Consensus        13 ~~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~---------------------------~~~~~~~L~   65 (97)
T d3dara1          13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK---------------------------VRNQHWSLI   65 (97)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCE---------------------------EEGGGTEEE
T ss_pred             ccEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEE---------------------------EcCCcEEEE
Confidence            34678999999999999999999999999999987543321100                           011246899


Q ss_pred             ecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         90 VLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        90 i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                      |.++...|.|.|+|.|.|..|....
T Consensus        66 I~~v~~~D~G~Y~C~a~N~~G~~~~   90 (97)
T d3dara1          66 MESVVPSDKGNYTCVVENEYGSINH   90 (97)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ECCCCcccCEEEEEEEEECCCEEEE
Confidence            9999999999999999999996543

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=9.7e-13  Score=114.38  Aligned_cols=189  Identities=15%  Similarity=0.094  Sum_probs=81.0

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEec
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      .|.+|.+ +.+...+.+++.|+|.+|...++ .+.+|.|+++......+..    .........+.+...|.+++.+.+.
T Consensus         2 ~Ps~P~~-~~~~~~s~~si~vsW~pP~~~ng-~i~~Y~V~~~~~~~~~~~~----~~~~~~~~~~~~~~~y~~~v~~~~~   75 (196)
T d2dtge2           2 NPSVPLD-PISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELF----ELDYCLKGLKLPSRTWSPPFESEDS   75 (196)
T ss_dssp             CCCCCEE-EEEEECSSSCEEEEEECCCCSSS-SCSEEECCEEEECCCCSCT----TCSSSCSCCCCCC------------
T ss_pred             cCcCCcC-CEEEeccCCEEEEEEECCCCCCC-cEEEEEEEEEcCCCCCcee----EEeeEEeccccceeEEEEEEEEEcC
Confidence            5777877 77888899999999998876544 7999999987654332211    1112223346677889999999988


Q ss_pred             CcCCCCccccCCEEc----cCCCCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCC
Q psy12426        389 IGESLPLVCQSPITA----KDPFGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPAN  464 (616)
Q Consensus       389 ~g~~~~~~~s~~~~~----~~~~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~  464 (616)
                      .+.+...........    ......+..+..+.+.......+.+.|..+..... ....|.+.+...+. ..........
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~  153 (196)
T d2dtge2          76 QKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRK-RRSLGDVGNAGNNE-EHRPFEKVVN  153 (196)
T ss_dssp             ----------------------------------------------------------------------CCSCSCEECS
T ss_pred             CccccCcCCccceecCCCCccccccccCCcCcEEEeccCCceeecccCcCCCcc-ceEEEEEEeecCCC-ccEEEEeccc
Confidence            877644321111111    00111122333444445556667777775433211 12223333222222 1111233345


Q ss_pred             ccEEEcCCCCCCCeEEEEEEEEcCCCCCCCCCCCCCEEecc
Q psy12426        465 ITATSVPDLKEGEEYEFRVIAVNKGGPGEPSKASAPVTCKP  505 (616)
Q Consensus       465 ~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s~~~~~~~~~~  505 (616)
                      ..+++|.+|.|++.|.|+|+|+|..|.+..+..+..+..++
T Consensus       154 ~~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~rT  194 (196)
T d2dtge2         154 KESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSART  194 (196)
T ss_dssp             CSEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEEC
T ss_pred             eEEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceEEeeC
Confidence            77999999999999999999999999998887777766553

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=96.97  Aligned_cols=80  Identities=26%  Similarity=0.454  Sum_probs=67.5

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      ++|.++++..++.+++.|+|.+|..    .+.+|.|+|+..++ .+............++|.+|.|++.|.|+|+|+|..
T Consensus         2 daP~nl~v~~~~~~s~~l~W~~p~~----~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~   77 (89)
T d1fnha3           2 DAPSNLRFLATTPNSLLVSWQPPRA----RITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNN   77 (89)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECCSS----CCSEEEEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESSS
T ss_pred             ccCcCCEEEEecCCEEEEEEeCCCc----CCceEEEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcCC
Confidence            4688999999999999999997642    58999999998776 444444556678899999999999999999999999


Q ss_pred             CCCCC
Q psy12426        490 GPGEP  494 (616)
Q Consensus       490 G~g~~  494 (616)
                      |.|++
T Consensus        78 g~S~p   82 (89)
T d1fnha3          78 QKSEP   82 (89)
T ss_dssp             CEEEE
T ss_pred             CEeCC
Confidence            98753

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.31  E-value=5.1e-12  Score=92.82  Aligned_cols=80  Identities=24%  Similarity=0.415  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      ++|.++++..++.+++.|+|.+|..    ++.+|.|+|+..+. .|... ........++|.+|.|++.|.|+|.|+|..
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~~~~----~~~~Y~i~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   76 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTPPRS----RVDSYRVSYVPITGGTPNVV-TVDGSKTRTKLVKLVPGVDYNVNIISVKGF   76 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECCCSS----CCSEEEEEEEETTCCCCEEE-EEETTCCEEEECSCCSSCEEEEEEEEEETT
T ss_pred             cCCcceEEEEecCCEEEEEEEcccE----eeceEEEEEEeccCCceEEE-EecCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence            4788999999999999999997642    58899999998877 44443 456678899999999999999999999999


Q ss_pred             CCCCCC
Q psy12426        490 GPGEPS  495 (616)
Q Consensus       490 G~g~~s  495 (616)
                      |.|++.
T Consensus        77 g~s~p~   82 (88)
T d1qr4a2          77 EESEPI   82 (88)
T ss_dssp             EECCCE
T ss_pred             CCcCCE
Confidence            988753

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.31  E-value=1.7e-12  Score=100.29  Aligned_cols=96  Identities=14%  Similarity=0.115  Sum_probs=65.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee----ccceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      +|.|...-|+++++.+|+++.|.|.+.|.|.|.|+|+|++.....    .+.........        .           
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~--------~-----------   64 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA--------A-----------   64 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECC--------E-----------
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeeccc--------c-----------
Confidence            588876668999999999999999999999999999998754321    11111111000        0           


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ...........|.|.++...|.|.|.|.|.|..|....+
T Consensus        65 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~  103 (109)
T d2fdbp2          65 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHS  103 (109)
T ss_dssp             EEEETTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             eeEEecCCcEEEEECCCCHHHCeEEEEEEEECCCEEEEE
Confidence            000001224579999999999999999999999976544

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2e-12  Score=95.10  Aligned_cols=82  Identities=26%  Similarity=0.464  Sum_probs=65.2

Q ss_pred             CCCCCEEEEe--cCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcC
Q psy12426        412 RPGQPTVTDW--GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNK  488 (616)
Q Consensus       412 ~p~~~~~~~~--~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~  488 (616)
                      +|.++.+...  ..+++.|+|.+|.   +..|.+|+|+|+..++ .+.....++++...++|.+|.|++.|.|+|.|+|.
T Consensus         2 aP~~~~vt~~~~~~~s~~vsW~~P~---~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~~   78 (93)
T d1owwa_           2 GPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQ   78 (93)
T ss_dssp             CCCEEECCCCSSCTTCEEEEEECCS---SSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEES
T ss_pred             cCcccEEEEccCCCCEEEEEeeccc---ccceeEEEEEEeeccccceeeeeccCCCccEEEECCcccCcEEEEEEEEEeC
Confidence            4556665554  3489999999874   3369999999998766 33334567788999999999999999999999999


Q ss_pred             CCCCCCCC
Q psy12426        489 GGPGEPSK  496 (616)
Q Consensus       489 ~G~g~~s~  496 (616)
                      .|.|+.+.
T Consensus        79 ~G~s~~~~   86 (93)
T d1owwa_          79 YGHQEVTR   86 (93)
T ss_dssp             SSCEEEEE
T ss_pred             CCccCcEE
Confidence            99988653

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.4e-11  Score=94.02  Aligned_cols=96  Identities=22%  Similarity=0.190  Sum_probs=75.3

Q ss_pred             CCCCCCCCEEEEe-cCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        409 RPDRPGQPTVTDW-GKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       409 ~p~~p~~~~~~~~-~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .|+||.++.+... ..+.+.|.|.+|.......+..|.|+|+..++ .+..........+++.|.+|.|++.|.|+|+|.
T Consensus         4 k~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRar   83 (105)
T d1erna2           4 LLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRAR   83 (105)
T ss_dssp             CCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             ccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEEEE
Confidence            5789999998876 44569999998876667778899999998876 444455556667899999999999999999998


Q ss_pred             cC--CCCCCCCCCCCCEEec
Q psy12426        487 NK--GGPGEPSKASAPVTCK  504 (616)
Q Consensus       487 n~--~G~g~~s~~~~~~~~~  504 (616)
                      +.  .|.|.+|..+..++..
T Consensus        84 ~~~~~~~G~WSeWS~~v~~~  103 (105)
T d1erna2          84 MAEPSFGGFWSAWSEPVSLL  103 (105)
T ss_dssp             ECSSSCCBCCCCCCCCEEEE
T ss_pred             ECCCCCCCCCCCCCCCEEee
Confidence            54  4567788887776654

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=6.8e-12  Score=93.73  Aligned_cols=81  Identities=22%  Similarity=0.377  Sum_probs=68.4

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      ++|.++++..++.+++.|+|.+|..    .+.+|.|+|+...+ .+...........++++.+|.|++.|.|+|+|+|..
T Consensus         3 d~P~~l~v~~vt~~sv~l~W~~p~~----~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   78 (94)
T d1j8ka_           3 DRPKGLAFTDVDVDSIKIAWESPQG----QVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDD   78 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCCSS----CCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSS
T ss_pred             CCCCCCEEEEecCCEEEEEEeCCCc----cccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence            4788999999999999999997643    47889999998776 444444556778899999999999999999999999


Q ss_pred             CCCCCC
Q psy12426        490 GPGEPS  495 (616)
Q Consensus       490 G~g~~s  495 (616)
                      |.|++.
T Consensus        79 g~S~p~   84 (94)
T d1j8ka_          79 MESQPL   84 (94)
T ss_dssp             CCCCCE
T ss_pred             CCcCCE
Confidence            987654

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.1e-12  Score=102.02  Aligned_cols=95  Identities=21%  Similarity=0.250  Sum_probs=74.1

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCC--------cceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCC
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGS--------PISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGE  477 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~--------~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t  477 (616)
                      ..|..+..+.+..++.+++.|+|.+|...++.        .+..|.++++..+.  .|..  ...+....++|.+|.|++
T Consensus        16 ~~~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~--~~~~~~~~~~i~~L~P~t   93 (137)
T d1wk0a_          16 ALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKS--VYVGEETNITLNDLKPAM   93 (137)
T ss_dssp             HHTTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEE--EEEESCSEEEECSCCTTC
T ss_pred             cCCCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEE--EEecCccEEEECCCCCCc
Confidence            34556667788899999999999987654432        46679999877654  3443  334567899999999999


Q ss_pred             eEEEEEEEEcCCCCCCCCCCCCCEEec
Q psy12426        478 EYEFRVIAVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       478 ~Y~~~v~a~n~~G~g~~s~~~~~~~~~  504 (616)
                      .|.|+|+|.|..|.|++|....+.|..
T Consensus        94 ~Y~f~V~A~n~~G~g~~S~~~~~~T~~  120 (137)
T d1wk0a_          94 DYHAKVQAEYNSIKGTPSEAEIFTTLS  120 (137)
T ss_dssp             EECEEEEEEETTEECCCCCCCCEECCC
T ss_pred             EEEEEEEEEcCCcccCCCCCEEEECCC
Confidence            999999999999999999877765543

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=6.2e-12  Score=93.52  Aligned_cols=84  Identities=24%  Similarity=0.329  Sum_probs=72.3

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      .+++|.++.+..++.+++.|+|.+|..    ++.+|.|+|+..++ .+......+.+...+++.+|.|++.|.|+|+|+|
T Consensus         3 v~~~P~~l~v~~v~~~si~v~W~~p~~----~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~   78 (93)
T d1tdqa1           3 VIDGPTQILVRDVSDTVAFVEWTPPRA----KVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVR   78 (93)
T ss_dssp             SSCCCEEEEEEEECSSCEEEEEECCSS----CCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEE
T ss_pred             cCCcCCCCEEEEeCCCEEEEEEEcccc----CCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEe
Confidence            456888999999999999999997632    58899999998877 5656666778889999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy12426        488 KGGPGEPSK  496 (616)
Q Consensus       488 ~~G~g~~s~  496 (616)
                      ..|.|+++.
T Consensus        79 ~~g~s~~~~   87 (93)
T d1tdqa1          79 GTNESDASS   87 (93)
T ss_dssp             TTEECCCEE
T ss_pred             CCCCcCCEE
Confidence            999987653

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.30  E-value=3.7e-12  Score=94.15  Aligned_cols=88  Identities=20%  Similarity=0.282  Sum_probs=71.4

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .+|.+....+.++.+.+|+.+.|.|.+.|.|.|.+.|++++......      .......|.|.++...|.|.|+|.|.|
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~N   76 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAEN   76 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE------eeeeeeEEEeCCCCccCCEEEEEEEEE
Confidence            35666666678899999999999999999999999999977543221      112234899999999999999999999


Q ss_pred             CCCCceeeEEEEEe
Q psy12426        294 SWGTDKGTAKVTVL  307 (616)
Q Consensus       294 ~~g~~~~~~~l~v~  307 (616)
                      ..|.....+.|.|.
T Consensus        77 ~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          77 IKGRDTYQGRIIIH   90 (91)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99988888877764

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.5e-12  Score=92.74  Aligned_cols=81  Identities=16%  Similarity=0.410  Sum_probs=68.7

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG  490 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G  490 (616)
                      ++|.++++..++.+++.|+|.+|..    ++.+|.|+|+..++..............++|.+|.||+.|.|+|+|+|..|
T Consensus         3 spP~~l~v~~~~~~si~v~W~~p~~----~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   78 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWRTKTE----TITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA   78 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEECCSS----CCCCEEEEEEESSSSCCEEEECCTTCSEEEEESCCTTCEEEEEEEEEETTE
T ss_pred             CcCCCCEEEEecCCEEEEEEECCCC----CCceeEEEEEEccCCceEEEecCCCccEEEeCCCCCCcEEEEEEEEEeCCC
Confidence            5788999999999999999997642    588999999988763333455667789999999999999999999999999


Q ss_pred             CCCCC
Q psy12426        491 PGEPS  495 (616)
Q Consensus       491 ~g~~s  495 (616)
                      .|++.
T Consensus        79 ~s~p~   83 (90)
T d1fnha2          79 RSSPV   83 (90)
T ss_dssp             ECCCE
T ss_pred             CcCCE
Confidence            88743

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1e-11  Score=96.28  Aligned_cols=86  Identities=20%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      ..|++|.++++.. ..+++.|.|.+|..++ ++|.+|.|+|+..+..+.. .....+...++|.+|.|++.|.|+|+|.|
T Consensus        19 ~vP~~P~~~~~~~-~~~si~v~W~~p~~~~-g~i~~Y~i~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   95 (113)
T d1x5ia1          19 RVPEVPSSLHVRP-LVTSIVVSWTPPENQN-IVVRGYAIGYGIGSPHAQT-IKVDYKQRYYTIENLDPSSHYVITLKAFN   95 (113)
T ss_dssp             SCCCSCSEEEEEE-ETTEEEEEEECCSCTT-BCCCEEEEEECSSCGGGEE-EECCTTCCEEEECSCCSSCEECCEEEEEC
T ss_pred             CCCCCCEeeeeee-CCCEEEEEEEccccCC-ccEEEEEEEeeecccccee-eeeeCCccEEEEeccccCcEEEEEEEEEC
Confidence            5788899988865 5689999999876654 4799999999877653333 35567788999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy12426        488 KGGPGEPSK  496 (616)
Q Consensus       488 ~~G~g~~s~  496 (616)
                      ..|.|+++.
T Consensus        96 ~~G~g~~~~  104 (113)
T d1x5ia1          96 NVGEGIPLY  104 (113)
T ss_dssp             SSCBCCCCC
T ss_pred             CCcCCCCee
Confidence            999998654

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.1e-12  Score=99.15  Aligned_cols=100  Identities=24%  Similarity=0.309  Sum_probs=77.3

Q ss_pred             CCCCCCCCEEEE--ecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeE--eecCCccEEEcCCCCCCCeEEEEE
Q psy12426        409 RPDRPGQPTVTD--WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKAC--IVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       409 ~p~~p~~~~~~~--~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~--~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      .|++|.++.+..  .+.+++.|+|.+|...+ +.+.+|.|+|+...+ .|....  ...+....++|.+|.+++.|.|+|
T Consensus         4 kP~pP~~~~v~~~~~~~~si~v~W~~p~~~~-~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V   82 (115)
T d1bqua2           4 KPNPPHNLSVINSEELSSILKLTWTNPSIKS-VIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI   82 (115)
T ss_dssp             ECCCCEEEEEECC--CCSCEEEEEECCGGGG-TSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEE
T ss_pred             ECCCCCCCEEEEeccCCCEEEEEEeeccccc-cceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEEE
Confidence            477888887764  56788999999776544 468999999998876 554432  234557899999999999999999


Q ss_pred             EEEcCCCCCCCCCCCCCEEeccCcCC
Q psy12426        484 IAVNKGGPGEPSKASAPVTCKPRFVA  509 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~~~~~~~~~~~  509 (616)
                      +|.|..|.|.+|..+...+......+
T Consensus        83 ~a~~~~G~g~~S~~S~~~~~~T~~~~  108 (115)
T d1bqua2          83 RCMKEDGKGYWSDWSEEASGITYEDR  108 (115)
T ss_dssp             EEEETTSCSCCCCCCCCEEEEECCCH
T ss_pred             EEEeCCCccCCcCCcCCEEEECCCCC
Confidence            99999999999888776666544333

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.3e-11  Score=94.32  Aligned_cols=97  Identities=13%  Similarity=0.080  Sum_probs=76.4

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCC-CCCcceeEEEEEeeCCC--CceEeEeecCCccEEEcCCCCCCCeEEEEEEE
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKD-GGSPISQYIIEKKPKYG--PWEKACIVPANITATSVPDLKEGEEYEFRVIA  485 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~-~~~~i~~Y~i~~~~~~~--~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a  485 (616)
                      .+.+|.++++..++.+++.|+|.+|... ....+..|.++++..+.  .+............+.|.+|.|++.|.|+|+|
T Consensus         2 rl~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVra   81 (104)
T d2b5ib2           2 RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRV   81 (104)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEEE
T ss_pred             ccCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEEE
Confidence            3678999999999999999999987643 33456789999987765  33334455567889999999999999999999


Q ss_pred             EcCCCC-CCCCCCCCCEEecc
Q psy12426        486 VNKGGP-GEPSKASAPVTCKP  505 (616)
Q Consensus       486 ~n~~G~-g~~s~~~~~~~~~~  505 (616)
                      .|..|. |.+|..+..++.++
T Consensus        82 ~~~~g~~g~wS~wS~~v~~~T  102 (104)
T d2b5ib2          82 KPLQGEFTTWSPWSQPLAFRT  102 (104)
T ss_dssp             EESCCSSCCCCCCCCCEEEEC
T ss_pred             EECCCCCCCCCCCcCCEEEEC
Confidence            999984 67777777665543

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.8e-12  Score=96.61  Aligned_cols=85  Identities=11%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeee------ccceEEEeecCCCCCceeEeeeccCCcc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNL------RPIWEKCAQTEGDTPKGKVLDLIEGNHP   73 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p   73 (616)
                      ||.|.. .+.+..+.+|+.|.|.|.+.|.|.| .++|+|++..+..      .++|....                    
T Consensus         2 PP~i~~-~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~--------------------   60 (101)
T d3b5ha1           2 PPRVKA-VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS--------------------   60 (101)
T ss_dssp             SCCCEE-SCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE--------------------
T ss_pred             CceEEE-cCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEe--------------------
Confidence            788874 4889999999999999999999988 6999998754432      44443332                    


Q ss_pred             ceeeccccCCCCCceEecCcc-cCCeEEEEEEEEcCCCCCCC
Q psy12426         74 IWEKCAQTEGDTPKGKVLDLI-EGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        74 ~w~~~~~~~~~~~~l~i~~l~-~~~~~~y~c~a~n~~g~~~~  114 (616)
                              ......|.|.++. +.|.|.|.|.|.|..|....
T Consensus        61 --------~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~   94 (101)
T d3b5ha1          61 --------SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQA   94 (101)
T ss_dssp             --------ETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEE
T ss_pred             --------CCCEEEEEEeccccccCCEEEEEEEEECCCEEEE
Confidence                    1224579999998 57999999999999996643

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6e-12  Score=93.16  Aligned_cols=81  Identities=21%  Similarity=0.336  Sum_probs=68.9

Q ss_pred             CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCC
Q psy12426        412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG  490 (616)
Q Consensus       412 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G  490 (616)
                      +|.++.+..++.+++.|+|.+|..    .+.+|.|+|+...+ .+...........+++|.+|.|++.|.|+|+|+|..|
T Consensus         2 pP~~l~~~~v~~~si~l~W~~p~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g   77 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTPPNV----QLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTL   77 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEECCSS----CCSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             CCCCEEEEEecCCEEEEEEEccce----eccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCCC
Confidence            578999999999999999997643    47789999988766 4544456677788999999999999999999999999


Q ss_pred             CCCCCC
Q psy12426        491 PGEPSK  496 (616)
Q Consensus       491 ~g~~s~  496 (616)
                      .|+++.
T Consensus        78 ~s~~~~   83 (90)
T d1fnha1          78 TSRPAQ   83 (90)
T ss_dssp             ECCCEE
T ss_pred             CcCCEe
Confidence            998764

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=1.8e-11  Score=93.05  Aligned_cols=87  Identities=25%  Similarity=0.335  Sum_probs=68.0

Q ss_pred             CCCCCCCCEEE----EecCCeEEEEecCCCC---CCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEE
Q psy12426        409 RPDRPGQPTVT----DWGKDHVDLEWTPPKK---DGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYE  480 (616)
Q Consensus       409 ~p~~p~~~~~~----~~~~~~v~l~W~~p~~---~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~  480 (616)
                      .|++|.++.+.    ....+++.|+|++|..   ..+..+..|+|+|+..+. .|......  ..+.+++.+|.|++.|.
T Consensus         2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~   79 (103)
T d1f6fb2           2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTG--HQTQFKVFDLYPGQKYL   79 (103)
T ss_dssp             CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEEE--TCSEEEECCCCTTCEEE
T ss_pred             CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeeccc--ceeEEEeCCCCcceEEE
Confidence            47888888764    3466789999998753   344567899999998887 67665443  46799999999999999


Q ss_pred             EEEEEEcCCCC-CCCCCC
Q psy12426        481 FRVIAVNKGGP-GEPSKA  497 (616)
Q Consensus       481 ~~v~a~n~~G~-g~~s~~  497 (616)
                      |||+|.|..|. |++|..
T Consensus        80 ~rVra~~~~G~wS~wS~~   97 (103)
T d1f6fb2          80 VQTRCKPDHGYWSRWSQE   97 (103)
T ss_dssp             EEEEEEESSSCCCCCCCC
T ss_pred             EEEEEEeCCCCCCCCcCc
Confidence            99999999885 776654

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7.4e-12  Score=92.87  Aligned_cols=81  Identities=20%  Similarity=0.363  Sum_probs=68.7

Q ss_pred             CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCC
Q psy12426        412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG  490 (616)
Q Consensus       412 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G  490 (616)
                      +|.++++..++.+++.|+|.+|.   +..+.+|.|+|+..++ .+.....+......++|.+|.|++.|.|+|+|++..|
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   79 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQH   79 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT---TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTE
T ss_pred             cCCceEEEEeCCCEEEEEEEecC---CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCCC
Confidence            67899999999999999999763   2358899999998776 4555566677889999999999999999999999999


Q ss_pred             CCCCC
Q psy12426        491 PGEPS  495 (616)
Q Consensus       491 ~g~~s  495 (616)
                      .|++.
T Consensus        80 ~S~p~   84 (91)
T d1fnfa2          80 ESTPL   84 (91)
T ss_dssp             ECCCE
T ss_pred             CCCCE
Confidence            87643

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=5.4e-12  Score=95.36  Aligned_cols=84  Identities=19%  Similarity=0.322  Sum_probs=68.3

Q ss_pred             ceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCc--EEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDR--FKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      +..+..|+++.|.|.+.|.|.|.+.|++++..+.....  ...........|.|.++...|.|.|+|.|.|..|.....+
T Consensus        14 ~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   93 (100)
T d1qz1a3          14 NATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASI   93 (100)
T ss_dssp             EEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEE
Confidence            34567899999999999999999999999998764422  2222334456999999999999999999999999988888


Q ss_pred             EEEEec
Q psy12426        303 KVTVLD  308 (616)
Q Consensus       303 ~l~v~~  308 (616)
                      .|.|..
T Consensus        94 ~l~V~~   99 (100)
T d1qz1a3          94 HLKVFA   99 (100)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            888764

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1e-11  Score=92.22  Aligned_cols=82  Identities=20%  Similarity=0.317  Sum_probs=66.2

Q ss_pred             CCCCCCCEEEEecC-CeEEEEecCCCCCCCCcceeEEEEEeeCCC-C-ceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        410 PDRPGQPTVTDWGK-DHVDLEWTPPKKDGGSPISQYIIEKKPKYG-P-WEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       410 p~~p~~~~~~~~~~-~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~-~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      +++|.++++..... +++.|+|.+|..   ..+.+|+|+|+..++ . ......++++..+++|.+|.|++.|.|+|.|+
T Consensus         2 ~~PP~~l~v~~~~~ts~i~v~W~~p~~---~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~   78 (94)
T d1fnfa1           2 LSPPTNLHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTV   78 (94)
T ss_dssp             CCCCEEEEEEECSSSSCEEEEEECCSC---SSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEEE
T ss_pred             CCcCcCcEEEEecCCCEEEEEeeCCCC---CCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEEE
Confidence            46788999988765 459999997632   248999999998765 3 34445667788999999999999999999999


Q ss_pred             cCCCCCCC
Q psy12426        487 NKGGPGEP  494 (616)
Q Consensus       487 n~~G~g~~  494 (616)
                      |..|.|.+
T Consensus        79 ~~~g~s~p   86 (94)
T d1fnfa1          79 KDDKESVP   86 (94)
T ss_dssp             ETTEECCC
T ss_pred             cCCCEeCC
Confidence            99998754

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.1e-13  Score=98.76  Aligned_cols=84  Identities=11%  Similarity=0.126  Sum_probs=66.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      .|.|... +.+..+.+|+.+.|.|.+.|.|.|.|+|+|++..+...-.+                              .
T Consensus         2 ~P~i~~~-~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~------------------------------~   50 (92)
T d2ifga1           2 VPTLKVQ-VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK------------------------------S   50 (92)
T ss_dssp             CCEEEEE-CCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC------------------------------C
T ss_pred             CCEEEEe-CCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeee------------------------------e
Confidence            4777644 78899999999999999999999999999999876521100                              0


Q ss_pred             cCCCCCceEecCcccCCeE-EEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQY-EFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~-~y~c~a~n~~g~~~~~  115 (616)
                      .......|.|.++...|.| .|.|.|.|..|....+
T Consensus        51 ~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s   86 (92)
T d2ifga1          51 GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVS   86 (92)
T ss_dssp             CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEE
T ss_pred             eeccceeEEEccccccccceEEEEEEEcCCCEEEEE
Confidence            0223457999999999999 6999999999987655

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=2e-12  Score=102.13  Aligned_cols=89  Identities=24%  Similarity=0.356  Sum_probs=68.9

Q ss_pred             CCCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-C-------ceEe--------EeecCCccEEEc
Q psy12426        407 FGRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-P-------WEKA--------CIVPANITATSV  470 (616)
Q Consensus       407 ~~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~-------~~~~--------~~~~~~~~~~~l  470 (616)
                      ...|++|.++.+.. +.+++.|+|.+|..+++ +|++|.|+|+..+. .       +...        ..+.+....++|
T Consensus         5 ~~~P~aP~~v~v~~-~~~si~l~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (123)
T d1wfta_           5 SSGPGAPSTVRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAH   82 (123)
T ss_dssp             SSCCCCCEEEEEEE-CSSEEEEEEECCSSCCS-SCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCC
T ss_pred             CCCCcCCcccEEEe-CCCEEEEEecCchhcCC-ceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEE
Confidence            46788999998865 68899999998876655 79999999987654 1       1110        112333466788


Q ss_pred             CCCCCCCeEEEEEEEEcCCCCCCCCCC
Q psy12426        471 PDLKEGEEYEFRVIAVNKGGPGEPSKA  497 (616)
Q Consensus       471 ~~L~p~t~Y~~~v~a~n~~G~g~~s~~  497 (616)
                      .+|.|++.|.|||+|.|..|.|++|..
T Consensus        83 ~~L~p~t~Y~frV~A~N~~G~Gp~S~~  109 (123)
T d1wfta_          83 IDYTSRPAIVFRISAKNEKGYGPATQI  109 (123)
T ss_dssp             CBCSSSCEEEEEEEEBSSSSBCCCEEE
T ss_pred             cCCCCCCEEEEEEEEecCCcCCCCCCc
Confidence            999999999999999999999988764

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=7.7e-12  Score=93.09  Aligned_cols=81  Identities=23%  Similarity=0.332  Sum_probs=67.0

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEe--EeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKA--CIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~--~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      ++|.++.+..++.+++.|+|.+|..    .+.+|.|+|+..++ .+...  ....++..+++|.+|.|++.|.|+|+|+|
T Consensus         2 daP~~l~v~~~~~~sv~v~W~~p~~----~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   77 (92)
T d1tdqa2           2 DAPKNLRVGSRTATSLDLEWDNSEA----EAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVM   77 (92)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCSS----CCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEE
T ss_pred             ccCcCCEEEEecCCEEEEEEEecCC----cccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEe
Confidence            4678999999999999999997642    58899999998765 33322  33456678999999999999999999999


Q ss_pred             CCCCCCCC
Q psy12426        488 KGGPGEPS  495 (616)
Q Consensus       488 ~~G~g~~s  495 (616)
                      ..|.|+++
T Consensus        78 ~~g~s~p~   85 (92)
T d1tdqa2          78 NSKQSIPA   85 (92)
T ss_dssp             TTEECCCE
T ss_pred             CCCEecCE
Confidence            99998765

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.26  E-value=1.2e-11  Score=90.62  Aligned_cols=81  Identities=21%  Similarity=0.384  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG  490 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G  490 (616)
                      ++|.++++..++.+++.|+|.+|..    .+.+|.|+|+..+..+.. ..++.+...++|.+|.|++.|.|+|+|++..|
T Consensus         1 DaP~~l~v~~~t~~sv~v~W~~p~~----~~~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~   75 (87)
T d1qr4a1           1 DNPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSGKKNE-MEIPVDSTSFILRGLDAGTEYTISLVAEKGRH   75 (87)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECCSS----CCSEEEEEEECTTCCEEE-EEECTTCSEEEEESCCSSCEEEEEEEEESSSC
T ss_pred             CcCcCcEEEEecCCEEEEEEECCCC----CcceeEEEeecCCcceeE-EeCCCCcCEEEECCCCcCCEEEEEEEEEcCCC
Confidence            4688999999999999999997642    488999999987754333 35567789999999999999999999999999


Q ss_pred             CCCCCC
Q psy12426        491 PGEPSK  496 (616)
Q Consensus       491 ~g~~s~  496 (616)
                      .|+++.
T Consensus        76 ~s~~~~   81 (87)
T d1qr4a1          76 KSKPTT   81 (87)
T ss_dssp             BCCCEE
T ss_pred             CccCEE
Confidence            987653

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.26  E-value=4.1e-12  Score=96.64  Aligned_cols=83  Identities=10%  Similarity=0.037  Sum_probs=64.7

Q ss_pred             cCCCCCCceEecCCCeEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccC
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      +..++++.+.|.+|+.+.|.|.+ .|.|.|.|+|+|+|..+.....+.-..                            .
T Consensus         6 F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~----------------------------~   57 (105)
T d1cs6a2           6 FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV----------------------------S   57 (105)
T ss_dssp             CCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE----------------------------C
T ss_pred             ccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeee----------------------------e
Confidence            44556678999999999999996 799999999999998775422211110                            2


Q ss_pred             CCCCceEecCcccCCeEEEEEEEEcCCCCCCC
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEP  114 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~  114 (616)
                      ...++|.|.++.+.|.|.|+|.|.|..|....
T Consensus        58 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   89 (105)
T d1cs6a2          58 QTTGNLYIAKTEASDLGNYSCFATSHIDFITK   89 (105)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             cCCCEEeecccccccCcEEEEEEEECCCCEEE
Confidence            23568999999999999999999998886543

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.3e-11  Score=88.94  Aligned_cols=87  Identities=17%  Similarity=0.289  Sum_probs=69.3

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      .|++|.+|++..++.+++.|+|.+|..   ..+..|.|+|+..+. .|.....  .....++|.+|.|++.|.|||+|.+
T Consensus         2 ~P~~P~nl~v~~~~~~~v~l~W~~p~~---~~~~~y~v~y~~~~~~~~~~~~~--~~~~~~~~~~L~p~t~Y~frVRa~~   76 (95)
T d2b5ic1           2 IPWAPENLTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSV--DYRHKFSLPSVDGQKRYTFRVRSRF   76 (95)
T ss_dssp             ECCCCEEEEEEEEETTEEEEEEECSSC---STTCEEEEEEEETTCSSCEEEEE--CSSCEEEECSCCTTSCEEEEEEEEC
T ss_pred             CCcCCCCCEEEEEeCCEEEEEECCCCC---ceeEEEEEEEEcCCCceeeEeee--cccceeEcCCCCCCCEEEEEEEEee
Confidence            488999999999999999999997643   246789999998877 6665433  4467999999999999999999997


Q ss_pred             CCCC---CCCCCCCCC
Q psy12426        488 KGGP---GEPSKASAP  500 (616)
Q Consensus       488 ~~G~---g~~s~~~~~  500 (616)
                      ..+.   |.+|+.+..
T Consensus        77 ~~~~~~~g~WSeWS~p   92 (95)
T d2b5ic1          77 NPLCGSAQHWSEWSHP   92 (95)
T ss_dssp             CSSSCCCCCCCCCCCC
T ss_pred             CCCCCCCCCccCCCCc
Confidence            7653   445655544

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.25  E-value=5e-12  Score=94.72  Aligned_cols=82  Identities=26%  Similarity=0.339  Sum_probs=68.2

Q ss_pred             ceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEE-EEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK-IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                      ...+..|+++.|.|.+.|.|.|.+.|++++..+....+.. ........+|.|.+++..|.|.|+|.|.|..|....++.
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   93 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   93 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            3568899999999999999999999999999987554322 222233458999999999999999999999998888888


Q ss_pred             EEE
Q psy12426        304 VTV  306 (616)
Q Consensus       304 l~v  306 (616)
                      |.|
T Consensus        94 l~V   96 (97)
T d3dara1          94 LDV   96 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            776

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.7e-12  Score=98.12  Aligned_cols=93  Identities=15%  Similarity=0.074  Sum_probs=68.4

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||.|-. ...+..|.+|++++|.|.+ .|+|.|.++|+|+|..+.....|.....+..                     .
T Consensus         2 PP~~p~-~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~---------------------~   59 (104)
T d1nbqa2           2 PPSKPT-VNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS---------------------Y   59 (104)
T ss_dssp             CCCCCC-CCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCC---------------------C
T ss_pred             CCcccc-cCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCc---------------------E
Confidence            677643 3556778999999999996 6899999999999998875433322111100                     0


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ........|.|.++...|.|.|+|.|.|..|....+
T Consensus        60 ~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s   95 (104)
T d1nbqa2          60 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS   95 (104)
T ss_dssp             CCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEEC
T ss_pred             EEeecccceEECCCCcccCcEEEEEEEECCCceEEE
Confidence            002234678999999999999999999999988665

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.9e-11  Score=89.39  Aligned_cols=85  Identities=20%  Similarity=0.256  Sum_probs=70.3

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec--CCceEEEecCCCCCCcEEEEEEEEcCCCCc-e
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-K  299 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~  299 (616)
                      |.++.+..|+.+.|.|.+.+.|.+.+.|++++..+....+..+...  .....|.|.+++..|.|.|+|.|.|..|.. +
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            4678899999999999999999999999999999876665544433  234579999999999999999999999975 5


Q ss_pred             eeEEEEEe
Q psy12426        300 GTAKVTVL  307 (616)
Q Consensus       300 ~~~~l~v~  307 (616)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            56666654

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.3e-12  Score=91.49  Aligned_cols=68  Identities=15%  Similarity=0.057  Sum_probs=57.3

Q ss_pred             CceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceE
Q psy12426         10 GDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGK   89 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~   89 (616)
                      .+..|.+|++++|.|.+.|.|.|.|+|++++..+..                                      ....|.
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~--------------------------------------~~~~l~   48 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ--------------------------------------GGKTLS   48 (84)
T ss_dssp             CSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE--------------------------------------ESSEEE
T ss_pred             CCeEEECCCeEEEEEEeEcCCchheEEEeeccccee--------------------------------------eeeeee
Confidence            356789999999999999999999999998876541                                      134788


Q ss_pred             ecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         90 VLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        90 i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      |.++...|+|.|.|.|.|..|.....
T Consensus        49 i~~v~~~DsG~Y~C~a~N~~g~~~~~   74 (84)
T d2nxyb2          49 VSQLELQDSGTWTCTVLQNQKKVEFK   74 (84)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eeecccccccEEEEEEEeCCCEEEEE
Confidence            99999999999999999998865443

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.9e-11  Score=91.20  Aligned_cols=87  Identities=28%  Similarity=0.369  Sum_probs=70.8

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      |.++..+........+++.|+|.+|..+++..|..|.|+++..+...|..........+.+.+|.+++.|.|+|+|.|..
T Consensus         2 P~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV~A~N~~   81 (97)
T d2crza1           2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKM   81 (97)
T ss_dssp             CCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCEEEEEESCSEEEEESCCTTCEEEECCEEECSS
T ss_pred             cCcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCceeEeecCCceEEEEcCCCCCEEEEEEEEEecCC
Confidence            44444432122355689999999888887888999999999888888887777677889999999999999999999999


Q ss_pred             cCCCCcc
Q psy12426        390 GESLPLV  396 (616)
Q Consensus       390 g~~~~~~  396 (616)
                      |.|.++.
T Consensus        82 G~s~~S~   88 (97)
T d2crza1          82 GFGPFSE   88 (97)
T ss_dssp             CBCCCCC
T ss_pred             eEcCCcC
Confidence            9988753

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-12  Score=94.35  Aligned_cols=78  Identities=8%  Similarity=0.051  Sum_probs=62.6

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecC-CeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPV-PHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~-p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +|.|.. ++..+.+.+|+.+.|.|.+.|.|. +.|+|+|+|..+.....+...                           
T Consensus         6 ~P~~~~-~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~---------------------------   57 (93)
T d1n26a1           6 CPAQEV-ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG---------------------------   57 (93)
T ss_dssp             CCCCCC-CTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE---------------------------
T ss_pred             CCcEEe-CCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec---------------------------
Confidence            477774 588999999999999999998775 589999999988754443322                           


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                          ....|.|.++...|+|.|+|.|.|..+
T Consensus        58 ----~~~~L~I~~v~~~D~G~Y~C~a~n~~~   84 (93)
T d1n26a1          58 ----MGRRLLLRSVQLHDSGNYSCYRAGRPA   84 (93)
T ss_dssp             ----ESSEEEECSCCGGGCEEEEEESSSSCS
T ss_pred             ----CCCEEEECCCChhcCEEEEEEECCccc
Confidence                145799999999999999999976443

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=1.8e-11  Score=89.30  Aligned_cols=81  Identities=28%  Similarity=0.413  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG  490 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G  490 (616)
                      ++|.++++..++.+++.|+|.+|..    .+.+|.|+|+..++.... .......+.+.|.+|.|++.|.|+|+|++..|
T Consensus         2 ~~P~nl~v~~~~~~s~~l~W~~p~~----~~~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~   76 (86)
T d1tdqa3           2 DSPRDLMVTASSETSISLIWTKASG----PIDHYRITFTPSSGISSE-VTVPRDRTSYTLTDLEPGAEYIISITAERGRQ   76 (86)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECCCS----CCSEEEEEEECSSSCCEE-EEEESSCSEEEECCCCTTCCEEEEEEEEETTE
T ss_pred             ccCCCCEEEEecCCEEEEEEeCCCC----CccceEEEEecccccceE-EEeCCCccEEEECCCccccEEEEEEEEEcCCC
Confidence            4788999999999999999997642    588999999987653332 34456788999999999999999999999999


Q ss_pred             CCCCCC
Q psy12426        491 PGEPSK  496 (616)
Q Consensus       491 ~g~~s~  496 (616)
                      .|.++.
T Consensus        77 ~s~p~~   82 (86)
T d1tdqa3          77 QSLEST   82 (86)
T ss_dssp             ECCCEE
T ss_pred             EECCEE
Confidence            887653

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.8e-11  Score=92.44  Aligned_cols=88  Identities=26%  Similarity=0.359  Sum_probs=64.3

Q ss_pred             CCCCCCCCEEE----EecCCeEEEEecCCCC---CCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEE
Q psy12426        409 RPDRPGQPTVT----DWGKDHVDLEWTPPKK---DGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYE  480 (616)
Q Consensus       409 ~p~~p~~~~~~----~~~~~~v~l~W~~p~~---~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~  480 (616)
                      .|++|.++.+.    ..+.+++.|+|.+|..   ..+..+..|+++|+..++ .|.....  .....++|.+|.|++.|.
T Consensus         2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~   79 (104)
T d3d48r2           2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFA--GQQTEFKILSLHPGQKYL   79 (104)
T ss_dssp             CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEEE--ETCSEEEECC--CCCEEE
T ss_pred             CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeecc--ccccEEEECCCCCCCEEE
Confidence            57888888875    4467789999998753   334456789999988876 5554433  446789999999999999


Q ss_pred             EEEEEEcCCCC-CCCCCCC
Q psy12426        481 FRVIAVNKGGP-GEPSKAS  498 (616)
Q Consensus       481 ~~v~a~n~~G~-g~~s~~~  498 (616)
                      |||+|.|..|. |++|...
T Consensus        80 ~rVrA~n~~G~ws~wS~~~   98 (104)
T d3d48r2          80 VQVRCKPDHGYWSAWSPAT   98 (104)
T ss_dssp             EEEEEEESSSCCCCCCCCE
T ss_pred             EEEEEEeCCCCCCCCcCCE
Confidence            99999999996 8887654

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.3e-11  Score=90.43  Aligned_cols=81  Identities=19%  Similarity=0.267  Sum_probs=67.9

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCC
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGG  490 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G  490 (616)
                      ++|.++.+..++.+++.|+|.+|..    .+.+|.|.|+..++.+.. .....+..+++|.+|.|++.|.|+|+|+|..|
T Consensus         3 ~~P~~l~~~~~~~~sv~l~W~~p~~----~~~~Y~v~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   77 (93)
T d2cuma1           3 EAPRDLEAKEVTPRTALLTWTEPPV----RPAGYLLSFHTPGGQTQE-ILLPGGITSHQLLGLFPSTSYNARLQAMWGQS   77 (93)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECCSS----CCSEEEEEEECTTSCEEE-EEECSSCSEEEECSCCTTCEEEEEEEEEBTTB
T ss_pred             CcCCCCEEEEeCCCEEEEEEEcccc----ccccEEEEEEccccccEE-EEECCCccEEEEeCccCCCEEEEEEEEEeCCC
Confidence            4678899999999999999997642    588999999987654433 35567788999999999999999999999999


Q ss_pred             CCCCCC
Q psy12426        491 PGEPSK  496 (616)
Q Consensus       491 ~g~~s~  496 (616)
                      .|+++.
T Consensus        78 ~s~~~~   83 (93)
T d2cuma1          78 LLPPVS   83 (93)
T ss_dssp             CCCCEE
T ss_pred             CCCCEE
Confidence            987653

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=9.2e-12  Score=96.55  Aligned_cols=90  Identities=12%  Similarity=0.030  Sum_probs=65.0

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeec---CCeeeeeeCCeeeee---ccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEP---VPHVDWRAGGNPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P---~p~v~W~~~~~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      ++.+.|+++.|.+|++|+|.|.+.|.|   .|.|.|+|++.....   ...++-....                      
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~----------------------   59 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETF----------------------   59 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEE----------------------
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccce----------------------
Confidence            466789999999999999999999999   589999999754321   1111111000                      


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ..........|.|.++.+.|.|.|.|.|.|..|.....
T Consensus        60 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   97 (113)
T d2dava1          60 ERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCS   97 (113)
T ss_dssp             ETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCEEEEC
T ss_pred             eeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCEEEEE
Confidence            00001113468999999999999999999999976555

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.22  E-value=1.6e-12  Score=95.45  Aligned_cols=75  Identities=24%  Similarity=0.340  Sum_probs=64.1

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      .++++++.|.+|+++.|.|.+ +.|.|.+.|+|||+.+..+++|.-..                            ....
T Consensus         5 ~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~----------------------------~~~~   55 (89)
T d1tiua_           5 EKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIE----------------------------DGKK   55 (89)
T ss_dssp             SBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEE----------------------------CSSC
T ss_pred             EcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEe----------------------------ecee
Confidence            367999999999999999997 58999999999999998777776553                            2235


Q ss_pred             CceEecCcccCCeEEEEEEEEcCC
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~  109 (616)
                      .+|.|.++.+.|+|.|.|.|.|..
T Consensus        56 ~~L~I~~~~~~D~G~Y~c~a~n~~   79 (89)
T d1tiua_          56 HILILHNCQLGMTGEVSFQAANAK   79 (89)
T ss_dssp             EEEECCSCCSCCCSEECCBCSSCB
T ss_pred             EEEEEcCCChhcCEEEEEEECceE
Confidence            689999999999999999987644

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.4e-11  Score=93.78  Aligned_cols=85  Identities=11%  Similarity=0.072  Sum_probs=63.4

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeec-CCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEP-VPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ++.+.++++.|.+|+++.|.|.+.|.| .|.|+|+|+++.+..  ...+.-...+                         
T Consensus         5 ~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~-------------------------   59 (104)
T d2aw2a1           5 LYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEE-------------------------   59 (104)
T ss_dssp             ECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEEC-------------------------
T ss_pred             EEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEec-------------------------
Confidence            344668999999999999999999999 589999999987653  2221111000                         


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                      .......|.|.++...|.|.|+|.|.|..|...
T Consensus        60 ~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   92 (104)
T d2aw2a1          60 KNISFFILHFEPVLPNDNGSYRCSANFQSNLIE   92 (104)
T ss_dssp             SSCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCceEEEEEEccccHHHCCeEEEEEEcCCCeEE
Confidence            011123689999999999999999999998643

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=8.7e-12  Score=91.93  Aligned_cols=81  Identities=16%  Similarity=0.169  Sum_probs=62.8

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      |...++..+.+.+|+.+.|.|.+.|.|.|.|+|+++++.+. .+.-..                              ..
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~-~~~~~~------------------------------~~   51 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-NGKVTN------------------------------EG   51 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC-SSEEEE------------------------------ET
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccce-eeeeee------------------------------ec
Confidence            34455566778899999999999999999999999887654 222111                              11


Q ss_pred             CCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ....|.|.++...|.|.|.|.|.|..|....+
T Consensus        52 ~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~   83 (90)
T d1vcaa2          52 TTSTLTMNPVSFGNEHSYLCTATCESRKLEKG   83 (90)
T ss_dssp             TEEEEEESSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred             CCcEEEEecccccccceEEEEEEeCCCEEEEE
Confidence            24579999999999999999999999965443

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.7e-13  Score=102.92  Aligned_cols=93  Identities=20%  Similarity=0.210  Sum_probs=73.1

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceE--eEeecCCccEEEcCCCCCCCeEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEK--ACIVPANITATSVPDLKEGEEYEFRVI  484 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~--~~~~~~~~~~~~l~~L~p~t~Y~~~v~  484 (616)
                      .+|+.|.++++..++.+++.|+|.+|..+++ .|.+|+|+|+..++ .+..  ..........+.+.+|.|+ +|.|||+
T Consensus         3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~~~ng-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-tY~~rV~   80 (102)
T d2dtge1           3 KADDIVGPVTHEIFENNVVHLMWQEPKEPNG-LIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIR   80 (102)
T ss_dssp             CCCCCCCCCCCCSSSSSCCCCCCCCCCSCSS-CEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCC
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEEeCCCCcc-eEEEeeeEEEecCCCCceeeeeeecccceEEEEEecccee-eEEEEEE
Confidence            4677788888888899999999998876655 69999999988765 2221  1233455678999999997 5999999


Q ss_pred             EEcCCCCCCCCCCCCCEE
Q psy12426        485 AVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       485 a~n~~G~g~~s~~~~~~~  502 (616)
                      |.|..|.|++|.+..+.+
T Consensus        81 A~n~~G~g~~S~~v~f~~   98 (102)
T d2dtge1          81 ATSLAGNGSWTEPTYFYV   98 (102)
T ss_dssp             EEETTBCCCCCCCCEECC
T ss_pred             EEcCCccCCCCCCEEEEc
Confidence            999999999998765543

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=4.9e-11  Score=87.75  Aligned_cols=84  Identities=20%  Similarity=0.272  Sum_probs=68.3

Q ss_pred             eeccCCcceEEEcCCeEEEEEEEe-eecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        218 INRDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       218 ~~~~~~~~~~v~~g~~~~l~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      +....+....+.+|+++.|.|.+. +.|.+.+.|++++..+.... ... ..+   .|.|.++...|+|.|+|.|.|..|
T Consensus         4 v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~-~~~-~~~---~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1gl4b_           4 VTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AMD-FNG---ILTIRNVQPSDAGTYVCTGSNMFA   78 (89)
T ss_dssp             EEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT-EEE-ETT---EEEECSCCGGGCEEEEEEEECSSC
T ss_pred             EEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccc-cEe-ece---EEEEecCCcccCEEEEEEEEECCC
Confidence            334556778899999999999997 56888999999988765443 222 222   899999999999999999999999


Q ss_pred             CceeeEEEEE
Q psy12426        297 TDKGTAKVTV  306 (616)
Q Consensus       297 ~~~~~~~l~v  306 (616)
                      ....++.|.|
T Consensus        79 ~~~~~~~l~V   88 (89)
T d1gl4b_          79 MDQGTATLHV   88 (89)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            8888887776

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=2.3e-11  Score=90.94  Aligned_cols=78  Identities=8%  Similarity=0.095  Sum_probs=63.1

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.|.   +.+..|.+|++++|+|.+.| |.+.|.|+|+|+.|.....+.-.                             
T Consensus         6 P~i~---~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~-----------------------------   52 (96)
T d1l6za2           6 PFLQ---VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLS-----------------------------   52 (96)
T ss_dssp             CCEE---CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEE-----------------------------
T ss_pred             CeEE---cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceecc-----------------------------
Confidence            5554   56788999999999999876 55799999999998865555432                             


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                       .....|.|.++...|.|.|+|.|.|..|...
T Consensus        53 -~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~   83 (96)
T d1l6za2          53 -QNNSILRIDPIKREDAGEYQCEISNPVSVRR   83 (96)
T ss_dssp             -TTTTEEEECSCCGGGCEEEEEEEESSSCCEE
T ss_pred             -CCceEEEEeccchhhceEEEEEEEeCCCCeE
Confidence             1246799999999999999999999888553

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.9e-11  Score=92.62  Aligned_cols=100  Identities=25%  Similarity=0.473  Sum_probs=75.2

Q ss_pred             EEEEEecCCCCCCCCc-cceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc--cccceEEeccccCCCe
Q psy12426        302 AKVTVLDIPSPPEGPL-KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTYTRAENLIEGHD  378 (616)
Q Consensus       302 ~~l~v~~~p~~p~~~~-~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~  378 (616)
                      +.+.+.+.|.+|.++. .+.....+++.|+|.+|.+ ++.+|.+|.|+++..+...+.....  .....+.+.+|.+++.
T Consensus         3 ~~l~v~~~P~~P~~p~~~~~~~~~~sv~l~W~~P~~-~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   81 (108)
T d1wf5a1           3 AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARS   81 (108)
T ss_dssp             CCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCCCC-CSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEESCCTTCE
T ss_pred             cccEEecCCCCCCCCEEEEEeccCCEEEEEEECCCC-CCCccEEEEEEEEeccCCceEEeeeecCCccEEEECCCCCCCE
Confidence            4566778888888752 2334667899999998754 6678999999998765543333322  4456899999999999


Q ss_pred             EEEEEEEEecCcCCCCccccCCEE
Q psy12426        379 YNFRVKAVNKIGESLPLVCQSPIT  402 (616)
Q Consensus       379 y~~~v~a~n~~g~~~~~~~s~~~~  402 (616)
                      |.|+|.|.|..|.|.++..+..++
T Consensus        82 Y~frV~A~N~~G~s~~S~~~~~~t  105 (108)
T d1wf5a1          82 YQFRLCAVNDVGKGQFSKDTERVS  105 (108)
T ss_dssp             EEEEEEEEESSCEEEECCCCSCEE
T ss_pred             EEEEEEEEcCCcCCCCcCCcCCEE
Confidence            999999999999988876554443

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.20  E-value=5e-11  Score=91.79  Aligned_cols=92  Identities=22%  Similarity=0.227  Sum_probs=70.0

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecc----cC---------cEEEEecCCceEEEecCCCC
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS----KD---------RFKIVNDDKSTKLKVFDSKR  281 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~----~~---------~~~~~~~~~~~~l~i~~l~~  281 (616)
                      .|.|....|.+..+..|+++.|.|.+.|.|.|.+.|++++.....    ..         ............|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            466655567889999999999999999999999999987643211    10         00111122346899999999


Q ss_pred             CCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        282 GDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       282 ~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      .|.|.|+|.|.|..|....++.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999988888876

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.1e-11  Score=91.44  Aligned_cols=84  Identities=18%  Similarity=0.341  Sum_probs=68.6

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC---------CceEeEeecCCccEEEcCCCCCCCe
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG---------PWEKACIVPANITATSVPDLKEGEE  478 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~---------~~~~~~~~~~~~~~~~l~~L~p~t~  478 (616)
                      +.|.+|.++++..++.+++.|+|.+|..    ++.+|.|+|+..+.         .........+...+++|.+|.|++.
T Consensus         2 g~Pp~~~~l~v~~~t~~sv~v~W~pp~~----~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~   77 (101)
T d2cuia1           2 GSRPRLSQLSVTDVTTSSLRLNWEAPPG----AFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTL   77 (101)
T ss_dssp             CCCCCCCCCEEESCCSSCEEEECCCCTT----SCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCE
T ss_pred             CCccCCCCcEEEEECCCEEEEEEEeccc----cccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCE
Confidence            4677889999999999999999997532    58899999987653         1122234566788999999999999


Q ss_pred             EEEEEEEEcCCCCCCCC
Q psy12426        479 YEFRVIAVNKGGPGEPS  495 (616)
Q Consensus       479 Y~~~v~a~n~~G~g~~s  495 (616)
                      |.|+|+|+|..|.|+++
T Consensus        78 Y~~~V~a~~~~g~g~~~   94 (101)
T d2cuia1          78 YSLTLYGLRGPHKADSI   94 (101)
T ss_dssp             EEEEEEEECSSSEEEEE
T ss_pred             EEEEEEEEeCCcEeCCe
Confidence            99999999999998754

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.1e-11  Score=94.83  Aligned_cols=89  Identities=9%  Similarity=0.166  Sum_probs=63.7

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      ..+.++.+.+|+++.|.|.+.|.|.|.|+|+|++..+...-.+.-....   .....+                 .....
T Consensus         9 ~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~---~~~~~~-----------------~~~~~   68 (105)
T d1nbqa1           9 SSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITA---SYEDRV-----------------TFLPT   68 (105)
T ss_dssp             CSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECT---TTTTTC-----------------EEETT
T ss_pred             CCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeec---ccccee-----------------eecCc
Confidence            3467888999999999999999999999999998776531111000000   000000                 11135


Q ss_pred             ceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.++...|.|.|+|.|.|..|.....
T Consensus        69 ~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~   97 (105)
T d1nbqa1          69 GITFKSVTREDTGTYTCMVSEEGGNSYGE   97 (105)
T ss_dssp             EEECSCCCTTSCSEEEEEEEETTSSCEEC
T ss_pred             eEEEecccccceeeEEEEEEECCCCEEEE
Confidence            79999999999999999999999977544

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.3e-11  Score=96.48  Aligned_cols=94  Identities=20%  Similarity=0.179  Sum_probs=73.4

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCC-CCCCcceeEEEEEeeCCC--------CceEeEeecCCccEEEcCCCCCCCeE
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKK-DGGSPISQYIIEKKPKYG--------PWEKACIVPANITATSVPDLKEGEEY  479 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~-~~~~~i~~Y~i~~~~~~~--------~~~~~~~~~~~~~~~~l~~L~p~t~Y  479 (616)
                      ++.+|.++.+..++.+++.|+|++|.. ..+..+..|.+.++....        ..............++|.+|.|++.|
T Consensus        14 P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y   93 (125)
T d1uena_          14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHY   93 (125)
T ss_dssp             CCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCEE
T ss_pred             CCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCCEE
Confidence            446788999999999999999998753 334568889998876432        11122345566789999999999999


Q ss_pred             EEEEEEEcCCCCCCCCCCCCCEE
Q psy12426        480 EFRVIAVNKGGPGEPSKASAPVT  502 (616)
Q Consensus       480 ~~~v~a~n~~G~g~~s~~~~~~~  502 (616)
                      .|+|+|.|..|.|++|.+..+.|
T Consensus        94 ~~~V~A~n~~G~g~~S~~~~~~T  116 (125)
T d1uena_          94 TLNVRVVNGKGEGPASPDRVFNT  116 (125)
T ss_dssp             EEEEEEEESSCEEEECCCEEEEC
T ss_pred             EEEEEEEeCCcccCCCCCEEEEC
Confidence            99999999999999988665444

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.7e-11  Score=91.51  Aligned_cols=84  Identities=12%  Similarity=-0.001  Sum_probs=70.1

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAV  486 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~  486 (616)
                      .+|++|.++++...+.+++.|+|.+|. +++. ..+|.|+|+..++ .|............+.+.+|.+++.|.|+|.|.
T Consensus         2 ~PP~~P~n~~~~~~~~~si~~~W~p~~-~~~~-~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~   79 (95)
T d1bqua1           2 LPPEKPKNLSCIVNEGKKMRCEWDGGR-ETHL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE   79 (95)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCS-CCSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEE
T ss_pred             cCcCCCeeeEEEEccCCEEEEEEeCcc-cCCC-ceEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEEE
Confidence            368999999999999999999999764 4444 4789999998876 555555556667788999999999999999999


Q ss_pred             cCCCCCC
Q psy12426        487 NKGGPGE  493 (616)
Q Consensus       487 n~~G~g~  493 (616)
                      |..|.|.
T Consensus        80 N~~G~s~   86 (95)
T d1bqua1          80 NALGKVT   86 (95)
T ss_dssp             ETTEEEE
T ss_pred             eCCcccc
Confidence            9999886

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7e-12  Score=92.32  Aligned_cols=78  Identities=15%  Similarity=0.282  Sum_probs=61.7

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeecc--ceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP--IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G--~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      ++.++++++.+.+|+++.|.|.+. .|.|.+.|+|+|+++..+.  .|....                            
T Consensus         2 ~i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~----------------------------   52 (90)
T d1x44a1           2 MVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRV----------------------------   52 (90)
T ss_dssp             CCSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEE----------------------------
T ss_pred             EEEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEE----------------------------
Confidence            345779999999999999999985 6889999999999887533  333321                            


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      ......|.|.++.+.|+|.|+|.|.|..+
T Consensus        53 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   81 (90)
T d1x44a1          53 EGKKHILIIEGATKADAAEYSVMTTGGQS   81 (90)
T ss_dssp             ETTEEEEEEEEECTTTCSEEEEEETTEEE
T ss_pred             eCCccEEEECccccccCEEEEEEEecceE
Confidence            12246799999999999999999987543

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.9e-11  Score=88.44  Aligned_cols=77  Identities=18%  Similarity=0.169  Sum_probs=65.1

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                      .+..+.+|++++|.|.+.|.|.|.+.|++++..+..+          ...|.|.++...|+|.|+|.|.|..|.......
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~----------~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~   76 (84)
T d2nxyb2           7 SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG----------GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID   76 (84)
T ss_dssp             CSSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE----------SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCeEEECCCeEEEEEEeEcCCchheEEEeecccceee----------eeeeeeeecccccccEEEEEEEeCCCEEEEEEE
Confidence            3456889999999999999999999999987554321          127899999999999999999999999888888


Q ss_pred             EEEecCC
Q psy12426        304 VTVLDIP  310 (616)
Q Consensus       304 l~v~~~p  310 (616)
                      +.|...|
T Consensus        77 v~V~~~~   83 (84)
T d2nxyb2          77 IVVLAFQ   83 (84)
T ss_dssp             ECEECCC
T ss_pred             EEEEecC
Confidence            8887654

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.1e-11  Score=92.88  Aligned_cols=91  Identities=13%  Similarity=0.049  Sum_probs=65.1

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeec---CCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEP---VPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P---~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      ++.+.|+++.+.+|++|+|.|.+.|.|   .|.|+|+|++.....  .+.+.......                    . 
T Consensus         6 ~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~--------------------~-   64 (110)
T d2avga1           6 LFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY--------------------D-   64 (110)
T ss_dssp             SEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEE--------------------E-
T ss_pred             EeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeee--------------------E-
Confidence            455679999999999999999999999   688999998864322  22211111000                    0 


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .........|.|.++++.|.|.|.|.|.|..|....+
T Consensus        65 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  101 (110)
T d2avga1          65 RASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSN  101 (110)
T ss_dssp             TTTTEEEEEEEEESCCTTCCEEEEEEEEETTEEEEEE
T ss_pred             EecccCEEEEEEeccCHHHCcEEEEEEEECCCeEEEE
Confidence            0001113479999999999999999999999987655

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=4.4e-11  Score=89.54  Aligned_cols=78  Identities=10%  Similarity=0.178  Sum_probs=59.8

Q ss_pred             CCCceEecCCCeEEEEEEEeeecC-CeeeeeeCC-eeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEPV-PHVDWRAGG-NPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P~-p~v~W~~~~-~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      .|.+..|.+|+.+.|.|.+.|.|. |.|+|+|++ ..+.. ...|.....                           ...
T Consensus         6 ~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~---------------------------~~~   58 (97)
T d1epfa1           6 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN---------------------------DDD   58 (97)
T ss_dssp             ESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEE---------------------------ETT
T ss_pred             ECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEee---------------------------cCc
Confidence            377899999999999999999985 799999954 44432 334433311                           112


Q ss_pred             CCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      ...|.|.++...|.|.|+|.|.|..|..
T Consensus        59 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   86 (97)
T d1epfa1          59 SSTLTIYNANIDDAGIYKCVVTAEDGTQ   86 (97)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             ceEEEcccCchhhceEEEEEEEeCCCcE
Confidence            4579999999999999999999998854

