Psyllid ID: psy12456

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160--
Protein Sequence
ISASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL
Secondary Structure (PSIPRED)
ccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEcccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEcc
Coil and Loop (DISEMBL)
isasgaggptlttaqlhpdglifgigtsdsQVQIWDLkkqknvtdfqldagpiqalsfsengyylataadenCVKLWDLrklknfktlqldpnyeirdlcfdqsgtymavaGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLasssmdrtlklysl
Flexible Loop (DISEMBL)
isasgaggptltTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKnfktlqldpnyeIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHylasssmdrtlklysl
Low Complexity Region (SEG)
ISASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL
Disordered region (IsUnstruct)
**************QLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLA*************
Disordered Region (DISOPRED)
ISASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL
Disordered Region (DISEMBL)
********PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL
Disordered Region (DISPRO)
*****AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ISASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	162	2.2.26 [Sep-21-2011]
Q9JMJ4	504	Pre-mRNA-processing facto	yes	N/A	0.956	0.307	0.645	2e-59
Q99KP6	504	Pre-mRNA-processing facto	no	N/A	0.956	0.307	0.645	2e-59
Q08E38	504	Pre-mRNA-processing facto	yes	N/A	0.956	0.307	0.645	2e-59
Q9UMS4	504	Pre-mRNA-processing facto	yes	N/A	0.956	0.307	0.645	2e-59
Q5ZMA2	505	Pre-mRNA-processing facto	yes	N/A	0.969	0.310	0.636	3e-59
Q10051	492	Pre-mRNA-processing facto	yes	N/A	0.888	0.292	0.452	7e-37
Q9AV81	527	U-box domain-containing p	yes	N/A	0.913	0.280	0.480	5e-35
O22785	525	Pre-mRNA-processing facto	yes	N/A	0.901	0.278	0.468	1e-32
Q94BR4	523	Pre-mRNA-processing facto	no	N/A	0.907	0.281	0.452	7e-32
Q7KWK5	514	Pre-mRNA-processing facto	yes	N/A	0.740	0.233	0.421	3e-19

>sp|Q9JMJ4|PRP19_RAT Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2

 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query: 8   GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           G +LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYLAT
Sbjct: 350 GCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLAT 409

Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
           AAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E+ 
Sbjct: 410 AADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEIL 469

Query: 128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
            F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct: 470 HFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity. Essential for spliceosome assembly in a oligomerization-dependent manner and might also be important for spliceosome stability. May have E3 ubiquitin ligase activity. The PSO4 complex is required in the DNA interstrand cross-links (ICLs) repair process.
Rattus norvegicus (taxid: 10116)

>sp|Q99KP6|PRP19_MOUSE Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1

 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query: 8   GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           G +LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYLAT
Sbjct: 350 GCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLAT 409

Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
           AAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E+ 
Sbjct: 410 AADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEIL 469

Query: 128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
            F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct: 470 HFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity. Essential for spliceosome assembly in a oligomerization-dependent manner and might also be important for spliceosome stability. May have E3 ubiquitin ligase activity. The PSO4 complex is required in the DNA interstrand cross-links (ICLs) repair process.

Mus musculus (taxid: 10090)

>sp|Q08E38|PRP19_BOVIN Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1

 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query: 8   GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           G +LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYLAT
Sbjct: 350 GCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLAT 409

Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
           AAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E+ 
Sbjct: 410 AADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEIL 469

Query: 128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
            F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct: 470 HFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity. Essential for spliceosome assembly in a oligomerization-dependent manner and might also be important for spliceosome stability. May have E3 ubiquitin ligase activity. The PSO4 complex is required in the DNA interstrand cross-links (ICLs) repair process.

Bos taurus (taxid: 9913)

>sp|Q9UMS4|PRP19_HUMAN Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1

 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query: 8   GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           G +LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYLAT
Sbjct: 350 GCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLAT 409

Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
           AAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E+ 
Sbjct: 410 AADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEIL 469

Query: 128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
            F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct: 470 HFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504

Plays a role in DNA double-strand break (DSB) repair and pre-mRNA splicing reaction. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity. Essential for spliceosome assembly in a oligomerization-dependent manner and might also be important for spliceosome stability. May have E3 ubiquitin ligase activity. The PSO4 complex is required in the DNA interstrand cross-links (ICLs) repair process. Overexpression of PRPF19 might extend the cellular life span by increasing the resistance to stress or by improving the DNA repair capacity of the cells.

Homo sapiens (taxid: 9606)

>sp|Q5ZMA2|PRP19_CHICK Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1

 Score =  227 bits (578), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 100/157 (63%), Positives = 128/157 (81%)

Query: 6   AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYL 65
           + G  LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYL
Sbjct: 349 SSGCALTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYL 408

Query: 66  ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQE 125
           ATAAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E
Sbjct: 409 ATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTE 468

Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           +  F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct: 469 ILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 505

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity.

Gallus gallus (taxid: 9031)

>sp|Q10051|PRP19_CAEEL Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=3 SV=2

 Score =  152 bits (385), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 67/148 (45%), Positives = 97/148 (65%)

Query: 15  QLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCV 74
           + HPDGLIFG G +D+ V+IWDLK Q     F      +++++FSENGYYLAT +++  V
Sbjct: 345 EFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEV 404

Query: 75  KLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTA 134
           KLWDLRKLKN KT   +    I  L FD +GT++ + G  V+V   K W E+   ++H+ 
Sbjct: 405 KLWDLRKLKNLKTFANEEKQPINSLSFDMTGTFLGIGGQKVQVLHVKSWSEVVSLSDHSG 464

Query: 135 MVTGVRFGTHAHYLASSSMDRTLKLYSL 162
            VTGVRFG +A  L + S+D++L+++S 
Sbjct: 465 PVTGVRFGENARSLVTCSLDKSLRVFSF 492

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9AV81|PUB72_ORYSJ U-box domain-containing protein 72 OS=Oryza sativa subsp. japonica GN=PUB72 PE=2 SV=1

 Score =  146 bits (369), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 75/156 (48%), Positives = 103/156 (66%), Gaps = 8/156 (5%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE 71
           T+A  HPDGLI G GT+++ V+IWD+K Q NV  F+   GP+ A+SFSENGY+LATAA +
Sbjct: 356 TSASFHPDGLILGTGTTEAVVKIWDVKTQSNVAKFEGHVGPVTAMSFSENGYFLATAALD 415

Query: 72  NCVKLWDLRKLKNFKTLQ-LDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK----QWQEL 126
             VKLWDLRKL+NF+T+   D +     + FD SG+Y+AV G+D RV+       +W  +
Sbjct: 416 G-VKLWDLRKLRNFRTISPYDSDTPTNSVEFDFSGSYLAVGGSDTRVYQVANVKLEWNLV 474

Query: 127 AMFNE--HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
               +   T  VT V+FGT A Y+A  SMDR L+++
Sbjct: 475 KTLPDLSGTGKVTNVKFGTDAKYIAVGSMDRNLRIF 510

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O22785|PR19B_ARATH Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3

 Score =  139 bits (349), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 101/158 (63%), Gaps = 12/158 (7%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE 71
           T A  HPDGLI G GTS S V+IWD+K Q NV  F    G + A+SFSENGY+LATAA E
Sbjct: 357 TAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAA-E 415

Query: 72  NCVKLWDLRKLKNFKT-LQLDPNYEIRDLCFDQSGTYMAVAGTDVRVF----LCKQWQEL 126
           + V+LWDLRKL+NFK+ L  D N     + FD SG+Y+ +A +D++V+    +  +W  +
Sbjct: 416 DGVRLWDLRKLRNFKSFLSADAN----SVEFDPSGSYLGIAASDIKVYQTASVKAEWNLI 471

Query: 127 AMFNE--HTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
               +   T   T V+FG+ A Y+A  SMDR L+++ L
Sbjct: 472 KTLPDLSGTGKATCVKFGSDAQYVAVGSMDRNLRIFGL 509

Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immnunity. Functions as U-box E3 ubiquitin-protein ligase. May also serve as a support for spliceosome binding and activity.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94BR4|PR19A_ARATH Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1

 Score =  136 bits (342), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 96/157 (61%), Gaps = 10/157 (6%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE 71
           T A  HPDGLI G GT+ S V+IWD+K Q NV  F    G I ++SFSENGY+LATAA +
Sbjct: 358 TAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALD 417

Query: 72  NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVF----LCKQWQELA 127
             V+LWDLRKLKNF+T        +    FD SG+Y+ +A +D+RVF    +  +W  + 
Sbjct: 418 G-VRLWDLRKLKNFRTFDFPDANSVE---FDHSGSYLGIAASDIRVFQAASVKAEWNPIK 473

Query: 128 MFNE--HTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
              +   T   T V+FG  + Y+A  SMDR L+++ L
Sbjct: 474 TLPDLSGTGKATSVKFGLDSKYIAVGSMDRNLRIFGL 510

Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Functions as U-box E3 ubiquitin-protein ligase (By similarity). May also serve as a support for spliceosome binding and activity.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7KWK5|PRP19_DICDI Pre-mRNA-processing factor 19 homolog OS=Dictyostelium discoideum GN=prp19 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 8/128 (6%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE 71
           T+   HPDG+ F  GT +  V+I+DLK + N  +FQ  +  +  +SFSENGYYL TAAD 
Sbjct: 356 TSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNFQGLSTAVNCISFSENGYYL-TAADN 414

Query: 72  NCVKLWDLRK--LKN---FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQE 125
           N VKL+DLRK   KN    +T+ LD N +I+ + FD S  Y+ VA ++ + ++ CK  Q+
Sbjct: 415 NTVKLFDLRKAATKNSPDIQTITLD-NQQIKSINFDYSSQYLGVASSNQINLYSCKSKQK 473

Query: 126 LAMFNEHT 133
             + + H+
Sbjct: 474 PPISSIHS 481

Plays a role in DNA double-strand break (DSB) repair. Binds double-stranded DNA in a sequence-nonspecific manner. Acts as a structural component of the nuclear framework. May also serve as a support for spliceosome binding and activity.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
332024009	503	Pre-mRNA-processing factor 19 [Acromyrme	0.981	0.316	0.742	8e-69
322787730	481	hypothetical protein SINV_06148 [Solenop	0.981	0.330	0.742	2e-68
307178212	504	Pre-mRNA-processing factor 19 [Camponotu	0.981	0.315	0.735	2e-68
383852262	504	PREDICTED: pre-mRNA-processing factor 19	0.938	0.301	0.769	2e-68
307205555	504	Pre-mRNA-processing factor 19 [Harpegnat	0.981	0.315	0.742	3e-68
17647459	505	Prp19 [Drosophila melanogaster] gi|56790	0.938	0.300	0.769	3e-68
194881103	505	GG20970 [Drosophila erecta] gi|195487445	0.938	0.300	0.769	3e-68
195335603	505	GM19905 [Drosophila sechellia] gi|194126	0.938	0.300	0.769	3e-68
125810009	505	GA18945 [Drosophila pseudoobscura pseudo	0.938	0.300	0.769	3e-68
195155346	505	GL16701 [Drosophila persimilis] gi|19411	0.938	0.300	0.769	4e-68

>gi|332024009|gb|EGI64227.1| Pre-mRNA-processing factor 19 [Acromyrmex echinatior]

 Score =  264 bits (675), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 138/159 (86%)

Query: 4   SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY 63
           +G  G  LTTAQ HPDGLIFG GT+DSQV+IWDLK+Q NV +F    GPI A+SFSENGY
Sbjct: 344 AGQAGQPLTTAQFHPDGLIFGTGTADSQVKIWDLKEQSNVANFPGHTGPITAISFSENGY 403

Query: 64  YLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW 123
           YLATAA+++CVKLWDLRKLKNFKTLQL+ +YE++D+CFDQSGTY+AVAGTDVRV+LCKQW
Sbjct: 404 YLATAAEDSCVKLWDLRKLKNFKTLQLEESYEVKDICFDQSGTYLAVAGTDVRVYLCKQW 463

Query: 124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           QEL + N+HTA  TGVRFG HA Y+AS+SMDRTLKLY L
Sbjct: 464 QELKVLNDHTAAATGVRFGKHAQYIASTSMDRTLKLYGL 502

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322787730|gb|EFZ13724.1| hypothetical protein SINV_06148 [Solenopsis invicta]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 139/159 (87%)

Query: 4   SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY 63
           +G  G  LTTAQ HPDGLIFG GT+DSQV+IWDLK+Q NV +F   +GPI A+SFSENGY
Sbjct: 322 AGQVGQPLTTAQFHPDGLIFGTGTADSQVKIWDLKEQSNVANFPGHSGPITAISFSENGY 381

Query: 64  YLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW 123
           YLATAA+++CVKLWDLRKLKNFKTLQL+ +YE++D+CFDQSGTY+AVAGTDVRV+LCKQW
Sbjct: 382 YLATAAEDSCVKLWDLRKLKNFKTLQLEESYEVKDICFDQSGTYLAVAGTDVRVYLCKQW 441

Query: 124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           QEL + N+HTA  TGVRFG HA Y+AS+SMDRTLKLY L
Sbjct: 442 QELKVLNDHTAAATGVRFGKHAQYIASTSMDRTLKLYGL 480

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178212|gb|EFN66997.1| Pre-mRNA-processing factor 19 [Camponotus floridanus]

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 117/159 (73%), Positives = 138/159 (86%)

Query: 4   SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY 63
           +G  G  LTTAQ HPDGLIFG GT+DSQV+IWDLK+Q NV +F    GPI A+SFSENGY
Sbjct: 345 AGQTGQPLTTAQFHPDGLIFGTGTADSQVKIWDLKEQSNVANFPGHTGPITAISFSENGY 404

Query: 64  YLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW 123
           YLATAA+++CVKLWDLRKLKNFKTLQL+ +YE++D+CFDQSGTY+AVAGTDVR++LCKQW
Sbjct: 405 YLATAAEDSCVKLWDLRKLKNFKTLQLEESYEVKDICFDQSGTYLAVAGTDVRIYLCKQW 464

Query: 124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           QEL + N+HTA  TGVRFG HA Y+AS+SMDRTLKLY L
Sbjct: 465 QELKVLNDHTAAATGVRFGKHAQYIASTSMDRTLKLYGL 503

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852262|ref|XP_003701647.1| PREDICTED: pre-mRNA-processing factor 19 [Megachile rotundata]

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 136/152 (89%)

Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
           LTTAQ HPDGLIFG GT+DSQV+IWDLK+Q NV +F   +GPI A+SFSENGYYLATAA+
Sbjct: 352 LTTAQFHPDGLIFGTGTADSQVKIWDLKEQSNVANFPGHSGPITAISFSENGYYLATAAE 411

Query: 71  ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN 130
           ++CVKLWDLRKLKNFKTLQL+ +YE+RD+CFDQSGTY+AVAGTDVRV+LCKQWQEL + N
Sbjct: 412 DSCVKLWDLRKLKNFKTLQLEESYEVRDICFDQSGTYLAVAGTDVRVYLCKQWQELKVLN 471

Query: 131 EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           +HTA  TGVRFG HA Y+AS+SMDRTLKLY L
Sbjct: 472 DHTAAATGVRFGKHAQYIASTSMDRTLKLYGL 503

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205555|gb|EFN83860.1| Pre-mRNA-processing factor 19 [Harpegnathos saltator]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 118/159 (74%), Positives = 138/159 (86%)

Query: 4   SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY 63
           +G  G  LTTAQ HPDGLIFG GT+DSQV+IWDLK+Q NV +F    GPI A+SFSENGY
Sbjct: 345 AGQVGQPLTTAQFHPDGLIFGTGTADSQVKIWDLKEQSNVANFPGHTGPITAISFSENGY 404

Query: 64  YLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW 123
           YLATAA+++CVKLWDLRKLKNFKTLQL+ +YE++D+CFDQSGTY+AVAGTDVRV+LCKQW
Sbjct: 405 YLATAAEDSCVKLWDLRKLKNFKTLQLEESYEVKDICFDQSGTYLAVAGTDVRVYLCKQW 464

Query: 124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           QEL + N+HTA  TGVRFG HA Y+AS+SMDRTLKLY L
Sbjct: 465 QELKVLNDHTAAATGVRFGKHAQYIASTSMDRTLKLYGL 503

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17647459|ref|NP_523783.1| Prp19 [Drosophila melanogaster] gi|5679074|gb|AAD46846.1|AF160906_1 BcDNA.LD02793 [Drosophila melanogaster] gi|7302603|gb|AAF57684.1| Prp19 [Drosophila melanogaster]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 135/152 (88%)

Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
           LTTAQ HPDGLIFG GT DSQV+IWDLK+Q NV +F    GPI A+SFSENGYYLATAAD
Sbjct: 353 LTTAQFHPDGLIFGTGTVDSQVKIWDLKEQSNVANFPGHTGPISAISFSENGYYLATAAD 412

Query: 71  ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN 130
           + CVKLWDLRKLKNFKT+QLD  YE++DLCFDQSGTY+A+AG+DVRV+LCKQWQEL +FN
Sbjct: 413 DACVKLWDLRKLKNFKTIQLDDGYEVKDLCFDQSGTYLAIAGSDVRVYLCKQWQELKVFN 472

Query: 131 EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           +HTA+ TGVRFG HA YLAS+SMDRTLKLY++
Sbjct: 473 DHTALATGVRFGKHAQYLASTSMDRTLKLYAI 504

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194881103|ref|XP_001974688.1| GG20970 [Drosophila erecta] gi|195487445|ref|XP_002091912.1| GE13910 [Drosophila yakuba] gi|190657875|gb|EDV55088.1| GG20970 [Drosophila erecta] gi|194178013|gb|EDW91624.1| GE13910 [Drosophila yakuba]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 135/152 (88%)

Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
           LTTAQ HPDGLIFG GT DSQV+IWDLK+Q NV +F    GPI A+SFSENGYYLATAAD
Sbjct: 353 LTTAQFHPDGLIFGTGTVDSQVKIWDLKEQSNVANFPGHTGPISAISFSENGYYLATAAD 412

Query: 71  ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN 130
           + CVKLWDLRKLKNFKT+QLD  YE++DLCFDQSGTY+A+AG+DVRV+LCKQWQEL +FN
Sbjct: 413 DACVKLWDLRKLKNFKTIQLDDGYEVKDLCFDQSGTYLAIAGSDVRVYLCKQWQELKVFN 472

Query: 131 EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           +HTA+ TGVRFG HA YLAS+SMDRTLKLY++
Sbjct: 473 DHTALATGVRFGKHAQYLASTSMDRTLKLYAI 504

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195335603|ref|XP_002034453.1| GM19905 [Drosophila sechellia] gi|194126423|gb|EDW48466.1| GM19905 [Drosophila sechellia]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 135/152 (88%)

Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
           LTTAQ HPDGLIFG GT DSQV+IWDLK+Q NV +F    GPI A+SFSENGYYLATAAD
Sbjct: 353 LTTAQFHPDGLIFGTGTVDSQVKIWDLKEQSNVANFPGHTGPISAISFSENGYYLATAAD 412

Query: 71  ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN 130
           + CVKLWDLRKLKNFKT+QLD  YE++DLCFDQSGTY+A+AG+DVRV+LCKQWQEL +FN
Sbjct: 413 DACVKLWDLRKLKNFKTIQLDDGYEVKDLCFDQSGTYLAIAGSDVRVYLCKQWQELKVFN 472

Query: 131 EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           +HTA+ TGVRFG HA YLAS+SMDRTLKLY++
Sbjct: 473 DHTALATGVRFGKHAQYLASTSMDRTLKLYAI 504

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125810009|ref|XP_001361321.1| GA18945 [Drosophila pseudoobscura pseudoobscura] gi|54636496|gb|EAL25899.1| GA18945 [Drosophila pseudoobscura pseudoobscura]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 135/152 (88%)

Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
           LTTAQ HPDGLIFG GT DSQV+IWDLK+Q NV +F    GPI A+SFSENGYYLATAAD
Sbjct: 353 LTTAQFHPDGLIFGTGTVDSQVKIWDLKEQSNVANFPGHTGPISAISFSENGYYLATAAD 412

Query: 71  ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN 130
           + CVKLWDLRKLKNFKT+QLD  YE++DLCFDQSGTY+A+AGTDVRV+LCKQWQ+L +FN
Sbjct: 413 DACVKLWDLRKLKNFKTIQLDDGYEVKDLCFDQSGTYLAIAGTDVRVYLCKQWQDLKIFN 472

Query: 131 EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           +HTA+ TGVRFG HA YLAS+SMDRTLKLY++
Sbjct: 473 DHTALATGVRFGKHAQYLASTSMDRTLKLYAI 504

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195155346|ref|XP_002018566.1| GL16701 [Drosophila persimilis] gi|194114362|gb|EDW36405.1| GL16701 [Drosophila persimilis]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 135/152 (88%)

Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
           LTTAQ HPDGLIFG GT DSQV+IWDLK+Q NV +F    GPI A+SFSENGYYLATAAD
Sbjct: 353 LTTAQFHPDGLIFGTGTVDSQVKIWDLKEQSNVANFPGHTGPISAISFSENGYYLATAAD 412

Query: 71  ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN 130
           + CVKLWDLRKLKNFKT+QLD  YE++DLCFDQSGTY+A+AGTDVRV+LCKQWQ+L +FN
Sbjct: 413 DACVKLWDLRKLKNFKTIQLDDGYEVKDLCFDQSGTYLAIAGTDVRVYLCKQWQDLKIFN 472

Query: 131 EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           +HTA+ TGVRFG HA YLAS+SMDRTLKLY++
Sbjct: 473 DHTALATGVRFGKHAQYLASTSMDRTLKLYAI 504

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	162
FB|FBgn0261119	505	Prp19 "Prp19" [Drosophila mela	0.938	0.300	0.769	1.2e-63
UNIPROTKB|Q5ZMA2	505	PRPF19 "Pre-mRNA-processing fa	0.969	0.310	0.636	1.3e-54
UNIPROTKB|Q9UMS4	504	PRPF19 "Pre-mRNA-processing fa	0.956	0.307	0.645	1.3e-54
UNIPROTKB|Q08E38	504	PRPF19 "Pre-mRNA-processing fa	0.956	0.307	0.645	1.3e-54
UNIPROTKB|E2R8L3	513	PRPF19 "Uncharacterized protei	0.956	0.302	0.645	1.3e-54
MGI|MGI:106247	504	Prpf19 "PRP19/PSO4 pre-mRNA pr	0.956	0.307	0.645	1.3e-54
RGD|708496	504	Prpf19 "PRP19/PSO4 pre-mRNA pr	0.956	0.307	0.645	1.3e-54
UNIPROTKB|Q9JMJ4	504	Prpf19 "Pre-mRNA-processing fa	0.956	0.307	0.645	1.3e-54
UNIPROTKB|B2CCY7	504	PRPF19 "Nuclear matrix protein	0.956	0.307	0.645	1.6e-54
ZFIN|ZDB-GENE-030131-263	505	prp19 "PRP19/PSO4 homolog (S.	0.956	0.306	0.632	5.5e-54

FB|FBgn0261119 Prp19 "Prp19" [Drosophila melanogaster (taxid:7227)]

 Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
 Identities = 117/152 (76%), Positives = 135/152 (88%)

Query:    11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
             LTTAQ HPDGLIFG GT DSQV+IWDLK+Q NV +F    GPI A+SFSENGYYLATAAD
Sbjct:   353 LTTAQFHPDGLIFGTGTVDSQVKIWDLKEQSNVANFPGHTGPISAISFSENGYYLATAAD 412

Query:    71 ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN 130
             + CVKLWDLRKLKNFKT+QLD  YE++DLCFDQSGTY+A+AG+DVRV+LCKQWQEL +FN
Sbjct:   413 DACVKLWDLRKLKNFKTIQLDDGYEVKDLCFDQSGTYLAIAGSDVRVYLCKQWQELKVFN 472

Query:   131 EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
             +HTA+ TGVRFG HA YLAS+SMDRTLKLY++
Sbjct:   473 DHTALATGVRFGKHAQYLASTSMDRTLKLYAI 504

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS;TAS

GO:0005681 "spliceosomal complex" evidence=ISS;TAS

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

UNIPROTKB|Q5ZMA2 PRPF19 "Pre-mRNA-processing factor 19" [Gallus gallus (taxid:9031)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 100/157 (63%), Positives = 128/157 (81%)

Query:     6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYL 65
             + G  LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYL
Sbjct:   349 SSGCALTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYL 408

Query:    66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQE 125
             ATAAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E
Sbjct:   409 ATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTE 468

Query:   126 LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
             +  F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct:   469 ILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 505

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005819 "spindle" evidence=IEA

UNIPROTKB|Q9UMS4 PRPF19 "Pre-mRNA-processing factor 19" [Homo sapiens (taxid:9606)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query:     8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
             G +LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYLAT
Sbjct:   350 GCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLAT 409

Query:    68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
             AAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E+ 
Sbjct:   410 AADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEIL 469

Query:   128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
              F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct:   470 HFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IEA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000974 "Prp19 complex" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IDA

GO:0016607 "nuclear speck" evidence=IDA

GO:0000245 "spliceosomal complex assembly" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|Q08E38 PRPF19 "Pre-mRNA-processing factor 19" [Bos taurus (taxid:9913)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query:     8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
             G +LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYLAT
Sbjct:   350 GCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLAT 409

Query:    68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
             AAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E+ 
Sbjct:   410 AADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEIL 469

Query:   128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
              F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct:   470 HFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504

GO:0000974 "Prp19 complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005819 "spindle" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

UNIPROTKB|E2R8L3 PRPF19 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query:     8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
             G +LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYLAT
Sbjct:   359 GCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLAT 418

Query:    68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
             AAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E+ 
Sbjct:   419 AADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEIL 478

Query:   128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
              F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct:   479 HFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 513

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

MGI|MGI:106247 Prpf19 "PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query:     8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
             G +LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYLAT
Sbjct:   350 GCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLAT 409

Query:    68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
             AAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E+ 
Sbjct:   410 AADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEIL 469

Query:   128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
              F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct:   470 HFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0000245 "spliceosomal complex assembly" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0000974 "Prp19 complex" evidence=ISO

GO:0001833 "inner cell mass cell proliferation" evidence=IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISA;IDA

GO:0005681 "spliceosomal complex" evidence=ISA;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016607 "nuclear speck" evidence=ISO

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=IDA

GO:0045666 "positive regulation of neuron differentiation" evidence=ISA

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IMP

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|708496 Prpf19 "PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query:     8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
             G +LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYLAT
Sbjct:   350 GCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLAT 409

Query:    68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
             AAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E+ 
Sbjct:   410 AADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEIL 469

Query:   128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
              F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct:   470 HFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA;ISO

GO:0000245 "spliceosomal complex assembly" evidence=IEA;ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO;ISS

GO:0000974 "Prp19 complex" evidence=IEA;ISO;ISS

GO:0001833 "inner cell mass cell proliferation" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO

GO:0005811 "lipid particle" evidence=IEA;ISO

GO:0005819 "spindle" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA;ISO

GO:0016607 "nuclear speck" evidence=IEA;ISO

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA;ISO

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA;ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

GO:0005681 "spliceosomal complex" evidence=ISO

UNIPROTKB|Q9JMJ4 Prpf19 "Pre-mRNA-processing factor 19" [Rattus norvegicus (taxid:10116)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query:     8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
             G +LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYLAT
Sbjct:   350 GCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLAT 409

Query:    68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
             AAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E+ 
Sbjct:   410 AADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEIL 469

Query:   128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
              F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct:   470 HFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL 504

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IEA

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IEA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|B2CCY7 PRPF19 "Nuclear matrix protein 200" [Sus scrofa (taxid:9823)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 100/155 (64%), Positives = 128/155 (82%)

Query:     8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
             G +LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GPI +++FSENGYYLAT
Sbjct:   350 GCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLAT 409

Query:    68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
             AAD++ VKLWDLRKLKNFKTLQLD N+E++ L FDQSGTY+A+ GTDV++++CKQW E+ 
Sbjct:   410 AADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYICKQWTEIL 469

Query:   128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
              F EH+ + TGV FG HA ++AS+ MDR+LK YSL
Sbjct:   470 HFTEHSGVTTGVAFGHHAKFIASTGMDRSLKFYSL 504

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0048711 "positive regulation of astrocyte differentiation" evidence=IEA

GO:0048026 "positive regulation of mRNA splicing, via spliceosome" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0000974 "Prp19 complex" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=IEA

ZFIN|ZDB-GENE-030131-263 prp19 "PRP19/PSO4 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 98/155 (63%), Positives = 126/155 (81%)

Query:     8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
             G  LT AQ HPDGLIFG GT DSQ++IWDLK++ NV +F   +GP+ A++FSENGYYLAT
Sbjct:   351 GCALTCAQFHPDGLIFGTGTGDSQIKIWDLKERTNVANFPGHSGPVTAIAFSENGYYLAT 410

Query:    68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA 127
              A ++ +KLWDLRKLKNFKT+ LD NYE++ L FDQSGTY+AV G+D+RV++CKQW E+ 
Sbjct:   411 GAQDSSLKLWDLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVL 470

Query:   128 MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
              F++H+ +VTGV FG HA +LAS+ MDR+LK YSL
Sbjct:   471 NFSDHSGLVTGVAFGEHAQFLASTGMDRSLKFYSL 505

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IGI;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZMA2	PRP19_CHICK	No assigned EC number	0.6369	0.9691	0.3108	yes	N/A
Q9UMS4	PRP19_HUMAN	No assigned EC number	0.6451	0.9567	0.3075	yes	N/A
Q9JMJ4	PRP19_RAT	No assigned EC number	0.6451	0.9567	0.3075	yes	N/A
Q08E38	PRP19_BOVIN	No assigned EC number	0.6451	0.9567	0.3075	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	162
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-18
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-08
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	9e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 89.3 bits (222), Expect = 4e-22
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 3/152 (1%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE 71
            +    PDG      + D  +++WDL+  K V       G + +++FS +G  L +++ +
Sbjct: 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198

Query: 72  NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF 129
             +KLWDL   K   TL+   N  +  + F   G  +A    D  +RV+  +  + +   
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENG-VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
           + HT  VT + +      LAS S D T++++ 
Sbjct: 258 SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.8 bits (218), Expect = 1e-21
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 9/156 (5%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE 71
           T     PDG +   G+ D  +++WDL+  + +   +   GP++ ++ S +G YLA+ + +
Sbjct: 13  TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD 72

Query: 72  NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW-----QEL 126
             ++LWDL   +  +TL    +Y +  + F   G  ++ +  D      K W     + L
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSY-VSSVAFSPDGRILSSSSRDKT---IKVWDVETGKCL 128

Query: 127 AMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
                HT  V  V F     ++ASSS D T+KL+ L
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 87.0 bits (216), Expect = 2e-21
 Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 3/149 (2%)

Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
             PDG I    + D  +++WD++  K +T  +     + +++FS +G ++A+++ +  +K
Sbjct: 101 FSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160

Query: 76  LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHT 133
           LWDLR  K   TL      E+  + F   G  +  + +D  ++++     + L     H 
Sbjct: 161 LWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE 219

Query: 134 AMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
             V  V F    + LAS S D T++++ L
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDL 248

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 78.5 bits (194), Expect = 4e-18
 Identities = 40/156 (25%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
           +       DG     G+SD  +++WDL+  + V         + +++FS +G  L++++ 
Sbjct: 54  VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113

Query: 71  ENCVKLWDLRKLKNFKTLQ--LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQEL 126
           +  +K+WD+   K   TL+   D    +  + F   GT++A +  D  ++++  +  + +
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDW---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170

Query: 127 AMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           A    HT  V  V F      L SSS D T+KL+ L
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 74.4 bits (181), Expect = 4e-16
 Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 6/151 (3%)

Query: 17  HPDG-LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENG-YYLATAADENCV 74
            PDG L+    + D  +++WDL+  K ++       P+ +L+FS +G   +A+ + +  +
Sbjct: 164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223

Query: 75  KLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW-QELAMFNE 131
           +LWDL   K  ++  L  + +     F   G+ +A   +D  +R++  +     L   + 
Sbjct: 224 RLWDLSTGKLLRST-LSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282

Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           H++ V  V F      LAS S D T++L+ L
Sbjct: 283 HSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 67.4 bits (163), Expect = 1e-13
 Identities = 38/152 (25%), Positives = 62/152 (40%), Gaps = 6/152 (3%)

