Psyllid ID: psy12437
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 901 | 2.2.26 [Sep-21-2011] | |||||||
| O95487 | 1268 | Protein transport protein | yes | N/A | 0.700 | 0.497 | 0.518 | 0.0 | |
| A6QNT8 | 1099 | Protein transport protein | no | N/A | 0.700 | 0.574 | 0.508 | 0.0 | |
| Q3U2P1 | 1090 | Protein transport protein | yes | N/A | 0.700 | 0.578 | 0.511 | 0.0 | |
| O95486 | 1093 | Protein transport protein | no | N/A | 0.700 | 0.577 | 0.507 | 0.0 | |
| Q4P9K4 | 995 | Protein transport protein | N/A | N/A | 0.699 | 0.633 | 0.366 | 1e-110 | |
| Q9SFU0 | 1038 | Protein transport protein | yes | N/A | 0.673 | 0.584 | 0.370 | 1e-109 | |
| Q2HH63 | 947 | Protein transport protein | N/A | N/A | 0.697 | 0.663 | 0.337 | 1e-104 | |
| Q7S4P3 | 950 | Protein transport protein | N/A | N/A | 0.699 | 0.663 | 0.338 | 1e-103 | |
| Q1E6U9 | 932 | Protein transport protein | N/A | N/A | 0.699 | 0.675 | 0.337 | 1e-101 | |
| A1CUC3 | 919 | Protein transport protein | N/A | N/A | 0.697 | 0.683 | 0.333 | 1e-100 |
| >sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo sapiens GN=SEC24B PE=1 SV=2 | Back alignment and function desciption |
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Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/634 (51%), Positives = 454/634 (71%), Gaps = 3/634 (0%)
Query: 270 EIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQ 329
++ E+F+Y+ T +G+P++RPE+Q++TVE++A++DY +R PPQPA+YLF+LDVS A +
Sbjct: 634 DVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLR-PPQPAVYLFVLDVSHNAVE 692
Query: 330 SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389
+GYL +C+ LL L +PGD RT I +T+DS +HFY+L EG +QP +I++DIDD+FL
Sbjct: 693 AGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFL 752
Query: 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQ 449
P+P+++LVNL E ++I DLL LP F ++ ++ SALGPALQAAFKL+ PTGGR+++FQ
Sbjct: 753 PTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPTGGRVSVFQ 812
Query: 450 TCLPNRGPGALQSRENPNQRSNDDP-PHMNPATDFYKKIALECTSFYIAVDLFILNSQYV 508
T LP+ G G LQSRE+PNQRS+ H+ PATDFYKK+AL+C+ AVDLF+L+SQY
Sbjct: 813 TQLPSLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYS 872
Query: 509 DLATLSGVSKFSSGCIHHIP-LYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGM 567
DLA+L+ +SK+S+GCI++ P + N S +L + RYLTRKIGFE+VMRIRCTKG+
Sbjct: 873 DLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGL 932
Query: 568 SIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRR 627
S+HTFHGNFFVRSTDLL+L N+NPDAG+ +Q+SI+E+LT CFQ A+LYTSSKG+RR
Sbjct: 933 SMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLYTSSKGERR 992
Query: 628 IRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLST 687
IRVHTLCLPVVS++ DV G D LLA MAVDRS+ SLSDAR+A +N V D LS
Sbjct: 993 IRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSA 1052
Query: 688 YKMTQAGHLTGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNS 747
Y T + +L+APSSLK+ PLYVLALLK AFR G STRLDDR++AM ++K PL
Sbjct: 1053 YGSTVSNLQHSALMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVH 1112
Query: 748 LMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVR 807
LM I+P LY I L + + N+ VP P + +LSAE+L G +L++ + I V
Sbjct: 1113 LMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPPLQKLSAEKLTREGAFLMDCGSVFYIWVG 1172
Query: 808 HGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKD 867
G + G+ + A +P+ + LP+L+T S + SFI++L D + + ++KD
Sbjct: 1173 KGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSPILHIVKD 1232
Query: 868 SSPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901
SP + EF+ LIED+ +YYEFLL +++Q+
Sbjct: 1233 ESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQI 1266
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Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex. Homo sapiens (taxid: 9606) |
| >sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus GN=SEC24A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus musculus GN=Sec24a PE=1 SV=1 | Back alignment and function description |
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| >sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo sapiens GN=SEC24A PE=1 SV=2 | Back alignment and function description |
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| >sp|Q4P9K4|SEC24_USTMA Protein transport protein SEC24 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC24 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100 OS=Arabidopsis thaliana GN=At3g07100 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q2HH63|SEC24_CHAGB Protein transport protein SEC24 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SEC24 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q7S4P3|SEC24_NEUCR Protein transport protein sec-24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sec-24 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q1E6U9|SEC24_COCIM Protein transport protein SEC24 OS=Coccidioides immitis (strain RS) GN=SEC24 PE=3 SV=2 | Back alignment and function description |
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| >sp|A1CUC3|SEC24_ASPCL Protein transport protein sec24 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=sec24 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 901 | ||||||
| 380028803 | 884 | PREDICTED: protein transport protein Sec | 0.699 | 0.712 | 0.560 | 0.0 | |
| 340726998 | 884 | PREDICTED: protein transport protein Sec | 0.699 | 0.712 | 0.560 | 0.0 | |
| 383851333 | 1053 | PREDICTED: protein transport protein Sec | 0.699 | 0.598 | 0.560 | 0.0 | |
| 328783563 | 784 | PREDICTED: protein transport protein Sec | 0.699 | 0.803 | 0.558 | 0.0 | |
| 307188358 | 1223 | Protein transport protein Sec24B [Campon | 0.701 | 0.516 | 0.553 | 0.0 | |
| 350414265 | 884 | PREDICTED: protein transport protein Sec | 0.699 | 0.712 | 0.556 | 0.0 | |
| 307192121 | 645 | Protein transport protein Sec24B [Harpeg | 0.702 | 0.981 | 0.562 | 0.0 | |
| 332025517 | 789 | Protein transport protein Sec24B [Acromy | 0.701 | 0.801 | 0.547 | 0.0 | |
| 156546847 | 1271 | PREDICTED: protein transport protein Sec | 0.699 | 0.495 | 0.536 | 0.0 | |
| 189236467 | 1217 | PREDICTED: similar to Sec24B protein, pu | 0.700 | 0.518 | 0.548 | 0.0 |
| >gi|380028803|ref|XP_003698076.1| PREDICTED: protein transport protein Sec24B-like [Apis florea] | Back alignment and taxonomy information |
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Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/632 (56%), Positives = 480/632 (75%), Gaps = 2/632 (0%)
Query: 270 EIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQ 329
E+ E+F +D T+ +GDP RRPE++++T+E++A+++Y +R PPQPA+YLF+LDVS++A +
Sbjct: 254 ELPEEFQFDPVTKSYGDPSRRPEVKTSTIEFIASSEYMLR-PPQPAVYLFVLDVSRLAVE 312
Query: 330 SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389
SGYL TVC V+ +L +PGD RT I + DSA+HF+ + + +QP +MI+ DIDD+FL
Sbjct: 313 SGYLNTVCNVISEELSRLPGDSRTQIGFLAVDSAIHFFGIPDNVSQPQEMIMLDIDDVFL 372
Query: 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQ 449
P PEN++VNL E +++ DLL QLP KF+ + D+ SALG ALQAA+KL+ PTGGR+T+FQ
Sbjct: 373 PCPENLIVNLKEREELVRDLLTQLPIKFQGTHDTNSALGAALQAAYKLMSPTGGRVTVFQ 432
Query: 450 TCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 509
TCLPN GPG LQ+RE+PN R++ D PH+NP TDFYK++AL+C+ IAVDLF+LN QY D
Sbjct: 433 TCLPNLGPGLLQAREDPNNRASKDVPHLNPVTDFYKRLALDCSGQQIAVDLFLLNCQYCD 492
Query: 510 LATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSI 569
L+T+SG+ KFS GCI+H+PL+ HV LDR+ RYLTRKIGFE+VMRIRCT+G+SI
Sbjct: 493 LSTISGMCKFSGGCIYHLPLFRASKPQHVETLDRILRRYLTRKIGFEAVMRIRCTRGLSI 552
Query: 570 HTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIR 629
HTFHGNFFVRSTDLL+LPNVNPDAG+G+QISI+ENL+ +Q CFQ A+LYTSSKG+RRIR
Sbjct: 553 HTFHGNFFVRSTDLLSLPNVNPDAGFGMQISIEENLSDVQNVCFQAALLYTSSKGERRIR 612
Query: 630 VHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYK 689
VHTLCLPVVS ++DVL ADQ CI GLL+KMAVDRS Q S+SDAR+A +NV DVLS YK
Sbjct: 613 VHTLCLPVVSTLSDVLHSADQQCIVGLLSKMAVDRSQQSSISDARDALINVAIDVLSAYK 672
Query: 690 MTQAGHLTGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLM 749
++Q+ +G LLAP+SLK+LPLY++ALLK AFR G STRLDDR+FAM ++K +PL L+
Sbjct: 673 LSQSA-TSGGLLAPASLKLLPLYIIALLKCVAFRSGTSTRLDDRVFAMCQLKTIPLFQLI 731
Query: 750 LSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHG 809
IYP+LYPIH L+ + + P P L LSAE+L + G +L++ D I IL+
Sbjct: 732 QMIYPDLYPIHALEDRNAKDIDGKLCPQPPRLHLSAEKLDSRGAFLMDTGDQIFILIGKN 791
Query: 810 TSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSS 869