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=3e-11  Score=93.16  Aligned_cols=94  Identities=13%  Similarity=0.047  Sum_probs=63.5

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      ||.+-.- .....|.+|+++.|.|.+ .|+|.|.|+|+|++..+.....+.-...     .....               
T Consensus         2 PP~~p~~-~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~---------------   60 (110)
T d1f97a2           2 PPSKPTI-SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAF-----MNSSF---------------   60 (110)
T ss_dssp             CCCCCEE-ECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSC-----SSSCE---------------
T ss_pred             CCcccee-CCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEee-----cCceE---------------
Confidence            5655321 234468899999999997 4899999999999988764222110000     00000               


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ........|.|.+++..|.|.|.|.|.|..|....+
T Consensus        61 ~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s   96 (110)
T d1f97a2          61 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS   96 (110)
T ss_dssp             EECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEEC
T ss_pred             EEeecccceEECCCCccCCEEEEEEEEECCCcEEEE
Confidence            002235689999999999999999999999987655

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9e-11  Score=88.77  Aligned_cols=91  Identities=18%  Similarity=0.216  Sum_probs=73.5

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeec------ccCcEEEEecCCceEEEecCCCC-CCcEE
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITII------SKDRFKIVNDDKSTKLKVFDSKR-GDSGI  286 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~------~~~~~~~~~~~~~~~l~i~~l~~-~~~g~  286 (616)
                      ||.|. ..+....+.+|+.+.|.|.+.+.|.+ .+.|++++....      ...++.+...+..+.|.|.++.. .|.|.
T Consensus         2 PP~i~-~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           2 PPRVK-AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             SCCCE-ESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CceEE-EcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            56664 34567889999999999999999987 799999764321      23467777777788999999984 69999


Q ss_pred             EEEEEEcCCCCceeeEEEEE
Q psy12426        287 YTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       287 y~c~a~n~~g~~~~~~~l~v  306 (616)
                      |+|.|.|..|.....+.|.|
T Consensus        81 Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEE
Confidence            99999999999888887776

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.5e-11  Score=88.00  Aligned_cols=81  Identities=12%  Similarity=0.159  Sum_probs=67.0

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAK  303 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~  303 (616)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|.+++..+..+.   .........|.|.++...|.|.|+|.|.|..|....++.
T Consensus         9 ~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~   85 (90)
T d1vcaa2           9 SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (90)
T ss_dssp             SEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             CcEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEE
Confidence            44667899999999999999999999999877654332   223345568999999999999999999999998888888


Q ss_pred             EEEe
Q psy12426        304 VTVL  307 (616)
Q Consensus       304 l~v~  307 (616)
                      +.|.
T Consensus        86 v~V~   89 (90)
T d1vcaa2          86 VEIY   89 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.8e-11  Score=92.11  Aligned_cols=83  Identities=19%  Similarity=0.276  Sum_probs=67.5

Q ss_pred             ecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-----CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCCCCCC
Q psy12426        421 WGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-----PWEKACIVPANITATSVPDLKEGEEYEFRVIAVNKGGPGEPS  495 (616)
Q Consensus       421 ~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-----~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~g~~s  495 (616)
                      ++.++|.|+|++|.. + ..|.+|+|+|+..+.     .|...........+++|.+|.|++.|.|+|+|.|..|.|++|
T Consensus        27 ~s~tsi~v~W~~p~~-~-~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~~S  104 (120)
T d1ujta_          27 LTPTTVQVTWTVDRQ-P-QFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDS  104 (120)
T ss_dssp             CBTTEEEEEEEESSC-C-SSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCCCC
T ss_pred             eCCCeEEEEecCCCC-C-CcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcCCC
Confidence            578999999997643 3 469999999987643     566665556678899999999999999999999999999999


Q ss_pred             CCCCCEEecc
Q psy12426        496 KASAPVTCKP  505 (616)
Q Consensus       496 ~~~~~~~~~~  505 (616)
                      ......|..+
T Consensus       105 ~~~~~~T~e~  114 (120)
T d1ujta_         105 ESKTVRTTEE  114 (120)
T ss_dssp             CCEEEEECSS
T ss_pred             CCEEEEeCCC
Confidence            8665555543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.3e-11  Score=90.27  Aligned_cols=81  Identities=7%  Similarity=0.181  Sum_probs=61.4

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeecc-ceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRP-IWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G-~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +|.+...-.....|.+|+.+.|.|.+. .|.|.|+|+|||..|..++ .|.....                         
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~-------------------------   58 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESI-------------------------   58 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEE-------------------------
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeecc-------------------------
Confidence            455654423346799999999999985 5899999999999997543 4544421                         


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                         .....|.|.++...|.|.|.|.|.|..+
T Consensus        59 ---~~~~~L~I~~~~~~D~G~Y~c~a~n~~~   86 (94)
T d1pd6a_          59 ---GAKRTLTISQCSLADDAAYQCVVGGEKC   86 (94)
T ss_dssp             ---TTEEEEEECSCSSSSCEEEEEEETTEEE
T ss_pred             ---CCeEEeecCCCCceecEEEEEEEeeEEE
Confidence               2246799999999999999999977543

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.4e-11  Score=95.71  Aligned_cols=94  Identities=27%  Similarity=0.432  Sum_probs=75.5

Q ss_pred             CCCcee----ccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecc-----------------------------c
Q psy12426        214 VSPYIN----RDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-----------------------------K  260 (616)
Q Consensus       214 ~~P~~~----~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~-----------------------------~  260 (616)
                      .||.+.    ...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+..                             .
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            455542    2445678899999999999999999999999997655321                             1


Q ss_pred             CcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        261 DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       261 ~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      .++.+........|.|.++...|+|.|+|.|.|..|.....+.|.|.
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            23455555667789999999999999999999999999888888775

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.5e-11  Score=90.05  Aligned_cols=81  Identities=10%  Similarity=0.060  Sum_probs=61.5

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEe-eecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANII-GEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      |.+...++..+.+.+|+++.|+|.+. |.|.|.|+|++++..+..     ...                           
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~---------------------------   50 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQS---------------------------   50 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEE---------------------------
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eec---------------------------
Confidence            44443445568889999999999874 899999999998876531     000                           


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                       ......|.|.+++..|.|.|+|.|.|..|..+.+
T Consensus        51 -~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s   84 (90)
T d1gsma1          51 -DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT   84 (90)
T ss_dssp             -ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             -cCceeeEEcCccChhhCCcEEEEEEeCCCcEEEE
Confidence             1124679999999999999999999988865443

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3e-11  Score=92.58  Aligned_cols=99  Identities=12%  Similarity=0.091  Sum_probs=66.2

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      .|.|.....+.+.|..|+++.|.|.+.|+|.|.|+|+++|..+.....+.-.-...       ....  .       ...
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~-------~~~~--~-------~~~   64 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYS-------VENP--A-------NKR   64 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEE-------ECCS--S-------CGG
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeee-------eccc--e-------eee
Confidence            37776444456778899999999999999999999999999886422211110000       0000  0       000


Q ss_pred             cCCCCCceEecCcccCCeE-EEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQY-EFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~-~y~c~a~n~~g~~~~~  115 (616)
                      .......|.|.++++.|.| .|.|.|.|..|.....
T Consensus        65 ~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~  100 (107)
T d1iray3          65 RSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY  100 (107)
T ss_dssp             GEEEEEEEEESSCCGGGGSSCEEEEEECSSCEEEEE
T ss_pred             cccceEEEEEeecchHHCCcEEEEEEEeCCCeEEEE
Confidence            0001247999999999999 5999999999976544

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.16  E-value=9e-11  Score=87.68  Aligned_cols=84  Identities=20%  Similarity=0.217  Sum_probs=69.3

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcE--EEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce-
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF--KIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK-  299 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~--~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~-  299 (616)
                      +.++.+..|+++.|.|.+.|.|.+.+.|++++..+......  ..........|.|.+++..|.|.|+|.|.|..|... 
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            46788999999999999999999999999999998655433  333334556899999999999999999999999764 


Q ss_pred             eeEEEEE
Q psy12426        300 GTAKVTV  306 (616)
Q Consensus       300 ~~~~l~v  306 (616)
                      .+..|.|
T Consensus        90 ~s~~L~V   96 (97)
T d1biha3          90 HSLKLTV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4666665

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=9e-11  Score=89.25  Aligned_cols=83  Identities=25%  Similarity=0.328  Sum_probs=68.7

Q ss_pred             CCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEe--cC--CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEEE
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVN--DD--KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVTV  306 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--~~--~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v  306 (616)
                      +....+.|.+.|.|.|.+.|++++..+..+.+.....  ..  ....|.|.+++..|.|.|+|.|.|..|....++.+.+
T Consensus        17 ~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V   96 (105)
T d1wwca_          17 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   96 (105)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            3456688899999999999999999987766554432  22  2357999999999999999999999999999999999


Q ss_pred             ecCCCCC
Q psy12426        307 LDIPSPP  313 (616)
Q Consensus       307 ~~~p~~p  313 (616)
                      ..+|.|+
T Consensus        97 ~~~P~P~  103 (105)
T d1wwca_          97 LKEPFPV  103 (105)
T ss_dssp             SCCCCCS
T ss_pred             EeCCCCC
Confidence            8888765

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.5e-10  Score=89.75  Aligned_cols=97  Identities=19%  Similarity=0.191  Sum_probs=71.4

Q ss_pred             CCCCCCCCCEEEEecCCeEEEEecCCCCCC-----CCcceeEEEEEeeCCCC-c-eEeEeecCCccEEEcCCCCCCCeEE
Q psy12426        408 GRPDRPGQPTVTDWGKDHVDLEWTPPKKDG-----GSPISQYIIEKKPKYGP-W-EKACIVPANITATSVPDLKEGEEYE  480 (616)
Q Consensus       408 ~~p~~p~~~~~~~~~~~~v~l~W~~p~~~~-----~~~i~~Y~i~~~~~~~~-~-~~~~~~~~~~~~~~l~~L~p~t~Y~  480 (616)
                      ..|++|.+|++. .+.+++.|+|.+|...+     +..+..|.|+|+..+.. | ............+.+.+|.|++.|.
T Consensus         4 vkP~pP~nl~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~   82 (114)
T d2gysa2           4 VQPPEPRDLQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYV   82 (114)
T ss_dssp             BCCCCCEEEEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEE
T ss_pred             ccCCcCCCeEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEEE
Confidence            368899999985 56789999999876432     22356799999988762 2 2233444557789999999999999


Q ss_pred             EEEEEEcCCCC---CCCCCCCCCEEecc
Q psy12426        481 FRVIAVNKGGP---GEPSKASAPVTCKP  505 (616)
Q Consensus       481 ~~v~a~n~~G~---g~~s~~~~~~~~~~  505 (616)
                      |||+|.|..|.   |.+|..+..++..+
T Consensus        83 ~rVRa~~~~g~~~~g~wS~WS~~v~~~t  110 (114)
T d2gysa2          83 ARVRTRLAPGSRLSGRPSKWSPEVCWDS  110 (114)
T ss_dssp             EEEEEEECTTSSCCBCCCCCCCCEEEEC
T ss_pred             EEEEEEeCCCCCCCCCccCCcCCEeeeC
Confidence            99999999886   45677666665543

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.5e-11  Score=97.36  Aligned_cols=89  Identities=15%  Similarity=0.061  Sum_probs=69.2

Q ss_pred             CCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-C--------------ce---------EeEeecCCcc
Q psy12426        411 DRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-P--------------WE---------KACIVPANIT  466 (616)
Q Consensus       411 ~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~--------------~~---------~~~~~~~~~~  466 (616)
                      +.|.++.+...+.++|.|+|++|..++++.|.+|.|+|+.... .              |.         ..........
T Consensus         3 s~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T d2dtge3           3 NELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP   82 (125)
T ss_dssp             CCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred             CCCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence            4677999999999999999998876666679999999977542 1              11         1122334578


Q ss_pred             EEEcCCCCCCCeEEEEEEEEcCCCC-----CCCCCCCC
Q psy12426        467 ATSVPDLKEGEEYEFRVIAVNKGGP-----GEPSKASA  499 (616)
Q Consensus       467 ~~~l~~L~p~t~Y~~~v~a~n~~G~-----g~~s~~~~  499 (616)
                      +++|.+|.|++.|.|+|+|.|..|.     |+.|....
T Consensus        83 ~~~l~~L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~  120 (125)
T d2dtge3          83 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIY  120 (125)
T ss_dssp             EEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBC
T ss_pred             EEEECCCccCCEEEEEEEEEeCCCccCCCCCCCcccEE
Confidence            9999999999999999999999996     55555443

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.15  E-value=4.6e-11  Score=87.10  Aligned_cols=67  Identities=9%  Similarity=0.124  Sum_probs=54.8

Q ss_pred             CceEecCCCeEEEEEEEee-ecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426         10 GDIKLSAGTTLKFDANIIG-EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      ....|.+|+.|+|+|.+.+ .|.+.+.|||||+.+...+                                    ....|
T Consensus         8 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~------------------------------------~~~~l   51 (88)
T d2fcba2           8 PHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR------------------------------------SDPNF   51 (88)
T ss_dssp             SCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES------------------------------------SCCEE
T ss_pred             CCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc------------------------------------ccccc
Confidence            3456899999999999865 5667899999998876221                                    14578


Q ss_pred             EecCcccCCeEEEEEEEEcCCCCC
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      .|.++...|+|.|.|.|.|..|..
T Consensus        52 ~i~~v~~~dsG~Y~C~a~n~~g~~   75 (88)
T d2fcba2          52 SIPQANHSHSGDYHCTGNIGYTLY   75 (88)
T ss_dssp             EETTCCGGGCEEEEEEEEETTEEE
T ss_pred             ccCccCHHHCCeEEEEEEeCCCCE
Confidence            999999999999999999988753

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=4.6e-11  Score=88.23  Aligned_cols=85  Identities=15%  Similarity=0.205  Sum_probs=67.6

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      ..|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+....+..+..... ..|.|.+++..|+|.|+|.|.|..|....
T Consensus         6 ~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~   84 (92)
T d1epfa2           6 NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEIN   84 (92)
T ss_dssp             ECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGGTEEE
T ss_pred             EcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEEECcCCEEE
Confidence            44677899999999999999999999999999999887654433333222 36999999999999999999997776655


Q ss_pred             eEEEEE
Q psy12426        301 TAKVTV  306 (616)
Q Consensus       301 ~~~l~v  306 (616)
                      ...+.|
T Consensus        85 ~~~i~V   90 (92)
T d1epfa2          85 FKDIQV   90 (92)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555544

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.15  E-value=4.1e-11  Score=87.53  Aligned_cols=68  Identities=3%  Similarity=-0.051  Sum_probs=55.2

Q ss_pred             CCceEecCCCeEEEEEEEe-eecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426          9 LGDIKLSAGTTLKFDANII-GEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      +....|.+|+.|+|+|.+. |.|.+.+.|||||+.+...+.                                    ...
T Consensus         9 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~------------------------------------~~~   52 (89)
T d1fnla2           9 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH------------------------------------NSD   52 (89)
T ss_dssp             CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEE------------------------------------CCC
T ss_pred             CCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceecc------------------------------------ccc
Confidence            4455689999999999986 567778999999988763211                                    357


Q ss_pred             eEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      |.|.++...|+|.|.|.|.|..|..
T Consensus        53 l~I~~v~~~dsG~Y~C~a~n~~~~~   77 (89)
T d1fnla2          53 FHIPKATLKDSGSYFCRGLVGSKNV   77 (89)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             cEECccceeccceEEEEEEeCCCCe
Confidence            8899999999999999999987743

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.3e-10  Score=88.31  Aligned_cols=92  Identities=23%  Similarity=0.337  Sum_probs=66.7

Q ss_pred             CCCCCCCEEEEec------CCeEEEEecCCCC---CCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeE
Q psy12426        410 PDRPGQPTVTDWG------KDHVDLEWTPPKK---DGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEY  479 (616)
Q Consensus       410 p~~p~~~~~~~~~------~~~v~l~W~~p~~---~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y  479 (616)
                      |++|.++.+....      ..+|.|+|++|..   +.+..+..|+|+|+..++ .|.....  .....++|.+|.+++.|
T Consensus         1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~--~~~~~~~i~~L~~~t~Y   78 (106)
T d1axib2           1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDP--ILTTSVPVYSLKVDKEY   78 (106)
T ss_dssp             CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCC--BSSSEEEEEEEETTSCE
T ss_pred             CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeee--cccceEEECCCCCCCEE
Confidence            6788888775432      3479999998864   334457889999998876 7776543  34679999999999999


Q ss_pred             EEEEEEEcCCCCCCCCCCCCCEEec
Q psy12426        480 EFRVIAVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       480 ~~~v~a~n~~G~g~~s~~~~~~~~~  504 (616)
                      .|||+|.+..| |.+|..+..+..+
T Consensus        79 ~frVRa~~~~~-g~ws~wS~~v~v~  102 (106)
T d1axib2          79 EVRVRSKQRNS-GNYGEFSEVLYVT  102 (106)
T ss_dssp             EEEEEEEETTS-SCCCCCCCCEEEC
T ss_pred             EEEEEEEECCC-CCCCCCCCCEEEE
Confidence            99999998644 3444444444443

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.1e-10  Score=88.04  Aligned_cols=82  Identities=20%  Similarity=0.355  Sum_probs=69.1

Q ss_pred             cCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEec-----CCceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEE
Q psy12426        230 AGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVND-----DKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKV  304 (616)
Q Consensus       230 ~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l  304 (616)
                      .+....+.|.+.|.|.|.+.|++++..+..+.+..+...     .....|.|.+++..|.|.|+|.|.|..|.....+.+
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence            566778999999999999999999999987665544321     123579999999999999999999999999999999


Q ss_pred             EEecCCC
Q psy12426        305 TVLDIPS  311 (616)
Q Consensus       305 ~v~~~p~  311 (616)
                      .+...|.
T Consensus        95 ~V~~~P~  101 (103)
T d1wwbx_          95 HFMGWPG  101 (103)
T ss_dssp             CCSCCCC
T ss_pred             EEEeCCC
Confidence            8888775

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.3e-11  Score=90.36  Aligned_cols=88  Identities=20%  Similarity=0.215  Sum_probs=59.2

Q ss_pred             CCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCCCceE-eEeecCCccEEEcCCCCCCCeEEEEEEEEcCCCC
Q psy12426        413 PGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYGPWEK-ACIVPANITATSVPDLKEGEEYEFRVIAVNKGGP  491 (616)
Q Consensus       413 p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~~~~~-~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~G~  491 (616)
                      |.++.+.. ..+++.|.|.+|...++..+..|+|+|+..++.|.. ..........++|.+|.|++.|.|||+|.+..|.
T Consensus         8 Pp~l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa~~~~g~   86 (100)
T d2gysa4           8 PPSLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTG   86 (100)
T ss_dssp             CCEEEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEEEECCTT
T ss_pred             CCccEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEEEECCCC
Confidence            33677664 557899999988766565677899999987663322 2223345779999999999999999999988774


Q ss_pred             --CCCCCCCCCE
Q psy12426        492 --GEPSKASAPV  501 (616)
Q Consensus       492 --g~~s~~~~~~  501 (616)
                        |.+|+.+..+
T Consensus        87 ~~g~WSeWS~~~   98 (100)
T d2gysa4          87 YNGIWSEWSEAR   98 (100)
T ss_dssp             CCBCCCCCCCCE
T ss_pred             CCCCccCCCCCc
Confidence              7788777654

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.9e-10  Score=87.97  Aligned_cols=89  Identities=27%  Similarity=0.438  Sum_probs=72.1

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCEEEccccccceEEeccccCCCeEEEEEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMGDVSGTYTRAENLIEGHDYNFRVKAV  386 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~  386 (616)
                      +.|.+|.+++.+..+..+++.|+|.+|..+++..+..|.++++.... ..|..........+.+.+|.+++.|.|+|+|.
T Consensus         9 ~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A~   88 (107)
T d2crma1           9 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCI   88 (107)
T ss_dssp             CCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECSCCTTSCEEEEEEEE
T ss_pred             CCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeecCCccEEEEeccCCCCEEEEEEEEE
Confidence            45677776555556788999999998888878889999999986554 44555555667889999999999999999999


Q ss_pred             ecCcCCCCcc
Q psy12426        387 NKIGESLPLV  396 (616)
Q Consensus       387 n~~g~~~~~~  396 (616)
                      |..|.|.+++
T Consensus        89 n~~G~s~~S~   98 (107)
T d2crma1          89 SDGGQSAVSE   98 (107)
T ss_dssp             ETTEECCCCC
T ss_pred             CCCcCcCCCC
Confidence            9999988753

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=2.7e-10  Score=86.88  Aligned_cols=94  Identities=28%  Similarity=0.479  Sum_probs=73.8

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCEEEccc---cccceEEeccccCCCeEEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMGD---VSGTYTRAENLIEGHDYNFRV  383 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~~---~~~~~~~i~~L~~~~~y~~~v  383 (616)
                      .+|.+|.+ +.+..+..+++.|+|.++ .+++.+|.+|.|+++.... ..|.....   .....+.+.+|.+++.|.|+|
T Consensus         9 ~pP~~P~~-~~v~~~~~~sv~l~W~p~-~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV   86 (108)
T d1x4za1           9 SPPEAPDR-PTISTASETSVYVTWIPR-GNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRV   86 (108)
T ss_dssp             CCCCCCCC-CEEEECCSSEEEEECCCC-CCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEESCCTTCEEEEEE
T ss_pred             CCCccCCC-CEEEEccCCEEEEEEECC-CCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECCCCCCCEEEEEE
Confidence            46777776 567788899999999854 5567789999999987544 34544332   456789999999999999999


Q ss_pred             EEEecCcCCCCccccCCEEc
Q psy12426        384 KAVNKIGESLPLVCQSPITA  403 (616)
Q Consensus       384 ~a~n~~g~~~~~~~s~~~~~  403 (616)
                      .|.|..|.|.++..+..+.+
T Consensus        87 ~A~N~~G~s~~S~pS~p~~~  106 (108)
T d1x4za1          87 RALNMLGESEPSAPSRPYVV  106 (108)
T ss_dssp             EEEETTEECCCCCCCCCEEC
T ss_pred             EEECCCcCCCCCCCCCCEEe
Confidence            99999999988776666554

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.8e-11  Score=91.39  Aligned_cols=76  Identities=20%  Similarity=0.201  Sum_probs=56.8

Q ss_pred             CCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceEecCccc
Q psy12426         16 AGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGKVLDLIE   95 (616)
Q Consensus        16 ~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~i~~l~~   95 (616)
                      .+....|.|.+.|+|.|.|+|+|||+.|...+.+.-......                        ......|.|.++..
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~------------------------~~~~~~L~i~~~~~   71 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG------------------------EISEGCLLFNKPTH   71 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECS------------------------SEEEEEEEEESCCG
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeec------------------------ccceEEEEEeeccc
Confidence            344556778999999999999999999986555432211100                        11234689999999


Q ss_pred             CCeEEEEEEEEcCCCCCCCC
Q psy12426         96 GNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        96 ~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.|+|.|.|..|....+
T Consensus        72 ~D~G~Y~C~a~N~~G~~~~~   91 (105)
T d1wwca_          72 YNNGNYTLIAKNPLGTANQT   91 (105)
T ss_dssp             GGCEEEEEEEEETTEEEEEE
T ss_pred             ccceEEEEEEEcCCCEEEEE
Confidence            99999999999999977655

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.5e-12  Score=89.67  Aligned_cols=74  Identities=16%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      .+.++.+.+|+.+.|.|.+.|.|.|.+.|++++..+....             .+.+++..|+|.|.|.|.|..|.....
T Consensus        10 ~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~   76 (84)
T d2oz4a3          10 CPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRARSTQGEVTRE   76 (84)
T ss_dssp             SCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEEEcCCCEEEEE
Confidence            4567889999999999999999999999999987765322             244577889999999999999988888


Q ss_pred             EEEEEec
Q psy12426        302 AKVTVLD  308 (616)
Q Consensus       302 ~~l~v~~  308 (616)
                      +.|.|..
T Consensus        77 ~~l~V~~   83 (84)
T d2oz4a3          77 VTVNVLS   83 (84)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            8887764

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.1e-10  Score=85.36  Aligned_cols=82  Identities=13%  Similarity=0.129  Sum_probs=65.5

Q ss_pred             ccCCcceEEEcCCeEEEEEEEe-eecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        220 RDQLSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       220 ~~~~~~~~v~~g~~~~l~c~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      ......+.+..|+++.|.|.+. +.|.+.+.|.+.+..+..     .........|.|.+++..|+|.|+|.|.|..|..
T Consensus         7 ~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~   81 (90)
T d1gsma1           7 EPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTF   81 (90)
T ss_dssp             ESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEEeCCCcE
Confidence            3334567889999999999885 788999999987765421     2223445689999999999999999999998888


Q ss_pred             eeeEEEEE
Q psy12426        299 KGTAKVTV  306 (616)
Q Consensus       299 ~~~~~l~v  306 (616)
                      ..++.|.|
T Consensus        82 ~~s~~l~V   89 (90)
T d1gsma1          82 QHTVQLLV   89 (90)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            88777765

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=2.1e-10  Score=85.54  Aligned_cols=84  Identities=17%  Similarity=0.281  Sum_probs=70.6

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTA  302 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~  302 (616)
                      .+..+.+|+++.|.|.+.+ +.+.+.|++++..+....+..+...  ...|.|.++..+|.|.|+|.|.|..|.. +..+
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~--~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~   87 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQN--NSILRIDPIKREDAGEYQCEISNPVSVRRSNSI   87 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETT--TTEEEECSCCGGGCEEEEEEEESSSCCEECCCC
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCC--ceEEEEeccchhhceEEEEEEEeCCCCeEEEeE
Confidence            5567899999999999866 5679999999999988887776544  3489999999999999999999998876 4567


Q ss_pred             EEEEecCC
Q psy12426        303 KVTVLDIP  310 (616)
Q Consensus       303 ~l~v~~~p  310 (616)
                      .|.|..+|
T Consensus        88 ~L~V~~~P   95 (96)
T d1l6za2          88 KLDIIFDP   95 (96)
T ss_dssp             EEEECCSC
T ss_pred             EEEEEcCC
Confidence            88887765

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.9e-11  Score=89.69  Aligned_cols=92  Identities=35%  Similarity=0.546  Sum_probs=74.7

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc--cccceEEeccccCCCeEEEEEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTYTRAENLIEGHDYNFRVKAV  386 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~  386 (616)
                      +|.+|.+ +.+..++.+++.|+|.+|..+++..+..|.++++......|.....  .....+.+.+|.+++.|.|+|+|.
T Consensus         2 Pp~pP~~-p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~   80 (104)
T d1bpva_           2 PIDPPGK-PVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAK   80 (104)
T ss_dssp             CCCCCCC-CEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECSCCSSCCEEEEEEEE
T ss_pred             CCCCCCC-CEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcCCCCCCEEEEEEEEE
Confidence            5778877 5677888999999999988888889999999999877777766543  456789999999999999999999


Q ss_pred             ecCcC-CCCccccCCE
Q psy12426        387 NKIGE-SLPLVCQSPI  401 (616)
Q Consensus       387 n~~g~-~~~~~~s~~~  401 (616)
                      |..|. +.++..+..+
T Consensus        81 n~~G~~s~~S~~s~~v   96 (104)
T d1bpva_          81 NAAGAISPPSEPSDAI   96 (104)
T ss_dssp             CTTSCEEEEEEEEEEE
T ss_pred             ECCCCCCCCcCCCCCE
Confidence            99996 5554433333

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.1e-12  Score=97.94  Aligned_cols=95  Identities=21%  Similarity=0.251  Sum_probs=68.2

Q ss_pred             CCCCCCCCCCEEEE-ecCCeEEEEecCCCCC-----CCCcceeEEEEEeeCCCCceEeEeecCCccEEEcCCCCCCCeEE
Q psy12426        407 FGRPDRPGQPTVTD-WGKDHVDLEWTPPKKD-----GGSPISQYIIEKKPKYGPWEKACIVPANITATSVPDLKEGEEYE  480 (616)
Q Consensus       407 ~~~p~~p~~~~~~~-~~~~~v~l~W~~p~~~-----~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~  480 (616)
                      ..+|.+|.++.+.. .+.+++.|+|.+|..+     .+..+.+|.+++.  +..+........+...++|.+|.+++.|.
T Consensus         8 ~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~--~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~   85 (117)
T d2cspa1           8 AGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK--GQRVAEVIFPTADSTAVELVRLRSLEAKG   85 (117)
T ss_dssp             CCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESS--SSEEEEECCTTCSEEEEESHHHHHHTCSC
T ss_pred             CCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEee--cccceeeeeeccceeeeeccCCCCCcEEE
Confidence            45677888888754 5677999999987542     2334556665432  11223333445667789999999999999


Q ss_pred             EEEEEEcCCCCCCCCCCCCCEEe
Q psy12426        481 FRVIAVNKGGPGEPSKASAPVTC  503 (616)
Q Consensus       481 ~~v~a~n~~G~g~~s~~~~~~~~  503 (616)
                      |+|+|+|..|.|+.|......+.
T Consensus        86 v~V~A~n~~G~s~~S~~v~i~t~  108 (117)
T d2cspa1          86 VTVRTLSAQGESVDSAVAAVPPE  108 (117)
T ss_dssp             BEEEEEESSCCCCCCSCBCCCHH
T ss_pred             EEEEEEcCCCcCCCCCCEEeeCC
Confidence            99999999999999887665443

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=9.6e-11  Score=84.57  Aligned_cols=81  Identities=20%  Similarity=0.303  Sum_probs=61.0

Q ss_pred             CceeccCCcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       216 P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      |.|. ..+.+..+..|+.+.|.|.+.|.|.| .++|++++..+.....       .  .+.|......|.|.|+|.|.|.
T Consensus         2 P~f~-~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~-------~--~~~l~~~~~~d~G~Y~C~A~N~   71 (85)
T d1rhfa2           2 PFFT-VEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------S--PSVLNVTGVTQSTMFSCEAHNL   71 (85)
T ss_dssp             CEEE-ECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------S--SEEEEECCCSSCEEEEEEEEET
T ss_pred             CcEE-EeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC-------c--ceEEecCCccccEEEEEEEEcC
Confidence            5553 34678889999999999999999987 8999999988754321       1  3344455556999999999999


Q ss_pred             CCCc-eeeEEEEE
Q psy12426        295 WGTD-KGTAKVTV  306 (616)
Q Consensus       295 ~g~~-~~~~~l~v  306 (616)
                      .|.. +..+.+.+
T Consensus        72 ~G~~~S~~~~v~V   84 (85)
T d1rhfa2          72 KGLASSRTATVHL   84 (85)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             CCcEEEEEEEEEE
Confidence            9954 44555554

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=7.8e-11  Score=89.26  Aligned_cols=93  Identities=10%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.|. .++.++.|.+|+++.|.|.+.|.|.|.|.|+|+++.+...-.+     ..      ...        .... ...
T Consensus         2 ~sV~-t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~-----~~------~~~--------~~~~-~~~   60 (102)
T d1f97a1           2 GSVY-TAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCY-----NS------QIT--------APYA-DRV   60 (102)
T ss_dssp             CEEE-CSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEE-----TT------EEC--------GGGT-TTE
T ss_pred             CCEE-ccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeecc-----cc------ccc--------ccee-eEE
Confidence            4555 3477899999999999999999999999999977654420000     00      000        0000 000


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .....+|.|.++...|.|.|+|.|.|..|.....
T Consensus        61 ~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~   94 (102)
T d1f97a1          61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGE   94 (102)
T ss_dssp             EEETTEEEESCCCGGGCEEEEEEEEETTSSSEEE
T ss_pred             EecCCEEEEeECCccCCEEEEEEEEECCCCEEEE
Confidence            1123579999999999999999999999876543

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.2e-10  Score=89.96  Aligned_cols=93  Identities=15%  Similarity=0.227  Sum_probs=72.4

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeec---CceeEEEECCeeec---ccCcEEEEec------CCceEEEecCCCCCCcEEEE
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEP---IPTKEWLCNDITII---SKDRFKIVND------DKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p---~~~~~W~~~~~~~~---~~~~~~~~~~------~~~~~l~i~~l~~~~~g~y~  288 (616)
                      ..+.++.+..|+++.|.|.+.|.|   .|.+.|++++....   ...++.+...      .....|.|.+++..|.|.|+
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            445788999999999999999998   57999999875432   2233332221      12357999999999999999


Q ss_pred             EEEEcCCCCceeeEEEEEecCCCCC
Q psy12426        289 LAVKNSWGTDKGTAKVTVLDIPSPP  313 (616)
Q Consensus       289 c~a~n~~g~~~~~~~l~v~~~p~~p  313 (616)
                      |.|.|..|.....+.|.|..++..+
T Consensus        85 C~a~N~~G~~~~~~~L~V~~~~~~~  109 (113)
T d2dava1          85 CEVTYKDKFDSCSFDLEVHESTGTT  109 (113)
T ss_dssp             EEEECSSCEEEECCEEEEECCCCSC
T ss_pred             EEEEeCCCEEEEEEEEEEEcCCCcC
Confidence            9999999999999999998765543

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.6e-10  Score=83.65  Aligned_cols=89  Identities=15%  Similarity=0.233  Sum_probs=70.1

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc-CcEEEEecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK-DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      .+|.|.......+.+.+|+.+.|.|.+. .|.+.+.|++++..+..+ .++.+...+....|.|.++...|+|.|+|.|.
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            3455544444556899999999999985 588999999999998754 56777777778899999999999999999995


Q ss_pred             cCCCCceeeEEEEEe
Q psy12426        293 NSWGTDKGTAKVTVL  307 (616)
Q Consensus       293 n~~g~~~~~~~l~v~  307 (616)
                      |    ...++.|.|.
T Consensus        83 n----~~~s~~l~V~   93 (94)
T d1pd6a_          83 G----EKCSTELFVK   93 (94)
T ss_dssp             T----EEECCEEEEE
T ss_pred             e----EEEEEEEEEE
Confidence            5    3445555554

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.08  E-value=2.2e-10  Score=86.34  Aligned_cols=94  Identities=24%  Similarity=0.296  Sum_probs=71.9

Q ss_pred             EecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE-EEcc--ccccceEEeccccCCCeEEEE
Q psy12426        306 VLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPMG--DVSGTYTRAENLIEGHDYNFR  382 (616)
Q Consensus       306 v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~-~~~~--~~~~~~~~i~~L~~~~~y~~~  382 (616)
                      |++.|.+|.. +.+. ...+++.|+|.++.+ ++.++.+|.|+++......| ....  ......+.+.+|.+++.|.|+
T Consensus         2 V~dvP~~P~~-~~v~-~~~~sv~lsW~pp~~-~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~fr   78 (100)
T d1cfba1           2 VQDVPNAPKL-TGIT-CQADKAEIHWEQQGD-NRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFR   78 (100)
T ss_dssp             CCCCCCCCEE-EEEE-ECSSEEEEEEECCCC-TTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEECCSSEEEEEE
T ss_pred             cccCCCcCcC-cEEE-EcCCEEEEEEcCCcc-cccceEEEEEEEecCCCCceeeEEeeecCCceEEEEecCCCCCEEEEE
Confidence            4678888887 6654 566789999997655 56789999999987655443 2222  234567889999999999999


Q ss_pred             EEEEecCcCCCCccccCCEE
Q psy12426        383 VKAVNKIGESLPLVCQSPIT  402 (616)
Q Consensus       383 v~a~n~~g~~~~~~~s~~~~  402 (616)
                      |.|.|..|.|.++..+..++
T Consensus        79 V~A~n~~G~g~~S~~s~~vt   98 (100)
T d1cfba1          79 VIAFNKIGASPPSAHSDSCT   98 (100)
T ss_dssp             EEEEETTEECCCCCCCCCEE
T ss_pred             EEEEeCCcCCCCcCCCcCEE
Confidence            99999999999877666554

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5.9e-11  Score=87.21  Aligned_cols=73  Identities=12%  Similarity=0.104  Sum_probs=58.8

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      .++..+.+|+++.|.|.+.| |.|.+.|+++|+.+...+...                              .......|
T Consensus         4 ~~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~------------------------------~~~~~~~L   52 (92)
T d1olza1           4 YRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKY------------------------------GLMGRKNL   52 (92)
T ss_dssp             EEEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSB------------------------------CCTTTTCE
T ss_pred             hhheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeee------------------------------ecceeeEE
Confidence            45688999999999999998 678999999999886422110                              02234679


Q ss_pred             EecCcccCCeEEEEEEEEcCCCCC
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      .|.++.+.|.|.|.|.|.|..|..
T Consensus        53 ~I~~v~~~DsG~Y~C~A~n~~g~~   76 (92)
T d1olza1          53 LIFNLSEGDSGVYQCLSEERVKNK   76 (92)
T ss_dssp             EECSCCGGGCEEEEEEEEEECSSS
T ss_pred             EECCCCHHHCcEEEEEEEEcCCCE
Confidence            999999999999999999988754

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.6e-10  Score=88.75  Aligned_cols=90  Identities=19%  Similarity=0.240  Sum_probs=70.7

Q ss_pred             ccCCcceEEEcCCeEEEEEEEeeec---CceeEEEECCeeecc---cCcEEEEec------CCceEEEecCCCCCCcEEE
Q psy12426        220 RDQLSDIKVRAGSNFEFDINVIGEP---IPTKEWLCNDITIIS---KDRFKIVND------DKSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       220 ~~~~~~~~v~~g~~~~l~c~~~~~p---~~~~~W~~~~~~~~~---~~~~~~~~~------~~~~~l~i~~l~~~~~g~y  287 (616)
                      ...+.++.+..|+++.|.|.+.|.|   .|.+.|++++.....   ..++.....      .....|.|.+++..|.|.|
T Consensus         8 v~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   87 (110)
T d2avga1           8 VMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGY   87 (110)
T ss_dssp             EECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEE
T ss_pred             EECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEE
Confidence            4446789999999999999999998   578999998754321   223332211      1235799999999999999


Q ss_pred             EEEEEcCCCCceeeEEEEEecC
Q psy12426        288 TLAVKNSWGTDKGTAKVTVLDI  309 (616)
Q Consensus       288 ~c~a~n~~g~~~~~~~l~v~~~  309 (616)
                      +|.|.|..|....++.|.|.+.
T Consensus        88 ~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          88 RCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEETTEEEEEEEEEEEESC
T ss_pred             EEEEEECCCeEEEEEEEEEEec
Confidence            9999999999999999998753

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.7e-10  Score=86.99  Aligned_cols=88  Identities=18%  Similarity=0.187  Sum_probs=64.2

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      ||.|..  +..  -..++.+.|.|.+.|+|.|.|+|+|||+.|..++.+.-.....                       .
T Consensus         4 pP~it~--~~~--~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~-----------------------~   56 (103)
T d1wwbx_           4 APTITF--LES--PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVT-----------------------N   56 (103)
T ss_dssp             CCCCCC--CCC--CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEE-----------------------C
T ss_pred             CCeeEE--cCC--CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeeccc-----------------------c
Confidence            788752  222  2468888999999999999999999999998544443321100                       0


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .......|.|.+++..|.|.|.|.|.|..|.....
T Consensus        57 ~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~   91 (103)
T d1wwbx_          57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ   91 (103)
T ss_dssp             SSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             cccceEEEEECCCCHHhCceEEEEEeccCCEEEEE
Confidence            01113469999999999999999999999977554

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.9e-10  Score=89.38  Aligned_cols=97  Identities=26%  Similarity=0.466  Sum_probs=76.4

Q ss_pred             EEEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCEEEccc-cccceEEeccccCCCeEEE
Q psy12426        304 VTVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMGD-VSGTYTRAENLIEGHDYNF  381 (616)
Q Consensus       304 l~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~~-~~~~~~~i~~L~~~~~y~~  381 (616)
                      +.+.+.|.+|.+ +.+..+..+++.|+|.++. +++.++..|.|+++.... ..|..... .....+++.+|.+++.|.|
T Consensus        10 ~~~~~~P~pP~~-~~v~~~~~~sv~l~W~p~~-~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~f   87 (117)
T d1uema_          10 YDLSDLPGPPSK-PQVTDVTKNSVTLSWQPGT-PGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLF   87 (117)
T ss_dssp             CCSCCSCBCCCC-CEEEEECSSCEEEECCCCB-CSSSCCCEEEEEEEETTTEEEEEEEEEEECSSEEEECSCCTTCEEEE
T ss_pred             ceeCccCcCCCC-CEEEEccCCEEEEEEECCC-cCCCCeEEEEEEEeccCCceeeEEeccccccccceECCCCCCCEEEE
Confidence            355678888887 6788889999999999654 456789999999876544 34655543 4567899999999999999


Q ss_pred             EEEEEecCcCCCCccccCCEE
Q psy12426        382 RVKAVNKIGESLPLVCQSPIT  402 (616)
Q Consensus       382 ~v~a~n~~g~~~~~~~s~~~~  402 (616)
                      +|+|.|..|.+.++..+..+.
T Consensus        88 rV~A~N~~G~s~~S~~s~~v~  108 (117)
T d1uema_          88 MVRAINPQGLSDPSPMSDPVR  108 (117)
T ss_dssp             EEEEEETTEEEEECCCCCCEE
T ss_pred             EEEEEeCCcCCCCcCCCcCEE
Confidence            999999999998876555544

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.7e-10  Score=86.66  Aligned_cols=94  Identities=22%  Similarity=0.345  Sum_probs=72.1

Q ss_pred             CCCCCCCCCEEEEe--cCCeEEEEecCCCC--CCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEE
Q psy12426        408 GRPDRPGQPTVTDW--GKDHVDLEWTPPKK--DGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFR  482 (616)
Q Consensus       408 ~~p~~p~~~~~~~~--~~~~v~l~W~~p~~--~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~  482 (616)
                      ..|++|.++.+..+  +.+++.|+|.+|..  .....+..|.++++..+. .|....  ......++|.+|.+++.|.||
T Consensus         6 VkP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~~~t~Y~~r   83 (109)
T d1uc6a_           6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVE--LSNGTAHTITDAYAGKEYIIQ   83 (109)
T ss_dssp             CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEE--ESSCSEEEETTCCSSSCEEEE
T ss_pred             EECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEec--cCCceeEEeCCCCCCCEEEEE
Confidence            46889999988765  56789999998753  334456789999988776 666543  345678999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCEEec
Q psy12426        483 VIAVNKGGPGEPSKASAPVTCK  504 (616)
Q Consensus       483 v~a~n~~G~g~~s~~~~~~~~~  504 (616)
                      |+|.|. |.|.+|..+..+...
T Consensus        84 VrA~~~-~~g~wS~WS~~~~~t  104 (109)
T d1uc6a_          84 VAAKDN-EIGTWSDWSVAAHAT  104 (109)
T ss_dssp             EECCBS-SSCCCCCCCEEEEEC
T ss_pred             EEEEEC-CCCCcCCCCCCEEeE
Confidence            999885 667777776665543

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5e-10  Score=84.37  Aligned_cols=86  Identities=21%  Similarity=0.278  Sum_probs=68.4

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc-----cccceEEeccccCCCeEEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD-----VSGTYTRAENLIEGHDYNFRV  383 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~-----~~~~~~~i~~L~~~~~y~~~v  383 (616)
                      .|.+|.  +.......+++.|.|.+|..+++.+|.+|.|+++..+...|.....     .....+.+.+|.+++.|.|+|
T Consensus         2 vP~~P~--~~~~~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV   79 (101)
T d2haza1           2 TPSSPS--IDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRL   79 (101)
T ss_dssp             CCCCCE--EEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTCEEEEEE
T ss_pred             cCcCCc--cCEEEeeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecCCCCCeEEEEEE
Confidence            466664  3334567788999999988888889999999999877766654432     335679999999999999999


Q ss_pred             EEEecCcCCCCcc
Q psy12426        384 KAVNKIGESLPLV  396 (616)
Q Consensus       384 ~a~n~~g~~~~~~  396 (616)
                      .|.|..|.|.++.
T Consensus        80 ~A~N~~G~g~~S~   92 (101)
T d2haza1          80 AALNGKGLGEISA   92 (101)
T ss_dssp             EEEETTEECCCCC
T ss_pred             EEEeCCcCcCCCC
Confidence            9999999988854

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.06  E-value=1.2e-10  Score=87.11  Aligned_cols=89  Identities=17%  Similarity=0.189  Sum_probs=66.0

Q ss_pred             CCceeccCCcceEEEcC---CeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEE
Q psy12426        215 SPYINRDQLSDIKVRAG---SNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g---~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      +|.|. ..+.+..+..|   +++.|.|.+.|.|.|.+.|++++..+.......+...+ ...|.|..+...|.|.|+|.|
T Consensus         4 ~P~f~-~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           4 GPVFE-EQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA-GDLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEE-ECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEET-TEEEEESCCHHHHCEEEEEEE
T ss_pred             CCEEE-EeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeee-eeEEEEecccccCCEEEEEEE
Confidence            35553 34566666665   68999999999999999999999988655433332222 247888889999999999999


Q ss_pred             EcCCCCc-eeeEEEE
Q psy12426        292 KNSWGTD-KGTAKVT  305 (616)
Q Consensus       292 ~n~~g~~-~~~~~l~  305 (616)
                      .|..|.. +..+.|.
T Consensus        82 ~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          82 TNARGTVVSREASLR   96 (97)
T ss_dssp             EETTEEEECCCEEEE
T ss_pred             EECCCEEEEEEEEEe
Confidence            9999975 3345543

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.06  E-value=4.7e-11  Score=90.63  Aligned_cols=82  Identities=13%  Similarity=0.171  Sum_probs=63.1

Q ss_pred             ccCCcceEEEcCCeEEEEEEE-eeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        220 RDQLSDIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       220 ~~~~~~~~v~~g~~~~l~c~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      ......+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+...............+|.|.++++.|.|.|+|.|.|..|..
T Consensus         8 ~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   87 (105)
T d1cs6a2           8 AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFI   87 (105)
T ss_dssp             SSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             CCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCE
Confidence            444566889999999999997 6899999999999876543322222222333489999999999999999999988876


Q ss_pred             eee
Q psy12426        299 KGT  301 (616)
Q Consensus       299 ~~~  301 (616)
                      ..+
T Consensus        88 ~~~   90 (105)
T d1cs6a2          88 TKS   90 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.05  E-value=2.5e-10  Score=84.86  Aligned_cols=82  Identities=13%  Similarity=0.225  Sum_probs=65.8

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .|.| ...+.++.+.+|+.+.|.|.+.|.|.+ .+.|++++..+.......... ....+|.|.++...|.|.|+|.|.|
T Consensus         2 ~P~i-~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           2 YPVL-KDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR-KDEGSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CCEE-CCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC-TTSCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEE-EecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeec-ccceEEEEeccChhcCeEEEEEEEe
Confidence            3555 445678899999999999999999876 799999999886554333222 3345799999999999999999999


Q ss_pred             CCCCc
Q psy12426        294 SWGTD  298 (616)
Q Consensus       294 ~~g~~  298 (616)
                      ..|..
T Consensus        80 ~~G~~   84 (94)
T d1biha1          80 PAGVA   84 (94)
T ss_dssp             TTEEE
T ss_pred             CCCEE
Confidence            99864

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.5e-10  Score=84.02  Aligned_cols=85  Identities=24%  Similarity=0.310  Sum_probs=69.3

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc-cccccceEEeccccCCCeEEEEEEEEec
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      |.+|.+ +.+..++.+++.|+|.+|...++..+..|.++++..+...|... .......+.+.+|.+++.|.|+|.|.|.
T Consensus         1 P~~P~~-~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~~rV~A~n~   79 (96)
T d1x5xa1           1 PSMPAS-PVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNS   79 (96)
T ss_dssp             CCCCCC-CEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEESCCSSCEEEEEEEEECS
T ss_pred             CccCCC-CEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEeecCCCCEEEECCCCCCCEEEEEEEEEcC
Confidence            556776 67888899999999999888778889999999887655554333 2355678999999999999999999999


Q ss_pred             CcCCCCc
Q psy12426        389 IGESLPL  395 (616)
Q Consensus       389 ~g~~~~~  395 (616)
                      .|.|.++
T Consensus        80 ~G~s~~S   86 (96)
T d1x5xa1          80 EGKSNPS   86 (96)
T ss_dssp             SCEEEEC
T ss_pred             CcEeCCC
Confidence            9988774

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.7e-11  Score=89.64  Aligned_cols=88  Identities=16%  Similarity=0.193  Sum_probs=68.5

Q ss_pred             CceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcE-EEEEEEEcC
Q psy12426        216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSG-IYTLAVKNS  294 (616)
Q Consensus       216 P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g-~y~c~a~n~  294 (616)
                      |.|.. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  .........|.|.++...|.| .|+|.|.|.
T Consensus         3 P~i~~-~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           3 PTLKV-QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CEEEE-ECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CEEEE-eCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEcC
Confidence            55533 34567789999999999999999999999999876543221  122344568999999999999 799999999


Q ss_pred             CCCceeeEEEEE
Q psy12426        295 WGTDKGTAKVTV  306 (616)
Q Consensus       295 ~g~~~~~~~l~v  306 (616)
                      .|....++.|.|
T Consensus        80 ~G~~~~s~~l~V   91 (92)
T d2ifga1          80 VGRAEVSVQVNV   91 (92)
T ss_dssp             TEECCEEECCCC
T ss_pred             CCEEEEEEEEEE
Confidence            998877766544

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.3e-10  Score=87.28  Aligned_cols=89  Identities=10%  Similarity=0.041  Sum_probs=66.0

Q ss_pred             CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-Cc-eEeEeecCCccEEEcCCCCCCCeEEEEEEEEcCC
Q psy12426        412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PW-EKACIVPANITATSVPDLKEGEEYEFRVIAVNKG  489 (616)
Q Consensus       412 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~-~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n~~  489 (616)
                      +|.++++...+.+. .|+|++|..+++. +..|.+....... .| ............+++.+|.+++.|.|||+|+|..
T Consensus         3 ~P~nv~v~s~n~~~-~L~W~pP~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~n~~   80 (98)
T d1fyhb1           3 TPTNVTIESYNMNP-IVYWEYQIMPQVP-VFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVGQ   80 (98)
T ss_dssp             CCEEEEEECBSSCC-EEEEECCCCSSCC-EEEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEEETT
T ss_pred             cCCceEEEEeCCcE-EEEECCCCCCCCC-ceeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEEcCC
Confidence            68899998877655 5999988766553 4444444433332 33 3445556667788999999999999999999999


Q ss_pred             CCCCCCCCCCCEE
Q psy12426        490 GPGEPSKASAPVT  502 (616)
Q Consensus       490 G~g~~s~~~~~~~  502 (616)
                      |.|+++....++.
T Consensus        81 g~S~ws~s~~f~~   93 (98)
T d1fyhb1          81 KESAYAKSEEFAV   93 (98)
T ss_dssp             EECCCEECCCBCH
T ss_pred             cccCCccCCCcEE
Confidence            9999998776643

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=9.4e-10  Score=80.58  Aligned_cols=83  Identities=24%  Similarity=0.378  Sum_probs=68.2

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC--cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD--RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      ..+.++.+..|+++.|.|.+ +.|.+.+.|++++..+..+.  ++.+...+....|.|.++...|+|.|+|.|.|    .
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~   79 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----G   79 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----E
T ss_pred             cCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----c
Confidence            44578899999999999998 46888999999999876554  46677777888999999999999999999965    3


Q ss_pred             eeeEEEEEec
Q psy12426        299 KGTAKVTVLD  308 (616)
Q Consensus       299 ~~~~~l~v~~  308 (616)
                      ..++.++|..
T Consensus        80 ~~~a~l~V~~   89 (90)
T d1x44a1          80 QSSAKLSVDL   89 (90)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEEEE
Confidence            4566666653

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.03  E-value=9.2e-11  Score=84.94  Aligned_cols=68  Identities=10%  Similarity=0.129  Sum_probs=55.5

Q ss_pred             ccCCCCCCceEecCCCeEEEEEEEeeecCC-eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          3 HIDRRHLGDIKLSAGTTLKFDANIIGEPVP-HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         3 ~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p-~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      .|..+ |....|.+|+.|+|+|.+.|+|.+ .+.|+|||..+.                                     
T Consensus         6 ~i~~~-P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~-------------------------------------   47 (85)
T d2fcba1           6 VLKLE-PQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIP-------------------------------------   47 (85)
T ss_dssp             EEEEE-SCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECT-------------------------------------
T ss_pred             EEEEC-CCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccc-------------------------------------
Confidence            35544 778889999999999999999887 488999998765                                     


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~  109 (616)
                       .....|.|.++...|.|.|+|.|.|..
T Consensus        48 -~~~~~l~i~~v~~~dsG~Y~C~a~ns~   74 (85)
T d2fcba1          48 -THTQPSYRFKANNNDSGEYTCQTGQTS   74 (85)
T ss_dssp             -TCCSSEEEEECCGGGCEEEEEECTTSB
T ss_pred             -ccccceEEeeccccCCcEEEEECCCCc
Confidence             123578889999999999999987643

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.02  E-value=8.6e-11  Score=85.91  Aligned_cols=83  Identities=22%  Similarity=0.386  Sum_probs=71.6

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      .++.++.+.+|+++.|.|.+ +.|.+.+.|++++..+..+.++.+...+..+.|.|.+++..|+|.|+|.|.|.    ..
T Consensus         6 ~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~----~~   80 (89)
T d1tiua_           6 KPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA----KS   80 (89)
T ss_dssp             BCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC----BC
T ss_pred             cCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce----EE
Confidence            34578999999999999997 57889999999999999899999998888999999999999999999998664    34


Q ss_pred             eEEEEEec
Q psy12426        301 TAKVTVLD  308 (616)
Q Consensus       301 ~~~l~v~~  308 (616)
                      ++.|.|.+
T Consensus        81 sa~l~V~e   88 (89)
T d1tiua_          81 AANLKVKE   88 (89)
T ss_dssp             CEEEEEEC
T ss_pred             EEEEEEEE
Confidence            55666653

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.8e-10  Score=85.61  Aligned_cols=90  Identities=21%  Similarity=0.188  Sum_probs=67.9

Q ss_pred             CceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEE-----e-cC------CceEEEecCCCCCC
Q psy12426        216 PYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIV-----N-DD------KSTKLKVFDSKRGD  283 (616)
Q Consensus       216 P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~-----~-~~------~~~~l~i~~l~~~~  283 (616)
                      |.+.......+.+..|+++.|.|.+.+.|.+.+.|++++..+.........     . ..      ..+.|.|.+++..|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            444333344567788999999999999999999999999887544322111     0 11      13589999999999


Q ss_pred             cE-EEEEEEEcCCCCceeeEEEE
Q psy12426        284 SG-IYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       284 ~g-~y~c~a~n~~g~~~~~~~l~  305 (616)
                      .| .|+|.|.|..|.....+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999887777664

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.5e-10  Score=86.48  Aligned_cols=83  Identities=19%  Similarity=0.285  Sum_probs=59.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeee---CCeeeeeccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRA---GGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~---~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +|.+. + ++++.|.+|+++.|.|.+.|.|.|.+.|++   ++..+.....+.-.  +                      
T Consensus         2 ~P~f~-~-~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~--~----------------------   55 (96)
T d2c9aa1           2 TPHFL-R-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS--S----------------------   55 (96)
T ss_dssp             SCEEC-C-CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEE--T----------------------
T ss_pred             cCeec-c-cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEE--e----------------------
Confidence            57776 4 999999999999999999999998766543   22222211111100  0                      


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                          ......|.|.++.+.|+|.|+|.|.|..|...
T Consensus        56 ----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   87 (96)
T d2c9aa1          56 ----RRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI   87 (96)
T ss_dssp             ----TEEEEEEEECSCCGGGCSEEEEEEEETTEEEE
T ss_pred             ----ecCceEEEECCCCHHHCeEEEEEEEeCCCeEE
Confidence                11135799999999999999999999999653

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.2e-10  Score=83.89  Aligned_cols=90  Identities=17%  Similarity=0.257  Sum_probs=65.1

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEE---CCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEE
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLC---NDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~---~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      +|.|. . +.++.+..|+++.|.|.+.|.|.|.+.|.+   ++..+.......+........|.|.++...|.|.|+|.|
T Consensus         2 ~P~f~-~-~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (96)
T d2c9aa1           2 TPHFL-R-IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI   79 (96)
T ss_dssp             SCEEC-C-CCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCeec-c-cCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEE
Confidence            47774 3 678999999999999999999988655432   222222222233333334458999999999999999999


Q ss_pred             EcCCCCc-eeeEEEEE
Q psy12426        292 KNSWGTD-KGTAKVTV  306 (616)
Q Consensus       292 ~n~~g~~-~~~~~l~v  306 (616)
                      .|..|.. +..+.|.|
T Consensus        80 ~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          80 RTEGGVGISNYAELVV   95 (96)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEE
Confidence            9999976 44467766

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1e-10  Score=83.99  Aligned_cols=69  Identities=9%  Similarity=0.052  Sum_probs=53.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCe-eeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPH-VDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      .|.|..+ |....|.+|+.|+|+|.+.|+|.|. +.|+|++..+..                                  
T Consensus         1 KP~It~~-P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~----------------------------------   45 (82)
T d1f2qa1           1 KPKVSLN-PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE----------------------------------   45 (82)
T ss_dssp             CCCCEEE-SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC----------------------------------
T ss_pred             CCEEEEc-CCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec----------------------------------
Confidence            4888876 7778899999999999999999985 667888876651                                  


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                          ....|.|.++...|.|.|+|.|.|.
T Consensus        46 ----~~~~l~i~~v~~~d~G~Y~C~a~~s   70 (82)
T d1f2qa1          46 ----TNSSLNIVNAKFEDSGEYKCQHQQV   70 (82)
T ss_dssp             ----CSSEEEECSCCGGGCEEEEEECTTS
T ss_pred             ----ccceeEECCCChhhCCcEEEEecCC
Confidence                2457899999999999999998764

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.2e-10  Score=85.25  Aligned_cols=83  Identities=16%  Similarity=0.099  Sum_probs=62.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEee-ecCC--eeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIG-EPVP--HVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~P~p--~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      ||++... +.+..|.+|+.++|+|.+.| +|.|  .++|+|++..|......                            
T Consensus         4 P~~v~i~-p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~----------------------------   54 (103)
T d1iama1           4 PERVELA-PLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV----------------------------   54 (103)
T ss_dssp             CSEEEEC-CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC----------------------------
T ss_pred             CCceEEe-CCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc----------------------------
Confidence            5667656 66777999999999999875 6766  47899999988731110                            


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                         .......|.|......|.|.|+|.|.|..|.....
T Consensus        55 ---~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~   89 (103)
T d1iama1          55 ---GEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLE   89 (103)
T ss_dssp             ---TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSC
T ss_pred             ---cccceEEEEEeeehhHCCCEEEEEEEeCCCCccCe
Confidence               01113468888899999999999999999866544

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.6e-10  Score=85.32  Aligned_cols=79  Identities=20%  Similarity=0.342  Sum_probs=64.2

Q ss_pred             eEEEEEEEeeecCceeEEEECCeeecccCcEEEEecC-------CceEEEecCCCCCCcEEEEEEEEcCCCCceeeEEEE
Q psy12426        233 NFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDD-------KSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTAKVT  305 (616)
Q Consensus       233 ~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~  305 (616)
                      ...+.|.+.|.|.|.+.|++++..+..+.+.......       ....|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus        17 ~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~   96 (107)
T d1he7a_          17 HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA   96 (107)
T ss_dssp             EEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEE
Confidence            3446668999999999999999998766655443211       135799999999999999999999999999999998


Q ss_pred             EecCCC
Q psy12426        306 VLDIPS  311 (616)
Q Consensus       306 v~~~p~  311 (616)
                      +..+|.
T Consensus        97 v~~~P~  102 (107)
T d1he7a_          97 FMDNPF  102 (107)
T ss_dssp             CCSCTT
T ss_pred             EEcCCC
Confidence            888773

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.01  E-value=1.3e-10  Score=83.79  Aligned_cols=68  Identities=6%  Similarity=-0.019  Sum_probs=55.3

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCe-eeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPH-VDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~-v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      |.|..+ |....|.+|++|+|+|.+.|.|.|. +.|+|++..+..                                   
T Consensus         6 pvi~~~-P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~-----------------------------------   49 (84)
T d1fnla1           6 AVVFLE-PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-----------------------------------   49 (84)
T ss_dssp             CEEEEE-SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-----------------------------------
T ss_pred             CEEEEC-CCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee-----------------------------------
Confidence            455544 7788899999999999999999986 567888876651                                   


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                         ....|.|.++...|+|.|+|.|.|.
T Consensus        50 ---~~~~l~i~~~~~~d~G~Y~C~a~~s   74 (84)
T d1fnla1          50 ---QASSYFIDAATVNDSGEYRCQTNLS   74 (84)
T ss_dssp             ---SCSEEEESSCCGGGCEEEEEECSSS
T ss_pred             ---cceeeEecCCcccCCEEEEEEccCC
Confidence               1357899999999999999998754

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1e-09  Score=83.06  Aligned_cols=85  Identities=25%  Similarity=0.409  Sum_probs=69.2

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEe
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVN  387 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n  387 (616)
                      ..|.+|.+ +.+...+..++.|+|.+|... +..+.+|.|.++..+...|.... ....++.+.+|.+++.|.|+|+|.|
T Consensus         9 ~vP~~P~~-l~v~~~s~~si~l~W~~P~~~-~g~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n   85 (103)
T d1x5ga1           9 QLPGPAPN-LRAYAASPTSITVTWETPVSG-NGEIQNYKLYYMEKGTDKEQDVD-VSSHSYTINGLKKYTEYSFRVVAYN   85 (103)
T ss_dssp             SCCCCCSS-CEEEEEETTEEEEECCCCSCC-SSCCSEEEEEEEETTCCCCCCEE-ECSSEEEECSCCTTCEEEEEEEEEC
T ss_pred             CCcccCCC-cEEEEccCCEEEEEEECCcCC-CccEEEEEEEEEeCCCceeEEEe-ccccEEecCCCCCCCEEEEEEEEEc
Confidence            35677776 788889999999999987654 45899999999887666554332 3456899999999999999999999


Q ss_pred             cCcCCCCc
Q psy12426        388 KIGESLPL  395 (616)
Q Consensus       388 ~~g~~~~~  395 (616)
                      ..|.|.++
T Consensus        86 ~~G~g~~S   93 (103)
T d1x5ga1          86 KHGPGVST   93 (103)
T ss_dssp             SSCCCCBC
T ss_pred             CCcCcCCC
Confidence            99988774

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.7e-10  Score=83.08  Aligned_cols=68  Identities=9%  Similarity=-0.049  Sum_probs=54.3

Q ss_pred             CCceEecCCCeEEEEEEEeee-cCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426          9 LGDIKLSAGTTLKFDANIIGE-PVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      +....|.+|+.|+|+|.+.+. |.+.+.|||||..+...                                    .....
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~------------------------------------~~~~~   50 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW------------------------------------YENHN   50 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC------------------------------------CCSSE
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc------------------------------------cccce
Confidence            445568999999999998765 55689999999877521                                    12357