Query: 17  HPDG-LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
            PDG L+   G+SD  +++WDL   K +             SFS +G  LA+ + +  ++
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIR 266

Query: 76  LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLC----KQWQELAMFNE 131
           LWDLR   +        +  +  + F   G  +A   +D  V L      +         
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKG 326

Query: 132 HTAMVTGVRFGTHAHYLASS-SMDRTLKLYSL 162
           H   V+ + F      L S  S D T++L+ L
Sbjct: 327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 65.1 bits (157), Expect = 6e-13
 Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKN-VTDFQLDAGPIQALSFSENGYYLATAADENCV 74
             PDG +   G+SD  +++WDL+   + +      +  + +++FS +G  LA+ + +  V
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 75  KLWDLRKLKNFKTLQLDPNY-EIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFN 130
           +LWDL   K   +L L  +   +  L F   G+ +   G+D   +R++  +  + L    
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 131 EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
            H+  V  V F      ++S S D T++L+ L
Sbjct: 369 GHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDL 399

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 63.9 bits (156), Expect = 7e-13
 Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 51  GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAV 110
           G +  ++FS +G  LAT + +  +K+WDL   +  +TL+      +RD+     GTY+A 
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLAS 68

Query: 111 AGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
             +D  +R++  +  + +     HT+ V+ V F      L+SSS D+T+K++ +
Sbjct: 69  GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.3 bits (155), Expect = 1e-12
 Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%)

Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--NVTDFQLDAGPIQALSFSENGYYLATA 68
           + +    PDG +   G+SD  V++WDL+  K  +    +   GP+ +LSFS +G  L + 
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346

Query: 69  -ADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQE 125
            +D+  ++LWDLR  K  KTL+   N  +  + F   G  ++   TD  VR++       
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSN--VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSL 404

Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           L   + HT+ VT + F      LAS S D T++L+ L
Sbjct: 405 LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.6 bits (140), Expect = 1e-10
 Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 9/162 (5%)

Query: 10  TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF--QLDAGPIQALSF-SENGYYLA 66
           ++T+    PDG +   G+SD  +++WDL   + +      L    +  L+  S +G  + 
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126

Query: 67  TAADE--NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCK 121
            A+      VKLWDL             +  +  L F   G  +A   +    ++++  +
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 122 QWQELAMFNEHTAMVTGVRF-GTHAHYLASSSMDRTLKLYSL 162
             + L+    HT  V+ + F       +AS S D T++L+ L
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.7 bits (130), Expect = 2e-09
 Identities = 22/85 (25%), Positives = 41/85 (48%)

Query: 7   GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLA 66
           G   + +    PDG +   G++D  V++WDL     + +       + +L FS +G  LA
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428

Query: 67  TAADENCVKLWDLRKLKNFKTLQLD 91
           + + +N ++LWDL+      +   D
Sbjct: 429 SGSSDNTIRLWDLKTSLKSVSFSPD 453

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 12/161 (7%)

Query: 10  TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA 69
           +L +      G++     SDS V + DL    +    +     I +++FS +G  L + +
Sbjct: 29  SLLSLGSSESGILLLALLSDSLVSLPDL----SSLLLRGHEDSITSIAFSPDGELLLSGS 84

Query: 70  DENCVKLWDLRKLKN-FKTLQLDPNYEIRDLCF-DQSGTYMAVAGTD----VRVF-LCKQ 122
            +  +KLWDL   +   K+L+   +  +  L      G  + +A +     V+++ L   
Sbjct: 85  SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144

Query: 123 WQELAMFNEHTAMVTGVRFGTHAHYLAS-SSMDRTLKLYSL 162
            + +     H+  VT + F      LAS SS+D T+KL+ L
Sbjct: 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Length = 466

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 44.3 bits (104), Expect = 9e-06
 Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 14/142 (9%)

Query: 29  DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLKNFKT 87
           +  VQ+WD+ + + VT+ +     + ++ +S  +   LA+ +D+  VKLW + +  +  T
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613

Query: 88  LQLDPNYEIRDLCFDQ----SGTYMAVAGTDVRVF---LCKQWQELAMFNEHTAMVTGVR 140
           ++   N     +C  Q    SG  +A    D +V+   L      L     H+  V+ VR
Sbjct: 614 IKTKAN-----ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR 668

Query: 141 FGTHAHYLASSSMDRTLKLYSL 162
           F   +  L SSS D TLKL+ L
Sbjct: 669 F-VDSSTLVSSSTDNTLKLWDL 689

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 122 QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
             + L     HT  VT V F     YLAS S D T+KL+ 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.5 bits (90), Expect = 5e-05
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 123 WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
            + L     HT  VT V F    + LAS S D T++++ 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 12/38 (31%), Positives = 24/38 (63%)

Query: 41 KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
          K +   +   GP+ +++FS +G  LA+ +D+  V++WD
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 39 KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
            + +   +   GP+ +++FS +G YLA+ +D+  +KLWD
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	162
KOG0272|consensus	459		100.0
KOG0291|consensus	893		100.0
KOG0272|consensus	459		100.0
KOG0279|consensus	315		100.0
KOG0263|consensus	707		100.0
KOG0271|consensus	480		100.0
KOG0263|consensus	707		99.98
KOG0289|consensus	506		99.97
KOG0315|consensus	311		99.97
KOG0286|consensus	343		99.97
KOG0266|consensus	456		99.97
KOG0266|consensus	456		99.97
KOG0275|consensus	508		99.96
KOG0285|consensus	460		99.96
KOG0284|consensus	464		99.96
KOG0292|consensus	1202		99.96
KOG0645|consensus	312		99.96
KOG0273|consensus	524		99.96
PTZ00421	493	coronin; Provisional	99.95
KOG0284|consensus	464		99.95
KOG0271|consensus	480		99.95
KOG0645|consensus	312		99.95
KOG0273|consensus	524		99.95
KOG0319|consensus	775		99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0279|consensus	315		99.95
KOG0276|consensus	794		99.95
KOG0286|consensus	343		99.95
KOG0318|consensus	603		99.94
KOG0282|consensus	503		99.94
KOG0315|consensus	311		99.94
KOG0276|consensus	794		99.94
KOG0640|consensus	430		99.94
KOG0295|consensus	406		99.94
KOG0310|consensus	487		99.94
KOG0283|consensus	712		99.94
KOG0318|consensus	603		99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0265|consensus	338		99.93
KOG0305|consensus	484		99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG0278|consensus	334		99.93
KOG0292|consensus	1202		99.93
KOG0277|consensus	311		99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
KOG0267|consensus	825		99.93
KOG0295|consensus	406		99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
KOG0316|consensus	307		99.92
KOG0289|consensus	506		99.92
KOG0973|consensus	942		99.92
KOG0282|consensus	503		99.92
KOG0319|consensus	775		99.92
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
KOG0264|consensus	422		99.92
KOG0285|consensus	460		99.92
KOG0269|consensus	839		99.92
KOG0296|consensus	399		99.92
KOG0313|consensus	423		99.91
KOG0277|consensus	311		99.91
KOG0265|consensus	338		99.91
KOG0305|consensus	484		99.91
PTZ00420	568	coronin; Provisional	99.91
KOG1446|consensus	311		99.91
KOG0291|consensus	893		99.9
KOG0294|consensus	362		99.9
KOG0306|consensus	888		99.9
KOG1407|consensus	313		99.9
KOG0641|consensus	350		99.9
KOG0306|consensus	888		99.9
KOG0281|consensus	499		99.9
KOG0310|consensus	487		99.9
KOG0269|consensus	839		99.89
KOG0316|consensus	307		99.89
KOG4283|consensus	397		99.89
KOG0639|consensus	705		99.89
KOG1273|consensus	405		99.89
KOG0772|consensus	641		99.89
KOG0274|consensus	537		99.89
KOG0293|consensus	519		99.88
KOG0643|consensus	327		99.88
KOG2096|consensus	420		99.88
KOG0973|consensus	942		99.88
KOG0640|consensus	430		99.88
KOG0308|consensus	735		99.88
KOG0302|consensus	440		99.88
KOG0646|consensus	476		99.88
KOG0293|consensus	519		99.87
KOG0268|consensus	433		99.87
KOG0643|consensus	327		99.87
KOG1446|consensus	311		99.87
KOG0647|consensus	347		99.87
KOG0281|consensus	499		99.86
KOG1274|consensus	933		99.86
KOG0299|consensus	479		99.86
KOG0264|consensus	422		99.86
KOG1539|consensus	910		99.85
KOG0267|consensus	825		99.85
KOG0313|consensus	423		99.85
KOG0283|consensus	712		99.85
KOG0300|consensus	481		99.85
KOG0772|consensus	641		99.85
KOG0641|consensus	350		99.84
KOG0270|consensus	463		99.84
KOG1407|consensus	313		99.84
KOG1332|consensus	299		99.84
KOG0288|consensus	459		99.84
KOG1332|consensus	299		99.84
KOG0278|consensus	334		99.84
KOG0647|consensus	347		99.83
KOG0275|consensus	508		99.83
KOG0308|consensus	735		99.82
KOG0274|consensus	537		99.82
KOG1036|consensus	323		99.82
KOG0268|consensus	433		99.82
KOG2394|consensus	636		99.82
KOG0302|consensus	440		99.82
KOG0296|consensus	399		99.81
KOG0288|consensus	459		99.8
KOG0299|consensus	479		99.8
KOG2445|consensus	361		99.8
KOG0301|consensus	745		99.8
KOG1408|consensus	1080		99.79
KOG0322|consensus	323		99.79
KOG1274|consensus	933		99.79
KOG0639|consensus	705		99.79
KOG0290|consensus	364		99.78
KOG0294|consensus	362		99.78
KOG1188|consensus	376		99.78
KOG0771|consensus	398		99.78
KOG0307|consensus	1049		99.77
KOG2096|consensus	420		99.77
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.77
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.77
KOG0301|consensus	745		99.77
KOG2055|consensus	514		99.76
KOG1036|consensus	323		99.76
KOG2048|consensus	691		99.76
KOG4328|consensus	498		99.76
KOG1009|consensus	434		99.75
KOG1007|consensus	370		99.75
KOG0646|consensus	476		99.75
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.75
KOG1539|consensus	910		99.74
KOG1063|consensus	764		99.74
KOG1007|consensus	370		99.74
KOG0300|consensus	481		99.74
KOG4283|consensus	397		99.73
KOG2445|consensus	361		99.73
KOG4378|consensus	673		99.73
KOG2106|consensus	626		99.73
KOG0303|consensus	472		99.73
KOG1523|consensus	361		99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.7
KOG1063|consensus	764		99.69
KOG2055|consensus	514		99.68
KOG1034|consensus	385		99.68
KOG0303|consensus	472		99.67
KOG2110|consensus	391		99.67
KOG0649|consensus	325		99.67
KOG2048|consensus	691		99.66
KOG0650|consensus	733		99.66
KOG2106|consensus	626		99.66
KOG1445|consensus	1012		99.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.65
KOG0270|consensus	463		99.65
KOG1009|consensus	434		99.64
KOG1538|consensus	1081		99.64
KOG0642|consensus	577		99.64
KOG2110|consensus	391		99.64
KOG0649|consensus	325		99.64
KOG1445|consensus	1012		99.63
KOG0650|consensus	733		99.63
KOG2919|consensus	406		99.62
KOG2919|consensus	406		99.62
KOG0321|consensus	720		99.62
KOG4378|consensus	673		99.62
KOG1034|consensus	385		99.6
KOG1524|consensus	737		99.6
KOG1524|consensus	737		99.6
KOG0974|consensus	967		99.59
KOG0321|consensus	720		99.58
COG2319	466	FOG: WD40 repeat [General function prediction only	99.57
KOG1188|consensus	376		99.57
KOG0307|consensus	1049		99.57
PRK11028	330	6-phosphogluconolactonase; Provisional	99.56
KOG1408|consensus	1080		99.55
PRK01742	429	tolB translocation protein TolB; Provisional	99.55
KOG1273|consensus	405		99.55
KOG4328|consensus	498		99.54
KOG1963|consensus	792		99.54
KOG3881|consensus	412		99.54
KOG4497|consensus	447		99.53
KOG1272|consensus	545		99.53
KOG1310|consensus	758		99.52
KOG2394|consensus	636		99.51
KOG1587|consensus	555		99.51
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
PRK01742	429	tolB translocation protein TolB; Provisional	99.49
PRK11028	330	6-phosphogluconolactonase; Provisional	99.49
KOG1517|consensus	1387		99.49
KOG4547|consensus	541		99.49
KOG1310|consensus	758		99.48
KOG1538|consensus	1081		99.48
KOG0642|consensus	577		99.47
KOG1523|consensus	361		99.47
KOG2139|consensus	445		99.47
KOG2321|consensus	703		99.46
KOG2111|consensus	346		99.44
KOG2139|consensus	445		99.44
PRK05137	435	tolB translocation protein TolB; Provisional	99.42
PRK04922	433	tolB translocation protein TolB; Provisional	99.41
PRK03629	429	tolB translocation protein TolB; Provisional	99.4
KOG0322|consensus	323		99.37
KOG0771|consensus	398		99.37
KOG1272|consensus	545		99.37
KOG3914|consensus	390		99.36
KOG0644|consensus	1113		99.36
KOG2111|consensus	346		99.36
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.35
KOG0644|consensus	1113		99.35
KOG4227|consensus	609		99.33
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.32
PRK03629	429	tolB translocation protein TolB; Provisional	99.3
KOG1240|consensus	1431		99.28
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.26
KOG1963|consensus	792		99.24
KOG1587|consensus	555		99.23
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.23
KOG4227|consensus	609		99.22
KOG3881|consensus	412		99.22
KOG0280|consensus	339		99.22
PRK02889	427	tolB translocation protein TolB; Provisional	99.2
KOG0290|consensus	364		99.19
KOG1517|consensus	1387		99.18
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.17
PRK04792	448	tolB translocation protein TolB; Provisional	99.16
PRK00178	430	tolB translocation protein TolB; Provisional	99.16
PRK05137	435	tolB translocation protein TolB; Provisional	99.16
PRK04922	433	tolB translocation protein TolB; Provisional	99.15
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.11
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.1
KOG1064|consensus	2439		99.1
PRK01029	428	tolB translocation protein TolB; Provisional	99.09
KOG0974|consensus	967		99.09
PRK01029	428	tolB translocation protein TolB; Provisional	99.09
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.08
KOG2321|consensus	703		99.06
KOG4547|consensus	541		99.02
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.01
KOG1334|consensus	559		99.0
KOG0280|consensus	339		98.98
KOG2315|consensus	566		98.97
KOG2314|consensus	698		98.97
KOG1354|consensus	433		98.97
KOG1275|consensus	1118		98.95
KOG4497|consensus	447		98.94
KOG2041|consensus	1189		98.94
PRK00178	430	tolB translocation protein TolB; Provisional	98.9
KOG2066|consensus	846		98.89
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.88
KOG1409|consensus	404		98.88
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.87
PRK04792	448	tolB translocation protein TolB; Provisional	98.86
COG4946	668	Uncharacterized protein related to the periplasmic	98.85
KOG1409|consensus	404		98.83
KOG0309|consensus	1081		98.83
KOG2315|consensus	566		98.81
KOG4714|consensus	319		98.78
COG4946	668	Uncharacterized protein related to the periplasmic	98.77
KOG1240|consensus	1431		98.77
KOG1334|consensus	559		98.77
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.77
KOG3914|consensus	390		98.77
KOG2695|consensus	425		98.73
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.73
KOG1354|consensus	433		98.72
KOG0309|consensus	1081		98.71
KOG4532|consensus	344		98.69
PRK04043	419	tolB translocation protein TolB; Provisional	98.67
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.67
KOG1064|consensus	2439		98.65
KOG2066|consensus	846		98.56
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.55
KOG4532|consensus	344		98.55
KOG4640|consensus	665		98.54
PRK04043	419	tolB translocation protein TolB; Provisional	98.53
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.53
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.49
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.47
KOG1912|consensus	1062		98.46
KOG4714|consensus	319		98.46
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.45
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.45
KOG2114|consensus	933		98.43
KOG4190|consensus	1034		98.41
KOG1832|consensus	1516		98.4
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.38
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.37
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.37
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.36
KOG1645|consensus	463		98.35
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.33
KOG2695|consensus	425		98.32
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.31
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.21
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.2
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.17
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.16
KOG1920|consensus	1265		98.14
KOG1912|consensus	1062		98.12
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.09
KOG2314|consensus	698		98.08
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	98.08
KOG2114|consensus	933		98.07
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.06
PRK02888	635	nitrous-oxide reductase; Validated	98.05
KOG3621|consensus	726		98.04
KOG0882|consensus	558		98.04
PRK02888	635	nitrous-oxide reductase; Validated	98.01
KOG1920|consensus	1265		97.97
KOG4190|consensus	1034		97.96
KOG3617|consensus	1416		97.89
KOG0882|consensus	558		97.85
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.85
KOG2041|consensus	1189		97.79
KOG1008|consensus	783		97.78
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.75
KOG1008|consensus	783		97.74
KOG3617|consensus	1416		97.71
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.69
KOG2079|consensus	1206		97.66
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.66
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.64
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.63
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.63
KOG2079|consensus	1206		97.57
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.53
PRK13616	591	lipoprotein LpqB; Provisional	97.52
KOG1645|consensus	463		97.5
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.46
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.44
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.43
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.37
KOG3621|consensus	726		97.37
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.34
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.28
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.27
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.23
KOG4640|consensus	665		97.22
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.2
KOG4649|consensus	354		97.14
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.14
KOG2395|consensus	644		97.09
PRK13684	334	Ycf48-like protein; Provisional	97.06
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.0
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.0
KOG1275|consensus	1118		97.0
PLN00033	398	photosystem II stability/assembly factor; Provisio	96.96
KOG2444|consensus	238		96.93
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.82
KOG1832|consensus	1516		96.74
PRK13616	591	lipoprotein LpqB; Provisional	96.73
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.7
COG3391	381	Uncharacterized conserved protein [Function unknow	96.62
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.55
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.52
PHA02713	557	hypothetical protein; Provisional	96.5
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.49
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.49
KOG2377|consensus	657		96.48
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.46
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.38
KOG2444|consensus	238		96.33
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	96.3
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.18
KOG1916|consensus	1283		96.08
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.06
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.98
COG3391	381	Uncharacterized conserved protein [Function unknow	95.84
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.74
KOG2395|consensus	644		95.72
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.62
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.61
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.51
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.11
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.1
KOG1897|consensus	1096		95.1
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.96
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.78
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.72
KOG3630|consensus	1405		94.72
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.67
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.64
KOG4499|consensus	310		94.56
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.5
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.31
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.24
KOG4460|consensus	741		94.21
KOG4499|consensus	310		94.09
KOG4441|consensus	571		93.96
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.84
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.74
KOG1916|consensus	1283		93.71
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.71
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.7
KOG4441|consensus	571		93.63
KOG2377|consensus	657		93.56
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.55
KOG4649|consensus	354		93.47
PHA03098	534	kelch-like protein; Provisional	93.44
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.41
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.29
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.27
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.06
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.02
PHA02790	480	Kelch-like protein; Provisional	92.88
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.78
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.76
KOG2280|consensus	829		92.69
PHA02713	557	hypothetical protein; Provisional	92.55
KOG2247|consensus	615		92.52
KOG3630|consensus	1405		92.12
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.11
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.98
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	91.84
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	91.79
PRK10115	686	protease 2; Provisional	91.7
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.58
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	91.34
KOG4460|consensus	741		90.91
KOG1900|consensus	1311		90.88
KOG3616|consensus	1636		90.11
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.09
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	89.95
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	89.82
KOG2109|consensus	788		89.4
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.27
KOG1897|consensus	1096		88.78
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	88.59
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	88.54
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.56
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.49
PRK13684	334	Ycf48-like protein; Provisional	87.41
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	87.02
COG4590	733	ABC-type uncharacterized transport system, permeas	86.48
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	86.31
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	85.82
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	85.65
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	85.37
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.18
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	84.3
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	84.06
COG5167	776	VID27 Protein involved in vacuole import and degra	83.9
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	83.53
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	83.39
KOG1898|consensus	1205		83.0
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	82.72
PLN00033	398	photosystem II stability/assembly factor; Provisio	81.21
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	81.18
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	80.69
PHA03098	534	kelch-like protein; Provisional	80.12

>KOG0272|consensus

Probab=100.00  E-value=1.2e-35  Score=211.35  Aligned_cols=156  Identities=26%  Similarity=0.497  Sum_probs=146.4

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .-|..+|.+++|+|||.++++|+.|..-||||+|+++.++.+.+|..+|.+|+|+|+|..|+||+.|+++++||++..+.
T Consensus       300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE  379 (459)
T ss_pred             cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             eeEEeeCCCCCeeEEEECC-CCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         85 FKTLQLDPNYEIRDLCFDQ-SGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +..+..| ...|..++|+| .|.++++++.|  .++|.-..|++++.+.+|...|.++..+|++++++|++.|+++++|.
T Consensus       380 ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  380 LYTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ceecccc-cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            7777664 45699999999 78999999998  78888899999999999999999999999999999999999999995

>KOG0291|consensus

Probab=100.00  E-value=1.2e-32  Score=207.68  Aligned_cols=159  Identities=23%  Similarity=0.480  Sum_probs=149.0

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+.|...+++++++|||+++|+|+.||+|+|||.+++-++.+|..|...|++++|+..++.+++.+.||+|+.||+...+
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr  425 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR  425 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ..+++....+....|++..|.|..+..|+.|   +.+|..++++.+..+.+|.+||.+++|+|+++.|+|+|+|.+||+|
T Consensus       426 NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  426 NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW  505 (893)
T ss_pred             eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence            8888876666667899999999999999877   7889999999999999999999999999999999999999999999


Q ss_pred             eC
Q psy12456        161 SL  162 (162)
Q Consensus       161 ~~  162 (162)
                      |+
T Consensus       506 ~i  507 (893)
T KOG0291|consen  506 DI  507 (893)
T ss_pred             Ee
Confidence            85

>KOG0272|consensus

Probab=100.00  E-value=7e-34  Score=202.39  Aligned_cols=156  Identities=22%  Similarity=0.401  Sum_probs=144.8

Q ss_pred             CCCCcEEEEEeCCC--CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPD--GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~--g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      -|...|.++.|||.  +.-+|+++.||++++|++++..++..+++|...|..++|+|+|++|++++.|.+-++||+++.+
T Consensus       215 gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~  294 (459)
T KOG0272|consen  215 GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS  294 (459)
T ss_pred             ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch
Confidence            35678899999996  6789999999999999999999999999999999999999999999999999999999999877


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .+.....| ...|.+++|.|+|.++++|+-|  .+||+.+++..+..+.+|.++|.+++|+|+|..+||||.|++++|||
T Consensus       295 ElL~QEGH-s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  295 ELLLQEGH-SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD  373 (459)
T ss_pred             hhHhhccc-ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence            66555554 4579999999999999999988  79999999999999999999999999999999999999999999999


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      |
T Consensus       374 L  374 (459)
T KOG0272|consen  374 L  374 (459)
T ss_pred             e
Confidence            6

>KOG0279|consensus

Probab=100.00  E-value=8.6e-32  Score=183.33  Aligned_cols=155  Identities=19%  Similarity=0.295  Sum_probs=140.6

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      |...|+.++.++||+++.+++.|+++|+||+.++++.+.|.+|..-|.+++|++|...+++|+.|++|++|+...... .
T Consensus        62 HsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~  140 (315)
T KOG0279|consen   62 HSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-Y  140 (315)
T ss_pred             cceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-E
Confidence            677899999999999999999999999999999999999999999999999999999999999999999999865333 3


Q ss_pred             EEeeCC-CCCeeEEEECCC--CCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         87 TLQLDP-NYEIRDLCFDQS--GTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~~-~~~v~~~~~~~~--~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +...+. ..-|.|++|+|+  ..++++++.|  +++|+++..+....+-+|++.++.+.+||||..+++|+.||.+.+||
T Consensus       141 t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  141 TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence            333222 567999999998  7899999988  78999888888888999999999999999999999999999999999


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      |
T Consensus       221 L  221 (315)
T KOG0279|consen  221 L  221 (315)
T ss_pred             c
Confidence            6

>KOG0263|consensus

Probab=100.00  E-value=5.3e-32  Score=204.53  Aligned_cols=155  Identities=23%  Similarity=0.447  Sum_probs=145.3

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      |..+|..+.|+|+.++|++++.|+++|+|.+++...+-.+++|..||..++|+|.|.|++|++.|++-++|........+
T Consensus       450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR  529 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR  529 (707)
T ss_pred             CCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999987766666


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .+..| -..+.|+.|+|+..|+++||.|  +++|+..++..++.|.+|+++|++++|||+|++|++|+.|+.|++||+
T Consensus       530 ifagh-lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl  606 (707)
T KOG0263|consen  530 IFAGH-LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL  606 (707)
T ss_pred             hhccc-ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence            66654 4579999999999999999998  889999999999999999999999999999999999999999999996

>KOG0271|consensus

Probab=100.00  E-value=1.4e-31  Score=189.24  Aligned_cols=156  Identities=24%  Similarity=0.405  Sum_probs=138.8

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .-|+++|-+++|+|+|+.||+|+.|.++|+||+.+..+..+.++|...|.+++|+|||+.|++|+.||+|++||.++.+.
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~  191 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ  191 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             eeEEeeCCCCCeeEEEECC-----CCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeE
Q psy12456         85 FKTLQLDPNYEIRDLCFDQ-----SGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      ....-..|...|.+++|.|     ...++++++.|  ++||+.....++..+.+|+.+|++++|.-++ ++.++|.|++|
T Consensus       192 ~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtI  270 (480)
T KOG0271|consen  192 IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTI  270 (480)
T ss_pred             ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceE
Confidence            5443333555799999976     56789999887  8899888888999999999999999997544 88999999999


Q ss_pred             EEee
Q psy12456        158 KLYS  161 (162)
Q Consensus       158 ~iw~  161 (162)
                      ++|+
T Consensus       271 kvw~  274 (480)
T KOG0271|consen  271 KVWR  274 (480)
T ss_pred             EEEE
Confidence            9997

>KOG0263|consensus

Probab=99.98  E-value=1.5e-31  Score=202.14  Aligned_cols=156  Identities=21%  Similarity=0.425  Sum_probs=148.0

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .|-.+|..++|+|-|.|||+++.|++.++|.....++.+.|.+|.+-|.+++|+|+..|+++||.|++|++||+.+...+
T Consensus       491 GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V  570 (707)
T KOG0263|consen  491 GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV  570 (707)
T ss_pred             CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +.|.. |..+|.+++|+|.|.++++|+.+  +++|++.....+..+.+|++.|.++.||.+|..||+|+.|.+|++||+
T Consensus       571 RiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  571 RIFTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             EEecC-CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            99987 45689999999999999999988  788888888899999999999999999999999999999999999995

>KOG0289|consensus

Probab=99.97  E-value=1e-30  Score=187.09  Aligned_cols=156  Identities=60%  Similarity=1.059  Sum_probs=147.1

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      .+..+++++|||||.+|++|..||.++|||+.++..+..|.+|.++|.+|+|+.+|.+|+++.+|+.|++||+|+.+.++
T Consensus       346 s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k  425 (506)
T KOG0289|consen  346 SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK  425 (506)
T ss_pred             ccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeC----CceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK----QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++......++.+++|.+.|++++.++.+++||.++    .|.++..+..|.+..+.+.|..+.++++++|.|+..+++.+
T Consensus       426 t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  426 TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            88887777899999999999999999999999987    79999999999999999999999999999999999998753

>KOG0315|consensus

Probab=99.97  E-value=1.5e-29  Score=170.37  Aligned_cols=157  Identities=20%  Similarity=0.399  Sum_probs=136.2

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .-+...|+++.|+.+|+++++|+.||+++|||+|....-+.|+ |..+|.++..+|+...|++|..+|.|++||+++..+
T Consensus        80 e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c  158 (311)
T KOG0315|consen   80 EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSC  158 (311)
T ss_pred             eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCcc
Confidence            3456789999999999999999999999999999976666676 558999999999999999999999999999998766


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeC--------CceEEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK--------QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      ...+..+...+++++...|+|.+++.+....+.|.|+        ..+++..++.|.+.+..+.+||++++||++|.|.+
T Consensus       159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt  238 (311)
T KOG0315|consen  159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT  238 (311)
T ss_pred             ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence            6666566667899999999999999988765544432        23567789999999999999999999999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      ++||++
T Consensus       239 v~iwn~  244 (311)
T KOG0315|consen  239 VKIWNT  244 (311)
T ss_pred             EEEEec
Confidence            999984

>KOG0286|consensus

Probab=99.97  E-value=6.6e-29  Score=170.37  Aligned_cols=157  Identities=22%  Similarity=0.384  Sum_probs=142.5

Q ss_pred             CCCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          5 GAGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         5 ~~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .-|..-|-+++++| +++.|++|+.|+..+|||+|.+..+++|.+|+.-|.++.|.|+|.-+++|+.|++.++||+|..+
T Consensus       183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~  262 (343)
T KOG0286|consen  183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ  262 (343)
T ss_pred             cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence            34667789999999 99999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ceeEEeeCC-CCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         84 NFKTLQLDP-NYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        84 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      .+..++... ..+|++++|+..|+++..|..|  ..+|+.-..+.+..+.+|...|+++..+|||.-++|||+|.++|||
T Consensus       263 ~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  263 ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW  342 (343)
T ss_pred             EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence            777765432 3579999999999999998777  6777776777888899999999999999999999999999999999


Q ss_pred             e
Q psy12456        161 S  161 (162)
Q Consensus       161 ~  161 (162)
                      .
T Consensus       343 ~  343 (343)
T KOG0286|consen  343 A  343 (343)
T ss_pred             C
Confidence            4

>KOG0266|consensus

Probab=99.97  E-value=1.3e-28  Score=185.84  Aligned_cols=157  Identities=25%  Similarity=0.530  Sum_probs=143.2

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe--eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc-c
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR-K   81 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~-~   81 (162)
                      +.+...|+++.|+|+|+++++++.|+.+++|++...+  ....+.+|...|..++|+|++.++++++.|+++++||+. .
T Consensus       156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~  235 (456)
T KOG0266|consen  156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD  235 (456)
T ss_pred             ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence            4567899999999999999999999999999997777  677778899999999999999999999999999999994 3


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      ...+..+..| ...+.+++|+|+++++++|+.|  ++||+++..+.++.+.+|+..|++++|+++++++++++.|+.|++
T Consensus       236 ~~~~~~l~gH-~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~v  314 (456)
T KOG0266|consen  236 GRNLKTLKGH-STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRV  314 (456)
T ss_pred             CeEEEEecCC-CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEE
Confidence            3567777765 4569999999999999999988  899999999999999999999999999999999999999999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus       315 wd~  317 (456)
T KOG0266|consen  315 WDL  317 (456)
T ss_pred             EEC
Confidence            995

>KOG0266|consensus

Probab=99.97  E-value=2.5e-28  Score=184.35  Aligned_cols=157  Identities=28%  Similarity=0.525  Sum_probs=141.0

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEEC-CCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDL-KKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      ..+...|+.++|+|+|+++++++.|++++|||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||+++.+
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence            356788999999999999999999999999999 4458889999999999999999999999999999999999999988


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCce--EEEEeecCccc--EEEEEECCCCceEEEeecCCeE
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ--ELAMFNEHTAM--VTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~~~~h~~~--v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      ....+..|.. .|..++|++++.++++++.|  +++|+...+.  ....+..+...  ++.+.|+|++.++++++.|+++
T Consensus       280 ~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~  358 (456)
T KOG0266|consen  280 CVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTL  358 (456)
T ss_pred             EEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeE
Confidence            8888887654 79999999999999999887  7888887776  45666666554  9999999999999999999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      ++||+
T Consensus       359 ~~w~l  363 (456)
T KOG0266|consen  359 KLWDL  363 (456)
T ss_pred             EEEEc
Confidence            99985

>KOG0275|consensus

Probab=99.96  E-value=1.9e-30  Score=180.93  Aligned_cols=153  Identities=22%  Similarity=0.392  Sum_probs=138.3

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeee--------eccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVT--------DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~--------~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      -+-|+.|+|||+|+++|+.||.|.+||+.+|+...        .|..++.+|.+++|+.|..++++|+.||.|++|.+++
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t  294 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET  294 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence            45688999999999999999999999999887543        3445678999999999999999999999999999999