P+ C + G + +PE +ELP++ET S +L +F+ L ++K Y + +++I+D S
Sbjct: 792 IHPSFCCNVLGVSAFPSIPEEFYELPEIETTESERLRNFVFSLQEEKPYPASIQIIRDDS 851
Query: 870 PDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901
R F ++LIED+ ++YYEFL ++ QV
Sbjct: 852 HFRTLFVERLIEDRFENSLSYYEFLQHLKTQV 883
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Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340726998|ref|XP_003401838.1| PREDICTED: protein transport protein Sec24B-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|383851333|ref|XP_003701188.1| PREDICTED: protein transport protein Sec24B-like [Megachile rotundata] | Back alignment and taxonomy information |
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| >gi|328783563|ref|XP_394884.3| PREDICTED: protein transport protein Sec24B-like [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|307188358|gb|EFN73133.1| Protein transport protein Sec24B [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|350414265|ref|XP_003490260.1| PREDICTED: protein transport protein Sec24B-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|307192121|gb|EFN75449.1| Protein transport protein Sec24B [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|332025517|gb|EGI65680.1| Protein transport protein Sec24B [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|156546847|ref|XP_001606431.1| PREDICTED: protein transport protein Sec24B-like [Nasonia vitripennis] | Back alignment and taxonomy information |
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| >gi|189236467|ref|XP_974325.2| PREDICTED: similar to Sec24B protein, putative [Tribolium castaneum] gi|270005372|gb|EFA01820.1| hypothetical protein TcasGA2_TC007422 [Tribolium castaneum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 901 | ||||||
| FB|FBgn0033460 | 1184 | sec24 "sec24" [Drosophila mela | 0.698 | 0.531 | 0.520 | 4.8e-183 | |
| UNIPROTKB|A6QNT8 | 1099 | SEC24A "Protein transport prot | 0.700 | 0.574 | 0.494 | 9e-180 | |
| UNIPROTKB|F1RHC7 | 1144 | SEC24A "Uncharacterized protei | 0.700 | 0.551 | 0.492 | 1.9e-179 | |
| UNIPROTKB|J9P4C3 | 1100 | SEC24A "Uncharacterized protei | 0.700 | 0.573 | 0.494 | 3.8e-179 | |
| UNIPROTKB|E1BSA7 | 1100 | SEC24A "Uncharacterized protei | 0.700 | 0.573 | 0.496 | 3.4e-178 | |
| MGI|MGI:1924621 | 1090 | Sec24a "Sec24 related gene fam | 0.700 | 0.578 | 0.497 | 4.4e-178 | |
| UNIPROTKB|J9PAS8 | 1258 | SEC24B "Uncharacterized protei | 0.698 | 0.5 | 0.512 | 9e-178 | |
| UNIPROTKB|O95486 | 1093 | SEC24A "Protein transport prot | 0.700 | 0.577 | 0.492 | 1.2e-177 | |
| UNIPROTKB|B7ZKM8 | 1298 | SEC24B "SEC24B protein" [Homo | 0.698 | 0.484 | 0.507 | 1.9e-177 | |
| RGD|1309451 | 1089 | Sec24a "SEC24 family, member A | 0.700 | 0.579 | 0.491 | 6.3e-177 |
| FB|FBgn0033460 sec24 "sec24" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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Score = 1699 (603.1 bits), Expect = 4.8e-183, Sum P(3) = 4.8e-183
Identities = 336/646 (52%), Positives = 451/646 (69%)
Query: 270 EIHEQFLYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQ 329
E+ + F +D T+ +GD RRPE++S+T+E++A ++Y +R PPQPAMYLFL DVS IA Q
Sbjct: 541 ELPDDFQFDPATKTYGDVTRRPEVRSSTIEFIAPSEYMLR-PPQPAMYLFLFDVSIIAQQ 599
Query: 330 SGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFL 389
SGYL C VL L MPGD RT + I +DS VHFYS+AEG QP +M L DI+D FL
Sbjct: 600 SGYLEAACAVLNRHLDEMPGDARTQVGFICFDSFVHFYSMAEGLNQPHEMTLLDIEDPFL 659
Query: 390 PSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQ 449
P P+++LVNL EC +++ DLLKQLP +F + D GSALG ALQ AFKL+Q +GGRIT+FQ
Sbjct: 660 PRPDSLLVNLKECKELVRDLLKQLPKRFAHTHDPGSALGAALQVAFKLMQASGGRITVFQ 719
Query: 450 TCLPNRGPGALQSRENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVD 509
+CLPN+GPGAL+ RE+PN RS D H+NPATDFYK+ ALEC+ + IA DLF++N QY D
Sbjct: 720 SCLPNKGPGALEPREDPNNRSAKDVAHLNPATDFYKRFALECSGYQIACDLFLMNQQYSD 779
Query: 510 LATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRM-FSRYLTRKIGFESVMRIRCTKGMS 568
+AT+SG+SK S GC+HH PLY K H+ + R F RYLTRKIGFE+VMRIRCT+G+
Sbjct: 780 MATISGISKHSGGCVHHFPLYQ-KTKPHMVESFRSCFKRYLTRKIGFEAVMRIRCTRGLQ 838
Query: 569 IHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRI 628
+HTFHGNFFVRSTDLL+LPNVNPDAGYG+QIS +E+LT + CFQ A+LYT+S+G+RRI
Sbjct: 839 VHTFHGNFFVRSTDLLSLPNVNPDAGYGMQISYEESLTDAKTICFQAALLYTNSEGERRI 898
Query: 629 RVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTY 688
RVHT+CLPV +++ +V+ AD I GLL+KMAVDRS+ +LSDAR+AF+N DV + +
Sbjct: 899 RVHTVCLPVTASLPEVMHSADTEAIIGLLSKMAVDRSVASNLSDARDAFINATIDVYNAF 958
Query: 689 KMTQ---AGHLTGSLLAPSSXXXXXXXXXXXXXHPAFRIGQSTRLDDRLFAMTEMKCLPL 745
K+ Q +G +G L+AP S HPAFR+G STRLDDR++AM MK LPL
Sbjct: 959 KIAQNLPSGQ-SGQLIAPRSLALLPLYILALLKHPAFRVGTSTRLDDRVYAMDCMKTLPL 1017
Query: 746 NSLMLSIYPELYPIHTL---DQDPTIEWNE-----LQVPIPRI--LQLSAERLQATGTYL 795
+ LM +YPELY I L ++ I N+ P+P + LQLSAE L + +L
Sbjct: 1018 DQLMKYVYPELYKIDALIYHARNSNISSNQDDDEDEDEPLPELPRLQLSAEHLDSRSIFL 1077
Query: 796 LNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDD 855
++ LI+I V P + + G S A++ + ++ LP + + + L FI LN D
Sbjct: 1078 MDCGTLIMIYVGLNVPPDVLEAVLGISSTAELGDYVYGLPNVVSNENDVLKRFILRLNYD 1137
Query: 856 KAYVSPVKVIKDSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901
K Y + V++I+D+S + +F ++L +D++ ++YYEFL IR QV
Sbjct: 1138 KPYSALVQIIRDTSTAKGQFTERLTDDRSESSLSYYEFLQHIRAQV 1183
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| UNIPROTKB|A6QNT8 SEC24A "Protein transport protein Sec24A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RHC7 SEC24A "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9P4C3 SEC24A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BSA7 SEC24A "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:1924621 Sec24a "Sec24 related gene family, member A (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9PAS8 SEC24B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O95486 SEC24A "Protein transport protein Sec24A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B7ZKM8 SEC24B "SEC24B protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|1309451 Sec24a "SEC24 family, member A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6CLE0 | SEC24_KLULA | No assigned EC number | 0.3225 | 0.6825 | 0.6655 | yes | N/A |
| Q6FWD3 | SC242_CANGA | No assigned EC number | 0.3271 | 0.6748 | 0.6710 | yes | N/A |
| P0CR40 | SEC24_CRYNJ | No assigned EC number | 0.3348 | 0.6992 | 0.6847 | yes | N/A |
| Q4WLP1 | SEC24_ASPFU | No assigned EC number | 0.3307 | 0.6970 | 0.6833 | yes | N/A |
| Q0PVD8 | SEC24_PICPA | No assigned EC number | 0.3156 | 0.6981 | 0.6552 | yes | N/A |
| Q75B16 | SEC24_ASHGO | No assigned EC number | 0.3181 | 0.6770 | 0.6846 | yes | N/A |
| Q86ZK8 | SEC24_PODAS | No assigned EC number | 0.3292 | 0.6992 | 0.6659 | yes | N/A |
| Q9UUI5 | SEC24_SCHPO | No assigned EC number | 0.3255 | 0.6981 | 0.6792 | yes | N/A |
| Q6BT80 | SEC24_DEBHA | No assigned EC number | 0.3115 | 0.6958 | 0.6785 | yes | N/A |
| A2QSG6 | SEC24_ASPNC | No assigned EC number | 0.3261 | 0.6970 | 0.6833 | yes | N/A |
| P40482 | SEC24_YEAST | No assigned EC number | 0.3153 | 0.6781 | 0.6598 | yes | N/A |
| Q2ULI0 | SEC24_ASPOR | No assigned EC number | 0.3307 | 0.6970 | 0.6878 | yes | N/A |
| Q875V7 | SC242_NAUCC | No assigned EC number | 0.3276 | 0.6714 | 0.6633 | yes | N/A |
| Q3U2P1 | SC24A_MOUSE | No assigned EC number | 0.5118 | 0.7003 | 0.5788 | yes | N/A |
| O95487 | SC24B_HUMAN | No assigned EC number | 0.5189 | 0.7003 | 0.4976 | yes | N/A |
| Q6C2T4 | SEC24_YARLI | No assigned EC number | 0.3206 | 0.6992 | 0.6745 | yes | N/A |
| Q5B6W0 | SEC24_EMENI | No assigned EC number | 0.3292 | 0.6970 | 0.6916 | yes | N/A |
| A3LRW3 | SEC24_PICST | No assigned EC number | 0.3214 | 0.6992 | 0.6945 | yes | N/A |
| Q54U61 | SEC24_DICDI | No assigned EC number | 0.3215 | 0.6781 | 0.6031 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 901 | |||
| COG5028 | 861 | COG5028, COG5028, Vesicle coat complex COPII, subu | 1e-122 | |
| cd01479 | 244 | cd01479, Sec24-like, Sec24-like: Protein and membr | 1e-100 | |
| cd01468 | 239 | cd01468, trunk_domain, trunk domain | 5e-79 | |
| pfam04811 | 241 | pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | 1e-72 | |
| pfam08033 | 86 | pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom | 2e-31 | |
| PTZ00395 | 1560 | PTZ00395, PTZ00395, Sec24-related protein; Provisi | 8e-31 | |