Q ss_pred             eEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      |.|.+++.+|+|.|+|.|.|..|..
T Consensus        51 l~i~~~~~~dsG~Y~C~a~n~~~~~   75 (89)
T d1f2qa2          51 ISITNATVEDSGTYYCTGKVWQLDY   75 (89)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EEEeeeeeecCcEEEEEEEeCCCCe
Confidence            8999999999999999999977643

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.1e-09  Score=79.47  Aligned_cols=89  Identities=18%  Similarity=0.259  Sum_probs=70.5

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      |.+|.+ +.+...+.+++.|+|.+|... +..+..|.|+++..+...|... ......+.+.+|.+++.|.|+|+|.|..
T Consensus         1 P~~P~~-~~v~~~s~~si~l~W~~p~~~-~~~i~~Y~v~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   77 (93)
T d1x4xa1           1 PDQCKP-PQVTCRSATCAQVNWEVPLSN-GTDVTEYRLEWGGVEGSMQICY-CGPGLSYEIKGLSPATTYYCRVQALSVV   77 (93)
T ss_dssp             CCCCCC-CCCEEEETTEEEEECCCCSCS-SSCCCEEEEEEESSTTSCCEEE-EESCSEEEEESCCSSCEEEEEEEEECSS
T ss_pred             CcCCCC-CEEEEeCCCeEEEEEEecccC-CCeeEEEEEEEccCCCcceEee-cCCccEEEEcccceeeEEEEEEEEEECC
Confidence            456666 577888999999999987664 5689999999987666555443 3456789999999999999999999999


Q ss_pred             cCCCCccccCCEEcc
Q psy12426        390 GESLPLVCQSPITAK  404 (616)
Q Consensus       390 g~~~~~~~s~~~~~~  404 (616)
                      |.|.++   ..+.+.
T Consensus        78 G~s~~S---~~~~~~   89 (93)
T d1x4xa1          78 GAGPFS---EVVACV   89 (93)
T ss_dssp             CCCCBC---CCEEEE
T ss_pred             cCcCCC---CcEEEE
Confidence            988874   444444

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.5e-09  Score=80.98  Aligned_cols=94  Identities=10%  Similarity=0.139  Sum_probs=75.3

Q ss_pred             CCCCCCCCccceeec--CCeEEEEEeCCCC-CCCCceEEEEEEEEeCCCCCEEEccc-cccceEEeccccCCCeEEEEEE
Q psy12426        309 IPSPPEGPLKPSNIT--KSSCNLEWRAPRD-DGGTDILHYVVEKMDMETGRWVPMGD-VSGTYTRAENLIEGHDYNFRVK  384 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~--~~~~~l~W~~~~~-~~~~~i~~y~v~~~~~~~~~~~~~~~-~~~~~~~i~~L~~~~~y~~~v~  384 (616)
                      +|.+|.+ +.+..+.  .+.+.|+|++|.. +.+..+..|.|+++..+...|..... .....+.+.+|.+++.|.|+|+
T Consensus         1 kP~pP~~-l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVr   79 (104)
T d1n26a3           1 QPDPPAN-ITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLR   79 (104)
T ss_dssp             CCCCCEE-EEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGGGCSEEEESSCCTTCCEEEEEE
T ss_pred             CCcCCCC-CEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeeccccceEEEEECCCCCCCEEEEEEE
Confidence            4677876 6666553  4579999998764 34667899999999888878876643 4567899999999999999999


Q ss_pred             EEecCcCCCCccccCCEEc
Q psy12426        385 AVNKIGESLPLVCQSPITA  403 (616)
Q Consensus       385 a~n~~g~~~~~~~s~~~~~  403 (616)
                      |.|..|.|.+++++..+..
T Consensus        80 a~n~~g~g~wSewS~~~~~   98 (104)
T d1n26a3          80 AQEEFGQGEWSEWSPEAMG   98 (104)
T ss_dssp             EEETTTBSCCCCCCCCEEE
T ss_pred             EEeCCCccCCcCCcCCEEe
Confidence            9999999999888776653

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-09  Score=83.12  Aligned_cols=93  Identities=27%  Similarity=0.369  Sum_probs=73.6

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEE--EccccccceEEeccccCCCeEEEEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV--PMGDVSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~--~~~~~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      ..|.+|.+ +.+..++...+.|+|.+|..+++..+..|.|.++..+...+.  .........+.+.+|.+++.|.|+|.|
T Consensus         9 ~~P~~P~~-l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~rV~A   87 (107)
T d1x5fa1           9 PLPSAPRD-VVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMA   87 (107)
T ss_dssp             CCCCCCEE-EEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECSCCTTCEEEEEEEE
T ss_pred             CCCcCCCc-cEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecCCCCCCEEEEEEEE
Confidence            45677776 778888999999999988766677899999999875554433  334456778999999999999999999


Q ss_pred             EecCcCCCCccccCCEEcc
Q psy12426        386 VNKIGESLPLVCQSPITAK  404 (616)
Q Consensus       386 ~n~~g~~~~~~~s~~~~~~  404 (616)
                      .|..|.|.+   +..+.+.
T Consensus        88 ~n~~G~g~~---S~~i~v~  103 (107)
T d1x5fa1          88 QNKHGSGES---SAPLRVE  103 (107)
T ss_dssp             ECSSCEEEE---CCCEEEE
T ss_pred             EeCCCCcCC---CCCEEEE
Confidence            999998876   4455554

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=2.7e-09  Score=79.47  Aligned_cols=84  Identities=26%  Similarity=0.456  Sum_probs=65.0

Q ss_pred             CcceEEEcCCeEEEEEEEeeecC-ceeEEEEC-Ceeecc-cCcEEEE-ecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPI-PTKEWLCN-DITIIS-KDRFKIV-NDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~-~~~~W~~~-~~~~~~-~~~~~~~-~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      |....+..|+.+.|.|.+.+.|. +.+.|+++ +..+.. ..++.+. .......|.|.++...|.|.|+|.|.|..|..
T Consensus         7 P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   86 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   86 (97)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             CCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcE
Confidence            35678899999999999999985 79999994 454433 3455543 34556789999999999999999999999864


Q ss_pred             -eeeEEEEE
Q psy12426        299 -KGTAKVTV  306 (616)
Q Consensus       299 -~~~~~l~v  306 (616)
                       ..++.|.+
T Consensus        87 ~~~tv~l~V   95 (97)
T d1epfa1          87 SEATVNVKI   95 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence             44566655

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.2e-10  Score=82.78  Aligned_cols=84  Identities=21%  Similarity=0.205  Sum_probs=66.2

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc-cccccceEEeccccCCCeEEEEEEEEec
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      |.+|.. +.+.....+++.|.|.++. +++.+|.+|.|+++..+...+... .......+.+.+|.+++.|.|+|.|.|.
T Consensus         1 P~~P~~-~~~~~~~~~sv~l~W~~p~-~~~~~I~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~N~   78 (93)
T d2vkwa2           1 PSAPKL-EGQMGEDGNSIKVNLIKQD-DGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQ   78 (93)
T ss_dssp             CCCCEE-EEEECTTSSCEEEEEECCC-CTTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECSCCTTCEEEEEEEEEET
T ss_pred             CCCCcc-CEeEEcCCCEEEEEeeCCC-CCcCceEEEEEEeeecCcceeeeeeccCCceEEEEeccccceEEEEEEEEEcC
Confidence            556665 5677788899999999875 567899999999987655432211 2245678999999999999999999999


Q ss_pred             CcCCCCc
Q psy12426        389 IGESLPL  395 (616)
Q Consensus       389 ~g~~~~~  395 (616)
                      .|.|+++
T Consensus        79 ~G~s~ps   85 (93)
T d2vkwa2          79 QGKSKAA   85 (93)
T ss_dssp             TEECCCE
T ss_pred             CCCcCCE
Confidence            9998874

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=6.8e-10  Score=84.32  Aligned_cols=86  Identities=17%  Similarity=0.196  Sum_probs=62.1

Q ss_pred             CCceEecCCCeEEEEE---EEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426          9 LGDIKLSAGTTLKFDA---NIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C---~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      |.++.+.+|..+.+.|   .+.|+|.|.|+|+|||+.|.....+.-...+..                     .......
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~---------------------~~~~~~~   62 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA---------------------ANETVRH   62 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCC---------------------SSCCCEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeee---------------------eeeeccc
Confidence            5667777787777666   799999999999999999875443322221110                     0001113


Q ss_pred             CceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      ..|.|.++...|.|.|.|.|.|..|....+
T Consensus        63 ~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~   92 (107)
T d1he7a_          63 GCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (107)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEEECcccHHHCcEEEEEEEeCCCEEEEE
Confidence            468999999999999999999999977554

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=9.5e-10  Score=83.29  Aligned_cols=88  Identities=17%  Similarity=0.127  Sum_probs=66.3

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeec-CceeEEEECCeeecc---cCcEEEEecC--CceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEP-IPTKEWLCNDITIIS---KDRFKIVNDD--KSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p-~~~~~W~~~~~~~~~---~~~~~~~~~~--~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      ..+....+..|+++.|.|.+.+.| .|.+.|++++..+..   .........+  ....|.|.++...|.|.|+|.|.|.
T Consensus         8 ~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   87 (104)
T d2aw2a1           8 KRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ   87 (104)
T ss_dssp             CTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcC
Confidence            445678899999999999999998 489999998765432   1222222222  2346999999999999999999999


Q ss_pred             CCCc-eeeEEEEEec
Q psy12426        295 WGTD-KGTAKVTVLD  308 (616)
Q Consensus       295 ~g~~-~~~~~l~v~~  308 (616)
                      .|.. ..++.+.|.+
T Consensus        88 ~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          88 SNLIESHSTTLYVTD  102 (104)
T ss_dssp             TEEEECCCEEEEEEC
T ss_pred             CCeEEEEEEEEEEEE
Confidence            9975 4467776654

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.1e-10  Score=88.53  Aligned_cols=87  Identities=14%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEee-e--cCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIG-E--PVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g-~--P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      ||.+..-.+.+..|.+|+.++|+|.+.| +  |.+.|+|+|||+.|..+..+....                        
T Consensus         1 PP~~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~------------------------   56 (106)
T d1zxqa1           1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAP------------------------   56 (106)
T ss_dssp             CCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTT------------------------
T ss_pred             CCcCCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEee------------------------
Confidence            6766544577888999999999999876 5  445799999999887422211000                        


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcCCCCCC
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGE  113 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~  113 (616)
                        ........|.+......+.+.|.|.|.|..|...
T Consensus        57 --~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~   90 (106)
T d1zxqa1          57 --APQEATATFNSTADREDGHRNFSCLAVLDLMSRG   90 (106)
T ss_dssp             --CTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGT
T ss_pred             --cccceeEEEEEeeehhcCCcEEEEEEEecCCCCC
Confidence              0000123466666677788899999999988553

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=4.1e-09  Score=77.66  Aligned_cols=90  Identities=17%  Similarity=0.214  Sum_probs=69.9

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEec
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      +|..|.+ |.+...+...+.|+|.++.......+..|.+.+...+.. +...  ....+++|.+|.+++.|.|+|+|.|.
T Consensus         2 ~p~~p~~-L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~-~~~~--~~~t~~~i~~L~p~t~Y~~rV~A~n~   77 (94)
T d1x5aa1           2 ESLSGLS-LKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEE-WHQM--VLEPRVLLTKLQPDTTYIVRVRTLTP   77 (94)
T ss_dssp             CCCCSCC-CCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCE-EEEE--ESSSEEEEESCCSSCEEEEEEEEECS
T ss_pred             cCCCCCc-eEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCce-EEEe--eccCEEEECCCCCCCEEEEEEEEEcC
Confidence            4566666 888999999999999987665666778999999876543 2222  23568999999999999999999999


Q ss_pred             CcCCCCccccCCEEccC
Q psy12426        389 IGESLPLVCQSPITAKD  405 (616)
Q Consensus       389 ~g~~~~~~~s~~~~~~~  405 (616)
                      .|.|.++   ..+.+.+
T Consensus        78 ~G~g~~S---~~~~~~T   91 (94)
T d1x5aa1          78 LGPGPFS---PDHEFRT   91 (94)
T ss_dssp             SSCCCCC---CCEEEEC
T ss_pred             CcCcCCC---CCEEEEe
Confidence            9998874   4555443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.5e-11  Score=93.64  Aligned_cols=89  Identities=16%  Similarity=0.168  Sum_probs=66.0

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeee-cCCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGE-PVPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      ||.|.  .++.+.+.+|+.+.|.|.+.|. |.+.+.|++++..+..  .+.|.......                     
T Consensus         7 Pp~i~--~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~---------------------   63 (115)
T d2crya1           7 PPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST---------------------   63 (115)
T ss_dssp             SCCEE--EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEE---------------------
T ss_pred             CCEEe--cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeecc---------------------
Confidence            56665  3677889999999999999985 5568999999998865  34443331110                     


Q ss_pred             ccccCCCCCceEecCcccCC-eEEEEEEEEcCCCCCCCC
Q psy12426         78 CAQTEGDTPKGKVLDLIEGN-QYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~-~~~y~c~a~n~~g~~~~~  115 (616)
                         .......|.|.++...| .|.|.|.|.|..|.....
T Consensus        64 ---~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~   99 (115)
T d2crya1          64 ---EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEI   99 (115)
T ss_dssp             ---TTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEE
T ss_pred             ---ccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEEE
Confidence               01112469999999999 699999999999987655

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.6e-10  Score=83.92  Aligned_cols=70  Identities=16%  Similarity=0.124  Sum_probs=58.1

Q ss_pred             ceEecCCCeEEEEE------EEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426         11 DIKLSAGTTLKFDA------NIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus        11 ~~~v~~g~~v~l~C------~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      .+.+..|+...|.|      .+.|+|.|.|+|+|||++|...+.+.-.                               .
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~-------------------------------~   56 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG-------------------------------V   56 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEE-------------------------------E
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEe-------------------------------c
Confidence            46789999999999      6789999999999999999754443211                               1


Q ss_pred             CCceEecCcccCCeEEEEEEEEcCCCC
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVNKGGP  111 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n~~g~  111 (616)
                      ...|.|.++...|+|.|+|.|.|..|.
T Consensus        57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2          57 KDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             CCEEEEcccccccCcEEEEEEEECcCC
Confidence            457999999999999999999987764

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=7.6e-10  Score=84.48  Aligned_cols=84  Identities=15%  Similarity=0.137  Sum_probs=61.9

Q ss_pred             CCCCCCCCCEE-EEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-----CceEe---EeecCCccEEEcCCCCCCCe
Q psy12426        408 GRPDRPGQPTV-TDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-----PWEKA---CIVPANITATSVPDLKEGEE  478 (616)
Q Consensus       408 ~~p~~p~~~~~-~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-----~~~~~---~~~~~~~~~~~l~~L~p~t~  478 (616)
                      -+|++|.++++ .....++++|+|.++ .+++.++ .|.+.|.....     .+...   .........+++.+|.+++.
T Consensus         3 ~PP~~P~~v~~i~~~~~~sv~~sW~p~-~d~~~~~-~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~   80 (107)
T d1cd9b1           3 YPPASPSNLSCLMHLTTNSLVCQWEPG-PETHLPT-SFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQY   80 (107)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECC-SCCSSCC-EEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSC
T ss_pred             CccCCCcCCEEEEecCCCEEEEEEcCC-CCCCCCc-ceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCce
Confidence            47889999984 566789999999965 4566554 57666655432     22221   12234567899999999999


Q ss_pred             EEEEEEEEcCCCCCC
Q psy12426        479 YEFRVIAVNKGGPGE  493 (616)
Q Consensus       479 Y~~~v~a~n~~G~g~  493 (616)
                      |.|||.|.|..|.|.
T Consensus        81 Y~frV~A~N~~G~s~   95 (107)
T d1cd9b1          81 MAIWVQAENMLGSSE   95 (107)
T ss_dssp             EEEEEEEEETTEEEE
T ss_pred             EEEEEEEEeCCcccc
Confidence            999999999999885

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.6e-09  Score=80.93  Aligned_cols=93  Identities=18%  Similarity=0.252  Sum_probs=70.4

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEE-EccccccceEEeccccCCCeEEEEEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV-PMGDVSGTYTRAENLIEGHDYNFRVKAV  386 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~-~~~~~~~~~~~i~~L~~~~~y~~~v~a~  386 (616)
                      .+|.+|.. +.+...+.+++.|.|.+|... +..+.+|.|+++..+...+. .........++|.+|.+++.|.|+|+|.
T Consensus         2 a~P~~p~~-~~~~~~s~~si~v~W~~P~~~-~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~   79 (98)
T d1x5la1           2 AAPSQVVV-IRQERAGQTSVSLLWQEPEQP-NGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRAR   79 (98)
T ss_dssp             CCCCCCCC-EECSCBCSSCEEEEECCCSCC-CSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCEEEECEEEE
T ss_pred             cCCCCCCc-eEEEeccCCEEEEEEECCCCC-CCCEEEEEEEeecccccceeeEEecCCceEEEECCCCCCCEEEEEEEEE
Confidence            45666666 778888999999999987665 44789999999875443221 2223456789999999999999999999


Q ss_pred             ecCcCCCCccccCCEEccC
Q psy12426        387 NKIGESLPLVCQSPITAKD  405 (616)
Q Consensus       387 n~~g~~~~~~~s~~~~~~~  405 (616)
                      |..|.|.++   ..+.+.+
T Consensus        80 n~~G~g~~S---~~v~~~T   95 (98)
T d1x5la1          80 TSAGCGRFS---QAMEVET   95 (98)
T ss_dssp             ETTEECCCC---CCEEEEC
T ss_pred             cCCCCcCCC---CCEEEEc
Confidence            999988774   4455443

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.93  E-value=1.3e-10  Score=88.69  Aligned_cols=81  Identities=12%  Similarity=0.095  Sum_probs=57.8

Q ss_pred             CceEecCCCeEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426         10 GDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      ++.++.+|+.+.|.|.+ .|.|.|.|.|+|++..+...+...-.                        ...........|
T Consensus        10 ~~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~------------------------~~~~~~~~~~~L   65 (111)
T d1biha2          10 HEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDF------------------------DRRITAGPDGNL   65 (111)
T ss_dssp             EEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCC------------------------CTTEEECTTSCE
T ss_pred             ccccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceee------------------------eeeecccccccc
Confidence            46678999999999996 89999999999998776532211000                        000002235679


Q ss_pred             EecCcccCCeE---EEEEEEEcCCCCCCC
Q psy12426         89 KVLDLIEGNQY---EFRVLAVNKGGPGEP  114 (616)
Q Consensus        89 ~i~~l~~~~~~---~y~c~a~n~~g~~~~  114 (616)
                      .|.+++..|.|   .|.|.|.|..|....
T Consensus        66 ~i~~v~~~D~gd~g~Y~C~A~N~~g~~~~   94 (111)
T d1biha2          66 YFTIVTKEDVSDIYKYVCTAKNAAVDEEV   94 (111)
T ss_dssp             EEEEECGGGCCSSEEEEEEEECTTCSSCE
T ss_pred             EEeeeEeeccCCceEEEEEEEeCCCCceE
Confidence            99998887665   799999999986643

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=9.2e-10  Score=83.16  Aligned_cols=90  Identities=27%  Similarity=0.373  Sum_probs=69.3

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEec
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      .|.+|.+ +.+...+.+++.|+|.+|..   ..+.+|.|+++......+..........+.+.+|.+++.|.|+|.|.|.
T Consensus        10 vP~~P~~-~~~~~~~~~si~l~W~~p~~---~~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   85 (102)
T d1x5za1          10 VPGQPLN-FKAEPESETSILLSWTPPRS---DTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSP   85 (102)
T ss_dssp             CCCCCEE-EEEECSSSSEEEEEEECCSC---CCCCEEEECBEESSSCCCBCCEECSSSEEEEECCCTTCEEEECEEEECS
T ss_pred             CCcCCCC-eEEEEccCCEEEEEEECCCC---CCccceEEEEEeCCCCceEEEEcCCcCEEEECCCCCCCEEEEEEEEEcC
Confidence            4555555 67777888999999998643   3689999999887666555444455678999999999999999999999


Q ss_pred             CcCCCCccccCCEEccC
Q psy12426        389 IGESLPLVCQSPITAKD  405 (616)
Q Consensus       389 ~g~~~~~~~s~~~~~~~  405 (616)
                      .|.|.+   +..+.+.+
T Consensus        86 ~G~g~~---S~~v~~~T   99 (102)
T d1x5za1          86 QGLGAS---TAEISART   99 (102)
T ss_dssp             SCEEEE---CCCEEEEC
T ss_pred             CCEeCC---CCCEEEEc
Confidence            998876   34444443

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=3.2e-09  Score=78.86  Aligned_cols=84  Identities=15%  Similarity=0.203  Sum_probs=67.0

Q ss_pred             CCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCEEEc--cccccceEEeccccCCCeEEEEEEEEe
Q psy12426        311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPM--GDVSGTYTRAENLIEGHDYNFRVKAVN  387 (616)
Q Consensus       311 ~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~--~~~~~~~~~i~~L~~~~~y~~~v~a~n  387 (616)
                      .+|.. +.+..++.+++.|.|+.|...++..+.+|.|.|+..+. ..|...  .......+.|.+|.+++.|.|+|.|.|
T Consensus         8 ~~P~~-~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   86 (95)
T d2ibga1           8 PVPEL-LEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFS   86 (95)
T ss_dssp             CCCEE-CCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECSCCTTCEEEEEEEEEC
T ss_pred             CCCcC-eEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEeeccCCeEEEEEEEEEe
Confidence            34554 77888889999999998777667789999999987543 344433  235567899999999999999999999


Q ss_pred             cCcCCCCc
Q psy12426        388 KIGESLPL  395 (616)
Q Consensus       388 ~~g~~~~~  395 (616)
                      ..|.++++
T Consensus        87 ~~G~s~~S   94 (95)
T d2ibga1          87 AASASEFS   94 (95)
T ss_dssp             SSCBCCCC
T ss_pred             CCccCCCC
Confidence            99998764

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.3e-09  Score=79.24  Aligned_cols=88  Identities=7%  Similarity=0.077  Sum_probs=66.9

Q ss_pred             ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC-CCCEEEcc--ccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        317 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME-TGRWVPMG--DVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       317 ~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~-~~~~~~~~--~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ..+.....+++.|+|.++... +..+..|.|+|+... ...|....  ......+.|.+|.+++.|.|+|+|.|..|.|.
T Consensus        13 p~~~~~~~~~v~l~W~pp~~~-~~~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frVra~n~~g~G~   91 (105)
T d2d9qb2          13 PEAAPPQAGCLQLSWEPWQPG-LHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGH   91 (105)
T ss_dssp             ------CCSCEEEEEECCGGG-TTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCC
T ss_pred             CEeecCCCCeEEEEEcCCCCC-CceeEEEEEEEEecCCccceeeeecccCCcceeEEecccCCeEEEEEEEEEeCCCCCC
Confidence            455667788999999987654 447889999998643 44565543  34567899999999999999999999999999


Q ss_pred             CccccCCEEccC
Q psy12426        394 PLVCQSPITAKD  405 (616)
Q Consensus       394 ~~~~s~~~~~~~  405 (616)
                      +++++..+.+++
T Consensus        92 ~S~wS~~~~~~t  103 (105)
T d2d9qb2          92 WSDWSPSLELRT  103 (105)
T ss_dssp             CCCCCCCEEECC
T ss_pred             CcCCCCCEEEeC
Confidence            999888887764

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=5.1e-09  Score=77.41  Aligned_cols=89  Identities=19%  Similarity=0.182  Sum_probs=72.6

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEec
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      .|.+|.+ |.+..+..+.+.|+|..|..   ..+..|.|+++..+...|..........+++.+|.+++.|.|+|+|.+.
T Consensus         2 ~P~~P~n-l~v~~~~~~~v~l~W~~p~~---~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frVRa~~~   77 (95)
T d2b5ic1           2 IPWAPEN-LTLHKLSESQLELNWNNRFL---NHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFN   77 (95)
T ss_dssp             ECCCCEE-EEEEEEETTEEEEEEECSSC---STTCEEEEEEEETTCSSCEEEEECSSCEEEECSCCTTSCEEEEEEEECC
T ss_pred             CCcCCCC-CEEEEEeCCEEEEEECCCCC---ceeEEEEEEEEcCCCceeeEeeecccceeEcCCCCCCCEEEEEEEEeeC
Confidence            4778887 88888999999999997643   3578899999998888888776667788999999999999999999876


Q ss_pred             Cc---CCCCccccCCE
Q psy12426        389 IG---ESLPLVCQSPI  401 (616)
Q Consensus       389 ~g---~~~~~~~s~~~  401 (616)
                      .+   .+.+++++..+
T Consensus        78 ~~~~~~g~WSeWS~pv   93 (95)
T d2b5ic1          78 PLCGSAQHWSEWSHPI   93 (95)
T ss_dssp             SSSCCCCCCCCCCCCE
T ss_pred             CCCCCCCCccCCCCce
Confidence            54   34466666654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=1.3e-09  Score=83.74  Aligned_cols=84  Identities=24%  Similarity=0.338  Sum_probs=62.7

Q ss_pred             eEEEcCCeEEEEEEEe-eecCceeEEEECCeeecccCcEE--------EEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        226 IKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIISKDRFK--------IVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~-~~p~~~~~W~~~~~~~~~~~~~~--------~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      ..+..|+++.|.|.+. +.|.+.+.|++++..+.......        .........|.|.+++..|.|.|+|.|.|..|
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            3578999999999985 79999999999998765433222        22233445899999999999999999999999


Q ss_pred             Ccee--eEEEEEecC
Q psy12426        297 TDKG--TAKVTVLDI  309 (616)
Q Consensus       297 ~~~~--~~~l~v~~~  309 (616)
                      ....  .+.+.|.+.
T Consensus        92 ~~~~s~~v~l~V~~l  106 (110)
T d1f97a2          92 TAMRSEAAHMDAVEL  106 (110)
T ss_dssp             CCEECCCEEEEEESS
T ss_pred             cEEEEEEEEEEEEec
Confidence            7644  555555543

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.6e-09  Score=81.81  Aligned_cols=99  Identities=17%  Similarity=0.256  Sum_probs=75.5

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      |.+|.+ +.+..++.+++.|+|.++.    ..+.+|.|+++..+...+..........+.|.+|.+++.|.|+|.|.+..
T Consensus         1 P~~P~~-l~~~~~t~~si~l~W~~p~----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~a~~~~   75 (102)
T d2cuha1           1 PDGPTQ-LRALNLTEGFAVLHWKPPQ----NPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGP   75 (102)
T ss_dssp             CSSCEE-EECCCCSSSCEEEEEECCS----SCCSEEEEEEECSSSCCEEEEEETTCSEEEECSCCSSSEEEEEEEEEETT
T ss_pred             CcCCCc-cEEEEeCCCEEEEEEEeee----ccceeeEEEEEeccccceeeeeeeeeeeEEEccEEeeEEEEEEEEEEeCC
Confidence            456666 7788889999999999753    35789999998877767766656667889999999999999999999988


Q ss_pred             cCCCCccccCCEEccCCCCCCCCCCCCEEEE
Q psy12426        390 GESLPLVCQSPITAKDPFGRPDRPGQPTVTD  420 (616)
Q Consensus       390 g~~~~~~~s~~~~~~~~~~~p~~p~~~~~~~  420 (616)
                      |.+...    .+.+.+   .+.+|.++.+..
T Consensus        76 ~~s~~~----~~~~~T---~~~~P~~l~~~~   99 (102)
T d2cuha1          76 NLTSPA----SITFTT---GLEAPRDLEAKE   99 (102)
T ss_dssp             EECCCE----EEEEES---CCCCTTTSSSCC
T ss_pred             CCcCCE----EEEEEC---CCCCCCCCEeec
Confidence            877653    233333   345676766543

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=7.8e-09  Score=78.24  Aligned_cols=81  Identities=19%  Similarity=0.327  Sum_probs=65.5

Q ss_pred             CeEEEEEeCCCCC---CCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCccccCCE
Q psy12426        325 SSCNLEWRAPRDD---GGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPLVCQSPI  401 (616)
Q Consensus       325 ~~~~l~W~~~~~~---~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~~~s~~~  401 (616)
                      ..+.|+|++|...   ++..+..|.++++..+...|..........+.+.+|.+++.|.|+|+|.+.. .+.++.++..+
T Consensus        21 ~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~~~~~~~~~~~~i~~L~~~t~Y~frVRa~~~~-~g~ws~wS~~v   99 (106)
T d1axib2          21 ADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRN-SGNYGEFSEVL   99 (106)
T ss_dssp             EEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCEECCCBSSSEEEEEEEETTSCEEEEEEEEETT-SSCCCCCCCCE
T ss_pred             CeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccceeeeecccceEEECCCCCCCEEEEEEEEEECC-CCCCCCCCCCE
Confidence            3699999988653   2346789999999988889998887777899999999999999999999854 34566667777


Q ss_pred             EccCC
Q psy12426        402 TAKDP  406 (616)
Q Consensus       402 ~~~~~  406 (616)
                      .+.++
T Consensus       100 ~v~~P  104 (106)
T d1axib2         100 YVTLP  104 (106)
T ss_dssp             EECCC
T ss_pred             EEECC
Confidence            77643

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.4e-09  Score=79.74  Aligned_cols=87  Identities=26%  Similarity=0.300  Sum_probs=69.8

Q ss_pred             ecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC-EEEccccccceEEeccccCCCeEEEEEEE
Q psy12426        307 LDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR-WVPMGDVSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       307 ~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~-~~~~~~~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      ..+|.+|.. +.+...+.+++.|+|.+|.. ++.++..|.++++...... +..........+.+.+|.+++.|.|+|+|
T Consensus         8 ~~~P~~P~~-~~~~~~~~~sv~l~W~pp~~-~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~frV~A   85 (105)
T d1x3da1           8 SCEPDIPNP-PRIANRTKNSLTLQWKAPSD-NGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSA   85 (105)
T ss_dssp             CSCCCCCCC-CEEEEEETTEEEEECCCCCC-CSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEESCCTTCEEEEECCE
T ss_pred             CCCCcCCCC-CEEEEccCCEEEEEEECCCC-CcCccEEEEEEEecCCCcceeEEEecCCccEEEecCCcCCcEEEEEEEE
Confidence            346677776 67888899999999998754 5668999999998644433 44444556778999999999999999999


Q ss_pred             EecCcCCCCc
Q psy12426        386 VNKIGESLPL  395 (616)
Q Consensus       386 ~n~~g~~~~~  395 (616)
                      .|..|.|.++
T Consensus        86 ~N~~G~s~~S   95 (105)
T d1x3da1          86 RNDYGTSGFS   95 (105)
T ss_dssp             EESSCBCCCC
T ss_pred             ECCCeEcCCC
Confidence            9999998874

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=6.8e-10  Score=81.43  Aligned_cols=78  Identities=13%  Similarity=0.023  Sum_probs=61.8

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeeecC-ceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGEPI-PTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      .+|.+. ..+..+.+.+|+++.|.|.+.+.|. +.+.|+|++..+....+......+   .|.|.+++.+|+|.|+|.|.
T Consensus         5 ~~P~~~-~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~   80 (93)
T d1n26a1           5 RCPAQE-VARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR---RLLLRSVQLHDSGNYSCYRA   80 (93)
T ss_dssp             CCCCCC-CCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESS---EEEECSCCGGGCEEEEEESS
T ss_pred             CCCcEE-eCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCC---EEEECCCChhcCEEEEEEEC
Confidence            345553 3456788899999999999998765 589999999888766655544443   89999999999999999997


Q ss_pred             cCC
Q psy12426        293 NSW  295 (616)
Q Consensus       293 n~~  295 (616)
                      |..
T Consensus        81 n~~   83 (93)
T d1n26a1          81 GRP   83 (93)
T ss_dssp             SSC
T ss_pred             Ccc
Confidence            643

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=5.6e-09  Score=81.38  Aligned_cols=94  Identities=17%  Similarity=0.101  Sum_probs=71.0

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEE----EeCCCCCEEEccccccceEEeccccCCCeEEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEK----MDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRV  383 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~----~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v  383 (616)
                      .+|.+|.+ +.+..++.+++.|.|.+|..+++..+..|.++|    .+.....|..........+.+.+|.+++.|.|+|
T Consensus        14 ~pp~~P~~-p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~frV   92 (120)
T d1wfua_          14 VPLSKPHP-PVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRL   92 (120)
T ss_dssp             CCCCCCCC-CBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEESCCTTCEEEEEE
T ss_pred             cCCCcCCC-CEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeeccccccEEeCCCCCCCcEeeEEE
Confidence            35566665 467778899999999988777666665555444    4455567777766667789999999999999999


Q ss_pred             EEEecCcCCCCccccCCEEccC
Q psy12426        384 KAVNKIGESLPLVCQSPITAKD  405 (616)
Q Consensus       384 ~a~n~~g~~~~~~~s~~~~~~~  405 (616)
                      +|.|..|.+.++   ..+.+.+
T Consensus        93 ~A~n~~G~s~~S---~~~~~~T  111 (120)
T d1wfua_          93 KVTSPSGEYEYS---PVVSVAT  111 (120)
T ss_dssp             EEECSSSCEEEC---CCEEEEC
T ss_pred             EEEeCCcEeCCC---CCEEEEe
Confidence            999999998774   4555544

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=6.9e-09  Score=78.64  Aligned_cols=87  Identities=7%  Similarity=0.041  Sum_probs=68.3

Q ss_pred             cceeecCCeEEEEEeCCCCCCCCceEEEEEEEEe-CCCCCEEEccc--cccceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426        318 KPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMD-METGRWVPMGD--VSGTYTRAENLIEGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       318 ~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~-~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~  394 (616)
                      .+.....+++.|+|+++... +..+..|.|+|+. .+...|.....  .....+.+.+|.+++.|.|+|+|.|..|.|.+
T Consensus        15 ~~~~~~~~~i~v~W~pp~~~-~~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~L~p~t~Y~frVra~~~~g~g~w   93 (106)
T d1cd9b2          15 DVVSHQPGCLWLSWKPWKPS-EYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFW   93 (106)
T ss_dssp             -----CCSCEEEEEECCGGG-TTSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCC
T ss_pred             eEecCCCCEEEEEEcCcccC-CccceEEEEEEeeccccccceeeecccCCceEEEEeccCCCeEEEEEEEEEeCCCCCCC
Confidence            45667788999999987654 4578999999986 45567776654  45678899999999999999999999999999


Q ss_pred             ccccCCEEccC
Q psy12426        395 LVCQSPITAKD  405 (616)
Q Consensus       395 ~~~s~~~~~~~  405 (616)
                      ++++..+.+++
T Consensus        94 S~wS~~~~~~~  104 (106)
T d1cd9b2          94 SPWSPGLQLRP  104 (106)
T ss_dssp             CCCCCCEEECC
T ss_pred             cCCCCCeEecC
Confidence            99888888753

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=5.7e-10  Score=86.62  Aligned_cols=103  Identities=18%  Similarity=0.310  Sum_probs=78.2

Q ss_pred             CCCCCCCCccce--eecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc----cccceEEeccccCCCeEEEE
Q psy12426        309 IPSPPEGPLKPS--NITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD----VSGTYTRAENLIEGHDYNFR  382 (616)
Q Consensus       309 ~p~~p~~~~~~~--~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~----~~~~~~~i~~L~~~~~y~~~  382 (616)
                      +|.+|.+ +.+.  .....++.|+|.++... +..+..|.|+++......|.....    .....+.|.+|.+++.|.|+
T Consensus         4 kP~pP~~-~~v~~~~~~~~si~v~W~~p~~~-~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~   81 (115)
T d1bqua2           4 KPNPPHN-LSVINSEELSSILKLTWTNPSIK-SVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR   81 (115)
T ss_dssp             ECCCCEE-EEEECC--CCSCEEEEEECCGGG-GTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECSCCSSEEEEEE
T ss_pred             ECCCCCC-CEEEEeccCCCEEEEEEeecccc-ccceeeeeeeeeeeeeeeeeccccccccccccEEeeCCCccCcEEEEE
Confidence            4566765 4443  45577899999976654 447889999999877777765432    44568999999999999999


Q ss_pred             EEEEecCcCCCCccccCCEEccCCCCCCCCC
Q psy12426        383 VKAVNKIGESLPLVCQSPITAKDPFGRPDRP  413 (616)
Q Consensus       383 v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p  413 (616)
                      |+|.|..|.+.++.++..+.+.+...+|.+|
T Consensus        82 V~a~~~~G~g~~S~~S~~~~~~T~~~~P~~~  112 (115)
T d1bqua2          82 IRCMKEDGKGYWSDWSEEASGITYEDRPSKE  112 (115)
T ss_dssp             EEEEETTSCSCCCCCCCCEEEEECCCHHHHH
T ss_pred             EEEEeCCCccCCcCCcCCEEEECCCCCCCCC
Confidence            9999999999888888888877666655443

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.3e-10  Score=86.99  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=62.2

Q ss_pred             ceEEEcCCeEEEEEEE-eeecCceeEEEECCeeecccCcEEEEe-------cCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        225 DIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISKDRFKIVN-------DDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      ...+..|+.+.|.|.+ .|.|.+.+.|++++..+....+.....       ......|.|.++...|.|.|+|.|.|..|
T Consensus        11 ~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          11 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence            4567899999999998 489999999999998876543322211       12245789999999999999999999999


Q ss_pred             CceeeEEE
Q psy12426        297 TDKGTAKV  304 (616)
Q Consensus       297 ~~~~~~~l  304 (616)
                      ....+..+
T Consensus        91 ~~~~s~~v   98 (104)
T d1nbqa2          91 TPMTSNAV   98 (104)
T ss_dssp             CCEECCCB
T ss_pred             ceEEEEEE
Confidence            87655433

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=2.3e-09  Score=81.65  Aligned_cols=90  Identities=21%  Similarity=0.356  Sum_probs=65.3

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC-CCEEEccc-------------cccceEEeccccCCC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET-GRWVPMGD-------------VSGTYTRAENLIEGH  377 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~-~~~~~~~~-------------~~~~~~~i~~L~~~~  377 (616)
                      ||.. +.+..++.+++.|+|.+|.+ ++.+|.+|.|+++.... ..|.....             .....+++.+|.+++
T Consensus         2 PP~~-p~v~~~~~~sv~l~W~~P~~-~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t   79 (107)
T d2ic2a1           2 PPTP-PNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQH   79 (107)
T ss_dssp             CCCC-CEEEECC---EEEEEEEECC-SSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSE
T ss_pred             cCcC-CEEEEEECCEEEEEEEeCcc-ccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCc
Confidence            3444 35778889999999998864 56799999999986432 34443321             224578999999999


Q ss_pred             eEEEEEEEEecCcCCCCccccCCEEc
Q psy12426        378 DYNFRVKAVNKIGESLPLVCQSPITA  403 (616)
Q Consensus       378 ~y~~~v~a~n~~g~~~~~~~s~~~~~  403 (616)
                      .|.|+|.|.|..|.+.++..+..+..
T Consensus        80 ~Y~frV~A~N~~G~s~~S~~s~~~~~  105 (107)
T d2ic2a1          80 TYRFRILAVYSNNDNKESNTSAKFYL  105 (107)
T ss_dssp             EEEEEEEEEETTSCEEECCCCCCEEE
T ss_pred             EEEEEEEEEcCCCCCCCCCCCCCEEc
Confidence            99999999999999988876666553

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.2e-09  Score=78.32  Aligned_cols=89  Identities=20%  Similarity=0.246  Sum_probs=67.3

Q ss_pred             CCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEE-EccccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV-PMGDVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       311 ~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~-~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      ..|.. +.+...+.+++.|.|.+|...+ ..+..|.++++......+. .........+.+.+|.+++.|.|+|+|.|..
T Consensus         2 ~~~~~-l~~~~~t~~si~l~W~~p~~~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   79 (95)
T d2djsa1           2 STVPI-MHQVSATMRSITLSWPQPEQPN-GIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVA   79 (95)
T ss_dssp             CCCSC-CEEEEECSSEEEEECCCCSCCS-SCEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEEEEEEEESS
T ss_pred             CCCCc-cEEEeecCCEEEEEEEECCCCC-cceEEeeeeeeeeccCcceeEeecCCccEEEEeecCCccEEEEEEEEEcCC
Confidence            33444 7788899999999999876654 4899999999876544332 2223456789999999999999999999999


Q ss_pred             cCCCCccccCCEEcc
Q psy12426        390 GESLPLVCQSPITAK  404 (616)
Q Consensus       390 g~~~~~~~s~~~~~~  404 (616)
                      |.|.++   ..+.+.
T Consensus        80 G~g~~S---~~~~~~   91 (95)
T d2djsa1          80 GYGKFS---GKMCFQ   91 (95)
T ss_dssp             CEEEEC---CCEEEE
T ss_pred             CCCCCC---CCEEEE
Confidence            988764   444444

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=1e-08  Score=77.32  Aligned_cols=93  Identities=17%  Similarity=0.202  Sum_probs=69.9

Q ss_pred             CCCCCCCCccce----eecCCeEEEEEeCCCC---CCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEE
Q psy12426        309 IPSPPEGPLKPS----NITKSSCNLEWRAPRD---DGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNF  381 (616)
Q Consensus       309 ~p~~p~~~~~~~----~~~~~~~~l~W~~~~~---~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~  381 (616)
                      +|.+|.+ +.+.    ......+.|+|++|..   .++..+..|.++++..+...|........+.+.+.+|.+++.|.|
T Consensus         2 kP~pP~n-l~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   80 (103)
T d1f6fb2           2 EPEPPRN-LTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTGHQTQFKVFDLYPGQKYLV   80 (103)
T ss_dssp             CCCCCEE-EEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCEEEEEETCSEEEECCCCTTCEEEE
T ss_pred             CCCCCCC-CEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCcceeeecccceeEEEeCCCCcceEEEE
Confidence            4677776 4443    3455679999998754   234578899999999888888877666678899999999999999


Q ss_pred             EEEEEecCcCCCCccccCCEEcc
Q psy12426        382 RVKAVNKIGESLPLVCQSPITAK  404 (616)
Q Consensus       382 ~v~a~n~~g~~~~~~~s~~~~~~  404 (616)
                      +|+|.|..|.  ++.++....+.
T Consensus        81 rVra~~~~G~--wS~wS~~~~~~  101 (103)
T d1f6fb2          81 QTRCKPDHGY--WSRWSQESSVE  101 (103)
T ss_dssp             EEEEEESSSC--CCCCCCCEEEE
T ss_pred             EEEEEeCCCC--CCCCcCceeeE
Confidence            9999998874  34445555543

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.2e-09  Score=78.20  Aligned_cols=86  Identities=13%  Similarity=0.127  Sum_probs=59.2

Q ss_pred             CCCCCCCCEEEEe-cCCeEEEEecCCCCC---CCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEE
Q psy12426        409 RPDRPGQPTVTDW-GKDHVDLEWTPPKKD---GGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRV  483 (616)
Q Consensus       409 ~p~~p~~~~~~~~-~~~~v~l~W~~p~~~---~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v  483 (616)
                      .|+||.++.+... ..+.+.|+|.+|...   .+.-...|+|+|+..++ .|.......  .+.   .+|.|++.|.|+|
T Consensus         1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~~--~t~---~~L~p~~~Y~v~V   75 (94)
T d3d85d3           1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTD--KTS---ATVICRKNASISV   75 (94)
T ss_dssp             CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEES--SSE---EEECCCSSCEEEE
T ss_pred             CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEecccc--ceE---EEecCCCCEEEEE
Confidence            4889999998765 356799999988642   22236789999998776 555443332  223   3478999999999


Q ss_pred             EEEcCCCCCCCCCCCC
Q psy12426        484 IAVNKGGPGEPSKASA  499 (616)
Q Consensus       484 ~a~n~~G~g~~s~~~~  499 (616)
                      +|.+..|.|.+|+.+.
T Consensus        76 Ra~~~~~~g~WSeWS~   91 (94)
T d3d85d3          76 RAQDRYYSSSWSEWAS   91 (94)
T ss_dssp             EEEESSSCCCCCCCEE
T ss_pred             EEecCCCCCCCccCcC
Confidence            9999999999988654

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.6e-09  Score=82.17  Aligned_cols=92  Identities=30%  Similarity=0.449  Sum_probs=68.3

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC---EEE----ccccccceEEeccccCCCeEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR---WVP----MGDVSGTYTRAENLIEGHDYNF  381 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~---~~~----~~~~~~~~~~i~~L~~~~~y~~  381 (616)
                      .|.+|.+ +.+.....+++.|+|.++. +++..+..|.++++......   |..    ........+.+.+|.+++.|.|
T Consensus        10 ~P~~P~~-~~~~~~~~~sv~l~W~pp~-~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~Y~f   87 (111)
T d1wisa1          10 LPGPPTN-LGISNIGPRSVTLQFRPGY-DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSF   87 (111)
T ss_dssp             CCCCCEE-EEEESCCSSCEEEEEECCC-CCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECSCCTTSEECC
T ss_pred             CCcCCCC-CEEEEcCCCEEEEEEeCCC-CCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCCCCCCCEEEE
Confidence            4555555 5666678899999999765 45678999999987533322   222    1234566799999999999999


Q ss_pred             EEEEEecCcCCCCccccCCEE
Q psy12426        382 RVKAVNKIGESLPLVCQSPIT  402 (616)
Q Consensus       382 ~v~a~n~~g~~~~~~~s~~~~  402 (616)
                      +|+|.|..|.|.++..+..+.
T Consensus        88 rV~A~N~~G~s~~S~~s~~~~  108 (111)
T d1wisa1          88 RMRQVNIVGTSPPSQPSRKIQ  108 (111)
T ss_dssp             CCEEECSSCBCCCCCCCCCEE
T ss_pred             EEEEEcCCcCCCCcCCCCCEE
Confidence            999999999998877665544

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.4e-09  Score=79.18  Aligned_cols=94  Identities=17%  Similarity=0.126  Sum_probs=64.0

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCC--CceEEEEEEEEeCCCCCEEEcc----ccccceEEeccccCCCeEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGG--TDILHYVVEKMDMETGRWVPMG----DVSGTYTRAENLIEGHDYNFR  382 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~--~~i~~y~v~~~~~~~~~~~~~~----~~~~~~~~i~~L~~~~~y~~~  382 (616)
                      +|.+|.+ +.+.....+++.|+|..|...++  .....|.++++..+...|....    ......+.+.+|.+++.|.|+
T Consensus         1 kP~~P~~-l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~r   79 (101)
T d1iarb2           1 KPRAPGN-LTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRAR   79 (101)
T ss_dssp             CCCCCEE-EEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-----CCCEEEE
T ss_pred             CcccCCc-CEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECCCCCCCEEEEE
Confidence            4677877 77878888999999998765443  2345799999876665554322    234567889999999999999


Q ss_pred             EEEEecCcCCCCccccCCEEc
Q psy12426        383 VKAVNKIGESLPLVCQSPITA  403 (616)
Q Consensus       383 v~a~n~~g~~~~~~~s~~~~~  403 (616)
                      |+|.|..|.|.+++++..++.
T Consensus        80 VrA~~~~g~g~wSewS~~v~~  100 (101)
T d1iarb2          80 VRAWAQAYNTTWSEWSPSTKW  100 (101)
T ss_dssp             EEEECGGGTCCCCCCCCCEEE
T ss_pred             EEEEcCCCCCCCcCCCCCEEE
Confidence            999999999999888876653

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.4e-09  Score=77.08  Aligned_cols=77  Identities=13%  Similarity=0.065  Sum_probs=61.7

Q ss_pred             eEEEcCCeEEEEEEEeee-cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEE
Q psy12426        226 IKVRAGSNFEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAK  303 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~  303 (616)
                      ..+.+|+.+.|.|.+.+. +...+.|+|++..+....        ....|.|.+++.+|+|.|+|.|.|..|.. +..+.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~   81 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLN   81 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc--------ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEE
Confidence            457899999999999766 556899999998764321        22479999999999999999999987754 46677


Q ss_pred             EEEecCC
Q psy12426        304 VTVLDIP  310 (616)
Q Consensus       304 l~v~~~p  310 (616)
                      ++|..+|
T Consensus        82 i~V~~~P   88 (89)
T d1f2qa2          82 ITVIKAP   88 (89)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            8887766

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.85  E-value=4e-09  Score=76.54  Aligned_cols=75  Identities=11%  Similarity=0.170  Sum_probs=59.2

Q ss_pred             eEEEcCCeEEEEEEEeee-cCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEE
Q psy12426        226 IKVRAGSNFEFDINVIGE-PIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAK  303 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~  303 (616)
                      ..+.+|+.+.|.|.+.+. |.+.+.|+|++..+...        .....|.|.++..+|+|.|+|.|.|..|.. +..+.
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~--------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~   81 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS--------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVT   81 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc--------ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEE
Confidence            457899999999999754 66799999999875422        223489999999999999999999988764 45666


Q ss_pred             EEEec
Q psy12426        304 VTVLD  308 (616)
Q Consensus       304 l~v~~  308 (616)
                      +.|..
T Consensus        82 l~V~~   86 (88)
T d2fcba2          82 ITVQA   86 (88)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            77654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.6e-09  Score=79.30  Aligned_cols=77  Identities=14%  Similarity=0.272  Sum_probs=60.9

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccC-cEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceeeE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKD-RFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGTA  302 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~~  302 (616)
                      ....+.+|+++.|.|.+.+ +.+.+.|.+++..+.... ++.+..++   .|.|.++.+.|+|.|+|.|.|..|......
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~---~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~   80 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK---NLLIFNLSEGDSGVYQCLSEERVKNKTVFQ   80 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT---CEEECSCCGGGCEEEEEEEEEECSSSEEEE
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee---EEEECCCCHHHCcEEEEEEEEcCCCEEEEE
Confidence            4577899999999999988 678999999998876543 33333222   799999999999999999999888765444


Q ss_pred             EE
Q psy12426        303 KV  304 (616)
Q Consensus       303 ~l  304 (616)
                      .+
T Consensus        81 ~l   82 (92)
T d1olza1          81 VV   82 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.7e-09  Score=82.17  Aligned_cols=84  Identities=20%  Similarity=0.316  Sum_probs=62.1

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEE--EEec--C----CceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFK--IVND--D----KSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~--~~~~--~----~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      +..+.+.+|+++.|.|.+.+.|.|.+.|++++..+.......  ....  +    ....|.|.++...|.|.|+|.|.|.
T Consensus        11 ~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   90 (105)
T d1nbqa1          11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE   90 (105)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred             CCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEEC
Confidence            345778899999999999999999999999765433211110  0000  0    0137999999999999999999999


Q ss_pred             CCCceeeEEEEE
Q psy12426        295 WGTDKGTAKVTV  306 (616)
Q Consensus       295 ~g~~~~~~~l~v  306 (616)
                      .|.......+.+
T Consensus        91 ~G~~~~~~~v~v  102 (105)
T d1nbqa1          91 GGNSYGEVKVKL  102 (105)
T ss_dssp             TSSCEECCEEEC
T ss_pred             CCCEEEEEEEEE
Confidence            998876665544

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6.3e-09  Score=77.05  Aligned_cols=83  Identities=20%  Similarity=0.362  Sum_probs=66.6

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc-ccccceEEeccccCCCeEEEEEEEEec
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      |.+|.  +.+.....+++.|+|.+|... +..+.+|.|+++..+...|.... .....++.+.+|.+++.|.|+|.|.|.
T Consensus         1 P~~P~--~~~~~~~~~sv~l~W~pP~~~-~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   77 (94)
T d2dn7a1           1 PGRPT--MMISTTAMNTALLQWHPPKEL-PGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNR   77 (94)
T ss_dssp             CCCCE--EEEEECSTTEEEEEEECCSSC-SSCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEEEEEEEET
T ss_pred             CCCCc--EeEEEEeCCEEEEEEeCCCCC-CCceEEEEEEEEEcCCCCcEEEEcCCCccEEEEEccCCeeEEEEEEEEEcC
Confidence            34554  345667888999999987665 45899999999987777776554 355678999999999999999999999


Q ss_pred             CcCCCCc
Q psy12426        389 IGESLPL  395 (616)
Q Consensus       389 ~g~~~~~  395 (616)
                      .|.|.++
T Consensus        78 ~G~g~~s   84 (94)
T d2dn7a1          78 AGLGEEF   84 (94)
T ss_dssp             TEEEEEE
T ss_pred             CcCCCCc
Confidence            9998764

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=6e-09  Score=77.71  Aligned_cols=71  Identities=13%  Similarity=0.155  Sum_probs=58.8

Q ss_pred             ceEEEcCCeEEEEE------EEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc
Q psy12426        225 DIKVRAGSNFEFDI------NVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD  298 (616)
Q Consensus       225 ~~~v~~g~~~~l~c------~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~  298 (616)
                      ...+..|....|.|      .+.+.|.|.+.|++++..+..+.+......+   .|.|.++...|+|.|+|.|.|..|..
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCC---EEEEcccccccCcEEEEEEEECcCCE
Confidence            35678999999999      5678899999999999998766554444443   89999999999999999999977644

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.4e-09  Score=81.37  Aligned_cols=97  Identities=21%  Similarity=0.227  Sum_probs=71.0

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCC-CCCceEEEEEEEEeCCCCCEEEcc--ccccceEEeccccCCCeEEEEEEEEec
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDD-GGTDILHYVVEKMDMETGRWVPMG--DVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~-~~~~i~~y~v~~~~~~~~~~~~~~--~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      +|.+ +.+...+.+++.|+|.++... .+..+.+|.|+|+..+...+....  ......+.|.+|.+++.|.|+|+|.|.
T Consensus        14 ~P~~-v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~   92 (119)
T d1x5ha1          14 APQN-LSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTI   92 (119)
T ss_dssp             CCEE-EEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEECCCSSCEEEEECEEEET
T ss_pred             CCcC-eEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCCCCCCCEEEEEEEEEcC
Confidence            4554 667778888999999976432 345799999999876655444332  245678999999999999999999999


Q ss_pred             CcCCCCccccCCEEccCCCCCCCC
Q psy12426        389 IGESLPLVCQSPITAKDPFGRPDR  412 (616)
Q Consensus       389 ~g~~~~~~~s~~~~~~~~~~~p~~  412 (616)
                      .|.|.++   ..+.+.+....+..
T Consensus        93 ~G~G~~S---~~~~~~T~~~~~~~  113 (119)
T d1x5ha1          93 NGTGPAT---DWLSAETFESDLDE  113 (119)
T ss_dssp             TEEEEEC---CCEEEECCSSCCCC
T ss_pred             CcCCCCC---CCEEEEeCCCCCCC
Confidence            9998764   45555554444433

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=8.1e-09  Score=81.50  Aligned_cols=97  Identities=31%  Similarity=0.474  Sum_probs=74.2

Q ss_pred             EEecCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC--CCEEEc-cccccceEEeccccCCCeEEE
Q psy12426        305 TVLDIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET--GRWVPM-GDVSGTYTRAENLIEGHDYNF  381 (616)
Q Consensus       305 ~v~~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~--~~~~~~-~~~~~~~~~i~~L~~~~~y~~  381 (616)
                      .+.+.|.+|.+ +.+..+..+.+.|+|.++.. ++..+..|.++++....  ..|... .......+.+.+|.+++.|.|
T Consensus        12 ~v~d~P~~P~~-~~v~~~~~~sv~l~W~~p~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~f   89 (127)
T d1ueya_          12 PVYDVPNPPFD-LELTDQLDKSVQLSWTPGDD-NNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSF   89 (127)
T ss_dssp             CCCCSCCCCEE-EEEECCSSSCEEEEEECCCC-CSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEECCCTTCEECC
T ss_pred             cccccCcCCCC-cEEEEecCCeEEEEEeCCcc-cccceEeeeeeeccccccceeEEEEeecCCceEEEECCCccCCEEEE
Confidence            45567888877 77888899999999997654 45688999999986533  233333 234566789999999999999


Q ss_pred             EEEEEecCcCCCCccccCCEEc
Q psy12426        382 RVKAVNKIGESLPLVCQSPITA  403 (616)
Q Consensus       382 ~v~a~n~~g~~~~~~~s~~~~~  403 (616)
                      +|+|.|..|.+.++..+..+..
T Consensus        90 rV~A~n~~G~s~~S~~s~~~~t  111 (127)
T d1ueya_          90 RVMAVNSIGKSLPSEASEQYLT  111 (127)
T ss_dssp             EEEEEESSCBCCCCSCCCCEEC
T ss_pred             EEEEEcCCcCcCCcCCcccEEc
Confidence            9999999999988765555543

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.2e-08  Score=76.89  Aligned_cols=80  Identities=23%  Similarity=0.349  Sum_probs=61.4

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecc------------cCcEEEEecCCceEEEecCCCCCCcEEEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIIS------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~  290 (616)
                      ...+.+.+|+++.|.|.+.+.|.+.+.|++++.....            ..+....    ..+|.|.++...|.|.|+|.
T Consensus         8 ~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~tL~I~~v~~~D~G~Y~C~   83 (102)
T d1f97a1           8 QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS----SSGITFSSVTRKDNGEYTCM   83 (102)
T ss_dssp             CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE----TTEEEESCCCGGGCEEEEEE
T ss_pred             CCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEec----CCEEEEeECCccCCEEEEEE
Confidence            4567899999999999999999999999985443211            0111111    23799999999999999999


Q ss_pred             EEcCCCCceeeEEEEE
Q psy12426        291 VKNSWGTDKGTAKVTV  306 (616)
Q Consensus       291 a~n~~g~~~~~~~l~v  306 (616)
                      |.|..|.......+.+
T Consensus        84 a~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          84 VSEEGGQNYGEVSIHL   99 (102)
T ss_dssp             EEETTSSSEEEEEEEE
T ss_pred             EEECCCCEEEEEEEEE
Confidence            9999998776665544

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=7.3e-09  Score=80.34  Aligned_cols=86  Identities=26%  Similarity=0.325  Sum_probs=67.5

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE---EEccccccceEEeccccCCCeEEEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW---VPMGDVSGTYTRAENLIEGHDYNFRVK  384 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~---~~~~~~~~~~~~i~~L~~~~~y~~~v~  384 (616)
                      ..|.+|.+ +.+...+.+++.|.|.+|...+ ..+.+|.|+|+......+   ..........+.+.+|.+++.|.|+|.
T Consensus        19 ~~P~~P~~-~~~~~~~~~sv~v~W~~P~~~~-g~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~   96 (117)
T d1wfoa1          19 DVPGPPMG-ILFPEVRTTSVRLIWQPPAAPN-GIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRIT   96 (117)
T ss_dssp             CCCCCCCC-CEEEEECSSEEEEECCCCSCCC-SCCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEESCCSSSEEEEEEE
T ss_pred             CCCcCCCC-cEEEEecCCEEEEEEECCCCCC-CceEEEeeeeeeccCCCceEeEEecCCceEEEEECCCCCCCEEEEEEE
Confidence            35677766 7778888999999999887654 479999999976544332   233335567899999999999999999


Q ss_pred             EEecCcCCCCc
Q psy12426        385 AVNKIGESLPL  395 (616)
Q Consensus       385 a~n~~g~~~~~  395 (616)
                      |.|..|.|+++
T Consensus        97 A~n~~G~g~~S  107 (117)
T d1wfoa1          97 AQTRKGWGEAA  107 (117)
T ss_dssp             EECSSCEEEEE
T ss_pred             EECCCcCCCCc
Confidence            99999988764

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.81  E-value=5.9e-09  Score=75.73  Aligned_cols=75  Identities=11%  Similarity=0.044  Sum_probs=57.9

Q ss_pred             eEEEcCCeEEEEEEEee-ecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCc-eeeEE
Q psy12426        226 IKVRAGSNFEFDINVIG-EPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTD-KGTAK  303 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~-~~~~~  303 (616)
                      ..+.+|+.+.|.|.+.+ .|.+.+.|++|+..+...     .   ....|.|.++...|+|.|+|.|.|..|.. +..+.
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~-----~---~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~   83 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----H---HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN   83 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----E---ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEccccccee-----c---cccccEECccceeccceEEEEEEeCCCCeEEeeEE
Confidence            45789999999999874 466689999999875421     1   12378999999999999999999987754 45566


Q ss_pred             EEEec
Q psy12426        304 VTVLD  308 (616)
Q Consensus       304 l~v~~  308 (616)
                      ++|.+
T Consensus        84 itV~E   88 (89)
T d1fnla2          84 ITITQ   88 (89)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            66654

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.9e-08  Score=75.07  Aligned_cols=96  Identities=19%  Similarity=0.144  Sum_probs=71.5

Q ss_pred             CCCCCCCCccceeec-CCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc--cccccceEEeccccCCCeEEEEEEE
Q psy12426        309 IPSPPEGPLKPSNIT-KSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM--GDVSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~-~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      +|.||.+ +.+.... ...+.+.|.+|.......+..|.|+++..+...+...  .....+.+.|.+|.+++.|.|+|+|
T Consensus         4 k~dPP~n-l~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~rVRa   82 (105)
T d1erna2           4 LLDAPVG-LVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRA   82 (105)
T ss_dssp             CCCCCEE-EEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECSCCSSCEEEEEEEE
T ss_pred             ccCCCCC-CEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeCCCCCcEEEEEEEE
Confidence            5778877 6665543 4469999998877777788999999988765544322  2244578999999999999999999


Q ss_pred             Eec--CcCCCCccccCCEEccC
Q psy12426        386 VNK--IGESLPLVCQSPITAKD  405 (616)
Q Consensus       386 ~n~--~g~~~~~~~s~~~~~~~  405 (616)
                      .+.  .+.|.++++|..+.+.+
T Consensus        83 r~~~~~~~G~WSeWS~~v~~~t  104 (105)
T d1erna2          83 RMAEPSFGGFWSAWSEPVSLLT  104 (105)
T ss_dssp             EECSSSCCBCCCCCCCCEEEEC
T ss_pred             EECCCCCCCCCCCCCCCEEeeC
Confidence            864  45677888888887764

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.1e-08  Score=75.66  Aligned_cols=86  Identities=23%  Similarity=0.321  Sum_probs=67.9

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCC-----CEEEc--cccccceEEeccccCCCeEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG-----RWVPM--GDVSGTYTRAENLIEGHDYN  380 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~-----~~~~~--~~~~~~~~~i~~L~~~~~y~  380 (616)
                      +.|.+|.+ +.+...+.+++.|+|.+|... +..+..|.|.++.....     .|...  .......+.+.+|.+++.|.
T Consensus         1 d~P~~P~~-~~~~~~~~~sv~v~W~~P~~~-~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~   78 (103)
T d1qg3a2           1 EVPSEPGR-LAFNVVSSTVTQLSWAEPAET-NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYR   78 (103)
T ss_dssp             CCCCCCCC-CEEEEEETTEEEEECCCCSCC-SSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECCCCTTCCEE
T ss_pred             CcCccCCC-cEEEEecCCEEEEEEEECccC-CCCceEEEEEeeccccccccccceEEEEecCCCceEEEEeecCCCCEEE
Confidence            35788887 888999999999999987665 45899999998754322     23222  23456789999999999999