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      ..+++.+.-.|...|+|+.|+.++..+++++.|  +++.-.++++.+++|.+|+..|+...|+++|..+++++.||+|++
T Consensus       295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkv  374 (508)
T KOG0275|consen  295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKV  374 (508)
T ss_pred             chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEE
Confidence            999888875555679999999999999999988  677778889999999999999999999999999999999999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      |+.
T Consensus       375 W~~  377 (508)
T KOG0275|consen  375 WHG  377 (508)
T ss_pred             ecC
Confidence            974

>KOG0285|consensus

Probab=99.96  E-value=3e-28  Score=171.26  Aligned_cols=157  Identities=20%  Similarity=0.315  Sum_probs=145.2

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      +-|-..|.++++.|.+.+|++|+.|++++|||+.+++...++.+|...|+.+++|+...|+++++.|++|+.||+...+-
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkv  227 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKV  227 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhh
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++.+..| -..|.++..+|.-..+++|+.|  ++||+.++...+..+.+|..+|..+.+.|....+++||.|++|++||+
T Consensus       228 IR~YhGH-lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl  306 (460)
T KOG0285|consen  228 IRHYHGH-LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL  306 (460)
T ss_pred             HHHhccc-cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence            7766554 4469999999999999999998  899999999999999999999999999988888899999999999996

>KOG0284|consensus

Probab=99.96  E-value=8.7e-29  Score=176.04  Aligned_cols=156  Identities=22%  Similarity=0.396  Sum_probs=139.9

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL-DAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      ++|.++|.++.|+++|.++++|+.+|.|++|+..... +..+++ |...|++++|+|+...+++++.|++|++||.+..+
T Consensus       135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k  213 (464)
T KOG0284|consen  135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK  213 (464)
T ss_pred             hhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc
Confidence            5789999999999999999999999999999986543 444554 45899999999999999999999999999998777


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ....+.. |...+.++.|+|..-++++++.|  +++|+.++..++.++.+|+..|..++|+|++.+|+|+|.|..++++|
T Consensus       214 ee~vL~G-HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~D  292 (464)
T KOG0284|consen  214 EERVLRG-HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFD  292 (464)
T ss_pred             hhheecc-CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEe
Confidence            6666655 56679999999999999999998  78899899999999999999999999999999999999999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       293 i  293 (464)
T KOG0284|consen  293 I  293 (464)
T ss_pred             h
Confidence            5

>KOG0292|consensus

Probab=99.96  E-value=2.9e-28  Score=187.08  Aligned_cols=157  Identities=18%  Similarity=0.412  Sum_probs=147.9

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      ......|..++|||...++.++--+|.|++||++.+..+..|..|++||++++|+|++.++++|+.|..|++|+++..++
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc   85 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC   85 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence            44566788999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +.++..|-++ |+.+.|++.-.+++++|.|  ++||+|.+.+++..+.+|...|.+..|.|....++|+|.|.+||+||+
T Consensus        86 lftL~GHlDY-VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi  164 (1202)
T KOG0292|consen   86 LFTLLGHLDY-VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI  164 (1202)
T ss_pred             hhhhccccce-eEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence            8887776664 9999999999999999998  999999999999999999999999999999999999999999999995

>KOG0645|consensus

Probab=99.96  E-value=8.4e-27  Score=158.57  Aligned_cols=155  Identities=25%  Similarity=0.449  Sum_probs=132.8

Q ss_pred             CCCCcEEEEEeCCC-CcEEEEeeCCCcEEEEECCCCee---eeec-cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456          6 AGGPTLTTAQLHPD-GLIFGIGTSDSQVQIWDLKKQKN---VTDF-QLDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         6 ~~~~~v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~~---~~~~-~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      .+...+-.++|||. |.+||+++.|..||+|+...+..   ...+ .+|...|++++|+|.|++|++||.|.++.+|.-.
T Consensus        12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~   91 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE   91 (312)
T ss_pred             CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence            45558999999997 99999999999999999874322   2222 3688999999999999999999999999999864


Q ss_pred             --cCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeC-----CceEEEEeecCcccEEEEEECCCCceEEEeec
Q psy12456         81 --KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK-----QWQELAMFNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        81 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                        .++.+..+.. |..+|.+++|+++|.|||+++.|..||.+.     .++.+..+++|..-|..+.|.|...+|+|+|.
T Consensus        92 ~~efecv~~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SY  170 (312)
T KOG0645|consen   92 DGEFECVATLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSY  170 (312)
T ss_pred             CCceeEEeeeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEecc
Confidence              4456677766 456899999999999999999998887763     34677889999999999999999999999999


Q ss_pred             CCeEEEee
Q psy12456        154 DRTLKLYS  161 (162)
Q Consensus       154 D~~i~iw~  161 (162)
                      |.+|++|+
T Consensus       171 DnTIk~~~  178 (312)
T KOG0645|consen  171 DNTIKVYR  178 (312)
T ss_pred             CCeEEEEe
Confidence            99999996

>KOG0273|consensus

Probab=99.96  E-value=3.1e-27  Score=170.69  Aligned_cols=160  Identities=24%  Similarity=0.415  Sum_probs=139.0

Q ss_pred             cccCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-----------------------------------------
Q psy12456          2 SASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-----------------------------------------   40 (162)
Q Consensus         2 ~~~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-----------------------------------------   40 (162)
                      ..-++|..+|.++.|+.+|.|+++++.||++.+||..++                                         
T Consensus       270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~  349 (524)
T KOG0273|consen  270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED  349 (524)
T ss_pred             hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC
Confidence            345689999999999999999999999999999998543                                         


Q ss_pred             eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCC---------CEEEEe
Q psy12456         41 KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSG---------TYMAVA  111 (162)
Q Consensus        41 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~~~~  111 (162)
                      .|+.++.+|.++|.++.|+|.+.+|++++.|+++++|..........++.|.+ .|-.+.|+|.+         ..++++
T Consensus       350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sa  428 (524)
T KOG0273|consen  350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASA  428 (524)
T ss_pred             CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEe
Confidence            23457778999999999999999999999999999999876666666666544 57777888754         467777


Q ss_pred             ccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        112 GTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       112 ~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +.|  +++|+...+.++..++.|..+|.+++|||+++++|+|+.|+.|.+|+.
T Consensus       429 s~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  429 SFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST  481 (524)
T ss_pred             ecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence            777  889999999999999999999999999999999999999999999974

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=6.8e-26  Score=171.61  Aligned_cols=156  Identities=13%  Similarity=0.290  Sum_probs=132.1

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC-------eeeeeccCCCCCEEEEEEccCC-CEEEEEeCCCeEEE
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ-------KNVTDFQLDAGPIQALSFSENG-YYLATAADENCVKL   76 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~d~~v~~   76 (162)
                      .|...|++++|+| ++++|++|+.||+|++||+.++       +++..+.+|...|.+++|+|++ ++|++++.|++|++
T Consensus        73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI  152 (493)
T PTZ00421         73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV  152 (493)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence            3567899999999 8899999999999999999764       3567888999999999999975 79999999999999


Q ss_pred             EEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCccc-EEEEEECCCCceEEEee-
Q psy12456         77 WDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAM-VTGVRFGTHAHYLASSS-  152 (162)
Q Consensus        77 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s-  152 (162)
                      ||+++.+....+..+ ...|.+++|+|++.++++++.|  +++|+.+..+.+..+..|... +..+.|.+++..+++++ 
T Consensus       153 WDl~tg~~~~~l~~h-~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~  231 (493)
T PTZ00421        153 WDVERGKAVEVIKCH-SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGC  231 (493)
T ss_pred             EECCCCeEEEEEcCC-CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence            999887766666544 4469999999999999999987  788888888888888888765 45677888877777654 


Q ss_pred             ---cCCeEEEeeC
Q psy12456        153 ---MDRTLKLYSL  162 (162)
Q Consensus       153 ---~D~~i~iw~~  162 (162)
                         .|+.|++||+
T Consensus       232 s~s~Dr~VklWDl  244 (493)
T PTZ00421        232 SKSQQRQIMLWDT  244 (493)
T ss_pred             CCCCCCeEEEEeC
Confidence               4899999995

>KOG0284|consensus

Probab=99.95  E-value=7.2e-28  Score=171.39  Aligned_cols=156  Identities=20%  Similarity=0.357  Sum_probs=138.3

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      ..-.++|+.+.|.|+|+.|++|+..|.+.+|+..+-.-...+++|+.+|+++.|+.++.++++|+.+|.|++|+.. ++.
T Consensus        93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn-mnn  171 (464)
T KOG0284|consen   93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN-MNN  171 (464)
T ss_pred             cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc-hhh
Confidence            5678999999999999999999999999999974433333456899999999999999999999999999999975 455


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +..++.++...|++++|+|+...+++++.|  ++||+....++.+.+.+|.-.|.++.|.|....++++|.|..|++||
T Consensus       172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD  250 (464)
T KOG0284|consen  172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD  250 (464)
T ss_pred             hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence            666667776789999999999999999988  78888887777778899999999999999999999999999999998

>KOG0271|consensus

Probab=99.95  E-value=3.5e-27  Score=167.06  Aligned_cols=156  Identities=24%  Similarity=0.378  Sum_probs=138.4

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEc-----------cCCC----------
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFS-----------ENGY----------   63 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~-----------~~~~----------   63 (162)
                      ..|..+|||+.|-.+| ++++|+.|++|++|+...|+..+.+++|...|+.++.+           |.+.          
T Consensus       244 sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~  322 (480)
T KOG0271|consen  244 SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK  322 (480)
T ss_pred             ccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence            4678899999999888 88999999999999999999999999999999999887           2222          


Q ss_pred             ---------------EEEEEeCCCeEEEEEcccCc-ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceE
Q psy12456         64 ---------------YLATAADENCVKLWDLRKLK-NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQE  125 (162)
Q Consensus        64 ---------------~l~s~~~d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~  125 (162)
                                     .|++|+.|.++.+|+-...+ .+.++..|.. .|..+.|+|+++++|+++.|  +++|+-++++.
T Consensus       323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~  401 (480)
T KOG0271|consen  323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF  401 (480)
T ss_pred             HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence                           49999999999999976443 4555555444 69999999999999999998  78898899999


Q ss_pred             EEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        126 LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       126 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +..|.+|-..|..++|+.|.++|++||.|.++++|++
T Consensus       402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V  438 (480)
T KOG0271|consen  402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV  438 (480)
T ss_pred             hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence            9999999999999999999999999999999999985

>KOG0645|consensus

Probab=99.95  E-value=1.2e-25  Score=152.96  Aligned_cols=156  Identities=18%  Similarity=0.386  Sum_probs=135.6

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC--eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ--KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      ..+.-.|.+++|+|.|++||+++-|.++.||.-..+  +.+..+++|...|.+++|+++|++|+++++|+.|-+|.+...
T Consensus        58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded  137 (312)
T KOG0645|consen   58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED  137 (312)
T ss_pred             ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence            456778999999999999999999999999975433  678899999999999999999999999999999999998632


Q ss_pred             ---cceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEe---CCceEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         83 ---KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLC---KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        83 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                         +....++.| ...|..+.|+|...+|++++.|  +++|..   ..|+.+..+.+|...|.+++|.|.|..+++++.|
T Consensus       138 dEfec~aVL~~H-tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD  216 (312)
T KOG0645|consen  138 DEFECIAVLQEH-TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD  216 (312)
T ss_pred             CcEEEEeeeccc-cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence               334445544 3468999999999999999998  666653   3578899999999999999999999999999999


Q ss_pred             CeEEEee
Q psy12456        155 RTLKLYS  161 (162)
Q Consensus       155 ~~i~iw~  161 (162)
                      ++++||.
T Consensus       217 ~tv~Iw~  223 (312)
T KOG0645|consen  217 GTVSIWR  223 (312)
T ss_pred             cceEeee
Confidence            9999996

>KOG0273|consensus

Probab=99.95  E-value=2.9e-26  Score=165.70  Aligned_cols=154  Identities=21%  Similarity=0.410  Sum_probs=133.3

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .....||+++|+.+|.+||+|+.||.+|+|+. .+..+.+|..|.+||.++.|+.+|+||++++.|+++.+||..+.+..
T Consensus       233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~  311 (524)
T KOG0273|consen  233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK  311 (524)
T ss_pred             CccCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence            34478999999999999999999999999995 57888999999999999999999999999999999999999887777


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +.+.++.. +-.++.|-.+. .+++++.|  ++|+-.....++.++.+|...|.+++|.|.+.+|+|+|.|++++||++
T Consensus       312 q~f~~~s~-~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  312 QQFEFHSA-PALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM  388 (524)
T ss_pred             EeeeeccC-CccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence            77776543 34667886555 45677778  556655666788999999999999999999999999999999999973

>KOG0319|consensus

Probab=99.95  E-value=1.3e-26  Score=174.69  Aligned_cols=155  Identities=19%  Similarity=0.353  Sum_probs=146.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      +|+.-|++++++|+.+++|+|+.|.+.+||++........+.+|...|.++.|+|..+.++++|.|++|++|.+.++.++
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl  540 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL  540 (775)
T ss_pred             hhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceee
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .++..|. ..|..+.|-.+++.+++++.|  +++|++++.++++.+..|...|++++-+|...+++||+.|+.|.+|.
T Consensus       541 kT~eGH~-~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  541 KTFEGHT-SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eeecCcc-ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            9998754 468888999999999998887  89999999999999999999999999999999999999999999994

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=3.8e-25  Score=168.95  Aligned_cols=155  Identities=15%  Similarity=0.340  Sum_probs=128.3

Q ss_pred             CCCCcEEEEEeCCC-CcEEEEeeCCCcEEEEECCCCe--------eeeeccCCCCCEEEEEEccCCCE-EEEEeCCCeEE
Q psy12456          6 AGGPTLTTAQLHPD-GLIFGIGTSDSQVQIWDLKKQK--------NVTDFQLDAGPIQALSFSENGYY-LATAADENCVK   75 (162)
Q Consensus         6 ~~~~~v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~--------~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~d~~v~   75 (162)
                      .|...|.+++|+|+ +.+||+|+.||+|+|||++++.        ++..+.+|...|.+++|+|++.. +++++.|++|+
T Consensus        72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIr  151 (568)
T PTZ00420         72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVN  151 (568)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEE
Confidence            46778999999996 8899999999999999997642        34567889999999999998875 57899999999


Q ss_pred             EEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEE-----EEECCCCceE
Q psy12456         76 LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTG-----VRFGTHAHYL  148 (162)
Q Consensus        76 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~-----~~~s~~~~~l  148 (162)
                      +||+++.+....+.  +...+.+++|+|+|.++++++.|  +++|+.+..+.+..+.+|.+.+..     ..|++++.++
T Consensus       152 IWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~I  229 (568)
T PTZ00420        152 IWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYI  229 (568)
T ss_pred             EEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEE
Confidence            99999876555443  33469999999999999988766  889999888888889999875433     3456888999


Q ss_pred             EEeecCC----eEEEeeC
Q psy12456        149 ASSSMDR----TLKLYSL  162 (162)
Q Consensus       149 ~s~s~D~----~i~iw~~  162 (162)
                      ++++.|+    .|+|||+
T Consensus       230 lTtG~d~~~~R~VkLWDl  247 (568)
T PTZ00420        230 LSTGFSKNNMREMKLWDL  247 (568)
T ss_pred             EEEEcCCCCccEEEEEEC
Confidence            9988774    7999995

>KOG0279|consensus

Probab=99.95  E-value=1.8e-25  Score=152.56  Aligned_cols=156  Identities=17%  Similarity=0.304  Sum_probs=133.1

Q ss_pred             CCCCCcEEEEEeCCC-CcEEEEeeCCCcEEEEECCC-----CeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q psy12456          5 GAGGPTLTTAQLHPD-GLIFGIGTSDSQVQIWDLKK-----QKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD   78 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd   78 (162)
                      ..|...|+.++..+. -.++.+++.|.++.+|++..     |.+++.|++|...|..++.++|+++.++++.|+++++||
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWD   91 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWD   91 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEE
Confidence            357788999999986 56889999999999999875     467889999999999999999999999999999999999


Q ss_pred             cccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeec--CcccEEEEEECCC--CceEEEee
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE--HTAMVTGVRFGTH--AHYLASSS  152 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~--h~~~v~~~~~s~~--~~~l~s~s  152 (162)
                      +.+.+..+.+..|.. .|.+++|+|+...+++|+.|  +++|+... +...++..  |..+|+++.|+|+  ..+++++|
T Consensus        92 l~~g~~t~~f~GH~~-dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s  169 (315)
T KOG0279|consen   92 LATGESTRRFVGHTK-DVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS  169 (315)
T ss_pred             ecCCcEEEEEEecCC-ceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc
Confidence            998887788877544 69999999999999999999  55555433 23333333  3789999999998  67999999


Q ss_pred             cCCeEEEeeC
Q psy12456        153 MDRTLKLYSL  162 (162)
Q Consensus       153 ~D~~i~iw~~  162 (162)
                      +|+++++||+
T Consensus       170 ~DktvKvWnl  179 (315)
T KOG0279|consen  170 WDKTVKVWNL  179 (315)
T ss_pred             CCceEEEEcc
Confidence            9999999996

>KOG0276|consensus

Probab=99.95  E-value=4.5e-26  Score=169.69  Aligned_cols=157  Identities=23%  Similarity=0.464  Sum_probs=146.5

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      ..+...|.++++||...++.++-.+|.|.|||.+++..+++|+..+-||++..|-+..+++++|+.|..|++|++.+.+.
T Consensus        10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek   89 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK   89 (794)
T ss_pred             hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee
Confidence            35788999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeC-CceEEEEeecCcccEEEEEECC-CCceEEEeecCCeEEEe
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCK-QWQELAMFNEHTAMVTGVRFGT-HAHYLASSSMDRTLKLY  160 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~-~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iw  160 (162)
                      +..+..|.++ |++++.+|...+++++|.|  +++|+|. .|.+.+.|++|+..|..++|+| |.+.|||+|.|++|++|
T Consensus        90 V~~FeAH~Dy-IR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW  168 (794)
T KOG0276|consen   90 VKTFEAHSDY-IRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW  168 (794)
T ss_pred             eEEeeccccc-eeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence            9999988775 9999999999999999999  7788875 5788899999999999999997 57899999999999999


Q ss_pred             eC
Q psy12456        161 SL  162 (162)
Q Consensus       161 ~~  162 (162)
                      .+
T Consensus       169 sl  170 (794)
T KOG0276|consen  169 SL  170 (794)
T ss_pred             Ec
Confidence            85

>KOG0286|consensus

Probab=99.95  E-value=2.1e-25  Score=153.25  Aligned_cols=155  Identities=19%  Similarity=0.338  Sum_probs=140.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC------eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ------KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      .....|-+++|+|.|+++|.|+-|+...||++.+.      +..+.+.+|.+.+.++.|-+| ..|++++.|.++.+||+
T Consensus        95 l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDi  173 (343)
T KOG0286|consen   95 LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDI  173 (343)
T ss_pred             cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEc
Confidence            34566788999999999999999999999999865      345678999999999999775 57889999999999999


Q ss_pred             ccCcceeEEeeCCCCCeeEEEECC-CCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         80 RKLKNFKTLQLDPNYEIRDLCFDQ-SGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      .+.+.+..+..| ...|.++.++| +++.+++|+-|  .++|+.+....+++|.+|...|++++|-|+|.-|++|+.|++
T Consensus       174 e~g~~~~~f~GH-~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t  252 (343)
T KOG0286|consen  174 ETGQQTQVFHGH-TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT  252 (343)
T ss_pred             ccceEEEEecCC-cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce
Confidence            998888888765 45799999999 89999999988  689999999999999999999999999999999999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      .|+||+
T Consensus       253 cRlyDl  258 (343)
T KOG0286|consen  253 CRLYDL  258 (343)
T ss_pred             eEEEee
Confidence            999996

>KOG0318|consensus

Probab=99.94  E-value=1.4e-25  Score=164.18  Aligned_cols=156  Identities=21%  Similarity=0.448  Sum_probs=120.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeee--eeccCCCCCEEEEEEccCCCEEEEE---------------
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV--TDFQLDAGPIQALSFSENGYYLATA---------------   68 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~---------------   68 (162)
                      -|...+|.+.++|.|.|+|+|...|+|||||....+.+  .+|+.-.++|..|+|++|++.++..               
T Consensus        57 EH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS  136 (603)
T KOG0318|consen   57 EHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDS  136 (603)
T ss_pred             cccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecC
Confidence            46889999999999999999999999999998764433  3455556788888888887655544               


Q ss_pred             ------------------------------eCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEE
Q psy12456         69 ------------------------------ADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVF  118 (162)
Q Consensus        69 ------------------------------~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~  118 (162)
                                                    ++|+++.+|+=..++-..++..|.+ -|+|+.|+|+|.++++++.|.+++
T Consensus       137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk-FV~~VRysPDG~~Fat~gsDgki~  215 (603)
T KOG0318|consen  137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK-FVNCVRYSPDGSRFATAGSDGKIY  215 (603)
T ss_pred             CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc-ceeeEEECCCCCeEEEecCCccEE
Confidence                                          4444444443322222222223333 499999999999999999996655


Q ss_pred             Ee--CCceEEEEee---cCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        119 LC--KQWQELAMFN---EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       119 ~~--~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .+  ++.+.+.++.   +|++.|.+++|+||++.++|+|.|.++||||+
T Consensus       216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV  264 (603)
T KOG0318|consen  216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV  264 (603)
T ss_pred             EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence            54  5667777777   89999999999999999999999999999995

>KOG0282|consensus

Probab=99.94  E-value=3.6e-27  Score=170.62  Aligned_cols=155  Identities=19%  Similarity=0.368  Sum_probs=142.2

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCC-CeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKK-QKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      -|..+|+++.|.| .+.+|++++.|+.|+|||+.. ++++++|.+|..+|++++|+++|..+++++.|+.+++||..+.+
T Consensus       212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~  291 (503)
T KOG0282|consen  212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ  291 (503)
T ss_pred             CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce
Confidence            4677899999999 999999999999999999987 78999999999999999999999999999999999999999988


Q ss_pred             ceeEEeeCCCCCeeEEEECCCC-CEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSG-TYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ....+..  ...+.|+.|+|++ ..+++|+.|  ++.|+.+..+.++++..|-+.|..+.|-++++.+++++.|++++||
T Consensus       292 ~~~~f~~--~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riW  369 (503)
T KOG0282|consen  292 VLSRFHL--DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIW  369 (503)
T ss_pred             EEEEEec--CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEE
Confidence            8877764  4468999999998 788888887  6678888888899999999999999999999999999999999999


Q ss_pred             eC
Q psy12456        161 SL  162 (162)
Q Consensus       161 ~~  162 (162)
                      +.
T Consensus       370 e~  371 (503)
T KOG0282|consen  370 EN  371 (503)
T ss_pred             Ec
Confidence            73

>KOG0315|consensus

Probab=99.94  E-value=5.6e-25  Score=148.41  Aligned_cols=155  Identities=22%  Similarity=0.392  Sum_probs=130.5

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc-CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc--
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ-LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK--   83 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~--   83 (162)
                      +..+|+++..||+..-|.+|..+|.|++||+......+.+. ....+|.++...|||.+++.+...|.+.+|++-+.+  
T Consensus       123 ~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~  202 (311)
T KOG0315|consen  123 HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA  202 (311)
T ss_pred             CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc
Confidence            45899999999987788899999999999998876665553 445789999999999999999999999999985432  


Q ss_pred             ----ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc-eEEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         84 ----NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW-QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        84 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                          .+.+++.|... +..+-+||++++|++++.|  ++||..... +....+++|.++++..+||.|++||++|+.|+.
T Consensus       203 s~l~P~~k~~ah~~~-il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~  281 (311)
T KOG0315|consen  203 SELEPVHKFQAHNGH-ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT  281 (311)
T ss_pred             ccceEhhheecccce-EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCc
Confidence                23445555554 7778899999999999998  677776655 455568899999999999999999999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      +++|++
T Consensus       282 ~rlW~~  287 (311)
T KOG0315|consen  282 ARLWDL  287 (311)
T ss_pred             eeeccc
Confidence            999985

>KOG0276|consensus

Probab=99.94  E-value=4.9e-26  Score=169.52  Aligned_cols=157  Identities=18%  Similarity=0.283  Sum_probs=143.1

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-eeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEccc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-KNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      +.+|..-|.+++.||...++.+++.|-+|++||.+.. .+.++|++|...|..++|+| |.+.+++++.|++|++|.+..
T Consensus        93 FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs  172 (794)
T KOG0276|consen   93 FEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS  172 (794)
T ss_pred             eeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC
Confidence            4578888999999999999999999999999999876 67789999999999999999 788999999999999999987


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCC--CEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeE
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSG--TYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      ..+..++..|.+ .|+|+++-+.|  .|+++|+.|  ++||++.+..+++++++|...|+.+.|.|.=..++|||.||++
T Consensus       173 ~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTv  251 (794)
T KOG0276|consen  173 PHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTV  251 (794)
T ss_pred             CCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccE
Confidence            777777776554 69999997754  799999998  8999999999999999999999999999999999999999999


Q ss_pred             EEee
Q psy12456        158 KLYS  161 (162)
Q Consensus       158 ~iw~  161 (162)
                      |||+
T Consensus       252 riWh  255 (794)
T KOG0276|consen  252 RIWN  255 (794)
T ss_pred             EEec
Confidence            9996

>KOG0640|consensus

Probab=99.94  E-value=6.8e-26  Score=157.18  Aligned_cols=156  Identities=21%  Similarity=0.435  Sum_probs=131.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC------------C------eeeeeccCCCCCEEEEEEccCCCEEEE
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK------------Q------KNVTDFQLDAGPIQALSFSENGYYLAT   67 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~------------~------~~~~~~~~~~~~v~~i~~~~~~~~l~s   67 (162)
                      .|.+++.+.+|+|||.++|+|+.|-.|+|+|+..            +      -.++++-.|..+|..+.|+|....|++
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS  189 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS  189 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence            4778899999999999999999999999999971            0      246777778899999999999999999


Q ss_pred             EeCCCeEEEEEcccCcceeEEe-eCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe---ecCcccEEEEEE
Q psy12456         68 AADENCVKLWDLRKLKNFKTLQ-LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF---NEHTAMVTGVRF  141 (162)
Q Consensus        68 ~~~d~~v~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~---~~h~~~v~~~~~  141 (162)
                      |+.|++|+++|+.+....+-++ +....++++++|+|.|.++++|..-  .++|+.++.++...-   ..|+..|+++.+
T Consensus       190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y  269 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY  269 (430)
T ss_pred             ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence            9999999999997543211111 1233579999999999999998654  899998888776553   469999999999


Q ss_pred             CCCCceEEEeecCCeEEEee
Q psy12456        142 GTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       142 s~~~~~l~s~s~D~~i~iw~  161 (162)
                      |+.+++.+++|.||.|++||
T Consensus       270 s~t~~lYvTaSkDG~IklwD  289 (430)
T KOG0640|consen  270 SSTGSLYVTASKDGAIKLWD  289 (430)
T ss_pred             cCCccEEEEeccCCcEEeec
Confidence            99999999999999999998

>KOG0295|consensus

Probab=99.94  E-value=4.4e-25  Score=155.32  Aligned_cols=155  Identities=15%  Similarity=0.304  Sum_probs=140.0

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      +...|+++.|-|.|.++++.+.|.+|+.||..++-++++|++|...|+.++.+.||..+++++.|.++++|-+.+.++..
T Consensus       192 h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~  271 (406)
T KOG0295|consen  192 HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA  271 (406)
T ss_pred             cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh
Confidence            56689999999999999999999999999999999999999999999999999999999999999999999998876555


Q ss_pred             EEeeCCCCCeeEEEECCC---------------CCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEE
Q psy12456         87 TLQLDPNYEIRDLCFDQS---------------GTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLA  149 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~---------------~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~  149 (162)
                      .+.. +..++.+++|.|.               ++++.+++.|  +++|+..+...+.++.+|..+|.+++|+|.|+|++
T Consensus       272 ~lR~-hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~  350 (406)
T KOG0295|consen  272 ELRE-HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL  350 (406)
T ss_pred             hhhc-cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE
Confidence            5554 3456888887662               2588888888  89999999999999999999999999999999999


Q ss_pred             EeecCCeEEEeeC
Q psy12456        150 SSSMDRTLKLYSL  162 (162)
Q Consensus       150 s~s~D~~i~iw~~  162 (162)
                      |+..|+++++||+
T Consensus       351 ScaDDktlrvwdl  363 (406)
T KOG0295|consen  351 SCADDKTLRVWDL  363 (406)
T ss_pred             EEecCCcEEEEEe
Confidence            9999999999996

>KOG0310|consensus

Probab=99.94  E-value=6.8e-25  Score=158.97  Aligned_cols=157  Identities=24%  Similarity=0.375  Sum_probs=135.7

Q ss_pred             CCCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccC
Q psy12456          5 GAGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         5 ~~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      .+|..+|..+.|+| ++..+++|+.|+.+++||+.+......+.+|...|++.+|+| .++.+++|+.||+|++||.|..
T Consensus       107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence            46888999999999 556788888899999999999887778999999999999999 4679999999999999999975


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCc-eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQW-QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      . .....+.+..+|..+++-|.|..+++++.+ ++||+...+ +.+.++..|...|+++.+..+++.|.|+|.|+.+++|
T Consensus       187 ~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVf  265 (487)
T KOG0310|consen  187 T-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVF  265 (487)
T ss_pred             C-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEE
Confidence            3 344556677889999999999999998776 999998754 5555556699999999999999999999999999999


Q ss_pred             eC
Q psy12456        161 SL  162 (162)
Q Consensus       161 ~~  162 (162)
                      |+
T Consensus       266 d~  267 (487)
T KOG0310|consen  266 DT  267 (487)
T ss_pred             Ec
Confidence            84

>KOG0283|consensus

Probab=99.94  E-value=2.2e-25  Score=169.92  Aligned_cols=155  Identities=18%  Similarity=0.355  Sum_probs=131.2

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC--------------------------------------------
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK--------------------------------------------   39 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~--------------------------------------------   39 (162)
                      .+++..+|.++.|++||+|||+|+.||.|+||.+..                                            
T Consensus       263 ~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~  342 (712)
T KOG0283|consen  263 SNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG  342 (712)
T ss_pred             ccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence            348899999999999999999999999999998754                                            


Q ss_pred             ----------------CeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECC
Q psy12456         40 ----------------QKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQ  103 (162)
Q Consensus        40 ----------------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~  103 (162)
                                      .+|++.|++|.+.|..++|+.+ ++|++++.|+||++|++...+++..|.  |..-|+|++|+|
T Consensus       343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnP  419 (712)
T KOG0283|consen  343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNP  419 (712)
T ss_pred             cCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecc
Confidence                            1356778899999999999976 589999999999999998878888875  344599999999


Q ss_pred             -CCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        104 -SGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       104 -~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                       |..|+++|+-|  ++||.....+.+ .+..-...|+++.|.|+|++.+.|+.+|.+++|+.
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t  480 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVV-DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDT  480 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeE-eehhhhhhheeEEeccCCceEEEEEeccEEEEEEc
Confidence             68999999999  667766544443 44444578999999999999999999999999974

>KOG0318|consensus

Probab=99.93  E-value=2.5e-24  Score=157.65  Aligned_cols=158  Identities=18%  Similarity=0.280  Sum_probs=131.8

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc---CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ---LDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      .+.|.-.|+++.|+|||+.||+.+.||++.+||=.+++.+..+.   +|.+.|.+++|+||++.+++++.|+++++||+.
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs  265 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS  265 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEee
Confidence            34567789999999999999999999999999999999999887   899999999999999999999999999999999


Q ss_pred             cCcceeEEeeCCC--CCeeEEEECCCCCEEEEe-cccEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeE
Q psy12456         81 KLKNFKTLQLDPN--YEIRDLCFDQSGTYMAVA-GTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        81 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      +.+.++++.....  .....+-|- .+.++.+. +..+..++.....++..+.+|.+.|+++..+|++++|.+|+.||.|
T Consensus       266 ~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I  344 (603)
T KOG0318|consen  266 TNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHI  344 (603)
T ss_pred             ccceEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceE
Confidence            8888888766443  112233343 44443332 2336666666667788899999999999999999999999999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      .-|++
T Consensus       345 ~~W~~  349 (603)
T KOG0318|consen  345 NSWDS  349 (603)
T ss_pred             EEEec
Confidence            99984