| pfam04815 | 103 | pfam04815, Sec23_helical, Sec23/Sec24 helical doma | 3e-24 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-10 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 7e-10 | |
| PLN00162 | 761 | PLN00162, PLN00162, transport protein sec23; Provi | 1e-07 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 8e-07 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-06 | |
| COG5047 | 755 | COG5047, SEC23, Vesicle coat complex COPII, subuni | 2e-06 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 8e-06 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-05 | |
| pfam11593 | 381 | pfam11593, Med3, Mediator complex subunit 3 fungal | 2e-05 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-05 | |
| cd01478 | 267 | cd01478, Sec23-like, Sec23-like: Protein and membr | 8e-05 | |
| pfam11498 | 476 | pfam11498, Activator_LAG-3, Transcriptional activa | 8e-05 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 1e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 1e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 1e-04 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 1e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 2e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 5e-04 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 5e-04 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 5e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 8e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.001 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.001 |
| >gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 391 bits (1007), Expect = e-122
Identities = 222/623 (35%), Positives = 349/623 (56%), Gaps = 17/623 (2%)
Query: 285 GDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQL 344
D Y RPE++S V++LA +Y++R PP P +Y+FL+DVS A ++G + +L L
Sbjct: 248 SDRYSRPELKSGVVDFLAPKEYSLRQPP-PPVYVFLIDVSFEAIKNGLVKAAIRAILENL 306
Query: 345 KSMPG-DRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPEN-ILVNLSEC 402
+P D RT IAII +DS++HF+ L+ +I++D+D+ FLP P ++ L C
Sbjct: 307 DQIPNFDPRTKIAIICFDSSLHFFKLSPD-LDEQMLIVSDLDEPFLPFPSGLFVLPLKSC 365
Query: 403 YDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQS 462
+I LL ++P F+D+ +ALGPAL+AA L+ TGG+I +F + LPN G G LQ
Sbjct: 366 KQIIETLLDRVPRIFQDNKSPKNALGPALKAAKSLIGGTGGKIIVFLSTLPNMGIGKLQL 425
Query: 463 RENPNQRSNDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSG 522
RE+ ++ FYK+ A+EC+ I+VDLF+ + Y+D+ATLS + +++ G
Sbjct: 426 REDKESS------LLSCKDSFYKEFAIECSKVGISVDLFLTSEDYIDVATLSHLCRYTGG 479
Query: 523 CIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTD 582
+ P +S + +L +L+ +IG+E+VMR+RC+ G+ + +F+GNFF RS+D
Sbjct: 480 QTYFYPNFSATRPNDATKLANDLVSHLSMEIGYEAVMRVRCSTGLRVSSFYGNFFNRSSD 539
Query: 583 LLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNIN 642
L A + D ++ SIDE L FQVA+LYT + G+RRIRV L LP S+I
Sbjct: 540 LCAFSTMPRDTSLLVEFSIDEKLMT-SDVYFQVALLYTLNDGERRIRVVNLSLPTSSSIR 598
Query: 643 DVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGSLLA 702
+V ADQ IA +LAK A ++L SL +AR + D+L YK T + L
Sbjct: 599 EVYASADQLAIACILAKKASTKALNSSLKEARVLINKSMVDILKAYKKELVKSNTSTQLP 658
Query: 703 -PSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHT 761
P++LK+LPL +LALLK AFR G ST D R+ A+ + LPL LM +IYP LY +H
Sbjct: 659 LPANLKLLPLLMLALLKSSAFRSG-STPSDIRISALNRLTSLPLKQLMRNIYPTLYALHD 717
Query: 762 LDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGF 821
+ +E + +P + ++ L++ G YL++ I + P++ LFG
Sbjct: 718 M-PIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDLFGV 776
Query: 822 QSVAQMPETLFELPQLETQLSLKLNSFIS--YLNDDKAYVSPVKVIKDSSPD-RMEFYDK 878
S++ +P F LP + + ++ + I +D + + V V P R+ F+
Sbjct: 777 DSLSDIPSGKFTLPPTGNEFNERVRNIIGELRSVNDDSTLPLVLVRGGGDPSLRLWFFST 836
Query: 879 LIEDKNAGGMAYYEFLLRIREQV 901
L+EDK +Y ++L + E++
Sbjct: 837 LVEDKTLNIPSYLDYLQILHEKI 859
|
Length = 861 |
| >gnl|CDD|238756 cd01479, Sec24-like, Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|238745 cd01468, trunk_domain, trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain | Back alignment and domain information |
|---|
| >gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain | Back alignment and domain information |
|---|
| >gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3 | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 901 | |||
| KOG1985|consensus | 887 | 100.0 | ||
| KOG1984|consensus | 1007 | 100.0 | ||
| PTZ00395 | 1560 | Sec24-related protein; Provisional | 100.0 | |
| PLN00162 | 761 | transport protein sec23; Provisional | 100.0 | |
| COG5028 | 861 | Vesicle coat complex COPII, subunit SEC24/subunit | 100.0 | |
| KOG1986|consensus | 745 | 100.0 | ||
| COG5047 | 755 | SEC23 Vesicle coat complex COPII, subunit SEC23 [I | 100.0 | |
| cd01479 | 244 | Sec24-like Sec24-like: Protein and membrane traffi | 100.0 | |
| cd01468 | 239 | trunk_domain trunk domain. COPII-coated vesicles c | 100.0 | |
| PF04811 | 243 | Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I | 100.0 | |
| cd01478 | 267 | Sec23-like Sec23-like: Protein and membrane traffi | 100.0 | |
| PF08033 | 96 | Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP | 99.83 | |
| PF04815 | 103 | Sec23_helical: Sec23/Sec24 helical domain; InterPr | 99.83 | |
| PRK13685 | 326 | hypothetical protein; Provisional | 98.72 | |
| cd01453 | 183 | vWA_transcription_factor_IIH_type Transcription fa | 98.62 | |
| cd01465 | 170 | vWA_subgroup VWA subgroup: Von Willebrand factor t | 98.58 | |
| cd01467 | 180 | vWA_BatA_type VWA BatA type: Von Willebrand factor | 98.58 | |
| cd01451 | 178 | vWA_Magnesium_chelatase Magnesium chelatase: Mg-ch | 98.57 | |
| cd01466 | 155 | vWA_C3HC4_type VWA C3HC4-type: Von Willebrand fact | 98.51 | |
| cd01463 | 190 | vWA_VGCC_like VWA Voltage gated Calcium channel li | 98.51 | |
| cd01456 | 206 | vWA_ywmD_type VWA ywmD type:Von Willebrand factor | 98.51 | |
| TIGR00868 | 863 | hCaCC calcium-activated chloride channel protein 1 | 98.45 | |
| TIGR03788 | 596 | marine_srt_targ marine proteobacterial sortase tar | 98.27 | |
| cd01452 | 187 | VWA_26S_proteasome_subunit 26S proteasome plays a | 98.27 | |
| cd01474 | 185 | vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxi | 98.27 | |
| cd01472 | 164 | vWA_collagen von Willebrand factor (vWF) type A do | 98.27 | |
| PF13519 | 172 | VWA_2: von Willebrand factor type A domain; PDB: 3 | 98.2 | |
| cd01470 | 198 | vWA_complement_factors Complement factors B and C2 | 98.2 | |
| TIGR03436 | 296 | acidobact_VWFA VWFA-related Acidobacterial domain. | 98.19 | |
| cd01461 | 171 | vWA_interalpha_trypsin_inhibitor vWA_interalpha tr | 98.17 | |
| PF13768 | 155 | VWA_3: von Willebrand factor type A domain | 98.09 | |
| cd01480 | 186 | vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI | 98.02 | |
| cd01475 | 224 | vWA_Matrilin VWA_Matrilin: In cartilaginous plate, | 97.93 | |
| cd01450 | 161 | vWFA_subfamily_ECM Von Willebrand factor type A (v | 97.92 | |
| cd01469 | 177 | vWA_integrins_alpha_subunit Integrins are a class | 97.91 | |
| cd01471 | 186 | vWA_micronemal_protein Micronemal proteins: The To | 97.91 | |
| PTZ00441 | 576 | sporozoite surface protein 2 (SSP2); Provisional | 97.91 | |
| cd01477 | 193 | vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand | 97.89 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 97.78 | |
| cd01482 | 164 | vWA_collagen_alphaI-XII-like Collagen: The extrace | 97.76 | |
| PF00626 | 76 | Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel | 97.74 | |
| cd01473 | 192 | vWA_CTRP CTRP for CS protein-TRAP-related protein: | 97.7 | |
| cd01481 | 165 | vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(V | 97.69 | |
| cd00198 | 161 | vWFA Von Willebrand factor type A (vWA) domain was | 97.68 | |
| smart00327 | 177 | VWA von Willebrand factor (vWF) type A domain. VWA | 97.59 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 97.58 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.51 | |
| PF00092 | 178 | VWA: von Willebrand factor type A domain; InterPro | 97.51 | |
| cd01476 | 163 | VWA_integrin_invertebrates VWA_integrin (invertebr | 97.46 | |
| COG1240 | 261 | ChlD Mg-chelatase subunit ChlD [Coenzyme metabolis | 97.39 | |
| cd01464 | 176 | vWA_subfamily VWA subfamily: Von Willebrand factor | 97.28 | |
| PF04056 | 193 | Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like pro | 97.24 | |
| cd01458 | 218 | vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heter | 97.08 | |
| smart00262 | 90 | GEL Gelsolin homology domain. Gelsolin/severin/vil | 96.95 | |