Q ss_pred             EEEEEEecCcCCCCc
Q psy12426        381 FRVKAVNKIGESLPL  395 (616)
Q Consensus       381 ~~v~a~n~~g~~~~~  395 (616)
                      |+|+|.|..|.|.++
T Consensus        79 ~~V~A~n~~G~g~~s   93 (103)
T d1qg3a2          79 YTVKARNGAGWGPER   93 (103)
T ss_dssp             EEEEEEETTEECCCE
T ss_pred             EEEEEEcCCccCCCc
Confidence            999999999998765

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.9e-08  Score=75.05  Aligned_cols=92  Identities=20%  Similarity=0.181  Sum_probs=66.2

Q ss_pred             CCCCCCCCccce----eecCCeEEEEEeCCCCC---CCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEE
Q psy12426        309 IPSPPEGPLKPS----NITKSSCNLEWRAPRDD---GGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNF  381 (616)
Q Consensus       309 ~p~~p~~~~~~~----~~~~~~~~l~W~~~~~~---~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~  381 (616)
                      +|.+|.+ +.+.    ......+.|+|.+|...   .+..+..|.++++..+...|..........+.+.+|.+++.|.|
T Consensus         2 kP~pP~~-l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~   80 (104)
T d3d48r2           2 QPDPPLE-LAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLV   80 (104)
T ss_dssp             CCCCCEE-EEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCEEEEEETCSEEEECC--CCCEEEE
T ss_pred             CCcCCCC-CEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeeccccccccceeeeccccccEEEECCCCCCCEEEE
Confidence            4677766 4433    34567799999987542   34567899999998887778777666778899999999999999


Q ss_pred             EEEEEecCcC-CCCccccCCEEcc
Q psy12426        382 RVKAVNKIGE-SLPLVCQSPITAK  404 (616)
Q Consensus       382 ~v~a~n~~g~-~~~~~~s~~~~~~  404 (616)
                      +|+|.|..|. |++   |..+.+.
T Consensus        81 rVrA~n~~G~ws~w---S~~~~v~  101 (104)
T d3d48r2          81 QVRCKPDHGYWSAW---SPATFIQ  101 (104)
T ss_dssp             EEEEEESSSCCCCC---CCCEEEE
T ss_pred             EEEEEeCCCCCCCC---cCCEEEE
Confidence            9999999885 555   5555554

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.7e-08  Score=74.72  Aligned_cols=80  Identities=28%  Similarity=0.335  Sum_probs=64.6

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc--ccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG--DVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~--~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      +|.+ +.+..++.+++.|+|.+|.   +..+.+|.++++..+...|....  ......+.+.+|.+++.|.|+|.|.|..
T Consensus         8 ~P~~-l~v~~~t~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~L~p~t~Y~~~V~a~~~~   83 (95)
T d2fnba_           8 QLTD-LSFVDITDSSIGLRWTPLN---SSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLING   83 (95)
T ss_dssp             CCTT-CEEECCCSSCEEEECCCCC---CSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECCCCTTSEEEEEEEEEETT
T ss_pred             cCCC-eEEEEEcCCEEEEEEEecC---CceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEecccCCEEEEEEEEEEeCC
Confidence            4555 8888899999999999764   34689999999887666655443  3556789999999999999999999999


Q ss_pred             cCCCCc
Q psy12426        390 GESLPL  395 (616)
Q Consensus       390 g~~~~~  395 (616)
                      |.+.++
T Consensus        84 g~s~p~   89 (95)
T d2fnba_          84 GESAPT   89 (95)
T ss_dssp             EECCCC
T ss_pred             cEeCCE
Confidence            987653

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=7.2e-09  Score=78.69  Aligned_cols=86  Identities=20%  Similarity=0.272  Sum_probs=66.9

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC-E-EEccccccceEEeccccCCCeEEEEEEE
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR-W-VPMGDVSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~-~-~~~~~~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      +.|.+|.+ +.+...+.+++.|+|.+|...++ .+.+|.|+++..+... + ..........+.+.+|.+++.|.|+|.|
T Consensus         9 ~vP~~p~~-l~~~~~~~~sv~l~W~~P~~~ng-~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   86 (106)
T d1wfna1           9 DVPGPVGH-LSFSEILDTSLKVSWQEPGEKNG-ILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAA   86 (106)
T ss_dssp             CSCCCCSC-CEEESCCSSEEEEECCCCTTCCS-CCCEEEEEEEESSCGGGCCCEEECSSCCEEEEESCCTTCEEEEEEEE
T ss_pred             CCCcCCCC-cEEEEecCCEEEEEEECCCCCCC-cEEeEEEEEEECCCCcceEEEecCCCeeEEEEccCCCCCEEEEEEEE
Confidence            45677766 77778889999999998776544 7999999998754332 2 1222345678999999999999999999


Q ss_pred             EecCcCCCCc
Q psy12426        386 VNKIGESLPL  395 (616)
Q Consensus       386 ~n~~g~~~~~  395 (616)
                      .|..|.|..+
T Consensus        87 ~n~~G~g~~s   96 (106)
T d1wfna1          87 MTSKGQGQVS   96 (106)
T ss_dssp             ECSSCEEEEE
T ss_pred             ECCCCCcCCc
Confidence            9999998765

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.5e-09  Score=78.85  Aligned_cols=85  Identities=18%  Similarity=0.121  Sum_probs=63.1

Q ss_pred             CCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecC-C--ccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        412 RPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPA-N--ITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       412 ~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~-~--~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      +|.++++...+ ....|+|++|..+++  ...|.|+|+..++ .|........ .  ...+.+.+|.++..|.|||+|.|
T Consensus         6 ~P~nv~~~s~n-~~~~L~W~pp~~~g~--~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRVrA~n   82 (99)
T d1y6kr1           6 SPPSVWFEAEF-FHHILHWTPIPQQSE--STCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARVRAVD   82 (99)
T ss_dssp             CCSCEEEEEET-TEEEEEECCCTTCCT--TCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEEEEEE
T ss_pred             CCCcceEEEEC-CEEEEEEcCCCCcCC--CCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEEEEEc
Confidence            46789986655 467799998766554  3569999998766 7887633211 1  22345789999999999999999


Q ss_pred             CCCCCCCCCCCC
Q psy12426        488 KGGPGEPSKASA  499 (616)
Q Consensus       488 ~~G~g~~s~~~~  499 (616)
                      ..|.|+++....
T Consensus        83 ~~g~S~Ws~t~~   94 (99)
T d1y6kr1          83 GSRHSQWTVTNT   94 (99)
T ss_dssp             TTEECCCEECSS
T ss_pred             CCCcCCCcccCc
Confidence            999999886543

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2e-09  Score=80.46  Aligned_cols=85  Identities=19%  Similarity=0.066  Sum_probs=66.8

Q ss_pred             CcceEEEcCCeEEEEEEEe-eecCceeEEEECCeeecc--cCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCce
Q psy12426        223 LSDIKVRAGSNFEFDINVI-GEPIPTKEWLCNDITIIS--KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDK  299 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~-~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~  299 (616)
                      +..+...+|+.+.|.|.+. +.|.+.+.|++++..+..  .....+...+  ..|.|.+++..|+|.|+|.|.|..|...
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~~   86 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLR   86 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEET--TEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccC--CEEEeccceecCCEEEEEEEECCCCeEE
Confidence            3457788999999999885 678899999998865432  2222222222  2899999999999999999999999998


Q ss_pred             eeEEEEEecC
Q psy12426        300 GTAKVTVLDI  309 (616)
Q Consensus       300 ~~~~l~v~~~  309 (616)
                      .++.|.|...
T Consensus        87 ~~~~L~V~~~   96 (101)
T d1iray1          87 IKISAKFVEN   96 (101)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEEeC
Confidence            8999988753

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.74  E-value=3.7e-08  Score=74.41  Aligned_cols=84  Identities=17%  Similarity=0.177  Sum_probs=65.1

Q ss_pred             CCCCCCccceeecCCeEEEEEeCCC-CCCCCceEEEEEEEEeCC-CCCEEEcc--ccccceEEeccccCCCeEEEEEEEE
Q psy12426        311 SPPEGPLKPSNITKSSCNLEWRAPR-DDGGTDILHYVVEKMDME-TGRWVPMG--DVSGTYTRAENLIEGHDYNFRVKAV  386 (616)
Q Consensus       311 ~~p~~~~~~~~~~~~~~~l~W~~~~-~~~~~~i~~y~v~~~~~~-~~~~~~~~--~~~~~~~~i~~L~~~~~y~~~v~a~  386 (616)
                      .+|.+ +.+...+..++.|+|.++. ...+..+.+|.|.|+... ...|....  ......+.|.+|.+++.|.|+|.|.
T Consensus         6 ~~P~~-v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~   84 (105)
T d1cfba2           6 KNPDN-VVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAI   84 (105)
T ss_dssp             CCCSC-CEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECSCCSSCEEEEEEEEE
T ss_pred             CCCcC-eEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECCCCCCCEEEEEEEEE
Confidence            35665 7777788899999998643 334558999999998654 33444332  3556789999999999999999999


Q ss_pred             ecCcCCCCc
Q psy12426        387 NKIGESLPL  395 (616)
Q Consensus       387 n~~g~~~~~  395 (616)
                      |..|.|.++
T Consensus        85 N~~G~gp~S   93 (105)
T d1cfba2          85 NDRGESNVA   93 (105)
T ss_dssp             ETTEECSSC
T ss_pred             eCCcCCCCC
Confidence            999999875

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.5e-08  Score=74.56  Aligned_cols=87  Identities=17%  Similarity=0.202  Sum_probs=65.1

Q ss_pred             CCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE-EEccccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       311 ~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      .+|.+ +.+..++.+++.|+|.+|.    ..+.+|.|+++......+ ..........+.+.+|.+++.|.|+|.|.|..
T Consensus         3 ~aP~n-~~~~~~s~~si~l~W~~p~----~~~~~Y~i~y~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~   77 (92)
T d1qg3a1           3 GAPQN-PNAKAAGSRKIHFNWLPPS----GKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQ   77 (92)
T ss_dssp             CCCEE-EEEEECSTTCEEEEEECCS----SCCCEEEEEEEETTSCGGGCEEEEESSSEEEECSCCTTCEEEEEEEEECSS
T ss_pred             CcCCC-CEEEEccCCEEEEEEEecC----CCccceEEeeeeccccccEEEEecCCccEEEECCCCCCcEEEEEEEEEeCC
Confidence            35565 6778889999999999763    257899999987544332 22223456789999999999999999999999


Q ss_pred             cCCCCccccCCEEccC
Q psy12426        390 GESLPLVCQSPITAKD  405 (616)
Q Consensus       390 g~~~~~~~s~~~~~~~  405 (616)
                      |.|.++   ..+.+.|
T Consensus        78 G~g~~S---~~~~~~T   90 (92)
T d1qg3a1          78 GEGPYS---SLVSCRT   90 (92)
T ss_dssp             CBCCCC---CCEEEEC
T ss_pred             cCcCCC---CCEEEEc
Confidence            998774   4555543

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.1e-08  Score=76.94  Aligned_cols=85  Identities=24%  Similarity=0.337  Sum_probs=68.1

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEe
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVN  387 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n  387 (616)
                      ..|.+|.+ +.+. ...+.+.|.|.+|... +..+.+|.|+++..+...+..........+.+.+|.+++.|.|+|+|.|
T Consensus        19 ~vP~~P~~-~~~~-~~~~si~v~W~~p~~~-~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n   95 (113)
T d1x5ia1          19 RVPEVPSS-LHVR-PLVTSIVVSWTPPENQ-NIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAFN   95 (113)
T ss_dssp             SCCCSCSE-EEEE-EETTEEEEEEECCSCT-TBCCCEEEEEECSSCGGGEEEECCTTCCEEEECSCCSSCEECCEEEEEC
T ss_pred             CCCCCCEe-eeee-eCCCEEEEEEEccccC-CccEEEEEEEeeeccccceeeeeeCCccEEEEeccccCcEEEEEEEEEC
Confidence            35666665 5554 3567999999987665 4589999999988766666666666778899999999999999999999


Q ss_pred             cCcCCCCc
Q psy12426        388 KIGESLPL  395 (616)
Q Consensus       388 ~~g~~~~~  395 (616)
                      ..|.|.+.
T Consensus        96 ~~G~g~~~  103 (113)
T d1x5ia1          96 NVGEGIPL  103 (113)
T ss_dssp             SSCBCCCC
T ss_pred             CCcCCCCe
Confidence            99998764

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5.4e-08  Score=75.16  Aligned_cols=75  Identities=17%  Similarity=0.171  Sum_probs=58.1

Q ss_pred             ceeecCCeEEEEEeCCC-CCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcCCCCc
Q psy12426        319 PSNITKSSCNLEWRAPR-DDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPL  395 (616)
Q Consensus       319 ~~~~~~~~~~l~W~~~~-~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~  395 (616)
                      +.......+.|.|+++. ...+..+.+|.|+|+..+...+.....  ...+.+.+|.+++.|.|+|+|.|..|.|..+
T Consensus        26 ~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~~~~~~~--~~~~~~~~L~p~t~Y~~~V~A~n~~G~G~~S  101 (117)
T d1wj3a_          26 VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNT--NKTSAELVLPIKEDYIIEVKATTDGGDGTSS  101 (117)
T ss_dssp             BCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSCEEEEE--SSSEEEEECCCSSCEEEEEEEEESSCCCCBC
T ss_pred             EEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCceeeeec--eeeEEEeeccCCcEEEEEEEEEcCCccCCCC
Confidence            45567889999999743 333568999999998876665554432  3456777899999999999999999998874

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=8.7e-09  Score=76.83  Aligned_cols=80  Identities=8%  Similarity=-0.077  Sum_probs=60.4

Q ss_pred             CCCceEecCCCeEEEEEEE-eeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426          8 HLGDIKLSAGTTLKFDANI-IGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~-~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      .|..+.+.+|+.+.|.|.+ .+.|.|.|.|+|+|..+......           ..++                 .....
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~-----------~~~~-----------------~~~~~   59 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQ-----------ASRI-----------------HQHKE   59 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCT-----------TSSE-----------------EEETT
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCccccccccc-----------ceEE-----------------eccCC
Confidence            4667889999999999986 47899999999999766531110           0000                 01145


Q ss_pred             ceEecCcccCCeEEEEEEEEcCCCCCCCC
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVNKGGPGEPS  115 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n~~g~~~~~  115 (616)
                      .|.|.++...|.|.|.|.|.|..|....+
T Consensus        60 ~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1          60 KLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             EEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            89999999999999999999999876544

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=98.71  E-value=3.5e-08  Score=71.59  Aligned_cols=77  Identities=30%  Similarity=0.412  Sum_probs=59.2

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEec
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      .|.+|.+ +.+..++.+++.|+|+++.++  ..+.+|.+.+...   ..   .......+.+.+|.+++.|.|+|+|.|.
T Consensus         3 AP~~P~~-l~~~~~~~~sv~lsW~~p~~~--~~i~~Y~i~~~~~---~~---~~~~~t~~~~~~L~p~t~Y~~~V~A~n~   73 (88)
T d1k85a_           3 APTAPTN-LASTAQTTSSITLSWTASTDN--VGVTGYDVYNGTA---LA---TTVTGTTATISGLAADTSYTFTVKAKDA   73 (88)
T ss_dssp             SCCCCEE-EEEEEECSSCEEEEEECCSCC--SSEEEEEEEESSS---EE---EEESSSEEEECCCCSSCEEEEEEEEEET
T ss_pred             CcCCCCC-cEEEEecCCEEEEEEeCCCCC--CCEEEEEEEccce---EE---EecCCCEEEECCCCCCCEEEEEEEEEEC
Confidence            4677776 778888899999999987653  3588999876321   11   2234578999999999999999999999


Q ss_pred             Cc-CCCC
Q psy12426        389 IG-ESLP  394 (616)
Q Consensus       389 ~g-~~~~  394 (616)
                      .| .+.+
T Consensus        74 ~G~~s~~   80 (88)
T d1k85a_          74 AGNVSAA   80 (88)
T ss_dssp             TTEECCC
T ss_pred             CCCcCCC
Confidence            98 4554

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.2e-08  Score=80.06  Aligned_cols=106  Identities=20%  Similarity=0.229  Sum_probs=75.4

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCC--------CceEEEEEEEEeCCC-CCEEEccccccceEEeccccCCCeE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGG--------TDILHYVVEKMDMET-GRWVPMGDVSGTYTRAENLIEGHDY  379 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~--------~~i~~y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~~y  379 (616)
                      .|..+..| .+..+..+++.|+|.+|...++        ..+..|.+.+++... ..|..+.......+.|.+|.+++.|
T Consensus        17 ~~~~~~~P-~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~P~t~Y   95 (137)
T d1wk0a_          17 LLSNIVKP-VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDY   95 (137)
T ss_dssp             HTTCCCCC-EEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESCSEEEECSCCTTCEE
T ss_pred             CCCCCCCC-EEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEEEecCccEEEECCCCCCcEE
Confidence            34455553 5677889999999998765433        246678888876433 3455555556778999999999999


Q ss_pred             EEEEEEEecCcCCCCccccCCEEccCCCCCCCCCCCCEE
Q psy12426        380 NFRVKAVNKIGESLPLVCQSPITAKDPFGRPDRPGQPTV  418 (616)
Q Consensus       380 ~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p~~~~~  418 (616)
                      .|+|+|.|..|.+.++.   .+.+.+...+|++|....+
T Consensus        96 ~f~V~A~n~~G~g~~S~---~~~~~T~~~~P~~p~~p~i  131 (137)
T d1wk0a_          96 HAKVQAEYNSIKGTPSE---AEIFTTLSCEPDIPNPPRI  131 (137)
T ss_dssp             CEEEEEEETTEECCCCC---CCCEECCCSSSCCCSCSCC
T ss_pred             EEEEEEEcCCcccCCCC---CEEEECCCCCCCCCCCCEE
Confidence            99999999999988754   4445555666666554443

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=5.4e-08  Score=76.41  Aligned_cols=99  Identities=14%  Similarity=0.113  Sum_probs=70.7

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCC-CCCceEEEEEEEEeCCCCC---------EEEccccccceEEeccccCCCe
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDD-GGTDILHYVVEKMDMETGR---------WVPMGDVSGTYTRAENLIEGHD  378 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~-~~~~i~~y~v~~~~~~~~~---------~~~~~~~~~~~~~i~~L~~~~~  378 (616)
                      ++.+|.+ +.+..+..+.+.|+|+++... ....+..|.+.+.......         +..........+.|.+|.+++.
T Consensus        14 P~~~P~~-v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~   92 (125)
T d1uena_          14 PMVAPGN-VRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSH   92 (125)
T ss_dssp             CCCCCSS-CEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEESCCSSCE
T ss_pred             CCCCCcc-cEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECCCCCCCE
Confidence            3346666 788889999999999976532 2457888888876532211         1222224456899999999999


Q ss_pred             EEEEEEEEecCcCCCCccccCCEEccCCCCCCC
Q psy12426        379 YNFRVKAVNKIGESLPLVCQSPITAKDPFGRPD  411 (616)
Q Consensus       379 y~~~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~  411 (616)
                      |.|+|+|.|..|.+.+   +..+.+.+....|+
T Consensus        93 Y~~~V~A~n~~G~g~~---S~~~~~~T~~~~pp  122 (125)
T d1uena_          93 YTLNVRVVNGKGEGPA---SPDRVFNTPEGSGP  122 (125)
T ss_dssp             EEEEEEEEESSCEEEE---CCCEEEECCCCCSS
T ss_pred             EEEEEEEEeCCcccCC---CCCEEEECCCCCcC
Confidence            9999999999998877   45566666555553

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=6.4e-08  Score=73.81  Aligned_cols=91  Identities=22%  Similarity=0.313  Sum_probs=67.1

Q ss_pred             CCCCCCccceeecCCeEEEEEeCCCCCC-CCceEEEEEEEEeCCCCCEEE---c---cccccceEEeccccCCCeEEEEE
Q psy12426        311 SPPEGPLKPSNITKSSCNLEWRAPRDDG-GTDILHYVVEKMDMETGRWVP---M---GDVSGTYTRAENLIEGHDYNFRV  383 (616)
Q Consensus       311 ~~p~~~~~~~~~~~~~~~l~W~~~~~~~-~~~i~~y~v~~~~~~~~~~~~---~---~~~~~~~~~i~~L~~~~~y~~~v  383 (616)
                      .+|.+ +.+.....+.+.|.|.++.... +..+.+|.+.++......+..   .   .......+.|.+|.+++.|.|+|
T Consensus        10 ~pP~~-v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V   88 (109)
T d1va9a1          10 GPPMD-VTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVV   88 (109)
T ss_dssp             SCCEE-EEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEESCCSSCCEEEEE
T ss_pred             CCCcC-cEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECCCCcceEEEEEE
Confidence            35555 6777888999999999765433 568899999998654433221   1   12345689999999999999999


Q ss_pred             EEEecCcCCCCccccCCEEccC
Q psy12426        384 KAVNKIGESLPLVCQSPITAKD  405 (616)
Q Consensus       384 ~a~n~~g~~~~~~~s~~~~~~~  405 (616)
                      +|.|..|.|.+   +..+.+.+
T Consensus        89 ~a~n~~G~g~~---S~~v~~~T  107 (109)
T d1va9a1          89 QAFNRAGTGPS---SSEINATT  107 (109)
T ss_dssp             EEEETTEECCC---CCCEECCC
T ss_pred             EEEcCCcCCCC---CCCEEEEc
Confidence            99999998877   44555543

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=5e-08  Score=70.44  Aligned_cols=79  Identities=19%  Similarity=0.156  Sum_probs=64.7

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGE  391 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~  391 (616)
                      +|.+ +.+..+..+++.|+|.+|.    ..+.+|.|+++..++..+..........+.+.+|.+++.|.|+|.|.|..|.
T Consensus         3 ~P~n-l~v~~~~~~s~~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~   77 (86)
T d1tdqa3           3 SPRD-LMVTASSETSISLIWTKAS----GPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQ   77 (86)
T ss_dssp             CCEE-EEEEEECSSCEEEEEECCC----SCCSEEEEEEECSSSCCEEEEEESSCSEEEECCCCTTCCEEEEEEEEETTEE
T ss_pred             cCCC-CEEEEecCCEEEEEEeCCC----CCccceEEEEecccccceEEEeCCCccEEEECCCccccEEEEEEEEEcCCCE
Confidence            4555 7788899999999999763    3588999999887666655555566788999999999999999999999988


Q ss_pred             CCCc
Q psy12426        392 SLPL  395 (616)
Q Consensus       392 ~~~~  395 (616)
                      +.++
T Consensus        78 s~p~   81 (86)
T d1tdqa3          78 SLES   81 (86)
T ss_dssp             CCCE
T ss_pred             ECCE
Confidence            7653

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.65  E-value=6e-08  Score=70.38  Aligned_cols=79  Identities=32%  Similarity=0.507  Sum_probs=64.7

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc-ccccceEEeccccCCCeEEEEEEEEecCc
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG-DVSGTYTRAENLIEGHDYNFRVKAVNKIG  390 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~n~~g  390 (616)
                      .|.+ +.+..++.+++.|+|.++.    ..+.+|.|+++......+.... ......+.+.+|.+++.|.|+|.|.|..|
T Consensus         3 ~P~~-l~v~~v~~~s~~l~W~~~~----~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g   77 (88)
T d1qr4a2           3 SPKG-ISFSDITENSATVSWTPPR----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFE   77 (88)
T ss_dssp             CCSC-EEEESCCSSCEEEEECCCS----SCCSEEEEEEEETTCCCCEEEEEETTCCEEEECSCCSSCEEEEEEEEEETTE
T ss_pred             CCcc-eEEEEecCCEEEEEEEccc----EeeceEEEEEEeccCCceEEEEecCCccEEEECCCCCCCEEEEEEEEEeCCC
Confidence            4666 8888899999999999753    3688999999987766655543 35567899999999999999999999999


Q ss_pred             CCCCc
Q psy12426        391 ESLPL  395 (616)
Q Consensus       391 ~~~~~  395 (616)
                      .+.+.
T Consensus        78 ~s~p~   82 (88)
T d1qr4a2          78 ESEPI   82 (88)
T ss_dssp             ECCCE
T ss_pred             CcCCE
Confidence            87653

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.7e-08  Score=71.28  Aligned_cols=78  Identities=22%  Similarity=0.285  Sum_probs=63.1

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc--cccceEEeccccCCCeEEEEEEEEecC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD--VSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      +|.+ +.+..++.+++.|+|++|.    ..+.+|.|+++..+...+.....  .....+.+.+|.+++.|.|+|.|.|..
T Consensus         3 aP~n-l~v~~~~~~s~~l~W~~p~----~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~a~n~~   77 (89)
T d1fnha3           3 APSN-LRFLATTPNSLLVSWQPPR----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNN   77 (89)
T ss_dssp             CCEE-EEEEEEETTEEEEEEECCS----SCCSEEEEEEECTTSCCEECTTCCCTTCCEEEEESCCTTCEEEEEEEEESSS
T ss_pred             cCcC-CEEEEecCCEEEEEEeCCC----cCCceEEEEEeeccCCccEEEEEcCCCccEEEEEeeeCCCEEEEEEEEEcCC
Confidence            4555 7888899999999999763    35889999998876666655433  446689999999999999999999999


Q ss_pred             cCCCC
Q psy12426        390 GESLP  394 (616)
Q Consensus       390 g~~~~  394 (616)
                      |.+.+
T Consensus        78 g~S~p   82 (89)
T d1fnha3          78 QKSEP   82 (89)
T ss_dssp             CEEEE
T ss_pred             CEeCC
Confidence            87654

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.5e-08  Score=74.62  Aligned_cols=94  Identities=16%  Similarity=0.251  Sum_probs=72.3

Q ss_pred             CCCCCCCCccceee--cCCeEEEEEeCCCCC--CCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEE
Q psy12426        309 IPSPPEGPLKPSNI--TKSSCNLEWRAPRDD--GGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVK  384 (616)
Q Consensus       309 ~p~~p~~~~~~~~~--~~~~~~l~W~~~~~~--~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~  384 (616)
                      .|.+|.+ +.+..+  ....+.|+|..|...  .......|.++++..+...|..........+.|.+|.+++.|.|+|+
T Consensus         7 kP~PP~~-l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~rVr   85 (109)
T d1uc6a_           7 KPDPPEN-VVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGTAHTITDAYAGKEYIIQVA   85 (109)
T ss_dssp             CCCCCEE-EEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCCCCEEESSCSEEEETTCCSSSCEEEEEE
T ss_pred             ECCCCCC-CEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCceEEeccCCceeEEeCCCCCCCEEEEEEE
Confidence            5777776 565544  457899999987543  24456789999988877778766666778899999999999999999


Q ss_pred             EEecCcCCCCccccCCEEcc
Q psy12426        385 AVNKIGESLPLVCQSPITAK  404 (616)
Q Consensus       385 a~n~~g~~~~~~~s~~~~~~  404 (616)
                      |.|. +.+.++.++..+...
T Consensus        86 A~~~-~~g~wS~WS~~~~~t  104 (109)
T d1uc6a_          86 AKDN-EIGTWSDWSVAAHAT  104 (109)
T ss_dssp             CCBS-SSCCCCCCCEEEEEC
T ss_pred             EEEC-CCCCcCCCCCCEEeE
Confidence            9874 567777777776654

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=9.4e-08  Score=69.89  Aligned_cols=75  Identities=24%  Similarity=0.233  Sum_probs=60.8

Q ss_pred             ccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc--cccccceEEeccccCCCeEEEEEEEEecCcCCCC
Q psy12426        317 LKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM--GDVSGTYTRAENLIEGHDYNFRVKAVNKIGESLP  394 (616)
Q Consensus       317 ~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~  394 (616)
                      |.+..++.+++.|.|.+|.    ..+.+|.|++...+...+...  .......+.|.+|.|++.|.|+|.|.|..|.+..
T Consensus         3 l~v~~~t~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~L~p~t~Y~~~V~a~~~~g~s~~   78 (91)
T d1fnaa_           3 LEVVAATPTSLLISWDAPA----VTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPA   78 (91)
T ss_dssp             CEEEEECSSCEEEECCCCS----SCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCEEEEEEEEECTTCCSSC
T ss_pred             CEEEEeCCCEEEEEEEccc----eEecEEEEEEEcCCCCceeEEEEeCCCccEEEeCCCCCCCEEEEEEEEEeCCccCCC
Confidence            7788899999999999763    257899999987655444322  2356678999999999999999999999998876


Q ss_pred             c
Q psy12426        395 L  395 (616)
Q Consensus       395 ~  395 (616)
                      +
T Consensus        79 ~   79 (91)
T d1fnaa_          79 S   79 (91)
T ss_dssp             S
T ss_pred             c
Confidence            5

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.63  E-value=6.7e-08  Score=70.02  Aligned_cols=79  Identities=22%  Similarity=0.252  Sum_probs=63.0

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGE  391 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~  391 (616)
                      +|.+ +.+..++.+++.|+|.+|.    ..+.+|.|.++..+...+..........+.+.+|.|++.|.|+|.|.+..|.
T Consensus         2 aP~~-l~v~~~t~~sv~v~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~v~V~a~~~~~~   76 (87)
T d1qr4a1           2 NPKD-LEVSDPTETTLSLRWRRPV----AKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHK   76 (87)
T ss_dssp             CCEE-EEEESCCSSEEEEEEECCS----SCCSEEEEEEECTTCCEEEEEECTTCSEEEEESCCSSCEEEEEEEEESSSCB
T ss_pred             cCcC-cEEEEecCCEEEEEEECCC----CCcceeEEEeecCCcceeEEeCCCCcCEEEECCCCcCCEEEEEEEEEcCCCC
Confidence            4555 7788888999999999763    2578999999876655444444456788999999999999999999999998


Q ss_pred             CCCc
Q psy12426        392 SLPL  395 (616)
Q Consensus       392 ~~~~  395 (616)
                      +.+.
T Consensus        77 s~~~   80 (87)
T d1qr4a1          77 SKPT   80 (87)
T ss_dssp             CCCE
T ss_pred             ccCE
Confidence            7653

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.4e-08  Score=76.56  Aligned_cols=84  Identities=12%  Similarity=0.037  Sum_probs=57.9

Q ss_pred             CcceEEEcCCeEEEEEEEee-e--cCceeEEEECCeeecccCcEEEEec--CCceEEEecCCCCCCcEEEEEEEEcCCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIG-E--PIPTKEWLCNDITIISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVKNSWGT  297 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~-~--p~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~n~~g~  297 (616)
                      +....+.+|+.++|.|.+.| .  |.+.+.|++++..+...........  .....|.|.....++.+.|+|.|.|..|.
T Consensus         9 ~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~   88 (106)
T d1zxqa1           9 LQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMS   88 (106)
T ss_dssp             EESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGG
T ss_pred             CCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCC
Confidence            34456889999999999987 3  4558999999998764322221111  12235666766667788999999998886


Q ss_pred             ceeeEEEEE
Q psy12426        298 DKGTAKVTV  306 (616)
Q Consensus       298 ~~~~~~l~v  306 (616)
                      ......+.+
T Consensus        89 ~~~~~~~~~   97 (106)
T d1zxqa1          89 RGGNIFHKH   97 (106)
T ss_dssp             GTCCEEEEE
T ss_pred             CCCeeEecc
Confidence            655554444

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=6.6e-08  Score=71.13  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=63.3

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEEEEecCcC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVKAVNKIGE  391 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~  391 (616)
                      +|.+ +.+..+...++.|+|.+|.    ..+.+|.|.++..+...+.........++.+.+|.|++.|.|+|.|.|..|.
T Consensus         4 ~P~~-l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~   78 (93)
T d2cuma1           4 APRD-LEAKEVTPRTALLTWTEPP----VRPAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSL   78 (93)
T ss_dssp             CCEE-EEEESCCSSCEEEEEECCS----SCCSEEEEEEECTTSCEEEEEECSSCSEEEECSCCTTCEEEEEEEEEBTTBC
T ss_pred             cCCC-CEEEEeCCCEEEEEEEccc----cccccEEEEEEccccccEEEEECCCccEEEEeCccCCCEEEEEEEEEeCCCC
Confidence            4555 7777888999999999763    3588999999876655444444566778999999999999999999999998


Q ss_pred             CCCc
Q psy12426        392 SLPL  395 (616)
Q Consensus       392 ~~~~  395 (616)
                      +.++
T Consensus        79 s~~~   82 (93)
T d2cuma1          79 LPPV   82 (93)
T ss_dssp             CCCE
T ss_pred             CCCE
Confidence            7653

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=4e-08  Score=74.59  Aligned_cols=84  Identities=26%  Similarity=0.258  Sum_probs=63.6

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc---ccccceEEeccccCCCeEEEEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG---DVSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~---~~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      .+.+|.+ +.+ ....+.+.|+|.+|... +..+.+|.++++.... .|....   ....+.+.+.+|.+++.|.|+|+|
T Consensus         7 ~~sPP~~-~~~-~~t~~si~l~W~pp~~~-~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rV~A   82 (108)
T d1v5ja_           7 GLSPPRG-LVA-VRTPRGVLLHWDPPELV-PKRLDGYVLEGRQGSQ-GWEVLDPAVAGTETELLVPGLIKDVLYEFRLVA   82 (108)
T ss_dssp             CCCCCEE-EEE-EECSSSEEEEEECCSCC-SSCCCBEEEEEEETTC-CCEEEEEEECSSCCEEECCCCCTTSCEECCBEE
T ss_pred             CCCcCCC-eEE-EEcCCEEEEEEEecccC-CCceeEEEEEeeeeee-eeeeccccccceeeeEEEEeccCCcEEEEEEEE
Confidence            4556665 544 45678899999987654 4579999999987544 343332   245678999999999999999999


Q ss_pred             EecCcCCCCcc
Q psy12426        386 VNKIGESLPLV  396 (616)
Q Consensus       386 ~n~~g~~~~~~  396 (616)
                      .|..|.+.++.
T Consensus        83 ~n~~g~s~~S~   93 (108)
T d1v5ja_          83 FAGSFVSDPSN   93 (108)
T ss_dssp             EETTEEEEECS
T ss_pred             EeCCCEeCCcC
Confidence            99999988753

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.62  E-value=7.9e-08  Score=68.78  Aligned_cols=66  Identities=17%  Similarity=0.115  Sum_probs=52.3

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCce-eEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCC
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPT-KEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWG  296 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g  296 (616)
                      ..+....+.+|++++|.|.+.+.+.+. +.|++++..+...          ...|.|.++...|+|.|+|.|.|..+
T Consensus        10 ~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1          10 LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             EESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             ECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------ceeeEecCCcccCCEEEEEEccCCCc
Confidence            335567899999999999999998885 5567787665322          23899999999999999999977543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.4e-09  Score=82.89  Aligned_cols=94  Identities=17%  Similarity=0.240  Sum_probs=70.6

Q ss_pred             CCCceeccCCcceEEEcCCeEEEEEEEeee-cCceeEEEECCeeeccc--CcEEEEec----CCceEEEecCCCCCC-cE
Q psy12426        214 VSPYINRDQLSDIKVRAGSNFEFDINVIGE-PIPTKEWLCNDITIISK--DRFKIVND----DKSTKLKVFDSKRGD-SG  285 (616)
Q Consensus       214 ~~P~~~~~~~~~~~v~~g~~~~l~c~~~~~-p~~~~~W~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~l~~~~-~g  285 (616)
                      .||.+.  .+....+..|+.+.|.|.+.+. |.+.+.|++++..+...  .++.+...    +..+.|.|.++...| .|
T Consensus         6 ~Pp~i~--~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G   83 (115)
T d2crya1           6 GPPIIS--STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQT   83 (115)
T ss_dssp             SSCCEE--EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHS
T ss_pred             cCCEEe--cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCe
Confidence            456553  2345667899999999999996 45589999999887543  33433321    223579999999998 69


Q ss_pred             EEEEEEEcCCCCceeeEEEEEecC
Q psy12426        286 IYTLAVKNSWGTDKGTAKVTVLDI  309 (616)
Q Consensus       286 ~y~c~a~n~~g~~~~~~~l~v~~~  309 (616)
                      .|+|.|.|..|.....+.|.|...
T Consensus        84 ~Y~C~A~N~~G~~~~~~~L~V~~~  107 (115)
T d2crya1          84 IYNCTAWNSFGSDTEIIRLKEQGS  107 (115)
T ss_dssp             CEEEEEECSSCEEEEEECCCCSCS
T ss_pred             EEEEEEEECCCeEEEEEEEEEECC
Confidence            999999999999988888877643

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.3e-08  Score=72.92  Aligned_cols=86  Identities=16%  Similarity=0.116  Sum_probs=64.4

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCCCC---CCCceEEEEEEEEeCCCCCE-EEccccccceEEeccccCCCeEEEEEEE
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPRDD---GGTDILHYVVEKMDMETGRW-VPMGDVSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~---~~~~i~~y~v~~~~~~~~~~-~~~~~~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      +.+|.+ +.+..++..++.|+|.+|...   ....+..|.+.++..+...+ ..........+.|.+|.+++.|.|+|.|
T Consensus         2 ~~pP~~-v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a   80 (100)
T d1x5ja1           2 MMPPVG-VQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMV   80 (100)
T ss_dssp             CCCCEE-EEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEECCEEEE
T ss_pred             CCCCcC-eEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCCCccEEEECCCCCCCEEEEEEEE
Confidence            345665 788899999999999976432   23456788898876544332 2222345568999999999999999999


Q ss_pred             EecCcCCCCcc
Q psy12426        386 VNKIGESLPLV  396 (616)
Q Consensus       386 ~n~~g~~~~~~  396 (616)
                      .|..|.|.++.
T Consensus        81 ~n~~g~s~~S~   91 (100)
T d1x5ja1          81 TKGRRSSTWSM   91 (100)
T ss_dssp             ECSSCBCCCCC
T ss_pred             EeCCcCcCCCC
Confidence            99999988754

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=6.5e-08  Score=72.52  Aligned_cols=91  Identities=13%  Similarity=0.149  Sum_probs=67.2

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCC-CCCCCceEEEEEEEEeCCCCCE---EE-ccccccceEEeccccCCCeEEEEEE
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPR-DDGGTDILHYVVEKMDMETGRW---VP-MGDVSGTYTRAENLIEGHDYNFRVK  384 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~-~~~~~~i~~y~v~~~~~~~~~~---~~-~~~~~~~~~~i~~L~~~~~y~~~v~  384 (616)
                      +.+|.+ +.+..++.+.+.|+|..+. ...+..+.+|.|.++..+...+   .. ........+.|.+|.+++.|.|+|.
T Consensus         2 ~~~P~~-~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~   80 (101)
T d1x4ya1           2 VAGPYI-TFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQ   80 (101)
T ss_dssp             CSCCEE-EEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEEEEEEE
T ss_pred             CCCCcc-cEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcCCCCCCEEEEEEE
Confidence            345555 6777889999999998643 4446789999999986544332   11 1224456789999999999999999


Q ss_pred             EEecCcCCCCccccCCEEcc
Q psy12426        385 AVNKIGESLPLVCQSPITAK  404 (616)
Q Consensus       385 a~n~~g~~~~~~~s~~~~~~  404 (616)
                      |.|..|.|.++   ..+.+.
T Consensus        81 a~n~~G~s~~S---~~~~~~   97 (101)
T d1x4ya1          81 CFNEGGESEFS---NVMICE   97 (101)
T ss_dssp             EECTTCCCCCC---CCEEEE
T ss_pred             EEcCCCCCCCC---CcEEEE
Confidence            99999998874   444444

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.4e-08  Score=74.72  Aligned_cols=82  Identities=10%  Similarity=0.044  Sum_probs=61.5

Q ss_pred             cceEEEcCCeEEEEEEEee-ecCc--eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCcee
Q psy12426        224 SDIKVRAGSNFEFDINVIG-EPIP--TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKG  300 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~-~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~  300 (616)
                      ....+.+|+.++|.|.+.| .|.+  .+.|++++..+.....   ........|.|.....+|.|.|+|.|.|..|....
T Consensus        12 ~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~   88 (103)
T d1iama1          12 LPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGL   88 (103)
T ss_dssp             CCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTS
T ss_pred             CCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEEEEeCCCCccC
Confidence            4456889999999999997 4544  6889999988753211   11223457899999999999999999999998776


Q ss_pred             eEEEEEec
Q psy12426        301 TAKVTVLD  308 (616)
Q Consensus       301 ~~~l~v~~  308 (616)
                      ...+.+..
T Consensus        89 ~~~~~~s~   96 (103)
T d1iama1          89 ELFENTSA   96 (103)
T ss_dssp             CEEEEECC
T ss_pred             eEeeeEcC
Confidence            66666543

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.9e-07  Score=71.37  Aligned_cols=89  Identities=16%  Similarity=0.265  Sum_probs=63.9

Q ss_pred             CCCCCcccee--ecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCC---CEEEc-cccccceEEeccccCCCeEEEEEEE
Q psy12426        312 PPEGPLKPSN--ITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETG---RWVPM-GDVSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       312 ~p~~~~~~~~--~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~---~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      +|.+ +.+..  .....+.|+|.+|... +..+..|.+.++.....   .|... .......+.|.+|.+++.|.|+|+|
T Consensus        14 pP~~-~~v~~~~~~~~sv~v~W~~P~~~-~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A   91 (111)
T d1x5ka1          14 PPKD-VTVVSKEGKPKTIIVNWQPPSEA-NGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQA   91 (111)
T ss_dssp             CCEE-EEEEECSSCTTCEEEEEECCSCC-SSCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECSCCSSSEEEEEEEE
T ss_pred             CCCC-cEEEEecCCCCEEEEEEEccccC-CCceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECCCCCCCEEEEEEEE
Confidence            4443 44433  4567899999987765 45899999998754332   33333 2345668999999999999999999


Q ss_pred             EecCcCCCCccccCCEEccC
Q psy12426        386 VNKIGESLPLVCQSPITAKD  405 (616)
Q Consensus       386 ~n~~g~~~~~~~s~~~~~~~  405 (616)
                      .|..|.|.++   ..+.+.+
T Consensus        92 ~n~~G~g~~S---~~v~~~T  108 (111)
T d1x5ka1          92 RNSKGMGPMS---EAVQFRT  108 (111)
T ss_dssp             ECSSCBCCCC---CCEEEEC
T ss_pred             EcCCCCcCCC---CCEEEEC
Confidence            9999988774   4455543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.61  E-value=3.8e-08  Score=70.72  Aligned_cols=72  Identities=21%  Similarity=0.243  Sum_probs=56.1

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      +....+.+|+.++|.|.+.+.+.+ .+.|++++..+...          ...|.|.++...|+|.|+|.|.|..++.  .
T Consensus        11 P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~----------~~~l~i~~v~~~dsG~Y~C~a~ns~~S~--~   78 (85)
T d2fcba1          11 PQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH----------TQPSYRFKANNNDSGEYTCQTGQTSLSD--P   78 (85)
T ss_dssp             SCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC----------CSSEEEEECCGGGCEEEEEECTTSBCCC--C
T ss_pred             CCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc----------ccceEEeeccccCCcEEEEECCCCcccc--c
Confidence            456788999999999999998876 68899999876532          2368899999999999999998764433  3


Q ss_pred             EEEEE
Q psy12426        302 AKVTV  306 (616)
Q Consensus       302 ~~l~v  306 (616)
                      +.|.|
T Consensus        79 v~l~V   83 (85)
T d2fcba1          79 VHLTV   83 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44444

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=5.4e-08  Score=70.91  Aligned_cols=78  Identities=27%  Similarity=0.319  Sum_probs=61.8

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc--cccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM--GDVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      +|.+ +.+..++.+++.|+|++|.    ..+.+|.|.++......|...  .......+.|.+|.+++.|.|+|.|.|..
T Consensus         3 ~P~~-l~v~~vt~~sv~l~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   77 (89)
T d1fnfa3           3 SPTG-IDFSDITANSFTVHWIAPR----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGR   77 (89)
T ss_dssp             CCEE-EEEESCCSSEEEEEEECCS----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETT
T ss_pred             cCcC-CEEEEecCCEEEEEEEeCC----CEEeeEEEEEEECCCCCceEEEEECCCccEEEECCCcccCEEEEEEEEEcCC
Confidence            5665 7888899999999999763    357899999987655444322  23556789999999999999999999999


Q ss_pred             cCCCC
Q psy12426        390 GESLP  394 (616)
Q Consensus       390 g~~~~  394 (616)
                      |.+.+
T Consensus        78 g~s~p   82 (89)
T d1fnfa3          78 EESPL   82 (89)
T ss_dssp             EECCC
T ss_pred             cCcCC
Confidence            98765

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=9.9e-08  Score=69.57  Aligned_cols=79  Identities=19%  Similarity=0.305  Sum_probs=64.0

Q ss_pred             CCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc-cccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM-GDVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       311 ~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      .||.+ +.+..+...++.|+|.+|.    ..+.+|.|++....+..+... .......+.+.+|.+++.|.|+|.|.|..
T Consensus         3 spP~~-l~v~~~~~~si~v~W~~p~----~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   77 (90)
T d1fnha2           3 SPPRR-ARVTDATETTITISWRTKT----ETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDN   77 (90)
T ss_dssp             CCCEE-EEEEEECSSEEEEEEECCS----SCCCCEEEEEEESSSSCCEEEECCTTCSEEEEESCCTTCEEEEEEEEEETT
T ss_pred             CcCCC-CEEEEecCCEEEEEEECCC----CCCceeEEEEEEccCCceEEEecCCCccEEEeCCCCCCcEEEEEEEEEeCC
Confidence            35666 7888999999999999753    368899999988666554433 34567889999999999999999999999


Q ss_pred             cCCCC
Q psy12426        390 GESLP  394 (616)
Q Consensus       390 g~~~~  394 (616)
                      |.+.+
T Consensus        78 g~s~p   82 (90)
T d1fnha2          78 ARSSP   82 (90)
T ss_dssp             EECCC
T ss_pred             CCcCC
Confidence            98764

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=6.9e-08  Score=70.49  Aligned_cols=81  Identities=12%  Similarity=0.101  Sum_probs=63.0

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE-EEc-cccccceEEeccccCCCeEEEEEEEEe
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPM-GDVSGTYTRAENLIEGHDYNFRVKAVN  387 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~-~~~-~~~~~~~~~i~~L~~~~~y~~~v~a~n  387 (616)
                      +.+|.+ +.+..++.+++.|+|.+|.    ..+.+|.|.+...+...+ ... .......+.|.+|.+++.|.|+|.|.|
T Consensus         2 ld~P~~-l~v~~~s~~s~~l~W~~p~----~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   76 (90)
T d1tena_           2 LDAPSQ-IEVKDVTDTTALITWFKPL----AEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRR   76 (90)
T ss_dssp             CCCCEE-EEEESCCSSCEEEEEECCS----SCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECSCCTTCEEEEEEEEEE
T ss_pred             CCCCCC-cEEEEecCCEEEEEEEeCc----eEeccEEEEEEEcCCCceeEEEEecCCcceeeEeeecCCCEEEEEEEEEe
Confidence            346666 7888889999999999763    357899999987654332 222 235667899999999999999999999


Q ss_pred             cCcCCCCc
Q psy12426        388 KIGESLPL  395 (616)
Q Consensus       388 ~~g~~~~~  395 (616)
                      ..|.+.+.
T Consensus        77 ~~g~s~~~   84 (90)
T d1tena_          77 GDMSSNPA   84 (90)
T ss_dssp             TTEECCCE
T ss_pred             CCCEeCCE
Confidence            99987653

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=9.6e-08  Score=73.42  Aligned_cols=96  Identities=17%  Similarity=0.205  Sum_probs=69.1

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCC-----CCceEEEEEEEEeCCCCCE--EE-ccccccceEEeccccCCCeEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDG-----GTDILHYVVEKMDMETGRW--VP-MGDVSGTYTRAENLIEGHDYN  380 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~-----~~~i~~y~v~~~~~~~~~~--~~-~~~~~~~~~~i~~L~~~~~y~  380 (616)
                      +|.+|.+ |.+. ...+.+.|+|..|...+     ...+..|.++++..+...+  .. ........+.+.+|.+++.|.
T Consensus         5 kP~pP~n-l~v~-~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~   82 (114)
T d2gysa2           5 QPPEPRD-LQIS-TDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYV   82 (114)
T ss_dssp             CCCCCEE-EEEE-EETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTTCCTTCEEE
T ss_pred             cCCcCCC-eEEE-EeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCCCCCCcEEE
Confidence            5778887 7764 56779999999876543     2345789999987655332  22 223455678889999999999


Q ss_pred             EEEEEEecCcC---CCCccccCCEEccCC
Q psy12426        381 FRVKAVNKIGE---SLPLVCQSPITAKDP  406 (616)
Q Consensus       381 ~~v~a~n~~g~---~~~~~~s~~~~~~~~  406 (616)
                      |+|+|.|..|.   +.++.+|..+...++
T Consensus        83 ~rVRa~~~~g~~~~g~wS~WS~~v~~~t~  111 (114)
T d2gysa2          83 ARVRTRLAPGSRLSGRPSKWSPEVCWDSQ  111 (114)
T ss_dssp             EEEEEEECTTSSCCBCCCCCCCCEEEECC
T ss_pred             EEEEEEeCCCCCCCCCccCCcCCEeeeCc
Confidence            99999998886   456777888887643

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.6e-07  Score=69.61  Aligned_cols=96  Identities=15%  Similarity=0.216  Sum_probs=71.1

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCC-CCceEEEEEEEEeCCCC-CEE--EccccccceEEeccccCCCeEEEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDG-GTDILHYVVEKMDMETG-RWV--PMGDVSGTYTRAENLIEGHDYNFRVK  384 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~-~~~i~~y~v~~~~~~~~-~~~--~~~~~~~~~~~i~~L~~~~~y~~~v~  384 (616)
                      .+.+|.+ +.+..++.+++.|+|..|...+ ......|.++++..... .+.  .........+.+.+|.+++.|.|+|+
T Consensus         2 rl~pP~~-l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~rVr   80 (104)
T d2b5ib2           2 RLMAPIS-LQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVR   80 (104)
T ss_dssp             CCCCCEE-EEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECSCCTTCEEEEEEE
T ss_pred             ccCCCCC-cEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECCCCCCCEEEEEEE
Confidence            3567777 8889999999999999876543 34567888888764332 111  11224566789999999999999999


Q ss_pred             EEecCcC-CCCccccCCEEccC
Q psy12426        385 AVNKIGE-SLPLVCQSPITAKD  405 (616)
Q Consensus       385 a~n~~g~-~~~~~~s~~~~~~~  405 (616)
                      |.|..|. +.+++++..+.+.+
T Consensus        81 a~~~~g~~g~wS~wS~~v~~~T  102 (104)
T d2b5ib2          81 VKPLQGEFTTWSPWSQPLAFRT  102 (104)
T ss_dssp             EEESCCSSCCCCCCCCCEEEEC
T ss_pred             EEECCCCCCCCCCCcCCEEEEC
Confidence            9999884 66777788777664

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=9.8e-08  Score=69.88  Aligned_cols=79  Identities=25%  Similarity=0.403  Sum_probs=60.9

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc--cccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM--GDVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~--~~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      +|.+ +.+..++.+++.|+|.++.   +..+.+|.|+++..+...+...  .....+.+.+.+|.+++.|.|+|.|.+..
T Consensus         3 pP~~-l~~~~~~~~sv~l~W~~p~---~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   78 (91)
T d1fnfa2           3 PPTD-LRFTNIGPDTMRVTWAPPP---SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQ   78 (91)
T ss_dssp             CCEE-EEEESCCSSCEEEEEECCT---TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred             cCCc-eEEEEeCCCEEEEEEEecC---CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEeceeCCCEEEEEEEEEcCC
Confidence            4554 7777888999999999763   2368899999987655433222  23456789999999999999999999999


Q ss_pred             cCCCC
Q psy12426        390 GESLP  394 (616)
Q Consensus       390 g~~~~  394 (616)
                      |.+.+
T Consensus        79 g~S~p   83 (91)
T d1fnfa2          79 HESTP   83 (91)
T ss_dssp             EECCC
T ss_pred             CCCCC
Confidence            88654

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.1e-07  Score=69.16  Aligned_cols=70  Identities=16%  Similarity=0.246  Sum_probs=55.4

Q ss_pred             cCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC-EEEcc-ccccceEEeccccCCCeEEEEEEEEecCcCCCCc
Q psy12426        323 TKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR-WVPMG-DVSGTYTRAENLIEGHDYNFRVKAVNKIGESLPL  395 (616)
Q Consensus       323 ~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~-~~~~~-~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~~~  395 (616)
                      ..+++.|+|++|.   +..+.+|.|+|+..++.. |.... ......+.|.+|.|++.|.|+|.|.|..|.++.+
T Consensus        14 ~~~s~~vsW~~P~---~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~gL~P~t~Y~v~v~av~~~G~s~~~   85 (93)
T d1owwa_          14 QPNSHPIQWNAPQ---PSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVT   85 (93)
T ss_dssp             CTTCEEEEEECCS---SSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECSCCSSEEEEEEEEEEESSSCEEEE
T ss_pred             CCCEEEEEeeccc---ccceeEEEEEEeeccccceeeeeccCCCccEEEECCcccCcEEEEEEEEEeCCCccCcE
Confidence            3479999999864   347999999999765433 43332 3566789999999999999999999999987754

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=3.6e-08  Score=76.96  Aligned_cols=86  Identities=17%  Similarity=0.216  Sum_probs=61.3

Q ss_pred             cCCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE-------E-Ecc---------ccccceEEe
Q psy12426        308 DIPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-------V-PMG---------DVSGTYTRA  370 (616)
Q Consensus       308 ~~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~-------~-~~~---------~~~~~~~~i  370 (616)
                      ..|.+|.+ +.+.. ..+++.|+|.+|...++ .|..|.|+++......+       . ...         ......+.+
T Consensus         6 ~~P~aP~~-v~v~~-~~~si~l~W~~P~~~~g-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   82 (123)
T d1wfta_           6 SGPGAPST-VRISK-NVDGIHLSWEPPTSPSG-NILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAH   82 (123)
T ss_dssp             SCCCCCEE-EEEEE-CSSEEEEEEECCSSCCS-SCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCC
T ss_pred             CCCcCCcc-cEEEe-CCCEEEEEecCchhcCC-ceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEE
Confidence            35666765 66644 57889999998877655 89999999976433211       1 110         112345677


Q ss_pred             ccccCCCeEEEEEEEEecCcCCCCcc
Q psy12426        371 ENLIEGHDYNFRVKAVNKIGESLPLV  396 (616)
Q Consensus       371 ~~L~~~~~y~~~v~a~n~~g~~~~~~  396 (616)
                      .+|.+++.|.|+|+|.|..|.|+++.
T Consensus        83 ~~L~p~t~Y~frV~A~N~~G~Gp~S~  108 (123)
T d1wfta_          83 IDYTSRPAIVFRISAKNEKGYGPATQ  108 (123)
T ss_dssp             CBCSSSCEEEEEEEEBSSSSBCCCEE
T ss_pred             cCCCCCCEEEEEEEEecCCcCCCCCC
Confidence            89999999999999999999998753

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=1.8e-07  Score=68.64  Aligned_cols=79  Identities=24%  Similarity=0.406  Sum_probs=61.4

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEc----cccccceEEeccccCCCeEEEEEEEEe
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPM----GDVSGTYTRAENLIEGHDYNFRVKAVN  387 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~----~~~~~~~~~i~~L~~~~~y~~~v~a~n  387 (616)
                      +|.+ +.+..++..++.|+|.+|.    ..+.+|.|+++......+...    .......+.|.+|.|++.|.|+|.|.|
T Consensus         3 aP~~-l~v~~~~~~sv~v~W~~p~----~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~   77 (92)
T d1tdqa2           3 APKN-LRVGSRTATSLDLEWDNSE----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVM   77 (92)
T ss_dssp             CCEE-EEEEEECSSCEEEEEECCS----SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEE
T ss_pred             cCcC-CEEEEecCCEEEEEEEecC----CcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECCccCCCEEEEEEEEEe
Confidence            4555 7788889999999999763    357899999987655443222    224557899999999999999999999


Q ss_pred             cCcCCCCc
Q psy12426        388 KIGESLPL  395 (616)
Q Consensus       388 ~~g~~~~~  395 (616)
                      ..|.+.++
T Consensus        78 ~~g~s~p~   85 (92)
T d1tdqa2          78 NSKQSIPA   85 (92)
T ss_dssp             TTEECCCE
T ss_pred             CCCEecCE
Confidence            99987653

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.8e-07  Score=68.90  Aligned_cols=79  Identities=25%  Similarity=0.397  Sum_probs=62.7

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc--ccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG--DVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~--~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      +|.+ +.+..++.+++.|+|.+|..    .+.+|.+.++......+....  ......+.+.+|.+++.|.|+|.|.|..
T Consensus         4 ~P~~-l~v~~vt~~sv~l~W~~p~~----~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~   78 (94)
T d1j8ka_           4 RPKG-LAFTDVDVDSIKIAWESPQG----QVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDD   78 (94)
T ss_dssp             CCCC-CEEEEEETTEEEEECCCCSS----CCSCEEEEEEETTTEEEEECCCCCSSCCEEEECSCCCCSEEEEEEEECSSS
T ss_pred             CCCC-CEEEEecCCEEEEEEeCCCc----cccceEEEEEeecCCCceEEEecCCCccEEEECCCCCCCEEEEEEEEEeCC
Confidence            4566 88899999999999997642    477899999876555444432  2557789999999999999999999999


Q ss_pred             cCCCCc
Q psy12426        390 GESLPL  395 (616)
Q Consensus       390 g~~~~~  395 (616)
                      |.+.+.
T Consensus        79 g~S~p~   84 (94)
T d1j8ka_          79 MESQPL   84 (94)
T ss_dssp             CCCCCE
T ss_pred             CCcCCE
Confidence            987653

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=8.8e-08  Score=70.65  Aligned_cols=82  Identities=15%  Similarity=0.084  Sum_probs=62.8

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEcc--ccccceEEeccccCCCeEEEEEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMG--DVSGTYTRAENLIEGHDYNFRVKAV  386 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~--~~~~~~~~i~~L~~~~~y~~~v~a~  386 (616)
                      +|.+|.+ +.+......++.|+|.++.+ ++. ...|.|.++......|....  ......+.+.+|.+++.|.|+|.|.
T Consensus         3 PP~~P~n-~~~~~~~~~si~~~W~p~~~-~~~-~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~   79 (95)
T d1bqua1           3 PPEKPKN-LSCIVNEGKKMRCEWDGGRE-THL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE   79 (95)
T ss_dssp             CCCCCEE-EEEEEETTSCCEEEEECCSC-CSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEE
T ss_pred             CcCCCee-eEEEEccCCEEEEEEeCccc-CCC-ceEEEEEEEEcccceeEeecccccceeeeeeeecCCCcEEEEEEEEE
Confidence            6778877 78888899999999997754 343 46899998876554433332  2445567778999999999999999


Q ss_pred             ecCcCCC
Q psy12426        387 NKIGESL  393 (616)
Q Consensus       387 n~~g~~~  393 (616)
                      |..|.+.
T Consensus        80 N~~G~s~   86 (95)
T d1bqua1          80 NALGKVT   86 (95)
T ss_dssp             ETTEEEE
T ss_pred             eCCcccc
Confidence            9999865

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.53  E-value=2.6e-08  Score=75.59  Aligned_cols=79  Identities=15%  Similarity=0.085  Sum_probs=58.9

Q ss_pred             ceEEEcCCeEEEEEEE-eeecCceeEEEECCeeeccc-------CcEEEEecCCceEEEecCCCCCCcE---EEEEEEEc
Q psy12426        225 DIKVRAGSNFEFDINV-IGEPIPTKEWLCNDITIISK-------DRFKIVNDDKSTKLKVFDSKRGDSG---IYTLAVKN  293 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~-~~~p~~~~~W~~~~~~~~~~-------~~~~~~~~~~~~~l~i~~l~~~~~g---~y~c~a~n  293 (616)
                      +..+.+|+.+.|.|.+ .|.|.|.+.|++++..+...       .++.+..   ...|.|.+++..|+|   .|.|.|.|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~gd~g~Y~C~A~N   87 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP---DGNLYFTIVTKEDVSDIYKYVCTAKN   87 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECT---TSCEEEEEECGGGCCSSEEEEEEEEC
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccc---ccccEEeeeEeeccCCceEEEEEEEe
Confidence            3456789999999986 89999999999987665332       1222222   237999999888766   79999999


Q ss_pred             CCCCceeeEEEEE
Q psy12426        294 SWGTDKGTAKVTV  306 (616)
Q Consensus       294 ~~g~~~~~~~l~v  306 (616)
                      ..|.......+.+
T Consensus        88 ~~g~~~~~~~~~~  100 (111)
T d1biha2          88 AAVDEEVVLVEYE  100 (111)
T ss_dssp             TTCSSCEEEEEEE
T ss_pred             CCCCceEEEEEEE
Confidence            9998766554443

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.5e-08  Score=72.03  Aligned_cols=80  Identities=14%  Similarity=0.155  Sum_probs=54.5

Q ss_pred             CceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426         10 GDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      +++....|++|+|.|.+. .|.+.|.|++++..+..  ...+  ....   .-...+.               ......+
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~--~~~~---~~~~~~~---------------~~~~~~s   61 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEF--RAFS---SFKNRVY---------------LDTVSGS   61 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEE--EECG---GGTTSEE---------------ECTTTCC
T ss_pred             cEEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecce--eeCC---CccceEE---------------EcCCeeE
Confidence            567889999999999864 68999999999987642  0000  0000   0000000               0223578


Q ss_pred             eEecCcccCCeEEEEEEEEcCCC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      |.|.++++.|+|.|.|.|.|..+
T Consensus        62 L~I~~l~~~DsG~Y~c~~~n~~~   84 (93)
T d1ccza1          62 LTIYNLTSSDEDEYEMESPNITD   84 (93)
T ss_dssp             EEECSCCGGGCEEEEEECTTCCS
T ss_pred             EEEEecChhhCEEEEEEEECCCc
Confidence            99999999999999999987655

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1e-07  Score=67.80  Aligned_cols=72  Identities=17%  Similarity=0.170  Sum_probs=52.5

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCc-eeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCCCCceee
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIP-TKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSWGTDKGT  301 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~g~~~~~  301 (616)
                      |....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...          ...|.|.+++.+|+|.|+|.|.|..++.  .
T Consensus         8 P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~v~~~d~G~Y~C~a~~s~~S~--~   75 (82)
T d1f2qa1           8 PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQQVNESE--P   75 (82)
T ss_dssp             SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECTTSSCCC--C
T ss_pred             CCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc----------cceeEECCCChhhCCcEEEEecCCCCcc--c
Confidence            345678899999999999999887 46678888765422          2379999999999999999998754433  4


Q ss_pred             EEEEE
Q psy12426        302 AKVTV  306 (616)
Q Consensus       302 ~~l~v  306 (616)
                      +.|.|
T Consensus        76 v~l~V   80 (82)
T d1f2qa1          76 VYLEV   80 (82)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44544

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.9e-07  Score=68.59  Aligned_cols=81  Identities=22%  Similarity=0.327  Sum_probs=59.2