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=6.8e-24  Score=160.78  Aligned_cols=157  Identities=13%  Similarity=0.254  Sum_probs=126.9

Q ss_pred             CCCCcEEEEEeCCCC-cEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDG-LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g-~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .|...|.+++|+|++ ++|++|+.|++|+|||+++++.+..+..|...|.+++|+|++.+|++++.|++|++||+++.+.
T Consensus       123 gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~  202 (493)
T PTZ00421        123 GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI  202 (493)
T ss_pred             CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence            466789999999975 6999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecc------cEEEEEeCCce-EEEEeecC-cccEEEEEECCCCceEEEee-cCC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGT------DVRVFLCKQWQ-ELAMFNEH-TAMVTGVRFGTHAHYLASSS-MDR  155 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~i~~~~~~~-~~~~~~~h-~~~v~~~~~s~~~~~l~s~s-~D~  155 (162)
                      +..+..+.......+.|.+++..+++++.      .+++|+.+... ++.....+ ...+....|+++++++++++ .|+
T Consensus       203 v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg  282 (493)
T PTZ00421        203 VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG  282 (493)
T ss_pred             EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC
Confidence            77766654444556778888777666542      28888876543 33333333 34466667899999998887 599


Q ss_pred             eEEEeeC
Q psy12456        156 TLKLYSL  162 (162)
Q Consensus       156 ~i~iw~~  162 (162)
                      .|++||+
T Consensus       283 ~Iriwdl  289 (493)
T PTZ00421        283 NIRCFEL  289 (493)
T ss_pred             eEEEEEe
Confidence            9999985

>KOG0265|consensus

Probab=99.93  E-value=6.7e-25  Score=151.15  Aligned_cols=155  Identities=21%  Similarity=0.396  Sum_probs=138.8

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSEN-GYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      -|..+|..+.+.+|++.+.+.+.|.+++.||+++++.++.+++|...|.++.-+.- ..++.+++.|+++++||+|+...
T Consensus        88 gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~  167 (338)
T KOG0265|consen   88 GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA  167 (338)
T ss_pred             cccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch
Confidence            35678999999999999999999999999999999999999999999998885443 45778889999999999998776


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +++++  .++++++++|..++..+.+|+-|  +++|+.+..+....+.+|..+|+++..+|+|.++.+-+.|.++++||+
T Consensus       168 ~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~  245 (338)
T KOG0265|consen  168 IKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV  245 (338)
T ss_pred             hhccc--cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence            66653  45679999999999999999876  899999888888999999999999999999999999999999999985

>KOG0305|consensus

Probab=99.93  E-value=1.3e-24  Score=161.27  Aligned_cols=156  Identities=18%  Similarity=0.328  Sum_probs=138.1

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CCCEEEEEe--CCCeEEEEEccc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAA--DENCVKLWDLRK   81 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~--~d~~v~~wd~~~   81 (162)
                      ..|.+.|..++|++|+.++|+|+.|+.+.|||.....+...+..|.+.|.+++|+| ....||+|+  .|++|++||..+
T Consensus       298 ~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~  377 (484)
T KOG0305|consen  298 QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT  377 (484)
T ss_pred             hcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence            45888999999999999999999999999999988899999999999999999999 677899986  589999999987


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCEEEEecc----cEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeE
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT----DVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      .+.+...  .....|..+.|++..+-++++..    ++.||.+.+.+.+..+.+|...|..+++|||+..+++|+.|.++
T Consensus       378 g~~i~~v--dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETl  455 (484)
T KOG0305|consen  378 GARIDSV--DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETL  455 (484)
T ss_pred             CcEeccc--ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcE
Confidence            7766654  34456999999998866666543    38899998888899999999999999999999999999999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      ++|++
T Consensus       456 rfw~~  460 (484)
T KOG0305|consen  456 RFWNL  460 (484)
T ss_pred             Eeccc
Confidence            99985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=1.8e-23  Score=146.74  Aligned_cols=156  Identities=26%  Similarity=0.522  Sum_probs=137.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .|..+|+++.++|+++++++++.||.+++||+++++....+..|..++..+.|+|+++++++++.|+.+++||+.+.+..
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~   86 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV   86 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence            46788999999999999999999999999999988888888889889999999999999999999999999999876666


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+.. +...+.+++|+|++.++++++.+  +.+|+....+....+..|...+.++.|+|+++++++++.|+.+++||+
T Consensus        87 ~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~  164 (289)
T cd00200          87 RTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL  164 (289)
T ss_pred             EEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence            66554 34469999999999898888744  777777767778888889999999999999999998888999999985

>KOG0278|consensus

Probab=99.93  E-value=2.2e-24  Score=145.85  Aligned_cols=152  Identities=21%  Similarity=0.405  Sum_probs=128.4

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      +..+|..+-|....+.+.+...|++||+||.++++.++++... .+|+++.++++|.+|.++.. +.|++||..++..+.
T Consensus       142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf~~lK  219 (334)
T KOG0278|consen  142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAYG-SSVKFWDAKSFGLLK  219 (334)
T ss_pred             CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEecC-ceeEEecccccccee
Confidence            4456666777776777778899999999999999999998754 58999999999998776654 579999999888777


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEecccEE--EEEeCCceEEEEe-ecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTDVR--VFLCKQWQELAMF-NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .+...  ..|.+.+++|+..++++|+.|..  .|++.+.+++..+ ++|.++|.+++|+|+|...|+||.||+|++|.+
T Consensus       220 s~k~P--~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  220 SYKMP--CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             eccCc--cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence            76653  35889999999999999999954  4567788888886 899999999999999999999999999999963

>KOG0292|consensus

Probab=99.93  E-value=1.3e-24  Score=167.16  Aligned_cols=156  Identities=17%  Similarity=0.315  Sum_probs=140.8

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      -|..+|..++|||++.+|++|+.|-+|++|++++.+++.++.+|...|+.+.|++.-.+++++|.|.+|++|+..+.+++
T Consensus        49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i  128 (1202)
T KOG0292|consen   49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI  128 (1202)
T ss_pred             ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC--------c-------------------e-EE-EEeecCcc
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ--------W-------------------Q-EL-AMFNEHTA  134 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~--------~-------------------~-~~-~~~~~h~~  134 (162)
                      ..+..|.. -|.|..|+|....++++|-|  ++||++.-        .                   . .+ ..+++|..
T Consensus       129 avltGHnH-YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDR  207 (1202)
T KOG0292|consen  129 AVLTGHNH-YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDR  207 (1202)
T ss_pred             EEEecCce-EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccc
Confidence            88887655 49999999999999999988  89998621        0                   1 11 23678999


Q ss_pred             cEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        135 MVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       135 ~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .|+-++|.|.-..++||+.|+.|++|.+
T Consensus       208 GVNwaAfhpTlpliVSG~DDRqVKlWrm  235 (1202)
T KOG0292|consen  208 GVNWAAFHPTLPLIVSGADDRQVKLWRM  235 (1202)
T ss_pred             ccceEEecCCcceEEecCCcceeeEEEe
Confidence            9999999999999999999999999974

>KOG0277|consensus

Probab=99.93  E-value=9.8e-25  Score=147.56  Aligned_cols=156  Identities=24%  Similarity=0.376  Sum_probs=132.0

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      -|...|.++++++ .+..+++++-||+|++||...++.+++|.+|...|...+|+| ..+.++++|.|+++++||++..-
T Consensus       102 EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g  181 (311)
T KOG0277|consen  102 EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG  181 (311)
T ss_pred             hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC
Confidence            4566789999998 677888999999999999999999999999999999999999 68899999999999999998653


Q ss_pred             ceeEEeeCCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCc-eEEEEeecCcccEEEEEECCCC-ceEEEeecCCeEE
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQW-QELAMFNEHTAMVTGVRFGTHA-HYLASSSMDRTLK  158 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~  158 (162)
                      ....+.. |..++.++.|++- ...+++|+.|  +++|+.+.. .++.++.+|.-.|..++|||.. ..|||++.|-+++
T Consensus       182 k~~~i~a-h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r  260 (311)
T KOG0277|consen  182 KFMSIEA-HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR  260 (311)
T ss_pred             ceeEEEe-ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence            3333444 4467999999984 5677778777  788886553 5677889999999999999975 5889999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      |||.
T Consensus       261 iw~~  264 (311)
T KOG0277|consen  261 IWDP  264 (311)
T ss_pred             eccc
Confidence            9984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=1.5e-23  Score=147.14  Aligned_cols=154  Identities=25%  Similarity=0.464  Sum_probs=135.8

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      +...|+++.++|++.++++++.||.+++||+++++.+..+..|..++.+++|+|+++.+++++.|+.+++||++..+...
T Consensus       134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~  213 (289)
T cd00200         134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG  213 (289)
T ss_pred             CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence            55679999999999999998889999999999999888898888899999999999999999999999999998766655


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .+.. +...+.+++|+|++.++++++.+  +++|+....+....+..|...|.++.|+|+++++++++.|+.+++|+
T Consensus       214 ~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         214 TLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             chhh-cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            5543 34479999999999998888744  77888777778888889999999999999999999999999999996

>KOG0267|consensus

Probab=99.93  E-value=6.2e-26  Score=171.02  Aligned_cols=156  Identities=21%  Similarity=0.394  Sum_probs=145.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .|..+|-++.|+++..++++|+.+|+|++||+...+.++++.+|..++..++|+|.+.+.++|+.|.-+++||+++.-+.
T Consensus        68 ~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~  147 (825)
T KOG0267|consen   68 GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCS  147 (825)
T ss_pred             ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCce
Confidence            57789999999999999999999999999999999999999999999999999999999999999999999999977777


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+.. +...++.+.|+|+|.++++++.|  ++||+...++...+|+.|...+..+.|.|..-.+++||.|+++++||+
T Consensus       148 ~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dl  225 (825)
T KOG0267|consen  148 HTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDL  225 (825)
T ss_pred             eeecC-CcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecc
Confidence            77776 44468999999999999999986  889998888889999999999999999999999999999999999996

>KOG0295|consensus

Probab=99.93  E-value=8.8e-24  Score=148.82  Aligned_cols=156  Identities=21%  Similarity=0.438  Sum_probs=142.6

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccC---------------CCEEEEEe
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSEN---------------GYYLATAA   69 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~---------------~~~l~s~~   69 (162)
                      ..+.+-|-.++.+-||.++|+++.|.++++|-+.++++...+..|..+|.+++|.|.               ++++.+++
T Consensus       232 ~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S  311 (406)
T KOG0295|consen  232 PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS  311 (406)
T ss_pred             cCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec
Confidence            355668899999999999999999999999999999888889999999999999763               25899999


Q ss_pred             CCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCce
Q psy12456         70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHY  147 (162)
Q Consensus        70 ~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  147 (162)
                      .|++|++||+.+..++.++..| ...|+.++|+|.|+|++++..|  +++|+++..++.+.++.|...|+++.|..+..+
T Consensus       312 rDktIk~wdv~tg~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~  390 (406)
T KOG0295|consen  312 RDKTIKIWDVSTGMCLFTLVGH-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPY  390 (406)
T ss_pred             ccceEEEEeccCCeEEEEEecc-cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCce
Confidence            9999999999998888887764 5579999999999999999988  899999999999999999999999999988899


Q ss_pred             EEEeecCCeEEEee
Q psy12456        148 LASSSMDRTLKLYS  161 (162)
Q Consensus       148 l~s~s~D~~i~iw~  161 (162)
                      ++||+-|.++++|.
T Consensus       391 VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  391 VVTGSVDQTVKVWE  404 (406)
T ss_pred             EEeccccceeeeee
Confidence            99999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=2.9e-23  Score=166.23  Aligned_cols=152  Identities=26%  Similarity=0.372  Sum_probs=130.4

Q ss_pred             CCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          8 GPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         8 ~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      ...+.++.|+| ++.++|+++.||+|++||+.+++.+..+..|.+.|.+++|+| ++.+|++|+.|++|++||+++.+..
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence            45688999987 578999999999999999999999999999999999999997 7899999999999999999877766


Q ss_pred             eEEeeCCCCCeeEEEEC-CCCCEEEEeccc--EEEEEeCCce-EEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 KTLQLDPNYEIRDLCFD-QSGTYMAVAGTD--VRVFLCKQWQ-ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~--~~i~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..+..  ...+.++.|+ +++.++++|+.|  +++|+.+... .+..+.+|...|..+.|. ++.++++++.|++|++||
T Consensus       612 ~~~~~--~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        612 GTIKT--KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             EEEec--CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence            66553  2468889995 579999999988  6677765543 466778999999999997 678999999999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       689 ~  689 (793)
T PLN00181        689 L  689 (793)
T ss_pred             C
Confidence            5

>KOG0316|consensus

Probab=99.92  E-value=8.3e-24  Score=141.89  Aligned_cols=154  Identities=16%  Similarity=0.345  Sum_probs=124.0

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      ..+..+|.++.|+-||+|..+.+.|.+|++|++..+..++++.+|...|..++.+.|+..+++|+.|+.+.+||+.+.+.
T Consensus        14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv   93 (307)
T KOG0316|consen   14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKV   93 (307)
T ss_pred             cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCee
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC--ceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ--WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      .+++..| ...|+.+.|+.+...+++|+.|  +++|+|++  .++++.+.+-...|.++..+  +..+++||.||++|.|
T Consensus        94 ~Rr~rgH-~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRty  170 (307)
T KOG0316|consen   94 DRRFRGH-LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTY  170 (307)
T ss_pred             eeecccc-cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEE
Confidence            9988875 4579999999999999999988  88999864  34554444444444444332  2233344444444444


Q ss_pred             e
Q psy12456        161 S  161 (162)
Q Consensus       161 ~  161 (162)
                      |
T Consensus       171 d  171 (307)
T KOG0316|consen  171 D  171 (307)
T ss_pred             E
Confidence            3

>KOG0289|consensus

Probab=99.92  E-value=1.1e-23  Score=151.21  Aligned_cols=157  Identities=20%  Similarity=0.362  Sum_probs=140.8

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      -+.-.|+.+.+||+...+++++.|-.|+||.............|+++|+.+..+|.|.||++++.|++..+.|++.....
T Consensus       259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~l  338 (506)
T KOG0289|consen  259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQL  338 (506)
T ss_pred             CcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEE
Confidence            35567899999999999999999999999998877766777789999999999999999999999999999999987765


Q ss_pred             eEEeeC-CCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLD-PNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .....+ ....+++..|+|||..+++|..|  ++||+.+....+..|.+|+++|..++|+.+|.|+|+++.|+.|++|||
T Consensus       339 t~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL  418 (506)
T KOG0289|consen  339 TVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL  418 (506)
T ss_pred             EEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence            555442 33458999999999999999888  889999888889999999999999999999999999999999999996

>KOG0973|consensus

Probab=99.92  E-value=5.8e-24  Score=165.87  Aligned_cols=158  Identities=25%  Similarity=0.503  Sum_probs=136.6

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEee--CCCcEEEEECCC------------CeeeeeccCCCCCEEEEEEccCCCEEEEEe
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGT--SDSQVQIWDLKK------------QKNVTDFQLDAGPIQALSFSENGYYLATAA   69 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~--~dg~i~~wd~~~------------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~   69 (162)
                      .++++..|-++++||||..+|+|+  .||.++||+.+.            .+.++....|.++|.++.|+|||++||+|+
T Consensus         9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence            467788899999999999999999  899999998752            244566778999999999999999999999


Q ss_pred             CCCeEEEEEccc------------------CcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe
Q psy12456         70 DENCVKLWDLRK------------------LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF  129 (162)
Q Consensus        70 ~d~~v~~wd~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~  129 (162)
                      +|+.|.+|+...                  ++.+..+.. |...|.+++|+|++.++++++-|  +.||+.++++.++.+
T Consensus        89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl  167 (942)
T KOG0973|consen   89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL  167 (942)
T ss_pred             CcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence            999999999762                  112233443 56679999999999999999988  667777888889999


Q ss_pred             ecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       130 ~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .+|...|.++.|.|-|+|||+-+.|++|++|++
T Consensus       168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt  200 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRT  200 (942)
T ss_pred             ecccccccceEECCccCeeeeecCCceEEEEEc
Confidence            999999999999999999999999999999983

>KOG0282|consensus

Probab=99.92  E-value=1.2e-24  Score=157.63  Aligned_cols=156  Identities=22%  Similarity=0.404  Sum_probs=131.0

Q ss_pred             CCCCcEEEEEeCCCC-cEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDG-LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g-~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      ..+..++++.|+|++ ++|.+|+.|+.|+.||.|+++.++++..|.++|..|.|-+++.++++.+.|+.+++|+.+..-.
T Consensus       297 ~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~  376 (503)
T KOG0282|consen  297 HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP  376 (503)
T ss_pred             ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence            456788999999998 8999999999999999999999999999999999999999999999999999999999764211


Q ss_pred             e-----------eEEeeCC------------------------------------CCCeeEEEECCCCCEEEEecccE--
Q psy12456         85 F-----------KTLQLDP------------------------------------NYEIRDLCFDQSGTYMAVAGTDV--  115 (162)
Q Consensus        85 ~-----------~~~~~~~------------------------------------~~~v~~~~~~~~~~~~~~~~~~~--  115 (162)
                      +           .....++                                    ..--..+.|||+|.+|++|+.+.  
T Consensus       377 ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v  456 (503)
T KOG0282|consen  377 IKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKV  456 (503)
T ss_pred             chhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccE
Confidence            1           0000000                                    00134679999999999999984  


Q ss_pred             EEEEeCCceEEEEeecCcccEEEEEECCCC-ceEEEeecCCeEEEee
Q psy12456        116 RVFLCKQWQELAMFNEHTAMVTGVRFGTHA-HYLASSSMDRTLKLYS  161 (162)
Q Consensus       116 ~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iw~  161 (162)
                      .+|++++.+.+..+..|.+++..+.|.|.. ..+|++++||.|++|+
T Consensus       457 ~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  457 NFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             EEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            556677778888899999999999999864 6889999999999996

>KOG0319|consensus

Probab=99.92  E-value=4.8e-24  Score=161.04  Aligned_cols=158  Identities=22%  Similarity=0.371  Sum_probs=138.7

Q ss_pred             cCCCCCcEEEEEeCCCC-cEEEEeeCCCcEEEEECCCCee-----ee----eccCCCCCEEEEEEccCCCEEEEEeCCCe
Q psy12456          4 SGAGGPTLTTAQLHPDG-LIFGIGTSDSQVQIWDLKKQKN-----VT----DFQLDAGPIQALSFSENGYYLATAADENC   73 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g-~~~a~g~~dg~i~~wd~~~~~~-----~~----~~~~~~~~v~~i~~~~~~~~l~s~~~d~~   73 (162)
                      ...|...|++++++..+ ..|++++.|+++++|++...++     +.    +...|+..|++++++|+..+++|||.|++
T Consensus       407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt  486 (775)
T KOG0319|consen  407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT  486 (775)
T ss_pred             hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence            34677889999998644 4899999999999999987322     11    23468889999999999999999999999


Q ss_pred             EEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEe
Q psy12456         74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        74 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      .++|++........+..|.+ .+.|+.|+|..+.++++|.|  ++||...++.+++++++|...|..+.|-.++..|+|+
T Consensus       487 aKiW~le~~~l~~vLsGH~R-Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~  565 (775)
T KOG0319|consen  487 AKIWDLEQLRLLGVLSGHTR-GVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISA  565 (775)
T ss_pred             eeeecccCceEEEEeeCCcc-ceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEec
Confidence            99999997777777877655 69999999999999999998  8999999999999999999999999999999999999


Q ss_pred             ecCCeEEEeeC
Q psy12456        152 SMDRTLKLYSL  162 (162)
Q Consensus       152 s~D~~i~iw~~  162 (162)
                      +.||-|++|++
T Consensus       566 ~adGliKlWni  576 (775)
T KOG0319|consen  566 GADGLIKLWNI  576 (775)
T ss_pred             cCCCcEEEEec
Confidence            99999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=7.2e-23  Score=163.97  Aligned_cols=153  Identities=19%  Similarity=0.296  Sum_probs=129.9

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEc-cCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFS-ENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .|...|++++|+| ++.+|++|+.||+|++||+++++.+..+..+ ..+.+++|+ +++.++++|+.|+.|++||+++.+
T Consensus       573 ~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~  651 (793)
T PLN00181        573 EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK  651 (793)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            4677899999997 8899999999999999999999888888765 578899995 579999999999999999998654


Q ss_pred             -ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC------ceEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         84 -NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ------WQELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        84 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                       ....+.. +...|.++.|. ++.++++++.|  +++|+...      +..+..+.+|...+..+.|+|+++++++|+.|
T Consensus       652 ~~~~~~~~-h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D  729 (793)
T PLN00181        652 LPLCTMIG-HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET  729 (793)
T ss_pred             ccceEecC-CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence             2334433 45579999997 67788888877  77887653      35677889999999999999999999999999


Q ss_pred             CeEEEee
Q psy12456        155 RTLKLYS  161 (162)
Q Consensus       155 ~~i~iw~  161 (162)
                      +.|++|+
T Consensus       730 ~~v~iw~  736 (793)
T PLN00181        730 NEVFVYH  736 (793)
T ss_pred             CEEEEEE
Confidence            9999998

>KOG0264|consensus

Probab=99.92  E-value=8.1e-24  Score=152.13  Aligned_cols=156  Identities=24%  Similarity=0.448  Sum_probs=128.5

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECC--CCeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLK--KQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~--~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      -++..|..++||| ...+|++.+.|+.+.|||+|  +.++....++|.++|.+++|+| ++..||+||.|++|.+||+|+
T Consensus       225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn  304 (422)
T KOG0264|consen  225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN  304 (422)
T ss_pred             cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence            5677899999999 77799999999999999999  5667777889999999999999 678899999999999999998


Q ss_pred             Ccc-eeEEeeCCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCce--------------EEEEeecCcccEEEEEECC
Q psy12456         82 LKN-FKTLQLDPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQWQ--------------ELAMFNEHTAMVTGVRFGT  143 (162)
Q Consensus        82 ~~~-~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~~--------------~~~~~~~h~~~v~~~~~s~  143 (162)
                      ++. +..+.. +...|..+.|+|. ...+|+++.|  +.||++....              .+-...+|...|..+.|+|
T Consensus       305 L~~~lh~~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp  383 (422)
T KOG0264|consen  305 LNKPLHTFEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP  383 (422)
T ss_pred             cccCceeccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC
Confidence            764 445554 4557999999997 5667777777  6778764421              2234568999999999999


Q ss_pred             CCce-EEEeecCCeEEEeeC
Q psy12456        144 HAHY-LASSSMDRTLKLYSL  162 (162)
Q Consensus       144 ~~~~-l~s~s~D~~i~iw~~  162 (162)
                      +..+ ++|.+.|+.+.||++
T Consensus       384 ~ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  384 NEPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             CCCeEEEEecCCceEEEeec
Confidence            8765 478899999999974

>KOG0285|consensus

Probab=99.92  E-value=7.6e-24  Score=149.24  Aligned_cols=154  Identities=20%  Similarity=0.375  Sum_probs=138.2

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      |-.+|.+++.||.-..+++|+.|.++||||+|+...+..+.+|..+|..+.+.|-...+++|+-|++|++||++..+.+.
T Consensus       234 HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~  313 (460)
T KOG0285|consen  234 HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI  313 (460)
T ss_pred             ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence            45689999999999999999999999999999999999999999999999999988899999999999999999888776


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .... ++..+++++++|....+|+++.| ++-|.+..+..+..+.+|+.-|++++.+.|+ ++++|+..|.+.+||.
T Consensus       314 tlt~-hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  314 TLTH-HKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDW  388 (460)
T ss_pred             eeec-ccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEec
Confidence            6654 55579999999999999999987 7888887777777789999999999988766 6678999999999983

>KOG0269|consensus

Probab=99.92  E-value=1.3e-24  Score=164.87  Aligned_cols=151  Identities=21%  Similarity=0.361  Sum_probs=128.0

Q ss_pred             EEEEEeCC-CCcEEEEeeCCCcEEEEECCC---CeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCcce
Q psy12456         11 LTTAQLHP-DGLIFGIGTSDSQVQIWDLKK---QKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus        11 v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~---~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      ++.++|+- +.+++|+.+..|.|.+||+..   .+.+..|..|...+..+.|++ ..++|++|+.||+|++||+|..+..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            34566664 677999999999999999987   567788999999999999998 5789999999999999999987776


Q ss_pred             eEEeeCCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCc-eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 KTLQLDPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQW-QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .++... ...|+++.|+|. +.+++++...  ++.|+++.+ ....++..|.++|.++.|+|++.+|||||+|++|+||+
T Consensus       170 ~t~~~n-SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  170 STFRSN-SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD  248 (839)
T ss_pred             cccccc-chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence            666653 346999999995 6677777655  778888765 34667899999999999999999999999999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       249 ~  249 (839)
T KOG0269|consen  249 M  249 (839)
T ss_pred             c
Confidence            5

>KOG0296|consensus

Probab=99.92  E-value=9.2e-23  Score=143.73  Aligned_cols=158  Identities=16%  Similarity=0.207  Sum_probs=139.2

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      +..|..+|-+++.||+.+++|+|+.|..-.||+..+++....+.+|...|+++.|+-+|.+|++|+.+|.|++|+..+..
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~  139 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG  139 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence            34688899999999999999999999999999999999999999999999999999999999999999999999998755


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCc--eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW--QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..-.+- .....+.=++|+|.+..++.|+.|..+|-|+..  ...+.+.+|..++++=.|.|+|+.++++..|++|++|+
T Consensus       140 ~~~~~~-~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn  218 (399)
T KOG0296|consen  140 EQWKLD-QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN  218 (399)
T ss_pred             eEEEee-cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence            433332 123356678999999999999999888877543  46677899999999999999999999999999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      .
T Consensus       219 ~  219 (399)
T KOG0296|consen  219 P  219 (399)
T ss_pred             c
Confidence            4

>KOG0313|consensus

Probab=99.91  E-value=3.7e-23  Score=146.36  Aligned_cols=154  Identities=18%  Similarity=0.346  Sum_probs=130.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECC-------------------------CCeeeeeccCCCCCEEEEEEcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK-------------------------KQKNVTDFQLDAGPIQALSFSE   60 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~-------------------------~~~~~~~~~~~~~~v~~i~~~~   60 (162)
                      -|..+|.++...++|..+++|+.|..+.||+..                         ++.++-++.+|.++|.++.|++
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            366789999999999999999999999999932                         1235678889999999999988


Q ss_pred             CCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc---eEEEEeecCccc
Q psy12456         61 NGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW---QELAMFNEHTAM  135 (162)
Q Consensus        61 ~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~---~~~~~~~~h~~~  135 (162)
                       ...+.+++.|.+|+.||+.+.....+...  ...+.++.++|...++++|+.|  +++|+.+..   .....+.+|+..
T Consensus       271 -~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw  347 (423)
T KOG0313|consen  271 -ATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW  347 (423)
T ss_pred             -CCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence             66899999999999999988776655543  4468999999999999999998  777776543   245678999999


Q ss_pred             EEEEEECCCC-ceEEEeecCCeEEEeeC
Q psy12456        136 VTGVRFGTHA-HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       136 v~~~~~s~~~-~~l~s~s~D~~i~iw~~  162 (162)
                      |.+++|+|.. ..|++++.|+++++||+
T Consensus       348 Vssvkwsp~~~~~~~S~S~D~t~klWDv  375 (423)
T KOG0313|consen  348 VSSVKWSPTNEFQLVSGSYDNTVKLWDV  375 (423)
T ss_pred             hhheecCCCCceEEEEEecCCeEEEEEe
Confidence            9999999865 46799999999999995

>KOG0277|consensus

Probab=99.91  E-value=5.1e-24  Score=144.13  Aligned_cols=155  Identities=22%  Similarity=0.408  Sum_probs=129.9

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      -+..-|..++||| ..+++|+.+.||++++||++.....+.+..|...|.++.|+. +.+.|++|+.|+.|+.||+|+.+
T Consensus       145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r  224 (311)
T KOG0277|consen  145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR  224 (311)
T ss_pred             CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence            3667788999999 888999999999999999998655556999999999999998 67789999999999999999876


Q ss_pred             c-eeEEeeCCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCc-eEEEEeecCcccEEEEEECCC-CceEEEeecCCeE
Q psy12456         84 N-FKTLQLDPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQW-QELAMFNEHTAMVTGVRFGTH-AHYLASSSMDRTL  157 (162)
Q Consensus        84 ~-~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i  157 (162)
                      . +..+. .+...|+.+.|||. ...+++++.|  .+||+.... ..+.....|+..|.++.||+. ..++|++++|+.+
T Consensus       225 ~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l  303 (311)
T KOG0277|consen  225 TPLFELN-GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL  303 (311)
T ss_pred             ccceeec-CCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccce
Confidence            3 44443 45678999999996 5688999999  567765433 345667889999999999964 6789999999999


Q ss_pred             EEee
Q psy12456        158 KLYS  161 (162)
Q Consensus       158 ~iw~  161 (162)
                      ++|+
T Consensus       304 ~Vw~  307 (311)
T KOG0277|consen  304 YVWN  307 (311)
T ss_pred             eeec
Confidence            9997

>KOG0265|consensus

Probab=99.91  E-value=5.7e-23  Score=141.67  Aligned_cols=156  Identities=19%  Similarity=0.354  Sum_probs=131.0

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      ..++..|..+.|+|+|.+||+|+.|..|.+|++... +-...+++|.+.|..+.|.+|++.+++++.|++++.||.++.+
T Consensus        44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~  123 (338)
T KOG0265|consen   44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK  123 (338)
T ss_pred             CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccce
Confidence            357788999999999999999999999999996543 4456678999999999999999999999999999999999999


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCC-EEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ...+++.|.. -+..++-+.-|. ++.+++.|  +++|+.+..+.++.+.. +-.++++.|..++..+.+|+=|+.|++|
T Consensus       124 ~~rk~k~h~~-~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvW  201 (338)
T KOG0265|consen  124 RIRKHKGHTS-FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVW  201 (338)
T ss_pred             eeehhccccc-eeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccccCceeee
Confidence            8888887655 367666444454 45556655  88999888877777653 4469999999999999999999999999


Q ss_pred             eC
Q psy12456        161 SL  162 (162)
Q Consensus       161 ~~  162 (162)
                      |+
T Consensus       202 d~  203 (338)
T KOG0265|consen  202 DL  203 (338)
T ss_pred             cc
Confidence            85

>KOG0305|consensus

Probab=99.91  E-value=1.6e-23  Score=155.52  Aligned_cols=153  Identities=25%  Similarity=0.390  Sum_probs=133.2

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL-DAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      +..||++.|+++|.+||+|..+|.|.|||..+.+.++.+.. |...|.+++|+  +..+.+|+.|+.|..+|++..+...
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            67899999999999999999999999999999999999998 89999999997  6789999999999999999777554


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCC-ceEEEee--cCCeEEEee
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHA-HYLASSS--MDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s--~D~~i~iw~  161 (162)
                      ....+|..+|+.+.|++++.++|+|+.|  +.||+....++...+.+|...|.+++|+|.. ..||+|+  .|+.|++||
T Consensus       295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn  374 (484)
T KOG0305|consen  295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN  374 (484)
T ss_pred             hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence            4223356679999999999999999998  5566665667788899999999999999864 5778864  699999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      .
T Consensus       375 ~  375 (484)
T KOG0305|consen  375 T  375 (484)
T ss_pred             c
Confidence            4

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=5.9e-22  Score=151.56  Aligned_cols=156  Identities=14%  Similarity=0.183  Sum_probs=120.9

Q ss_pred             CCCCcEEEEEeCCCCcE-EEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGLI-FGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~-~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .|...|++++|||++.. +++++.|++|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||+++.+.
T Consensus       123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~  201 (568)
T PTZ00420        123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI  201 (568)
T ss_pred             cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE
Confidence            45678999999998875 5789999999999999998877776 457899999999999999999999999999998887