| cd01454 | 174 | vWA_norD_type norD type: Denitrifying bacteria con | 96.91 | |
| KOG2884|consensus | 259 | 96.83 | ||
| COG4245 | 207 | TerY Uncharacterized protein encoded in toxicity p | 96.51 | |
| cd01462 | 152 | VWA_YIEM_type VWA YIEM type: Von Willebrand factor | 96.17 | |
| COG5148 | 243 | RPN10 26S proteasome regulatory complex, subunit R | 95.24 | |
| KOG0443|consensus | 827 | 95.19 | ||
| TIGR00578 | 584 | ku70 ATP-dependent DNA helicase ii, 70 kDa subunit | 94.93 | |
| cd01460 | 266 | vWA_midasin VWA_Midasin: Midasin is a member of th | 94.91 | |
| cd01457 | 199 | vWA_ORF176_type VWA ORF176 type: Von Willebrand fa | 93.99 | |
| PF03850 | 276 | Tfb4: Transcription factor Tfb4; InterPro: IPR0046 | 93.57 | |
| TIGR00627 | 279 | tfb4 transcription factor tfb4. This family is bas | 93.16 | |
| cd01455 | 191 | vWA_F11C1-5a_type Von Willebrand factor type A (vW | 93.05 | |
| KOG4407|consensus | 1973 | 92.11 | ||
| PF03731 | 224 | Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; Inte | 91.66 | |
| KOG4274|consensus | 742 | 90.79 | ||
| KOG2807|consensus | 378 | 90.21 | ||
| PRK10997 | 487 | yieM hypothetical protein; Provisional | 89.78 | |
| KOG2353|consensus | 1104 | 88.07 | ||
| KOG3768|consensus | 888 | 87.61 | ||
| PF06707 | 205 | DUF1194: Protein of unknown function (DUF1194); In | 86.37 | |
| KOG0444|consensus | 1255 | 85.88 | ||
| PF09606 | 799 | Med15: ARC105 or Med15 subunit of Mediator complex | 85.7 | |
| KOG1151|consensus | 775 | 85.46 | ||
| KOG0443|consensus | 827 | 81.92 | ||
| KOG2487|consensus | 314 | 80.99 | ||
| PF09606 | 799 | Med15: ARC105 or Med15 subunit of Mediator complex | 80.64 |
| >KOG1985|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-135 Score=1144.05 Aligned_cols=633 Identities=49% Similarity=0.832 Sum_probs=604.4
Q ss_pred CcCccCccc---------ccCCCCCCCCCCCCccccccccEEEEecccccCCCCCCCcEEEEEEEcchhHHhhchHHHHH
Q psy12437 267 NLPEIHEQF---------LYDRNTEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVC 337 (901)
Q Consensus 267 ~~~~~p~~~---------~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~ 337 (901)
+.|.|..|+ .++++++.|+|...||||++++|||+||.||+.| +|+|++|||+||||..|+++|+|+.+|
T Consensus 239 r~WrCNlC~~~NdvP~~f~~~~~t~~~~~~~~RpEl~~s~vE~iAP~eYmlR-~P~Pavy~FliDVS~~a~ksG~L~~~~ 317 (887)
T KOG1985|consen 239 RRWRCNLCGRVNDVPDDFDWDPLTGAYGDPYSRPELTSSVVEFIAPSEYMLR-PPQPAVYVFLIDVSISAIKSGYLETVA 317 (887)
T ss_pred ceeeechhhhhcCCcHHhhcCccccccCCcccCccccceeEEEecCcccccC-CCCCceEEEEEEeehHhhhhhHHHHHH
Confidence 566666665 4666788899999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeeccCccccCCCCCCCcccchhhhHHHHHHHHHhCCccc
Q psy12437 338 EVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKF 417 (901)
Q Consensus 338 ~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~~dl~d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~ 417 (901)
++|++.||.||+++|++|||||||++||||++..++.+|+|++++|+||+|+|.|++|||+++|||+.|+.+|+.|+++|
T Consensus 318 ~slL~~LD~lpgd~Rt~igfi~fDs~ihfy~~~~~~~qp~mm~vsdl~d~flp~pd~lLv~L~~ck~~i~~lL~~lp~~F 397 (887)
T KOG1985|consen 318 RSLLENLDALPGDPRTRIGFITFDSTIHFYSVQGDLNQPQMMIVSDLDDPFLPMPDSLLVPLKECKDLIETLLKTLPEMF 397 (887)
T ss_pred HHHHHhhhcCCCCCcceEEEEEeeceeeEEecCCCcCCCceeeeccccccccCCchhheeeHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCCCCCCCCCC-CCCCCCCchHHHHHHHHHHHhhCCc
Q psy12437 418 KDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSN-DDPPHMNPATDFYKKIALECTSFYI 496 (901)
Q Consensus 418 ~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~~~~~~~~~-~~~~~~~~a~~fY~~la~~~~~~~i 496 (901)
.+++..++|+|+||++|.++|+.+||||++|.+++||.|.|+|+.||+++.++. ++..++.+++.|||+||.+|++.+|
T Consensus 398 ~~~~~t~~alGpALkaaf~li~~~GGri~vf~s~lPnlG~G~L~~rEdp~~~~s~~~~qlL~~~t~FYK~~a~~cs~~qI 477 (887)
T KOG1985|consen 398 QDTRSTGSALGPALKAAFNLIGSTGGRISVFQSTLPNLGAGKLKPREDPNVRSSDEDSQLLSPATDFYKDLALECSKSQI 477 (887)
T ss_pred hhccCcccccCHHHHHHHHHHhhcCCeEEEEeccCCCCCccccccccccccccchhhhhccCCCchHHHHHHHHhccCce
Confidence 999999999999999999999999999999999999999999999998887655 4567999999999999999999999
Q ss_pred EEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHHHHHHHHhhhcccccceeEEEEecCCceEEEEecce
Q psy12437 497 AVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNF 576 (901)
Q Consensus 497 svdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~~~dl~~~l~~~~g~~a~l~vr~S~gl~i~~~~G~~ 576 (901)
+||+|+++.+|.|||+|+.|+++|||.+|||++|+.+++.+..+|.+||.|+|+|++||+|+||||||+|++++++||||
T Consensus 478 ~VDlFl~s~qY~DlAsLs~LskySgG~~y~YP~f~~s~p~~~~Kf~~el~r~Ltr~~~feaVmRiR~S~gl~~~~f~GnF 557 (887)
T KOG1985|consen 478 CVDLFLFSEQYTDLASLSCLSKYSGGQVYYYPSFDGSNPHDVLKFARELARYLTRKIGFEAVMRIRCSTGLRMSSFFGNF 557 (887)
T ss_pred EEEEEeecccccchhhhhccccccCceeEEccCCCCCCHHHHHHHHHHHHHHhhhhhhhheeEEeeccccccccceeccc
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred eccCCCceeecCCCCCceEEEEEEEecccCCCceeEEEEEEEeeecCCCeEEEEEecccccccCHHHHHhccCHHHHHHH
Q psy12437 577 FVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGL 656 (901)
Q Consensus 577 ~~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allYt~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~a~~~~ 656 (901)
+.|++|++.++++++|.+++|++++++.+.. ...+||.|++||.+.|||||||||+++++++++.+||+++|++|++.+
T Consensus 558 F~RStDLla~~~v~~D~sy~~qisiEesl~~-~~~~fQvAlLyT~~~GERRIRV~T~~lpt~~sl~evY~saD~~AI~~l 636 (887)
T KOG1985|consen 558 FVRSTDLLALPNVNPDQSYAFQISIEESLTT-GFCVFQVALLYTLSKGERRIRVHTLCLPTVSSLNEVYASADQEAIASL 636 (887)
T ss_pred ccCcHHHhcccCCCCCccceEEEEeehhcCC-ceeEEEeeeeecccCCceeEEEEEeeccccccHHHHHhhcCHHHHHHH
Confidence 9999999999999999999999999999874 567799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCccccCcccCcHHHHHHHHhcCccccCCCCCChhHHH
Q psy12437 657 LAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHL--TGSLLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRL 734 (901)
Q Consensus 657 lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~--~~~l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~ 734 (901)
++++|+++.++.++.|+|+.|.+.+++++..|++.....+ ...|.+|.+|++||+|+++|+|+++||.+..++.|+|+
T Consensus 637 la~~Av~ksl~ssL~dardal~~~~~D~l~aYk~~~~~~~~~~~~l~~p~~LrllPllvlALlK~~~fr~g~~~~lD~R~ 716 (887)
T KOG1985|consen 637 LAKKAVEKSLSSSLSDARDALTNAVVDILNAYKKLVSNQNGQGITLSLPASLRLLPLLVLALLKHPAFRPGTGTRLDYRA 716 (887)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCcceecCcchhhhHHHHHHHhcCCcccCCCCCCchHHH
Confidence 9999999999999999999999999999999999765432 22499999999999999999999999999899999999
Q ss_pred HHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCccccccccccccCeEEEEeCCceEEEEecCCCChHH
Q psy12437 735 FAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPRILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAI 814 (901)
Q Consensus 735 ~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~ 814 (901)
|+++.++++++..++.+|||+||++|+++.+++....++.+++|+.++|+.+.++..|+||||+|..++||||+++++.+
T Consensus 717 ~a~~~~~~lpl~~L~k~IYP~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~l 796 (887)
T KOG1985|consen 717 YAMCLMSTLPLKYLMKYIYPTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSL 796 (887)
T ss_pred HHHHHhhcCCHHHHHhhhcccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCccc
Confidence 99999999999999999999999999999988877667778899999999999999999999999999999999999999
Q ss_pred HhcccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCcccEEEEeCCCc--cHHHHHHHhcccCCCCCCCHHH
Q psy12437 815 CSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYVSPVKVIKDSSP--DRMEFYDKLIEDKNAGGMAYYE 892 (901)
Q Consensus 815 ~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~~p~~iv~~~~~--~~~~f~~~LvED~~~~~~Sy~~ 892 (901)
+.++||++.+.+++.++.++|++|+++++++++||.+||++|.++..++|||+++. ..++|+.+||||++.+..||.|
T Consensus 797 l~~vfg~~~~adi~~~~~~lp~~~n~~s~r~~~fI~~lR~d~~~~p~~~ivr~~~~s~~k~~f~~~lvEDrs~~~~SY~e 876 (887)
T KOG1985|consen 797 LFDVFGVSTLADIPIGKYTLPELDNEESDRVRRFIKKLRDDRTYFPNLYIVRGDDNSPLKAWFFSRLVEDRSENSPSYYE 876 (887)
T ss_pred cccccCcchHhhcccccccCcccccchhHHHHHHHHHhhcCCcccceEEEEecCCCchHHHHHHHHHHhhhhcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999996654 4789999999999999999999
Q ss_pred HHHHHHHhC
Q psy12437 893 FLLRIREQV 901 (901)
Q Consensus 893 fl~~lh~~i 901 (901)
||.|||++|
T Consensus 877 fLq~lk~qv 885 (887)
T KOG1985|consen 877 FLQHLKAQV 885 (887)
T ss_pred HHHHHHHHh
Confidence 999999986
|
|
| >KOG1984|consensus | Back alignment and domain information |
|---|
| >PTZ00395 Sec24-related protein; Provisional | Back alignment and domain information |