Q ss_pred             CCCCCCCccceeecC-CeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC---EEEccccccceEEeccccCCCeEEEEEEE
Q psy12426        310 PSPPEGPLKPSNITK-SSCNLEWRAPRDDGGTDILHYVVEKMDMETGR---WVPMGDVSGTYTRAENLIEGHDYNFRVKA  385 (616)
Q Consensus       310 p~~p~~~~~~~~~~~-~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~---~~~~~~~~~~~~~i~~L~~~~~y~~~v~a  385 (616)
                      +.+|.+ +.+..... +.+.|+|.++..   ..+.+|.|.|+...+..   ...........+.|.+|.+++.|.++|.|
T Consensus         2 ~~PP~~-l~v~~~~~ts~i~v~W~~p~~---~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a   77 (94)
T d1fnfa1           2 LSPPTN-LHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYT   77 (94)
T ss_dssp             CCCCEE-EEEEECSSSSCEEEEEECCSC---SSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCCCCTTSCEEEEEEE
T ss_pred             CCcCcC-cEEEEecCCCEEEEEeeCCCC---CCeeEEEEEEEEecccCceEEEEEeCCCccEEEECCCCCCCEEEEEEEE
Confidence            345665 67766654 458999997632   35889999998754433   22222345678999999999999999999


Q ss_pred             EecCcCCCC
Q psy12426        386 VNKIGESLP  394 (616)
Q Consensus       386 ~n~~g~~~~  394 (616)
                      .|..|.+.+
T Consensus        78 ~~~~g~s~p   86 (94)
T d1fnfa1          78 VKDDKESVP   86 (94)
T ss_dssp             EETTEECCC
T ss_pred             EcCCCEeCC
Confidence            999987654

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.1e-07  Score=69.90  Aligned_cols=75  Identities=17%  Similarity=0.196  Sum_probs=55.8

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEECCeeeccc----------CcEEEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISK----------DRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~----------~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .++....|++++|.|.. ..|.+.+.|.+++..+...          .+..+.......+|+|.+++++|+|.|+|.+.|
T Consensus         3 ~~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n   81 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (93)
T ss_dssp             EEEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEEC
Confidence            45678899999999986 4688899999998775311          111222233456899999999999999999988


Q ss_pred             CCCCce
Q psy12426        294 SWGTDK  299 (616)
Q Consensus       294 ~~g~~~  299 (616)
                      ..+...
T Consensus        82 ~~~t~~   87 (93)
T d1ccza1          82 ITDTMK   87 (93)
T ss_dssp             CCSCEE
T ss_pred             CCcEEE
Confidence            766543

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.5e-07  Score=67.39  Aligned_cols=79  Identities=20%  Similarity=0.222  Sum_probs=60.8

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE--EEccccccceEEeccccCCCeEEEEEEEEecC
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW--VPMGDVSGTYTRAENLIEGHDYNFRVKAVNKI  389 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~--~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~~  389 (616)
                      +|.+ +.+..++..++.|+|.++..    .+.+|.+++.......+  ..........+++.+|.+++.|.|+|.|.|..
T Consensus         2 pP~~-l~~~~v~~~si~l~W~~p~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~   76 (90)
T d1fnha1           2 APTD-LKFTQVTPTSLSAQWTPPNV----QLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDT   76 (90)
T ss_dssp             CCEE-EEEEEECSSCEEEEEECCSS----CCSEEEEEEEESSSCSCCCEEEECTTCCEEEECSCCTTCEEEEEEEEEETT
T ss_pred             CCCC-EEEEEecCCEEEEEEEccce----eccceEEEEEeeeCCCceEEEEeCCCCeEEEEecccCceEEEEEEEEEeCC
Confidence            3455 78889999999999997643    46778888876444332  22233566789999999999999999999999


Q ss_pred             cCCCCc
Q psy12426        390 GESLPL  395 (616)
Q Consensus       390 g~~~~~  395 (616)
                      |.+.++
T Consensus        77 g~s~~~   82 (90)
T d1fnha1          77 LTSRPA   82 (90)
T ss_dssp             EECCCE
T ss_pred             CCcCCE
Confidence            988764

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=4.4e-08  Score=83.99  Aligned_cols=84  Identities=12%  Similarity=0.171  Sum_probs=44.9

Q ss_pred             CCCCCCCCEEEEecCCeEEEEecCCCCCCCCcceeEEEEEeeCCC-CceEeEeecCCccEEEcCCCCCCCeEEEEEEEEc
Q psy12426        409 RPDRPGQPTVTDWGKDHVDLEWTPPKKDGGSPISQYIIEKKPKYG-PWEKACIVPANITATSVPDLKEGEEYEFRVIAVN  487 (616)
Q Consensus       409 ~p~~p~~~~~~~~~~~~v~l~W~~p~~~~~~~i~~Y~i~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~v~a~n  487 (616)
                      .|++|.++.+...+.+++.|+|.+|..+++ .|.+|.|+|+.... .+..      .........|.+.+.|.+++.|.+
T Consensus         2 ~Ps~P~~~~~~~~s~~si~vsW~pP~~~ng-~i~~Y~V~~~~~~~~~~~~------~~~~~~~~~~~~~~~y~~~v~~~~   74 (196)
T d2dtge2           2 NPSVPLDPISVSNSSSQIILKWKPPSDPNG-NITHYLVFWERQAEDSELF------ELDYCLKGLKLPSRTWSPPFESED   74 (196)
T ss_dssp             CCCCCEEEEEEECSSSCEEEEEECCCCSSS-SCSEEECCEEEECCCCSCT------TCSSSCSCCCCCC-----------
T ss_pred             cCcCCcCCEEEeccCCEEEEEEECCCCCCC-cEEEEEEEEEcCCCCCcee------EEeeEEeccccceeEEEEEEEEEc
Confidence            588999999999999999999998876655 69999999987654 2111      111223345778899999999999


Q ss_pred             CCCCCCCCCCCC
Q psy12426        488 KGGPGEPSKASA  499 (616)
Q Consensus       488 ~~G~g~~s~~~~  499 (616)
                      ..|.+..+....
T Consensus        75 ~~~~~~~~~~~~   86 (196)
T d2dtge2          75 SQKHNQSEYEDS   86 (196)
T ss_dssp             ------------
T ss_pred             CCccccCcCCcc
Confidence            998876654433

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.9e-08  Score=75.49  Aligned_cols=90  Identities=16%  Similarity=0.155  Sum_probs=65.8

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEE---c-cccccceEEeccccCCCeEEEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVP---M-GDVSGTYTRAENLIEGHDYNFRVK  384 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~---~-~~~~~~~~~i~~L~~~~~y~~~v~  384 (616)
                      ++..|.+ +....+..+++.|+|.+|... ++.+.+|.|+++......+..   . .......+.+.+|.++ .|.|+|+
T Consensus         4 ~~d~P~~-v~~~~~~~~sv~l~W~pP~~~-ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-tY~~rV~   80 (102)
T d2dtge1           4 ADDIVGP-VTHEIFENNVVHLMWQEPKEP-NGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIR   80 (102)
T ss_dssp             CCCCCCC-CCCCSSSSSCCCCCCCCCCSC-SSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCC
T ss_pred             CCCCCCC-CEEEEECCCEEEEEEEeCCCC-cceEEEeeeEEEecCCCCceeeeeeecccceEEEEEecccee-eEEEEEE
Confidence            4566665 777778889999999987765 457999999998654333222   1 1234556888999997 5999999


Q ss_pred             EEecCcCCCCccccCCEEcc
Q psy12426        385 AVNKIGESLPLVCQSPITAK  404 (616)
Q Consensus       385 a~n~~g~~~~~~~s~~~~~~  404 (616)
                      |.|..|.|.++   ..+.+.
T Consensus        81 A~n~~G~g~~S---~~v~f~   97 (102)
T d2dtge1          81 ATSLAGNGSWT---EPTYFY   97 (102)
T ss_dssp             EEETTBCCCCC---CCCEEC
T ss_pred             EEcCCccCCCC---CCEEEE
Confidence            99999998874   444444

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=4.6e-07  Score=66.35  Aligned_cols=80  Identities=15%  Similarity=0.160  Sum_probs=62.5

Q ss_pred             CCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE--EEccccccceEEeccccCCCeEEEEEEEEec
Q psy12426        311 SPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW--VPMGDVSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       311 ~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~--~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      ..|.+ +.+..++.+++.|+|.+|.    ..+.+|.+.++..+...+  ..........+.+.+|.+++.|.|+|.|.|.
T Consensus         5 ~~P~~-l~v~~v~~~si~v~W~~p~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~   79 (93)
T d1tdqa1           5 DGPTQ-ILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRG   79 (93)
T ss_dssp             CCCEE-EEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEET
T ss_pred             CcCCC-CEEEEeCCCEEEEEEEccc----cCCCceEEEEEeccCcceeeEEEeCCCceEEEEeCcccceEEEEEEEEEeC
Confidence            45665 7888899999999999753    367899999987655432  2223355678999999999999999999999


Q ss_pred             CcCCCCc
Q psy12426        389 IGESLPL  395 (616)
Q Consensus       389 ~g~~~~~  395 (616)
                      .|.+.++
T Consensus        80 ~g~s~~~   86 (93)
T d1tdqa1          80 TNESDAS   86 (93)
T ss_dssp             TEECCCE
T ss_pred             CCCcCCE
Confidence            9987653

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.5e-07  Score=68.14  Aligned_cols=89  Identities=11%  Similarity=0.021  Sum_probs=56.5

Q ss_pred             CCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE--EEccccccceEEeccccCCCeEEEEEEEEe
Q psy12426        310 PSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW--VPMGDVSGTYTRAENLIEGHDYNFRVKAVN  387 (616)
Q Consensus       310 p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~--~~~~~~~~~~~~i~~L~~~~~y~~~v~a~n  387 (616)
                      +.|| + |.+.. ..+++.|.|..|...++..+..|.|+++......+  ..........+.+.+|.+++.|.|+|+|.+
T Consensus         6 ~~Pp-~-l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rVRa~~   82 (100)
T d2gysa4           6 MAPP-S-LQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRT   82 (100)
T ss_dssp             CCCC-E-EEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCCCCSSCCCEEEEEEEE
T ss_pred             CCCC-c-cEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCCCCCCCeEEEEEEEEE
Confidence            3444 3 55554 45689999998877666677899999986544321  111223467899999999999999999998


Q ss_pred             cCcC--CCCccccCCE
Q psy12426        388 KIGE--SLPLVCQSPI  401 (616)
Q Consensus       388 ~~g~--~~~~~~s~~~  401 (616)
                      ..|.  |.+++++..+
T Consensus        83 ~~g~~~g~WSeWS~~~   98 (100)
T d2gysa4          83 SRTGYNGIWSEWSEAR   98 (100)
T ss_dssp             CCTTCCBCCCCCCCCE
T ss_pred             CCCCCCCCccCCCCCc
Confidence            7764  6777777654

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1e-06  Score=67.79  Aligned_cols=82  Identities=17%  Similarity=0.231  Sum_probs=61.6

Q ss_pred             eeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCC----CCCEEEcc--ccccceEEeccccCCCeEEEEEEEEecCcCCC
Q psy12426        320 SNITKSSCNLEWRAPRDDGGTDILHYVVEKMDME----TGRWVPMG--DVSGTYTRAENLIEGHDYNFRVKAVNKIGESL  393 (616)
Q Consensus       320 ~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~----~~~~~~~~--~~~~~~~~i~~L~~~~~y~~~v~a~n~~g~~~  393 (616)
                      ..++..++.|+|+++..  ...+.+|.|.|+...    ...|....  ......+.|.+|.+++.|.|+|.|.|..|.|.
T Consensus        25 ~~~s~tsi~v~W~~p~~--~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~L~p~t~Y~f~V~A~n~~G~G~  102 (120)
T d1ujta_          25 VVLTPTTVQVTWTVDRQ--PQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGM  102 (120)
T ss_dssp             CCCBTTEEEEEEEESSC--CSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEESCCSSEEEEEEEEEESSSCCCC
T ss_pred             EEeCCCeEEEEecCCCC--CCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECCCCCCCEEEEEEEEEeCCcCcC
Confidence            34678899999997653  347899999998543    23455443  34567899999999999999999999999988


Q ss_pred             CccccCCEEccCC
Q psy12426        394 PLVCQSPITAKDP  406 (616)
Q Consensus       394 ~~~~s~~~~~~~~  406 (616)
                      .+   ..+.+.+.
T Consensus       103 ~S---~~~~~~T~  112 (120)
T d1ujta_         103 DS---ESKTVRTT  112 (120)
T ss_dssp             CC---CCEEEEEC
T ss_pred             CC---CCEEEEeC
Confidence            74   44444443

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2e-07  Score=72.91  Aligned_cols=80  Identities=11%  Similarity=0.083  Sum_probs=60.6

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCC--------------EEEc-----------cccccc
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGR--------------WVPM-----------GDVSGT  366 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~--------------~~~~-----------~~~~~~  366 (616)
                      .|.+ +.+...+.+++.|+|++|...++..+.+|.|.|+......              |...           ......
T Consensus         4 ~pln-l~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T d2dtge3           4 ELLK-FSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP   82 (125)
T ss_dssp             CBCC-CSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred             CCEE-EEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence            3444 7788899999999999887666678999999987543221              1110           113356


Q ss_pred             eEEeccccCCCeEEEEEEEEecCcCC
Q psy12426        367 YTRAENLIEGHDYNFRVKAVNKIGES  392 (616)
Q Consensus       367 ~~~i~~L~~~~~y~~~v~a~n~~g~~  392 (616)
                      .+.|.+|.|++.|.|+|+|.|..|.+
T Consensus        83 ~~~l~~L~p~T~Y~~~V~A~n~~G~~  108 (125)
T d2dtge3          83 GWLMRGLKPWTQYAIFVKTLVTFSDE  108 (125)
T ss_dssp             EEEECSCCSSCBCCBEEEECCCCCSS
T ss_pred             EEEECCCccCCEEEEEEEEEeCCCcc
Confidence            78999999999999999999999964

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1e-07  Score=73.32  Aligned_cols=97  Identities=20%  Similarity=0.297  Sum_probs=61.5

Q ss_pred             CCCCCCCcccee-ecCCeEEEEEeCCCCC-----CCCceEEEEEEEEeCCCCCEEEcc--ccccceEEeccccCCCeEEE
Q psy12426        310 PSPPEGPLKPSN-ITKSSCNLEWRAPRDD-----GGTDILHYVVEKMDMETGRWVPMG--DVSGTYTRAENLIEGHDYNF  381 (616)
Q Consensus       310 p~~p~~~~~~~~-~~~~~~~l~W~~~~~~-----~~~~i~~y~v~~~~~~~~~~~~~~--~~~~~~~~i~~L~~~~~y~~  381 (616)
                      |.+|.+ +.+.. .+..++.|+|.+|...     .+..+.+|.+...   +..+....  ......+.|.+|.+++.|.|
T Consensus        11 p~pP~~-v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~---~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~v   86 (117)
T d2cspa1          11 PAPPQD-VTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK---GQRVAEVIFPTADSTAVELVRLRSLEAKGV   86 (117)
T ss_dssp             CCCCEE-EEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESS---SSEEEEECCTTCSEEEEESHHHHHHTCSCB
T ss_pred             CCCCCc-cEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEee---cccceeeeeeccceeeeeccCCCCCcEEEE
Confidence            344443 44432 4556899999987542     2456777777542   12222222  24456788999999999999


Q ss_pred             EEEEEecCcCCCCccccCCEEccCCCCCCCCC
Q psy12426        382 RVKAVNKIGESLPLVCQSPITAKDPFGRPDRP  413 (616)
Q Consensus       382 ~v~a~n~~g~~~~~~~s~~~~~~~~~~~p~~p  413 (616)
                      +|+|.|..|.|..+   ..+.+.+....|+.|
T Consensus        87 ~V~A~n~~G~s~~S---~~v~i~t~~~vP~~P  115 (117)
T d2cspa1          87 TVRTLSAQGESVDS---AVAAVPPELLVPPTP  115 (117)
T ss_dssp             EEEEEESSCCCCCC---SCBCCCHHHHSCCCC
T ss_pred             EEEEEcCCCcCCCC---CCEEeeCCCCCCccc
Confidence            99999999998764   444444433445544

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=7.9e-07  Score=64.92  Aligned_cols=87  Identities=16%  Similarity=0.153  Sum_probs=57.5

Q ss_pred             CCCCCCCCccceeec-CCeEEEEEeCCCCCC---CCceEEEEEEEEeCCCCCEEEccccccceEEeccccCCCeEEEEEE
Q psy12426        309 IPSPPEGPLKPSNIT-KSSCNLEWRAPRDDG---GTDILHYVVEKMDMETGRWVPMGDVSGTYTRAENLIEGHDYNFRVK  384 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~-~~~~~l~W~~~~~~~---~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~y~~~v~  384 (616)
                      +|.||.+ +.+.... ...+.|+|..|....   +.....|.|+|+..+...|........+   ...|.+++.|.|+|+
T Consensus         1 KPdPP~n-l~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~~~~t---~~~L~p~~~Y~v~VR   76 (94)
T d3d85d3           1 KPDPPKN-LQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKT---SATVICRKNASISVR   76 (94)
T ss_dssp             CCCCCEE-EEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEEESSS---EEEECCCSSCEEEEE
T ss_pred             CCCCCcc-cEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEeccccce---EEEecCCCCEEEEEE
Confidence            4778877 6665543 456999999886532   2347899999988766666544433322   245789999999999


Q ss_pred             EEecCcCCCCccccC
Q psy12426        385 AVNKIGESLPLVCQS  399 (616)
Q Consensus       385 a~n~~g~~~~~~~s~  399 (616)
                      |.+..+.|.++++|.
T Consensus        77 a~~~~~~g~WSeWS~   91 (94)
T d3d85d3          77 AQDRYYSSSWSEWAS   91 (94)
T ss_dssp             EEESSSCCCCCCCEE
T ss_pred             EecCCCCCCCccCcC
Confidence            999999888877663

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.2e-06  Score=65.28  Aligned_cols=82  Identities=15%  Similarity=0.139  Sum_probs=60.6

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEE----------EccccccceEEeccccCCCe
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWV----------PMGDVSGTYTRAENLIEGHD  378 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~----------~~~~~~~~~~~i~~L~~~~~  378 (616)
                      .|..+.+ +.+..+..+++.|+|+++.    ..+.+|.|++.......+.          .........+.+.+|.+++.
T Consensus         3 ~Pp~~~~-l~v~~~t~~sv~v~W~pp~----~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p~t~   77 (101)
T d2cuia1           3 SRPRLSQ-LSVTDVTTSSLRLNWEAPP----GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTL   77 (101)
T ss_dssp             CCCCCCC-CEEESCCSSCEEEECCCCT----TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECSCCTTCE
T ss_pred             CccCCCC-cEEEEECCCEEEEEEEecc----ccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCCCCcCCE
Confidence            3445555 7888899999999998653    2578899988764332221          11123567789999999999


Q ss_pred             EEEEEEEEecCcCCCCc
Q psy12426        379 YNFRVKAVNKIGESLPL  395 (616)
Q Consensus       379 y~~~v~a~n~~g~~~~~  395 (616)
                      |.|+|.|.|..|.+..+
T Consensus        78 Y~~~V~a~~~~g~g~~~   94 (101)
T d2cuia1          78 YSLTLYGLRGPHKADSI   94 (101)
T ss_dssp             EEEEEEEECSSSEEEEE
T ss_pred             EEEEEEEEeCCcEeCCe
Confidence            99999999999987653

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=8.7e-07  Score=65.63  Aligned_cols=86  Identities=12%  Similarity=0.013  Sum_probs=56.0

Q ss_pred             CCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCE-EEccc--cccceEEeccccCCCeEEEEEEEEec
Q psy12426        312 PPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRW-VPMGD--VSGTYTRAENLIEGHDYNFRVKAVNK  388 (616)
Q Consensus       312 ~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~-~~~~~--~~~~~~~i~~L~~~~~y~~~v~a~n~  388 (616)
                      +|.+ +.+..... ...|+|++|..+++ ....|.+.........| ..+..  .....+.+.+|.++..|.|||+|.|.
T Consensus         3 ~P~n-v~v~s~n~-~~~L~W~pP~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Y~fRV~A~n~   79 (98)
T d1fyhb1           3 TPTN-VTIESYNM-NPIVYWEYQIMPQV-PVFTVEVKNYGVKNSEWIDACINISHHYCNISDHVGDPSNSLWVRVKARVG   79 (98)
T ss_dssp             CCEE-EEEECBSS-CCEEEEECCCCSSC-CEEEEEEEETTCSSSCCEEEEEEESSSEEECGGGCCSTTSCEEEEEEEEET
T ss_pred             cCCc-eEEEEeCC-cEEEEECCCCCCCC-CceeEEEEEeccccceeEEeeeecccceeeeEecccCCCCEEEEEEEEEcC
Confidence            4555 66655544 45699998877655 44444444433333333 33332  34455677899999999999999999


Q ss_pred             CcCCCCccccCC
Q psy12426        389 IGESLPLVCQSP  400 (616)
Q Consensus       389 ~g~~~~~~~s~~  400 (616)
                      .|.+.++.....
T Consensus        80 ~g~S~ws~s~~f   91 (98)
T d1fyhb1          80 QKESAYAKSEEF   91 (98)
T ss_dssp             TEECCCEECCCB
T ss_pred             CcccCCccCCCc
Confidence            999888764443

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.21  E-value=3.4e-06  Score=63.91  Aligned_cols=89  Identities=10%  Similarity=0.162  Sum_probs=55.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCC-CceeEeeeccCCccceeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDT-PKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~-~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      +.|.++.+.+|+.|+|+|...+.....+.|||.  |+.+..    .-........ ..++...        +.   ....
T Consensus         5 Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~----l~~~~~~~~~~~~~~~~~--------~~---~~~~   69 (113)
T d2bnqd1           5 QIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTS----LLLIQSSQREQTSGRLNA--------SL---DKSS   69 (113)
T ss_dssp             CSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEE----EEEEETTCCEEEETTEEE--------EE---ETTT
T ss_pred             eeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccce----eeeeccceecccccceee--------ee---ccCC
Confidence            458899999999999999988776678999983  332221    0000000000 0000000        00   1123


Q ss_pred             CCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      ....|.|.++.++|++.|.|.+....+
T Consensus        70 ~~~~L~i~~~~~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          70 GRSTLYIAASQPGDSATYLCAVRPTSG   96 (113)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEESSS
T ss_pred             CEEEeeeecCCCCCCcEEeEeEecCCC
Confidence            356899999999999999999985544

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.19  E-value=1.7e-06  Score=65.16  Aligned_cols=82  Identities=16%  Similarity=0.193  Sum_probs=55.4

Q ss_pred             CCCCCCCCcc-ceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCC----C--CEEEcc---ccccceEEeccccCCCe
Q psy12426        309 IPSPPEGPLK-PSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMET----G--RWVPMG---DVSGTYTRAENLIEGHD  378 (616)
Q Consensus       309 ~p~~p~~~~~-~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~----~--~~~~~~---~~~~~~~~i~~L~~~~~  378 (616)
                      +|.+|.+ +. +......+++++|.++.+ ++.+ ..|.+.+.....    .  .+....   ......+.+.+|.+++.
T Consensus         4 PP~~P~~-v~~i~~~~~~sv~~sW~p~~d-~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~t~   80 (107)
T d1cd9b1           4 PPASPSN-LSCLMHLTTNSLVCQWEPGPE-THLP-TSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQY   80 (107)
T ss_dssp             CCCCCEE-EEEEEETTTTEEEEEEECCSC-CSSC-CEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSC
T ss_pred             ccCCCcC-CEEEEecCCCEEEEEEcCCCC-CCCC-cceeEEEEEeecccceeeeeeeeeccccCccccEEEcCCCCcCce
Confidence            5677776 55 345567899999996654 4545 456555543221    1  122221   13456788999999999


Q ss_pred             EEEEEEEEecCcCCC
Q psy12426        379 YNFRVKAVNKIGESL  393 (616)
Q Consensus       379 y~~~v~a~n~~g~~~  393 (616)
                      |.|+|.|.|..|.+.
T Consensus        81 Y~frV~A~N~~G~s~   95 (107)
T d1cd9b1          81 MAIWVQAENMLGSSE   95 (107)
T ss_dssp             EEEEEEEEETTEEEE
T ss_pred             EEEEEEEEeCCcccc
Confidence            999999999999874

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=2.8e-06  Score=65.31  Aligned_cols=99  Identities=8%  Similarity=0.059  Sum_probs=56.4

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--Ceeeee-ccceEEEeecCCCCCceeEeeeccCCccceee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +|.|.. .|+.+.+.+|++|+|.|.+.+...+.+.|||.  |+.+.. ...  ....+....    +..-...+.+.-..
T Consensus         1 a~~~~~-~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l--~~~~~~~~~----~~~~~~~~~~~~~s   73 (122)
T d1nezg_           1 APELRI-FPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFV--VYMASSHNK----ITWDEKLNSSKLFS   73 (122)
T ss_dssp             CCEEEE-ESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEE--EEECSSSCC----EEECTTTTGGGTEE
T ss_pred             CCceEE-cCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEE--Eeeeccccc----eeeccCCCCCcEEE
Confidence            577774 49999999999999999998888888999983  222110 000  000000000    00000000000000


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ..........|+|.+++++|+|.|.|.+.
T Consensus        74 ~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          74 AMRDTNNKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EECCCCCEeEEEEcccccCCCEEEEeeEe
Confidence            00112234579999999999999999876

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=2.5e-06  Score=62.68  Aligned_cols=80  Identities=21%  Similarity=0.359  Sum_probs=57.0

Q ss_pred             ceEEEcCCeEEEEEEEeee--cCceeEEEECCeeecc----------cCcEEEEecCCceEEEecCCCCCCcEEEEEEEE
Q psy12426        225 DIKVRAGSNFEFDINVIGE--PIPTKEWLCNDITIIS----------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~--p~~~~~W~~~~~~~~~----------~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      .+....|+++.|.|.....  ....+.|++++..+..          ..+..+..+   .+|+|.+++..|+|.|+|.+.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~n---gSL~I~nl~~~DsG~Y~c~v~   80 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN---GDLKIKNLTRDDSGTYNVTVY   80 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT---SCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCC---ccEEEeCCCHHHCEEEEEEEE
Confidence            4566789999999964322  2347999998876531          123333222   389999999999999999999


Q ss_pred             cCCCCc--eeeEEEEEe
Q psy12426        293 NSWGTD--KGTAKVTVL  307 (616)
Q Consensus       293 n~~g~~--~~~~~l~v~  307 (616)
                      +..|..  ...+.|.|.
T Consensus        81 ~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          81 STNGTRILNKALDLRIL   97 (98)
T ss_dssp             ETTCCEEEEEEEEEEEE
T ss_pred             eCCCCEEEEEEEEEEEE
Confidence            988876  455666654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.12  E-value=2e-06  Score=63.22  Aligned_cols=80  Identities=13%  Similarity=0.125  Sum_probs=52.8

Q ss_pred             ceEecCCCeEEEEEE-Eee-ecCCeeeeeeCCeeeeeccceEEEeecCCCC-CceeEeeeccCCccceeeccccCCCCCc
Q psy12426         11 DIKLSAGTTLKFDAN-IIG-EPVPHVDWRAGGNPLNLRPIWEKCAQTEGDT-PKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~-~~g-~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~-~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      .+....|+.|+|.|. ... .....|.|+|++..+..     +.  +.... +...               ........+
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~-----~~--~~~~~~~~~~---------------~~~~~~ngS   61 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAE-----FK--RKMKPFLKSG---------------AFEILANGD   61 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEE-----EE--TTSCCEESST---------------TEEECTTSC
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeE-----Ec--cCCccccCCC---------------eEEECCCcc
Confidence            466788999999996 232 33357999999976642     00  00000 0000               000223578


Q ss_pred             eEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         88 GKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      |.|.+|+..|+|.|.|.+.+..|..
T Consensus        62 L~I~nl~~~DsG~Y~c~v~~~~g~~   86 (98)
T d1hnga1          62 LKIKNLTRDDSGTYNVTVYSTNGTR   86 (98)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTCCE
T ss_pred             EEEeCCCHHHCEEEEEEEEeCCCCE
Confidence            9999999999999999999888754

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=1.3e-05  Score=62.40  Aligned_cols=87  Identities=14%  Similarity=0.198  Sum_probs=61.6

Q ss_pred             cceEEEcCCeEEEEEEEeeec---CceeEEEECCeee-----------c------ccCcEEEEec---CCceEEEecCCC
Q psy12426        224 SDIKVRAGSNFEFDINVIGEP---IPTKEWLCNDITI-----------I------SKDRFKIVND---DKSTKLKVFDSK  280 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p---~~~~~W~~~~~~~-----------~------~~~~~~~~~~---~~~~~l~i~~l~  280 (616)
                      ..+.+..|++++|.|.+....   ...+.|++.+...           .      ...+..+...   .+..+|.|.+++
T Consensus        10 ~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          10 HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVR   89 (126)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEc
Confidence            347888999999999986433   3368999864321           0      0112233222   235789999999


Q ss_pred             CCCcEEEEEEEEcCCCCceeeEEEEEecCC
Q psy12426        281 RGDSGIYTLAVKNSWGTDKGTAKVTVLDIP  310 (616)
Q Consensus       281 ~~~~g~y~c~a~n~~g~~~~~~~l~v~~~p  310 (616)
                      ..|+|.|.|.+.+..+.....+.|.|.+++
T Consensus        90 ~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          90 FSDEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             hhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            999999999999988878888888887654

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4.3e-06  Score=61.58  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=60.1

Q ss_pred             CCCCCCCCccceeecCCeEEEEEeCCCCCCCCceEEEEEEEEeCCCCCEEEccc---cc--cceEEeccccCCCeEEEEE
Q psy12426        309 IPSPPEGPLKPSNITKSSCNLEWRAPRDDGGTDILHYVVEKMDMETGRWVPMGD---VS--GTYTRAENLIEGHDYNFRV  383 (616)
Q Consensus       309 ~p~~p~~~~~~~~~~~~~~~l~W~~~~~~~~~~i~~y~v~~~~~~~~~~~~~~~---~~--~~~~~i~~L~~~~~y~~~v  383 (616)
                      .|. |.+ +.+. .......|.|++|..+++  ...|.|+++..+...|.....   ..  ...+.+.+|..+..|.|||
T Consensus         4 lP~-P~n-v~~~-s~n~~~~L~W~pp~~~g~--~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~l~~~~~Y~fRV   78 (99)
T d1y6kr1           4 LPS-PPS-VWFE-AEFFHHILHWTPIPQQSE--STCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLDLYHSNGYRARV   78 (99)
T ss_dssp             CCC-CSC-EEEE-EETTEEEEEECCCTTCCT--TCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTTGGGSSCEEEEE
T ss_pred             CCC-CCc-ceEE-EECCEEEEEEcCCCCcCC--CCEEEEEEEECCCcceEEEEeeccccccceeeeeeecCCCCEEEEEE
Confidence            343 444 6654 445578899998777654  356999999888888887643   11  2234567889999999999


Q ss_pred             EEEecCcCCCCcc
Q psy12426        384 KAVNKIGESLPLV  396 (616)
Q Consensus       384 ~a~n~~g~~~~~~  396 (616)
                      +|.|..|.+.++.
T Consensus        79 rA~n~~g~S~Ws~   91 (99)
T d1y6kr1          79 RAVDGSRHSQWTV   91 (99)
T ss_dssp             EEEETTEECCCEE
T ss_pred             EEEcCCCcCCCcc
Confidence            9999999987754

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.01  E-value=1.4e-05  Score=60.73  Aligned_cols=84  Identities=6%  Similarity=0.020  Sum_probs=51.0

Q ss_pred             CCCCceEecCCCeEEEEEEEeee-cCCeeeeee--CCeeeeeccceEEEeecCCC------CCceeEeeeccCCccceee
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGE-PVPHVDWRA--GGNPLNLRPIWEKCAQTEGD------TPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~--~~~~l~~~G~Y~C~a~n~~~------~~~~~v~~~~~~~~p~w~~   77 (616)
                      +.|..+.+.+|++|+|.|...+. ....+.|||  .|+.+..      .+....+      ...++..           .
T Consensus         5 Q~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~------l~~~~~~~~~~~~~~~~rf~-----------~   67 (116)
T d1tvda_           5 QSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQF------VFYGDDSRSEGADFTQGRFS-----------V   67 (116)
T ss_dssp             CCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEE------EEEECSSCEEECGGGTTTEE-----------E
T ss_pred             ccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEE------eeecccccccccCccceEEE-----------E
Confidence            55889999999999999986543 556799998  3332221      1100000      0001111           0


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      .........+|+|.+++++|+|.|.|....
T Consensus        68 ~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   97 (116)
T d1tvda_          68 KHILTQKAFHLVISPVRTEDSATYYCAFTL   97 (116)
T ss_dssp             EEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             EecCceeEEeeeecCccccccccceeeEec
Confidence            000011234789999999999999998763

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=8e-06  Score=63.58  Aligned_cols=92  Identities=7%  Similarity=-0.024  Sum_probs=52.6

Q ss_pred             CCCceEecCCCeEEEEEEEeeec---CCeeeeeeCCeeeeeccceEEEeecC-----CCCCceeEeeeccCCccceeecc
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEP---VPHVDWRAGGNPLNLRPIWEKCAQTE-----GDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P---~p~v~W~~~~~~l~~~G~Y~C~a~n~-----~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.+.+.+.+|++|+|.|...+.+   ...|.|+|.+.....   +.+.....     ......++.          +...
T Consensus         8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~----------~~~~   74 (126)
T d1pkoa_           8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVV---HLYRNGKDQDAEQAPEYRGRTE----------LLKE   74 (126)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEE---EEEETTEECGGGSCSTTTTSEE----------EECT
T ss_pred             CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceE---EEEEeccccccccccccceeEE----------Eeec
Confidence            34568999999999999875333   345899997642210   11110000     000000111          0011


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEcCCCCC
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPG  112 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~  112 (616)
                      .......+|.|.+++..|+|.|.|.+.+..+..
T Consensus        75 ~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~  107 (126)
T d1pkoa_          75 SIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE  107 (126)
T ss_dssp             TGGGTEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             cccCCeEEEEEEEEchhHCeEEEEEEEECCCEE
Confidence            112234689999999999999999999866544

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.00  E-value=6.8e-06  Score=62.30  Aligned_cols=87  Identities=7%  Similarity=0.114  Sum_probs=53.9

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCC--eeeeeccceEEEeecCCCCC-ceeEeeeccCCccceeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGG--NPLNLRPIWEKCAQTEGDTP-KGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~-~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      +.|..+.+.+|+.|+|.|.....+...+.|||..  +....    ........... ..+..           .......
T Consensus         5 Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~----l~~~~~~~~~~~~~~~~-----------~~~~~~~   69 (114)
T d2cdea1           5 QSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVS----LTIMTFSENTKSNGRYT-----------ATLDADT   69 (114)
T ss_dssp             EECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCE----EEEECSSCSCEEETTEE-----------ECBCSSS
T ss_pred             eeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEE----eeeeeeeecccccCccc-----------eeecCcc
Confidence            4588999999999999999887777789999843  11110    00000000000 00000           0011122


Q ss_pred             CCCceEecCcccCCeEEEEEEEEcC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                      ...+|+|.++++.|+|.|.|.+...
T Consensus        70 ~~~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          70 KQSSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             SEEEEEECSCCGGGCSEEEEEEECS
T ss_pred             cccccEEcccChhhCcccceeeecC
Confidence            3567999999999999999999864

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.92  E-value=2.3e-05  Score=59.38  Aligned_cols=91  Identities=7%  Similarity=0.007  Sum_probs=52.2

Q ss_pred             CCCCceEecCCCeEEEEEEEe-eecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANII-GEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      +.|..+.|.+|++|+|.|... +.....+.|||.  ++.+..-  +..   +.... .....     +.......  ...
T Consensus         5 Q~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l--~~~---~~~~~-~~~~~-----~~~~~~~~--~~~   71 (114)
T d2ak4d1           5 QAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFL--IRR---NSFDE-QNEIS-----GRYSWNFQ--KST   71 (114)
T ss_dssp             CCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEE--EEE---ETTSC-SEEEE-----TTEEEEEE--TTT
T ss_pred             ecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEe--eeE---eeeee-cCCCC-----cceEEEEc--CCC
Confidence            458889999999999999854 444557899983  3322210  000   00000 00000     00000001  123


Q ss_pred             CCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      ....|.|.++.++|+|.|.|.+....+
T Consensus        72 ~~~~L~I~~~~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          72 SSFNFTITASQVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEECSBT
T ss_pred             CEEEEeecccccccCCCceEeCCCCCC
Confidence            356799999999999999998775443

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.91  E-value=1.8e-05  Score=59.31  Aligned_cols=77  Identities=9%  Similarity=0.123  Sum_probs=52.7

Q ss_pred             CCCCceEecCCCeEEEEEEEeee--cCCeeeeeeCC--e----eeeeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGE--PVPHVDWRAGG--N----PLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~--P~p~v~W~~~~--~----~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      +.|..+.+.+|+.|+|.|...+.  ....+.|||..  +    .+...|+|.-...+                       
T Consensus         4 Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~-----------------------   60 (112)
T d1sq2n_           4 QTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNS-----------------------   60 (112)
T ss_dssp             EECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEET-----------------------
T ss_pred             ecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEec-----------------------
Confidence            45889999999999999987653  34679999832  1    11114444322111                       


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~  109 (616)
                         ......|+|.+|+++|++.|.|.+....
T Consensus        61 ---~~~~~~L~I~~l~~~Dsa~YyCA~~~~~   88 (112)
T d1sq2n_          61 ---GSKSFSLRINDLTVEDGGTYRCGLGVAG   88 (112)
T ss_dssp             ---TTTEEEEEECSCCGGGCEEEEEEECBTT
T ss_pred             ---CCceeeeEecCCcCccCEEEeEEEecCC
Confidence               1123579999999999999999876433

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=5.6e-06  Score=61.77  Aligned_cols=83  Identities=5%  Similarity=-0.011  Sum_probs=50.7

Q ss_pred             EecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCC----CCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426         13 KLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEG----DTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus        13 ~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~----~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      .+.+|++|.|.|.........+.|+|+.........+.+......    ..-.+++.                .....+|
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~----------------l~~ngSL   73 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREI----------------IYSNGSL   73 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEE----------------ECTTSCE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEE----------------EcccccE
Confidence            467999999999833233457999997643221111111111100    00111222                2236799


Q ss_pred             EecCcccCCeEEEEEEEEcCCCC
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKGGP  111 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~g~  111 (616)
                      .|.+++..|+|.|.|.+.+..+.
T Consensus        74 ~I~~v~~~D~G~Y~c~v~~~~~~   96 (107)
T d1l6za1          74 LFQMITMKDMGVYTLDMTDENYR   96 (107)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEE
T ss_pred             EEcCCCchhCEEEEEEEEECCCC
Confidence            99999999999999999877653

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=4.2e-05  Score=57.66  Aligned_cols=86  Identities=9%  Similarity=0.067  Sum_probs=50.8

Q ss_pred             CCCCceEecCCCeEEEEEEEeee-cCCeeeeeeC--CeeeeeccceEEEeecCC--CCCceeEeeeccCCccceeecccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGE-PVPHVDWRAG--GNPLNLRPIWEKCAQTEG--DTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~--~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      +.|..+.+.+|++|+|.|...+. ....+.|||.  |+.+..    .....+..  ....++           +......
T Consensus         4 qsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~----l~~~~~~~~~~~~~~r-----------f~~~~~~   68 (114)
T d3bp5a1           4 FYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEK----QAAFSNGLSQPVQDAR-----------FQIIQLP   68 (114)
T ss_dssp             EESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEE----EEEEETTEEEESSCTT-----------EEEEECT
T ss_pred             ECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCee----eEEeeeccccccccCc-----------ceEEEeC
Confidence            35889999999999999997653 3456899983  322210    00000000  000000           1011111


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ......|.|.+++++|+|.|.|.+..
T Consensus        69 ~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          69 NRHDFHMNILDTRRNDSGIYLCGAIS   94 (114)
T ss_dssp             TSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCEEEEEECccCcCCCeEEEEEEEe
Confidence            22345699999999999999998874

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.1e-05  Score=58.47  Aligned_cols=85  Identities=9%  Similarity=-0.080  Sum_probs=57.8

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.|..+ |.. .|..|++|+|+|+.. .+...+.|+|+|......-.                             ....
T Consensus         5 PsLsa~-P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-----------------------------~~~~   52 (95)
T d1olla1           5 PFIWAE-PHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-----------------------------KPPE   52 (95)
T ss_dssp             CEEEEE-SCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-----------------------------SSCT
T ss_pred             CEEEee-CCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-----------------------------ccCC
Confidence            555544 544 478999999999864 44457889999864431000                             0000


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPT  118 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~  118 (616)
                      ......+.|.++.+.+.|.|+|...+..+-+++|.+.
T Consensus        53 ~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~l   89 (95)
T d1olla1          53 RINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL   89 (95)
T ss_dssp             TCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCE
T ss_pred             CccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCE
Confidence            1223578999999999999999998877777777443

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.90  E-value=2.1e-05  Score=59.58  Aligned_cols=87  Identities=10%  Similarity=0.051  Sum_probs=52.1

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      ++|..+.|.+|++|+|.|.......+.+.|||-  |+....    .....+..  ...   .    ..............
T Consensus         5 Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~----i~~~~~~~--~~~---~----~~~~~~~~~~~~~~   71 (115)
T d1i9ea_           5 QPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQL----LLKYYSGD--PVV---Q----GVNGFEAEFSKSNS   71 (115)
T ss_dssp             CCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEE----EEEECSSC--SEE---E----CGGGCEEECBTTTT
T ss_pred             cCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceee----eeeeccce--ecc---c----cCcceeEEEeCcCC
Confidence            567889999999999999977666678999983  322211    00000000  000   0    00000000111334


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ...|+|.++++.|+|.|.|.+.
T Consensus        72 ~~~L~I~~~~~~Dsg~YyCa~~   93 (115)
T d1i9ea_          72 SFHLRKASVHWSDSAVYFCAVS   93 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEecccccccccceeccccc
Confidence            5689999999999999999876

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.90  E-value=2.7e-05  Score=58.96  Aligned_cols=88  Identities=11%  Similarity=0.053  Sum_probs=52.7

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|+.|+|+|.....-...+.|||.  |+.+..      .+.......  ...     ..............
T Consensus         5 Q~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~------l~~~~~~~~--~~~-----~~~~~~~~~~~~~~   71 (115)
T d1j8hd1           5 QLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQL------LLKYTSAAT--LVK-----GINGFEAEFKKSET   71 (115)
T ss_dssp             CSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEE------EEEECSSCS--EEE-----CGGGCEEECBGGGT
T ss_pred             cCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCccee------eeEEeeccc--ccc-----cCCCCEEEECCCCC
Confidence            558899999999999999987666678999983  222221      000000000  000     00000000011223


Q ss_pred             CCceEecCcccCCeEEEEEEEEc
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ...|+|.+++++|++.|.|.+..
T Consensus        72 ~~~L~I~~~~~~Dsa~YyCa~~~   94 (115)
T d1j8hd1          72 SFHLTKPSAHMSDAAEYFCAVSE   94 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEeeccccccCCccceeeecC
Confidence            45799999999999999999874

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.89  E-value=1.9e-05  Score=59.78  Aligned_cols=86  Identities=7%  Similarity=0.045  Sum_probs=53.1

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCC-CceeEeeeccCCccceeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDT-PKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~-~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      +.|..+.+.+|+.|+|+|.......+.+.|||.  |+.+.    +.+........ ....           .........
T Consensus         6 Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~----~l~~~~~~~~~~~~~~-----------~~~~~~~~~   70 (115)
T d1lp9e1           6 QTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPK----LLLKSFTDNKRPEHQG-----------FHATLHKSS   70 (115)
T ss_dssp             ECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCE----EEEESCSSTTCCCCSS-----------CEECCBGGG
T ss_pred             cCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCcee----eeeeeeeccCCcceee-----------eeeeccCCC
Confidence            457888999999999999987777778999984  32222    11100000000 0000           000011123


Q ss_pred             CCCceEecCcccCCeEEEEEEEEc
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ....|.|.++++.|+|.|.|.+..
T Consensus        71 ~~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1lp9e1          71 SSFHLQKSSAQLSDSALYYCALFL   94 (115)
T ss_dssp             TBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CeEEeeccccccccCccceEEEEc
Confidence            356799999999999999998764

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.89  E-value=3e-05  Score=58.94  Aligned_cols=91  Identities=14%  Similarity=0.140  Sum_probs=55.0

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeec---CCCCCceeEeeeccCCccceeecccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQT---EGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n---~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      +.|..+.+.+|++|+|.|...+.....+.|||.  |+.+..-+.+. ...+   ..+..+.+           +.. ...
T Consensus         6 Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~-~~~~~~~~~~~~~~~-----------f~~-~~~   72 (118)
T d2ij0c1           6 QHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSH-QGFNAIYEQGVVKDK-----------FLI-NHA   72 (118)
T ss_dssp             EECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEE-TTSCCEECTTCCTTT-----------EEE-EEC
T ss_pred             EcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeecc-ccccceecccccccc-----------cee-ecc
Confidence            458889999999999999987766778999984  43332100000 0000   00000111           111 011


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      ......|.|.++.++|++.|.|.+.-..|
T Consensus        73 ~~~~~~L~i~~~~~~Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          73 SPTLSTLTVTSAHPEDSGFYVCSALAGSG  101 (118)
T ss_dssp             SSSEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             ccccccccccccccccCceEEEEEecCCC
Confidence            22345799999999999999999875443

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.87  E-value=2.8e-05  Score=58.95  Aligned_cols=89  Identities=8%  Similarity=0.171  Sum_probs=51.8

Q ss_pred             CCCCceEecCCCeEEEEEEEee-ecCCeeeeeeCC-----eeeeeccceEEE--eecCCCCCceeEeeeccCCccceeec
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIG-EPVPHVDWRAGG-----NPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~~-----~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      +.|..+.+.+|++|+|.|.+.+ .....+.|||..     +.|..-+.+...  .....+....+..           ..
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~-----------~~   71 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNI-----------IL   71 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCE-----------EE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEE-----------EE
Confidence            4588999999999999999876 345679999852     222110000000  0000000000000           00


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      .........|+|.+++++|+|.|.|.+.
T Consensus        72 ~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          72 ESSDSRRPFLSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             ESTTSSSCEEEECSCCGGGCEEEEEEEE
T ss_pred             EeCCCCeEEEeecccCCCCCcEEEEeEc
Confidence            1112335679999999999999999875

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.87  E-value=2.4e-05  Score=59.40  Aligned_cols=89  Identities=8%  Similarity=0.014  Sum_probs=51.4

Q ss_pred             CCCCceEecCCCeEEEEEEEe-eecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANII-GEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~-g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      +.|..+.+.+|++|+|.|... +.....+.|||.  |+.+..  .....-.+......+...           .......
T Consensus         4 Q~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~--l~~~~~~~~~~~~~~~~~-----------~~~~~~~   70 (115)
T d1fo0a_           4 QTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVF--LIRQDSYKKENATVGHYS-----------LNFQKPK   70 (115)
T ss_dssp             CCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEE--EEEEETTCCSCCEETTEE-----------EEEEGGG
T ss_pred             ccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEE--EEEEecceeecccCCceE-----------EEEeccC
Confidence            558899999999999999864 344557899984  222221  000000000000000000           0001122


Q ss_pred             CCCceEecCcccCCeEEEEEEEEcC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                      ....|.|.+++++|++.|.|.+...
T Consensus        71 ~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          71 SSIGLIITATQIEDSAVYFCAMRGD   95 (115)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             CEEEEEECCCCccccccccceeecC
Confidence            3457999999999999999998743

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.6e-05  Score=57.62  Aligned_cols=39  Identities=21%  Similarity=0.375  Sum_probs=30.0

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEe-eecCC--eeeeeeCCeeee
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANII-GEPVP--HVDWRAGGNPLN   44 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~-g~P~p--~v~W~~~~~~l~   44 (616)
                      |.|...+    .+.+|+.++|+|.+. |+|.+  .|+|+++++.+.
T Consensus         5 P~I~~~~----~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~   46 (109)
T d1vcaa1           5 PEIHLSG----PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMK   46 (109)
T ss_dssp             CEEEESS----CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEE
T ss_pred             CEEecCC----CccCCCeEEEEeEeCCcCCCCceEEEEeccCceee
Confidence            6665332    378999999999965 57864  689999999876

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.85  E-value=2.2e-05  Score=58.27  Aligned_cols=84  Identities=10%  Similarity=0.067  Sum_probs=52.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCC--eeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGG--NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|++|+|.|...+.-...+.|||..  +.+..      ......         -.+.+.+....... ...
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~------l~~~~~---------~~~~~~~~~f~~~~-~~~   68 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKL------LIYKAS---------TLKTGVPSRFSGSG-SGT   68 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEE------EEETTT---------EECTTSCTTEEEEE-ETT
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEE------EEEccc---------cCCCCcCCceeeec-cCC
Confidence            5588999999999999999876666679999853  22221      000000         00001111011110 223


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ...|.|.+++++|++.|.|.+.
T Consensus        69 ~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1op3k1          69 EFTLTISGLQFDDFATYHCQHY   90 (106)
T ss_dssp             EEEEEEESCCGGGCSEEEEEEE
T ss_pred             EEEEEEccccccCCCcEeeeeC
Confidence            4579999999999999999876

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=8.6e-06  Score=59.89  Aligned_cols=85  Identities=11%  Similarity=-0.028  Sum_probs=55.2

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.|... |.. .|..|++|+|.|.+. .+.-.+.|+|+|..... ....                          .....
T Consensus         8 PsLsa~-P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~-~~~~--------------------------~~~~~   57 (99)
T d1ucta1           8 PFISAK-SSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYR-EIGR--------------------------RLKFW   57 (99)
T ss_dssp             CCEEES-SCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEE-ECSE--------------------------ECC--
T ss_pred             CEEEec-CCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCce-eccc--------------------------cccCC
Confidence            556544 544 588999999999865 44557999998753321 0000                          00000


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSD  116 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~  116 (616)
                      ......+.|.++...|.|.|+|...+..+-+.+|.
T Consensus        58 ~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sd   92 (99)
T d1ucta1          58 NETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSD   92 (99)
T ss_dssp             --CCCEEEECSCCGGGCEEEEEEEEETTTEEEECC
T ss_pred             CCceEEEEecCCCHHHCceEEEEEECCCcccCCCC
Confidence            12345789999999999999999987666555553

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.84  E-value=2.2e-05  Score=58.20  Aligned_cols=84  Identities=11%  Similarity=0.101  Sum_probs=51.7

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|+.|+|.|.........+.|||.  |+.+..-..+.  .....             +.|.-.... ....
T Consensus         5 QsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~--~~~~~-------------~~~~~~~~~-~s~~   68 (106)
T d1a0ql1           5 QSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYT--STLLP-------------GIPSRFRGS-GSGR   68 (106)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETT--TEECT-------------TCCTTEEEE-EETT
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEcc--ccccC-------------CCCcceEee-cCCC
Confidence            348889999999999999987776667999984  22222100000  00000             011100000 0223


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ..+|+|.++.++|++.|.|.+.
T Consensus        69 ~~~L~I~~~~~~DsA~YyCa~~   90 (106)
T d1a0ql1          69 DYSFSISNLEPEDIATYYCLQY   90 (106)
T ss_dssp             EEEEEECSCCGGGCSEEEEEEC
T ss_pred             EeeeEehhhcccCCEeEEEEEe
Confidence            4689999999999999999875

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=7.1e-06  Score=60.18  Aligned_cols=85  Identities=6%  Similarity=-0.038  Sum_probs=50.6

Q ss_pred             ceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCceE
Q psy12426         11 DIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKGK   89 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l~   89 (616)
                      .+...+|++|+|.|.........+.|++....... .+.+.-.  .....-.+++..          ..........+|.
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~~r~~~----------~~~~~~~~~~sL~   70 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLT--KGPSKLNDRADS----------RRSLWDQGNFPLI   70 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEE--ECSSTTGGGEEC----------CGGGGGGTBCCEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeee--ecCceeccceEE----------EeccCCCCEEEEE
Confidence            35678999999999987777778999987543221 1111100  000001111111          0001112245799


Q ss_pred             ecCcccCCeEEEEEEEEc
Q psy12426         90 VLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        90 i~~l~~~~~~~y~c~a~n  107 (616)
                      |.+|++.|+|.|.|.+.+
T Consensus        71 I~~l~~~DsG~Y~C~v~~   88 (97)
T d2nxyb1          71 IKNLKIEDSDTYICEVED   88 (97)
T ss_dssp             ECSCCGGGCEEEEEEETT
T ss_pred             ECCCChHHCEEEEEEEec
Confidence            999999999999999864

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.83  E-value=2.3e-05  Score=58.01  Aligned_cols=82  Identities=12%  Similarity=0.145  Sum_probs=52.0

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--Ceeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccccC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      +.|..+.+.+|++|+|+|.........+.|||.  |+.+..  .... -.   ..+.... ..         ..+    .
T Consensus         6 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~-~~---~~~~~~~-~~---------~~~----~   67 (107)
T d1c5cl1           6 QSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDAT-KL---DSGAPKR-FS---------GSR----S   67 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTT-EE---CTTSCTT-EE---------EEE----E
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccc-cc---cCCCCCc-eE---------ecc----c
Confidence            458889999999999999988777777999983  333221  0000 00   0000000 00         001    2


Q ss_pred             CCCCceEecCcccCCeEEEEEEEE
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      .....|.|.+|+++|++.|.|.+.
T Consensus        68 ~~~~~L~I~~l~~~Dsa~YyCa~~   91 (107)
T d1c5cl1          68 GSDYSLTISSLESEDFADYYCLQY   91 (107)
T ss_dssp             TTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCEEEEEEhhhcccCCeEEEEecC
Confidence            235689999999999999999765

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.83  E-value=3.4e-05  Score=57.25  Aligned_cols=83  Identities=12%  Similarity=0.160  Sum_probs=51.9

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccc-eeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPI-WEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~-w~~~~~~~~   83 (616)
                      +.|..+.+.+|++|+|.|...+.-...+.|||.  |+.+..      ......         ..+.+.+. ....  ...
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~------i~~~~~---------~~~~~~~~rfs~~--~~~   68 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRL------LISGAT---------SLETWVPSRFSGS--DSG   68 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEE------EEETTT---------EECTTSCTTEEEE--CSS
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCcccee------EEeecc---------ccCCcccccccee--cCC
Confidence            558899999999999999987666567999984  222211      000000         00000000 1010  023


Q ss_pred             CCCceEecCcccCCeEEEEEEEE
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....|.|.+++++|++.|.|.+.
T Consensus        69 ~~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1ospl1          69 KDYTLSITSLQTEDVATYFCQQY   91 (107)
T ss_dssp             SSEEEEESSCCGGGCSEEEEEEC
T ss_pred             CeEEeEEcccccccCCcEEEeec
Confidence            45689999999999999999864

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.82  E-value=2.6e-05  Score=58.13  Aligned_cols=92  Identities=11%  Similarity=0.107  Sum_probs=51.0

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecC----CeeeeeeC--CeeeeeccceEEE-eecCCCCCceeEeeeccCCcccee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPV----PHVDWRAG--GNPLNLRPIWEKC-AQTEGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~----p~v~W~~~--~~~l~~~G~Y~C~-a~n~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      |.++......|++|++|+|+|.++|...    ..+.|+|.  |+.+.--+...-. ..+.....+++++.-.+       
T Consensus         2 v~L~qsg~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d-------   74 (120)
T d2agjh1           2 VTLKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKD-------   74 (120)
T ss_dssp             CEEECCCCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECC-------
T ss_pred             ceEEeECCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecc-------
Confidence            3445555667899999999999987543    45889985  3332210000000 00000001112211000       


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                          .......|+|.+|+++|.+.|.|...
T Consensus        75 ----~s~~~~~L~i~~l~~eDsAvYyCAr~  100 (120)
T d2agjh1          75 ----ASKKQVVLTLTNLDPVDTATYYCART  100 (120)
T ss_dssp             ----TTTTEEEEEEESCCGGGCEEEEEEEE
T ss_pred             ----cccceeeeeEEeeeeccceEEeeEec
Confidence                01223579999999999999999754

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.82  E-value=4.7e-05  Score=57.15  Aligned_cols=85  Identities=7%  Similarity=0.086  Sum_probs=52.8

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCC-CceeEeeeccCCccceeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDT-PKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~-~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      +.|..+.+.+|+.|+|.|...+.....+.|||.  |+.+..    .......... ..++..           .......
T Consensus         5 Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~----l~~~~~~~~~~~~~~~~-----------~~~~~~~   69 (111)
T d1bd2d1           5 QNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTF----LISISSIKDKNADGRFT-----------VFLNKSA   69 (111)
T ss_dssp             CCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEE----EEEEETTCSEEEETTEE-----------EEEETTT
T ss_pred             ccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCccee----eeeeeceeccccCCcce-----------EEEEccC
Confidence            558889999999999999977777778999984  332221    0000000000 000000           0001123


Q ss_pred             CCCceEecCcccCCeEEEEEEEE
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....|.|.++.++|++.|.|.+.
T Consensus        70 ~~~~L~I~~~~~~Dsa~YyCa~~   92 (111)
T d1bd2d1          70 KHLSLHIVPSQPGDSAVYFCAAM   92 (111)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEEEECCCcccccEEEEeecc
Confidence            45689999999999999999876

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.82  E-value=3.2e-05  Score=56.80  Aligned_cols=92  Identities=13%  Similarity=0.152  Sum_probs=53.0

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      |.+.++....+++|++|+|+|.++|....  .+.|+|.  |+.|.--|.+...  ..+.....+++++.-.         
T Consensus         2 v~L~esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~---------   72 (117)
T d1iqdb1           2 VQLVQSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTA---------   72 (117)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE---------
T ss_pred             CcEEeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeec---------
Confidence            44555677889999999999999987554  4789984  4433211100000  0000000111221100         


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                        ........|+|.+|+++|+..|.|...
T Consensus        73 --D~s~~t~~L~i~~L~~eDtAvYYCA~~   99 (117)
T d1iqdb1          73 --DTSTNIAYMELSSLRSDDTAVYYCAVP   99 (117)
T ss_dssp             --ETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             --ccccceEEEeecccCcCcceEEEEeEc
Confidence              002234569999999999999999864

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.82  E-value=2.8e-05  Score=57.88  Aligned_cols=84  Identities=7%  Similarity=0.074  Sum_probs=51.5

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCC--eeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGG--NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|++|+|.|.....-...+.|||..  +.+..  .+.+......             +.+.-.... ....
T Consensus         6 Q~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~--l~~~~~~~~~-------------~~~~~fs~~-~~~~   69 (107)
T d1j1pl_           6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRL--LIKYASQSIS-------------GIPSRFSGS-GSGT   69 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEE--EEETTTEECT-------------TSCTTEEEE-EETT
T ss_pred             CcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEE--eeecccCCCc-------------eeCCcceec-ccCC
Confidence            4588899999999999999776666679999853  22221  0000000000             000000000 0223


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ...|+|.+++++|++.|.|.+.
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1j1pl_          70 DFTLSINSVETEDFGMYFCQQA   91 (107)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEEEcccCcCCCEEEEEEcC
Confidence            4689999999999999999764

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.81  E-value=2.8e-05  Score=57.44  Aligned_cols=83  Identities=13%  Similarity=0.172  Sum_probs=50.1

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeCC--eeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAGG--NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      |..+.+.+|+.|+|+|...+.....+.|||..  +.+..      .........         .+.+.-. .........
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~------~~~~~~~~~---------~~~~~~~-~~~~~~~~~   68 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVM------VIYKDTQRP---------SGIPQRF-SSSTSGTTV   68 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEE------EEBTTTBCC---------TTSCTTE-EEEEETTEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEE------Eeeeecccc---------cccCCcE-EECCCCCcc
Confidence            45899999999999999776666679999842  22211      000000000         0000000 001122356


Q ss_pred             ceEecCcccCCeEEEEEEEEc
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      .|.|.+++++|++.|.|.+..
T Consensus        69 ~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          69 TLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             EEEETTCCGGGCEEEEEEEEE
T ss_pred             CceEcCcchhHCceEEeeecC
Confidence            899999999999999998763

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.80  E-value=4.7e-05  Score=56.39  Aligned_cols=71  Identities=10%  Similarity=0.106  Sum_probs=53.7

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee--e----------cccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT--I----------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~--~----------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      |..+.+.+|++++|.|.........+.|++-  +..  +          ....++.....+....|.|.+++++|++.|.
T Consensus         7 P~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Yy   86 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYY   86 (106)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEE
Confidence            4567889999999999987666567899982  111  1          0124566666667789999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+..
T Consensus        87 Ca~~~   91 (106)
T d1a0ql1          87 CLQYY   91 (106)
T ss_dssp             EEECS
T ss_pred             EEEeC
Confidence            98754

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.79  E-value=4.1e-05  Score=56.58  Aligned_cols=88  Identities=14%  Similarity=0.128  Sum_probs=50.6

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--Ceeeeeccc-eEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPI-WEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~-Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      +++.-.-.|++|++|+|+|.++|....  .+.|+|.  |+.|.--|. |..-..+.....+++++.-.+           
T Consensus         4 L~esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D-----------   72 (120)
T d1dn0b1           4 LQQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVD-----------   72 (120)
T ss_dssp             EEEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEE-----------
T ss_pred             EEeECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEecc-----------
Confidence            334456678999999999999997765  3789985  333321000 000000001112222221100           


Q ss_pred             cCCCCCceEecCcccCCeEEEEEE
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVL  104 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~  104 (616)
                      .......|.|.+|+++|.+.|.|.
T Consensus        73 ~s~nt~~L~i~~l~~eDtA~YYCA   96 (120)
T d1dn0b1          73 TSKNQFSLKLSSVTAADTAVYYCA   96 (120)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CchheecccccccccccccEEEEE
Confidence            123345699999999999999994

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.79  E-value=2.7e-05  Score=57.69  Aligned_cols=83  Identities=8%  Similarity=0.193  Sum_probs=51.9

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccc-eeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPI-WEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~-w~~~~~~~~   83 (616)
                      +.|..+.|.+|++|+|.|...+.....+.|||.  |+....      ......         ..+.+.+. +...  ...
T Consensus         6 QsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~------~~~~~~---------~~~~~~~~rfs~~--~~~   68 (106)
T d1i8ka_           6 QSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKF------LISEGN---------TLRPGVPSRFSSS--GTG   68 (106)
T ss_dssp             EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEE------EEETTT---------EECTTSCTTEEEE--EET
T ss_pred             eeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEE------EEeccC---------ccccCCCcceeEe--CCC
Confidence            458889999999999999987666667999974  433221      000000         00001111 1000  022


Q ss_pred             CCCceEecCcccCCeEEEEEEEE
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....|+|.+++++|++.|.|.+.
T Consensus        69 ~~~~L~I~~~~~~Dsa~YyCa~~   91 (106)
T d1i8ka_          69 TDFVFTIENTLSEDVGDYYCLQS   91 (106)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CeeeecccCCccccCEEEeEecC
Confidence            35679999999999999999865