Q ss_pred             eeEEeeCCCCC----eeEEEECCCCCEEEEeccc------EEEEEeCC-ceEEEEe--ecCcccEEEEEECCCCceEEEe
Q psy12456         85 FKTLQLDPNYE----IRDLCFDQSGTYMAVAGTD------VRVFLCKQ-WQELAMF--NEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        85 ~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~------~~i~~~~~-~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      +..+..|....    +....|++++.++++++.+      +++|+.+. .+++..+  ..+...+......+++.++++|
T Consensus       202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG  281 (568)
T PTZ00420        202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG  281 (568)
T ss_pred             EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence            77776654321    2223456888888886644      78888774 3444443  3344444455456778999999


Q ss_pred             ecCCeEEEeeC
Q psy12456        152 SMDRTLKLYSL  162 (162)
Q Consensus       152 s~D~~i~iw~~  162 (162)
                      +.|++|++|++
T Consensus       282 kGD~tIr~~e~  292 (568)
T PTZ00420        282 KGDGNCRYYQH  292 (568)
T ss_pred             ECCCeEEEEEc
Confidence            99999999985

>KOG1446|consensus

Probab=99.91  E-value=8.3e-22  Score=136.58  Aligned_cols=157  Identities=22%  Similarity=0.340  Sum_probs=124.6

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      +.-|...|+.+..+|-+..+.+++.|++||+||+|..++.-.+.....+|  +||+|+|-++|++.....|++||+|...
T Consensus        96 F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~d  173 (311)
T KOG1446|consen   96 FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFD  173 (311)
T ss_pred             cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccC
Confidence            45678899999999999999999999999999999877766666554555  6999999999999988899999999763


Q ss_pred             --ceeEEeeC--CCCCeeEEEECCCCCEEEEecccE--EEEEeCCceEEEEeecCcccE---EEEEECCCCceEEEeecC
Q psy12456         84 --NFKTLQLD--PNYEIRDLCFDQSGTYMAVAGTDV--RVFLCKQWQELAMFNEHTAMV---TGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        84 --~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~h~~~v---~~~~~s~~~~~l~s~s~D  154 (162)
                        ....+...  ...+...+.|+|+|++++.+....  .+.+.-++.....+..+...-   ....|+||++++.+|+.|
T Consensus       174 kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~d  253 (311)
T KOG1446|consen  174 KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDD  253 (311)
T ss_pred             CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCC
Confidence              34444432  234688999999999999887764  454444556666666654322   556799999999999999


Q ss_pred             CeEEEeeC
Q psy12456        155 RTLKLYSL  162 (162)
Q Consensus       155 ~~i~iw~~  162 (162)
                      |+|.+|++
T Consensus       254 g~i~vw~~  261 (311)
T KOG1446|consen  254 GTIHVWNL  261 (311)
T ss_pred             CcEEEEEc
Confidence            99999985

>KOG0291|consensus

Probab=99.90  E-value=4e-22  Score=151.37  Aligned_cols=156  Identities=22%  Similarity=0.380  Sum_probs=141.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC-CeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE-NCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-~~v~~wd~~~~~~   84 (162)
                      +....|++++||+..+++|+|..+|...+|++..-..++.+...+.+|..++|+..|.+++.|+.. |.+-+|+.+....
T Consensus       263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY  342 (893)
T KOG0291|consen  263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY  342 (893)
T ss_pred             ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence            445789999999999999999999999999999999999998888899999999999999999865 7899999987666


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +.+.+.|. ..+.+++++|||+++++|+.|  ++||+..+.-++.+|.+|+..|+++.|+..++.+.++|.||+||.||+
T Consensus       343 VlKQQgH~-~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl  421 (893)
T KOG0291|consen  343 VLKQQGHS-DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL  421 (893)
T ss_pred             eeeccccc-cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence            66666644 469999999999999999998  677877777799999999999999999999999999999999999996

>KOG0294|consensus

Probab=99.90  E-value=2.7e-22  Score=139.27  Aligned_cols=157  Identities=24%  Similarity=0.393  Sum_probs=123.8

Q ss_pred             ccCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCC--EEEEEeCCCeEEEEEcc
Q psy12456          3 ASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY--YLATAADENCVKLWDLR   80 (162)
Q Consensus         3 ~~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~d~~v~~wd~~   80 (162)
                      ++.+|..+|++++++  |.++|+|+.|.+|+|||+++.+.+..+-.|.+.|+++.|.+.-.  .|++|+.||.|.+|+..
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~  115 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG  115 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence            467899999999997  79999999999999999999999988989999999999998654  89999999999999999


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEe--------------------------------------
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLC--------------------------------------  120 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~--------------------------------------  120 (162)
                      .+..+..++.|.. .|+.++.+|.+++-++.+.|  ++.|++                                      
T Consensus       116 ~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~  194 (362)
T KOG0294|consen  116 SWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIY  194 (362)
T ss_pred             CeEEeeeeccccc-ccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEE
Confidence            8887777766543 36666666666665555544  333321                                      


Q ss_pred             ------------------------------------------CCceEEEEeecCcccEEEEEE--CCCCceEEEeecCCe
Q psy12456        121 ------------------------------------------KQWQELAMFNEHTAMVTGVRF--GTHAHYLASSSMDRT  156 (162)
Q Consensus       121 ------------------------------------------~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~s~D~~  156 (162)
                                                                +...+...+.+|...|.++.+  .|++.+|+|+|.||.
T Consensus       195 q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~  274 (362)
T KOG0294|consen  195 QLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF  274 (362)
T ss_pred             ecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence                                                      001122345568888888874  578899999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      |++||+
T Consensus       275 I~vWd~  280 (362)
T KOG0294|consen  275 IKVWDI  280 (362)
T ss_pred             EEEEEc
Confidence            999985

>KOG0306|consensus

Probab=99.90  E-value=1.1e-22  Score=154.29  Aligned_cols=152  Identities=18%  Similarity=0.331  Sum_probs=136.7

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      .-|-|+.++|||+++|++--|.+++||-+++-+-.-++-+|.-||.+|.++||+++++|||.|+.|++|-+.=..+...+
T Consensus       509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~  588 (888)
T KOG0306|consen  509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF  588 (888)
T ss_pred             ccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh
Confidence            45789999999999999999999999999998887788899999999999999999999999999999998755555555


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      -.| ...|.++.|-|...++.+++.|  ++-|+-..++.++.+.+|...|++++-+|+|.+++|+|.|.+|++|.
T Consensus       589 fAH-dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  589 FAH-DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             hcc-cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            544 4569999999999999999998  55566577889999999999999999999999999999999999996

>KOG1407|consensus

Probab=99.90  E-value=3.5e-22  Score=135.70  Aligned_cols=153  Identities=18%  Similarity=0.413  Sum_probs=127.2

Q ss_pred             CCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          7 GGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         7 ~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      |+..|-.+.|+| ...+|++.+.|.+|++||.++++++.......+.+ -+.|+|+|.+++.++.|..|.+.|.++.+.+
T Consensus        63 h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~  141 (313)
T KOG1407|consen   63 HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIV  141 (313)
T ss_pred             CCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccccee
Confidence            344666677776 77799999999999999999999998887665555 5799999999999999999999999988776


Q ss_pred             eEEeeCCCCCeeEEEECCCCC-EEEEec-ccEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGT-YMAVAG-TDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...+.  ...+..++|+-++. ++++.+ .-+.|..+...+++..++.|...+.+++|+|+|++||+|+.|..+.+||+
T Consensus       142 ~~~~~--~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~  218 (313)
T KOG1407|consen  142 NEEQF--KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV  218 (313)
T ss_pred             ehhcc--cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccCh
Confidence            65543  34577788875554 444444 33778888888999999999999999999999999999999999999995

>KOG0641|consensus

Probab=99.90  E-value=1.4e-21  Score=131.01  Aligned_cols=157  Identities=24%  Similarity=0.439  Sum_probs=129.8

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-----eeeeccCCCCCEEEEEEccCC------------------
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-----NVTDFQLDAGPIQALSFSENG------------------   62 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-----~~~~~~~~~~~v~~i~~~~~~------------------   62 (162)
                      ++..+|.|.+|+|.|+++|+|+.|..|++.-++...     +-.+|..|++.|+.++|-.+.                  
T Consensus        87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy  166 (350)
T KOG0641|consen   87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY  166 (350)
T ss_pred             ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence            678899999999999999999999999997665432     234566788888888874321                  


Q ss_pred             ----------------------------CEEEEEeCCCeEEEEEcccCcceeEEeeC------CCCCeeEEEECCCCCEE
Q psy12456         63 ----------------------------YYLATAADENCVKLWDLRKLKNFKTLQLD------PNYEIRDLCFDQSGTYM  108 (162)
Q Consensus        63 ----------------------------~~l~s~~~d~~v~~wd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~  108 (162)
                                                  -++++|+.|.+|++||+|-..+++.+.-.      ....|..++..|.|+++
T Consensus       167 ~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll  246 (350)
T KOG0641|consen  167 ITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLL  246 (350)
T ss_pred             EeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCccee
Confidence                                        25889999999999999876666554211      12358899999999999


Q ss_pred             EEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        109 AVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       109 ~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++|..|  ..+|+.+....++.|..|+..|.++.|||...++.+++.|..|++=|+
T Consensus       247 ~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdl  302 (350)
T KOG0641|consen  247 ASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDL  302 (350)
T ss_pred             eeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeec
Confidence            999877  788998888899999999999999999999999999999999998764

>KOG0306|consensus

Probab=99.90  E-value=4.3e-22  Score=151.09  Aligned_cols=152  Identities=20%  Similarity=0.388  Sum_probs=130.4

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc-----e
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN-----F   85 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~-----~   85 (162)
                      +-+..|-|.++++++|..+|.+.+||+.+...+.+.++|++.|.+++.+||+..+++|+.|++|++||..-...     .
T Consensus       415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~  494 (888)
T KOG0306|consen  415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK  494 (888)
T ss_pred             EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence            45677889999999999999999999999888889999999999999999999999999999999999742111     0


Q ss_pred             eEEe------eCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeE
Q psy12456         86 KTLQ------LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        86 ~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      ..+.      .+-...+.|+.+||+|++++++--|  ++||..++.+-.-.+-+|+=||.++..|||++.++|||.|++|
T Consensus       495 k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnV  574 (888)
T KOG0306|consen  495 KVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNV  574 (888)
T ss_pred             eeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCce
Confidence            0011      1223468999999999999999766  8889888888888889999999999999999999999999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      +||-+
T Consensus       575 KiWGL  579 (888)
T KOG0306|consen  575 KIWGL  579 (888)
T ss_pred             EEecc
Confidence            99954

>KOG0281|consensus

Probab=99.90  E-value=3.1e-23  Score=145.96  Aligned_cols=149  Identities=20%  Similarity=0.377  Sum_probs=96.7

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccC-------------------------
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSEN-------------------------   61 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~-------------------------   61 (162)
                      |..+|-|+++.  .+++++|++|.+|++||+++++++.++-.|-..|..+.|+..                         
T Consensus       236 HtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~r  313 (499)
T KOG0281|consen  236 HTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLR  313 (499)
T ss_pred             CCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHH
Confidence            45677888776  459999999999999999999888777666666665555421                         


Q ss_pred             ----------------CCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc
Q psy12456         62 ----------------GYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW  123 (162)
Q Consensus        62 ----------------~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~  123 (162)
                                      .+++++++.|.++++|+..+.+.+..+..|.. .|.|+.+  .++++++|+.|  +++|+...+
T Consensus       314 rVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkR-GIAClQY--r~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  314 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-GIACLQY--RDRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             HHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccc-cceehhc--cCeEEEecCCCceEEEEecccc
Confidence                            23555555555555555555555555444333 2444443  35666666666  566666666


Q ss_pred             eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       124 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..++.+++|..-|.++.|  +.+.+++|+.||+|++||+
T Consensus       391 ~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl  427 (499)
T KOG0281|consen  391 ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL  427 (499)
T ss_pred             HHHHHHhchHHhhhheee--cCceeeeccccceEEEEec
Confidence            666666677777777776  3556667777777777764

>KOG0310|consensus

Probab=99.90  E-value=3.3e-22  Score=145.13  Aligned_cols=151  Identities=19%  Similarity=0.333  Sum_probs=125.8

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      ..+.++.|-.||+++|+|...|.|+|||+++...++.+.+|..|+..+.|+| +++.+++|+.|+.+++||+.+......
T Consensus        69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~  148 (487)
T KOG0310|consen   69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE  148 (487)
T ss_pred             cceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence            3578899999999999999999999999877677888999999999999999 567888999999999999987553224


Q ss_pred             EeeCCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCc-eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         88 LQLDPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQW-QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...|.+ .|+|.+++|. +..+++|+.|  +++|+.+.. ..+.+++ |..+|..+.|-|.|+.+|+++. ..+++||+
T Consensus       149 l~~htD-YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl  224 (487)
T KOG0310|consen  149 LSGHTD-YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDL  224 (487)
T ss_pred             ecCCcc-eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEe
Confidence            444444 5999999985 6789999999  777877665 4555554 8889999999999999999874 46999996

>KOG0269|consensus

Probab=99.89  E-value=9.8e-23  Score=154.79  Aligned_cols=156  Identities=23%  Similarity=0.400  Sum_probs=127.1

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      -|.-.+++++||+ .-+++++|+.||+|++||+|..+...++......|+.++|+| ++.+++++...|.+.+||+|...
T Consensus       131 EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~  210 (839)
T KOG0269|consen  131 EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD  210 (839)
T ss_pred             hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch
Confidence            4566899999998 667999999999999999999999888888778999999999 68899999999999999998654


Q ss_pred             c-eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEee-cCcccEEEEEECCCCc-eEEEee--cCCe
Q psy12456         84 N-FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFN-EHTAMVTGVRFGTHAH-YLASSS--MDRT  156 (162)
Q Consensus        84 ~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~-~l~s~s--~D~~  156 (162)
                      . +..+.. |..++.|+.|+|++.+||+|+.|  ++||++.......... ....+|..++|-|..+ .||+++  .|-.
T Consensus       211 r~~~k~~A-H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts  289 (839)
T KOG0269|consen  211 RCEKKLTA-HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS  289 (839)
T ss_pred             hHHHHhhc-ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccce
Confidence            3 344444 56689999999999999999998  7788876543322222 2346799999998755 567765  4889


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      |++||+
T Consensus       290 V~VWDv  295 (839)
T KOG0269|consen  290 VHVWDV  295 (839)
T ss_pred             EEEEee
Confidence            999996

>KOG0316|consensus

Probab=99.89  E-value=2.6e-22  Score=134.79  Aligned_cols=157  Identities=21%  Similarity=0.327  Sum_probs=127.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc--
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK--   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~--   83 (162)
                      -+|..|-.++.+.|..-||+++.|..+.+||+.+|+.++.|.+|.+.|..++|+.+...+++|+.|.++++||-|...  
T Consensus        57 ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e  136 (307)
T KOG0316|consen   57 GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE  136 (307)
T ss_pred             CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence            456678888899999999999999999999999999999999999999999999999999999999999999976432  


Q ss_pred             ceeEE-----------------------------ee--------CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCce
Q psy12456         84 NFKTL-----------------------------QL--------DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ  124 (162)
Q Consensus        84 ~~~~~-----------------------------~~--------~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~  124 (162)
                      +++.+                             ..        ....+|++++|++++...+.++-+  +++.+-.+++
T Consensus       137 PiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk  216 (307)
T KOG0316|consen  137 PIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK  216 (307)
T ss_pred             ccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhH
Confidence            22110                             00        012368999999999988888776  6666666778


Q ss_pred             EEEEeecCcccEEE--EEECCCCceEEEeecCCeEEEeeC
Q psy12456        125 ELAMFNEHTAMVTG--VRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       125 ~~~~~~~h~~~v~~--~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .++.+.+|+..-..  ..++....++++||.||.|.+|||
T Consensus       217 lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL  256 (307)
T KOG0316|consen  217 LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL  256 (307)
T ss_pred             HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence            88889999875433  445555678999999999999996

>KOG4283|consensus

Probab=99.89  E-value=7.9e-22  Score=136.24  Aligned_cols=156  Identities=15%  Similarity=0.265  Sum_probs=125.7

Q ss_pred             CCCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCe----------eeeec-----cCCCCCEEEEEEcc-CCCEEEE
Q psy12456          5 GAGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQK----------NVTDF-----QLDAGPIQALSFSE-NGYYLAT   67 (162)
Q Consensus         5 ~~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~----------~~~~~-----~~~~~~v~~i~~~~-~~~~l~s   67 (162)
                      ..|+.+|+++++.+ .|+|+++|+.||.|-+||++...          ..+..     .+|.-.|.++.|-| |..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            36789999999998 99999999999999999997532          11111     24566799999999 7778999


Q ss_pred             EeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCC---CCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEEC
Q psy12456         68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQS---GTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFG  142 (162)
Q Consensus        68 ~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s  142 (162)
                      ++.|.++++||..+.+....++.+.  .|-+=+++|-   -+++|+|..+  +++++...+..-..+.+|.+.|.++.|+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence            9999999999999888777776543  3555566663   3566666665  6777778888888899999999999999


Q ss_pred             CCCceE-EEeecCCeEEEeeC
Q psy12456        143 THAHYL-ASSSMDRTLKLYSL  162 (162)
Q Consensus       143 ~~~~~l-~s~s~D~~i~iw~~  162 (162)
                      |...++ ++|+.|+.||+||+
T Consensus       198 p~~e~vLatgsaDg~irlWDi  218 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDI  218 (397)
T ss_pred             cCceeEEEecCCCceEEEEEe
Confidence            988765 89999999999996

>KOG0639|consensus

Probab=99.89  E-value=2.7e-23  Score=151.99  Aligned_cols=153  Identities=23%  Similarity=0.377  Sum_probs=133.6

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      ..+.+.+++.+||.++..+.+.||.|.|||++.+..++.|++|...+.+|.+++||..|.+|+.|.+|+.||+|..+.++
T Consensus       508 sapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq  587 (705)
T KOG0639|consen  508 SAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ  587 (705)
T ss_pred             cchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh
Confidence            34677889999999999999999999999999999999999999999999999999999999999999999999766555


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCc-eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW-QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ...+  ...|.++.++|++.++++|-.+..++..... .....+.-|...|.+++|.+.|+|+++.+.|..+..|.
T Consensus       588 qhdF--~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawr  661 (705)
T KOG0639|consen  588 QHDF--SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  661 (705)
T ss_pred             hhhh--hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhcc
Confidence            4333  3458999999999999999888777765443 33445677999999999999999999999999988886

>KOG1273|consensus

Probab=99.89  E-value=1.6e-21  Score=135.76  Aligned_cols=152  Identities=22%  Similarity=0.411  Sum_probs=124.6

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEee
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      .+++.|++-|.++|+|+.||.|.|||+.+...-+.+.+|-.||.+++||++|+.|+++|.|..+++||+.+...++.+.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            68899999999999999999999999999988889999999999999999999999999999999999987665443332


Q ss_pred             C---------CCC------------------------------------CeeEEEECCCCCEEEEeccc--EEEEEeCCc
Q psy12456         91 D---------PNY------------------------------------EIRDLCFDQSGTYMAVAGTD--VRVFLCKQW  123 (162)
Q Consensus        91 ~---------~~~------------------------------------~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~  123 (162)
                      .         +..                                    ...+..|.+.|+++.+|...  +.+++..+.
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence            1         100                                    01122477788898888776  445556667


Q ss_pred             eEEEEeecCc-ccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        124 QELAMFNEHT-AMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       124 ~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +.+..++-.+ ..|..+.|+..+++|+.-+.|+.||.|++
T Consensus       186 e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  186 ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI  225 (405)
T ss_pred             eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence            7777776555 77899999999999999999999999974

>KOG0772|consensus

Probab=99.89  E-value=2.7e-22  Score=146.94  Aligned_cols=155  Identities=23%  Similarity=0.360  Sum_probs=122.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe--eee-eccCCCC--CEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--NVT-DFQLDAG--PIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~--~~~-~~~~~~~--~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      -..-++++++|+|||+++|+|+.||.|.+|+.++..  +.. .-++|..  .|++|+||+||++|++-+.|.++++||++
T Consensus       315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            345567999999999999999999999999986532  222 2346765  89999999999999999999999999999


Q ss_pred             cCcc-eeEEe-eCCCCCeeEEEECCCCCEEEEeccc--------EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEE
Q psy12456         81 KLKN-FKTLQ-LDPNYEIRDLCFDQSGTYMAVAGTD--------VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus        81 ~~~~-~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  150 (162)
                      .++. +.... +...++-+.+||||+.+++++|..-        +.+|+..+.+.+..+.-....|..+.|+|.=+.+..
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~  474 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA  474 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheee
Confidence            7653 22221 2234566889999999999998642        345555667788887777888999999998777777


Q ss_pred             eecCCeEEEe
Q psy12456        151 SSMDRTLKLY  160 (162)
Q Consensus       151 ~s~D~~i~iw  160 (162)
                      ++.||++++|
T Consensus       475 gsgdG~~~vy  484 (641)
T KOG0772|consen  475 GSGDGTAHVY  484 (641)
T ss_pred             ecCCCceEEE
Confidence            8889999986

>KOG0274|consensus

Probab=99.89  E-value=5.3e-21  Score=145.79  Aligned_cols=151  Identities=19%  Similarity=0.295  Sum_probs=134.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      -|...|.++++..-+.++++|+.|.++++||..++++...+.+|...|.++...  ..++++|+.|.+|++|++.+...+
T Consensus       247 GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l  324 (537)
T KOG0274|consen  247 GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACL  324 (537)
T ss_pred             CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceE
Confidence            466789999999878899999999999999999999999999999999887774  557888999999999999988888


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+.. +..+|+++.++  +.++++|+.|  +++|+..+.+.++.+.+|...|.++.+.+. ..+.+|+.|++|++||+
T Consensus       325 ~l~~~-h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl  399 (537)
T KOG0274|consen  325 NLLRG-HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL  399 (537)
T ss_pred             EEecc-ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecC
Confidence            87776 56689999887  7788898888  789998999999999999999999988654 88999999999999996

>KOG0293|consensus

Probab=99.88  E-value=5.9e-22  Score=141.90  Aligned_cols=155  Identities=21%  Similarity=0.386  Sum_probs=127.9

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      |...+.|.+++.++||+++.+.+.|..+++++..+........ ...+|++.++|.+++++++.-.+..+.+||+...+.
T Consensus       351 gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l  429 (519)
T KOG0293|consen  351 GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL  429 (519)
T ss_pred             ccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH
Confidence            3556779999999999999999999999999987655544444 346999999999999999999999999999987777


Q ss_pred             eeEEeeCCC--CCeeEEEEC-CCCCEEEEecccEE--EEEeCCceEEEEeecCcccEEEEEECCC-CceEEEeecCCeEE
Q psy12456         85 FKTLQLDPN--YEIRDLCFD-QSGTYMAVAGTDVR--VFLCKQWQELAMFNEHTAMVTGVRFGTH-AHYLASSSMDRTLK  158 (162)
Q Consensus        85 ~~~~~~~~~--~~v~~~~~~-~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~  158 (162)
                      ++++..+..  +.|++ ||. .+..++++|+.|.+  ||...+.+.+..+.+|...|++++|+|. ..++||||.||+||
T Consensus       430 v~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIR  508 (519)
T KOG0293|consen  430 VRKYFGHKQGHFIIRS-CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIR  508 (519)
T ss_pred             HHHhhcccccceEEEe-ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEE
Confidence            766655432  34555 454 56799999999954  5555677899999999999999999985 46889999999999


Q ss_pred             Eee
Q psy12456        159 LYS  161 (162)
Q Consensus       159 iw~  161 (162)
                      ||.
T Consensus       509 IWg  511 (519)
T KOG0293|consen  509 IWG  511 (519)
T ss_pred             Eec
Confidence            995

>KOG0643|consensus

Probab=99.88  E-value=8.6e-22  Score=134.23  Aligned_cols=154  Identities=20%  Similarity=0.276  Sum_probs=129.3

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      ++...++.+.|.|-++.+++|..||.|..||.+++ +.+..-+.|...|+.|+++||..++++++.|.+-++||.++.+.
T Consensus       145 t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v  224 (327)
T KOG0643|consen  145 TPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV  224 (327)
T ss_pred             CCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceee
Confidence            55688999999999999999999999999999997 55666678989999999999999999999999999999999887


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecc-cE-EEEEe--CC------------ceEEEEeecCcccEEEEEECCCCceE
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGT-DV-RVFLC--KQ------------WQELAMFNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~-~i~~~--~~------------~~~~~~~~~h~~~v~~~~~s~~~~~l  148 (162)
                      +.++.-  ..++++.+++|....++.|+. +- .|-..  +.            -+++..+++|-++|++++|+|+|+..
T Consensus       225 ~Kty~t--e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksY  302 (327)
T KOG0643|consen  225 LKTYTT--ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSY  302 (327)
T ss_pred             EEEeee--cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCccc
Confidence            777653  457999999997766666554 42 22211  11            14567789999999999999999999


Q ss_pred             EEeecCCeEEEee
Q psy12456        149 ASSSMDRTLKLYS  161 (162)
Q Consensus       149 ~s~s~D~~i~iw~  161 (162)
                      +||+.||.||+.-
T Consensus       303 sSGGEDG~VR~h~  315 (327)
T KOG0643|consen  303 SSGGEDGYVRLHH  315 (327)
T ss_pred             ccCCCCceEEEEE
Confidence            9999999999863

>KOG2096|consensus

Probab=99.88  E-value=4.4e-21  Score=133.75  Aligned_cols=155  Identities=18%  Similarity=0.370  Sum_probs=116.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe------------------------------------eeeecc--
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK------------------------------------NVTDFQ--   47 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~------------------------------------~~~~~~--   47 (162)
                      -|+..||+++|+.||++||+.+.|+.|+||+++.-.                                    .++.|+  
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~  163 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV  163 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence            467889999999999999999999999999987310                                    011110  


Q ss_pred             ---------------------CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC
Q psy12456         48 ---------------------LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT  106 (162)
Q Consensus        48 ---------------------~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  106 (162)
                                           -|..++..+-....+.++.+++.|..|.+|+++ .+.++...-. .......+.+|+|+
T Consensus       164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~aavSP~GR  241 (420)
T KOG2096|consen  164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDAAVSPDGR  241 (420)
T ss_pred             ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-cccccceeeCCCCc
Confidence                                 012234445555566789999999999999998 4544444322 22356778999999


Q ss_pred             EEEEecc--cEEEEEe---CC--c---eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        107 YMAVAGT--DVRVFLC---KQ--W---QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       107 ~~~~~~~--~~~i~~~---~~--~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++++++.  |+++|..   +.  +   ..+.++.+|+..|..++|||++...+|.|.||++|+||.
T Consensus       242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdt  307 (420)
T KOG2096|consen  242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDT  307 (420)
T ss_pred             EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeec
Confidence            9999875  5888863   11  2   234567899999999999999999999999999999984

>KOG0973|consensus

Probab=99.88  E-value=1.7e-21  Score=152.30  Aligned_cols=156  Identities=19%  Similarity=0.295  Sum_probs=133.3

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .|..-|..+.|+|++.++|+++.|++|.|||.++.+.+..+.+|.+.|..+.|+|-|+|+++-+.|++|++|+..++...
T Consensus       127 ~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~  206 (942)
T KOG0973|consen  127 GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE  206 (942)
T ss_pred             cCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee
Confidence            36778899999999999999999999999999999999999999999999999999999999999999999998776554


Q ss_pred             eEEeeCC-----CCCeeEEEECCCCCEEEEeccc------EEEEEeCCceEEEEeecCcccEEEEEECCC-----Cc---
Q psy12456         86 KTLQLDP-----NYEIRDLCFDQSGTYMAVAGTD------VRVFLCKQWQELAMFNEHTAMVTGVRFGTH-----AH---  146 (162)
Q Consensus        86 ~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~-----~~---  146 (162)
                      .......     ..-++.+.|+|+|++|++...-      +.|..-..|+.-..+-+|.+++..++|+|.     .+   
T Consensus       207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~  286 (942)
T KOG0973|consen  207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT  286 (942)
T ss_pred             EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence            4432211     1237889999999999997532      567777788888889999999999999982     11   


Q ss_pred             ---------eEEEeecCCeEEEee
Q psy12456        147 ---------YLASSSMDRTLKLYS  161 (162)
Q Consensus       147 ---------~l~s~s~D~~i~iw~  161 (162)
                               .+|+||.|++|.+|.
T Consensus       287 ~~~~~~~y~i~AvgSqDrSlSVW~  310 (942)
T KOG0973|consen  287 STQPNCYYCIAAVGSQDRSLSVWN  310 (942)
T ss_pred             ccCCCcceEEEEEecCCccEEEEe
Confidence                     578899999999997

>KOG0640|consensus

Probab=99.88  E-value=4.8e-22  Score=138.21  Aligned_cols=156  Identities=21%  Similarity=0.412  Sum_probs=128.3

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc--CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ--LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      |-..|++++|||...+|++|+.|++|++||+.+....+-++  ....+|++++|+|.|.+|+.|..-.++++||+.+.++
T Consensus       171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc  250 (430)
T KOG0640|consen  171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC  250 (430)
T ss_pred             ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE
Confidence            45678999999999999999999999999998754433333  2457999999999999999999989999999998876


Q ss_pred             eeEEee--CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEee-cCc-ccEEEEEECCCCceEEEeecCCeEE
Q psy12456         85 FKTLQL--DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFN-EHT-AMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        85 ~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~-~h~-~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      ...-..  .+...|+++.+++.+.+-++++.|  +++|+--+..++..+. .|. ..|.+..|..+++++.+.+.|..++
T Consensus       251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk  330 (430)
T KOG0640|consen  251 FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK  330 (430)
T ss_pred             eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence            544322  234579999999999999999988  6777655555666553 454 4689999999999999999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      +|.+
T Consensus       331 LWEi  334 (430)
T KOG0640|consen  331 LWEI  334 (430)
T ss_pred             eeee
Confidence            9985

>KOG0308|consensus

Probab=99.88  E-value=3.4e-22  Score=149.54  Aligned_cols=159  Identities=21%  Similarity=0.350  Sum_probs=137.8

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC--eeeeeccCCCCCEEEEEE-ccCCCEEEEEeCCCeEEEEEcc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ--KNVTDFQLDAGPIQALSF-SENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~i~~-~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      .++|...|+.+....+|+.|++++.|-+|++|+...+  -+..++..|...|.+++. .++...+++|+.|+.|.+||+.
T Consensus        69 me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin  148 (735)
T KOG0308|consen   69 MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN  148 (735)
T ss_pred             hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence            4567778888999999999999999999999999887  456778889999999999 7888999999999999999998


Q ss_pred             cCcc--e--------eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceE
Q psy12456         81 KLKN--F--------KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        81 ~~~~--~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  148 (162)
                      +...  +        ......+..++-+++.++.|..+++|+.+  +++|++++.+.+..+.+|...|..+..++||..+
T Consensus       149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~  228 (735)
T KOG0308|consen  149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRL  228 (735)
T ss_pred             CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeE
Confidence            5421  1        11222345568899999999999999876  8999999999999999999999999999999999


Q ss_pred             EEeecCCeEEEeeC
Q psy12456        149 ASSSMDRTLKLYSL  162 (162)
Q Consensus       149 ~s~s~D~~i~iw~~  162 (162)
                      +|+|.|++|++|||
T Consensus       229 ls~sSDgtIrlWdL  242 (735)
T KOG0308|consen  229 LSASSDGTIRLWDL  242 (735)
T ss_pred             eecCCCceEEeeec
Confidence            99999999999996

>KOG0302|consensus

Probab=99.88  E-value=1.6e-21  Score=138.23  Aligned_cols=149  Identities=18%  Similarity=0.352  Sum_probs=122.6

Q ss_pred             EEEEeCC-CCcEEEEeeCCCcEEEEECCCCeee---eeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCcc--
Q psy12456         12 TTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNV---TDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLKN--   84 (162)
Q Consensus        12 ~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~~--   84 (162)
                      .+++|+| ..-.+++|..-+.|++|...++.-.   ..|.+|...|..++||| ....|++||.|++|++||+|....  
T Consensus       215 y~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~  294 (440)
T KOG0302|consen  215 YGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA  294 (440)
T ss_pred             eeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc
Confidence            5688999 3335778999999999999887532   34667999999999999 567999999999999999997632  