|---|
| >PLN00162 transport protein sec23; Provisional | Back alignment and domain information |
|---|
| >COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >KOG1986|consensus | Back alignment and domain information |
|---|
| >COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >cd01468 trunk_domain trunk domain | Back alignment and domain information |
|---|
| >PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles | Back alignment and domain information |
|---|
| >PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] | Back alignment and domain information |
|---|
| >PRK13685 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme | Back alignment and domain information |
|---|
| >cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto) | Back alignment and domain information |
|---|
| >cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta | Back alignment and domain information |
|---|
| >cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >TIGR00868 hCaCC calcium-activated chloride channel protein 1 | Back alignment and domain information |
|---|
| >TIGR03788 marine_srt_targ marine proteobacterial sortase target protein | Back alignment and domain information |
|---|
| >cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins | Back alignment and domain information |
|---|
| >cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax | Back alignment and domain information |
|---|
| >cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins | Back alignment and domain information |
|---|
| >PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A | Back alignment and domain information |
|---|
| >cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation | Back alignment and domain information |
|---|
| >TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain | Back alignment and domain information |
|---|
| >cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin) | Back alignment and domain information |
|---|
| >PF13768 VWA_3: von Willebrand factor type A domain | Back alignment and domain information |
|---|
| >cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity | Back alignment and domain information |
|---|
| >cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration | Back alignment and domain information |
|---|
| >cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell | Back alignment and domain information |
|---|
| >PTZ00441 sporozoite surface protein 2 (SSP2); Provisional | Back alignment and domain information |
|---|
| >cd01477 vWA_F09G8-8_type VWA F09G8 | Back alignment and domain information |
|---|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
| >cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] | Back alignment and domain information |
|---|
| >cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology | Back alignment and domain information |
|---|
| >cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions | Back alignment and domain information |
|---|
| >cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >smart00327 VWA von Willebrand factor (vWF) type A domain | Back alignment and domain information |
|---|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
| >PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma | Back alignment and domain information |
|---|
| >cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions | Back alignment and domain information |
|---|
| >COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex | Back alignment and domain information |
|---|
| >cd01458 vWA_ku Ku70/Ku80 N-terminal domain | Back alignment and domain information |
|---|
| >smart00262 GEL Gelsolin homology domain | Back alignment and domain information |
|---|
| >cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases | Back alignment and domain information |
|---|
| >KOG2884|consensus | Back alignment and domain information |
|---|
| >COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only] | Back alignment and domain information |
|---|
| >cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0443|consensus | Back alignment and domain information |
|---|
| >TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70) | Back alignment and domain information |
|---|
| >cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family | Back alignment and domain information |
|---|
| >cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair | Back alignment and domain information |
|---|
| >TIGR00627 tfb4 transcription factor tfb4 | Back alignment and domain information |
|---|
| >cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF) | Back alignment and domain information |
|---|
| >KOG4407|consensus | Back alignment and domain information |
|---|
| >PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway | Back alignment and domain information |
|---|
| >KOG4274|consensus | Back alignment and domain information |
|---|
| >KOG2807|consensus | Back alignment and domain information |
|---|
| >PRK10997 yieM hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG2353|consensus | Back alignment and domain information |
|---|
| >KOG3768|consensus | Back alignment and domain information |
|---|
| >PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length | Back alignment and domain information |
|---|
| >KOG0444|consensus | Back alignment and domain information |
|---|
| >PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes | Back alignment and domain information |
|---|
| >KOG1151|consensus | Back alignment and domain information |
|---|
| >KOG0443|consensus | Back alignment and domain information |
|---|
| >KOG2487|consensus | Back alignment and domain information |
|---|
| >PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 901 | ||||
| 3eh1_A | 751 | Crystal Structure Of The Human Copii-Coat Protein S | 0.0 | ||
| 2nup_B | 753 | Crystal Structure Of The Human Sec23a24A HETERODIME | 0.0 | ||
| 3egd_B | 748 | Crystal Structure Of The Mammalian Copii-Coat Prote | 0.0 | ||
| 1m2v_B | 926 | Crystal Structure Of The Yeast Sec2324 HETERODIMER | 8e-85 | ||
| 1pcx_A | 810 | Crystal Structure Of The Copii Coat Subunit, Sec24, | 2e-84 | ||
| 3eh2_A | 766 | Crystal Structure Of The Human Copii-Coat Protein S | 5e-69 | ||
| 3efo_B | 770 | Crystal Structure Of The Mammalian Copii-Coat Prote | 2e-68 | ||
| 1m2o_A | 768 | Crystal Structure Of The Sec23-Sar1 Complex Length | 1e-04 | ||
| 2qtv_A | 772 | Structure Of Sec23-Sar1 Complexed With The Active F | 1e-04 |
| >pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 | Back alignment and structure |
|
| >pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 | Back alignment and structure |
| >pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 | Back alignment and structure |
| >pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 | Back alignment and structure |
| >pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 | Back alignment and structure |
| >pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766 | Back alignment and structure |
| >pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770 | Back alignment and structure |
| >pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 | Back alignment and structure |
| >pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
Score = 517 bits (1333), Expect = e-170
Identities = 230/919 (25%), Positives = 402/919 (43%), Gaps = 109/919 (11%)
Query: 88 PQQFQRPQQQNANHSQQTFRMPPNTYSQSSKTAPFNNGLTPLTNASLYQQQQQQQQQQQQ 147
PQ Q QNA QQ + P ++ + G+ P QQQ Q+Q
Sbjct: 10 PQA-QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ 68
Query: 148 QQQPIPNIPPLPNSQQ--------NSSNFQPSNNLYNNIQVPPRAQPGNYPSVPAGYPSL 199
Q I N ++ QP + + + QP P+ ++
Sbjct: 69 LHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128
Query: 200 NQAGYQQQQQQQQQQQQQQQTLNSQFSNLSVNQGMNKMWGYEPHDLLNTRD--------I 251
Q Q + + + + P +L N
Sbjct: 129 GQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNA 188
Query: 252 LPATKVEPPPIRLP-----QNLPEIHE---------------------------QFLYDR 279
+P +LP + +++ F+
Sbjct: 189 VPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQG 248
Query: 280 N---------------------TEMFGDPYRRPEIQSATVEYLATADYTVRDPPQPAMYL 318
Y R EI+ A +EY+A +YT+R P PA Y
Sbjct: 249 RRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLR-QPPPATYC 307
Query: 319 FLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEGQT--- 374