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=3.9e-05  Score=56.92  Aligned_cols=81  Identities=10%  Similarity=0.052  Sum_probs=49.4

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeC--Ceeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      |..+.+.+|++|+|.|...+.-...+.|||.  |+.+.. -..+ ..  ...             +.+.-+... .....
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~-~~--~~~-------------~~~~~f~~~-~~~~~   69 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKA-SN--LAS-------------GVPARFSGS-GSGTD   69 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETT-TE--ECT-------------TCCTTEEEE-EETTE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEec-cc--ccC-------------CcCCceeee-cCCCE
Confidence            4579999999999999988766667999974  222211 0000 00  000             101000000 02234


Q ss_pred             CceEecCcccCCeEEEEEEEE
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ..|.|.+|+++|++.|.|.+.
T Consensus        70 ~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          70 FTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EEeEECCcChhhCCCcccccc
Confidence            689999999999999999654

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.78  E-value=5.6e-05  Score=57.61  Aligned_cols=85  Identities=13%  Similarity=0.132  Sum_probs=52.0

Q ss_pred             CCCCceEecCCCeEEEEEEEeeec--CCeeeeeeC--Ceeeee------ccceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEP--VPHVDWRAG--GNPLNL------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~--~~~l~~------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      +++..+.+.+|++|+|+|.++|..  ...+.|||.  |+.+..      .|.-    ....+.+++++..-         
T Consensus         6 Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~----~~~~~~~~~rf~~~---------   72 (123)
T d1hxmb1           6 QPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTV----RKESGIPSGKFEVD---------   72 (123)
T ss_dssp             CCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCE----EECTTCCTTSEEEE---------
T ss_pred             CCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeeccccccc----ccccccccceeEEe---------
Confidence            445678899999999999998864  346899984  332221      1110    01111222222210         


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                        .........|+|.+|.+.|++.|.|.+.
T Consensus        73 --~~~~~~~~~L~i~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          73 --RIPETSTSTLTIHNVEKQDIATYYCALW  100 (123)
T ss_dssp             --EETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             --eeccccceeecccccccccCcEEEEeee
Confidence              0001224569999999999999999876

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.76  E-value=5.7e-05  Score=55.52  Aligned_cols=90  Identities=11%  Similarity=0.130  Sum_probs=52.3

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeecc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.+.....+++|++|+|+|.++|....  .+.|+|.  |+.|.--|.....  ..+.....+++++.-.+          
T Consensus         3 L~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D----------   72 (117)
T d1um5h1           3 LQQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSD----------   72 (117)
T ss_dssp             EEECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEE----------
T ss_pred             EEeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEec----------
Confidence            445677889999999999999997664  4889985  3333210000000  00000011222221100          


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       .......|++.+|+++|...|.|...
T Consensus        73 -~s~~t~~L~m~sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          73 -KSSNTAYLELSSLTSEDSAVYYCARS   98 (117)
T ss_dssp             -TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             -cCceeEeecccccCCCcceEEEEeec
Confidence             02334568999999999999999754

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.76  E-value=1.7e-05  Score=58.91  Aligned_cols=81  Identities=11%  Similarity=0.038  Sum_probs=51.3

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCC--eeeee---ccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGG--NPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      +.|..+.+.+|++|+|.|...+.....+.|||..  +.+..   .+..     +..             |.+..... ..
T Consensus         6 Q~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~-----~~~-------------~~~~~~~~-~~   66 (108)
T d1jhll_           6 QSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGST-----LQS-------------GIPSRFSG-SG   66 (108)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTE-----ECT-------------TCCTTEEE-EE
T ss_pred             ccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeecc-----ccC-------------Cccccccc-cC
Confidence            4588999999999999999876666679999842  21110   1100     000             11110000 01


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEE
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ......|+|.+|+++|++.|.|.+.
T Consensus        67 ~~~~~~L~i~~l~~~Dsa~YyCA~~   91 (108)
T d1jhll_          67 SGTDFTLTISSLEPEDFAMYICQQH   91 (108)
T ss_dssp             SSSEEEEEECSCCTTCCSEEEEEEC
T ss_pred             CCCEEEeEeeeeEeccceEEEEeeC
Confidence            2234579999999999999999754

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.75  E-value=5.9e-05  Score=55.96  Aligned_cols=91  Identities=13%  Similarity=0.143  Sum_probs=52.3

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEe--ecCCCCCceeEeeeccCCccceeec
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCA--QTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a--~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      .+..+....+++|++|+|+|.++|....  .+.|+|.  |+.+.--|.+....  .+.....+++++.-           
T Consensus         3 ~L~qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis-----------   71 (120)
T d1pg7x1           3 QLQQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLT-----------   71 (120)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEE-----------
T ss_pred             eEeeECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceee-----------
Confidence            3445667789999999999999986543  5889985  44332100000000  00000011111110           


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      .........|+|.+|+++|...|.|...
T Consensus        72 ~d~s~n~v~L~i~~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          72 VDRSSTTAYIELVRLTSNDSAVYYCARE   99 (120)
T ss_dssp             EETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eccCcceEEccccccCCCcceEEEeeec
Confidence            0002234568999999999999999875

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.75  E-value=1.6e-05  Score=59.15  Aligned_cols=84  Identities=8%  Similarity=0.069  Sum_probs=51.5

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|+.|+|.|.........+.|||.  |+.+..-..+.+.  ...             +.+.-..... ...
T Consensus         6 QsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~--~~~-------------~~~~~f~~~~-~~~   69 (107)
T d3cx5k1           6 QTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSR--LHA-------------GVPSRFSGSG-SGT   69 (107)
T ss_dssp             EESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTE--ECT-------------TCCTTCCCEE-ETT
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecc--cCC-------------CcCCCEEEEc-cCC
Confidence            458889999999999999987777767999974  3322210000000  000             0000000000 123


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ...|.|.+++++|++.|.|.+.
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          70 DYSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             EEEEECSCCCSCCCSEEEEEEC
T ss_pred             EEEEEEeEeeecCCCcEEeeeC
Confidence            4689999999999999999764

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.74  E-value=4.6e-05  Score=57.18  Aligned_cols=83  Identities=8%  Similarity=0.114  Sum_probs=49.6

Q ss_pred             CCceEecCCCeEEEEEEEeeecC--CeeeeeeC--CeeeeeccceEEEeecC-CCCCceeEeeeccCCccceeeccccCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPV--PHVDWRAG--GNPLNLRPIWEKCAQTE-GDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~--p~v~W~~~--~~~l~~~G~Y~C~a~n~-~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      |..+.+.+|++|+|.|..++.-.  -.+.|||.  ++.+..    .....+. ....+++..           .......
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~----~~~~~~~~~~~~~~~~~-----------~~~~~~~   71 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPIT----VIYEDNQRPSGVPDRFA-----------GSIDRSS   71 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEE----EEBTTTBCCTTSCTTEE-----------EEEETTT
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEe----eeccccccCcccCCcee-----------EeecCCC
Confidence            67899999999999999876443  35999985  322221    0000000 000011111           0000123


Q ss_pred             CCCceEecCcccCCeEEEEEEEE
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....|.|.+|+++|++.|.|.+.
T Consensus        72 ~~~~L~i~~l~~~Dsa~YyCA~~   94 (111)
T d1cd0a_          72 NSASLTISGLKTEDEADYYCQSY   94 (111)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccccccccCCcccCcEEEEeec
Confidence            45689999999999999999875

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.3e-05  Score=55.21  Aligned_cols=30  Identities=27%  Similarity=0.551  Sum_probs=26.2

Q ss_pred             cCCCeEEEEEEEee-ecCCeeeeeeCCeeee
Q psy12426         15 SAGTTLKFDANIIG-EPVPHVDWRAGGNPLN   44 (616)
Q Consensus        15 ~~g~~v~l~C~~~g-~P~p~v~W~~~~~~l~   44 (616)
                      ..|+.++|.|.+.| .|.|.|+|++||+.+.
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~   44 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELN   44 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEEC
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEec
Confidence            36788999999886 7999999999998875

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.73  E-value=9.8e-05  Score=54.67  Aligned_cols=72  Identities=14%  Similarity=0.128  Sum_probs=55.0

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCceeEEEEC--Ceee------------cccCcEEEEecCCceEEEecCCCCCCcEEE
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y  287 (616)
                      .|..+.+.+|++++|.|...+.....+.|++-  +..+            ....++.....+....|.|.+++++|++.|
T Consensus         7 sP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1ospl1           7 SSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATY   86 (107)
T ss_dssp             CCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEE
T ss_pred             eCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcE
Confidence            35567889999999999987766667999982  2211            122466666667778999999999999999


Q ss_pred             EEEEEc
Q psy12426        288 TLAVKN  293 (616)
Q Consensus       288 ~c~a~n  293 (616)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1ospl1          87 FCQQYW   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEeecc
Confidence            998754

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.72  E-value=4.9e-05  Score=56.38  Aligned_cols=84  Identities=10%  Similarity=0.054  Sum_probs=51.8

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|++|+|.|.........+.|||.  ++.+..    .....+.           ...|.|.-+... ....
T Consensus         6 Q~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~----l~~~~~~-----------~~~~~~~rf~~~-~~~~   69 (107)
T d1d5il1           6 QSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKT----LIYRANR-----------LVDGVPSRFSGS-GSGQ   69 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEE----EEETTTE-----------ECTTSCTTEEEE-EETT
T ss_pred             eeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEE----EEEeccc-----------cccCcCCceeec-ccCC
Confidence            458889999999999999987777777999974  222211    0000000           000111100000 0223


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ...|.|.+++++|++.|.|.+.
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d1d5il1          70 DYSLTISSLEYEDMGIYYCLQY   91 (107)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEccccccCCcCCEEEEeeec
Confidence            4689999999999999999765

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=4.8e-05  Score=57.37  Aligned_cols=86  Identities=14%  Similarity=0.101  Sum_probs=50.6

Q ss_pred             CCCceEecCCCeEEEEEEEeee-cCCeeeeeeCC--eeeeeccceEEEeecC----CCCCceeEeeeccCCccceeeccc
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGE-PVPHVDWRAGG--NPLNLRPIWEKCAQTE----GDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~~--~~l~~~G~Y~C~a~n~----~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      .|.++++.+|++|+|.|...+. ....+.|||..  +.+..-..+. ...+.    .+....++..           .  
T Consensus         6 sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~-~~~~~~~~~~~~~~~rfs~-----------~--   71 (114)
T d1akjd_           6 SPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLY-LSQNKPKAAEGLDTQRFSG-----------K--   71 (114)
T ss_dssp             ECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEE-ESSSCCEECTTCCTTTEEE-----------E--
T ss_pred             CCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEe-cCCCeeEcCCCCCCcEEEE-----------E--
Confidence            4888999999999999997654 34569999843  1111000000 00000    0000111110           0  


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      .......|.|.+|++.|+|.|.|.+..
T Consensus        72 ~~~~~~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          72 RLGDTFVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             EETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCChhcEEccCCCCCCEEEeEeEcC
Confidence            012345799999999999999999873

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.71  E-value=5.4e-05  Score=56.28  Aligned_cols=81  Identities=9%  Similarity=0.109  Sum_probs=52.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--Ceeeee---ccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNL---RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~---~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      +.|..+.+.+|++|+|.|.........+.|||.  ++....   ...+     ...+.+..            ....  .
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~-----~~~~~~~~------------~~~~--~   66 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASN-----RYTGVPDR------------FTGS--G   66 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTE-----ECTTCCTT------------EEEE--E
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEeccc-----ccCCccce------------EEee--c
Confidence            558899999999999999988777778999984  322221   0000     00000000            0000  0


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEE
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ......|+|.+++++|++.|.|.+.
T Consensus        67 ~~~~~~L~I~~l~~~DSa~YyCa~~   91 (107)
T d1kcvl1          67 SATDFTLTISSVQADDDADYYCGQS   91 (107)
T ss_dssp             ETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             cCCeeecEEHhheecCCceEEEEec
Confidence            2235689999999999999999864

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.71  E-value=6.5e-05  Score=55.66  Aligned_cols=83  Identities=10%  Similarity=0.003  Sum_probs=51.9

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--Ceeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      +.|..+.+.+|++|+|.|.....-...+.|||.  |+.+.. ...+   ..+..             +.+..+.... ..
T Consensus         6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~---~~~~~-------------~~~~rfs~~~-~~   68 (107)
T d1mexl1           6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSA---SYRYS-------------GVPDRFTGSG-SG   68 (107)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETT---TEECT-------------TSCTTEEEEE-ET
T ss_pred             cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEec---ccccc-------------ccCCCeeecC-CC
Confidence            568889999999999999977666667999974  322221 0000   00000             0111111111 22


Q ss_pred             CCCceEecCcccCCeEEEEEEEE
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....|.|.+++++|++.|.|.+.
T Consensus        69 ~~~~L~I~~~~~~DsA~YyCa~~   91 (107)
T d1mexl1          69 TDFTLTINNVQSEDLAEYFCQQY   91 (107)
T ss_dssp             TEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CeeeeeechhheecceeEEEeEC
Confidence            34679999999999999999864

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.71  E-value=7.4e-05  Score=55.86  Aligned_cols=84  Identities=7%  Similarity=-0.007  Sum_probs=49.6

Q ss_pred             CCceEecCCCeEEEEEEEee-ecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIG-EPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDT   85 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g-~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~   85 (616)
                      |.++.|.+|++|+|.|...+ .....+.|||.  |+.+..      .+........         +....... ......
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~------i~~~~~~~~~---------~~~~~~~~-~~~~~~   68 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQY------IIHGLKNNET---------NEMASLII-TEDRKS   68 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEE------EEEESSSCEE---------CSSCEEEE-CTTCSE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEE------eeeeeceecc---------cccceeee-cccCCe
Confidence            56899999999999998654 34556899984  322221      0000000000         00000000 012235


Q ss_pred             CceEecCcccCCeEEEEEEEEcC
Q psy12426         86 PKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        86 ~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                      ..|.|.+++++|++.|.|.+...
T Consensus        69 ~~L~I~~~~~~Dsa~YyCa~~~~   91 (110)
T d2esvd1          69 STLILPHATLRDTAVYYCIVVRS   91 (110)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEES
T ss_pred             eeehhcccccCCceEEEEEEeCC
Confidence            67999999999999999998743

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.71  E-value=4.9e-05  Score=56.23  Aligned_cols=71  Identities=11%  Similarity=0.086  Sum_probs=53.6

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Ceee------------cccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      |..+.+.+|++++|.|.........+.|++.  +..+            ....++.....+....|.|.+++++|++.|.
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYY   87 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEe
Confidence            4567788999999999887666667899862  2221            1234566665666789999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+.+
T Consensus        88 Ca~~~   92 (106)
T d1i8ka_          88 CLQSF   92 (106)
T ss_dssp             EEECS
T ss_pred             EecCc
Confidence            98754

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.71  E-value=4.8e-05  Score=56.72  Aligned_cols=82  Identities=11%  Similarity=0.080  Sum_probs=50.4

Q ss_pred             CCCCceEecCCCeEEEEEEEeee-cCCeeeeeeC--Ceeeee--ccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGE-PVPHVDWRAG--GNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~-P~p~v~W~~~--~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      +.|..+.+.+|++|+|.|...+. ....+.|||.  |+.+..  .+..     +.......+...             ..
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~-----~~~~~~~~~~s~-------------~~   67 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGAS-----SRPSGVADRFSG-------------SG   67 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTT-----BCCTTSCTTEEE-------------EE
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeec-----ccccCCccceee-------------ec
Confidence            56899999999999999987644 3456899985  332221  0000     000000001110             00


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEE
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ......|+|.+++++|++.|.|.+.
T Consensus        68 ~~~~~~L~I~~~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          68 SGTDFTLTISRLEPEDFAVYYCQQY   92 (108)
T ss_dssp             ETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             CCCEEEEEehHheecccEEEeeecC
Confidence            2234579999999999999999864

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.70  E-value=3.4e-05  Score=57.33  Aligned_cols=91  Identities=14%  Similarity=0.192  Sum_probs=52.2

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEe--ecCCCCCceeEeeeccCCccceeec
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCA--QTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a--~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      .+..+....+++|++|+|+|.++|....  .+.|+|.  |+.+.--+.+.+..  .+...+.+++++.-.+         
T Consensus         3 ~L~esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d---------   73 (119)
T d1qnzh_           3 QLQQSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVE---------   73 (119)
T ss_dssp             EEEEECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEE---------
T ss_pred             ceEeECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecc---------
Confidence            3444556689999999999999986543  4889985  44333211111100  0000111222221000         


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                        .......|+|.+|+++|.+.|.|...
T Consensus        74 --~s~~~~~L~i~~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          74 --KSSSTVYLEFSRLTSDDSAVYYCAIH   99 (119)
T ss_dssp             --TTTTEEEEEEEEECGGGCEEEEEEEC
T ss_pred             --cccceeeeeecccCccceeEEEEEEe
Confidence              02233468999999999999999643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.70  E-value=7.2e-05  Score=56.18  Aligned_cols=75  Identities=9%  Similarity=0.159  Sum_probs=52.0

Q ss_pred             CCCCceEecCCCeEEEEEEEeee--cCCeeeeeeC--Ceee----eeccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGE--PVPHVDWRAG--GNPL----NLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~--P~p~v~W~~~--~~~l----~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      +.|..+.+.+|++|+|+|..++.  +...+.|||.  ++..    ...|++.-....                       
T Consensus         5 Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~-----------------------   61 (113)
T d1vesa_           5 QTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNK-----------------------   61 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEET-----------------------
T ss_pred             eeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeEC-----------------------
Confidence            45889999999999999998754  3456999974  2211    114443222111                       


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                         ......|+|.+|+++|++.|.|.+..
T Consensus        62 ---~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          62 ---GSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             ---TTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ---CCCceeeeecccccCCcceEeeeeec
Confidence               11234799999999999999999874

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.70  E-value=0.00014  Score=54.73  Aligned_cols=75  Identities=20%  Similarity=0.367  Sum_probs=53.5

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---ec---------ccCcEE--EEecCCceEEEecCCCCCCcE
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---II---------SKDRFK--IVNDDKSTKLKVFDSKRGDSG  285 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~~---------~~~~~~--~~~~~~~~~l~i~~l~~~~~g  285 (616)
                      .|..+.+.+|+.++|.|...+.....+.|+|-  +..   +.         ...++.  .........|.|.+++.+|+|
T Consensus         6 ~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg   85 (113)
T d2bnqd1           6 IPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSA   85 (113)
T ss_dssp             SSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             eCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCc
Confidence            34667889999999999998776678999982  221   10         112222  222355679999999999999


Q ss_pred             EEEEEEEcCCC
Q psy12426        286 IYTLAVKNSWG  296 (616)
Q Consensus       286 ~y~c~a~n~~g  296 (616)
                      .|.|.+....+
T Consensus        86 ~YyCa~~~~~~   96 (113)
T d2bnqd1          86 TYLCAVRPTSG   96 (113)
T ss_dssp             EEEEEEEESSS
T ss_pred             EEeEeEecCCC
Confidence            99999976443

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.69  E-value=5.3e-05  Score=55.54  Aligned_cols=87  Identities=21%  Similarity=0.204  Sum_probs=51.5

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeecCCC------CCceeEeeeccCCcc
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQTEGD------TPKGKVLDLIEGNHP   73 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n~~~------~~~~~v~~~~~~~~p   73 (616)
                      |.+.......+++|++|+|+|.++|....  .+.|+|.  |+-|.--|.+    ....+      +.+++++.-.+    
T Consensus         2 v~L~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i----~~~~~~~~ya~~~kgRftisrD----   73 (118)
T d1nlbh1           2 IQLVQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWV----NTETGEPTYADDFKGRFAFSLE----   73 (118)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEE----CTTTCCEEECGGGSSSEEEEEE----
T ss_pred             CcEEeECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeec----CcccccchhhhheeeeeEEEec----
Confidence            33445667789999999999999986654  4889984  3333210000    00000      01222221100    


Q ss_pred             ceeeccccCCCCCceEecCcccCCeEEEEEEE
Q psy12426         74 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  105 (616)
Q Consensus        74 ~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a  105 (616)
                             .......|++.+|+.+|.+.|.|..
T Consensus        74 -------~s~~tvyL~~~~L~~eDtAvYYCAr   98 (118)
T d1nlbh1          74 -------TSASTAYLQINSLKNEDTATYFCAR   98 (118)
T ss_dssp             -------GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             -------CCceeEEeeeeecccCcceEEEEee
Confidence                   0223457899999999999999953

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.69  E-value=4.7e-05  Score=56.50  Aligned_cols=84  Identities=11%  Similarity=0.124  Sum_probs=51.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCC--eeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGG--NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|++|+|+|.....-.+.+.|||..  +.+..      .......         .+.+.+.-... .....
T Consensus         6 Q~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~------l~~~~~~---------~~~~~~~~~~~-~~~~~   69 (107)
T d1tjgl1           6 QSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQL------LIYDASS---------LESGVPSRFSG-SGSGT   69 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEE------EEETTTE---------ECTTSCTTEEE-EEETT
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceE------EEeeccc---------ccCCCCcceEE-eccCC
Confidence            3488999999999999999876556789999842  22211      0000000         00011110000 00223


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ...|+|.+|+++|++.|.|.+.
T Consensus        70 ~~~L~I~~l~~~DsA~YyCa~~   91 (107)
T d1tjgl1          70 EFTLTISTLRPEDFATYYCQQL   91 (107)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEC
T ss_pred             EEEEEeccceeCcCceEEEEEC
Confidence            5689999999999999999654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.68  E-value=5.4e-05  Score=54.66  Aligned_cols=91  Identities=10%  Similarity=0.056  Sum_probs=53.2

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeec----CCCCCceeEeeeccCCcccee
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQT----EGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n----~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      .+.+.....|++|++|+|+|.++|....  .+.|+|.  |+-+.--|.......+    ...+.+++++.-.+       
T Consensus         3 ~L~eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D-------   75 (109)
T d2ck0h1           3 QLQESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRD-------   75 (109)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEE-------
T ss_pred             CEEeECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccc-------
Confidence            3445667789999999999999986654  4889984  3333211110000000    00111222221100       


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                          .......|.+.+|+++|++.|.|...
T Consensus        76 ----~s~~t~~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          76 ----DSQSMLYLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             ----TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ----cccceeEecccCCCHhHCEEEEEEEc
Confidence                02334578999999999999999854

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.67  E-value=7.7e-05  Score=54.62  Aligned_cols=91  Identities=12%  Similarity=0.094  Sum_probs=52.5

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeec
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      .+.+.....+++|++|+|+|.++|....  .+.|+|.  |+-|.--|.....  ..+...+.+++++.-.+         
T Consensus         3 qL~esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D---------   73 (117)
T d1jnhb1           3 QLQQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTAD---------   73 (117)
T ss_dssp             EEEECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEE---------
T ss_pred             EEeeECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEecc---------
Confidence            3445667788999999999999997665  4789984  3333210000000  00000111222221000         


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                        .......|.+.+|+++|.+.|.|...
T Consensus        74 --~s~~t~yLq~~~L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          74 --RSSSIVYLQLNSLTSEDSAVYSCSRG   99 (117)
T ss_dssp             --TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             --CccceeeecccccCCCcceEEEEeec
Confidence              02334578999999999999999653

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.67  E-value=7.4e-05  Score=54.45  Aligned_cols=92  Identities=13%  Similarity=0.134  Sum_probs=53.7

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +.+..+....+++|++|+|+|.++|....  .+.|+|.  |+.|.--|...+.  ..+...+.+++++.-          
T Consensus         2 VqL~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS----------   71 (116)
T d1mjuh1           2 VQLQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLT----------   71 (116)
T ss_dssp             CEEECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEE----------
T ss_pred             cEEeeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEe----------
Confidence            44566788899999999999999997664  4789984  4333210000000  000000011222210          


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       .........|.+.+|+++|.+.|.|...
T Consensus        72 -~D~s~~tvyL~~~sL~~eDtAvYYCAr~   99 (116)
T d1mjuh1          72 -VDTSSSTAYMQLSSLTSDDSAVYYCANK   99 (116)
T ss_dssp             -EETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             -cccccceeEecccccCCCCceEEEEccc
Confidence             0012334578999999999999999753

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.6e-05  Score=61.53  Aligned_cols=92  Identities=13%  Similarity=0.078  Sum_probs=51.7

Q ss_pred             CCceEecCCCeEEEEEEEeeecCC----eeeeeeCCeeeee--ccceEEEeecC----CCCCceeEeeeccCCccceeec
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVP----HVDWRAGGNPLNL--RPIWEKCAQTE----GDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p----~v~W~~~~~~l~~--~G~Y~C~a~n~----~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      .+.+.+.+|++|.|.|...+.+.+    .|.|++....-..  ...+.......    .....+++.-.         . 
T Consensus        11 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---------~-   80 (124)
T d1eaja_          11 EEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFT---------S-   80 (124)
T ss_dssp             EEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEEC---------C-
T ss_pred             CceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEE---------c-
Confidence            345789999999999997755443    4889975332110  00111110000    00011111110         0 


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      ........+|.|.+++.+|+|.|.|.+.+..|
T Consensus        81 ~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~  112 (124)
T d1eaja_          81 NDLKSGDASINVTNLQLSDIGTYQCKVKKAPG  112 (124)
T ss_dssp             SCGGGTBCCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             cCCCCCEEEEEEcccEEccCEEEEEEEEECCC
Confidence            00112346899999999999999999987655

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.66  E-value=4.4e-05  Score=57.32  Aligned_cols=87  Identities=10%  Similarity=0.127  Sum_probs=51.4

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|++|+|+|...+.-...+.|||.  |+....   +.-...+........           ..........
T Consensus         4 Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~---l~~~~~~~~~~~~~~-----------~~~~~~~~~~   69 (110)
T d1u3ha1           4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPAL---LISILSVSDKKEDGR-----------FTIFFNKREK   69 (110)
T ss_dssp             CSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEE---EEEEETTCSEEEETT-----------EEEEEETGGG
T ss_pred             ecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceee---eeeeccccccccccc-----------eeEEECCCCC
Confidence            458889999999999999976555557999985  332221   000000000000000           0000001223


Q ss_pred             CCceEecCcccCCeEEEEEEEEc
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ...|.|.+++++|++.|.|.+..
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          70 KLSLHIADSQPGDSATYFCAASA   92 (110)
T ss_dssp             EEEEEESSCCTTSCSEEEECCEE
T ss_pred             eeEeEeccCCCCCceeEeeeecC
Confidence            45799999999999999999763

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=5.9e-05  Score=55.37  Aligned_cols=91  Identities=12%  Similarity=0.142  Sum_probs=52.4

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeec--CCCCCceeEeeeccCCccceee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQT--EGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n--~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      |.+..+....+++|++|+|+|.++|...-  .+.|+|.  |+.|.--|.....-.+  ...+-+++++.-.         
T Consensus         2 v~L~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~---------   72 (118)
T d2jelh1           2 VQLAQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTV---------   72 (118)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEE---------
T ss_pred             CceEeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEec---------
Confidence            44556778889999999999999997764  4889984  3333210000000000  0000111211100         


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLA  105 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a  105 (616)
                        ........|.+.+|+++|.+.|.|..
T Consensus        73 --D~s~~t~~L~~~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          73 --DKSSSTAYMELARLTSEDSAIYYCAR   98 (118)
T ss_dssp             --EGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             --ccCcceEeecccccccCcceeeeEEE
Confidence              00223457899999999999999954

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=5.4e-05  Score=58.41  Aligned_cols=84  Identities=20%  Similarity=0.256  Sum_probs=56.6

Q ss_pred             cceEEEcCCeEEEEEEEeeecC----ceeEEEECCeee----------------c---c--cCcEEEEec---CCceEEE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPI----PTKEWLCNDITI----------------I---S--KDRFKIVND---DKSTKLK  275 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~----~~~~W~~~~~~~----------------~---~--~~~~~~~~~---~~~~~l~  275 (616)
                      ..+.+..|+++.|.|.+...+.    ..+.|++.....                .   .  ..|..+...   .+..+|+
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            3477889999999999875543    358898631110                0   0  122333211   2245899


Q ss_pred             ecCCCCCCcEEEEEEEEcCCCCceeeEEEEEe
Q psy12426        276 VFDSKRGDSGIYTLAVKNSWGTDKGTAKVTVL  307 (616)
Q Consensus       276 i~~l~~~~~g~y~c~a~n~~g~~~~~~~l~v~  307 (616)
                      |.+++..|+|.|.|.+.+..|.......|.|.
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            99999999999999999887766666666653

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.65  E-value=7.8e-05  Score=55.39  Aligned_cols=84  Identities=11%  Similarity=0.087  Sum_probs=51.3

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|+.|+|.|.........+.|||.  ++....      ......         ....+.+.-+... ....
T Consensus         6 QsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~------li~~~~---------~~~~~~~~~fs~~-~~~~   69 (109)
T d1mqkl_           6 QTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQF------LVYNAK---------TLGEGVPSRFSGS-GSGT   69 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEE------EEETTT---------EECTTCCTTEEEE-EETT
T ss_pred             CcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeE------EEEeec---------cccCCcCCCEEEe-ccCC
Confidence            448899999999999999987666667999983  221110      000000         0000111100000 0233


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ...|.|.+++++|++.|.|.+.
T Consensus        70 ~~~L~I~~~~~~DSa~YyCA~~   91 (109)
T d1mqkl_          70 QFSLKINSLLPEDFGSYYCQHH   91 (109)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEEEccccccCCeeEEEeee
Confidence            5679999999999999999875

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.65  E-value=7.4e-05  Score=54.92  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=51.2

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecC--CeeeeeeC--CeeeeeccceEEEeecCCCC------CceeEeeeccCCccc
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPV--PHVDWRAG--GNPLNLRPIWEKCAQTEGDT------PKGKVLDLIEGNHPI   74 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~--p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~------~~~~v~~~~~~~~p~   74 (616)
                      .+.......+++|++|+|+|.++|.-.  -.+.|+|.  |+.+.--|.    .....+.      .+++++.-.      
T Consensus         3 ~L~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~----i~~~~~~~~y~~~~~gRftis~------   72 (115)
T d1f3dh1           3 QLQQSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGY----IVPYSGGTTFNQKFKGKATLTV------   72 (115)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEE----ECTTTCCEEECGGGBTTEEEEE------
T ss_pred             eEEeECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeec----cCCCCCcccccceeeEEEEEee------
Confidence            344566678999999999999998644  35889985  443331110    0000000      112222100      


Q ss_pred             eeeccccCCCCCceEecCcccCCeEEEEEEE
Q psy12426         75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  105 (616)
Q Consensus        75 w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a  105 (616)
                           ........|+|.+|+.+|...|.|..
T Consensus        73 -----D~s~~t~~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          73 -----DKSSSTAFMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             -----ETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             -----ccCceeeEeeeeecCcCCcEEEEEec
Confidence                 00223356999999999999999964

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.64  E-value=8.5e-05  Score=54.75  Aligned_cols=91  Identities=16%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeec
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      .+.+...-.+++|++|+|+|.++|....  .+.|+|.  |+.|.--|...+.  ..+...+.+++++.-.+         
T Consensus         3 qL~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD---------   73 (119)
T d1rz7h1           3 QLVQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITAD---------   73 (119)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEE---------
T ss_pred             EEeeECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecc---------
Confidence            3445667788999999999999997654  4889984  3333210000000  00000112222221100         


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                        .......|.+.+|+++|.+.|.|...
T Consensus        74 --~s~nt~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          74 --TSTDTGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             --TTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             --cCceEEEeeeeccCcccceEEEEeec
Confidence              12334578999999999999999754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.64  E-value=0.00013  Score=54.21  Aligned_cols=72  Identities=11%  Similarity=0.134  Sum_probs=54.9

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---e---------cccCcEEEEecCCceEEEecCCCCCCcEEE
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y  287 (616)
                      .|..+.+.+|++++|.|.........+.|++-  +..   +         ....++..........|.|.+++++|++.|
T Consensus         7 sP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Y   86 (107)
T d1kcvl1           7 SPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADY   86 (107)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceE
Confidence            34567899999999999988776667999973  211   1         023456666666778999999999999999


Q ss_pred             EEEEEc
Q psy12426        288 TLAVKN  293 (616)
Q Consensus       288 ~c~a~n  293 (616)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1kcvl1          87 YCGQSY   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            998754

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.63  E-value=9.6e-05  Score=54.82  Aligned_cols=71  Identities=14%  Similarity=0.157  Sum_probs=54.2

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Ceee------------cccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      |..+.+.+|++++|.|.........+.|++.  +..+            ....++.....+....|.|.+++++|++.|.
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEE
Confidence            4567899999999999987666667999973  2211            1224666666677789999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+.+
T Consensus        88 Ca~~~   92 (107)
T d1j1pl_          88 CQQAN   92 (107)
T ss_dssp             EEECS
T ss_pred             EEcCC
Confidence            97654

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.62  E-value=0.00012  Score=53.96  Aligned_cols=89  Identities=13%  Similarity=0.141  Sum_probs=50.3

Q ss_pred             CCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceE-EEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWE-KCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~-C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      --.-.|++|++|+|+|.++|....  .+.|+|.  |+.|.--+.+. =-..+...+.+++++.-.+           ...
T Consensus         6 sg~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D-----------~s~   74 (119)
T d1kxvc_           6 SGGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQG-----------NAK   74 (119)
T ss_dssp             ECCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEEC-----------SST
T ss_pred             ECCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecc-----------cCC
Confidence            345678999999999999997654  4789985  33332100000 0000000001122221000           022


Q ss_pred             CCCceEecCcccCCeEEEEEEEEcC
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                      ....|.|.+|+++|+..|.|.+...
T Consensus        75 ~~~~L~i~~L~~eDtA~YYCAr~~~   99 (119)
T d1kxvc_          75 NTAYLQMDSLKPDDTAMYYCKPSLR   99 (119)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEES
T ss_pred             cceecccccCCcCCcceEeeeeccc
Confidence            3457999999999999999976643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.62  E-value=9e-05  Score=54.19  Aligned_cols=85  Identities=12%  Similarity=0.104  Sum_probs=52.7

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeec--C------CCCCceeEeeeccCCc
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQT--E------GDTPKGKVLDLIEGNH   72 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n--~------~~~~~~~v~~~~~~~~   72 (616)
                      ++...-...|++|++|+|+|.++|....  .+.|+|.  |+.|.      +.+.-  .      ..+-+++++.-.+   
T Consensus         3 ~L~esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkgle------wvg~i~~~~~~~~ya~s~kgR~tiSrD---   73 (117)
T d1jpth1           3 QLVESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLE------WVGLIDPEQGNTIYDPKFQDRATISAD---   73 (117)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEE------EEEEECTTTCCEEECTTTTTTEEEEEE---
T ss_pred             eEeeECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceE------eeeecccccccccccccceeeEEEEec---
Confidence            3444567789999999999999997754  4889985  33332      11110  0      0112222221100   


Q ss_pred             cceeeccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         73 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        73 p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                              .......|.+.+|+++|.+.|.|...
T Consensus        74 --------~s~nt~yL~m~~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          74 --------NSKNTAYLQMNSLRAEDTAVYYCARD   99 (117)
T ss_dssp             --------GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             --------cccceEEecccccCCCCceEEEEeec
Confidence                    02334578999999999999999754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.62  E-value=0.00012  Score=54.78  Aligned_cols=81  Identities=14%  Similarity=0.145  Sum_probs=50.5

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--Ceeeee------ccceEEEeecCCCCCceeEeeeccCCccceeec
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNL------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      +.|..+.+.+|++|+|+|...+ ....+.|||.  |+.+..      .+.....     +.+..            +.. 
T Consensus         6 Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~-----~~~~~------------~~~-   66 (110)
T d2aq2a1           6 QSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKG-----DIPDG------------YEA-   66 (110)
T ss_dssp             EECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEEC-----SCCTT------------CEE-
T ss_pred             EeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccC-----CCCCC------------EEE-
Confidence            4588999999999999998764 3567999984  332221      1111000     00000            000 


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      .........|+|.+++++|++.|.|.+.
T Consensus        67 ~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   94 (110)
T d2aq2a1          67 SRPSQEQFSLILESATPSQTSVYFCASG   94 (110)
T ss_dssp             EEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             EeccCCEEEEEECCCCHhhCEEEEEeeC
Confidence            0012234678999999999999999876

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.62  E-value=8.8e-05  Score=54.75  Aligned_cols=71  Identities=18%  Similarity=0.127  Sum_probs=52.9

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEE--CCeee------------cccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLC--NDITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      |..+.+.+|++++|.|.........+.|+|  .+..+            ....++.....+....|.|.+++++|++.|.
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   87 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEE
Confidence            456778899999999998776666799997  23221            0123455555556779999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+.+
T Consensus        88 Ca~~~   92 (107)
T d1c5cl1          88 CLQYA   92 (107)
T ss_dssp             EEECS
T ss_pred             EecCc
Confidence            98754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=9.2e-05  Score=54.13  Aligned_cols=91  Identities=14%  Similarity=0.085  Sum_probs=53.1

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE-eecCCCCCceeEeeeccCCccceeecc
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC-AQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~-a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      .+++.....|++|++|+|+|.++|....  .+.|+|.  |+.|.--|.+.=. ..+...+.+++++.-.+          
T Consensus         3 ~L~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D----------   72 (117)
T d1c5db1           3 KLLESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRD----------   72 (117)
T ss_dssp             CEEEECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEE----------
T ss_pred             eEeeECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecc----------
Confidence            3444566789999999999999997764  4889985  4443310000000 00000112233331111          


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       .......|.+.+|.++|...|.|...
T Consensus        73 -~s~n~~~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          73 -TSKSQVFLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             -TTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             -cccceeeccccccccCcceEEEEecc
Confidence             12334578999999999999999653

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.61  E-value=0.00015  Score=53.46  Aligned_cols=90  Identities=13%  Similarity=0.103  Sum_probs=52.4

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeeccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      +.+....|++|++|+|+|.++|...-  .+.|+|.  |+.|.--|.+...  ..+...+.+++++.-.           .
T Consensus         6 ~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~-----------D   74 (122)
T d1vgeh1           6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTR-----------D   74 (122)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEE-----------E
T ss_pred             EecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEec-----------c
Confidence            34667789999999999999997654  4889984  3333211110000  0000001122222100           0


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      .......|.+.+|+++|.+.|.|....
T Consensus        75 ~s~ntvyL~~~~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          75 TSATTAYMGLSSLRPEDTAVYYCARDP  101 (122)
T ss_dssp             TTTTEEEEEECSCCGGGCEEEEEEEET
T ss_pred             CCcceeeecccccCCCcceEEEEeecC
Confidence            023345689999999999999998753

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.61  E-value=8.7e-05  Score=55.30  Aligned_cols=84  Identities=10%  Similarity=0.107  Sum_probs=50.9

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|+.|+|.|...+.-...+.|||.  |+....-..+...               .+.+.+.-+... ....
T Consensus         8 QsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~---------------~~~~~~~~fs~~-~~~~   71 (109)
T d1bwwa_           8 QSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASN---------------LQAGVPSRFSGS-GSGT   71 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTE---------------ECTTCCTTEEEE-EETT
T ss_pred             eeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEeccc---------------CCCCCCCCEEee-CCCC
Confidence            447889999999999999987766667999984  2222110000000               000111100000 0223


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ...|+|.+|+++|++.|.|.+.
T Consensus        72 ~~~L~I~~l~~~Dsa~YyCA~~   93 (109)
T d1bwwa_          72 DYTFTISSLQPEDIATYYCQQY   93 (109)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEC
T ss_pred             EeEEEEeeceeCcCceEEEeec
Confidence            4579999999999999999865

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.60  E-value=8.3e-05  Score=55.24  Aligned_cols=91  Identities=12%  Similarity=0.118  Sum_probs=52.1

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeec
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      .+.......+++|++|+|.|.++|...-  .+.|+|.  |+.+.--|.+.+.  ..+...+.+++++.-.          
T Consensus         3 qL~esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~----------   72 (121)
T d1j05b_           3 QLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITA----------   72 (121)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEE----------
T ss_pred             eEeeECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEe----------
Confidence            4455677889999999999999986543  5889985  3333210100000  0000000112222100          


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       ........|.|.+|+++|.+.|.|...
T Consensus        73 -D~s~~t~~L~i~~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          73 -DTSSNTAYLQLTSLTSEDTAVYYCAPF   99 (121)
T ss_dssp             -EGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             -ecCCceeeecccccCcCcceEEEeEee
Confidence             002234569999999999999999764

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.59  E-value=0.00017  Score=54.16  Aligned_cols=86  Identities=10%  Similarity=0.088  Sum_probs=50.9

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|+.|+|.|...+. ...+.|||.  ++.+..  .+..  .+. ....         +.+. .........
T Consensus         6 Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~--l~~~--~~~-~~~~---------~~~~-~~~~~~~~~   69 (113)
T d1h5ba_           6 QSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLIS--LFYL--ASG-TKEN---------GRLK-SAFDSERAR   69 (113)
T ss_dssp             EECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEE--EEEE--SSS-EEEE---------TTEE-EECCSSSSS
T ss_pred             ECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEE--EEEe--eee-eccc---------cccc-eEEeecCCc
Confidence            45889999999999999997653 457999993  222221  0000  000 0000         0000 000011223


Q ss_pred             CCceEecCcccCCeEEEEEEEEcC
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                      ...|+|.+++++|++.|.|.+...
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~~   93 (113)
T d1h5ba_          70 YSTLHIRDAQLEDSGTYFCAAEAS   93 (113)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECS
T ss_pred             eeEEEECCCCHhHCEEEEEEecCC
Confidence            347999999999999999998743

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.59  E-value=0.00011  Score=54.22  Aligned_cols=73  Identities=11%  Similarity=0.080  Sum_probs=55.1

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---e---------cccCcEEEEecCCceEEEecCCCCCCcEE
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGI  286 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~  286 (616)
                      ..|..+.+.+|++++|.|.........+.|++-  +..   +         ....++.....+....|.|.+++++|++.
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFAT   84 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCc
Confidence            335668899999999999987766667899873  211   1         01246666666677899999999999999


Q ss_pred             EEEEEEc
Q psy12426        287 YTLAVKN  293 (616)
Q Consensus       287 y~c~a~n  293 (616)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1op3k1          85 YHCQHYA   91 (106)
T ss_dssp             EEEEEEC
T ss_pred             EeeeeCC
Confidence            9998764

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.58  E-value=0.00014  Score=52.36  Aligned_cols=65  Identities=6%  Similarity=0.018  Sum_probs=44.1

Q ss_pred             CCeEEEEEEEeeecCCeeeeeeCC--eeeee-----------ccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426         17 GTTLKFDANIIGEPVPHVDWRAGG--NPLNL-----------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus        17 g~~v~l~C~~~g~P~p~v~W~~~~--~~l~~-----------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      |++|+|.|.........+.|||..  +....           .|+|.-.                          .....
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~--------------------------~~~~~   54 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQ--------------------------LNKAS   54 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEE--------------------------EETTT
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEE--------------------------ecCCC
Confidence            899999999887777789999832  21110           2222111                          01122


Q ss_pred             CCCceEecCcccCCeEEEEEEEEc
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ...+|.|.+++++|++.|.|.+..
T Consensus        55 ~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1          55 QYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CEEeEEeeccccCcCccceeeEec
Confidence            346799999999999999998763

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=97.58  E-value=9.5e-05  Score=54.77  Aligned_cols=71  Identities=11%  Similarity=0.122  Sum_probs=53.5

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---e---------cccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      |..+.+.+|++++|.|.........+.|++-  +..   +         ....++.....+....|+|.+++++|++.|.
T Consensus         8 P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Yy   87 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEE
Confidence            4667889999999999987666678899873  211   1         1224556555666789999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1tjgl1          88 CQQLH   92 (107)
T ss_dssp             EEECS
T ss_pred             EEECc
Confidence            97654

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.58  E-value=0.00016  Score=54.07  Aligned_cols=83  Identities=8%  Similarity=0.105  Sum_probs=49.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeeec-----CCeeeeeeCC--eeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEP-----VPHVDWRAGG--NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P-----~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.|..+.+.+|++|+|+|..++.-     ...+.|||..  +.... -.|    .+..          .+.+.+.-.. .
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~-liy----~~~~----------~~~~~~~r~~-~   69 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQL-LIY----RMSN----------LASGVPDRFS-G   69 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEE-EEE----TTTE----------ECTTSCTTEE-E
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEE-EEE----eCCc----------ccCCCCCcEE-e
Confidence            568899999999999999976632     3468999753  32221 000    0000          0001111000 0


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLA  105 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a  105 (616)
                      ........|+|.+|+++|++.|.|..
T Consensus        70 ~~s~~~~~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          70 SGSGTAFTLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             EECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             ecCCCEEEEEECCccccCCceEEEEe
Confidence            01233567999999999999999953

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.58  E-value=0.00015  Score=54.24  Aligned_cols=83  Identities=8%  Similarity=0.103  Sum_probs=49.1

Q ss_pred             CCceEecCCCeEEEEEEEeee---cCCeeeeeeCC--eeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGE---PVPHVDWRAGG--NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~---P~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      |..+.+.+|++|+|.|...+.   ....+.|||..  +.+..      .......         ...+........ ...
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~------l~~~~~~---------~~~~~~~~~~~~-~~~   70 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKL------LTYEVNK---------RPSGVSDRFSGS-KSG   70 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEE------EEBTTTB---------CCTTSCTTEEEE-EET
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeeccccee------eeeeecc---------ccCCCcccEEEE-CCC
Confidence            778999999999999997653   23458999842  22211      0000000         000000000000 022


Q ss_pred             CCCceEecCcccCCeEEEEEEEEc
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ....|.|.+|+++|++.|.|.+.+
T Consensus        71 ~~~~L~I~~l~~~Dsa~YyCa~~~   94 (112)
T d1lgva1          71 NSASLTISGLQAEDEADYYCSSYD   94 (112)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CEeeEEeCcCccccCEEEEEeeec
Confidence            356799999999999999998864

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.58  E-value=7.6e-05  Score=54.64  Aligned_cols=90  Identities=11%  Similarity=0.085  Sum_probs=53.0

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCCe--eeeeeC--CeeeeeccceEEEe--ecCCCCCceeEeeeccCCccceeec
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVPH--VDWRAG--GNPLNLRPIWEKCA--QTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p~--v~W~~~--~~~l~~~G~Y~C~a--~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      .+.+.....|++|++|+|+|.++|...-.  +.|+|.  |+.|.--|. .+..  .+...+.+++++.-.+         
T Consensus         3 ~L~esG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~-i~~~~~~~y~~s~kgR~tis~D---------   72 (116)
T d1a2yb_           3 QLQESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGM-IWGDGNTDYNSALKSRLSISKD---------   72 (116)
T ss_dssp             EEEEECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEE-ECTTSCEEECTTTGGGEEEEEE---------
T ss_pred             CEEeECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeee-cCccccceecccccccceEecc---------
Confidence            34445667899999999999999977654  779985  343321010 0000  0000112223221110         


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                        .......|.+.+|+++|...|.|...
T Consensus        73 --~s~n~~~L~~~~l~~eDTAvYYCAr~   98 (116)
T d1a2yb_          73 --NSKSQVFLKMNSLHTDDTARYYCARE   98 (116)
T ss_dssp             --GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             --CCCceEEcceeeeeeccceEEEEEEe
Confidence              12334579999999999999999854

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.58  E-value=9.5e-05  Score=54.87  Aligned_cols=92  Identities=15%  Similarity=0.174  Sum_probs=54.1

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceE-EEe-ecCCCCCceeEeeeccCCccceee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWE-KCA-QTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~-C~a-~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +.+..+....+++|++|+|+|.++|...-  .+.|+|.  |+.|.--|.+. +.- .+...+-+++++.-.+        
T Consensus         2 V~L~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD--------   73 (124)
T d2b1hh1           2 IQLEQSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSAD--------   73 (124)
T ss_dssp             CEEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEE--------
T ss_pred             ceEeeECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeec--------
Confidence            44556777889999999999999997754  4789984  44333111110 000 0000111222221100        


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                         .......|.+.+|.++|...|.|...
T Consensus        74 ---~s~~t~yL~~~~L~~eDTA~YYCAR~   99 (124)
T d2b1hh1          74 ---RSTNTAHLQWSSLKPSDTALYYCARL   99 (124)
T ss_dssp             ---TTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ---CCCcEEEEeeeccccccceEEEEeec
Confidence               02334578999999999999999544

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.57  E-value=0.00016  Score=53.51  Aligned_cols=71  Identities=15%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      |..+.+.+|++++|.|.........+.|++-  +..   +.         ...++.....+....|.|.+++++|++.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Yy   87 (108)
T d1jhll_           8 PSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYI   87 (108)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEE
T ss_pred             CCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEE
Confidence            4567889999999999987765667899872  111   10         123445555666779999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+.+
T Consensus        88 CA~~~   92 (108)
T d1jhll_          88 CQQHN   92 (108)
T ss_dssp             EEECS
T ss_pred             EeeCC
Confidence            97654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=3.4e-05  Score=59.12  Aligned_cols=89  Identities=9%  Similarity=-0.029  Sum_probs=51.2

Q ss_pred             CCCCceEecCCCeEEEEEEEee----ecCCeeeeeeCCeeeeeccceEEEee--cC------CCCCceeEeeeccCCccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIG----EPVPHVDWRAGGNPLNLRPIWEKCAQ--TE------GDTPKGKVLDLIEGNHPI   74 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g----~P~p~v~W~~~~~~l~~~G~Y~C~a~--n~------~~~~~~~v~~~~~~~~p~   74 (616)
                      ..|+++.+..|++|+|.|....    .....|.|+|....   .+...+...  +.      .+..++++.-.       
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~-------   73 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEG---GRDAISIFHYAKGQPYIDEVGTFKERIQWV-------   73 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETT---CCCCEEEEEEETTEEEECSSSTTTTCEEEC-------
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEeccc---CCceeEEEEEeecccccccCccceeEEEEE-------
Confidence            3588899999999999998542    22347999974211   000111100  00      00011122210       


Q ss_pred             eeeccccCCCCCceEecCcccCCeEEEEEEEEcCC
Q psy12426         75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNKG  109 (616)
Q Consensus        75 w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~~  109 (616)
                          +.......+|.|.+++..|+|.|.|.+.+..
T Consensus        74 ----~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~  104 (119)
T d1neua_          74 ----GDPSWKDGSIVIHNLDYSDNGTFTCDVKNPP  104 (119)
T ss_dssp             ----CBGGGTBCCEEECSCCGGGCEEEEEEEEC--
T ss_pred             ----EECCCCEEEEEECCCChHHCEEEEEEEEECC
Confidence                1112334689999999999999999998643

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00011  Score=54.15  Aligned_cols=84  Identities=13%  Similarity=0.100  Sum_probs=51.0

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEee-c-CCC------CCceeEeeeccCCc
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQ-T-EGD------TPKGKVLDLIEGNH   72 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~-n-~~~------~~~~~v~~~~~~~~   72 (616)
                      .+.+.-...+++|++|+|+|.++|....  .+.|+|.  |+-|.      +.+. + ..+      +.+++++.-     
T Consensus         3 qL~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkgle------wl~~i~~~~~~~~y~~s~kgRftiS-----   71 (119)
T d1eapb1           3 QLQESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLE------WIGYISPGNGDIKYNEKFKVKATLT-----   71 (119)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEE------EEEEECTTTCCEEECGGGTTTEEEE-----
T ss_pred             EEEeECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccce------eeeecCCcccchhhhhhhhcceEEE-----
Confidence            3445667789999999999999997654  4889985  33332      1110 0 000      011222110     


Q ss_pred             cceeeccccCCCCCceEecCcccCCeEEEEEEE
Q psy12426         73 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLA  105 (616)
Q Consensus        73 p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a  105 (616)
                            .........|++.+|+++|.+.|.|..
T Consensus        72 ------rD~s~nt~~L~~~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          72 ------ADQSSSTAYMQLNSLTSEDSAVYFCKR   98 (119)
T ss_dssp             ------EEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ------cccCcceEEeeeecccCCcceEEEEEE
Confidence                  001223457899999999999999964

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.57  E-value=0.00013  Score=54.55  Aligned_cols=85  Identities=14%  Similarity=0.188  Sum_probs=50.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeec---CCCCCceeEeeeccCCccceeecccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQT---EGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n---~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      +.|..+.+.+|++|+|+|...+. ...+.|||.  |+.+..-. |. ...+   ..+...++..            ....
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~-~~-~~~~~~~~~~~~~~~f~------------~~~~   68 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLL-HF-VKESKQDESGMPNNRFL------------AERT   68 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEE-EE-ETTEEEECTTCCSTTEE------------EECT
T ss_pred             ECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecc-ee-cccCcccccCCCCccEE------------EEcC
Confidence            45889999999999999985432 357999985  33332100 00 0000   0000111111            1111


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEE
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ......|+|.++.++|++.|.|.+.
T Consensus        69 ~~~~~~L~i~~~~~~Dsa~YyCa~~   93 (111)
T d2esve1          69 GGTYSTLKVQPAELEDSGVYFCASS   93 (111)
T ss_dssp             TSSSEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEECCcccCCCceEEEeee
Confidence            2224579999999999999999876

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.56  E-value=0.0002  Score=53.80  Aligned_cols=83  Identities=14%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeee--CCeeeee-----ccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRA--GGNPLNL-----RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~--~~~~l~~-----~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.|..+.+.+|++|+|.|...+. ...+.|||  .|+.+..     .+...-.    ......            . ...
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~----~~~~~~------------~-~~~   65 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNK----GNFPGR------------F-SGR   65 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEE----CSCCTT------------E-EEE
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccc----cccccc------------e-eec
Confidence            44888999999999999996542 35799998  3333321     0000000    000000            0 000


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ........|+|.+++++|++.|.|.+..
T Consensus        66 ~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          66 QFSNSRSEMNVSTLELGDSALYLCASSL   93 (113)
T ss_dssp             ECTTSCEEEEECSCCGGGCEEEEEEEES
T ss_pred             cCcCCeeEEEECCCCcccceeeeeeeeC
Confidence            1122346899999999999999998874

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=0.0002  Score=54.52  Aligned_cols=73  Identities=15%  Similarity=0.278  Sum_probs=52.2

Q ss_pred             cCCcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee------ec----------------ccCcEEEE-ecCCceEEE
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT------II----------------SKDRFKIV-NDDKSTKLK  275 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~------~~----------------~~~~~~~~-~~~~~~~l~  275 (616)
                      ..|..+.+.+|++++|.|.+.+.....+.|++-  +..      +.                ...++... ..+....|+
T Consensus         6 ~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~   85 (122)
T d1nezg_           6 IFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLT   85 (122)
T ss_dssp             EESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEE
T ss_pred             EcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEE
Confidence            346778899999999999998887788999871  211      10                01122222 234456899


Q ss_pred             ecCCCCCCcEEEEEEEEc
Q psy12426        276 VFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       276 i~~l~~~~~g~y~c~a~n  293 (616)
                      |.+++++|+|.|.|.+..
T Consensus        86 I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          86 LNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             ESSCCGGGCEEEEEEEEE
T ss_pred             EcccccCCCEEEEeeEeC
Confidence            999999999999998763

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.56  E-value=0.00018  Score=53.50  Aligned_cols=94  Identities=10%  Similarity=0.070  Sum_probs=54.5

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEe--ecCCCCCceeEeeeccCCccceee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCA--QTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a--~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      |.+.++....+++|++|+|+|.++|.-..  .+.|+|.  |+-|.--|.+.+..  .+...+.+++++.-.+        
T Consensus         2 v~L~esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD--------   73 (127)
T d2fx7h1           2 VQLVQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITAD--------   73 (127)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEE--------
T ss_pred             CcEEeECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEecc--------
Confidence            44555667789999999999999986654  3889974  44332111110000  0000001122221000        


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                         .......|.+.+|+++|.+.|.|.....
T Consensus        74 ---~s~~t~yL~~~sL~~eDTavYYCAR~~~  101 (127)
T d2fx7h1          74 ---RSTSTAYLELNSLRPEDTAVYYCAREGT  101 (127)
T ss_dssp             ---TTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             ---CccceEeeeecccCcccceEEEEeeccc
Confidence               0233457899999999999999987643

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.56  E-value=0.00013  Score=53.97  Aligned_cols=83  Identities=11%  Similarity=0.131  Sum_probs=49.5

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      |..+.+.+|++|+|.|.........+.|||.  |+.+..     -...+..          .+.+.+.-... .......
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~-----l~~~~~~----------~~~~~~~~~~~-~~~~~~~   70 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVL-----VVYDDSD----------RPSGIPERFSG-SNSGNMA   70 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEE-----EEBTTTB----------CCTTSCTTEEE-EEETTEE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEE-----EEEcccc----------CCCceeeeEee-ecCCCcc
Confidence            4579999999999999976555567999974  332221     0000000          00000000000 0022345


Q ss_pred             ceEecCcccCCeEEEEEEEEc
Q psy12426         87 KGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      .|.|.+|+++|++.|.|.+..
T Consensus        71 ~L~I~~l~~~DsavYyCA~~~   91 (109)
T d1w72l1          71 TLTISRVEAGDEADYYCQVWD   91 (109)
T ss_dssp             EEEESSCCGGGCEEEEEEEEE
T ss_pred             ceEEeeeccCCCEEEEEEecC
Confidence            789999999999999998763

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.56  E-value=0.00013  Score=53.64  Aligned_cols=91  Identities=11%  Similarity=0.065  Sum_probs=53.0

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeecc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.+...-.|++|++++|+|.++|....  .+.|+|.  |+.|.--|.....  ..+...+.+++++.-.+          
T Consensus         4 L~eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD----------   73 (118)
T d2fbjh1           4 LLESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRD----------   73 (118)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEC----------
T ss_pred             EeeECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeec----------
Confidence            344556789999999999999997765  4789974  4433310000000  00000112222221100          


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                       .......|.+.+|+++|.+.|.|....
T Consensus        74 -~s~nt~~L~~~sL~~eDtAvYYCAr~~  100 (118)
T d2fbjh1          74 -NAKNSLYLQMSKVRSEDTALYYCARLH  100 (118)
T ss_dssp             -SSSCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             -CccceeeccccccCCCcceEEEeeEec
Confidence             123345789999999999999998653

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=4.5e-05  Score=56.70  Aligned_cols=75  Identities=19%  Similarity=0.209  Sum_probs=51.2

Q ss_pred             EEcCCeEEEEEEEeeecCceeEEEECCeeecc-------------------cCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        228 VRAGSNFEFDINVIGEPIPTKEWLCNDITIIS-------------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       228 v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      +.+|+++.|.|.........+.|+|.......                   ..|..+..   ..+|.|.++..+|+|.|+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~---ngSL~I~~v~~~D~G~Y~   87 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS---NGSLLFQMITMKDMGVYT   87 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECT---TSCEEECSCCGGGCEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcc---cccEEEcCCCchhCEEEE
Confidence            45899999999754444568999985433110                   12344332   348999999999999999


Q ss_pred             EEEEcCCC-CceeeEEEE
Q psy12426        289 LAVKNSWG-TDKGTAKVT  305 (616)
Q Consensus       289 c~a~n~~g-~~~~~~~l~  305 (616)
                      |.+.+..+ ....++.|.
T Consensus        88 c~v~~~~~~~~~~~v~L~  105 (107)
T d1l6za1          88 LDMTDENYRRTQATVRFH  105 (107)
T ss_dssp             EEEEETTEEECCCCEEEC
T ss_pred             EEEEECCCCEEEEEEEEE
Confidence            99987654 344455554

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.55  E-value=0.00012  Score=53.67  Aligned_cols=91  Identities=13%  Similarity=0.107  Sum_probs=52.8

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecC--CeeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPV--PHVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~--p~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +.+..+....+++|++|+|+|.++|.-.  -.+.|+|.  |+-|.--|.+...  ..+.....+++++.-.         
T Consensus         2 v~L~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~---------   72 (117)
T d1mfah1           2 VQVQQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTA---------   72 (117)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEE---------
T ss_pred             ceEEeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEc---------
Confidence            3445577888999999999999998654  35889984  4433211110000  0000011122222100         


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLA  105 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a  105 (616)
                        ........|+|.+|+.+|.+.|.|..
T Consensus        73 --D~s~~~~~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          73 --VTSTTTAYMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             --ETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             --ccCccEeEeeecccCCCcceEEEEec
Confidence              00223457899999999999999974

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.55  E-value=0.00017  Score=54.70  Aligned_cols=83  Identities=13%  Similarity=0.179  Sum_probs=50.7

Q ss_pred             CCCceEecCCCeEEEEEEEeeec--CCeeeeeeC--CeeeeeccceEEEeecC--CC-CCceeEeeeccCCccceeeccc
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEP--VPHVDWRAG--GNPLNLRPIWEKCAQTE--GD-TPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~--~~~l~~~G~Y~C~a~n~--~~-~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      .+..+.|.+|++|+|+|...|..  ...+.|||.  |+.+..      ...+.  .+ ..++++..         ..  .
T Consensus         7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~------l~~~~~~~~~~~~~r~~~---------s~--~   69 (120)
T d1hxma1           7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTF------IYREKDIYGPGFKDNFQG---------DI--D   69 (120)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEE------EEETTTEECTTTTTTEEE---------EE--E
T ss_pred             cCCCEEECCCCCEEEEEEEeccCccCCcCeEEEcccccccee------eeccccceeeccccccee---------ec--c
Confidence            47788999999999999987654  356999983  332221      00000  00 00111110         00  0


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      .......|.|.++++.|++.|.|....
T Consensus        70 ~~~~~~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          70 IAKNLAVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             GGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             ccccceecccccccccCCceeecCccc
Confidence            122346899999999999999998653

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=7.4e-05  Score=57.26  Aligned_cols=87  Identities=8%  Similarity=0.082  Sum_probs=50.4

Q ss_pred             CCCCceEecCCCeEEEEEEEeeec--C-----CeeeeeeCCeeeeeccceEEEeecC-C----CCCceeEeeeccCCccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEP--V-----PHVDWRAGGNPLNLRPIWEKCAQTE-G----DTPKGKVLDLIEGNHPI   74 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P--~-----p~v~W~~~~~~l~~~G~Y~C~a~n~-~----~~~~~~v~~~~~~~~p~   74 (616)
                      +.|++++|.+|+.|.|.|......  .     ..+.|++.+..-.....+   +.+. .    ....+++..        
T Consensus         6 ~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~R~~~--------   74 (121)
T d2g5ra1           6 TMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPV---ATNNPAWAVQEETRDRFHL--------   74 (121)
T ss_dssp             ECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCS---EESCTTSCCCTTTTTTEEE--------
T ss_pred             EeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEE---eeCCCCceeccccceEEEE--------
Confidence            457899999999999999864211  1     247799875432211111   1111 0    001111111        


Q ss_pred             eeeccccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        75 w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                         .........+|.|.+|+++|+|.|.|+...
T Consensus        75 ---~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          75 ---LGDPQTKNCTLSIRDARMSDAGRYFFRMEK  104 (121)
T ss_dssp             ---CSCGGGTBCCEEECSCCGGGCEEEEEEEEE
T ss_pred             ---eeeCcCCEEEEEECCCChHHCEEEEEEEEe
Confidence               111123457899999999999999999873