Q ss_pred             -eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC---ceEEEEeecCcccEEEEEECCC-CceEEEeecCCeE
Q psy12456         85 -FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ---WQELAMFNEHTAMVTGVRFGTH-AHYLASSSMDRTL  157 (162)
Q Consensus        85 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~---~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i  157 (162)
                       +.. +. +...|+-++|+..-.+||+|+.|  .+||+++.   .+++..|+.|+.+|+++.|+|. ...|++++.|..|
T Consensus       295 ~~~~-kA-h~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi  372 (440)
T KOG0302|consen  295 AVST-KA-HNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI  372 (440)
T ss_pred             eeEe-ec-cCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence             222 33 44579999999998899999887  78898765   4678999999999999999986 4577888999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      .+|||
T Consensus       373 tiWDl  377 (440)
T KOG0302|consen  373 TIWDL  377 (440)
T ss_pred             EEEEe
Confidence            99996

>KOG0646|consensus

Probab=99.88  E-value=1.2e-20  Score=136.62  Aligned_cols=156  Identities=20%  Similarity=0.294  Sum_probs=133.4

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECC---------CCeeeeeccCCCCCEEEEEEccC--CCEEEEEeCCCe
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK---------KQKNVTDFQLDAGPIQALSFSEN--GYYLATAADENC   73 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~---------~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~d~~   73 (162)
                      .+|.++||++.|+.||.+|.+|+.||.|.+|++.         +-++++.|..|.-+|+.+...+.  ..+|+++|.|.+
T Consensus       120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t  199 (476)
T KOG0646|consen  120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT  199 (476)
T ss_pred             HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce
Confidence            4789999999999999999999999999999874         34688899999999999988764  568999999999


Q ss_pred             EEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCC------------------ceEEEEeecCcc-
Q psy12456         74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ------------------WQELAMFNEHTA-  134 (162)
Q Consensus        74 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~------------------~~~~~~~~~h~~-  134 (162)
                      +++||+.....+.+...  ...+.+++++|.++.+.+|+.+.+||...-                  ...+..+.+|.. 
T Consensus       200 ~k~wdlS~g~LLlti~f--p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~  277 (476)
T KOG0646|consen  200 IKLWDLSLGVLLLTITF--PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE  277 (476)
T ss_pred             EEEEEeccceeeEEEec--CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC
Confidence            99999987776666544  446999999999999999999977775311                  124556778888 


Q ss_pred             -cEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        135 -MVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       135 -~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                       .|++++.+-|+..|++|+.||++.+||+
T Consensus       278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  278 SAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence             9999999999999999999999999995

>KOG0293|consensus

Probab=99.87  E-value=6.6e-21  Score=136.57  Aligned_cols=157  Identities=13%  Similarity=0.221  Sum_probs=130.0

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe---eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK---NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      .+...|--+.|+++|+|+|+++.|.+..+|++-...   ...++.+|..+|..+.||||.++|++|+.|..+++||..+.
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG  301 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence            466678889999999999999999999999886654   46788899999999999999999999999999999999988


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCc-eEEEEeecC-cccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW-QELAMFNEH-TAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      .....+.......+.+++|.|||.-+++|+.|..++-|... .....+++- ...|.+++.++||+++.+.+.|..|+++
T Consensus       302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~  381 (519)
T KOG0293|consen  302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLY  381 (519)
T ss_pred             hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeee
Confidence            87776655455678999999999999999999655544322 222223322 2459999999999999999999999998


Q ss_pred             eC
Q psy12456        161 SL  162 (162)
Q Consensus       161 ~~  162 (162)
                      +.
T Consensus       382 ~~  383 (519)
T KOG0293|consen  382 NR  383 (519)
T ss_pred             ch
Confidence            73

>KOG0268|consensus

Probab=99.87  E-value=7.8e-22  Score=139.22  Aligned_cols=155  Identities=17%  Similarity=0.373  Sum_probs=123.2

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      -+-..|.++.|+| ...+|+++.+|+.|.|||+++++++...... -.-..|+|+|+.-.+++|+.|..+..||++..+.
T Consensus       185 wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~  263 (433)
T KOG0268|consen  185 WGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR  263 (433)
T ss_pred             cCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-ccccceecCccccceeeccccccceehhhhhhcc
Confidence            4567789999999 6778999999999999999999988776532 2345789999998999999999999999998764


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe-ecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF-NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .......+...+.++.|+|.|+-+++||.|  ++||..+.......+ ..--..|.+++||.|.+++++||.|+.|++|.
T Consensus       264 p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  264 PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            333333456679999999999999999999  677665543222111 11123589999999999999999999999995

>KOG0643|consensus

Probab=99.87  E-value=8.9e-20  Score=124.50  Aligned_cols=157  Identities=17%  Similarity=0.279  Sum_probs=136.2

Q ss_pred             ccCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456          3 ASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         3 ~~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      ..| |.-++|.+.++.+|.+|.+.+.|.+..||=.-.|+.+-++++|.+.|.++..+.+..++++|+.|.++++||..+.
T Consensus         6 l~G-HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    6 LQG-HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccc-CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            344 4558999999999999999999999999987789999999999999999999999999999999999999999998


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCCEEEEeccc-------EEEEEeC-------CceEEEEeecCcccEEEEEECCCCceE
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-------VRVFLCK-------QWQELAMFNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~i~~~~-------~~~~~~~~~~h~~~v~~~~~s~~~~~l  148 (162)
                      +.+..+..  ..+|+.+.|++.|.+++....+       +.+++.+       ..+++..+..+.+.++.+-|+|-++++
T Consensus        85 k~la~~k~--~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 KQLATWKT--NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             cEEEEeec--CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            87777654  4579999999999998877654       4555554       224566777788999999999999999


Q ss_pred             EEeecCCeEEEeeC
Q psy12456        149 ASSSMDRTLKLYSL  162 (162)
Q Consensus       149 ~s~s~D~~i~iw~~  162 (162)
                      ++|..||.|..||+
T Consensus       163 i~Ghe~G~is~~da  176 (327)
T KOG0643|consen  163 IAGHEDGSISIYDA  176 (327)
T ss_pred             EEecCCCcEEEEEc
Confidence            99999999999984

>KOG1446|consensus

Probab=99.87  E-value=9.8e-20  Score=126.37  Aligned_cols=151  Identities=20%  Similarity=0.313  Sum_probs=121.8

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC--------------------------------------------eee
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ--------------------------------------------KNV   43 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~--------------------------------------------~~~   43 (162)
                      ...|+++.|+++|.++++.+.|..++|||..++                                            +.+
T Consensus        14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence            568999999999999999999999999998754                                            235


Q ss_pred             eeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeC
Q psy12456         44 TDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCK  121 (162)
Q Consensus        44 ~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~  121 (162)
                      +.|.+|...|.+++.+|-+..+++++.|++|++||+|..++...+....   -..++|.|+|-++|++...  +++|+.+
T Consensus        94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~GLifA~~~~~~~IkLyD~R  170 (311)
T KOG1446|consen   94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEGLIFALANGSELIKLYDLR  170 (311)
T ss_pred             EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCCcEEEEecCCCeEEEEEec
Confidence            6778899999999999988999999999999999999777666655432   2457899999999998765  7888876


Q ss_pred             Cc--eEEEEee---cCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        122 QW--QELAMFN---EHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       122 ~~--~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..  .+...+.   +.....+.++|||+|+++.-+...+.+++-|
T Consensus       171 s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lD  215 (311)
T KOG1446|consen  171 SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLD  215 (311)
T ss_pred             ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEE
Confidence            54  2333332   3456689999999999998888888777654

>KOG0647|consensus

Probab=99.87  E-value=3e-20  Score=128.54  Aligned_cols=155  Identities=21%  Similarity=0.299  Sum_probs=120.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCC--EEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY--YLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+..+|-++.|+.||..+++|+.|+++++||+.++ ....+..|+++|..+.|-+...  .|++||.|++|++||.|...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            56788999999999999999999999999999998 4566788999999999987554  89999999999999998766


Q ss_pred             ceeEEeeCC----------------------------------------CCCeeEEEECCCCCEEEEecccEEEEE--eC
Q psy12456         84 NFKTLQLDP----------------------------------------NYEIRDLCFDQSGTYMAVAGTDVRVFL--CK  121 (162)
Q Consensus        84 ~~~~~~~~~----------------------------------------~~~v~~~~~~~~~~~~~~~~~~~~i~~--~~  121 (162)
                      .+.++++..                                        +..++|++..++....+.|+-+.++.+  .+
T Consensus       149 pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  149 PVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             eeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence            543333210                                        123778888887777788887755443  33


Q ss_pred             Cc--eEEEEeecCc---------ccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        122 QW--QELAMFNEHT---------AMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       122 ~~--~~~~~~~~h~---------~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..  +.--.|+.|.         -.|++++|.|....|+|++.||+..+||
T Consensus       229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD  279 (347)
T KOG0647|consen  229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD  279 (347)
T ss_pred             CCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence            32  1112344443         2588999999999999999999999998

>KOG0281|consensus

Probab=99.86  E-value=2.8e-21  Score=136.20  Aligned_cols=147  Identities=18%  Similarity=0.358  Sum_probs=117.4

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      ..+|.|+++.  ...+++|..|++|+|||.++-.+.+.+.+|.+.|.+++|+  .+.+++|+.|.+|++||..+.+++..
T Consensus       197 skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t  272 (499)
T KOG0281|consen  197 SKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT  272 (499)
T ss_pred             CCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence            4567888765  4568899999999999998888899999999999999985  55999999999999999988776543


Q ss_pred             EeeC------------------------------------------CCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc
Q psy12456         88 LQLD------------------------------------------PNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW  123 (162)
Q Consensus        88 ~~~~------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~  123 (162)
                      +..|                                          |...|+.+.|+  .+|+++++.|  +++|+..+.
T Consensus       273 lihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~  350 (499)
T KOG0281|consen  273 LIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC  350 (499)
T ss_pred             HhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence            3222                                          11234444543  4688888877  788888888


Q ss_pred             eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       124 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +.++.+.+|+..|-++.+  .++++++||.|.+|++||+
T Consensus       351 efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi  387 (499)
T KOG0281|consen  351 EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI  387 (499)
T ss_pred             eeehhhhcccccceehhc--cCeEEEecCCCceEEEEec
Confidence            888888999998888877  4888899999999999984

>KOG1274|consensus

Probab=99.86  E-value=3.7e-20  Score=143.02  Aligned_cols=154  Identities=19%  Similarity=0.355  Sum_probs=127.1

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      .++..++++.+|+++|.|+.|-.|++-++........+.+|+++|.++.|+|.+++|++.+.||.|++||+.+......+
T Consensus        97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl  176 (933)
T KOG1274|consen   97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTL  176 (933)
T ss_pred             ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhc
Confidence            46789999999999999999999999999988889999999999999999999999999999999999999876543332


Q ss_pred             ee-------CCCCCeeEEEECCC-CCEEEEeccc-EEEEEeCCceEEEEee--cCcccEEEEEECCCCceEEEeecCCeE
Q psy12456         89 QL-------DPNYEIRDLCFDQS-GTYMAVAGTD-VRVFLCKQWQELAMFN--EHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        89 ~~-------~~~~~v~~~~~~~~-~~~~~~~~~~-~~i~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      ..       .....+..++|+|+ |++++.+..+ +++|....|+....+.  .+...+..+.|+|.|+|||+++.|+.|
T Consensus       177 ~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I  256 (933)
T KOG1274|consen  177 TGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQI  256 (933)
T ss_pred             ccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcE
Confidence            21       11223567899999 4555555444 7888888887665543  455569999999999999999999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      .+||+
T Consensus       257 ~vWnv  261 (933)
T KOG1274|consen  257 LVWNV  261 (933)
T ss_pred             EEEec
Confidence            99985

>KOG0299|consensus

Probab=99.86  E-value=1.6e-20  Score=135.71  Aligned_cols=153  Identities=24%  Similarity=0.362  Sum_probs=129.5

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      |..-+.+++++|||+|||+|+.|..|.|||.++.++++.|++|.+.|.+++|......|.+++.|+.+++|++..+..+.
T Consensus       201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve  280 (479)
T KOG0299|consen  201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE  280 (479)
T ss_pred             ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence            44567889999999999999999999999999999999999999999999999988899999999999999998777777


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++..|+. .|..+.-..-++.+.+|+.|  .++|.. .-+....|.+|.+.+-+++|-. ...|++||.||.|.+|++
T Consensus       281 tlyGHqd-~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  281 TLYGHQD-GVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSL  355 (479)
T ss_pred             HHhCCcc-ceeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeee
Confidence            7766554 58888777777888888787  666655 2223445788999999999974 456789999999999985

>KOG0264|consensus

Probab=99.86  E-value=3.2e-20  Score=133.77  Aligned_cols=149  Identities=20%  Similarity=0.352  Sum_probs=119.1

Q ss_pred             EEEeCC-CCcEEEEeeCCCcEEEEECCCCe-------eeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEccc--
Q psy12456         13 TAQLHP-DGLIFGIGTSDSQVQIWDLKKQK-------NVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRK--   81 (162)
Q Consensus        13 ~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~-------~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~--   81 (162)
                      .+.|++ +.-.+++|+.|++|.+||+....       +...|.+|...|..++|++ +...+++++.|+.+.+||.|.  
T Consensus       182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~  261 (422)
T KOG0264|consen  182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT  261 (422)
T ss_pred             ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC
Confidence            367887 33378899999999999997532       3456789999999999998 567899999999999999995  


Q ss_pred             CcceeEEeeCCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCc-eEEEEeecCcccEEEEEECCCC-ceEEEeecCCe
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQW-QELAMFNEHTAMVTGVRFGTHA-HYLASSSMDRT  156 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~  156 (162)
                      .+...... .+..++.|+.|+|- +..||+|+.|  +.+|+.+.. +++..+.+|...|..+.|||+. ..|||++.|+.
T Consensus       262 ~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r  340 (422)
T KOG0264|consen  262 SKPSHSVK-AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR  340 (422)
T ss_pred             CCCccccc-ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc
Confidence            33333333 34568999999995 5677888877  667776543 5678899999999999999975 57799999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      +.+||+
T Consensus       341 l~vWDl  346 (422)
T KOG0264|consen  341 LNVWDL  346 (422)
T ss_pred             EEEEec
Confidence            999996

>KOG1539|consensus

Probab=99.85  E-value=1.9e-20  Score=143.48  Aligned_cols=153  Identities=22%  Similarity=0.357  Sum_probs=133.3

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeec---cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF---QLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .-.+++++.++=|+....|++.|.|.+||+++|-...+|   ++|.++|++++...-++.+++++.+|.+++||..+...
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l  527 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL  527 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence            457899999999999999999999999999999888888   58999999999999899999999999999999987665


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...+...  ..+.++..+.....++.+..+  +.+++..+.+.++.|.+|...|+++.|||||+|+++++.|++||+||+
T Consensus       528 ~~~l~l~--~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl  605 (910)
T KOG1539|consen  528 KKSLRLG--SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL  605 (910)
T ss_pred             eeeeccC--CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence            5555443  346777788777778887777  666666666778899999999999999999999999999999999996

>KOG0267|consensus

Probab=99.85  E-value=1.2e-21  Score=148.08  Aligned_cols=158  Identities=23%  Similarity=0.411  Sum_probs=140.7

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      +.+|...+.++..-..++.+++|+.|..+-+|...+...+..|.+|..+|.++.|+++..+|+.|+.+|+|++||+...+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            45667778888887788899999999999999998888888999999999999999999999999999999999998777


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .++++.. +...+.++.|+|-+.|++.++.|  .++|+.+...+...+.+|...|..++|+|+|+|+++++.|.+++|||
T Consensus       104 ~vrtLtg-h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d  182 (825)
T KOG0267|consen  104 IVRTLTG-HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD  182 (825)
T ss_pred             hhhhhhc-cccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence            6776655 44568899999999999888876  78888887788999999999999999999999999999999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       183 ~  183 (825)
T KOG0267|consen  183 L  183 (825)
T ss_pred             c
Confidence            5

>KOG0313|consensus

Probab=99.85  E-value=8.4e-20  Score=129.51  Aligned_cols=153  Identities=14%  Similarity=0.272  Sum_probs=129.5

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      +-|.++|.++.|.+ ...+.+++.|.+|+.||+.+++.+.++... .++.+++.+|...+|++|+.|..+++||.|+...
T Consensus       257 ~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  257 EGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             cccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence            45788999999998 557789999999999999999988887764 4789999999999999999999999999987642


Q ss_pred             ---eeEEeeCCCCCeeEEEECCCCC-EEEEeccc--EEEEEeCCce-EEEEeecCcccEEEEEECCCCceEEEeecCCeE
Q psy12456         85 ---FKTLQLDPNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQWQ-ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        85 ---~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                         .+.+.. |..-|..+.|+|... .|++++.|  +++|+++... ++..+.+|...|.++.|+ ++..+++||.|.++
T Consensus       335 s~v~~s~~g-H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l  412 (423)
T KOG0313|consen  335 SVVSQSLIG-HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKL  412 (423)
T ss_pred             ceeEEeeec-chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceE
Confidence               233444 445799999999765 46677877  7899988765 888899999999999998 47789999999999


Q ss_pred             EEee
Q psy12456        158 KLYS  161 (162)
Q Consensus       158 ~iw~  161 (162)
                      +|+.
T Consensus       413 ~i~~  416 (423)
T KOG0313|consen  413 RIFK  416 (423)
T ss_pred             EEec
Confidence            9975

>KOG0283|consensus

Probab=99.85  E-value=8.2e-20  Score=139.77  Aligned_cols=155  Identities=19%  Similarity=0.290  Sum_probs=120.8

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      +|..-|||++|+| |.+||++|+-||++|||++...+.+.-...+ .-|++++|.|||++.+.|+.+|.+++|+....+.
T Consensus       407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~  485 (712)
T KOG0283|consen  407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL  485 (712)
T ss_pred             ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence            4677899999999 9999999999999999999876666544544 6899999999999999999999999999987665


Q ss_pred             eeEEeeC--------CCCCeeEEEECCCCC-EEEEeccc--EEEEEeCCceEEEEeecCccc--EEEEEECCCCceEEEe
Q psy12456         85 FKTLQLD--------PNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQWQELAMFNEHTAM--VTGVRFGTHAHYLASS  151 (162)
Q Consensus        85 ~~~~~~~--------~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~l~s~  151 (162)
                      ...+..+        +. .|+.+.|.|... .+++.+.|  ++|++.+..+.+..|+++...  =....|+.||++++++
T Consensus       486 ~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  486 VSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA  564 (712)
T ss_pred             EEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence            4443321        22 589999987543 24444444  888887666666666654321  2345789999999999


Q ss_pred             ecCCeEEEeeC
Q psy12456        152 SMDRTLKLYSL  162 (162)
Q Consensus       152 s~D~~i~iw~~  162 (162)
                      +.|..|.+|++
T Consensus       565 seDs~VYiW~~  575 (712)
T KOG0283|consen  565 SEDSWVYIWKN  575 (712)
T ss_pred             ecCceEEEEeC
Confidence            99999999984

>KOG0300|consensus

Probab=99.85  E-value=1.3e-20  Score=131.69  Aligned_cols=155  Identities=22%  Similarity=0.360  Sum_probs=133.2

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEEC------CC----------------------------------Ceeeee
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDL------KK----------------------------------QKNVTD   45 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~------~~----------------------------------~~~~~~   45 (162)
                      -|..+|++++||+.+.++++++.|++..||..      .+                                  .-+++.
T Consensus       188 GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~  267 (481)
T KOG0300|consen  188 GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMR  267 (481)
T ss_pred             ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeee
Confidence            46678999999999999999999999999962      10                                  025678


Q ss_pred             ccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc
Q psy12456         46 FQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW  123 (162)
Q Consensus        46 ~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~  123 (162)
                      |++|.++|.+..|-..|+.+++++.|.+..+||+.+.+.++.+..| ..+.+.++-+|..+++++++.|  .++|+++..
T Consensus       268 ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH-d~ELtHcstHptQrLVvTsSrDtTFRLWDFRea  346 (481)
T KOG0300|consen  268 LTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH-DSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA  346 (481)
T ss_pred             eeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc-chhccccccCCcceEEEEeccCceeEeccchhh
Confidence            8899999999999999999999999999999999998888887764 4568888999999999999988  788888643


Q ss_pred             -eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        124 -QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       124 -~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                       +.+..|++|...|+++.|..+. .+++|+.|++|++|||
T Consensus       347 I~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdL  385 (481)
T KOG0300|consen  347 IQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDL  385 (481)
T ss_pred             cceeeeecccccceeEEEEecCC-ceeecCCCceEEEeee
Confidence             5677899999999999998654 5679999999999996

>KOG0772|consensus

Probab=99.85  E-value=3.7e-20  Score=135.90  Aligned_cols=158  Identities=14%  Similarity=0.271  Sum_probs=122.8

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee---------ee---eccCCCCCEEEEEEccC-CCEEEEEeCC
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN---------VT---DFQLDAGPIQALSFSEN-GYYLATAADE   71 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~---------~~---~~~~~~~~v~~i~~~~~-~~~l~s~~~d   71 (162)
                      -++...|++++|++.|..+++.+..-+.+|+|-...+.         |.   .-++|...+++.+|+|+ ...+++++.|
T Consensus       211 P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D  290 (641)
T KOG0772|consen  211 PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD  290 (641)
T ss_pred             cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCC
Confidence            36778899999999999888888888999999543222         21   22578888999999995 5689999999


Q ss_pred             CeEEEEEcccCcc-eeEEee----CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCce---EEEEeecCcc--cEEEE
Q psy12456         72 NCVKLWDLRKLKN-FKTLQL----DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ---ELAMFNEHTA--MVTGV  139 (162)
Q Consensus        72 ~~v~~wd~~~~~~-~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~---~~~~~~~h~~--~v~~~  139 (162)
                      +++++||+.+.+. .+.+..    ..+.+++.|+|+|+++++|.|-.|  +.+|....+.   ....-..|..  .|+++
T Consensus       291 gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi  370 (641)
T KOG0772|consen  291 GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI  370 (641)
T ss_pred             CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE
Confidence            9999999976543 222221    224568899999999999998777  6777654332   2233457877  89999


Q ss_pred             EECCCCceEEEeecCCeEEEeeC
Q psy12456        140 RFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       140 ~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +||++|++|+|=+.|.++++|||
T Consensus       371 ~FS~dg~~LlSRg~D~tLKvWDL  393 (641)
T KOG0772|consen  371 SFSYDGNYLLSRGFDDTLKVWDL  393 (641)
T ss_pred             EeccccchhhhccCCCceeeeec
Confidence            99999999999999999999996

>KOG0641|consensus

Probab=99.84  E-value=2.7e-19  Score=120.01  Aligned_cols=146  Identities=21%  Similarity=0.397  Sum_probs=123.0

Q ss_pred             eCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC--C-----CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456         16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL--D-----AGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        16 ~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~--~-----~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ++.+|-.+++|+.|.+||+||++-...+.++..  |     ...|.+++..|.|++|++|-.|....+||+|..+.++.+
T Consensus       190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f  269 (350)
T KOG0641|consen  190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF  269 (350)
T ss_pred             EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee
Confidence            566788999999999999999999888877653  2     256899999999999999999999999999998888888


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEecccEEEEEeCC------ceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ------WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..| ...|+|+.|+|.-.|+++++.|.+|...+-      --++....+|+..+..+.|.|+.--|++.+.|+++.+|-+
T Consensus       270 ~ph-sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  270 HPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             CCC-ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            764 457999999999999999999966544221      1133446789999999999999988999999999999964

>KOG0270|consensus

Probab=99.84  E-value=6e-20  Score=132.33  Aligned_cols=155  Identities=17%  Similarity=0.305  Sum_probs=123.5

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .|...|-++.++. ..++||+|+.|.+|++||+.++++..++..|..+|.+++|+| ...+|++|+.|+++++.|.|...
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~  320 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS  320 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence            3455555666765 556899999999999999999999999999999999999999 57899999999999999999533


Q ss_pred             ce-eEEeeCCCCCeeEEEECCCCCEEE-EecccEEEEEe--CC-ceEEEEeecCcccEEEEEECCCC-ceEEEeecCCeE
Q psy12456         84 NF-KTLQLDPNYEIRDLCFDQSGTYMA-VAGTDVRVFLC--KQ-WQELAMFNEHTAMVTGVRFGTHA-HYLASSSMDRTL  157 (162)
Q Consensus        84 ~~-~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~i~~~--~~-~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i  157 (162)
                      .. ..++.  ...|..+.|.|...... ++..|..++.+  +. .+++-+++.|..+|+++.+++.. .++++++.|+.|
T Consensus       321 ~s~~~wk~--~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~V  398 (463)
T KOG0270|consen  321 NSGKEWKF--DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVV  398 (463)
T ss_pred             ccCceEEe--ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceE
Confidence            32 33443  34688999999765544 44455665544  33 37788899999999999998764 577899999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      ++|++
T Consensus       399 klw~~  403 (463)
T KOG0270|consen  399 KLWKF  403 (463)
T ss_pred             EEEee
Confidence            99985

>KOG1407|consensus

Probab=99.84  E-value=3.5e-19  Score=121.21  Aligned_cols=151  Identities=19%  Similarity=0.287  Sum_probs=127.1

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ..++-+.|+-++.+|......|+|.|..+..-++++++++|.....+|.|+|+|+++++|+.|..+.+||+...-+++.+
T Consensus       148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i  227 (313)
T KOG1407|consen  148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI  227 (313)
T ss_pred             ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence            45677888888888888888899999999999999999999999999999999999999999999999999877776666


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecC---------CeE
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD---------RTL  157 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D---------~~i  157 (162)
                      . ..+.+|+.++|+.+|++||+|+.|  +-|-...++..+-++. +.++...++|.|...+||=++.|         +++
T Consensus       228 s-RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~v  305 (313)
T KOG1407|consen  228 S-RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTV  305 (313)
T ss_pred             c-cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCcccccccee
Confidence            4 356789999999999999999999  5555566666665554 67788999999999999877654         567


Q ss_pred             EEee
Q psy12456        158 KLYS  161 (162)
Q Consensus       158 ~iw~  161 (162)
                      ++|-
T Consensus       306 KiFG  309 (313)
T KOG1407|consen  306 KIFG  309 (313)
T ss_pred             EEec
Confidence            7663

>KOG1332|consensus

Probab=99.84  E-value=3e-20  Score=125.36  Aligned_cols=155  Identities=15%  Similarity=0.299  Sum_probs=123.2

Q ss_pred             CCCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCCe--eeeeccCCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEEcc
Q psy12456          7 GGPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQK--NVTDFQLDAGPIQALSFSE--NGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         7 ~~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~d~~v~~wd~~   80 (162)
                      |..+|..++|..  .|.+||+.+.||+|.||.-.+++  ....+..|...|++|+|.|  .|-.|++++.||.|.+.+++
T Consensus        55 h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~  134 (299)
T KOG1332|consen   55 HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYD  134 (299)
T ss_pred             CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEc
Confidence            455777777765  99999999999999999987774  3455678999999999998  47799999999999999987


Q ss_pred             cC--cceeEEeeCCCCCeeEEEECCC---C-----------CEEEEeccc--EEEEEeCC--ceEEEEeecCcccEEEEE
Q psy12456         81 KL--KNFKTLQLDPNYEIRDLCFDQS---G-----------TYMAVAGTD--VRVFLCKQ--WQELAMFNEHTAMVTGVR  140 (162)
Q Consensus        81 ~~--~~~~~~~~~~~~~v~~~~~~~~---~-----------~~~~~~~~~--~~i~~~~~--~~~~~~~~~h~~~v~~~~  140 (162)
                      ..  ....+....|...+++++|.|.   |           +.|++|+-|  ++||....  |.....+.+|++.|..++
T Consensus       135 ~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVA  214 (299)
T KOG1332|consen  135 SSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVA  214 (299)
T ss_pred             CCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhh
Confidence            54  1222233334556899999986   4           558888877  77777644  455566899999999999


Q ss_pred             ECCCC----ceEEEeecCCeEEEee
Q psy12456        141 FGTHA----HYLASSSMDRTLKLYS  161 (162)
Q Consensus       141 ~s~~~----~~l~s~s~D~~i~iw~  161 (162)
                      |.|.-    .++|++|.||++.||.
T Consensus       215 waP~~gl~~s~iAS~SqDg~viIwt  239 (299)
T KOG1332|consen  215 WAPSVGLPKSTIASCSQDGTVIIWT  239 (299)
T ss_pred             hccccCCCceeeEEecCCCcEEEEE
Confidence            99863    5899999999999995

>KOG0288|consensus

Probab=99.84  E-value=1.8e-19  Score=129.00  Aligned_cols=154  Identities=17%  Similarity=0.298  Sum_probs=121.8

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc--
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN--   84 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~--   84 (162)
                      ...+|++++|.++++.+.+.+.|+.+++|++...+...++.+|.+.|.++.|......+++|+.|.+++.||+.+..+  
T Consensus       218 s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~k  297 (459)
T KOG0288|consen  218 SLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSK  297 (459)
T ss_pred             cCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheec
Confidence            346799999999999999999999999999999999999999999999988877665577777777777777654322  


Q ss_pred             -------------------------------------eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceE
Q psy12456         85 -------------------------------------FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQE  125 (162)
Q Consensus        85 -------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~  125 (162)
                                                           ......  ...|+++..++++.-+++.+.|  +++++.+..+.
T Consensus       298 t~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~--gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI  375 (459)
T KOG0288|consen  298 TVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPL--GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI  375 (459)
T ss_pred             cccccccccceEecceeeeecccccceEEEeccCCceeeEeec--CcceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence                                                 222222  1258899999999999988876  77888777665


Q ss_pred             EEEeecC----cccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        126 LAMFNEH----TAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       126 ~~~~~~h----~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...+...    ....+.+.|||++.|+++||.||.|+||++
T Consensus       376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v  416 (459)
T KOG0288|consen  376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV  416 (459)
T ss_pred             EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence            5554421    123788999999999999999999999985

>KOG1332|consensus

Probab=99.84  E-value=7.2e-20  Score=123.54  Aligned_cols=156  Identities=19%  Similarity=0.339  Sum_probs=124.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC---eeeeeccCCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEEcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ---KNVTDFQLDAGPIQALSFSE--NGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~d~~v~~wd~~   80 (162)
                      .|...|-.++..--|+.||+.++|++|+||+.+..   +++.++++|.+||..++|..  .|..|++++.|+.|.+|.-.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~   88 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE   88 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence            45666767777778999999999999999999864   56889999999999999964  79999999999999999976


Q ss_pred             cCc--ceeEEeeCCCCCeeEEEECCC--CCEEEEeccc--EEEEEeCC---ceEEEEeecCcccEEEEEECCC---C---
Q psy12456         81 KLK--NFKTLQLDPNYEIRDLCFDQS--GTYMAVAGTD--VRVFLCKQ---WQELAMFNEHTAMVTGVRFGTH---A---  145 (162)
Q Consensus        81 ~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~--~~i~~~~~---~~~~~~~~~h~~~v~~~~~s~~---~---  145 (162)
                      +.+  ....+.. +...+++++|.|.  |..|++++.|  +.|..++.   +..-+....|...|++++|.|-   +   
T Consensus        89 ~g~w~k~~e~~~-h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   89 NGRWTKAYEHAA-HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCchhhhhhhhh-hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            543  2222333 4557999999986  6788888888  55665543   3344557889999999999985   3   


Q ss_pred             --------ceEEEeecCCeEEEeeC
Q psy12456        146 --------HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       146 --------~~l~s~s~D~~i~iw~~  162 (162)
                              +.|++|+.|..|+||+.
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~  192 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKF  192 (299)
T ss_pred             ccCcccccceeeccCCccceeeeec
Confidence                    57999999999999974

>KOG0278|consensus

Probab=99.84  E-value=5.6e-20  Score=124.61  Aligned_cols=154  Identities=15%  Similarity=0.300  Sum_probs=135.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .|...|.+++|+.|.++|++|+.+..+||||+++. .+...+.+|.+.|+.+-|+...+.+++...|++||+||.++...
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~  177 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE  177 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE
Confidence            67788999999999999999999999999999875 46678899999999999999888999999999999999999998