FL+DVSQ + +SG L T LL L S+P D RT I+I+ D+A+H++ +
Sbjct: 308 FLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNE 367
Query: 375 ----QPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPA 430
Q + M + D+++ FLP P +++V+L C I LL ++P F+ +L + ALGPA
Sbjct: 368 ESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPA 427
Query: 431 LQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQRSN--DDPPHMNPATDFYKKIA 488
L++A+ L+ GG+I + LPN G G LQ R + + ++ FYK
Sbjct: 428 LKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFT 487
Query: 489 LECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQLDRMFSRY 548
++C+ I VDLF+ + Y+D+A+LS +S+F++G H P +SGKN + + + F+++
Sbjct: 488 IDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFAKH 547
Query: 549 LTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHI 608
++ E+VMR R + G+ + F+G+FF RS+DL A + D Y ++++DE++
Sbjct: 548 ISMDFCMETVMRARGSTGLRMSRFYGHFFNRSSDLCAFSTMPRDQSYLFEVNVDESIMA- 606
Query: 609 QYACFQVAVLYTSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQH 668
Y QVAVL + + RRIR+ TL +P ++ +V ADQ IA AV+++L
Sbjct: 607 DYCYVQVAVLLSLNNSQRRIRIITLAMPTTESLAEVYASADQLAIASFYNSKAVEKALNS 666
Query: 669 SLSDAREAFLNVVCDVLSTYKMTQAGHLTG---SLLAPSSLKVLPLYVLALLKHPAFRIG 725
SL DAR V D+L+TYK T L ++L++ PL + +L KH AFR G
Sbjct: 667 SLDDARVLINKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMFPLLMHSLTKHMAFRSG 726
Query: 726 QSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNEL------QVPIPR 779
D R A+ ++ LPL L+ +IYP++Y +H + + + + +P+
Sbjct: 727 -IVPSDHRASALNNLESLPLKYLIKNIYPDVYSLHDMADEAGLPVQTEDGEATGTIVLPQ 785
Query: 780 ILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLE- 838
+ ++ + G YL++ + + + + PA+ +FG Q + +P E+P +E
Sbjct: 786 PINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVFDVFGTQDIFDIPIGKQEIPVVEN 845
Query: 839 TQLSLKLNSFISYLNDDKAYVS--PVKVIK--------------DSSPDRMEFYDKLIED 882
++ + ++ + I+ L + ++ + +++ + + R+ L+ED
Sbjct: 846 SEFNQRVRNIINQLRNHDDVITYQSLYIVRGASLSEPVNHASAREVATLRLWASSTLVED 905
Query: 883 KNAGGMAYYEFLLRIREQV 901
K +Y EFL ++ ++
Sbjct: 906 KILNNESYREFLQIMKARI 924
|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 | Back alignment and structure |
|---|
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 | Back alignment and structure |
|---|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 901 | |||
| 3eh1_A | 751 | Protein transport protein SEC24B; copii coat prote | 100.0 | |
| 3efo_B | 770 | SEC24 related gene family, member D; copii, coat p | 100.0 | |
| 3eh2_A | 766 | Protein transport protein SEC24C; copii-coat prote | 100.0 | |
| 1m2v_B | 926 | SEC24, protein transport protein SEC24, SEC24P, SE | 100.0 | |
| 1pcx_A | 810 | Protein transport protein SEC24; 2.50A {Saccharomy | 100.0 | |
| 1m2o_A | 768 | SEC23, protein transport protein SEC23, SEC23P; zi | 100.0 | |
| 2nut_A | 769 | Protein transport protein SEC23A; human copii SEC2 | 100.0 | |
| 4fx5_A | 464 | VON willebrand factor type A; structural genomics, | 99.27 | |
| 3ibs_A | 218 | Conserved hypothetical protein BATB; structural ge | 98.8 | |
| 1ijb_A | 202 | VON willebrand factor; dinucleotide-binding fold, | 98.42 | |
| 1q0p_A | 223 | Complement factor B; VON willebrand factor, MAC-1, | 98.39 | |
| 1atz_A | 189 | VON willebrand factor; collagen-binding, hemostasi | 98.32 | |
| 1shu_X | 182 | Anthrax toxin receptor 2; alpha/beta rossmann fold | 98.32 | |
| 4b4t_W | 268 | RPN10, 26S proteasome regulatory subunit RPN10; hy | 98.31 | |
| 1n3y_A | 198 | Integrin alpha-X; alpha/beta rossmann fold, cell a | 98.29 | |
| 1v7p_C | 200 | Integrin alpha-2; snake venom, C-type lectin, anta | 98.28 | |
| 1mf7_A | 194 | Integrin alpha M; cell adhesion; 1.25A {Homo sapie | 98.27 | |
| 3n2n_F | 185 | Anthrax toxin receptor 1; rossmann fold; 1.80A {Ho | 98.25 | |
| 4hqo_A | 266 | Sporozoite surface protein 2; malaria, gliding mot | 98.24 | |
| 4hqf_A | 281 | Thrombospondin-related anonymous protein, trap; ma | 98.24 | |
| 2b2x_A | 223 | Integrin alpha-1; computational design, antibody-a | 98.23 | |
| 1pt6_A | 213 | Integrin alpha-1; cell adhesion; 1.87A {Homo sapie | 98.17 | |
| 2odp_A | 509 | Complement C2; C3/C5 convertase, complement serin | 98.14 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.13 | |
| 1rrk_A | 497 | Complement factor B; BB, hydrolase; 2.00A {Homo sa | 98.11 | |
| 2x31_A | 189 | Magnesium-chelatase 60 kDa subunit; ligase, bacter | 98.11 | |
| 2x5n_A | 192 | SPRPN10, 26S proteasome regulatory subunit RPN10; | 98.11 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.04 | |
| 1mjn_A | 179 | Integrin alpha-L; rossmann fold, immune system; 1. | 98.03 | |
| 3hrz_D | 741 | Complement factor B; serine protease, glycosilated | 97.81 | |
| 3zqk_A | 199 | VON willebrand factor; blood clotting, adamts-13, | 97.75 | |
| 1jey_B | 565 | KU80; double-strand DNA break repair, non-homologo | 97.73 | |
| 2xgg_A | 178 | Microneme protein 2; A/I domain, cell adhesion, hy | 97.66 | |
| 1kcq_A | 104 | Gelsolin, brevin, ADF, AGEL; alpha-beta structure, | 97.51 | |
| 3k6s_A | 1095 | Integrin alpha-X; cell receptor, adhesion molecule | 97.47 | |
| 3fg7_A | 398 | Villin-1; actin binding protein, gelsolin, actin c | 97.25 | |
| 1svq_A | 114 | Severin; actin-binding; NMR {Dictyostelium discoid | 97.18 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 96.76 | |
| 1jey_A | 609 | KU70; double-strand DNA break repair, non-homologo | 96.68 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 96.42 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 95.78 | |
| 2ww8_A | 893 | RRGA, cell WALL surface anchor family protein; IGG | 95.69 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 95.56 | |
| 3t3p_B | 472 | Integrin beta-3; integrin, cell adhesion, blood cl | 95.45 | |
| 3rag_A | 242 | Uncharacterized protein; structural genomics, PSI- | 95.15 | |
| 3fcs_B | 690 | Integrin beta-3; beta propeller, rossmann fold, EG | 95.04 | |
| 1yvr_A | 538 | RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, | 94.81 | |
| 3vi3_B | 454 | Integrin beta-1; beta propeller fold, rossman fold | 94.65 | |
| 1j72_A | 347 | Macrophage capping protein; actin, human, CAP G, G | 93.98 | |
| 3v4v_B | 503 | Integrin beta-7; cell adhesion, madcam-1, membrane | 93.97 | |
| 1d0n_A | 729 | Horse plasma gelsolin; mixed alpha-beta structure, | 92.57 | |
| 3k6s_B | 687 | Integrin beta-2; cell receptor, adhesion molecule, | 92.53 | |
| 3fg6_A | 371 | Adseverin, scinderin; C-terminus of adseverin, act | 92.05 | |
| 2fh1_A | 344 | Gelsolin; calcium, contractIle protein; 1.55A {Hom | 91.17 | |
| 2nvo_A | 535 | RO sixty-related protein, RSR; alpha helical repea | 89.02 |
| >3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-141 Score=1276.41 Aligned_cols=655 Identities=50% Similarity=0.858 Sum_probs=614.7
Q ss_pred CCCCCCCCCCcccCCCCCCCCC--------------CcCccCcccccCCCCCCC---------CCCCCccccccccEEEE
Q psy12437 245 LLNTRDILPATKVEPPPIRLPQ--------------NLPEIHEQFLYDRNTEMF---------GDPYRRPEIQSATVEYL 301 (901)
Q Consensus 245 pl~e~~~lp~~~~~Pp~~~~~~--------------~~~~~p~~~~~~~~~~~~---------~d~~~rpEL~~~tvEy~ 301 (901)
|+++.+.+|.+.+.+| ++|+. +.|.||+|+..|.++..| +|.+.||||++|||||+
T Consensus 70 Pl~~~~~~P~v~~~~p-~RC~rCrayiNPf~~f~~~~~w~Cn~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~ 148 (751)
T 3eh1_A 70 PFRDLTQLPVITSNTI-VRCRSCRTYINPFVSFIDQRRWKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFI 148 (751)
T ss_dssp TTCCCSCCCEECCSCC-CBCTTTCCBCCTTCEESSSSEEECTTTCCEEECCGGGC---------CGGGSHHHHCSEEEEE
T ss_pred cCCcCCCCCccCCCCC-CcccCccCEeCCceEEecCCEEEcccccCCCCCCHHHhcccccccccCcccCchhccceEEEE
Confidence 7777667777766654 66652 789999999877665544 57899999999999999
Q ss_pred ecccccCCCCCCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCCCCCceEEEEEEccEEEEEEcCCCCCCCceeec
Q psy12437 302 ATADYTVRDPPQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPGDRRTSIAIITYDSAVHFYSLAEGQTQPSQMIL 381 (901)
Q Consensus 302 ~p~~y~~r~~~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~~~~~~VglItfd~~V~~y~l~~~~~~~~~~v~ 381 (901)
+|++|+.| +|.||+|+||||||..++++|+++++|++|+++|+.||+++|++|||||||++||||+|+.++++++|+|+
T Consensus 149 ~p~~y~~r-~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv 227 (751)
T 3eh1_A 149 ASSDYMLR-PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIV 227 (751)
T ss_dssp ECGGGCSS-SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEE