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.54  E-value=0.00014  Score=54.77  Aligned_cols=84  Identities=11%  Similarity=0.107  Sum_probs=49.9

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCC-CceeEeeeccCCccceeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDT-PKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~-~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      +.|..+.+.+|++|+|.|...+. ...+.|||.  |+.+..    .-...+.... ......         .  ......
T Consensus         5 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~----l~~~~~~~~~~~~~~~~---------~--~~~~~~   68 (115)
T d1ogad1           5 QSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVL----LVTVVTGGEVKKLKRLT---------F--QFGDAR   68 (115)
T ss_dssp             EECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEE----EEEECSTTCEEEETTEE---------E--EECTTS
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceee----eeeeeecccceeecccc---------c--cccccc
Confidence            45888999999999999997654 347999984  222110    0000000000 000000         0  001123


Q ss_pred             CCCceEecCcccCCeEEEEEEEE
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....|.|.+++++|++.|.|.+.
T Consensus        69 ~~~~L~I~~~~~~Dsa~YyCa~~   91 (115)
T d1ogad1          69 KDSSLHITAAQPGDTGLYLCAGA   91 (115)
T ss_dssp             SEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ceeeeeecCCCccceeeEccccc
Confidence            45689999999999999999876

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.54  E-value=0.00015  Score=53.08  Aligned_cols=85  Identities=13%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--Ceeeee------ccceEEEeecCCCCCceeEeeeccCCccce
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNL------RPIWEKCAQTEGDTPKGKVLDLIEGNHPIW   75 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~------~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w   75 (616)
                      +.+.....+++|++|+|+|.++|....  .+.|+|.  |+-|.-      .|. ...+    .+.+++++.-.       
T Consensus         4 L~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~-~~y~----~~~kgR~tis~-------   71 (116)
T d7fabh1           4 LEQSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGT-TLLD----PSLRGRVTMLV-------   71 (116)
T ss_dssp             EEEECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSC-EEEC----GGGTTTEEEEE-------
T ss_pred             EEeECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeeccccc-ceec----cceeecceeec-------
Confidence            334556788999999999999997665  4889984  333321      111 0000    00112222110       


Q ss_pred             eeccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                          ........|.|.+|+++|.+.|.|...
T Consensus        72 ----D~s~~~~~L~i~~L~~eDtAvYyCAr~   98 (116)
T d7fabh1          72 ----NTSKNQFSLRLSSVTAADTAVYYCARN   98 (116)
T ss_dssp             ----ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ----ccchhhhhccccccccccceEEEeeee
Confidence                012334578999999999999999864

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.54  E-value=0.00017  Score=53.05  Aligned_cols=90  Identities=12%  Similarity=0.111  Sum_probs=52.3

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeecC----CCCCceeEeeeccCCccceee
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQTE----GDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n~----~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +.+.....|++|++++|+|.++|....  .+.|+|.  |+-|.--|...+...+.    ..+.+++++.-.         
T Consensus         4 L~esG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~---------   74 (120)
T d1dlfh_           4 LEESGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISR---------   74 (120)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEE---------
T ss_pred             EeeECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeec---------
Confidence            344556678999999999999987654  4889984  44333111110100000    011222222100         


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                        ........|++.+|+++|...|.|...
T Consensus        75 --D~s~n~~~L~~~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          75 --DDSKRRVYLQMNTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             --ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             --ccccceeccceeeccCCCceEEEeeEe
Confidence              012334578999999999999999765

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.54  E-value=0.0001  Score=53.71  Aligned_cols=89  Identities=11%  Similarity=0.057  Sum_probs=50.6

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeecc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.+.....+++|++++|+|.++|....  .+.|+|.  |+-+.--|.+...  ..+...+.+++++.-.           
T Consensus         4 L~eSG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSr-----------   72 (114)
T d1indh1           4 LVESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISR-----------   72 (114)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEE-----------
T ss_pred             EeeECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEec-----------
Confidence            334556679999999999999997654  4789985  3333210000000  0000011122222100           


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLA  105 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a  105 (616)
                      ........|++.+|..+|...|.|..
T Consensus        73 D~s~nt~~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          73 DNAQNNLYLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             ETTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred             cCccceeeeeeeeeccCcccEEEECC
Confidence            01233456999999999999999974

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.53  E-value=0.00014  Score=54.33  Aligned_cols=92  Identities=11%  Similarity=0.136  Sum_probs=53.9

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEe--ecCCCCCceeEeeeccCCccceee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCA--QTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a--~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +.+.++....+++|++|+|+|.++|...-  .+.|+|.  |+-|.--|.+.+.-  .+...+.+++++.-.         
T Consensus         2 v~L~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~---------   72 (125)
T d1rihh1           2 VQLQQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTA---------   72 (125)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEE---------
T ss_pred             CceEeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEec---------
Confidence            44556778889999999999999987654  4889984  44332111110000  000000111211100         


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                        ........|.+.+|+++|.+.|.|...
T Consensus        73 --D~s~n~vyL~l~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          73 --DRSSNTAFMYLNSLTSEDSAVYYCARE   99 (125)
T ss_dssp             --ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             --ccCcceEeeeeeccCcccceEEEEeee
Confidence              002334568999999999999999865

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.53  E-value=0.00011  Score=54.70  Aligned_cols=91  Identities=11%  Similarity=0.116  Sum_probs=53.6

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +.+..+....+++|++|+|+|.++|...-  .+.|+|.  |+.|.=-|.....  -.+...+.+++++.-.+        
T Consensus         2 v~L~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D--------   73 (127)
T d1n0xh1           2 VQLVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTAD--------   73 (127)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEE--------
T ss_pred             CcEEeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecc--------
Confidence            34556778899999999999999996654  4889984  3333210000000  00000112233321111        


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLA  105 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a  105 (616)
                         .......|.+.+|+++|.+.|.|..
T Consensus        74 ---~s~nt~yL~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          74 ---TSANTAYMELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             ---GGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ---cCceEEEEEEEccCCCCceEEEEEe
Confidence               0233457899999999999999964

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.53  E-value=0.0001  Score=54.49  Aligned_cols=90  Identities=14%  Similarity=0.118  Sum_probs=52.2

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeecc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.+.....|++|++|+|+|.++|...-  .+.|+|.  |+.|.--|...+.  ..+...+.+++++.-.+          
T Consensus         4 L~esG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D----------   73 (123)
T d1mqkh_           4 LQESGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRD----------   73 (123)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEE----------
T ss_pred             EeeECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEec----------
Confidence            344556789999999999999997654  4789984  4433210000000  00001112222221100          


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       .......|.+.+|+++|.+.|.|...
T Consensus        74 -~s~nt~~L~i~~L~~eDtAvYYCAr~   99 (123)
T d1mqkh_          74 -NAKNTLYLQMSSLKSEDTAMYYCVRH   99 (123)
T ss_dssp             -GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             -CcccccccceeeeccCcccceeEEec
Confidence             02234568999999999999999765

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.52  E-value=0.00015  Score=53.20  Aligned_cols=92  Identities=12%  Similarity=0.135  Sum_probs=53.8

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeec--CCCCCceeEeeeccCCccceee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQT--EGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n--~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      |.+.+.....+++|++|+|+|.++|...-  .+.|+|.  |+-|.--|.+.+.-.+  .....+++++.-.+        
T Consensus         2 v~L~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D--------   73 (118)
T d1ct8b1           2 VKLLESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVD--------   73 (118)
T ss_dssp             CEEEECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEE--------
T ss_pred             CCEEeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEec--------
Confidence            34455667889999999999999996653  5889984  4444311111000000  00011222221100        


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                         .......|.+.+|+++|.+.|.|...
T Consensus        74 ---~s~~t~yL~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          74 ---TSSSTAYMQFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             ---GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ---CccceEEecccccCCCcceEEEEeee
Confidence               12334578999999999999999754

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00016  Score=54.86  Aligned_cols=88  Identities=13%  Similarity=0.147  Sum_probs=56.0

Q ss_pred             CCcceEEEcCCeEEEEEEEeeec---CceeEEEECCee-----ec---------ccCcEEEE--ecCCceEEEecCCCCC
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEP---IPTKEWLCNDIT-----II---------SKDRFKIV--NDDKSTKLKVFDSKRG  282 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p---~~~~~W~~~~~~-----~~---------~~~~~~~~--~~~~~~~l~i~~l~~~  282 (616)
                      .|..+.+.+|++++|.|......   ...+.|++....     +.         ...+..+.  ......+|+|.++...
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            45678899999999999875332   235779874321     10         11233332  3344578999999999


Q ss_pred             CcEEEEEEEEcCCCCceeeEEEEEecC
Q psy12426        283 DSGIYTLAVKNSWGTDKGTAKVTVLDI  309 (616)
Q Consensus       283 ~~g~y~c~a~n~~g~~~~~~~l~v~~~  309 (616)
                      |+|.|.|.+............|.|.+.
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            999999988543222334456666554

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.52  E-value=0.00015  Score=53.35  Aligned_cols=90  Identities=10%  Similarity=0.137  Sum_probs=52.6

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC---eeeeeeC--CeeeeeccceEEEe-ecCCCCCceeEeeeccCCccceeecc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP---HVDWRAG--GNPLNLRPIWEKCA-QTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p---~v~W~~~--~~~l~~~G~Y~C~a-~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.+.....|++|++|+|+|.++|....   .+.|+|.  |+-|.--|.....- .+...+.+++++.-.+          
T Consensus         4 L~esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D----------   73 (119)
T d1ncwh1           4 LQQSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRD----------   73 (119)
T ss_dssp             EEEESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEE----------
T ss_pred             EEeECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecc----------
Confidence            344566789999999999999998764   3789874  44443211100000 0000011222221111          


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       .......|.+.+|+++|...|.|...
T Consensus        74 -~s~nt~~L~~~sL~~eDTAvYYCAr~   99 (119)
T d1ncwh1          74 -TSKNQFFLQLNSVTTEDTATYYCAGL   99 (119)
T ss_dssp             -TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             -cccceeeccccccccCCceEEEEeEe
Confidence             12334578999999999999999754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.51  E-value=6.1e-06  Score=60.03  Aligned_cols=85  Identities=9%  Similarity=0.171  Sum_probs=48.6

Q ss_pred             ceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCCce
Q psy12426         11 DIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPKG   88 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~l   88 (616)
                      ...|.+|++|+|+|...+. ...+.|||.  |+.+..-..   ...+......++...           ..........|
T Consensus         2 slsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~---~~~~~~~~~~~r~~~-----------~~~~~~~~~~L   66 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLIL---IRSNEREKHSGRLRV-----------TLDTSKKSSSL   66 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCE---EESSSCCCCSSSCCB-----------CCBGGGTBCCB
T ss_pred             CceECCCCCEEEEEEEeCC-cccEEEEEECCCCCcccccc---ccceeccccccccee-----------eccCcceeccc
Confidence            4578999999999986543 347999984  332221000   000110001111110           00012234579


Q ss_pred             EecCcccCCeEEEEEEEEcCCC
Q psy12426         89 KVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        89 ~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      +|.+++++|++.|.|.+....|
T Consensus        67 ~I~~~~~~Dsa~YyCA~~~~~g   88 (96)
T d1ymmd1          67 LITASRAADTASYFCATDTTSG   88 (96)
T ss_dssp             CCSSCCSTTCSCCEEEEEETTS
T ss_pred             CcCCCCcccCEEEeEeEecCCC
Confidence            9999999999999999875443

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.51  E-value=0.00017  Score=53.31  Aligned_cols=71  Identities=15%  Similarity=0.203  Sum_probs=53.5

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      |..+.+.+|++++|.|.........+.|++-  +..   +.         ...++.....+....|.|.+++++|++.|.
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEE
Confidence            4567889999999999987766667889873  211   11         124566666667789999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+..
T Consensus        88 Ca~~~   92 (107)
T d1d5il1          88 CLQYD   92 (107)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            98754

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=0.0001  Score=56.23  Aligned_cols=85  Identities=9%  Similarity=0.004  Sum_probs=49.9

Q ss_pred             CCCceEecCCCeEEEEEEEee---ecC---CeeeeeeCCeeeeeccceEEEeecC-----CCCCceeEeeeccCCcccee
Q psy12426          8 HLGDIKLSAGTTLKFDANIIG---EPV---PHVDWRAGGNPLNLRPIWEKCAQTE-----GDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g---~P~---p~v~W~~~~~~l~~~G~Y~C~a~n~-----~~~~~~~v~~~~~~~~p~w~   76 (616)
                      .|+.+.+.+|+.|.|.|....   .+.   -.+.|++.....     ........     .....++...          
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~~~~~~~~~r~~~----------   70 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGK-----RQVVIHSGDPKLVDKRFRGRAEL----------   70 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTT-----CEEEEESSCGGGSCTTTTTTEEE----------
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceec-----cceeeeeccccccccccCCCeEE----------
Confidence            478999999999999998652   111   135677754311     11111110     0001111111          


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                       .........+|.|.+|+..|+|.|.|++...
T Consensus        71 -~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          71 -MGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             -CSCGGGTBCCEEECSCCGGGCEEEEEEEECC
T ss_pred             -EEeCcCCEEEEEECCCChhHCEEEEEEEEeC
Confidence             1111334678999999999999999998743

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=0.00021  Score=52.77  Aligned_cols=68  Identities=15%  Similarity=0.235  Sum_probs=52.0

Q ss_pred             ceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEEEEE
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~  290 (616)
                      .+.+.+|++++|.|.........+.|++-  +..   +.         ...++.....+....|.|.+++++|++.|.|.
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence            46788999999999998766667999973  211   11         13466666667778999999999999999997


Q ss_pred             EE
Q psy12426        291 VK  292 (616)
Q Consensus       291 a~  292 (616)
                      +.
T Consensus        89 ~~   90 (106)
T d1lk3l1          89 QS   90 (106)
T ss_dssp             EC
T ss_pred             cc
Confidence            64

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=8.7e-05  Score=55.88  Aligned_cols=80  Identities=10%  Similarity=0.155  Sum_probs=45.4

Q ss_pred             ceEecCCCeEEEEEEEeee--cCCeeeeeeCC--eeeeeccceEEEeecCCC-C----CceeEeeeccCCccceeecccc
Q psy12426         11 DIKLSAGTTLKFDANIIGE--PVPHVDWRAGG--NPLNLRPIWEKCAQTEGD-T----PKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~--P~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~-~----~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      ...|.+|++|+|.|...+.  ....+.|+|..  ..+.     .....+... .    -.+++.           .....
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~-----~l~~~~~~~~~~~~~~~~R~~-----------~~~~~   71 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPK-----TLACTERPSKNSHPVQVGRII-----------LEDYH   71 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCE-----EEEECCSSCCSSCCEEETTEE-----------EEEET
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCE-----EEEecCCCCceEcceECCeEE-----------EEEEC
Confidence            4678899999999987643  34568899842  2111     000000000 0    000111           00011


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEE
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ......|+|.+|+++|+|.|.|...
T Consensus        72 ~~~~~~Lti~~l~~~Dsg~Y~Cav~   96 (113)
T d1smoa_          72 DHGLLRVRMVNLQVEDSGLYQCVIY   96 (113)
T ss_dssp             TTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CCCEEEEEEccCCcccCceEEEEEE
Confidence            2223569999999999999999764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.50  E-value=0.00017  Score=54.60  Aligned_cols=83  Identities=12%  Similarity=0.059  Sum_probs=49.7

Q ss_pred             CCCCceEecCCCeEEEEEEEeeec--CCeeeeeeCC--eeeeeccceEEEee-cCCCC------CceeEeeeccCCccce
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEP--VPHVDWRAGG--NPLNLRPIWEKCAQ-TEGDT------PKGKVLDLIEGNHPIW   75 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~~l~~~G~Y~C~a~-n~~~~------~~~~v~~~~~~~~p~w   75 (616)
                      +++..+.+.+|++|+|.|.+.+..  ...+.|||..  +.+..      .+. +..+.      ..++..          
T Consensus         6 Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~------l~~~~~~~~~~~~~~~~~r~~----------   69 (120)
T d1ypzf1           6 QPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEF------LLYVLATPTHIFLDKEYKKME----------   69 (120)
T ss_dssp             CSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEE------EEEECSSCCCEEEESSSSEEE----------
T ss_pred             cCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccc------cccccccccceeeeccccccc----------
Confidence            556788888999999999987654  3569999842  22221      000 00000      000000          


Q ss_pred             eeccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       ...........|.|.+|+++|++.|.|.+.
T Consensus        70 -~s~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          70 -ASKNPSASTSILTIYSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             -EEECCTTTEEEEEECSCCGGGCSEEEEEEC
T ss_pred             -cccccccccccccccccccccceeEEEEEc
Confidence             001112234579999999999999999764

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.50  E-value=0.00018  Score=53.62  Aligned_cols=85  Identities=15%  Similarity=0.158  Sum_probs=51.8

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccc-eeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPI-WEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~-w~~~~~~~~   83 (616)
                      +.|..+.+.+|++|+|.|.....-...+.|||.  |+.+..    .-...+..  ..         +.+. .........
T Consensus         5 Q~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~----l~~~~~~~--~~---------~~~~~f~~~~~~~~   69 (110)
T d1ac6a_           5 QTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQF----LFRASRDK--EK---------GSSRGFEATYNKEA   69 (110)
T ss_dssp             ECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEE----EEEECSTT--CE---------EEETTEEEECBTTT
T ss_pred             eCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEE----eeeeeeec--cc---------CCCCceeeeecCCC
Confidence            458889999999999999876555567999984  322221    00000000  00         0000 111111133


Q ss_pred             CCCceEecCcccCCeEEEEEEEE
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....|.|.++.++|++.|.|.+.
T Consensus        70 ~~~~L~i~~~~~~Dsa~YyCA~~   92 (110)
T d1ac6a_          70 TSFHLQKASVQESDSAVYYCALS   92 (110)
T ss_dssp             TBCCEEEEEECGGGCEEEEEEEE
T ss_pred             CEEeeeecCcCcCCCcccceeec
Confidence            45789999999999999999876

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.50  E-value=0.00019  Score=53.08  Aligned_cols=72  Identities=14%  Similarity=0.161  Sum_probs=53.8

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEE
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y  287 (616)
                      .+..+.+.+|++++|.|.........+.|++-  +..   +.         ...++.....+....|.|.+++++|++.|
T Consensus         7 ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~Y   86 (107)
T d1mexl1           7 SQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEY   86 (107)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeE
Confidence            34557889999999999987665567899972  221   11         13466666666778999999999999999


Q ss_pred             EEEEEc
Q psy12426        288 TLAVKN  293 (616)
Q Consensus       288 ~c~a~n  293 (616)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1mexl1          87 FCQQYN   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEeECC
Confidence            998654

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.50  E-value=0.0002  Score=53.16  Aligned_cols=71  Identities=13%  Similarity=0.149  Sum_probs=53.6

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      |..+.+.+|++++|.|.........+.|++-  +..   +.         ...++.....+....|.|.+++++|++.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Yy   87 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYY   87 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEE
Confidence            4567888999999999987666667999982  221   11         124555555667789999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+..
T Consensus        88 CA~~~   92 (109)
T d1mqkl_          88 CQHHY   92 (109)
T ss_dssp             EEECS
T ss_pred             EeeeC
Confidence            98764

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.49  E-value=0.00013  Score=54.36  Aligned_cols=87  Identities=13%  Similarity=0.093  Sum_probs=50.0

Q ss_pred             CCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeeccccC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      .-.-.|++|++++|+|.++|....  .+.|+|.  |+.|.--|...+.  -.+...+.+++++.-.           ...
T Consensus         6 sG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~-----------D~s   74 (124)
T d1zvya1           6 SGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQ-----------DKA   74 (124)
T ss_dssp             ECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEE-----------EGG
T ss_pred             ECCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEec-----------ccc
Confidence            445678999999999999997765  4889985  3333210000000  0000000112222100           002


Q ss_pred             CCCCceEecCcccCCeEEEEEEEE
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      .....|.+.+|.++|++.|.|...
T Consensus        75 ~~t~yLq~~sL~~eDtAvYYCAr~   98 (124)
T d1zvya1          75 KNMAYLRMDSVKSEDTAIYTCGAT   98 (124)
T ss_dssp             GTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceeeceeccccCCcceEEEEeec
Confidence            334578999999999999999875

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=0.00013  Score=55.25  Aligned_cols=84  Identities=8%  Similarity=-0.129  Sum_probs=48.0

Q ss_pred             CCceEecCCCeEEEEEEEee-ecCC--eeeeeeC--CeeeeeccceEEEe-ecCCCCCceeEeeeccCCccceeeccccC
Q psy12426          9 LGDIKLSAGTTLKFDANIIG-EPVP--HVDWRAG--GNPLNLRPIWEKCA-QTEGDTPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g-~P~p--~v~W~~~--~~~l~~~G~Y~C~a-~n~~~~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      |..+.+.+|++|+|.|.... .-..  .+.|||.  |+.+..     |.. .+....+.         ..+.....+...
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~-----~~~~~~~~~~~~---------~~~~~~~~~~~~   71 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEV-----CATTFTEKNTVG---------FLDYPFCSGTFN   71 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEE-----EEEEECSSSBEE---------CTTCTTEEEEEE
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEE-----EEEEeCCccccc---------CCCCcEEEEeCC
Confidence            67889999999999999643 2222  3789984  332221     110 00000000         000000000112


Q ss_pred             CCCCceEecCcccCCeEEEEEEEE
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      .....|.|.+|+++|++.|.|.+.
T Consensus        72 ~~~~~L~I~~l~~~Dsa~YyCa~~   95 (117)
T d1dqta_          72 ESRVNLTIQGLRAVDTGLYLCKVE   95 (117)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEhhcCccccCEeEEEEEe
Confidence            234689999999999999999876

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.49  E-value=0.00012  Score=54.17  Aligned_cols=91  Identities=11%  Similarity=0.108  Sum_probs=51.2

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeec
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      .+.+.-...|++|++|+|+|.++|...-  .+.|+|.  |+.|.--|.....  ..+...+.+++++.-.+         
T Consensus         3 ~L~esg~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D---------   73 (121)
T d1ol0a_           3 QLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRD---------   73 (121)
T ss_dssp             EEEEEECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEE---------
T ss_pred             cEEeECCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEecc---------
Confidence            3444556778999999999999986543  4889985  3333210000000  00000001122221100         


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                        .......|+|.+|+++|.+.|.|...
T Consensus        74 --~s~~~~~L~i~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          74 --NSKNTLYLQMNSLRAEDTAVYYCARE   99 (121)
T ss_dssp             --TTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             --ccceeEEeeeeecccccceEEEEEEe
Confidence              12334579999999999999999754

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.48  E-value=0.0002  Score=53.01  Aligned_cols=86  Identities=9%  Similarity=0.059  Sum_probs=51.4

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecC----CeeeeeeC--Ceeeee------ccceEEEeecCCCCCceeEeeeccCCc
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPV----PHVDWRAG--GNPLNL------RPIWEKCAQTEGDTPKGKVLDLIEGNH   72 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~----p~v~W~~~--~~~l~~------~G~Y~C~a~n~~~~~~~~v~~~~~~~~   72 (616)
                      .+++.....|++|++|+|+|.++|...    -.+.|+|.  |+.|.-      +|. ..-+    .+.+++++.-     
T Consensus         3 ~L~esG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~-t~y~----~s~kgRfTiS-----   72 (120)
T d1ai1h1           3 KLQESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGS-IYYS----PSIKSRSTIS-----   72 (120)
T ss_dssp             EEEEECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSC-EEEC----HHHHTTEEEE-----
T ss_pred             cEEeECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccc-hhhc----hhhcccceec-----
Confidence            344556778999999999999998653    24789885  444431      110 0000    0011122110     


Q ss_pred             cceeeccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         73 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        73 p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                            .........|++.+|+++|.+.|.|...
T Consensus        73 ------rD~s~n~~~L~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          73 ------RDTSLNKFFIQLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             ------EETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ------cccccceeecceeeeeccceeEEEEEec
Confidence                  0012334579999999999999999754

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.47  E-value=0.00012  Score=54.86  Aligned_cols=81  Identities=2%  Similarity=-0.023  Sum_probs=50.0

Q ss_pred             CCCceEecCCCeEEEEEEEeeec-CCeeeeeeC--CeeeeeccceEEEeecCC-CC--CceeEeeeccCCccceeecccc
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEP-VPHVDWRAG--GNPLNLRPIWEKCAQTEG-DT--PKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P-~p~v~W~~~--~~~l~~~G~Y~C~a~n~~-~~--~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      .|..+.+.+|++|+|.|...+.. ...+.|||.  |+.+..      ...... ..  .......             ..
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~------i~~~~~~~~~~~~~~~~~-------------~~   64 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEY------VIHGLTSNVNNRMASLAI-------------AE   64 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEE------EEEESSSSEECSSEEEEE-------------CT
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcce------eeeecceeccccccceee-------------cc
Confidence            36789999999999999977644 356999994  333321      111100 00  0001110             00


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ......|.|.++.+.|++.|.|.+..
T Consensus        65 ~~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          65 DRKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             TSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             cCCeeEEEEeecccccceeEeeeEec
Confidence            22345799999999999999997653

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.47  E-value=0.00027  Score=53.20  Aligned_cols=72  Identities=14%  Similarity=0.196  Sum_probs=51.2

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---ec---------ccCcEEEE--ecCCceEEEecCCCCCCcEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---II---------SKDRFKIV--NDDKSTKLKVFDSKRGDSGI  286 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~~---------~~~~~~~~--~~~~~~~l~i~~l~~~~~g~  286 (616)
                      +..+.+.+|++++|.|.........+.|+|.  +..   +.         ...++.+.  .......|.|.+++++|+|.
T Consensus         8 ~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSAL   87 (115)
T ss_dssp             CSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCcc
Confidence            4557899999999999998777778999873  211   10         11233332  22335679999999999999


Q ss_pred             EEEEEEcC
Q psy12426        287 YTLAVKNS  294 (616)
Q Consensus       287 y~c~a~n~  294 (616)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (115)
T d1lp9e1          88 YYCALFLA   95 (115)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEcC
Confidence            99988654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.47  E-value=0.00015  Score=54.14  Aligned_cols=84  Identities=11%  Similarity=0.103  Sum_probs=49.8

Q ss_pred             CCCCceEecCCCeEEEEEEEeee----cCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGE----PVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~----P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      +.|..+.+.+|+.|+|.|.....    -...+.|||.  |+.+..      ......         ..+.+.+..... .
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~------liy~~~---------~~~~~~~~~~~~-~   69 (111)
T d1j05a_           6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKL------LIYRAS---------NLESGIPVRFSG-T   69 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEE------EEETTT---------EECTTSCTTEEE-E
T ss_pred             ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEE------EEEeec---------cccCCCCCcEEE-e
Confidence            45888999999999999986432    2234999984  433221      000000         000011111111 1


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      .......|.|.+++++|++.|.|.+.
T Consensus        70 ~~~~~~~L~I~~~~~~Dsa~YyCa~~   95 (111)
T d1j05a_          70 GSRTDFTLIIDPVEADDVATYYCQQT   95 (111)
T ss_dssp             CSSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred             cCCCEEEEEEcccccccCccEEEeec
Confidence            12345689999999999999999865

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.47  E-value=0.0002  Score=52.69  Aligned_cols=69  Identities=13%  Similarity=0.148  Sum_probs=51.9

Q ss_pred             ceEEEcCCeEEEEEEEeeecCceeEEEEC--Ceee------------cccCcEEEEecCCceEEEecCCCCCCcEEEEEE
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~  290 (616)
                      .+.+.+|++++|.|.........+.|+|-  +..+            ....++..........|.|.+++++|++.|.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            46788999999999887666667899972  2111            012355556666778999999999999999998


Q ss_pred             EEc
Q psy12426        291 VKN  293 (616)
Q Consensus       291 a~n  293 (616)
                      +..
T Consensus        87 ~~~   89 (103)
T d8faba1          87 AWD   89 (103)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            764

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=0.00064  Score=50.86  Aligned_cols=73  Identities=21%  Similarity=0.301  Sum_probs=52.0

Q ss_pred             CCcceEEEcCCeEEEEEEEeee-cCceeEEEEC--Cee---e----------cccCcEEEEec--CCceEEEecCCCCCC
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGE-PIPTKEWLCN--DIT---I----------ISKDRFKIVND--DKSTKLKVFDSKRGD  283 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~-p~~~~~W~~~--~~~---~----------~~~~~~~~~~~--~~~~~l~i~~l~~~~  283 (616)
                      .|..+.+.+|++++|.|...+. ....+.|++-  +..   +          ....++.+...  .....|.|.+++++|
T Consensus         5 sP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D   84 (114)
T d3bp5a1           5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRND   84 (114)
T ss_dssp             ESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCC
Confidence            3567889999999999998654 3456889872  221   1          12245555543  334679999999999


Q ss_pred             cEEEEEEEEcC
Q psy12426        284 SGIYTLAVKNS  294 (616)
Q Consensus       284 ~g~y~c~a~n~  294 (616)
                      +|.|.|.+...
T Consensus        85 sg~YyCa~~~~   95 (114)
T d3bp5a1          85 SGIYLCGAISL   95 (114)
T ss_dssp             CEEEEEEEECS
T ss_pred             CeEEEEEEEeC
Confidence            99999998754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.46  E-value=0.00023  Score=52.91  Aligned_cols=71  Identities=11%  Similarity=0.134  Sum_probs=53.5

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---e---------cccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      |..+.+.+|++++|.|...+.....+.|++-  +..   +         ....++.....+....|.|.+++++|++.|.
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Yy   89 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYY   89 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEE
Confidence            4567889999999999988766667889872  111   1         1124566666666778999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+..
T Consensus        90 CA~~~   94 (109)
T d1bwwa_          90 CQQYQ   94 (109)
T ss_dssp             EEECS
T ss_pred             EeecC
Confidence            98754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.46  E-value=0.00028  Score=52.40  Aligned_cols=90  Identities=17%  Similarity=0.166  Sum_probs=51.9

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeecc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.+.....+++|++|+|+|.++|...-  .+.|+|.  |+.|.--|.....  -.+...+.+++++.-.           
T Consensus         3 L~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~-----------   71 (126)
T d1lmka1           3 LQQSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTA-----------   71 (126)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE-----------
T ss_pred             eeeECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEe-----------
Confidence            344667889999999999999997664  3889984  3333210000000  0000000112222100           


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ........|.+.+|+++|...|.|...
T Consensus        72 D~s~nt~yL~m~~L~~eDTAvYYCAr~   98 (126)
T d1lmka1          72 DTSSNIAYMQLSSLTSEDSAVYYCARG   98 (126)
T ss_dssp             ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCccEEEeeecccCCCcceEEEEeec
Confidence            012345678999999999999999753

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.46  E-value=0.00019  Score=53.50  Aligned_cols=92  Identities=13%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCCe--eeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeec
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVPH--VDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p~--v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      .+.+.-...+++|++++|+|.++|...-.  +.|+|.  |+-|.--|.....  -.+...+.+++++.-.+         
T Consensus         3 ~L~esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D---------   73 (128)
T d2nxyd1           3 QLVESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITAD---------   73 (128)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEE---------
T ss_pred             EEeeECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeec---------
Confidence            34456677899999999999999977654  789874  3333210000000  00000111222221100         


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                        .......|.+.+|+++|.+.|.|....
T Consensus        74 --~s~~t~yL~~~sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          74 --KSTSTVYLELRNLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             --TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             --CCCceEEeeeeeccccCceEEEEeEEe
Confidence              023345789999999999999999764

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.45  E-value=0.00025  Score=52.64  Aligned_cols=85  Identities=13%  Similarity=0.126  Sum_probs=51.6

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeec-C-------CCCCceeEeeeccCCcc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQT-E-------GDTPKGKVLDLIEGNHP   73 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n-~-------~~~~~~~v~~~~~~~~p   73 (616)
                      +.+.....|++|++|+|+|.++|...-  .+.|+|.  |+.|.      ..+.- .       ..+.+++++.-.+    
T Consensus         4 L~eSg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkgle------wl~~i~~~~~~~~y~~s~kgR~tiS~D----   73 (126)
T d1dfbh1           4 LVESGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLE------WVSGISWDSSSIGYADSVKGRFTISRD----   73 (126)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE------EEEEECTTSSSEEECGGGTTTEEEEEE----
T ss_pred             EeeECCceECCCCCeEEEEEECCccccCCcceeceeCCCccce------eeeecCcccccchhccccccceEEecc----
Confidence            344556779999999999999986654  4889984  33332      11100 0       0001122221000    


Q ss_pred             ceeeccccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         74 IWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        74 ~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                             .......|.+.+|+++|.+.|.|....
T Consensus        74 -------~s~nt~~L~~~~L~~eDtavYYCAr~~  100 (126)
T d1dfbh1          74 -------NAKNSLYLQMNSLRAEDMALYYCVKGR  100 (126)
T ss_dssp             -------TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             -------CCCcEEEeeeeeeccCcceEEEEEecc
Confidence                   023345789999999999999997654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.45  E-value=0.00024  Score=53.08  Aligned_cols=82  Identities=9%  Similarity=0.016  Sum_probs=48.8

Q ss_pred             CCceEecCCCeEEEEEEEeeec--CCeeeeeeCC--eeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEP--VPHVDWRAGG--NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      |..+.|.+|++|+|.|.+.+.-  ...+.|||..  +.+..-..+    .+..           ..+.+....... ...
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~----~~~~-----------~~~~~~~~~~~~-~~~   70 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYY----NDLL-----------PSGVSDRFSASK-SGT   70 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBT----TTBC-----------CTTCCTTEEEEE-ETT
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEE----eeee-----------ccCCCCcceecC-CCC
Confidence            3479999999999999977543  4569999853  222110000    0000           000011000000 223


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ...|.|.+|+++|++.|.|.+.
T Consensus        71 ~~~L~I~~v~~~DsA~YyCA~~   92 (114)
T d2rhea_          71 SASLAISGLESEDEADYYCAAW   92 (114)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEE
T ss_pred             eeeeEecccCcccCceEEEeec
Confidence            5689999999999999999876

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.44  E-value=0.00016  Score=53.83  Aligned_cols=88  Identities=10%  Similarity=0.122  Sum_probs=51.1

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecC----CeeeeeeC--CeeeeeccceEEEeecC-----CCCCceeEeeeccCCc
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPV----PHVDWRAG--GNPLNLRPIWEKCAQTE-----GDTPKGKVLDLIEGNH   72 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~----p~v~W~~~--~~~l~~~G~Y~C~a~n~-----~~~~~~~v~~~~~~~~   72 (616)
                      |.+++.....|++|++|+|+|.++|...    -.+.|+|.  |+.+.--|.    ....     ..+.+++++.-.+   
T Consensus         2 v~L~esg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~----i~~~~~~~y~~~~k~Rftis~D---   74 (123)
T d1r0ah1           2 ITLKESGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLAT----IWWDDDNRYNPSLKSRLTVSKD---   74 (123)
T ss_dssp             CEEEEECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEE----EETTSCCEECTTTGGGEEEEEE---
T ss_pred             CeEEeECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeee----ecCCccccccceeeEEEEcccc---
Confidence            3444455678999999999999988543    24789974  333321000    0000     0011222221000   


Q ss_pred             cceeeccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         73 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        73 p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                              .......|+|.+|+++|+..|.|...
T Consensus        75 --------~s~~~~~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          75 --------TSNNQAFLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             --------GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             --------ccceeEEcceeecccccceEEeeccc
Confidence                    02233569999999999999999754

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.44  E-value=7.5e-05  Score=54.25  Aligned_cols=42  Identities=14%  Similarity=0.195  Sum_probs=31.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeee-c-CCeeeeeeCCeeee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGE-P-VPHVDWRAGGNPLN   44 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P-~p~v~W~~~~~~l~   44 (616)
                      ||++..-++.  .+..|+.++|.|.+.|. | ...|+|+|||+.+.
T Consensus         3 pP~V~v~p~~--~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~   46 (100)
T d1muja1           3 APQATVFPKS--PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVA   46 (100)
T ss_dssp             CCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCC
T ss_pred             CCEEEEEcCC--ccccCCCEEEEEEEEeEECCCCEEEEEeCCeecc
Confidence            6766544333  25678999999999995 4 35799999998775

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.44  E-value=0.0003  Score=52.43  Aligned_cols=90  Identities=13%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCCe--eeeeeC--CeeeeeccceEEEe--ecCCCCCceeEeeeccCCccceeecc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVPH--VDWRAG--GNPLNLRPIWEKCA--QTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p~--v~W~~~--~~~l~~~G~Y~C~a--~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.+.-.-.|++|++++|+|.++|.....  +.|+|.  |+.|.--|.+.+..  .+...+.+++++.-.+          
T Consensus         3 L~esG~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D----------   72 (126)
T d1rjca1           3 LQASGGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLD----------   72 (126)
T ss_dssp             TCCBCCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEE----------
T ss_pred             EEeECCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEec----------
Confidence            4455667899999999999999976654  789984  33332111111100  0001112233221100          


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       .......|.+.+|+++|...|.|...
T Consensus        73 -~s~~~~~L~i~~l~~eDTAvYYCAr~   98 (126)
T d1rjca1          73 -NAKNTLYLQMNSLKPEDTAMYYCAAD   98 (126)
T ss_dssp             -C--CEEEEEECSCCGGGCEEEEEEEC
T ss_pred             -CCceEEEEEEeccCcccCceeEEEee
Confidence             02234568999999999999999865

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.43  E-value=0.00026  Score=52.85  Aligned_cols=91  Identities=14%  Similarity=0.153  Sum_probs=52.9

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeec--CCCCCceeEeeeccCCccceeecc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQT--EGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n--~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +...-...|++|++|+|+|.++|....  .+.|+|.  |+-|.--|.+.+...+  ...+.+++++.-.+          
T Consensus         4 L~eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD----------   73 (135)
T d1ieha_           4 LQASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRD----------   73 (135)
T ss_dssp             EEEECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEEC----------
T ss_pred             EeeECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEecc----------
Confidence            334556678999999999999997654  4889975  3433311110000000  00112223321111          


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                       .......|.+.+|+.+|.+.|.|....
T Consensus        74 -~s~~t~yL~i~~L~~eDTAvYYCAr~~  100 (135)
T d1ieha_          74 -NAKNTLYLQMNSLKSEDTAVYYCAKYS  100 (135)
T ss_dssp             -TTTCCEEEEEESCCSSSCEEEEEEEBS
T ss_pred             -CCCceeEecEeeeCcccceeeEEEEec
Confidence             123445789999999999999997653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.43  E-value=0.00031  Score=52.73  Aligned_cols=72  Identities=22%  Similarity=0.357  Sum_probs=52.5

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEECCe--e---e---------cccCcEEEEe--cCCceEEEecCCCCCCcEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDI--T---I---------ISKDRFKIVN--DDKSTKLKVFDSKRGDSGI  286 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~--~---~---------~~~~~~~~~~--~~~~~~l~i~~l~~~~~g~  286 (616)
                      |..+.+.+|+.++|.|.........+.|++-..  .   +         ....++....  .....+|.|.+++++|+|.
T Consensus         7 P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~   86 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSAS   86 (114)
T ss_dssp             CSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSE
T ss_pred             CCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcc
Confidence            456789999999999998876777899997321  1   1         0112333322  2346789999999999999


Q ss_pred             EEEEEEcC
Q psy12426        287 YTLAVKNS  294 (616)
Q Consensus       287 y~c~a~n~  294 (616)
                      |.|.+...
T Consensus        87 Y~Ca~~~~   94 (114)
T d2cdea1          87 YICVVSDR   94 (114)
T ss_dssp             EEEEEECS
T ss_pred             cceeeecC
Confidence            99999874

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=9.3e-05  Score=55.87  Aligned_cols=82  Identities=10%  Similarity=0.081  Sum_probs=50.6

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--Ceeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccccC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      +.|..+.+.+|+.|+|+|...+.-...+.|||.  ++.+..  ...+.    +..+... +..           ..  ..
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~----~~~~~~~-~fs-----------~~--~~   67 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNS----LQTGIPS-RFS-----------GS--GS   67 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTE----ECTTCCT-TEE-----------EE--EE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeecc----ccCceee-eec-----------cc--CC
Confidence            447889999999999999977655567999985  222221  00000    0000000 000           00  02


Q ss_pred             CCCCceEecCcccCCeEEEEEEEE
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      .....|.|.+++++|++.|.|.+.
T Consensus        68 ~~~~~L~I~~~~~~DsavYyCa~~   91 (119)
T d1f3rb2          68 GTDYTLTISSLQPEDVATYFCYQY   91 (119)
T ss_dssp             BTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCEEEEEcccCccCCCeEEEeecc
Confidence            224579999999999999999865

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.42  E-value=0.0002  Score=53.40  Aligned_cols=83  Identities=12%  Similarity=0.200  Sum_probs=49.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeee-c---CCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccc-eeecc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGE-P---VPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPI-WEKCA   79 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~-P---~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~-w~~~~   79 (616)
                      +.|..+.+.+|++|+|+|..++. .   ...+.|||.  |+.+..    .......           .+.|.|. .... 
T Consensus         6 QsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~----li~~~~~-----------~~~g~~~rfs~~-   69 (111)
T d2gsia1           6 QSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRR----LIYLVSN-----------LESGVPARFSGS-   69 (111)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEE----EEETTTE-----------ECTTCCTTEEEE-
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEE----EEEccCc-----------cCCCcCCcEEEe-
Confidence            44888999999999999987542 2   224899985  332221    0000000           0001111 0000 


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       .......|+|.+++++|++.|.|.+.
T Consensus        70 -~~~~~~~L~I~~~~~~DsA~YyCa~~   95 (111)
T d2gsia1          70 -GSGTDFTLNIHPVEEEDAATYYCSHI   95 (111)
T ss_dssp             -EETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             -cCCCchhcccccccccCCceEEEEEC
Confidence             02235689999999999999999765

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00011  Score=55.66  Aligned_cols=85  Identities=8%  Similarity=0.007  Sum_probs=47.5

Q ss_pred             CCCceEecCCCeEEEEEEEeee---cCCeeeeeeCCeeeeeccceEEEeecCC--CCCceeEeeeccCCccceeeccccC
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGE---PVPHVDWRAGGNPLNLRPIWEKCAQTEG--DTPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~---P~p~v~W~~~~~~l~~~G~Y~C~a~n~~--~~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      .|+.+.+.+|++|+|.|...+.   ..-.+.|+|....-.   .......+..  ....+++.          .. ....
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~---~~~~~~~~~~~~~~~~~r~~----------~~-~~~~   70 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGG---CITLISSEGYVSSKYAGRAN----------LT-NFPE   70 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC--------CEEEEESSSCBCTTTTTTEE----------EE-EETT
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCC---cEEEEECcccccceecCCcc----------Ee-eeCC
Confidence            4889999999999999985422   223578998542111   1111111110  00111111          00 1112


Q ss_pred             CCCCceEecCcccCCeEEEEEEEE
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....+|.|.+|...|+|.|.|.+.
T Consensus        71 ~~~~sL~I~~l~~~DsG~Y~C~v~   94 (116)
T d1xeda_          71 NGTFVVNIAQLSQDDSGRYKCGLG   94 (116)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEES
T ss_pred             CCEEEEEEhhhCcCCCEEEEEEEE
Confidence            234589999999999999999864

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.41  E-value=0.00023  Score=53.22  Aligned_cols=92  Identities=13%  Similarity=0.116  Sum_probs=53.1

Q ss_pred             cCCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceee
Q psy12426          4 IDRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         4 i~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +.+.++....+++|++|+|+|.++|....  .+.|+|.  |+-|.--|.+...  ..+...+.+++++.-.         
T Consensus         2 VqL~esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~---------   72 (130)
T d1rzga1           2 VQLVQSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITA---------   72 (130)
T ss_dssp             CCCEECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEE---------
T ss_pred             ceEeeECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEec---------
Confidence            34556777889999999999999987654  5889984  3333210000000  0000000112221100         


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                        ........|.+.+|+++|.+.|.|...
T Consensus        73 --D~s~~t~yL~~~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          73 --DESTSTAYMELSSLRSEDTAVFYCASP   99 (130)
T ss_dssp             --ETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             --ccccceEEeeeeecCCCccEEEEEEEe
Confidence              002234568899999999999999864

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00032  Score=50.95  Aligned_cols=68  Identities=18%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             eEEEcCCeEEEEEEEeeecCceeEEEECCeee--cc------------cCcEEEEe---cCCceEEEecCCCCCCcEEEE
Q psy12426        226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITI--IS------------KDRFKIVN---DDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~--~~------------~~~~~~~~---~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      +...+|++++|.|.........+.|++.....  ..            ..++....   .....+|+|.+++..|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            55679999999999887777789999854321  11            11222111   112457999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99954

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.41  E-value=0.00026  Score=53.02  Aligned_cols=87  Identities=11%  Similarity=0.165  Sum_probs=49.7

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEee-cCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQ-TEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~-n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      +.|..+++.+|++|+|.|...+ ....|.|||.  ++.+..-..+..... ...+...++..            ......
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~   70 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFF------------AERPEG   70 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEE------------EECTTS
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCcee------------eECCcC
Confidence            4588899999999999998542 3457999984  222211000000000 00000111111            111122


Q ss_pred             CCCceEecCcccCCeEEEEEEEE
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....|+|.+++++|++.|.|.+.
T Consensus        71 ~~~~L~I~~~~~~Dsa~YyCa~~   93 (112)
T d1kgce1          71 SVSTLKIQRTQQEDSAVYLCASS   93 (112)
T ss_dssp             SCEEEEESSCCGGGCEEEEEEEE
T ss_pred             CEEEEEECCCCcCCCEEEEEeee
Confidence            34679999999999999999876

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.41  E-value=0.00041  Score=51.60  Aligned_cols=72  Identities=15%  Similarity=0.272  Sum_probs=51.5

Q ss_pred             CcceEEEcCCeEEEEEEEeeec--CceeEEEEC------CeeecccCcEEEEec--CCceEEEecCCCCCCcEEEEEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP--IPTKEWLCN------DITIISKDRFKIVND--DKSTKLKVFDSKRGDSGIYTLAVK  292 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p--~~~~~W~~~------~~~~~~~~~~~~~~~--~~~~~l~i~~l~~~~~g~y~c~a~  292 (616)
                      |..+.+..|++++|.|...+..  ...+.|++.      ...+....++.....  .....|.|.+++++|++.|.|.+.
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   85 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLG   85 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEe
Confidence            4567788999999999886543  457899972      122333445544432  345689999999999999999886


Q ss_pred             cC
Q psy12426        293 NS  294 (616)
Q Consensus       293 n~  294 (616)
                      ..
T Consensus        86 ~~   87 (112)
T d1sq2n_          86 VA   87 (112)
T ss_dssp             BT
T ss_pred             cC
Confidence            54

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.41  E-value=0.00017  Score=54.11  Aligned_cols=90  Identities=16%  Similarity=0.173  Sum_probs=52.4

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeecC-------CCCCceeEeeeccCCccc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQTE-------GDTPKGKVLDLIEGNHPI   74 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n~-------~~~~~~~v~~~~~~~~p~   74 (616)
                      +.+.-.-.|++|++|+|+|.++|....  .+.|+|.  |+.+.--|.......+.       ..+.+++++.-.+     
T Consensus         4 L~esG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d-----   78 (127)
T d1i3ua_           4 LQESGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRD-----   78 (127)
T ss_dssp             EEEESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEE-----
T ss_pred             EEeECCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEecc-----
Confidence            334556678999999999999986543  4889985  33222111110000000       1112222221100     


Q ss_pred             eeeccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         75 WEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        75 w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                            .......|+|.+|+++|+..|.|.+.
T Consensus        79 ------~s~~~~~L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          79 ------NAKNTVNLQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             ------GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ------CCceEEEEeeecccccceeEEEEEEE
Confidence                  02334579999999999999999976

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00031  Score=52.21  Aligned_cols=83  Identities=11%  Similarity=0.005  Sum_probs=47.8

Q ss_pred             CCceEecCCCeEEEEEEEeeec--CCeeeeeeCC--eeeeeccceEEEeecCCCC--CceeEeeeccCCccceeeccccC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEP--VPHVDWRAGG--NPLNLRPIWEKCAQTEGDT--PKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~--~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      ++.+.+.+|+.|+|.|.....-  ...+.|+|..  +....     -...+....  ..++...           .....
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~-----l~~~~~~~~~~~~~r~~~-----------~~~~~   66 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIR-----LVTSSKPRTMAWTSRFTI-----------WDDPD   66 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEE-----EEEECSTTCCBCSTTEEE-----------EEETT
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEE-----eeeccCccccceeeeEee-----------eeeCC
Confidence            5668899999999999854332  2457899842  22110     001111000  1111110           00112


Q ss_pred             CCCCceEecCcccCCeEEEEEEEEc
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ....+|.|.+|+++|+|.|.|....
T Consensus        67 ~~~~~L~I~~l~~~DsG~Y~C~v~~   91 (108)
T d1hkfa_          67 AGFFTVTMTDLREEDSGHYWCRIYR   91 (108)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCEEEEEEhhhCCCCCEEEEEEEec
Confidence            2346799999999999999998773

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.40  E-value=0.0004  Score=51.70  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=49.7

Q ss_pred             cceEEEcCCeEEEEEEEeeec-CceeEEEEC--Cee---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEP-IPTKEWLCN--DIT---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p-~~~~~W~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      ..+.+.+|++++|.|...... ...+.|++.  +..   +.         ...++..........|.|.+++++|++.|.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY   85 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence            347889999999999876543 446889972  221   10         112333444456678999999999999999


Q ss_pred             EEEEcC
Q psy12426        289 LAVKNS  294 (616)
Q Consensus       289 c~a~n~  294 (616)
                      |.+...
T Consensus        86 Ca~~~~   91 (110)
T d2esvd1          86 CIVVRS   91 (110)
T ss_dssp             EEEEES
T ss_pred             EEEeCC
Confidence            988653

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.40  E-value=0.00024  Score=53.67  Aligned_cols=90  Identities=11%  Similarity=0.064  Sum_probs=51.1

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecC----CeeeeeeC--CeeeeeccceEEEeec--CCCCCceeEeeeccCCcccee
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPV----PHVDWRAG--GNPLNLRPIWEKCAQT--EGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~----p~v~W~~~--~~~l~~~G~Y~C~a~n--~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      .+.+.....|++|++|+|+|.++|...    ..+.|+|.  |+.+.--+. .+...+  ...+.+++++.-.        
T Consensus         3 ~L~esg~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~-i~~~~~~~y~~~~k~Rftis~--------   73 (132)
T d1tjgh1           3 TLKESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAI-IYSDDDKRYSPSLNTRLTITK--------   73 (132)
T ss_dssp             EEEEECCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEE-EETTSCEEECGGGTTTEEEEE--------
T ss_pred             eEEeECCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEE-ecCCCccEeeeeeeecceecc--------
Confidence            344455667999999999999998653    25889985  333321000 000000  0000112222100        


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                         ........|+|.+|+++|+..|.|...
T Consensus        74 ---d~s~~~~~L~i~~l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          74 ---DTSKNQVVLVMTRVSPVDTATYFCAHR  100 (132)
T ss_dssp             ---ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ---cccccEEEcccccCCcccceEEEEEEe
Confidence               002223569999999999999999866

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.40  E-value=0.00037  Score=51.16  Aligned_cols=90  Identities=13%  Similarity=0.116  Sum_probs=52.1

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEE--eecCCCCCceeEeeeccCCccceeecc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKC--AQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~--a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.+...-.|++|++++|+|.++|....  .+.|.|.  |+.|.=-|...+.  ..+...+.+++++.-           .
T Consensus         4 L~esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS-----------~   72 (120)
T d1ad9b1           4 LVQSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLT-----------V   72 (120)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEE-----------E
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEE-----------e
Confidence            344567789999999999999987664  4889984  3333210100000  000000011222210           0


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....+...|.+.+|+++|...|.|...
T Consensus        73 D~s~nt~~L~m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          73 DTSTNTAYMELSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCcceEEeccccccCCCcceEEEEEEc
Confidence            012345578999999999999999764

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.39  E-value=0.00025  Score=53.23  Aligned_cols=90  Identities=13%  Similarity=0.067  Sum_probs=49.9

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecC----CeeeeeeC--CeeeeeccceEEEe-ecCCCCCceeEeeeccCCccceeec
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPV----PHVDWRAG--GNPLNLRPIWEKCA-QTEGDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~----p~v~W~~~--~~~l~~~G~Y~C~a-~n~~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      +...-...|++|++|+|+|.++|.-.    ..+.|+|.  |+.+.--+.+.... .+...+.+++++.-.          
T Consensus         4 L~esG~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~----------   73 (126)
T d1etzb1           4 LKESGPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSK----------   73 (126)
T ss_dssp             EEEECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEE----------
T ss_pred             EEeECCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEec----------
Confidence            33444567899999999999988543    24679974  33332101000000 000001122222110          


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       ........|+|.+|+++|+..|.|...
T Consensus        74 -d~s~~t~~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          74 -DTSSNQVFLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             -ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             -ccCCcEEEcceecccccccceEEEEEe
Confidence             002234579999999999999999864

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.39  E-value=0.0002  Score=52.88  Aligned_cols=90  Identities=12%  Similarity=0.093  Sum_probs=51.7

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEee----cCCCCCceeEeeeccCCccceee
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQ----TEGDTPKGKVLDLIEGNHPIWEK   77 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~----n~~~~~~~~v~~~~~~~~p~w~~   77 (616)
                      +.+.....|++|++|+|+|.++|....  .+.|+|.  |+.|.--|.+.+...    +...+-+++++.-.         
T Consensus         4 L~esg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSr---------   74 (122)
T d1q9rb1           4 LVESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISR---------   74 (122)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEE---------
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeee---------
Confidence            344556789999999999999987654  4889975  433321000000000    00001122222100         


Q ss_pred             ccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         78 CAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        78 ~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                        ........|++.+|+++|...|.|...
T Consensus        75 --D~s~nt~~L~~~sL~~eDTAvYYCar~  101 (122)
T d1q9rb1          75 --DNSQSILYLQMNTLRAEDSATYYCARD  101 (122)
T ss_dssp             --ETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             --ecccceeccceeeeccCcceEEEEEec
Confidence              012334568999999999999999864

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.39  E-value=0.00033  Score=51.32  Aligned_cols=84  Identities=12%  Similarity=0.079  Sum_probs=51.1

Q ss_pred             CCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeecC-----CCCCceeEeeeccCCccceeec
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQTE-----GDTPKGKVLDLIEGNHPIWEKC   78 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n~-----~~~~~~~v~~~~~~~~p~w~~~   78 (616)
                      +.....+++|++|+|+|.++|....  .+.|+|.  |+.|.--|.+    .+.     ..+.+++++.-.          
T Consensus         6 eSg~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i----~~~g~t~y~~s~kgR~tiSr----------   71 (118)
T d1lo4h1           6 ETGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASI----SYGGLLYFSDSVKGRFTISR----------   71 (118)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEE----CTTCCEEECTTTBTTBEEEE----------
T ss_pred             eECCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeec----ccccchhhccccceeEEEec----------
Confidence            3455678999999999999997664  4889985  4444311110    000     011222222100          


Q ss_pred             cccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         79 AQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        79 ~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       ........|.+.+|.++|...|.|...
T Consensus        72 -D~s~nt~~L~i~~l~~eDtA~YyCAr~   98 (118)
T d1lo4h1          72 -DIVRNILTLQMSRLRSEDTAIYYCARG   98 (118)
T ss_dssp             -ETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             -cccceeeeeccccccCCcceEEEeccc
Confidence             002334578999999999999999754

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=6.4e-05  Score=56.02  Aligned_cols=44  Identities=18%  Similarity=0.250  Sum_probs=33.8

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeee-cCC-eeeeeeCCeeee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGE-PVP-HVDWRAGGNPLN   44 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P~p-~v~W~~~~~~l~   44 (616)
                      ||.+..-.|....+..|+.++|.|.+.|. |.. .|+|++||+.+.
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~   49 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELP   49 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcC
Confidence            57776555655567789999999999884 543 699999998764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.39  E-value=0.00063  Score=50.69  Aligned_cols=71  Identities=20%  Similarity=0.302  Sum_probs=50.9

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---ec---------ccCcEEE--EecCCceEEEecCCCCCCcEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---II---------SKDRFKI--VNDDKSTKLKVFDSKRGDSGI  286 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~~---------~~~~~~~--~~~~~~~~l~i~~l~~~~~g~  286 (616)
                      +..+.+.+|++++|.|.........+.|++-  +..   +.         ...++..  ........|.|.+++++|++.
T Consensus         7 p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAV   86 (111)
T ss_dssp             CSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             CCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEE
Confidence            4457789999999999987766667889872  221   10         1123333  233557899999999999999


Q ss_pred             EEEEEEc
Q psy12426        287 YTLAVKN  293 (616)
Q Consensus       287 y~c~a~n  293 (616)
                      |.|.+..
T Consensus        87 YyCa~~~   93 (111)
T d1bd2d1          87 YFCAAME   93 (111)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9998874

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.38  E-value=0.00037  Score=52.04  Aligned_cols=90  Identities=11%  Similarity=0.092  Sum_probs=51.8

Q ss_pred             CCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEe--ecCCCCCceeEeeeccCCccceeecccc
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCA--QTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a--~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      +.....+++|++|+|+|.++|....  .+.|+|.  |+-|.--|.+.+.-  .+...+.+++++.-.+           .
T Consensus         5 esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D-----------~   73 (130)
T d1rhhb1           5 QSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTAD-----------Q   73 (130)
T ss_dssp             ECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEE-----------T
T ss_pred             ccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEecc-----------C
Confidence            3566789999999999999997654  4889984  44332111100000  0000001122211000           0


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEcC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVNK  108 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n~  108 (616)
                      ......|.+.+|+++|.+.|.|.....
T Consensus        74 s~~tv~L~~~~L~~eDtAvYyCAr~~~  100 (130)
T d1rhhb1          74 ATSTAYMELTNLRSDDTAVYYCARDFG  100 (130)
T ss_dssp             TTTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             CccEEEEEeeccCCCCcEEEEEEeecC
Confidence            223456899999999999999987643

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.38  E-value=0.00025  Score=52.28  Aligned_cols=86  Identities=15%  Similarity=0.132  Sum_probs=51.9

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeecCCC------CCceeEeeeccCCccce
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQTEGD------TPKGKVLDLIEGNHPIW   75 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n~~~------~~~~~v~~~~~~~~p~w   75 (616)
                      +.+.....+++|++|+|+|.++|....  .+.|+|.  |+-|.-    ........+      +.+++++.-.       
T Consensus         4 L~esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEw----v~~i~~~~~~~~y~~s~kgR~tiS~-------   72 (124)
T d1yedb1           4 LQQSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEW----IARIYPGTGGTYYNEKFKGKATLTA-------   72 (124)
T ss_dssp             EEECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEE----EEEEETTTTEEEECGGGBTTEEEEE-------
T ss_pred             EEeeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceee----eeeccccccccccccccceeEEEEc-------
Confidence            445667789999999999999997664  4889984  333321    000000000      0112222100       


Q ss_pred             eeccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         76 EKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        76 ~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                          ........|.+.+|+.+|...|.|...
T Consensus        73 ----D~s~~t~~L~~~sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          73 ----DKSSSTAYMQLSSLKSEDSAVYFCTRW   99 (124)
T ss_dssp             ----ETTTTEEEEEEESCCGGGCEEEEEEEC
T ss_pred             ----cCCcceEEecccccCCCcceEEEeccc
Confidence                012334578999999999999999754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00019  Score=53.19  Aligned_cols=81  Identities=5%  Similarity=0.039  Sum_probs=49.2

Q ss_pred             ceEecCCCeEEEEEEEeeecC----CeeeeeeCCeeeee--ccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426         11 DIKLSAGTTLKFDANIIGEPV----PHVDWRAGGNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus        11 ~~~v~~g~~v~l~C~~~g~P~----p~v~W~~~~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      .++...|+.|+|.|.......    -.+.|.+++..+-.  .|...-...     ..+++.         +     ....
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~-----~~~r~~---------~-----~~~g   63 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPE-----YKNRTI---------F-----DITN   63 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHH-----HHTTEE---------E-----ESTT
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecc-----eeeeee---------e-----ccCC
Confidence            467899999999997543221    34788888765532  222110000     000111         0     0123


Q ss_pred             CCceEecCcccCCeEEEEEEEEcCCC
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVNKGG  110 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n~~g  110 (616)
                      ..+|.|.++++.|+|.|.|.+.+..+
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~V~~~~~   89 (105)
T d1dr9a1          64 NLSIVILALRPSDEGTYECVVLKYEK   89 (105)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCT
T ss_pred             cEEEEECcCChHHCeEEEEEEEeCCC
Confidence            56899999999999999999875444

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.37  E-value=0.00073  Score=50.16  Aligned_cols=71  Identities=11%  Similarity=0.104  Sum_probs=51.6

Q ss_pred             CcceEEEcCCeEEEEEEEeeec----CceeEEEEC--Ceee------------cccCcEEEEecCCceEEEecCCCCCCc
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP----IPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDS  284 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p----~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~  284 (616)
                      |..+.+.+|++++|.|..+..-    ...+.|++.  +..+            ....++.....+....|+|.+++++|+
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDA   87 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCC
Confidence            4567889999999999876431    224889873  2221            012466666666778999999999999


Q ss_pred             EEEEEEEEc
Q psy12426        285 GIYTLAVKN  293 (616)
Q Consensus       285 g~y~c~a~n  293 (616)
                      +.|.|.+..
T Consensus        88 A~YyCa~~~   96 (111)
T d2gsia1          88 ATYYCSHIR   96 (111)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEEECC
Confidence            999998754

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.37  E-value=0.0006  Score=51.13  Aligned_cols=87  Identities=9%  Similarity=0.018  Sum_probs=50.0

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCC--eeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGG--NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|++|+|.|... .....+.|||..  +.+..  .+.....+..  ..        ...+.-.........
T Consensus         4 QsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~--l~~~~~~~~~--~~--------~~~~~~~~~~~~~~~   70 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRL--IYYSQIVNDF--QK--------GDIAEGYSVSREKKE   70 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEE--EEEESSTTCC--EE--------CSSCTTEEECCSSTT
T ss_pred             EcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcc--eeeeeeeecc--cc--------ccCCCceEEEcccCC
Confidence            458889999999999999975 334579999843  22221  0000000000  00        000000000011223


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ...|+|.++.++|++.|.|.+.
T Consensus        71 ~~~L~I~~~~~~DSa~YyCa~~   92 (114)
T d1ogae1          71 SFPLTVTSAQKNPTAFYLCASS   92 (114)
T ss_dssp             BCCEEECSCCSCCCEEEEEEEE
T ss_pred             eEEEEECcCCcCCceeEEEeec
Confidence            4579999999999999999766