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++++...  .++.++.++++|.++..+... ++.|+.+.+..++.++-.. .|.+.+++|+..+++.|+.|..++-||.
T Consensus       178 v~sL~~~--s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~-nV~SASL~P~k~~fVaGged~~~~kfDy  253 (334)
T KOG0278|consen  178 VQSLEFN--SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPC-NVESASLHPKKEFFVAGGEDFKVYKFDY  253 (334)
T ss_pred             EEEEecC--CCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcc-ccccccccCCCceEEecCcceEEEEEec
Confidence            8888764  358999999999999888655 8888888888888776443 4888999999999999999999998873

>KOG0647|consensus

Probab=99.83  E-value=6.6e-19  Score=121.92  Aligned_cols=155  Identities=15%  Similarity=0.300  Sum_probs=119.0

Q ss_pred             ccCCCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCC-Ceee-eeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456          3 ASGAGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKK-QKNV-TDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus         3 ~~~~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      .-+.....|.+++|+| ...+++.|+.||+||+|+++. +..+ +....|.+||.+++|+.||..+++|+.|+.+++|||
T Consensus        22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence            4467788999999999 777888999999999999986 3333 334468899999999999999999999999999999


Q ss_pred             ccCcceeEEeeCCCCCeeEEEECCCCC--EEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCC
Q psy12456         80 RKLKNFKTLQLDPNYEIRDLCFDQSGT--YMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                      .+.+ +..... |..+|+.+.|-+...  .|++||.|  ++.|+.+...++..++-. ..|.++..  ...+++.+..++
T Consensus       102 ~S~Q-~~~v~~-Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eRvYa~Dv--~~pm~vVata~r  176 (347)
T KOG0647|consen  102 ASGQ-VSQVAA-HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ERVYAADV--LYPMAVVATAER  176 (347)
T ss_pred             cCCC-eeeeee-cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ceeeehhc--cCceeEEEecCC
Confidence            8764 344444 456799998877554  88999998  677777766666555432 23554433  245777788889


Q ss_pred             eEEEeeC
Q psy12456        156 TLKLYSL  162 (162)
Q Consensus       156 ~i~iw~~  162 (162)
                      .|.+|+|
T Consensus       177 ~i~vynL  183 (347)
T KOG0647|consen  177 HIAVYNL  183 (347)
T ss_pred             cEEEEEc
Confidence            9998875

>KOG0275|consensus

Probab=99.83  E-value=3.5e-20  Score=129.88  Aligned_cols=156  Identities=21%  Similarity=0.277  Sum_probs=131.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      +|..+|+++.|+.|+..+.+++-|.++|+.-+++|+.+..|++|...|+...|.+||+++++++.||+|++|+.++.+++
T Consensus       304 AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~  383 (508)
T KOG0275|consen  304 AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL  383 (508)
T ss_pred             hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhh
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999998765543


Q ss_pred             eEEeeC----------------------------------------------CCCCeeEEEECCCCCEEEEecccEEEEE
Q psy12456         86 KTLQLD----------------------------------------------PNYEIRDLCFDQSGTYMAVAGTDVRVFL  119 (162)
Q Consensus        86 ~~~~~~----------------------------------------------~~~~v~~~~~~~~~~~~~~~~~~~~i~~  119 (162)
                      .+++..                                              .....-+++++|.|.++.+.+.|..+|-
T Consensus       384 ~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYC  463 (508)
T KOG0275|consen  384 STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYC  463 (508)
T ss_pred             hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEE
Confidence            322210                                              0112345678999999998888855543


Q ss_pred             --eCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        120 --CKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       120 --~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                        ..+++....+.-|...|-++.-.|+.+.+|+-+.||.+++|.
T Consensus       464 F~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  464 FSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence              345556667788999999999999999999999999999995

>KOG0308|consensus

Probab=99.82  E-value=9.9e-19  Score=131.26  Aligned_cols=157  Identities=18%  Similarity=0.269  Sum_probs=137.7

Q ss_pred             ccCCCCCcEEEEEe-CCCCcEEEEeeCCCcEEEEECCCCe--e--------eeecc-CCCCCEEEEEEccCCCEEEEEeC
Q psy12456          3 ASGAGGPTLTTAQL-HPDGLIFGIGTSDSQVQIWDLKKQK--N--------VTDFQ-LDAGPIQALSFSENGYYLATAAD   70 (162)
Q Consensus         3 ~~~~~~~~v~~~~~-~~~g~~~a~g~~dg~i~~wd~~~~~--~--------~~~~~-~~~~~v~~i~~~~~~~~l~s~~~   70 (162)
                      ..+.|..=|.|+++ .++..++|+|+-|+.|.|||++++.  .        ...+. ++..+|.+++.++.+..+++|+.
T Consensus       112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt  191 (735)
T KOG0308|consen  112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT  191 (735)
T ss_pred             hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence            45678888999999 8899999999999999999999762  2        23344 67789999999999999999999


Q ss_pred             CCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceE
Q psy12456         71 ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        71 d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  148 (162)
                      .+.+++||-++.+.+.+++.|.. .|+++-.+++|..+++++.|  +++|++..-.++.++..|+..|+++.-+|.=+++
T Consensus       192 ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~v  270 (735)
T KOG0308|consen  192 EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHV  270 (735)
T ss_pred             ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceE
Confidence            99999999998888888886554 59999999999999999998  7888888778889999999999999999998999


Q ss_pred             EEeecCCeEEEe
Q psy12456        149 ASSSMDRTLKLY  160 (162)
Q Consensus       149 ~s~s~D~~i~iw  160 (162)
                      -+|+.|+.|..=
T Consensus       271 YsG~rd~~i~~T  282 (735)
T KOG0308|consen  271 YSGGRDGNIYRT  282 (735)
T ss_pred             EecCCCCcEEec
Confidence            999999988653

>KOG0274|consensus

Probab=99.82  E-value=5.4e-19  Score=134.89  Aligned_cols=149  Identities=21%  Similarity=0.362  Sum_probs=128.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC-cc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL-KN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~-~~   84 (162)
                      .+..+|.++..+  +.++++|+.||+|++||+.+++++.++.+|.+.|.++.+.+. .++++|+.|++|++||+++. ++
T Consensus       329 ~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c  405 (537)
T KOG0274|consen  329 GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC  405 (537)
T ss_pred             cccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh
Confidence            488999999998  789999999999999999999999999999999999988765 89999999999999999988 77


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeec-CcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE-HTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +..+..+.. .+.  .+...++++++++.|  +++|+....+.++.+.+ |...|+.+.+.  ...+++++.|+++++||
T Consensus       406 ~~tl~~h~~-~v~--~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  406 IHTLQGHTS-LVS--SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             hhhhcCCcc-ccc--ccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            777766543 343  344567888888877  88998888999998888 77889988876  56778899999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       481 l  481 (537)
T KOG0274|consen  481 L  481 (537)
T ss_pred             c
Confidence            6

>KOG1036|consensus

Probab=99.82  E-value=1.4e-18  Score=120.36  Aligned_cols=156  Identities=17%  Similarity=0.251  Sum_probs=121.5

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .|.|..+|.++..++....+++|+.|++|++||.+....+..+... ..|.++..  .++.|+.|..|..+.+||+|+..
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~  166 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD  166 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence            5789999999999998888999999999999999986666666544 37877776  47789999999999999999876


Q ss_pred             cee-EEeeCCCCCeeEEEECCCCCEEEEecccEEEEE--eCCc----eEEEEeecCc---------ccEEEEEECCCCce
Q psy12456         84 NFK-TLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL--CKQW----QELAMFNEHT---------AMVTGVRFGTHAHY  147 (162)
Q Consensus        84 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~--~~~~----~~~~~~~~h~---------~~v~~~~~s~~~~~  147 (162)
                      ... .....-++.++|+++-|++.=.++++-+.||..  ++..    ..-..|+.|.         -+|++++|+|-.+.
T Consensus       167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t  246 (323)
T KOG1036|consen  167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT  246 (323)
T ss_pred             chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence            432 112223467999999998888888888877754  2222    1112355553         27999999999999


Q ss_pred             EEEeecCCeEEEeeC
Q psy12456        148 LASSSMDRTLKLYSL  162 (162)
Q Consensus       148 l~s~s~D~~i~iw~~  162 (162)
                      |+||+.||-|.+||+
T Consensus       247 faTgGsDG~V~~Wd~  261 (323)
T KOG1036|consen  247 FATGGSDGIVNIWDL  261 (323)
T ss_pred             EEecCCCceEEEccC
Confidence            999999999999985

>KOG0268|consensus

Probab=99.82  E-value=8.3e-20  Score=129.07  Aligned_cols=150  Identities=19%  Similarity=0.418  Sum_probs=120.3

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      ..+..++-+..++.+|+++.+  |.|||.+...|+..+......|.++.|+| ....|+++..|+.|.+||+|..+.+.+
T Consensus       148 s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K  225 (433)
T KOG0268|consen  148 SVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK  225 (433)
T ss_pred             ccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccce
Confidence            344555566666677766643  78888877788888887777899999999 456788888999999999998887777


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCC---ceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ---WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ......  -+.+||+|..-.+++|+.|..+|.++.   ..++..+.+|...|.++.|||.|+-|++||.|.+|+||.+
T Consensus       226 Vi~~mR--TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~  301 (433)
T KOG0268|consen  226 VILTMR--TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPV  301 (433)
T ss_pred             eeeecc--ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeec
Confidence            665443  477999998888888999977776532   3467778899999999999999999999999999999863

>KOG2394|consensus

Probab=99.82  E-value=6.2e-19  Score=130.02  Aligned_cols=137  Identities=20%  Similarity=0.397  Sum_probs=109.8

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC----------------------------eeeeeccCCCCCEEEE
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ----------------------------KNVTDFQLDAGPIQAL   56 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~----------------------------~~~~~~~~~~~~v~~i   56 (162)
                      .....||++.|=| +..+|.+.-.+|.+.+||..--                            .++..+..-.++|...
T Consensus       217 i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f  296 (636)
T KOG2394|consen  217 INKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF  296 (636)
T ss_pred             ccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce
Confidence            3457899999998 6668888999999999976310                            1122222223578889


Q ss_pred             EEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcc
Q psy12456         57 SFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTA  134 (162)
Q Consensus        57 ~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~  134 (162)
                      +|+|||++|++.+.||.+|++|..+++.+..++. .-....|+||+|||+||++|+.|  +.||.+.....+..-++|+.
T Consensus       297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkS  375 (636)
T KOG2394|consen  297 AFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKS  375 (636)
T ss_pred             eEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccc
Confidence            9999999999999999999999988765544432 22358999999999999999988  88999988889999999999


Q ss_pred             cEEEEEECC
Q psy12456        135 MVTGVRFGT  143 (162)
Q Consensus       135 ~v~~~~~s~  143 (162)
                      +|+.++|.|
T Consensus       376 WVs~VaFDp  384 (636)
T KOG2394|consen  376 WVSVVAFDP  384 (636)
T ss_pred             ceeeEeecc
Confidence            999999984

>KOG0302|consensus

Probab=99.82  E-value=1.4e-18  Score=123.47  Aligned_cols=149  Identities=19%  Similarity=0.386  Sum_probs=112.0

Q ss_pred             CCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC--eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          7 GGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ--KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         7 ~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      |..+|-.++|+| ...+||+++.||.|+|||.|.+  +.....++|.+-|..|+|+..-.+|++|+.||++++||+|..+
T Consensus       256 H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~  335 (440)
T KOG0302|consen  256 HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK  335 (440)
T ss_pred             cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc
Confidence            778899999999 6669999999999999999987  2333348899999999999988899999999999999998765


Q ss_pred             ---ceeEEeeCCCCCeeEEEECCCC-CEEEEeccc--EEEEEeCCc-----------e------EEEEe-ecCcccEEEE
Q psy12456         84 ---NFKTLQLDPNYEIRDLCFDQSG-TYMAVAGTD--VRVFLCKQW-----------Q------ELAMF-NEHTAMVTGV  139 (162)
Q Consensus        84 ---~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~--~~i~~~~~~-----------~------~~~~~-~~h~~~v~~~  139 (162)
                         .+..+.. |+.+|+++.|+|.. ..+++++.|  +.+|++..-           +      +...| .--...+..+
T Consensus       336 ~~~pVA~fk~-Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~Kev  414 (440)
T KOG0302|consen  336 SGQPVATFKY-HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEV  414 (440)
T ss_pred             CCCcceeEEe-ccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhh
Confidence               3556666 45689999999964 455555555  777875210           0      00111 1123458889


Q ss_pred             EECCCC-ceEEEeecCCe
Q psy12456        140 RFGTHA-HYLASSSMDRT  156 (162)
Q Consensus       140 ~~s~~~-~~l~s~s~D~~  156 (162)
                      .|.++. .++++.+.||-
T Consensus       415 hWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  415 HWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             eeccCCCCeEEEecccce
Confidence            998764 47788888883

>KOG0296|consensus

Probab=99.81  E-value=7.4e-18  Score=119.20  Aligned_cols=154  Identities=13%  Similarity=0.143  Sum_probs=129.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      -|+.+|+++.|+.||.|||+|..+|.|+||...++.....+...-..|.-+.|+|.+..|+.|+.||.+..|.+.+....
T Consensus       104 gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~  183 (399)
T KOG0296|consen  104 GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC  183 (399)
T ss_pred             CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee
Confidence            36789999999999999999999999999999999888888655567888999999999999999999999999876666


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEee-cCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFN-EHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      +.+.. +..++++=+|.|+|+.++++..|  +++|++++.+++..+. ........+.++..+..+.+|+.++.+.+-
T Consensus       184 kv~~G-h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~  260 (399)
T KOG0296|consen  184 KVMSG-HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGV  260 (399)
T ss_pred             eEecC-CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEE
Confidence            66766 45578888999999999999887  7889988888776654 223456677888888888888888877653

>KOG0288|consensus

Probab=99.80  E-value=4.9e-18  Score=121.73  Aligned_cols=149  Identities=17%  Similarity=0.293  Sum_probs=122.1

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEe
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~   89 (162)
                      .++.+..+  ...+.+|-.|++||+||.++..+....+.+. .|+++..++++..|.+++.|.++++.|+++.+..+.+.
T Consensus       304 ~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s  380 (459)
T KOG0288|consen  304 QCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS  380 (459)
T ss_pred             cccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee
Confidence            34444444  5678899999999999999999999988774 89999999999999999999999999999877666655


Q ss_pred             eCC---CCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcc--cEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         90 LDP---NYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTA--MVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        90 ~~~---~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ...   ....+.++|||++.|++.|+.|  +.||+..+.+....+.....  .|++++|+|-|..+++++.++.+.+|.
T Consensus       381 A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  381 AEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            322   2347789999999999999998  55666666666555554333  599999999999999999999999994

>KOG0299|consensus

Probab=99.80  E-value=1.1e-18  Score=126.43  Aligned_cols=158  Identities=23%  Similarity=0.363  Sum_probs=133.6

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeee----ee---c-----------cCCCCCEEEEEEccCCCEE
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV----TD---F-----------QLDAGPIQALSFSENGYYL   65 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~----~~---~-----------~~~~~~v~~i~~~~~~~~l   65 (162)
                      .+.|.-+|++++++|++++..+++.||+|.-|++.+++..    .+   +           +.|...+.+++.++|++||
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl  217 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL  217 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence            3567788999999999999999999999999999887633    11   1           2566678999999999999


Q ss_pred             EEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECC
Q psy12456         66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGT  143 (162)
Q Consensus        66 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~  143 (162)
                      ++|+.|..|.+||.++.++++.+..| ...|.+++|-..-.-+.+++.|  +++|+......+.++-+|...|.++....
T Consensus       218 atgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~  296 (479)
T KOG0299|consen  218 ATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALS  296 (479)
T ss_pred             EecCCCceEEEecCcccchhhccccc-ccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhc
Confidence            99999999999999999998887764 5579999998765556666666  89999888778888899999999998887


Q ss_pred             CCceEEEeecCCeEEEeeC
Q psy12456        144 HAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       144 ~~~~l~s~s~D~~i~iw~~  162 (162)
                      .++.+..|+.|+++++|++
T Consensus       297 reR~vtVGgrDrT~rlwKi  315 (479)
T KOG0299|consen  297 RERCVTVGGRDRTVRLWKI  315 (479)
T ss_pred             ccceEEeccccceeEEEec
Confidence            7888777889999999985

>KOG2445|consensus

Probab=99.80  E-value=2.8e-17  Score=114.27  Aligned_cols=155  Identities=21%  Similarity=0.433  Sum_probs=110.0

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC----eeeeeccCCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEEc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ----KNVTDFQLDAGPIQALSFSE--NGYYLATAADENCVKLWDL   79 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~----~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~d~~v~~wd~   79 (162)
                      -|..-|+++.|.+-|+.+|+++.|++++|||.++.    .....++.|.+.|..|.|.+  -|+.+++++.|+++.+|.-
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            45577999999999999999999999999997654    34566788999999999964  5999999999999999986


Q ss_pred             ccC--cc-------eeEEeeCCCCCeeEEEECCC--CCEEEEeccc--EEEE----------------------------
Q psy12456         80 RKL--KN-------FKTLQLDPNYEIRDLCFDQS--GTYMAVAGTD--VRVF----------------------------  118 (162)
Q Consensus        80 ~~~--~~-------~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~--~~i~----------------------------  118 (162)
                      ...  +.       ..++ ...+..|.+++|.|.  |..+++++.|  +|||                            
T Consensus        91 ~~~~~~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~  169 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK  169 (361)
T ss_pred             cccccccccceeEEEEEe-ecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence            211  10       1111 122333455555442  4444444444  3333                            


Q ss_pred             -----------------------------------Ee----CCceEEEEeecCcccEEEEEECCCC----ceEEEeecCC
Q psy12456        119 -----------------------------------LC----KQWQELAMFNEHTAMVTGVRFGTHA----HYLASSSMDR  155 (162)
Q Consensus       119 -----------------------------------~~----~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~D~  155 (162)
                                                         ..    +.|..+.++.+|..+|.+++|.|.-    +.+|+++.||
T Consensus       170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence                                               22    1234455566788999999999963    5889999999


Q ss_pred             eEEEeeC
Q psy12456        156 TLKLYSL  162 (162)
Q Consensus       156 ~i~iw~~  162 (162)
                       |+||.+
T Consensus       250 -v~I~~v  255 (361)
T KOG2445|consen  250 -VRIFKV  255 (361)
T ss_pred             -EEEEEE
Confidence             999975

>KOG0301|consensus

Probab=99.80  E-value=2.7e-18  Score=129.58  Aligned_cols=147  Identities=19%  Similarity=0.318  Sum_probs=124.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      -|...|+++....++. +++|+.|.++++|-  .++....+++|..+|.+++.-|++ .++||+.|++|++|.-.  +.+
T Consensus        99 gH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~--~~l  172 (745)
T KOG0301|consen   99 GHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG--TLL  172 (745)
T ss_pred             ccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC--chh
Confidence            3667888888888887 88999999999995  477788899999999999999987 78899999999999863  566


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +++..|.+ -|+.+++-+++.++ +++.|  ++.|.. ..+.+.++.+|...|.+++..+.++.+++++.|++++||+
T Consensus       173 ~tf~gHtD-~VRgL~vl~~~~fl-ScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~  247 (745)
T KOG0301|consen  173 KTFSGHTD-CVRGLAVLDDSHFL-SCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWK  247 (745)
T ss_pred             hhhccchh-heeeeEEecCCCeE-eecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEee
Confidence            77777554 59999999887665 55555  566655 5788999999999999999888889999999999999997

>KOG1408|consensus

Probab=99.79  E-value=4.9e-18  Score=129.21  Aligned_cols=156  Identities=19%  Similarity=0.322  Sum_probs=122.0

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc---------------------------------------
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ---------------------------------------   47 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~---------------------------------------   47 (162)
                      ++.++.+++++|+|+.||+|...|.++|||+..-+....++                                       
T Consensus       458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY  537 (1080)
T ss_pred             cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence            45678999999999999999999999999997433332223                                       


Q ss_pred             -------CCCCCEEEEEEcc-------------------------------------------------CCCEEEEEeCC
Q psy12456         48 -------LDAGPIQALSFSE-------------------------------------------------NGYYLATAADE   71 (162)
Q Consensus        48 -------~~~~~v~~i~~~~-------------------------------------------------~~~~l~s~~~d   71 (162)
                             .|...|+++.|..                                                 ..+++++++.|
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQD  617 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQD  617 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecc
Confidence                   3334444444432                                                 22357777778


Q ss_pred             CeEEEEEcccCcceeEEeeCCC--CCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCce
Q psy12456         72 NCVKLWDLRKLKNFKTLQLDPN--YEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHY  147 (162)
Q Consensus        72 ~~v~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  147 (162)
                      ..|++||+.+.+....|+..+.  ...-.+.+.|.|-|+++.-.|  +.++++-+.+.+..+.+|...|++++|.+|-++
T Consensus       618 rnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkH  697 (1080)
T KOG1408|consen  618 RNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKH  697 (1080)
T ss_pred             cceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchh
Confidence            8888888877777776665432  345567889999999998777  678888889999999999999999999999999


Q ss_pred             EEEeecCCeEEEeeC
Q psy12456        148 LASSSMDRTLKLYSL  162 (162)
Q Consensus       148 l~s~s~D~~i~iw~~  162 (162)
                      |++.+.|+.|.+|.+
T Consensus       698 lISvsgDgCIFvW~l  712 (1080)
T KOG1408|consen  698 LISVSGDGCIFVWKL  712 (1080)
T ss_pred             heeecCCceEEEEEC
Confidence            999999999999985

>KOG0322|consensus

Probab=99.79  E-value=1.6e-18  Score=118.24  Aligned_cols=140  Identities=21%  Similarity=0.371  Sum_probs=115.2

Q ss_pred             EEEEeeCCCcEEEEECCCCe----------eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc---e-eE
Q psy12456         22 IFGIGTSDSQVQIWDLKKQK----------NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN---F-KT   87 (162)
Q Consensus        22 ~~a~g~~dg~i~~wd~~~~~----------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~---~-~~   87 (162)
                      ++++|..+|.+.+||+.++.          .+.....|.++|.++.+.+....=++|+.+..+..|.+.....   + ..
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence            56889999999999999873          3344456889999999988666667888888889998863311   1 12


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ....+ ..+..+...||++.+|+++.|  +|||.|++..++..+..|+..|.+++|+|+...+|++|.|..|.+|+|
T Consensus       247 ~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  247 ITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            22222 247888999999999999998  889999999999999999999999999999999999999999999986

>KOG1274|consensus

Probab=99.79  E-value=2.4e-17  Score=127.71  Aligned_cols=154  Identities=20%  Similarity=0.312  Sum_probs=124.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      +|..+-|.+.+.|+|+.+.+.+.||.|++|+.... +.-..+..+...|.+++.  ++.+|++|+.+++|.+|.+..++.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence            45666899999999999999999999999987665 222333335667776665  566999999999999999876553


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      -..+ .....++++++++.+|++++.|+.|  +++...........+.+|+.+|.++.|.|++.+||+.+.||.|++|++
T Consensus        89 ~~iL-~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen   89 DTIL-ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL  167 (933)
T ss_pred             ccee-eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence            2111 1234578999999999999999998  666666666777889999999999999999999999999999999986

>KOG0639|consensus

Probab=99.79  E-value=4.9e-18  Score=124.77  Aligned_cols=157  Identities=15%  Similarity=0.239  Sum_probs=125.9

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC---eeeeecc--CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ---KNVTDFQ--LDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~---~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      -.||+-|.++.++...+.+.+|+. |.|+|||+...   .++..+.  ..+..|+++.+.|||+.|++|+.-.++.+||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            368899999999999999999886 78999999753   3444443  24578999999999999999999999999999


Q ss_pred             ccCcceeEEeeCCC-CCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         80 RKLKNFKTLQLDPN-YEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        80 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      ......-+.+.... ...-.++.+||.+...++-.|  +.||++..-..++.|.+|...+.++..+++|..|-||+.|.+
T Consensus       495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            76543222222111 123457789998876665444  889999888889999999999999999999999999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      ||.||+
T Consensus       575 vRcWDl  580 (705)
T KOG0639|consen  575 VRCWDL  580 (705)
T ss_pred             eeehhh
Confidence            999996

>KOG0290|consensus

Probab=99.78  E-value=1.2e-17  Score=115.33  Aligned_cols=157  Identities=20%  Similarity=0.361  Sum_probs=124.5

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCee---eeeccCCCCCEEEEEEccCC-CEEEEEeCCCeEEEEEcc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKN---VTDFQLDAGPIQALSFSENG-YYLATAADENCVKLWDLR   80 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~i~~~~~~-~~l~s~~~d~~v~~wd~~   80 (162)
                      ....++|+.+|+. |-+++.+.+.|-+-.|||+.++..   ...+-+|+.+|..|+|...+ ..+++.+.||.+|++|+|
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            4456889999998 888999999999999999998733   44566899999999999854 589999999999999999


Q ss_pred             cCcceeEEeeCC--CCCeeEEEECCCC-CEEEE---ecccEEEEEeCCc-eEEEEeecCcccEEEEEECCCC-ceEEEee
Q psy12456         81 KLKNFKTLQLDP--NYEIRDLCFDQSG-TYMAV---AGTDVRVFLCKQW-QELAMFNEHTAMVTGVRFGTHA-HYLASSS  152 (162)
Q Consensus        81 ~~~~~~~~~~~~--~~~v~~~~~~~~~-~~~~~---~~~~~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s  152 (162)
                      ..++.......+  ..+...++|+++. .|+|+   .+.++.|.+.+.. .++.++++|...|++++|.|+. ..++|++
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence            877544332221  3567889999865 45544   3444666665543 5788899999999999999875 5889999


Q ss_pred             cCCeEEEeeC
Q psy12456        153 MDRTLKLYSL  162 (162)
Q Consensus       153 ~D~~i~iw~~  162 (162)
                      .|..+.+||+
T Consensus       308 DD~qaliWDl  317 (364)
T KOG0290|consen  308 DDCQALIWDL  317 (364)
T ss_pred             CcceEEEEec
Confidence            9999999996

>KOG0294|consensus

Probab=99.78  E-value=1.5e-17  Score=115.87  Aligned_cols=137  Identities=23%  Similarity=0.372  Sum_probs=114.0

Q ss_pred             EEEeeCCCcEEEEECCCC------------eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEee
Q psy12456         23 FGIGTSDSQVQIWDLKKQ------------KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        23 ~a~g~~dg~i~~wd~~~~------------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      +++|+....|.=+++.-.            .++..+.+|.++|+++|.  ++.++++|+.|-+|++||+++......+..
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~   81 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS   81 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence            456666655555555321            236677899999999998  589999999999999999998777776654


Q ss_pred             CCCCCeeEEEECCCCC--EEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         91 DPNYEIRDLCFDQSGT--YMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        91 ~~~~~v~~~~~~~~~~--~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                       |...|+++.|.+...  .+++|+.|  +.+|....|+.+..+..|+..|+.++..|.+++-.+.+.|+.+++|||
T Consensus        82 -HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL  156 (362)
T KOG0294|consen   82 -HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL  156 (362)
T ss_pred             -cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehh
Confidence             466799999998765  78888888  667778889999999999999999999999999999999999999986

>KOG1188|consensus

Probab=99.78  E-value=8e-18  Score=118.20  Aligned_cols=142  Identities=18%  Similarity=0.270  Sum_probs=114.8

Q ss_pred             cEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEEcccCcceeEEee--CCCCCe
Q psy12456         21 LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE--NGYYLATAADENCVKLWDLRKLKNFKTLQL--DPNYEI   96 (162)
Q Consensus        21 ~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~--~~~~~v   96 (162)
                      ..+|++.++|.|++||..+++.+..|+++...+..+.|..  ..+.+.+|+.||+|++||+|.......+..  ++..+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5699999999999999999999999999988888888876  467899999999999999997765444433  333456


Q ss_pred             eEEEECCCCCEEEEeccc------EEEEEeCCceE-EEE-eecCcccEEEEEECCC-CceEEEeecCCeEEEeeC
Q psy12456         97 RDLCFDQSGTYMAVAGTD------VRVFLCKQWQE-LAM-FNEHTAMVTGVRFGTH-AHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~-~~~-~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~iw~~  162 (162)
                      .++..+-.+..+++|...      +.+|+++.++. ++. ...|..-|+++.|.|. ..+|+|||-||-|.+||+
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            677766677888887532      56788877765 544 4679999999999985 579999999999999985

>KOG0771|consensus

Probab=99.78  E-value=9.8e-18  Score=120.23  Aligned_cols=149  Identities=21%  Similarity=0.423  Sum_probs=120.0

Q ss_pred             EEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEe--
Q psy12456         12 TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQ--   89 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~--   89 (162)
                      -+++++++|..+++|+.||++|+|+..+...+.....|...|.++.|+||++.|++-+.| ..++|+.++...+....  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            578999999999999999999999987777777788888999999999999999999999 79999987541110000  


Q ss_pred             ---------------------------------------eCC------------CCCeeEEEECCCCCEEEEeccc--EE
Q psy12456         90 ---------------------------------------LDP------------NYEIRDLCFDQSGTYMAVAGTD--VR  116 (162)
Q Consensus        90 ---------------------------------------~~~------------~~~v~~~~~~~~~~~~~~~~~~--~~  116 (162)
                                                             .+.            ...|.++..+++|++++.|+-+  +-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence                                                   000            1258899999999999999876  66


Q ss_pred             EEEeCCceEEEEe-ecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        117 VFLCKQWQELAMF-NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       117 i~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      |++..+.+.+... +.|...|+.+.|+|+.+++++.+.|..+.+-.
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            6666665555543 57999999999999999999988888776643

>KOG0307|consensus

Probab=99.77  E-value=1.3e-18  Score=137.15  Aligned_cols=159  Identities=21%  Similarity=0.336  Sum_probs=124.6

Q ss_pred             ccCCCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccC--CCCCEEEEEEcc-CCCEEEEEeCCCeEEEEE
Q psy12456          3 ASGAGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQL--DAGPIQALSFSE-NGYYLATAADENCVKLWD   78 (162)
Q Consensus         3 ~~~~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd   78 (162)
                      .-..|...|..++|++ ++++||+|..||+|.|||+.+-+.-..+..  ..+.|.+++|+. ..+.|++++.++...+||
T Consensus       111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD  190 (1049)
T KOG0307|consen  111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD  190 (1049)
T ss_pred             hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence            3457888999999999 555999999999999999987554444421  246799999987 467899999999999999


Q ss_pred             cccCcceeEEeeCCC-CCeeEEEECCCC-CEEEEeccc-----EEEEEeCC-ceEEEEeecCcccEEEEEECCCC-ceEE
Q psy12456         79 LRKLKNFKTLQLDPN-YEIRDLCFDQSG-TYMAVAGTD-----VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHA-HYLA  149 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~-~~~~~~~~~-----~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~-~~l~  149 (162)
                      +|+.+.+-.+..+.. ..+..+.|+|+. ..+++++.|     +.+|+++. ..+++.+++|...|.++.|++.. ++++
T Consensus       191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lll  270 (1049)
T KOG0307|consen  191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLL  270 (1049)
T ss_pred             ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhh
Confidence            998776655544332 346789999985 456666554     66777543 24677889999999999999765 8999


Q ss_pred             EeecCCeEEEee
Q psy12456        150 SSSMDRTLKLYS  161 (162)
Q Consensus       150 s~s~D~~i~iw~  161 (162)
                      |++.|+.|.+|+
T Consensus       271 SsgkD~~ii~wN  282 (1049)
T KOG0307|consen  271 SSGKDNRIICWN  282 (1049)
T ss_pred             cccCCCCeeEec
Confidence            999999999997

>KOG2096|consensus

Probab=99.77  E-value=1.4e-17  Score=116.51  Aligned_cols=151  Identities=21%  Similarity=0.368  Sum_probs=115.2

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECC---CC-----eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLK---KQ-----KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~---~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      ..-+-++++|+|+.+|+.+-.--|++|++-   .|     +.+..+++|...|.+.+|+|+...+++.+.||++++||..
T Consensus       229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             ccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            334668999999999999988889999873   12     3457788999999999999999999999999999999974