T ss_pred cChhhhcC-CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeecc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred cCccccCCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCccc
Q psy12437 382 TDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQ 461 (901)
Q Consensus 382 ~dl~d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~ 461 (901)
+|++|+|+|.|++||++++||++.|+++|++|+.+|..++++.+|+|+||++|..+|+..||||++|++|+||.|||+|+
T Consensus 228 ~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~GGrI~~F~sg~pt~GpG~l~ 307 (751)
T 3eh1_A 228 SDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPTGGRVSVFQTQLPSLGAGLLQ 307 (751)
T ss_dssp SCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTTCEEEEEEECSCCCSSTTCCC
T ss_pred ccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcCCCEEEEEecCCCCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC-CCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCC-CcchhHH
Q psy12437 462 SRENPNQRSN-DDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSG-KNMSHVY 539 (901)
Q Consensus 462 ~~~~~~~~~~-~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~-~~~~~~~ 539 (901)
.|++++.++| ||+++++++++||++||++|+++||+||+|+++.+++|++||+.+++.|||.+++|++|+. .+..+.+
T Consensus 308 ~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~ 387 (751)
T 3eh1_A 308 SREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAE 387 (751)
T ss_dssp CCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHH
T ss_pred cccccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHH
Confidence 9988875554 6678999999999999999999999999999999999999999999999999999999994 3445678
Q ss_pred HHHHHHHHhhhcccccceeEEEEecCCceEEEEecceeccCCCceeecCCCCCceEEEEEEEecccCCCceeEEEEEEEe
Q psy12437 540 QLDRMFSRYLTRKIGFESVMRIRCTKGMSIHTFHGNFFVRSTDLLALPNVNPDAGYGIQISIDENLTHIQYACFQVAVLY 619 (901)
Q Consensus 540 ~~~~dl~~~l~~~~g~~a~l~vr~S~gl~i~~~~G~~~~~~t~~~~l~~i~~~~s~~~~~~~~~~l~~~~~~~iQ~allY 619 (901)
+|.+||.+.+++++||+|+||||||+||+|+++||||+.++++.|+++++++|++|+|+|++++++.+...+|||+|++|
T Consensus 388 ~f~~dl~r~l~~~~gf~a~mrVR~S~glkv~~~~G~~~~~~t~~~~l~~i~~d~s~~v~~~~~~~l~~~~~~~~Q~allY 467 (751)
T 3eh1_A 388 KLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFHGNFFVRSTDLLSLANINPDAGFAVQLSIEESLTDTSLVCFQTALLY 467 (751)
T ss_dssp HHHHHHHHHHHSCCEEEEEEEEEECTTEEEEEEESSSEECSSSEEEEEEECTTCCEEEEEEESSCCCSCSEEEEEEEEEE
T ss_pred HHHHHHHHHHhhhhccceEEEEEecCCeEEEEeeCCeEeCCCCceEeccCCCCCEEEEEEEEcCCCCCCCceEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999877788999999999
Q ss_pred eecCCCeEEEEEecccccccCHHHHHhccCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy12437 620 TSSKGDRRIRVHTLCLPVVSNINDVLVGADQACIAGLLAKMAVDRSLQHSLSDAREAFLNVVCDVLSTYKMTQAGHLTGS 699 (901)
Q Consensus 620 t~~~G~rriRV~T~~l~vt~~~~~v~~~~D~~a~~~~lar~~~~~~~~~~~~d~r~~l~~~li~~l~~yr~~~~~~~~~~ 699 (901)
|+.+|+|||||||+++++++++.++|+++|+||++++|||+|+++++++++.|+|+||+++|+++|++||+++..+.+++
T Consensus 468 T~~~G~RRiRV~T~~l~vt~~~~~v~~~~DqeA~~~llar~av~~~~~~~l~d~r~~l~~~li~il~~Yr~~~~~~~~~~ 547 (751)
T 3eh1_A 468 TSSKGERRIRVHTLCLPVVSSLADVYAGVDVQAAICLLANMAVDRSVSSSLSDARDALVNAVVDSLSAYGSTVSNLQHSA 547 (751)
T ss_dssp ECTTSCEEEEEEEEEEEEECSHHHHHHTBCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC-----C
T ss_pred ecCCCCEEEEEEEecccccCCHHHHHHhcCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875444447
Q ss_pred cccCcccCcHHHHHHHHhcCccccCCCCCChhHHHHHHHHHcCCChHhhHhhhcceeeecccCCCCCCcccCCCccccCc
Q psy12437 700 LLAPSSLKVLPLYVLALLKHPAFRIGQSTRLDDRLFAMTEMKCLPLNSLMLSIYPELYPIHTLDQDPTIEWNELQVPIPR 779 (901)
Q Consensus 700 l~lp~~l~~lP~~~~~L~ks~~l~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~~~~~~~~~~~~~~~~~~~P~ 779 (901)
|+||++||+||+||++|+||++|+.+.++++|||+|+|+.++++++.+++.||||+||+||++.++++..++++.+++|+
T Consensus 548 l~lpe~lkllP~~~~~L~Ks~~~~~~~~~s~Der~~~~~~l~~~~~~~~~~~iyP~L~~~h~l~~~~~~~~~~~~~~~P~ 627 (751)
T 3eh1_A 548 LMAPSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYAMCQIKSQPLVHLMKMIHPNLYRIDRLTDEGAVHVNDRIVPQPP 627 (751)
T ss_dssp CEEEGGGTTHHHHHHHHHTSTTTCCSSCCCHHHHHHHHHHHHHSCHHHHHHHHSCEEEECTTCCSTTCEEETTEEECCCC
T ss_pred ccCcHHHHHHHHHHHHHHccHhhcCCCCCChhHHHHHHHHHhCCCHHHHHhhccceEEEeecCccccCcccCCCccCCCC
Confidence 99999999999999999999999987789999999999999999999999999999999999988776656666678999
Q ss_pred cccccccccccCeEEEEeCCceEEEEecCCCChHHHhcccCCCCcCCCCcccccCCCCchHHHHHHHHHHHHHhhcCCCc
Q psy12437 780 ILQLSAERLQATGTYLLNMPDLIIILVRHGTSPAICSGLFGFQSVAQMPETLFELPQLETQLSLKLNSFISYLNDDKAYV 859 (901)
Q Consensus 780 ~l~Ls~~~l~~~~iyLld~g~~i~i~vG~~v~~~~~~~lfg~~~~~~~~~~~~~lp~~d~~~s~~~~~~i~~l~~~r~~~ 859 (901)
.++||.++|++|||||||+|+.||||+|++++++++++|||++++.+++..+.+||++||+.|+++|++|+++|+.|.++
T Consensus 628 ~l~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~dlFGv~~~~~~~~~~~~lp~~~t~~s~~vr~ii~~lr~~r~~~ 707 (751)
T 3eh1_A 628 LQKLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIEDVLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLS 707 (751)
T ss_dssp CBCSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHTTCCSSGGGCCSSBCCCCCCSSHHHHHHHHHHHHHHHTSSSC
T ss_pred cccCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHHHcCCCchhhcCcccccCCCCCCHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccEEEEeCCCccHHHHHHHhcccCCCCCCCHHHHHHHHHHhC
Q psy12437 860 SPVKVIKDSSPDRMEFYDKLIEDKNAGGMAYYEFLLRIREQV 901 (901)
Q Consensus 860 ~p~~iv~~~~~~~~~f~~~LvED~~~~~~Sy~~fl~~lh~~i 901 (901)
+.++||+++++.|.+|.++||||++++.+||+|||++|||+|
T Consensus 708 ~~l~vvr~~~~~~~~f~~~LvED~~~~~~SY~~fL~~~h~~i 749 (751)
T 3eh1_A 708 PILHIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQI 749 (751)
T ss_dssp CEEEEEESSSSSHHHHHTTCTTSCBTTBCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCCchHHHHHHhCcccCCCCCCCHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999999986
|
| >3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B | Back alignment and structure |
|---|
| >3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 | Back alignment and structure |
|---|
| >1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A | Back alignment and structure |
|---|
| >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* | Back alignment and structure |
|---|
| >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A | Back alignment and structure |
|---|
| >4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila} | Back alignment and structure |
|---|
| >3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C | Back alignment and structure |
|---|
| >1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A | Back alignment and structure |
|---|
| >1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y* | Back alignment and structure |
|---|
| >4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A | Back alignment and structure |
|---|
| >1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G | Back alignment and structure |
|---|
| >3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A* | Back alignment and structure |
|---|
| >4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A | Back alignment and structure |
|---|
| >2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1 | Back alignment and structure |
|---|
| >1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A | Back alignment and structure |
|---|
| >2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* | Back alignment and structure |
|---|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A | Back alignment and structure |
|---|
| >2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ... | Back alignment and structure |
|---|
| >3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* | Back alignment and structure |
|---|
| >3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A* | Back alignment and structure |
|---|
| >1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B* | Back alignment and structure |
|---|
| >2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii} | Back alignment and structure |
|---|
| >1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 | Back alignment and structure |
|---|
| >3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A* | Back alignment and structure |
|---|
| >3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A | Back alignment and structure |
|---|
| >1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B* | Back alignment and structure |
|---|
| >3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* | Back alignment and structure |
|---|
| >1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A | Back alignment and structure |
|---|