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.36  E-value=0.00031  Score=52.43  Aligned_cols=71  Identities=23%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Ceee---c---------ccCcEEEE--ecCCceEEEecCCCCCCcEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITI---I---------SKDRFKIV--NDDKSTKLKVFDSKRGDSGI  286 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~~---~---------~~~~~~~~--~~~~~~~l~i~~l~~~~~g~  286 (616)
                      |..+.+.+|+.++|.|.........+.|++-  +...   .         ...+....  ..+....|.|.+++++|++.
T Consensus         6 P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSAT   85 (110)
T ss_dssp             CSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSE
T ss_pred             CCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCcee
Confidence            4567889999999999987655557899973  2111   0         11222222  23445689999999999999


Q ss_pred             EEEEEEc
Q psy12426        287 YTLAVKN  293 (616)
Q Consensus       287 y~c~a~n  293 (616)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (110)
T d1u3ha1          86 YFCAASA   92 (110)
T ss_dssp             EEECCEE
T ss_pred             EeeeecC
Confidence            9998864

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.35  E-value=9.5e-05  Score=54.78  Aligned_cols=70  Identities=14%  Similarity=0.125  Sum_probs=51.3

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Ceee------------cccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      |..+.+.+|++++|.|.........+.|++-  +..+            ....++.....+....|.|.+++++|++.|.
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYF   87 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEE
Confidence            4556788999999999987766667999973  2221            1123444444556789999999999999999


Q ss_pred             EEEE
Q psy12426        289 LAVK  292 (616)
Q Consensus       289 c~a~  292 (616)
                      |.+.
T Consensus        88 Ca~~   91 (107)
T d3cx5k1          88 CQHH   91 (107)
T ss_dssp             EEEC
T ss_pred             eeeC
Confidence            9764

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=0.00043  Score=51.24  Aligned_cols=81  Identities=9%  Similarity=0.050  Sum_probs=47.8

Q ss_pred             CceEecCCCeEEEEEEEeeecCC---eeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426         10 GDIKLSAGTTLKFDANIIGEPVP---HVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~g~P~p---~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      ..+.|.+|++|+|.|..++....   .+.|||.  |+.+..      .......         .+.+.+..+.... ...
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~------l~y~~~~---------~~~~~~~rf~~s~-~~~   71 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTG------LIGGTNN---------RAPGVPARFSGSL-IGN   71 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEE------EEETTTE---------ECTTSCTTEEEEE-ETT
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceee------eeeeece---------eccccceeeeecc-ccc
Confidence            47889999999999998754322   3889983  332221      0000000         0001111011111 234


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ...|.|.+++++|++.|.|.+.
T Consensus        72 ~~~L~I~~~~~~Dsa~YyCa~~   93 (110)
T d1oaql_          72 KAALTITGAQTEDEAIYFCALW   93 (110)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEE
T ss_pred             ceeeecCCCCccccEeEEEEcc
Confidence            5689999999999999999976

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.35  E-value=0.00098  Score=49.57  Aligned_cols=69  Identities=17%  Similarity=0.184  Sum_probs=51.4

Q ss_pred             ceEEEcCCeEEEEEEEeeec--CceeEEEECC--ee---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        225 DIKVRAGSNFEFDINVIGEP--IPTKEWLCND--IT---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p--~~~~~W~~~~--~~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      .+.+.+|++++|.|...+..  ...+.|++-.  ..   +.         ...++.....+....|.|.+++.+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            46788999999999987654  3568899732  11   10         123556665667789999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+..
T Consensus        89 CA~~~   93 (114)
T d2rhea_          89 CAAWN   93 (114)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            99874

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=97.35  E-value=0.00032  Score=51.99  Aligned_cols=73  Identities=12%  Similarity=0.144  Sum_probs=52.9

Q ss_pred             cCCcceEEEcCCeEEEEEEEeee-cCceeEEEEC--Cee---ec---------ccCcEEEEecCCceEEEecCCCCCCcE
Q psy12426        221 DQLSDIKVRAGSNFEFDINVIGE-PIPTKEWLCN--DIT---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSG  285 (616)
Q Consensus       221 ~~~~~~~v~~g~~~~l~c~~~~~-p~~~~~W~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g  285 (616)
                      ..|..+.+.+|++++|.|..... ....+.|++-  +..   +.         ...++.....+....|.|.+++++|++
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa   85 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA   85 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence            33566789999999999987654 3446889873  221   11         124556665666789999999999999


Q ss_pred             EEEEEEEc
Q psy12426        286 IYTLAVKN  293 (616)
Q Consensus       286 ~y~c~a~n  293 (616)
                      .|.|.+.+
T Consensus        86 ~YyCa~~~   93 (108)
T d2fx7l1          86 VYYCQQYG   93 (108)
T ss_dssp             EEEEEECS
T ss_pred             EEeeecCC
Confidence            99998753

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.34  E-value=0.00036  Score=51.65  Aligned_cols=89  Identities=15%  Similarity=0.093  Sum_probs=50.6

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--Ceeeeecc-ceEEE-eecCCCCCceeEeeeccCCccceeeccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRP-IWEKC-AQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G-~Y~C~-a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      .+.-...|++|++++|+|.++|...-  .+.|+|.  |+-|.--| .|..- ..+...+.+++++.-         +  .
T Consensus         5 ~esG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiS---------r--D   73 (122)
T d1bz7b1           5 VESGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTIS---------R--D   73 (122)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEE---------E--E
T ss_pred             eeECCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEe---------c--c
Confidence            34456678999999999999997654  4789984  33332100 00000 000000111222210         0  0


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      .......|.+.+|+++|.+.|.|...
T Consensus        74 ~s~~t~yL~m~sL~~eDTAvYYCAr~   99 (122)
T d1bz7b1          74 NPKNTLFLQMTSLRSEDTAIYYCTRG   99 (122)
T ss_dssp             GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCccEeEeeeeeecccCceEEEeecC
Confidence            02234578999999999999999764

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.34  E-value=0.0005  Score=51.44  Aligned_cols=91  Identities=12%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeecC--CCCCceeEeeeccCCccceeecc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQTE--GDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n~--~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.+.....|++|++++|+|.++|...-  .+.|+|.  |+.|.--|...+...+.  ..+.+++++.-.           
T Consensus         3 L~esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~-----------   71 (133)
T d1rzfh1           3 LVQSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISA-----------   71 (133)
T ss_dssp             EEECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEE-----------
T ss_pred             eeeECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEe-----------
Confidence            344566789999999999999997664  3789884  33332101000000000  000112221100           


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ........|.+.+|+++|...|.|....
T Consensus        72 D~s~~t~~L~~~~L~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          72 DESTRTVYLHLRGLRSDDTAVYYCASNS   99 (133)
T ss_dssp             ETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccCcceeEEeeccCCCCCCEEEEeeecc
Confidence            0023345789999999999999997653

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=97.34  E-value=0.0007  Score=50.53  Aligned_cols=72  Identities=18%  Similarity=0.237  Sum_probs=51.6

Q ss_pred             CCcceEEEcCCeEEEEEEEeeec--CceeEEEEC--Cee----ecccCcEEEEe--cCCceEEEecCCCCCCcEEEEEEE
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEP--IPTKEWLCN--DIT----IISKDRFKIVN--DDKSTKLKVFDSKRGDSGIYTLAV  291 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p--~~~~~W~~~--~~~----~~~~~~~~~~~--~~~~~~l~i~~l~~~~~g~y~c~a  291 (616)
                      .|..+.+.+|++++|.|...+..  ...+.|++.  +..    +....++....  ......|+|.+++++|++.|.|.+
T Consensus         6 ~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~   85 (113)
T d1vesa_           6 TPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA   85 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeee
Confidence            35667889999999999997543  356889872  221    22344554443  234468999999999999999998


Q ss_pred             Ec
Q psy12426        292 KN  293 (616)
Q Consensus       292 ~n  293 (616)
                      ..
T Consensus        86 ~~   87 (113)
T d1vesa_          86 FY   87 (113)
T ss_dssp             EE
T ss_pred             ec
Confidence            65

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.34  E-value=0.00052  Score=51.57  Aligned_cols=73  Identities=19%  Similarity=0.203  Sum_probs=51.4

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---ec----------ccCcEEEEe--cCCceEEEecCCCCCCc
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---II----------SKDRFKIVN--DDKSTKLKVFDSKRGDS  284 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~~----------~~~~~~~~~--~~~~~~l~i~~l~~~~~  284 (616)
                      .+..+.+.+|+.++|.|.........+.|++-  +..   |.          ...++....  ......|.|.+++++|+
T Consensus         6 ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1j8hd1           6 LGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDA   85 (115)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGC
T ss_pred             CCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCC
Confidence            34568899999999999988766667999972  211   10          112233322  23345799999999999


Q ss_pred             EEEEEEEEcC
Q psy12426        285 GIYTLAVKNS  294 (616)
Q Consensus       285 g~y~c~a~n~  294 (616)
                      +.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1j8hd1          86 AEYFCAVSES   95 (115)
T ss_dssp             EEEEEEEESS
T ss_pred             ccceeeecCC
Confidence            9999999764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.33  E-value=0.00038  Score=51.99  Aligned_cols=84  Identities=10%  Similarity=-0.018  Sum_probs=49.7

Q ss_pred             CCCCceEecCCCeEEEEEEEeeec-----CCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEP-----VPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P-----~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.|..+.+.+|++|+|.|..++..     ...+.|||.  |+....      ......         -...+.|..+...
T Consensus         7 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~------l~~~~~---------~~~~~~~~~fs~~   71 (113)
T d1n4xl_           7 QTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQL------LIYKVS---------NRFSGVPDRFSGS   71 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEE------EEETTT---------EECTTCCTTEEEE
T ss_pred             CcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEE------EEEecC---------CCccccCCCeeee
Confidence            458889999999999999976432     246999984  222211      000000         0000111111110


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      . ......|+|.+++++|++.|.|.+.
T Consensus        72 ~-~~~~~~L~I~~~~~~DsavYyCa~~   97 (113)
T d1n4xl_          72 G-SGTDFTLKISRVEAEDLGIYYCFQG   97 (113)
T ss_dssp             E-CSSEEEEEESSCCGGGCEEEEEEEC
T ss_pred             c-cCCcccCccCCCCcccCEEEEEEEC
Confidence            0 2345689999999999999999644

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.32  E-value=0.00044  Score=51.21  Aligned_cols=88  Identities=13%  Similarity=0.110  Sum_probs=50.9

Q ss_pred             CCCceEecCCCeEEEEEEEeeecC--CeeeeeeC--CeeeeeccceEEEe--ecCCCCCceeEeeeccCCccceeecccc
Q psy12426          8 HLGDIKLSAGTTLKFDANIIGEPV--PHVDWRAG--GNPLNLRPIWEKCA--QTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~g~P~--p~v~W~~~--~~~l~~~G~Y~C~a--~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      +.-.-.|++|++|+|+|.++|.-.  -.+.|+|.  |+.|.--|.+.+.-  .+...+-+++++.-.           ..
T Consensus         6 eSG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSr-----------D~   74 (125)
T d1op3h1           6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSR-----------DD   74 (125)
T ss_dssp             EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEE-----------ET
T ss_pred             eECCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEec-----------cC
Confidence            344567899999999999998554  34889984  44332111110000  000111122222100           00


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEE
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ......|++.+|+++|...|.|...
T Consensus        75 s~~t~~Lqm~sL~~eDTAvYYCAr~   99 (125)
T d1op3h1          75 LEDFVYLQMHKMRVEDTAIYYCARK   99 (125)
T ss_dssp             TTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceEeeeeeccCCccceeEeEeec
Confidence            2334578999999999999999865

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.32  E-value=0.00038  Score=51.86  Aligned_cols=86  Identities=16%  Similarity=0.149  Sum_probs=51.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeecCC------CCCceeEeeeccCCcccee
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQTEG------DTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n~~------~~~~~~v~~~~~~~~p~w~   76 (616)
                      .+.....+++|++|+|.|.++|.-.-  .+.|+|.  |+.|.--|.    .....      .+.+++++.-.+       
T Consensus         5 ~esG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~----i~~~~~~~~y~~~~kgR~Tis~D-------   73 (127)
T d2fb4h1           5 VQSGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAI----IWDDGSDQHYADSVKGRFTISRN-------   73 (127)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEE----ECTTSSCEEECGGGBTTEEEEEE-------
T ss_pred             eeECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeee----cccccccchhcccccceEEEecc-------
Confidence            34456678999999999999986553  4889984  333321000    00000      001122221100       


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                          .......|++.+|+++|.+.|.|....
T Consensus        74 ----~s~~t~yL~~~~L~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          74 ----DSKNTLFLQMDSLRPEDTGVYFCARDG  100 (127)
T ss_dssp             ----TTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ----CCccEEEeeeeeeeecceeEEEEEEec
Confidence                023345789999999999999998663

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.32  E-value=0.00066  Score=49.80  Aligned_cols=71  Identities=11%  Similarity=0.107  Sum_probs=50.5

Q ss_pred             CCcceEEEcCCeEEEEEEEeeecCceeEEEECC--ee---e---------cccCcEEEEecCCceEEEecCCCCCCcEEE
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGEPIPTKEWLCND--IT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y  287 (616)
                      .|..+.+.+|++++|.|.... ....+.|++-.  ..   +         ....++.....+....|.|.+++++|++.|
T Consensus         6 sP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (104)
T d1yqvl1           6 SPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATY   84 (104)
T ss_dssp             ESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeE
Confidence            356678999999999998654 34468898731  11   0         012344555556678999999999999999


Q ss_pred             EEEEEc
Q psy12426        288 TLAVKN  293 (616)
Q Consensus       288 ~c~a~n  293 (616)
                      .|.+..
T Consensus        85 yCa~~~   90 (104)
T d1yqvl1          85 YCQQWG   90 (104)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            997643

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.31  E-value=0.00019  Score=51.68  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=45.8

Q ss_pred             EecCCCeEEEEEEEeeecC--CeeeeeeC--CeeeeeccceEEE-eecCCCCCceeEeeeccCCccceeeccccCCCCCc
Q psy12426         13 KLSAGTTLKFDANIIGEPV--PHVDWRAG--GNPLNLRPIWEKC-AQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTPK   87 (616)
Q Consensus        13 ~v~~g~~v~l~C~~~g~P~--p~v~W~~~--~~~l~~~G~Y~C~-a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~~   87 (616)
                      .|++|++++|+|.++|.-.  -.+.|+|.  |+-|.--|.+.+. ..+...+.+++++.-.+           .......
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd-----------~s~n~~~   72 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRD-----------NAKKTVY   72 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEEC-----------TTTCCEE
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecC-----------CceeEEE
Confidence            4689999999999988543  34789985  3333211110000 00001112223221111           1233457


Q ss_pred             eEecCcccCCeEEEEEEEE
Q psy12426         88 GKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        88 l~i~~l~~~~~~~y~c~a~  106 (616)
                      |+|.+|+++|.+.|.|...
T Consensus        73 L~i~~l~~eDtAvYyCA~~   91 (107)
T d1sjva_          73 LEMNSLEPEDTAVYYCYTH   91 (107)
T ss_dssp             EEECSCCGGGCSEEEEEEC
T ss_pred             EeecCCCcccceeeeEecc
Confidence            9999999999999999753

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.31  E-value=0.0006  Score=50.89  Aligned_cols=71  Identities=15%  Similarity=0.160  Sum_probs=50.9

Q ss_pred             CcceEEEcCCeEEEEEEEeee---c---CceeEEEEC--Ceee------------cccCcEEEEecCCceEEEecCCCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGE---P---IPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRG  282 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~---p---~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~  282 (616)
                      |..+.+.+|++++|.|...+.   .   ...+.|++.  +..+            ....++.....+....|.|.+++++
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~   87 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAE   87 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccC
Confidence            456788999999999987642   1   124889873  2211            1224555655666789999999999


Q ss_pred             CcEEEEEEEEc
Q psy12426        283 DSGIYTLAVKN  293 (616)
Q Consensus       283 ~~g~y~c~a~n  293 (616)
                      |++.|.|.+..
T Consensus        88 Dsa~YyCA~~~   98 (113)
T d1q9ra1          88 DLAVYYCKQSY   98 (113)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCeEEEecccC
Confidence            99999998753

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.31  E-value=0.00026  Score=52.93  Aligned_cols=82  Identities=11%  Similarity=0.117  Sum_probs=49.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeee---c---CCeeeeeeC--Ceeeee--ccceEEEeecCCCCCceeEeeeccCCcccee
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGE---P---VPHVDWRAG--GNPLNL--RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~---P---~p~v~W~~~--~~~l~~--~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~   76 (616)
                      +.|..+.+.+|++|+|.|..++.   .   ...+.|||.  |+.+..  ....    ....+.+.. ..           
T Consensus         6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~----~~~~~~~~~-~s-----------   69 (113)
T d1q9ra1           6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWAS----TRESGVPDR-FT-----------   69 (113)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTT----EECTTSCTT-EE-----------
T ss_pred             ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEeccc----ccCCCCCcc-EE-----------
Confidence            45889999999999999986642   2   134999984  332221  0000    000110100 00           


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                       .. .......|.|.+++++|++.|.|.+.
T Consensus        70 -~~-~s~~~~~L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          70 -GS-GSGTDFTLTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             -EE-EETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             -Ee-CCCCeEeEEecccccCCCeEEEeccc
Confidence             00 02234579999999999999999764

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.00048  Score=50.85  Aligned_cols=83  Identities=14%  Similarity=0.047  Sum_probs=48.0

Q ss_pred             CCceEecCCCeEEEEEEEeee--cCCeeeeeeC--CeeeeeccceEEEeecCCCC-----CceeEeeeccCCccceeecc
Q psy12426          9 LGDIKLSAGTTLKFDANIIGE--PVPHVDWRAG--GNPLNLRPIWEKCAQTEGDT-----PKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~--P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~-----~~~~v~~~~~~~~p~w~~~~   79 (616)
                      .+..++++|++|+|.|..++.  ..-.+.|+|.  |+....    ... .+....     .++++..           ..
T Consensus         2 e~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~----li~-~~~~~~~~~~~~~gR~si-----------s~   65 (110)
T d1u9ka_           2 EERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLT----LVV-TQRPFTRPSEVHMGKFTL-----------KH   65 (110)
T ss_dssp             CEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEE----EEE-CCSSTTSCEEEEETTEEE-----------EE
T ss_pred             CCCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEE----EEe-cCCCceeechhhCcEEEE-----------EE
Confidence            356789999999999998764  4446889995  321110    000 000000     0111110           00


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ........|+|.+|+.+|++.|.|....
T Consensus        66 d~~~~~~~lti~~L~~eDsa~YyCa~~~   93 (110)
T d1u9ka_          66 DPSEAMLQVQMTDLQVTDSGLYRCVIYH   93 (110)
T ss_dssp             EGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ECCCCEEEEEECccccCCCEEEEEEEeC
Confidence            0122345689999999999999998753

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.30  E-value=0.00042  Score=51.63  Aligned_cols=81  Identities=11%  Similarity=0.128  Sum_probs=48.2

Q ss_pred             CCceEecCCCeEEEEEEEeeec--CCeeeeeeC--Ceeeee-ccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEP--VPHVDWRAG--GNPLNL-RPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P--~p~v~W~~~--~~~l~~-~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      |..+.|.+|++|+|.|...+.-  ...+.|||.  ++.+.. ...+   .....+ ...++..         .+    ..
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~---~~~~~~-~~~r~~~---------~~----~~   69 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYEN---NERPSG-IPDRFSG---------SK----SG   69 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTT---TBCCTT-CCTTEEE---------EE----ET
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeec---CCCccc-cccceee---------eC----CC
Confidence            4589999999999999876533  345999974  222211 0000   000000 0001110         00    12


Q ss_pred             CCCceEecCcccCCeEEEEEEEE
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....|.|.+++++|++.|.|.+.
T Consensus        70 ~~~~L~I~~~~~~Dsa~YyCA~~   92 (111)
T d1rzfl1          70 TSATLGITGLQTGDEADYYCGTW   92 (111)
T ss_dssp             TEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CEeeeEEeeeccccCcceEEeec
Confidence            34689999999999999999876

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.29  E-value=0.00027  Score=52.07  Aligned_cols=88  Identities=15%  Similarity=0.128  Sum_probs=50.0

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeecC--CCCCceeEeeeccCCccceeeccc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQTE--GDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n~--~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      .+.-...|++|++|+|+|.++|....  .+.|+|.  |+.|.--|.......+.  ..+.+++++.-.+           
T Consensus         5 ~eSG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD-----------   73 (121)
T d2p49b1           5 VESGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRD-----------   73 (121)
T ss_dssp             EEEECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECT-----------
T ss_pred             eeECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeec-----------
Confidence            33446678999999999999987654  4789985  33332111100000000  0001222221100           


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEE
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLA  105 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a  105 (616)
                      .......|.+.+|+.+|.+.|.|..
T Consensus        74 ~s~~t~yLq~~~L~~eDtAvYYCAr   98 (121)
T d2p49b1          74 KGKNTVYLQMDSLKPEDTATYYCAA   98 (121)
T ss_dssp             TSTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCceEEEEEeeeccccceeEEeeec
Confidence            1233456899999999999999975

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00038  Score=50.02  Aligned_cols=92  Identities=12%  Similarity=0.017  Sum_probs=0.0

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      +|.+..+ |.. .|..|++|+|.|.....+.-.+.|+|+|....                                ....
T Consensus         5 kP~Lsa~-P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~--------------------------------~~~~   50 (96)
T d1ucta2           5 KPFLSAD-RGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSL--------------------------------PQHQ   50 (96)
T ss_dssp             CCEEEES-SCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSC--------------------------------CSEE
T ss_pred             CCEEEEe-CCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccc--------------------------------eEEc


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEcCCCCCCCCCCCCcceeecC
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVNKGGPGEPSDPTAPHIARAK  126 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n~~g~~~~~~~~~~~~~~~~  126 (616)
                      .......+.|.++.+.|.|.|+|.-.........+.+.........
T Consensus        51 ~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~~p~~~S~~Sd~leL~VT   96 (96)
T d1ucta2          51 SGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVT   96 (96)
T ss_dssp             ECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC
T ss_pred             CCCcccEEEEeccccccCcEEEEEEEcCCCCCCccCCCCCEEEEEC

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.29  E-value=0.00025  Score=52.40  Aligned_cols=82  Identities=13%  Similarity=0.118  Sum_probs=49.2

Q ss_pred             CCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCCCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGDTP   86 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~~~   86 (616)
                      |..+.+.+|++|+|.|.........+.|||.  |+.+..      .......         .+.+.+.-+... ......
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~------l~y~~~~---------~~~~~~~rf~~~-~~~~~~   69 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILL------LIYMDNK---------RPSGIPERFSGS-TSGTTA   69 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEE------EEBTTTB---------CCTTSCTTEEEE-EETTEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceee------ecccccc---------ccccccceeeec-CCCCEe
Confidence            6689999999999999876555557999984  322221      0000000         000111100000 012346


Q ss_pred             ceEecCcccCCeEEEEEEEE
Q psy12426         87 KGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        87 ~l~i~~l~~~~~~~y~c~a~  106 (616)
                      .|.|.+|+++|++.|.|.+.
T Consensus        70 ~L~I~~l~~~Dsa~YyCA~~   89 (108)
T d1nfde1          70 TLTISGAQPEDEAAYYCLSS   89 (108)
T ss_dssp             EEEETTCCGGGCSEEEEEEE
T ss_pred             eeeEcCccccCCceEEEEee
Confidence            89999999999999999876

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0002  Score=51.15  Aligned_cols=79  Identities=10%  Similarity=0.097  Sum_probs=51.0

Q ss_pred             CccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCCeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecccc
Q psy12426          2 PHIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGGNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQT   81 (616)
Q Consensus         2 P~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~   81 (616)
                      |.|-.. |.. .|..|++|+|.|... .+.-.+.++|+|......     .                           ..
T Consensus         5 PsLsa~-P~~-~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~-----~---------------------------~~   49 (93)
T d1olla2           5 PTLSVH-PGP-EVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQ-----R---------------------------GY   49 (93)
T ss_dssp             CEEEEE-SCS-EEETTCEEEEEEECS-SSCSEEEEEEESSSCEEE-----E---------------------------EE
T ss_pred             CEEEEe-CCC-cccCCCcEEEEECCC-CCCCEEEEEECCCcccee-----e---------------------------cC
Confidence            555433 444 478999999999854 344478899988643310     0                           00


Q ss_pred             CCCCCceEecCcccCCeEEEEEEEEc-CCCCCCCC
Q psy12426         82 EGDTPKGKVLDLIEGNQYEFRVLAVN-KGGPGEPS  115 (616)
Q Consensus        82 ~~~~~~l~i~~l~~~~~~~y~c~a~n-~~g~~~~~  115 (616)
                      ......+.|.++.+.+.|.|+|.... ...-+++|
T Consensus        50 ~~~~a~F~i~~v~~~~~G~Y~C~~~~~~~~wS~~S   84 (93)
T d1olla2          50 GKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPS   84 (93)
T ss_dssp             CSSEEEEEEEECCGGGCEEEEEECEEETTEECCCC
T ss_pred             CCceeEEEecccChhcCceEEEEeECCCCCcCCCC
Confidence            12346789999999999999997542 22234444

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.29  E-value=0.00091  Score=50.13  Aligned_cols=75  Identities=16%  Similarity=0.195  Sum_probs=50.5

Q ss_pred             CCcceEEEcCCeEEEEEEEeee-cCceeEEEEC--Cee---ec----------ccCcEE--EEecCCceEEEecCCCCCC
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGE-PIPTKEWLCN--DIT---II----------SKDRFK--IVNDDKSTKLKVFDSKRGD  283 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~-p~~~~~W~~~--~~~---~~----------~~~~~~--~~~~~~~~~l~i~~l~~~~  283 (616)
                      .+..+.+.+|++++|.|..... ....+.|++-  +..   +.          ...+..  ....+....|.|.+++++|
T Consensus         6 ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (114)
T d2ak4d1           6 AQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVD   85 (114)
T ss_dssp             CCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             cCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccccc
Confidence            3456789999999999986543 3446889872  221   10          011222  2233456789999999999


Q ss_pred             cEEEEEEEEcCCC
Q psy12426        284 SGIYTLAVKNSWG  296 (616)
Q Consensus       284 ~g~y~c~a~n~~g  296 (616)
                      +|.|.|.+....+
T Consensus        86 sg~YyCa~~~~~~   98 (114)
T d2ak4d1          86 SAVYFCALSGFYN   98 (114)
T ss_dssp             CEEEEEEEECSBT
T ss_pred             CCCceEeCCCCCC
Confidence            9999998876443

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00027  Score=53.06  Aligned_cols=71  Identities=18%  Similarity=0.240  Sum_probs=52.0

Q ss_pred             CcceEEEcCCeEEEEEEEeeec-CceeEEEECC----ee-e--c-------------ccCcEEEEecCCceEEEecCCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP-IPTKEWLCND----IT-I--I-------------SKDRFKIVNDDKSTKLKVFDSKR  281 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p-~~~~~W~~~~----~~-~--~-------------~~~~~~~~~~~~~~~l~i~~l~~  281 (616)
                      |....+..|++++|.|.+.... ...+.|+|-.    .. +  .             ...++.....+....|+|.++++
T Consensus         7 P~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~   86 (114)
T d1akjd_           7 PLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRR   86 (114)
T ss_dssp             CCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCG
T ss_pred             CCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCC
Confidence            4566788999999999987654 3468999822    11 1  0             12355555566678999999999


Q ss_pred             CCcEEEEEEEEc
Q psy12426        282 GDSGIYTLAVKN  293 (616)
Q Consensus       282 ~~~g~y~c~a~n  293 (616)
                      +|+|.|.|.+..
T Consensus        87 ~Dsg~YyCa~~~   98 (114)
T d1akjd_          87 ENEGYYFCSALS   98 (114)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCEEEeEeEcC
Confidence            999999999875

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=0.00011  Score=54.01  Aligned_cols=91  Identities=12%  Similarity=0.007  Sum_probs=50.8

Q ss_pred             CCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEe-ecCCCCCceeEeeeccCCccceeeccc
Q psy12426          6 RRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCA-QTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a-~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      +.+.-...|++|++|+|+|.++|...-  .+.|+|.  |+.+.--|.+.+.. .+...+.+++++.-.           .
T Consensus         4 L~eSg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~-----------D   72 (116)
T d1fn4b1           4 LLESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISR-----------D   72 (116)
T ss_dssp             CEEECCSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEE-----------E
T ss_pred             EEeECCceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEcc-----------c
Confidence            334445678999999999999997654  4789984  44433211110000 000000011111100           0


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      .......|++.+|+++|...|.|....
T Consensus        73 ~s~~tv~L~~~~L~~eDTAvYyCAr~~   99 (116)
T d1fn4b1          73 TSKNQVFLKMNSLQTDDTGTYYCTRDL   99 (116)
T ss_dssp             GGGTEEECCEESCCCCCCEEEEEEEEC
T ss_pred             cccchhhcceeccCCCCCEEEEEEeec
Confidence            022345688999999999999997653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.28  E-value=0.00049  Score=51.16  Aligned_cols=83  Identities=8%  Similarity=0.050  Sum_probs=49.4

Q ss_pred             CCCCceEecCCCeEEEEEEEeeec-----CCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeecc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEP-----VPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCA   79 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P-----~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~   79 (616)
                      +.|..+.+.+|++|+|.|.+++..     ...+.||+.  |+.+..      ......         -.+.|.|..+...
T Consensus         6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~------l~~~~~---------~~~~g~~~~fs~~   70 (112)
T d1ncwl1           6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKR------LIYLGT---------KLDSGVPDRFTGS   70 (112)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEE------EEETTT---------EECTTCCTTEEEE
T ss_pred             CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEE------EEeccC---------cCCCCcCceEEee
Confidence            347889999999999999876533     245899975  333221      000000         0001111111110


Q ss_pred             ccCCCCCceEecCcccCCeEEEEEEE
Q psy12426         80 QTEGDTPKGKVLDLIEGNQYEFRVLA  105 (616)
Q Consensus        80 ~~~~~~~~l~i~~l~~~~~~~y~c~a  105 (616)
                       .......|.|.+++++|++.|.|..
T Consensus        71 -~~~~~~~L~I~~~~~eDsAvYYC~~   95 (112)
T d1ncwl1          71 -GSGTDFTLKISRVEAEDLGVYYCWQ   95 (112)
T ss_dssp             -EETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             -CCCCEEEEEECccccCcCEeEEEEc
Confidence             1233568999999999999999954

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.27  E-value=0.00091  Score=50.37  Aligned_cols=74  Identities=23%  Similarity=0.377  Sum_probs=53.0

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Ceeec-----------------ccCcEEEEe-cCCceEEEecCCCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITII-----------------SKDRFKIVN-DDKSTKLKVFDSKRG  282 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~~~-----------------~~~~~~~~~-~~~~~~l~i~~l~~~  282 (616)
                      |..+.+.+|++++|.|...+.....+.|+|-  +..+.                 ...++.+.. .+....|.|.+++++
T Consensus         8 P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   87 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPE   87 (118)
T ss_dssp             CSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGG
T ss_pred             CCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccc
Confidence            4557789999999999987776678999982  22110                 123444443 334567999999999


Q ss_pred             CcEEEEEEEEcCCC
Q psy12426        283 DSGIYTLAVKNSWG  296 (616)
Q Consensus       283 ~~g~y~c~a~n~~g  296 (616)
                      |++.|.|.+....|
T Consensus        88 Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          88 DSGFYVCSALAGSG  101 (118)
T ss_dssp             GCEEEEEEEECSSC
T ss_pred             cCceEEEEEecCCC
Confidence            99999999876443

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.26  E-value=0.00063  Score=50.77  Aligned_cols=71  Identities=13%  Similarity=0.177  Sum_probs=52.2

Q ss_pred             cceEEEcCCeEEEEEEEeeec---CceeEEEEC--Cee---e---------cccCcEEEEecCCceEEEecCCCCCCcEE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEP---IPTKEWLCN--DIT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGI  286 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p---~~~~~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~  286 (616)
                      ..+.+.+|++++|.|...+..   ...+.|++-  +..   +         ....++..........|.|.+++++|++.
T Consensus         8 ~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   87 (112)
T d1lgva1           8 ASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEAD   87 (112)
T ss_dssp             SEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEE
Confidence            457889999999999877542   235889972  211   1         11245556666677899999999999999


Q ss_pred             EEEEEEcC
Q psy12426        287 YTLAVKNS  294 (616)
Q Consensus       287 y~c~a~n~  294 (616)
                      |.|.+.+.
T Consensus        88 YyCa~~~~   95 (112)
T d1lgva1          88 YYCSSYDG   95 (112)
T ss_dssp             EEEEEECS
T ss_pred             EEEeeecC
Confidence            99988754

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.26  E-value=0.00021  Score=52.59  Aligned_cols=91  Identities=12%  Similarity=0.096  Sum_probs=52.4

Q ss_pred             CCCCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEeecC----CCCCceeEeeeccCCcccee
Q psy12426          5 DRRHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQTE----GDTPKGKVLDLIEGNHPIWE   76 (616)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~n~----~~~~~~~v~~~~~~~~p~w~   76 (616)
                      .+.+.....+++|++|+|+|.++|.-..  .+.|+|.  |+.|.--|.+.+.-.+.    ..+.+++++.-.+       
T Consensus         3 ~L~eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD-------   75 (121)
T d1nfdf1           3 YLVESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRD-------   75 (121)
T ss_dssp             EEEEECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEEC-------
T ss_pred             eEeeECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccc-------
Confidence            3445667789999999999999986654  3789984  44443111100000000    0001112211000       


Q ss_pred             eccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         77 KCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        77 ~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                          .......|.+.+|+++|.+.|.|...
T Consensus        76 ----~s~nt~yL~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          76 ----DSRNSIYLQMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             ----TTTSEEEEEEESCCGGGCEECEEEEE
T ss_pred             ----cccceeeceecccCCCcceEEEEecc
Confidence                02334568999999999999999764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.26  E-value=0.00033  Score=52.72  Aligned_cols=71  Identities=15%  Similarity=0.220  Sum_probs=49.6

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEE--CCee---ec------------ccCcEEEEecCCceEEEecCCCCCCcE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLC--NDIT---II------------SKDRFKIVNDDKSTKLKVFDSKRGDSG  285 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~--~~~~---~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g  285 (616)
                      +..+.+.+|++++|.|.........+.|++  .+..   +.            ...+......+....|.|.+++++|+|
T Consensus         7 ~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSA   86 (115)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCE
T ss_pred             CCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccc
Confidence            345789999999999998776666788987  2221   10            011222222344578999999999999


Q ss_pred             EEEEEEEc
Q psy12426        286 IYTLAVKN  293 (616)
Q Consensus       286 ~y~c~a~n  293 (616)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (115)
T d1i9ea_          87 VYFCAVSG   94 (115)
T ss_dssp             EEEEEEEE
T ss_pred             eecccccC
Confidence            99998764

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.24  E-value=0.0011  Score=49.08  Aligned_cols=71  Identities=18%  Similarity=0.162  Sum_probs=50.8

Q ss_pred             CcceEEEcCCeEEEEEEEeeec-----CceeEEEEC--Ceee------------cccCcEEEEecCCceEEEecCCCCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP-----IPTKEWLCN--DITI------------ISKDRFKIVNDDKSTKLKVFDSKRGD  283 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p-----~~~~~W~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~  283 (616)
                      |..+.+.+|++++|.|..++..     ...+.|++.  +..+            ....++.....+....|.|.+++++|
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD   87 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED   87 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence            4567899999999999876532     235889873  2221            11245555556667899999999999


Q ss_pred             cEEEEEEEEc
Q psy12426        284 SGIYTLAVKN  293 (616)
Q Consensus       284 ~g~y~c~a~n  293 (616)
                      ++.|.|...+
T Consensus        88 sAvYYC~~~~   97 (112)
T d1ncwl1          88 LGVYYCWQGT   97 (112)
T ss_dssp             CEEEEEEECS
T ss_pred             CEeEEEEcCC
Confidence            9999996543

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.24  E-value=0.00019  Score=51.81  Aligned_cols=42  Identities=14%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeee-c-CCeeeeeeCCeeee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGE-P-VPHVDWRAGGNPLN   44 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P-~p~v~W~~~~~~l~   44 (616)
                      ||++.......  +..++.++|.|.|.|. | ...|+|.+||+.+.
T Consensus         3 PP~V~v~~~~~--~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~   46 (98)
T d1hdmb1           3 PPSVQVAKTTP--FNTREPVMLACYVWGFYPAEVTITWRKNGKLVM   46 (98)
T ss_dssp             CCEEEEEECCC--CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCEEEEEcCCC--ccCCCcEEEEEEEEEEECCCCEEEEEECCEecc
Confidence            57665432222  4667899999999995 4 45799999998774

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.24  E-value=0.00024  Score=53.27  Aligned_cols=91  Identities=11%  Similarity=0.005  Sum_probs=51.2

Q ss_pred             ccCCCCCCceEecCCCeEEEEEEEeeecCCeeeeeeCC--eeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccc
Q psy12426          3 HIDRRHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGG--NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQ   80 (616)
Q Consensus         3 ~i~~~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~   80 (616)
                      .|+ +.|..+.+.+|++|+|.|..... ...+.|||..  +.+..  .+  ...+..     ..   ..+..+.-+....
T Consensus         3 ~Vt-Q~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~--l~--~~~~~~-----~~---~~~~~~~~~~~~~   68 (113)
T d1nfdb1           3 GVV-QSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKF--LI--QHYEKV-----ER---DKGFLPSRFSVQQ   68 (113)
T ss_dssp             SCE-EECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEE--EE--EEETTT-----EE---EESSCCTTCCCEE
T ss_pred             CEE-EcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcc--ee--eeeecc-----cc---cCCCcccceeeEc
Confidence            454 45889999999999999985432 3579999853  22211  00  000000     00   0000011000001


Q ss_pred             cCCCCCceEecCcccCCeEEEEEEEEc
Q psy12426         81 TEGDTPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        81 ~~~~~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      .......|+|.+++++|++.|.|.+..
T Consensus        69 ~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          69 FDDYHSEMNMSALELEDSAMYFCASSL   95 (113)
T ss_dssp             CTTSCEEEECCSCCGGGCEEECEEEES
T ss_pred             CCCCeEEEEecccCcCCceeEEEEeec
Confidence            122245789999999999999998763

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.24  E-value=0.0017  Score=48.52  Aligned_cols=72  Identities=18%  Similarity=0.273  Sum_probs=49.9

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Ceee------------cccCcEEE--EecCCceEEEecCCCCCCcEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DITI------------ISKDRFKI--VNDDKSTKLKVFDSKRGDSGI  286 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~~------------~~~~~~~~--~~~~~~~~l~i~~l~~~~~g~  286 (616)
                      |..+.+.+|++++|.|...+. ...+.|++-  +..+            ....++..  ........|.|.+++++|++.
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL   85 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence            456789999999999987654 447889872  2110            01123322  233456799999999999999


Q ss_pred             EEEEEEcCC
Q psy12426        287 YTLAVKNSW  295 (616)
Q Consensus       287 y~c~a~n~~  295 (616)
                      |.|.+....
T Consensus        86 YyCa~~~~~   94 (115)
T d1ogad1          86 YLCAGAGSQ   94 (115)
T ss_dssp             EEEEEECTT
T ss_pred             EcccccCCC
Confidence            999887543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=0.00046  Score=52.44  Aligned_cols=85  Identities=18%  Similarity=0.203  Sum_probs=52.4

Q ss_pred             CCcceEEEcCCeEEEEEEEeee----cCceeEEEECC--e----eec----------c----cCcEEEEe--cCCceEEE
Q psy12426        222 QLSDIKVRAGSNFEFDINVIGE----PIPTKEWLCND--I----TII----------S----KDRFKIVN--DDKSTKLK  275 (616)
Q Consensus       222 ~~~~~~v~~g~~~~l~c~~~~~----p~~~~~W~~~~--~----~~~----------~----~~~~~~~~--~~~~~~l~  275 (616)
                      .+..+.+..|++++|.|.....    ....+.|++..  .    .+.          .    ..|+.+..  .....+|.
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence            3567889999999999987532    23378998621  1    010          0    12333321  22345899


Q ss_pred             ecCCCCCCcEEEEEEEEcCCCCc--eeeEEEEE
Q psy12426        276 VFDSKRGDSGIYTLAVKNSWGTD--KGTAKVTV  306 (616)
Q Consensus       276 i~~l~~~~~g~y~c~a~n~~g~~--~~~~~l~v  306 (616)
                      |.+++..|+|.|.|.+.+..+..  .....|.|
T Consensus        85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            99999999999999998854433  33344444

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00019  Score=52.31  Aligned_cols=79  Identities=8%  Similarity=0.046  Sum_probs=50.3

Q ss_pred             CCceeccCCcceEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcE-EEEecCCceEEEecCCCCCCcEEEEEEEEc
Q psy12426        215 SPYINRDQLSDIKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRF-KIVNDDKSTKLKVFDSKRGDSGIYTLAVKN  293 (616)
Q Consensus       215 ~P~~~~~~~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n  293 (616)
                      .|.+... +. ..|..|++++|.|... .+...+.|++++......... ..........+.|.++...|.|.|+|...+
T Consensus         7 kPsLsa~-P~-~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~   83 (99)
T d1ucta1           7 MPFISAK-SS-PVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI   83 (99)
T ss_dssp             CCCEEES-SC-SEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCEEEec-CC-CceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEEC
Confidence            4555332 23 4588999999999764 345578888876432111111 111223345799999999999999999887


Q ss_pred             CCC
Q psy12426        294 SWG  296 (616)
Q Consensus       294 ~~g  296 (616)
                      ...
T Consensus        84 ~~~   86 (99)
T d1ucta1          84 GHY   86 (99)
T ss_dssp             TTT
T ss_pred             CCc
Confidence            554

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.23  E-value=0.0008  Score=48.27  Aligned_cols=64  Identities=20%  Similarity=0.253  Sum_probs=45.6

Q ss_pred             CCeEEEEEEEeeecCceeEEEEC--Cee---e--------cccCcEEEE--ecCCceEEEecCCCCCCcEEEEEEEEcC
Q psy12426        231 GSNFEFDINVIGEPIPTKEWLCN--DIT---I--------ISKDRFKIV--NDDKSTKLKVFDSKRGDSGIYTLAVKNS  294 (616)
Q Consensus       231 g~~~~l~c~~~~~p~~~~~W~~~--~~~---~--------~~~~~~~~~--~~~~~~~l~i~~l~~~~~g~y~c~a~n~  294 (616)
                      |++++|.|.........+.|++-  +..   +        ....++...  ......+|.|.+++++|++.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            67899999988777778999872  111   1        112344443  2344578999999999999999998753

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.22  E-value=0.00055  Score=50.97  Aligned_cols=70  Identities=16%  Similarity=0.204  Sum_probs=51.6

Q ss_pred             ceEEEcCCeEEEEEEEeeec--CceeEEEEC--Cee---e---------cccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        225 DIKVRAGSNFEFDINVIGEP--IPTKEWLCN--DIT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p--~~~~~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      .+.+.+|++++|.|...+..  ...+.|++-  +..   +         ....++.....+....|.|.+++++|++.|.
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY   88 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceE
Confidence            47888999999999886543  335889873  111   1         1124566666677789999999999999999


Q ss_pred             EEEEcC
Q psy12426        289 LAVKNS  294 (616)
Q Consensus       289 c~a~n~  294 (616)
                      |.+...
T Consensus        89 CA~~~~   94 (111)
T d1rzfl1          89 CGTWDS   94 (111)
T ss_dssp             EEEEET
T ss_pred             EeecCC
Confidence            988753

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0003  Score=50.65  Aligned_cols=68  Identities=9%  Similarity=-0.067  Sum_probs=47.1

Q ss_pred             eEEEcCCeEEEEEEEeeecCceeEEEECCeeecccCcEEEEecCCceEEEecCCCCCCcEEEEEEEEcCC
Q psy12426        226 IKVRAGSNFEFDINVIGEPIPTKEWLCNDITIISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLAVKNSW  295 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~a~n~~  295 (616)
                      ..|..|++|+|.|... .....+.|++++........ .....+....|.|.++...+.|.|+|...+..
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1          13 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             SEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-ccCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            3578999999999863 33557888898764321110 00112334589999999999999999987643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.22  E-value=0.0012  Score=49.62  Aligned_cols=73  Identities=21%  Similarity=0.223  Sum_probs=51.1

Q ss_pred             CcceEEEcCCeEEEEEEEeee-cCceeEEEE--CCee---ec------------ccCcEEEEec--CCceEEEecCCCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGE-PIPTKEWLC--NDIT---II------------SKDRFKIVND--DKSTKLKVFDSKRG  282 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~-p~~~~~W~~--~~~~---~~------------~~~~~~~~~~--~~~~~l~i~~l~~~  282 (616)
                      +..+.+.+|++++|.|..... ....+.|++  .+..   +.            ...|+.+...  .....|+|.+++.+
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   86 (116)
T d1tvda_           7 SPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTE   86 (116)
T ss_dssp             SCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             CCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccc
Confidence            456789999999999988654 456789987  2221   10            1235554432  33468999999999


Q ss_pred             CcEEEEEEEEcCC
Q psy12426        283 DSGIYTLAVKNSW  295 (616)
Q Consensus       283 ~~g~y~c~a~n~~  295 (616)
                      |+|.|.|.+....
T Consensus        87 Dsg~YyCa~~~~~   99 (116)
T d1tvda_          87 DSATYYCAFTLPP   99 (116)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             ccccceeeEecCC
Confidence            9999999887643

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.00027  Score=51.31  Aligned_cols=31  Identities=10%  Similarity=0.145  Sum_probs=25.0

Q ss_pred             ecCCCeEEEEEEEeee-cC-CeeeeeeCCeeee
Q psy12426         14 LSAGTTLKFDANIIGE-PV-PHVDWRAGGNPLN   44 (616)
Q Consensus        14 v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~l~   44 (616)
                      +..|+.++|.|.+.|. |. ..|+|.+||+.+.
T Consensus        15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~   47 (99)
T d1lk2b_          15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP   47 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT
T ss_pred             ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecC
Confidence            3568899999999985 43 4689999999775

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.21  E-value=0.00049  Score=50.55  Aligned_cols=83  Identities=7%  Similarity=0.051  Sum_probs=49.0

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeCC--eeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAGG--NPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~~--~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|++|+|.|..... ...+.|||..  +.+..    ...  ...         ....+.+.-..... ...
T Consensus         5 QsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~----~~~--~~~---------~~~~~~~~~f~~~~-~~~   67 (104)
T d1yqvl1           5 QSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKR----WIY--DTS---------KLASGVPVRFSGSG-SGT   67 (104)
T ss_dssp             EESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEE----EEE--TTT---------EECTTCCTTEEEEE-ETT
T ss_pred             CcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEE----EEe--ccc---------ccCCCcCceEEEec-CCC
Confidence            55889999999999999986543 4468999852  11110    000  000         00001111000000 223


Q ss_pred             CCceEecCcccCCeEEEEEEEE
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ..+|.|.+++++|++.|.|.+.
T Consensus        68 ~~~L~I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          68 SYSLTISSMETEDAATYYCQQW   89 (104)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEEecccCcccCCeEEEEec
Confidence            4679999999999999999754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.21  E-value=0.00065  Score=50.10  Aligned_cols=70  Identities=17%  Similarity=0.199  Sum_probs=52.2

Q ss_pred             ceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---e---------cccCcEEEEecCCceEEEecCCCCCCcEEEEEE
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIYTLA  290 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c~  290 (616)
                      .+.+.+|++++|.|.........+.|++-  +..   +         ....++.....+....|.|.+++++|++.|.|.
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence            46788999999999876555567899973  221   1         012455566667778999999999999999999


Q ss_pred             EEcC
Q psy12426        291 VKNS  294 (616)
Q Consensus       291 a~n~  294 (616)
                      +...
T Consensus        89 ~~~~   92 (109)
T d1w72l1          89 VWDS   92 (109)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            8753

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.20  E-value=0.0009  Score=49.78  Aligned_cols=70  Identities=14%  Similarity=0.207  Sum_probs=50.7

Q ss_pred             CcceEEEcCCeEEEEEEEeeec-----CceeEEEEC--Cee---e---------cccCcEEEEecCCceEEEecCCCCCC
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP-----IPTKEWLCN--DIT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGD  283 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p-----~~~~~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~  283 (616)
                      +..+.+.+|++++|.|..++..     ...+.|++.  |..   +         ....++.....+....|.|.+++++|
T Consensus         8 p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~D   87 (112)
T d1mjul1           8 APSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAED   87 (112)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccC
Confidence            4557788999999999987642     346889863  221   1         01235666666777899999999999


Q ss_pred             cEEEEEEEE
Q psy12426        284 SGIYTLAVK  292 (616)
Q Consensus       284 ~g~y~c~a~  292 (616)
                      ++.|.|...
T Consensus        88 sAvYyCa~~   96 (112)
T d1mjul1          88 VGVYYCLQH   96 (112)
T ss_dssp             CEEEEEEEC
T ss_pred             CceEEEEeC
Confidence            999999643

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.20  E-value=0.00088  Score=50.07  Aligned_cols=88  Identities=8%  Similarity=0.026  Sum_probs=50.3

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCCC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEGD   84 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~~   84 (616)
                      +.|..+.+.+|++|+|.|.... -...+.|||.  |+.+..-  +  . .+..+...       ..+.+..+........
T Consensus         5 QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l--~--~-~~~~~~~~-------~~~~~~~~~~~~~~~~   71 (113)
T d1j8he1           5 QSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLI--Y--F-SYDVKMKE-------KGDIPEGYSVSREKKE   71 (113)
T ss_dssp             ESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEE--E--E-ESSTTCCE-------ECSCCTTEEEECSSTT
T ss_pred             ccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCccee--e--e-eeeeeeee-------cccccccceEEeccCc
Confidence            4588899999999999998542 2457999984  3323210  0  0 00000000       0000000111111233


Q ss_pred             CCceEecCcccCCeEEEEEEEEc
Q psy12426         85 TPKGKVLDLIEGNQYEFRVLAVN  107 (616)
Q Consensus        85 ~~~l~i~~l~~~~~~~y~c~a~n  107 (616)
                      ...|.|.++.++|++.|.|.+..
T Consensus        72 ~~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          72 RFSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             BCEEEESSCCGGGCEEEEEEEEC
T ss_pred             EeeeEeccCccCCcccEEeeEcc
Confidence            46799999999999999998863

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.19  E-value=0.00036  Score=50.68  Aligned_cols=42  Identities=21%  Similarity=0.300  Sum_probs=30.1

Q ss_pred             CCccCCCCCCceEecCCCeEEEEEEEeee-cC-CeeeeeeCCeeee
Q psy12426          1 APHIDRRHLGDIKLSAGTTLKFDANIIGE-PV-PHVDWRAGGNPLN   44 (616)
Q Consensus         1 ~P~i~~~~~~~~~v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~l~   44 (616)
                      ||.+..-++..  +..|+.++|.|.+.|. |. ..|+|++||+.+.
T Consensus         5 ~P~V~v~~~~~--~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~   48 (101)
T d1fnga1           5 APEVTVLSRSP--VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVT   48 (101)
T ss_dssp             CCEEEEEESSC--CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCeEEEeCCCc--ccCCCCEEEEEEEEeEECCCCEEEEEECCeecC
Confidence            56664332333  3567889999999985 54 4799999999875

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.19  E-value=0.00051  Score=51.08  Aligned_cols=71  Identities=13%  Similarity=0.098  Sum_probs=50.7

Q ss_pred             CcceEEEcCCeEEEEEEEeeec----CceeEEEEC--Cee---e---------cccCcEEEEecCCceEEEecCCCCCCc
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP----IPTKEWLCN--DIT---I---------ISKDRFKIVNDDKSTKLKVFDSKRGDS  284 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p----~~~~~W~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~l~~~~~  284 (616)
                      |..+.+.+|++++|.|......    ...+.|++-  +..   +         ....++.....+....|.|.+++++|+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence            4556788999999999875422    224889872  322   1         012355556566778999999999999


Q ss_pred             EEEEEEEEc
Q psy12426        285 GIYTLAVKN  293 (616)
Q Consensus       285 g~y~c~a~n  293 (616)
                      +.|.|.+.+
T Consensus        88 a~YyCa~~~   96 (111)
T d1j05a_          88 ATYYCQQTN   96 (111)
T ss_dssp             EEEEEEECS
T ss_pred             ccEEEeecC
Confidence            999998754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00071  Score=49.88  Aligned_cols=72  Identities=10%  Similarity=0.081  Sum_probs=50.6

Q ss_pred             eEEEcCCeEEEEEEEeeec----CceeEEEECCeeecc------------cCcEEEEecCCceEEEecCCCCCCcEEEEE
Q psy12426        226 IKVRAGSNFEFDINVIGEP----IPTKEWLCNDITIIS------------KDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  289 (616)
Q Consensus       226 ~~v~~g~~~~l~c~~~~~p----~~~~~W~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c  289 (616)
                      +....|+++.|.|......    ...+.|.+++..+..            ..+..... .+..+|.|.+++.+|+|.|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcCChHHCeEEEE
Confidence            5678999999999765432    136788888765421            12333332 234689999999999999999


Q ss_pred             EEEcCCCCc
Q psy12426        290 AVKNSWGTD  298 (616)
Q Consensus       290 ~a~n~~g~~  298 (616)
                      .+.+..+..
T Consensus        83 ~V~~~~~~~   91 (105)
T d1dr9a1          83 VVLKYEKDA   91 (105)
T ss_dssp             EEEECCTTS
T ss_pred             EEEeCCCCC
Confidence            998754444

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.18  E-value=0.00041  Score=51.93  Aligned_cols=83  Identities=13%  Similarity=0.151  Sum_probs=51.2

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCC--eeeeeeC--CeeeeeccceEEEee-----cC-----CCCCceeEeeeccCCc
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVP--HVDWRAG--GNPLNLRPIWEKCAQ-----TE-----GDTPKGKVLDLIEGNH   72 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p--~v~W~~~--~~~l~~~G~Y~C~a~-----n~-----~~~~~~~v~~~~~~~~   72 (616)
                      .+.-.-.|++|++|+|+|.++|...-  .+.|+|.  |+.|.      +.+.     +.     ..+.+++++.-.+   
T Consensus         5 ~esG~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkgle------wv~~i~~~~~~~~~~ya~s~kgR~tiS~D---   75 (131)
T d3c2ah1           5 VESGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLE------WVGRIKSRTDGGTTDYAASVKGRFTISRD---   75 (131)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE------EEEEECCGGGTCCEEECTTTTTTEEEEEE---
T ss_pred             eeECCceECCCCCeEEEEEECCCCCcCCcccccccCCCccce------ecccccccccccchhhccceeEEEEEecc---
Confidence            34456678999999999999986654  5889985  33332      1111     00     0112222221100   


Q ss_pred             cceeeccccCCCCCceEecCcccCCeEEEEEEEE
Q psy12426         73 PIWEKCAQTEGDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        73 p~w~~~~~~~~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                              .......|.+.+|+++|...|.|...
T Consensus        76 --------~s~nt~~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          76 --------DSKNTLYLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             --------GGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             --------cccceeecceeccccCCceEEEEecc
Confidence                    02334578999999999999999876

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00039  Score=52.59  Aligned_cols=85  Identities=7%  Similarity=-0.099  Sum_probs=48.6

Q ss_pred             CCceEecCCCeEEEEEEEeeecCC---eeeeeeCCe--eeeeccceEEEeecCCCCCceeEeeeccCCccceeeccccCC
Q psy12426          9 LGDIKLSAGTTLKFDANIIGEPVP---HVDWRAGGN--PLNLRPIWEKCAQTEGDTPKGKVLDLIEGNHPIWEKCAQTEG   83 (616)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~g~P~p---~v~W~~~~~--~l~~~G~Y~C~a~n~~~~~~~~v~~~~~~~~p~w~~~~~~~~   83 (616)
                      |..+.+.+|+.|+|.|.....-.+   .+.|||...  .+..    .....+....+..         .+.-........
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~----~~~~~~~~~~~~~---------~~~~~~~~~~~~   72 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEV----CAATYMMGNELTF---------LDDSICTGTSSG   72 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEE----EEEEEETTSCCCC---------CSSCSCCCCBCS
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEE----EEEEeCCCCEecc---------cCCcEEeEcCCC
Confidence            778899999999999996533322   488998642  2211    0000111000000         000000011123


Q ss_pred             CCCceEecCcccCCeEEEEEEEE
Q psy12426         84 DTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        84 ~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      ....|.|.+|+..|.+.|.|.+.
T Consensus        73 ~~~~L~I~~l~~~Dsa~YyCa~~   95 (118)
T d1i8lc_          73 NQVNLTIQGLRAMDTGLYICKVE   95 (118)
T ss_dssp             SEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CEEEEEeeccccCCCEEEEEeEe
Confidence            34579999999999999999876

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.16  E-value=0.00077  Score=50.29  Aligned_cols=71  Identities=13%  Similarity=0.126  Sum_probs=49.9

Q ss_pred             CcceEEEcCCeEEEEEEEeeec-CceeEEEEC--Ceeec------------ccCcEEEEecCCceEEEecCCCCCCcEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEP-IPTKEWLCN--DITII------------SKDRFKIVNDDKSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p-~~~~~W~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y  287 (616)
                      |..+.+.+|++++|.|...+.. ...+.|+|-  +..+.            ...++.+..+.....|.|.+++++|++.|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            3457789999999999987654 345899982  22210            11233444445567899999999999999


Q ss_pred             EEEEEc
Q psy12426        288 TLAVKN  293 (616)
Q Consensus       288 ~c~a~n  293 (616)
                      .|.+..
T Consensus        85 yCa~~~   90 (112)
T d1kgcd1          85 YCILPL   90 (112)
T ss_dssp             EEECCC
T ss_pred             eeeEec
Confidence            998754

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.16  E-value=0.00083  Score=50.10  Aligned_cols=85  Identities=9%  Similarity=0.076  Sum_probs=49.8

Q ss_pred             CCCCceEecCCCeEEEEEEEeeecCCeeeeeeC--CeeeeeccceEEEeecC--CCCCceeEeeeccCCccceeeccccC
Q psy12426          7 RHLGDIKLSAGTTLKFDANIIGEPVPHVDWRAG--GNPLNLRPIWEKCAQTE--GDTPKGKVLDLIEGNHPIWEKCAQTE   82 (616)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~g~P~p~v~W~~~--~~~l~~~G~Y~C~a~n~--~~~~~~~v~~~~~~~~p~w~~~~~~~   82 (616)
                      +.|....+.+|++|+|.|..+.. ...+.|||.  |+.+..  .+.....+.  .+.....           .. .....
T Consensus         4 Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~--l~~~~~~~~~~~~~~~~~-----------~~-~~~~~   68 (112)
T d2bnub1           4 QTPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRL--IHYSVGAGITDQGEVPNG-----------YN-VSRST   68 (112)
T ss_dssp             EECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEE--EEEEEETTEEEECSSCTT-----------CE-ECCSS
T ss_pred             ECCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccc--eeeEeccCceecCccccc-----------ee-EecCC
Confidence            45788899999999999986533 457999983  332221  000000000  0000000           00 00112


Q ss_pred             CCCCceEecCcccCCeEEEEEEEE
Q psy12426         83 GDTPKGKVLDLIEGNQYEFRVLAV  106 (616)
Q Consensus        83 ~~~~~l~i~~l~~~~~~~y~c~a~  106 (616)
                      .....|.|.++.+.|++.|.|.+.
T Consensus        69 ~~~~~L~I~~~~~~DsavYyCA~~   92 (112)
T d2bnub1          69 TEDFPLRLLSAAPSQTSVYFCASS   92 (112)
T ss_dssp             SSBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHCEEEEEeec
Confidence            234589999999999999999876

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.16  E-value=0.00087  Score=49.50  Aligned_cols=69  Identities=14%  Similarity=0.182  Sum_probs=51.2

Q ss_pred             ceEEEcCCeEEEEEEEeeecCc---eeEEEE--CCeee------------cccCcEEEEecCCceEEEecCCCCCCcEEE
Q psy12426        225 DIKVRAGSNFEFDINVIGEPIP---TKEWLC--NDITI------------ISKDRFKIVNDDKSTKLKVFDSKRGDSGIY  287 (616)
Q Consensus       225 ~~~v~~g~~~~l~c~~~~~p~~---~~~W~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~l~~~~~g~y  287 (616)
                      .+.+.+|++++|.|...+....   .+.|++  .+..+            ....++.....+....|.|.+++++|++.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            4678899999999999754332   388987  22221            012466666667788999999999999999


Q ss_pred             EEEEEc
Q psy12426        288 TLAVKN  293 (616)
Q Consensus       288 ~c~a~n  293 (616)
                      .|.+..
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            999865

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.14  E-value=0.00034  Score=52.66  Aligned_cols=71  Identities=14%  Similarity=0.109  Sum_probs=51.4

Q ss_pred             CcceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEEE
Q psy12426        223 LSDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYT  288 (616)
Q Consensus       223 ~~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~  288 (616)
                      |..+.+.+|++++|.|.....-...+.|++-  +..   +.         ...++.....+....|.|.+++++|++.|.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy   87 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF   87 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence            3456788999999999887655567899983  111   11         123455554555678999999999999999


Q ss_pred             EEEEc
Q psy12426        289 LAVKN  293 (616)
Q Consensus       289 c~a~n  293 (616)
                      |.+..
T Consensus        88 Ca~~~   92 (119)
T d1f3rb2          88 CYQYN   92 (119)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            98764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00035  Score=50.64  Aligned_cols=31  Identities=19%  Similarity=0.301  Sum_probs=25.4

Q ss_pred             ecCCCeEEEEEEEeee-cC-CeeeeeeCCeeee
Q psy12426         14 LSAGTTLKFDANIIGE-PV-PHVDWRAGGNPLN   44 (616)
Q Consensus        14 v~~g~~v~l~C~~~g~-P~-p~v~W~~~~~~l~   44 (616)
                      +..|+.++|.|.|.|. |. ..|+|.+||..+.
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~   48 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIE   48 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECT
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECCEecC
Confidence            3578999999999995 44 3689999999875

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.13  E-value=0.00054  Score=50.55  Aligned_cols=70  Identities=17%  Similarity=0.232  Sum_probs=52.1

Q ss_pred             cceEEEcCCeEEEEEEEeeecCceeEEEEC--Cee---ec---------ccCcEEEEecCCceEEEecCCCCCCcEEEEE
Q psy12426        224 SDIKVRAGSNFEFDINVIGEPIPTKEWLCN--DIT---II---------SKDRFKIVNDDKSTKLKVFDSKRGDSGIYTL  289 (616)
Q Consensus       224 ~~~~v~~g~~~~l~c~~~~~p~~~~~W~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~l~~~~~g~y~c  289 (616)
                      ..+.+.+|++++|.|.........+.|++-  +..   +.         ...++.....+....|.|.+++++|++.|.|
T Consensus         7 ~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyC   86 (108)
T d1nfde1           7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYC   86 (108)
T ss_dssp             SEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEE
T ss_pred             CeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEE
Confidence            346788999999999876555557889872  221   11         1245666666677899999999999999999


Q ss_pred             EEEc
Q psy12426        290 AVKN  293 (616)
Q Consensus       290 ~a~n  293 (616)
                      .+..
T Consensus        87 A~~~   90 (108)
T d1nfde1          87 LSSY   90 (108)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            8864