| >3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B* | Back alignment and structure |
|---|
| >1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A | Back alignment and structure |
|---|
| >3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B* | Back alignment and structure |
|---|
| >1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* | Back alignment and structure |
|---|
| >3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* | Back alignment and structure |
|---|
| >3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A | Back alignment and structure |
|---|
| >2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 901 | ||||
| d1pd0a3 | 252 | c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar | 2e-75 | |
| d2qtva3 | 271 | c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar | 3e-54 | |
| d1pd0a2 | 177 | b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast | 2e-35 | |
| d1pd0a1 | 107 | a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar | 1e-28 | |
| d1pd0a4 | 173 | d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccha | 4e-24 | |
| d1pd0a5 | 85 | g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha | 2e-05 | |
| d1od5a1 | 245 | b.82.1.2 (A:7-251) Seed storage 7S protein {Soybea | 8e-04 |
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 245 bits (626), Expect = 2e-75
Identities = 88/250 (35%), Positives = 143/250 (57%), Gaps = 10/250 (4%)
Query: 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSL- 369
P PA Y FL+DVSQ + +SG L T LL L S+P D RT I+I+ D+A+H++ +
Sbjct: 1 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIP 60
Query: 370 ------AEGQTQPSQMILTDIDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDS 423
E Q + M + D+++ FLP P +++V+L C I LL ++P F+ +L +
Sbjct: 61 LDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLIT 120
Query: 424 GSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSRENPNQ--RSNDDPPHMNPAT 481
ALGPAL++A+ L+ GG+I + LPN G G LQ R S + ++
Sbjct: 121 NFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQD 180
Query: 482 DFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQL 541
FYK ++C+ I VDLF+ + Y+D+A+LS +S+F++G H P +SGKN + + +
Sbjct: 181 SFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF 240
Query: 542 DRMFSRYLTR 551
F+++++
Sbjct: 241 STEFAKHISM 250
|
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177 | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 173 | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 | Back information, alignment and structure |
|---|
| >d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Length = 245 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 901 | |||
| d1pd0a3 | 252 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d2qtva3 | 271 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1pd0a4 | 173 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.96 | |
| d2qtva1 | 103 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.9 | |
| d1pd0a2 | 177 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.9 | |
| d1pd0a1 | 107 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.86 | |
| d2qtva4 | 142 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.71 | |
| d2qtva2 | 176 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.64 | |
| d2qtva5 | 75 | Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.63 | |
| d1pd0a5 | 85 | Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.59 | |
| d1atza_ | 184 | von Willebrand factor A3 domain, vWA3 {Human (Homo | 98.08 | |
| d1n3ya_ | 189 | Integrin alpha-x beta2 {Human (Homo sapiens) [TaxI | 98.05 | |
| d1shux_ | 181 | Capillary morphogenesis protein 2 domain {Human (H | 98.03 | |
| d1q0pa_ | 209 | Complement factor B domain {Human (Homo sapiens) [ | 97.98 | |
| d2fh1a3 | 113 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1ijba_ | 202 | von Willebrand factor A1 domain, vWA1 {Human (Homo | 97.84 | |
| d1svya_ | 102 | Severin, domain 2 {Dictyostelium discoideum [TaxId | 97.84 | |
| d1v7pc_ | 193 | Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId | 97.71 | |
| d1pt6a_ | 192 | Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId | 97.6 | |
| d1j72a2 | 116 | Macrophage capping protein Cap G {Human (Homo sapi | 97.53 | |
| d1mf7a_ | 194 | Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha sub | 97.53 | |
| d1jeyb2 | 236 | Ku80 subunit N-terminal domain {Human (Homo sapien | 97.52 | |
| d1kcqa_ | 104 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.47 | |
| d2fh1a2 | 96 | Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | 97.32 | |
| d1jeya2 | 220 | Ku70 subunit N-terminal domain {Human (Homo sapien | 97.26 | |
| d1mjna_ | 179 | Integrin CD11a/CD18 (Leukocyte function associated | 97.02 | |
| d1tyeb2 | 248 | Integrin beta A domain {Human (Homo sapiens) [TaxI | 96.88 | |
| d1j72a3 | 107 | Macrophage capping protein Cap G {Human (Homo sapi | 96.81 | |
| d1d0na3 | 121 | Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | 96.44 | |
| d1yvra2 | 174 | 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African c | 94.19 |
| >d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: vWA-like superfamily: vWA-like family: Trunk domain of Sec23/24 domain: Sec24 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-50 Score=428.90 Aligned_cols=242 Identities=36% Similarity=0.671 Sum_probs=205.7
Q ss_pred CCCcEEEEEEEcchhHHhhchHHHHHHHHHHHHhcCCC-CCCceEEEEEEccEEEEEEcCCC-------CCCCceeeccC
Q psy12437 312 PQPAMYLFLLDVSQIAAQSGYLYTVCEVLLNQLKSMPG-DRRTSIAIITYDSAVHFYSLAEG-------QTQPSQMILTD 383 (901)
Q Consensus 312 ~~pp~~vFvID~s~~a~~~g~l~~~~~si~~~L~~lp~-~~~~~VglItfd~~V~~y~l~~~-------~~~~~~~v~~d 383 (901)
|+||+||||||+|+.++++|+++++|++|+.+|+.||+ +++++|||||||+.||||+++.. ...+++++++|
T Consensus 1 P~Pp~~vFvID~s~~a~~~g~l~~~~~si~~~l~~l~~~~~~~~VgiItf~~~V~~y~l~~~~~~~~~~~~~~~~~~~~d 80 (252)
T d1pd0a3 1 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD 80 (252)
T ss_dssp CCCCBEEEEEECSHHHHHHTHHHHHHHHHHTTTTTSCCTTSCCEECEEEESSSEEEEECCCGGGC-------CEEECCCC
T ss_pred CCCCEEEEEEECCHHHhhhhHHHHHHHHHHHHHHhCcCCCCCcEEEEEEECCEEEEEEccCCccccccccccccccchhh
Confidence 68999999999999999999999999999999999996 46789999999999999999743 23578899999
Q ss_pred ccccCCCCCCCcccchhhhHHHHHHHHHhCCccccCCCCCCCcHHHHHHHHHHhhcCCCCEEEEEecCCCCCCCCcccCC
Q psy12437 384 IDDIFLPSPENILVNLSECYDMIVDLLKQLPGKFKDSLDSGSALGPALQAAFKLLQPTGGRITIFQTCLPNRGPGALQSR 463 (901)
Q Consensus 384 l~d~f~p~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~~~G~AL~~A~~ll~~~GGrI~~F~~g~pt~GpG~l~~~ 463 (901)
|+|+|+|.|++|++++.||++.|+++|++|+..+...+++++|+|+||.+|..+|+..||||++|++|+||.|||+|+.|
T Consensus 81 l~~~~~p~~~~~lv~~~e~~~~i~~~L~~l~~~~~~~~~~~~~~G~Al~~a~~~l~~~gGkI~~f~sg~pt~GpG~l~~r 160 (252)
T d1pd0a3 81 LEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTLPNLGIGKLQRR 160 (252)
T ss_dssp TTCC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTTCEEEEEEESSCCCSSTTCCCC-
T ss_pred hhhccCCCCccceeeHHHHHHHHHHHHHhChhhcccCCCCcccHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCcccccc
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999998
Q ss_pred CCCCCC-C-CCCCCCCCchHHHHHHHHHHHhhCCcEEEEEEecCCccCchhhhhccccCCceEEEeCCCCCCcchhHHHH
Q psy12437 464 ENPNQR-S-NDDPPHMNPATDFYKKIALECTSFYIAVDLFILNSQYVDLATLSGVSKFSSGCIHHIPLYSGKNMSHVYQL 541 (901)
Q Consensus 464 ~~~~~~-~-~~~~~~~~~a~~fY~~la~~~~~~~isvdlf~~s~~~~~l~~l~~l~~~TGG~v~~y~~f~~~~~~~~~~~ 541 (901)
++.... . .++.++++++++||++||.+|+++||+||+|+++.+++|+++|+.||+.|||.+++|++|+.....+..+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~~~TGG~~~~y~~f~~~~~~d~~k~ 240 (252)
T d1pd0a3 161 NESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKF 240 (252)
T ss_dssp -------------------CCHHHHHHHHHTTTTEEEEEEEEESBCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHH
T ss_pred cccccccCcccchhcccchHHHHHHHHHHHHHCCEEEEEEeccccccCcHHHhhHhhcCCceEEEeCCCCcccHHHHHHH
Confidence 754432 2 23468899999999999999999999999999999999999999999999999999999997656778899
Q ss_pred HHHHHHhhhccc
Q psy12437 542 DRMFSRYLTRKI 553 (901)
Q Consensus 542 ~~dl~~~l~~~~ 553 (901)
.+||.++|+|++
T Consensus 241 ~~dl~~~l~~~~ 252 (252)
T d1pd0a3 241 STEFAKHISMDF 252 (252)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHhccCCC
Confidence 999999998763
|
| >d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
| >d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
| >d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]} | Back information, alignment and structure |
|---|