Q ss_pred             c-------CcceeEE--eeC-CCCCeeEEEECCCCCEEEEecc-cEEEEEeCCceEEEEe-ecCcccEEEEEECCCCceE
Q psy12456         81 K-------LKNFKTL--QLD-PNYEIRDLCFDQSGTYMAVAGT-DVRVFLCKQWQELAMF-NEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        81 ~-------~~~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l  148 (162)
                      -       .+.+...  ..+ .......++++|+|+.++.+.. +++++...+.+....+ ..|...|.+++|+++|+++
T Consensus       309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~  388 (420)
T KOG2096|consen  309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYI  388 (420)
T ss_pred             ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEE
Confidence            1       1111111  011 1122347899999999988764 5888877666555544 4699999999999999999


Q ss_pred             EEeecCCeEEEe
Q psy12456        149 ASSSMDRTLKLY  160 (162)
Q Consensus       149 ~s~s~D~~i~iw  160 (162)
                      +|++ |+.+++.
T Consensus       389 atcG-dr~vrv~  399 (420)
T KOG2096|consen  389 ATCG-DRYVRVI  399 (420)
T ss_pred             eeec-ceeeeee
Confidence            9886 7777764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.77  E-value=3.3e-16  Score=111.94  Aligned_cols=149  Identities=15%  Similarity=0.197  Sum_probs=110.0

Q ss_pred             cEEEEEeCCCCcEE-EEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEE-eCCCeEEEEEcccCcceeE
Q psy12456         10 TLTTAQLHPDGLIF-GIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATA-ADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        10 ~v~~~~~~~~g~~~-a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~d~~v~~wd~~~~~~~~~   87 (162)
                      .+..++++|+|+.+ ++++.++.+++||+++++.+..+..+.. +..++|+|+++.++++ ..|+.+++||+++.+.+..
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~  110 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE  110 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence            35679999999865 6777899999999999888777765543 4678999999877655 5689999999987665554


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecCcccEEEEEECCCCceEE-EeecCCeEEEeeC
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLA-SSSMDRTLKLYSL  162 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~D~~i~iw~~  162 (162)
                      +..  ...+..++|+|++.++++++.+   ..+++....+.+..... ......+.|+|++++++ ++..|+.|++||+
T Consensus       111 ~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~  186 (300)
T TIGR03866       111 IPV--GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDV  186 (300)
T ss_pred             eeC--CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEc
Confidence            442  2246789999999999888765   34445555544443332 23457789999999875 5556999999985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.77  E-value=1.8e-16  Score=107.42  Aligned_cols=145  Identities=21%  Similarity=0.429  Sum_probs=104.9

Q ss_pred             EEEEeCCCCcEEEEeeC----------CCcEEEEECCC-CeeeeeccCC-CCCEEEEEEccCCCEEEEE--eCCCeEEEE
Q psy12456         12 TTAQLHPDGLIFGIGTS----------DSQVQIWDLKK-QKNVTDFQLD-AGPIQALSFSENGYYLATA--ADENCVKLW   77 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~----------dg~i~~wd~~~-~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~--~~d~~v~~w   77 (162)
                      ..+.|+|+|.+|++-..          -|...||-++. +.++..+... .++|.+++|+|+++.++..  ..++.+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            34679999987765544          23456666633 3455555443 4589999999999987655  456789999


Q ss_pred             EcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc-----cEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEee
Q psy12456         78 DLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-----DVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        78 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                      |++ .+.+..+  . ...+..+.|+|+|+++++++.     ++.+|+.+..+.+.... |. .++.++|+|+|++|++++
T Consensus        89 d~~-~~~i~~~--~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen   89 DVK-GKKIFSF--G-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATAT  162 (194)
T ss_pred             cCc-ccEeEee--c-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEE
Confidence            996 3434433  2 335788999999999999863     37888888777776654 33 478999999999999876


Q ss_pred             c------CCeEEEeeC
Q psy12456        153 M------DRTLKLYSL  162 (162)
Q Consensus       153 ~------D~~i~iw~~  162 (162)
                      .      |..++||++
T Consensus       163 t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  163 TSPRLRVDNGFKIWSF  178 (194)
T ss_pred             eccceeccccEEEEEe
Confidence            3      788999974

>KOG0301|consensus

Probab=99.77  E-value=8.3e-18  Score=127.03  Aligned_cols=151  Identities=19%  Similarity=0.245  Sum_probs=124.3

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      +.+...+++.+-+ ++-.+.+|+.|+++.+|.+.+..++..+++|...|.+++...++. +++||.|.++++|-+.  +.
T Consensus        56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l  132 (745)
T KOG0301|consen   56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--EL  132 (745)
T ss_pred             CcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hh
Confidence            3333334355554 555688999999999999999999999999999999999888877 9999999999999875  34


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...++.| ...|..+..-|.. .+++|+.|..|..|+..+.++.|.+|...|.++++-|++ .|+|+++||.|++|++
T Consensus       133 ~~~l~gH-~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~  207 (745)
T KOG0301|consen  133 VYSLQGH-TASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL  207 (745)
T ss_pred             hcccCCc-chheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec
Confidence            4456654 4578999988888 667899997777777788899999999999999998765 4569999999999985

>KOG2055|consensus

Probab=99.76  E-value=1.7e-17  Score=120.51  Aligned_cols=153  Identities=24%  Similarity=0.369  Sum_probs=117.1

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCE--EEEEEccCCCEEEEEeCCCeEEEEEcccC---
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPI--QALSFSENGYYLATAADENCVKLWDLRKL---   82 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~d~~v~~wd~~~~---   82 (162)
                      ...|+.+.|+.+|+.+.+.+.+|.|.+||+++..+++.|... +.|  ++++.++++.||++|+..|.|.+||..+-   
T Consensus       344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s  422 (514)
T KOG2055|consen  344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS  422 (514)
T ss_pred             ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence            456889999999999999999999999999999999999743 344  45677789999999999999999997531   


Q ss_pred             ---cceeEEeeCCCCCeeEEEECCCCCEEEEeccc----EEEEEeCCceEEE---EeecCcccEEEEEECCCCceEEEee
Q psy12456         83 ---KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD----VRVFLCKQWQELA---MFNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        83 ---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                         +++..+ ..-...|.++.|+|+.+.+|.+|..    +++.-..+.....   ..+..-+.|++++|||.+.++|-|.
T Consensus       423 ~~PkPik~~-dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  423 TNPKPIKTV-DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             CCCCchhhh-hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence               111111 0112358999999999999999864    4444333322222   2244556799999999999999999


Q ss_pred             cCCeEEEeeC
Q psy12456        153 MDRTLKLYSL  162 (162)
Q Consensus       153 ~D~~i~iw~~  162 (162)
                      .+|.+.+|.|
T Consensus       502 e~grv~l~kL  511 (514)
T KOG2055|consen  502 EAGRVHLFKL  511 (514)
T ss_pred             CCCceeeEee
Confidence            9999999975

>KOG1036|consensus

Probab=99.76  E-value=2.2e-16  Score=109.66  Aligned_cols=152  Identities=13%  Similarity=0.221  Sum_probs=120.8

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+.....|+.+.|+|.+..|++++.||.+++||+........++ |..|+..++|.++ ..+++|+.|+.|+.+|+.+.+
T Consensus         9 ~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~   86 (323)
T KOG1036|consen    9 ENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN   86 (323)
T ss_pred             CCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCc
Confidence            45667889999999999999999999999999998876655565 6789999999875 578999999999999998766


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ...  ...|..+++|+++.+....+++|+.|  +++|+.+....+..++..+ .|.++..+  +..|+.|+.|+.+.+||
T Consensus        87 ~~~--igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~--g~~LvVg~~~r~v~iyD  161 (323)
T KOG1036|consen   87 EDQ--IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVS--GNRLVVGTSDRKVLIYD  161 (323)
T ss_pred             cee--eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEecc--CCEEEEeecCceEEEEE
Confidence            433  33466789999999988888899988  6777765433333333333 68887664  67788889999999999


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      |
T Consensus       162 L  162 (323)
T KOG1036|consen  162 L  162 (323)
T ss_pred             c
Confidence            6

>KOG2048|consensus

Probab=99.76  E-value=3.4e-16  Score=118.09  Aligned_cols=153  Identities=14%  Similarity=0.257  Sum_probs=123.3

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee-eeeccCC-CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN-VTDFQLD-AGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~-~~~~~~~-~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      ...|+++|++.+.+.+|++-.||.|.+|+++.+=. ...+.++ +..|.+++|+ ++..|.+.+.+|.|.-||+.+.+..
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~  103 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK  103 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence            35789999999999999999999999999987522 2334443 5789999999 5567889999999999999988876


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCc-eE---EEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW-QE---LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..+.. ....|.+++.+|.+..++.|..|..++++... +.   -..+...++.|.+++|+|++..+++|+.||-|++||
T Consensus       104 ~~~d~-~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd  182 (691)
T KOG2048|consen  104 YNIDS-NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD  182 (691)
T ss_pred             EEecC-CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence            66554 34579999999999999999888655554322 22   233566778899999999999999999999999999


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       183 ~  183 (691)
T KOG2048|consen  183 V  183 (691)
T ss_pred             c
Confidence            5

>KOG4328|consensus

Probab=99.76  E-value=2.4e-17  Score=119.55  Aligned_cols=155  Identities=19%  Similarity=0.369  Sum_probs=119.5

Q ss_pred             CCCcEEEEEeCCCC--cEEEEeeCCCcEEEEECCCC----eeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEc
Q psy12456          7 GGPTLTTAQLHPDG--LIFGIGTSDSQVQIWDLKKQ----KNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDL   79 (162)
Q Consensus         7 ~~~~v~~~~~~~~g--~~~a~g~~dg~i~~wd~~~~----~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~   79 (162)
                      ....|++++|||..  +++|+|...|+|-+||+++.    .-+..|..|.++|.+|.|+| +...+.+.|.||++++=|+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~  264 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF  264 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence            45679999999933  69999999999999999643    23567788999999999999 5567888999999998887


Q ss_pred             ccCcc--e-------------------------------------------eEEeeCCCCCeeEEEECCC-CCEEEEecc
Q psy12456         80 RKLKN--F-------------------------------------------KTLQLDPNYEIRDLCFDQS-GTYMAVAGT  113 (162)
Q Consensus        80 ~~~~~--~-------------------------------------------~~~~~~~~~~v~~~~~~~~-~~~~~~~~~  113 (162)
                      .+...  +                                           ..+.. +...|+.++++|. ..++++++.
T Consensus       265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h~kKI~sv~~NP~~p~~laT~s~  343 (498)
T KOG4328|consen  265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL-HKKKITSVALNPVCPWFLATASL  343 (498)
T ss_pred             cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-hhcccceeecCCCCchheeeccc
Confidence            53210  0                                           00011 1225889999996 567888888


Q ss_pred             c--EEEEEeCCce----EEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        114 D--VRVFLCKQWQ----ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       114 ~--~~i~~~~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      |  .+||+.+...    ++-..-.|...|.+..|||.+-.|++.+.|..|++||.
T Consensus       344 D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  344 DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            7  7899876532    23344579999999999999888999999999999983

>KOG1009|consensus

Probab=99.75  E-value=3.7e-17  Score=117.03  Aligned_cols=156  Identities=22%  Similarity=0.405  Sum_probs=128.6

Q ss_pred             CCCCcEEEEEeCCCCc-EEEEeeCCCcEEEEECCCCe---------eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEE
Q psy12456          6 AGGPTLTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQK---------NVTDFQLDAGPIQALSFSENGYYLATAADENCVK   75 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~---------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~   75 (162)
                      +...++..+.|++++. .+|+|+.|..|++|-+..+.         ....+..|...|+.+.|+|+|..|++|+.++.+.
T Consensus        11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~   90 (434)
T KOG1009|consen   11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF   90 (434)
T ss_pred             cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence            4677899999999777 99999999999999886542         2345677899999999999999999999999999


Q ss_pred             EEEcc--------c-----Cc--ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEE
Q psy12456         76 LWDLR--------K-----LK--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTG  138 (162)
Q Consensus        76 ~wd~~--------~-----~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~  138 (162)
                      +|-..        +     .+  .+.+.-..+...+-.++|+|++.++++++-|  +++|+...++....+.+|...|..
T Consensus        91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqg  170 (434)
T KOG1009|consen   91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQG  170 (434)
T ss_pred             EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccce
Confidence            99876        1     00  0111111244568889999999999999887  788888999999999999999999


Q ss_pred             EEECCCCceEEEeecCCeEEEee
Q psy12456        139 VRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       139 ~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ++|.|.++++++-+.|+..+.+.
T Consensus       171 vawDpl~qyv~s~s~dr~~~~~~  193 (434)
T KOG1009|consen  171 VAWDPLNQYVASKSSDRHPEGFS  193 (434)
T ss_pred             eecchhhhhhhhhccCcccceee
Confidence            99999999999999998655543

>KOG1007|consensus

Probab=99.75  E-value=6e-17  Score=111.95  Aligned_cols=150  Identities=20%  Similarity=0.388  Sum_probs=119.9

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee-eeecc-----CCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEEccc
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN-VTDFQ-----LDAGPIQALSFSE--NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~-~~~~~-----~~~~~v~~i~~~~--~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      .|+|+.|.|++.-+|+-. |..|.+|++..+.. +..+.     .+....++-+|+|  +++.+++.+ |+++..||+|+
T Consensus       125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT  202 (370)
T KOG1007|consen  125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRT  202 (370)
T ss_pred             ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccc
Confidence            799999999999888766 78999999987655 33332     2345677789999  788887755 68899999998


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCC-EEEEeccc--EEEEEeCC-ceEEEEeecCcccEEEEEECCC-CceEEEeecCCe
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTH-AHYLASSSMDRT  156 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~  156 (162)
                      ++......-.|...++++.|+|+.+ ++++++.|  +++|+++. ..++.++.+|+.+|++++|+|. .+++.++|.|..
T Consensus       203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~  282 (370)
T KOG1007|consen  203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA  282 (370)
T ss_pred             hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence            8776666555666799999999865 56667666  78888765 4578889999999999999975 567889999999


Q ss_pred             EEEee
Q psy12456        157 LKLYS  161 (162)
Q Consensus       157 i~iw~  161 (162)
                      |.+|.
T Consensus       283 V~Lsc  287 (370)
T KOG1007|consen  283 VNLSC  287 (370)
T ss_pred             eEEEe
Confidence            98874

>KOG0646|consensus

Probab=99.75  E-value=2e-16  Score=114.97  Aligned_cols=151  Identities=15%  Similarity=0.217  Sum_probs=126.7

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc-------
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRK-------   81 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~-------   81 (162)
                      .+|++++-+|.|.+++.|+..|.+.+|.+.+|+.+..+.+|-.+|+++.|+.|+.++++|+.||.|.+|++-.       
T Consensus        82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~  161 (476)
T KOG0646|consen   82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND  161 (476)
T ss_pred             cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC
Confidence            4689999999999999998999999999999999999999999999999999999999999999999999731       


Q ss_pred             --CcceeEEeeCCCCCeeEEEECCC--CCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCC
Q psy12456         82 --LKNFKTLQLDPNYEIRDLCFDQS--GTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        82 --~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                        .+....+.. |..+|+++...+.  ...+.++|.|  +++|+......+..+. ....+.++...|-.+.+-.|+.+|
T Consensus       162 ~~~~p~~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  162 HSVKPLHIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             CCccceeeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence              223344443 4567888877664  4678888888  8899887776666654 345689999999999999999999


Q ss_pred             eEEEee
Q psy12456        156 TLKLYS  161 (162)
Q Consensus       156 ~i~iw~  161 (162)
                      .|.+.+
T Consensus       240 ~I~~~~  245 (476)
T KOG0646|consen  240 KIFQNL  245 (476)
T ss_pred             eEEeee
Confidence            988765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.75  E-value=1.4e-15  Score=108.73  Aligned_cols=151  Identities=17%  Similarity=0.195  Sum_probs=109.6

Q ss_pred             cEEEEEeCCCCcEEEEeeCCC-cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEE-eCCCeEEEEEcccCcceeE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDS-QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATA-ADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg-~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~d~~v~~wd~~~~~~~~~   87 (162)
                      .+..++++|+|++++++..++ .+.+||.++++.+..+... .....++|+|++++|+.+ ..++.+.+||+++.+....
T Consensus       116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~  194 (300)
T TIGR03866       116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK  194 (300)
T ss_pred             CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence            457899999999999988875 4667899888776554433 345678999999988554 4689999999987765554


Q ss_pred             EeeCC------CCCeeEEEECCCCCEEEEec--c-cEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEe-ecCCeE
Q psy12456         88 LQLDP------NYEIRDLCFDQSGTYMAVAG--T-DVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASS-SMDRTL  157 (162)
Q Consensus        88 ~~~~~------~~~v~~~~~~~~~~~~~~~~--~-~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~D~~i  157 (162)
                      +..+.      ......++|+|+++++.++.  . .+.+|+..+++.+.... +...+.+++|+|++++|+++ +.++.|
T Consensus       195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i  273 (300)
T TIGR03866       195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDV  273 (300)
T ss_pred             eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeE
Confidence            43221      11234678999999754432  2 27778777666655443 34578999999999998876 568999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      ++||+
T Consensus       274 ~v~d~  278 (300)
T TIGR03866       274 SVIDV  278 (300)
T ss_pred             EEEEC
Confidence            99985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1539|consensus

Probab=99.74  E-value=9.6e-17  Score=123.49  Aligned_cols=154  Identities=19%  Similarity=0.290  Sum_probs=133.1

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .+++.+|+.++..--++++++++.+|.+++||+.++..+..+... .++..+..+.....++.+..|-.|+++|..+.+.
T Consensus       490 ~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv  568 (910)
T KOG1539|consen  490 PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV  568 (910)
T ss_pred             ccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence            478899999999999999999999999999999988877777743 4677888888888999999999999999998888


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecC-CeEEEee
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD-RTLKLYS  161 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D-~~i~iw~  161 (162)
                      ++.+..| ...+++++|||+|+++++++-|  +++|+..+...+-.+. -..+++.++|||++.+||++..| .-|.+|.
T Consensus       569 vR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  569 VREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             hHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            8888764 4579999999999999999987  8889887777765554 45678999999999999999998 5799984

>KOG1063|consensus

Probab=99.74  E-value=1.1e-16  Score=121.11  Aligned_cols=154  Identities=18%  Similarity=0.309  Sum_probs=119.5

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCc-----EEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQ-----VQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~-----i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      ||.-|.+++.+|+|+++|+++....     |+||+..+=..+..++.|.-.|+.++||||+++|++.+.|.++.+|....
T Consensus       524 HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~  603 (764)
T KOG1063|consen  524 HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQE  603 (764)
T ss_pred             CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeec
Confidence            6788999999999999999998765     88999877677778999999999999999999999999999999999853


Q ss_pred             Ccc----eeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeC--Cc--eEEEE--eecCcccEEEEEECCC----C-c
Q psy12456         82 LKN----FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK--QW--QELAM--FNEHTAMVTGVRFGTH----A-H  146 (162)
Q Consensus        82 ~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~--~~--~~~~~--~~~h~~~v~~~~~s~~----~-~  146 (162)
                      ...    +...+. |.--|.++.|+|++++++++|.|.+|..+.  ..  +.+..  ...+...|++++|.|-    . .
T Consensus       604 ~~~~e~~fa~~k~-HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~  682 (764)
T KOG1063|consen  604 DIKDEFRFACLKA-HTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGD  682 (764)
T ss_pred             ccchhhhhccccc-cceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccc
Confidence            221    111223 333589999999999999999995544432  22  22322  3457889999998752    2 2


Q ss_pred             eEEEeecCCeEEEee
Q psy12456        147 YLASSSMDRTLKLYS  161 (162)
Q Consensus       147 ~l~s~s~D~~i~iw~  161 (162)
                      .++.|-..|.|.+|.
T Consensus       683 ~vavGle~GeI~l~~  697 (764)
T KOG1063|consen  683 VVAVGLEKGEIVLWR  697 (764)
T ss_pred             eEEEEecccEEEEEe
Confidence            566777889999996

>KOG1007|consensus

Probab=99.74  E-value=1.5e-16  Score=110.03  Aligned_cols=153  Identities=25%  Similarity=0.383  Sum_probs=117.4

Q ss_pred             CCCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCCeeeeecc-CCCCCEEEEEEccCC-CEEEEEeCCCeEEEEEcccC
Q psy12456          7 GGPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQKNVTDFQ-LDAGPIQALSFSENG-YYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         7 ~~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~~~~~-~~l~s~~~d~~v~~wd~~~~   82 (162)
                      +...-++.+|+|  +|+.+++.+ |++++.||+|+.+....+. +|...|+.+.|+|+. .+|++|+.|+.|++||.|+.
T Consensus       169 ~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  169 MRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             ccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence            356678889998  898887655 7899999999988777764 788899999999974 57899999999999999876


Q ss_pred             cc-eeEEeeCCCCCeeEEEECCC-CCEEEEecccEEEEEe-CC------------------------------ceEEEEe
Q psy12456         83 KN-FKTLQLDPNYEIRDLCFDQS-GTYMAVAGTDVRVFLC-KQ------------------------------WQELAMF  129 (162)
Q Consensus        83 ~~-~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~~-~~------------------------------~~~~~~~  129 (162)
                      +. +..+.. |..-+.++.|+|. .+++++++.|.+|... ..                              ...+.++
T Consensus       248 k~pv~el~~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty  326 (370)
T KOG1007|consen  248 KFPVQELPG-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY  326 (370)
T ss_pred             CccccccCC-CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence            53 444443 4456999999995 6788899988554431 00                              0124567


Q ss_pred             ecCcccEEEEEECC-CCceEEEeecCCeEEEee
Q psy12456        130 NEHTAMVTGVRFGT-HAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       130 ~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iw~  161 (162)
                      ..|...|.+++||. +.=.||+-|.||.+.|=+
T Consensus       327 dehEDSVY~~aWSsadPWiFASLSYDGRviIs~  359 (370)
T KOG1007|consen  327 DEHEDSVYALAWSSADPWIFASLSYDGRVIISS  359 (370)
T ss_pred             cccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence            88999999999984 455668889999887643

>KOG0300|consensus

Probab=99.74  E-value=3.2e-17  Score=114.84  Aligned_cols=156  Identities=17%  Similarity=0.293  Sum_probs=131.8

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc----
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRK----   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~----   81 (162)
                      -|..+|..++......++++++.|.+.+||.+++++++.++.+|.+.|.+|.|++.+.++++++.|++-.+|...-    
T Consensus       146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v  225 (481)
T KOG0300|consen  146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV  225 (481)
T ss_pred             ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence            4667788777777777999999999999999999999999999999999999999999999999999999998310    


Q ss_pred             Ccc------------------------------------eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc
Q psy12456         82 LKN------------------------------------FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW  123 (162)
Q Consensus        82 ~~~------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~  123 (162)
                      .+.                                    +..+.. +...|.++.|-..|+.+++++.|  ..+|+..+.
T Consensus       226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg  304 (481)
T KOG0300|consen  226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETG  304 (481)
T ss_pred             CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccC
Confidence            000                                    001111 23346677788888899999988  678999999


Q ss_pred             eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       124 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +.+..+.+|....++++-.|..+++++.+.|-+.++||+
T Consensus       305 e~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF  343 (481)
T KOG0300|consen  305 EVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF  343 (481)
T ss_pred             ceeccccCcchhccccccCCcceEEEEeccCceeEeccc
Confidence            999999999999999999999999999999999999995

>KOG4283|consensus

Probab=99.73  E-value=1.9e-16  Score=109.91  Aligned_cols=156  Identities=20%  Similarity=0.346  Sum_probs=127.1

Q ss_pred             CCCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccC---CCEEEEEeCCCeEEEEEcc
Q psy12456          5 GAGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSEN---GYYLATAADENCVKLWDLR   80 (162)
Q Consensus         5 ~~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~d~~v~~wd~~   80 (162)
                      ..|..+|+.+.|.| |.-+|.+++-|.++++||.++-+....|+.+ +.|.+-+++|-   ..++++|..|-.|++.|+.
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            45788999999999 7779999999999999999998888888764 57888888883   3477888888899999999


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEE-EEeccc--EEEEEeCCc-eE--------------EEEeecCcccEEEEEEC
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYM-AVAGTD--VRVFLCKQW-QE--------------LAMFNEHTAMVTGVRFG  142 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~--~~i~~~~~~-~~--------------~~~~~~h~~~v~~~~~s  142 (162)
                      .......++.| ...|.++.|+|..+++ ++|+.|  +++|+.+.- .+              ++.-..|.+.|.+++|+
T Consensus       177 SGs~sH~LsGH-r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t  255 (397)
T KOG4283|consen  177 SGSFSHTLSGH-RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT  255 (397)
T ss_pred             CCcceeeeccc-cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence            88877888775 4569999999988765 456666  788886542 11              12233588899999999


Q ss_pred             CCCceEEEeecCCeEEEeeC
Q psy12456        143 THAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       143 ~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .++.++++.+.|..+++|+.
T Consensus       256 Sd~~~l~~~gtd~r~r~wn~  275 (397)
T KOG4283|consen  256 SDARYLASCGTDDRIRVWNM  275 (397)
T ss_pred             ccchhhhhccCccceEEeec
Confidence            99999999999999999974

>KOG2445|consensus

Probab=99.73  E-value=8.5e-16  Score=106.97  Aligned_cols=156  Identities=21%  Similarity=0.329  Sum_probs=118.5

Q ss_pred             CCCCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCC---------eeeeeccCCCCCEEEEEEcc--CCCEEEEEeCCC
Q psy12456          6 AGGPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQ---------KNVTDFQLDAGPIQALSFSE--NGYYLATAADEN   72 (162)
Q Consensus         6 ~~~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~---------~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~d~   72 (162)
                      +|+.+|-.+.|.+  -|+.+|+.+.|++++||+=...         ....++......|..|+|.|  -|-.|++++.||
T Consensus        57 ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG  136 (361)
T KOG2445|consen   57 AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG  136 (361)
T ss_pred             ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc
Confidence            5777888888864  8999999999999999974211         12334555567899999999  478999999999


Q ss_pred             eEEEEEcccC------cce----------------------------------------------eEEee----------
Q psy12456         73 CVKLWDLRKL------KNF----------------------------------------------KTLQL----------   90 (162)
Q Consensus        73 ~v~~wd~~~~------~~~----------------------------------------------~~~~~----------   90 (162)
                      ++|+|+.-..      ...                                              ..++.          
T Consensus       137 ~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv  216 (361)
T KOG2445|consen  137 ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV  216 (361)
T ss_pred             EEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee
Confidence            9999995211      000                                              00000          


Q ss_pred             ----CCCCCeeEEEECCC----CCEEEEeccc-EEEEEeCC--------------------ceEEEEeecCcccEEEEEE
Q psy12456         91 ----DPNYEIRDLCFDQS----GTYMAVAGTD-VRVFLCKQ--------------------WQELAMFNEHTAMVTGVRF  141 (162)
Q Consensus        91 ----~~~~~v~~~~~~~~----~~~~~~~~~~-~~i~~~~~--------------------~~~~~~~~~h~~~v~~~~~  141 (162)
                          .+..+|++++|.|+    -..+|++..| ++||..+.                    -+.+.++.+|...|+.+.|
T Consensus       217 a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w  296 (361)
T KOG2445|consen  217 AELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW  296 (361)
T ss_pred             hhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence                12336899999996    3678899888 88887642                    1345668899999999999


Q ss_pred             CCCCceEEEeecCCeEEEee
Q psy12456        142 GTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       142 s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +-.|..|++.|.||+||+|.
T Consensus       297 NmtGtiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  297 NMTGTILSSTGDDGCVRLWK  316 (361)
T ss_pred             eeeeeEEeecCCCceeeehh
Confidence            99999999999999999995

>KOG4378|consensus

Probab=99.73  E-value=3.3e-16  Score=115.07  Aligned_cols=156  Identities=18%  Similarity=0.295  Sum_probs=125.2

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCC-CCCEEEEEEccCCC-EEEEEeCCCeEEEEEcccCcc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLD-AGPIQALSFSENGY-YLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      |...|+++.++....|+|+++..|.|.|..+.++.....|+.. ...|+-+.++|..+ +|.+++.+|.|.+||...+..
T Consensus       120 h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp  199 (673)
T KOG4378|consen  120 HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP  199 (673)
T ss_pred             CcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc
Confidence            4578999999999999999999999999999998888888755 45677899999654 677789999999999987666


Q ss_pred             eeEEeeCCCCCeeEEEECCC-CCEEEEecccEEEEEeCCceE-EEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQS-GTYMAVAGTDVRVFLCKQWQE-LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...+...|..+.+.+||+|. ..++++.+.|.+|+.++.... ...--....+.+.++|+++|.+|+.|...|.|..||+
T Consensus       200 ~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  200 IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence            55554456678899999995 567788889977776654321 1111224557899999999999999999999999986

>KOG2106|consensus

Probab=99.73  E-value=9e-16  Score=112.89  Aligned_cols=149  Identities=16%  Similarity=0.250  Sum_probs=118.6

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      |+...-.++.||+.+++++.+.|+++++|+  ..+++.+... ..+..++.|+|.| .++.|...|...+.|..+...+.
T Consensus       367 h~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~  442 (626)
T KOG2106|consen  367 HGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT  442 (626)
T ss_pred             cccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEE
Confidence            344777899999999999999999999998  5566655443 3578899999999 99999999999999998855444


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeC--C-c-eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK--Q-W-QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~--~-~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ... . ..++.++.|+|+|.++|+|+.|..|+.++  . . +..+.-..|..+|+++.||+|++++.+-+.|..|-+|.
T Consensus       443 ~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  443 IHT-D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEe-c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence            333 2 55799999999999999999997666543  2 1 12222223448999999999999999999999999994

>KOG0303|consensus

Probab=99.73  E-value=1.9e-16  Score=113.31  Aligned_cols=156  Identities=15%  Similarity=0.288  Sum_probs=126.2

Q ss_pred             cCCCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC-------eeeeeccCCCCCEEEEEEccC-CCEEEEEeCCCeE
Q psy12456          4 SGAGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ-------KNVTDFQLDAGPIQALSFSEN-GYYLATAADENCV   74 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d~~v   74 (162)
                      ...|..+|-.++|+| +...+|+|+.|-+|.||..-.+       +++..+.+|...|.-++|+|. .+.|++++.|.+|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            346788899999999 7889999999999999998653       567788899999999999994 6789999999999


Q ss_pred             EEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCccc-EEEEEECCCCceEEEe
Q psy12456         75 KLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAM-VTGVRFGTHAHYLASS  151 (162)
Q Consensus        75 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~  151 (162)
                      .+||+.+.+.+-++.  |...|.+++|+.+|.++++...|  ++||+.++.+.+.+-..|.+. -..+-|-.++..+.||
T Consensus       157 ~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG  234 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG  234 (472)
T ss_pred             EEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence            999999888666554  55579999999999999999988  677777788888777777652 2334466677755554


Q ss_pred             e---cCCeEEEee
Q psy12456        152 S---MDRTLKLYS  161 (162)
Q Consensus       152 s---~D~~i~iw~  161 (162)
                      -   .++.+-+||
T Consensus       235 fsr~seRq~aLwd  247 (472)
T KOG0303|consen  235 FSRMSERQIALWD  247 (472)
T ss_pred             cccccccceeccC
Confidence            2   478888887

>KOG1523|consensus

Probab=99.71  E-value=8.6e-16  Score=107.39  Aligned_cols=154  Identities=14%  Similarity=0.203  Sum_probs=123.3

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe---eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc---
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK---NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR---   80 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~---   80 (162)
                      .-.+|++-+|++|+..+|++-.+..+.||.....+   +.++++.|+..|+.|.|+|..+.|++++.|..-.+|.+.   
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            45789999999999999999999999999987764   678889999999999999999999999999999999983   


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC---c-eEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ---W-QELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~---~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      +++....+. ......+++.|+|.+..+++|+..  +.|+.+..   | ..-..-..+...|++++|.|++=+++.||.|
T Consensus        89 ~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   89 TWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             eeccceeEE-EeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence            233322222 123358999999999999999887  55555432   1 1111224466779999999999999999999


Q ss_pred             CeEEEee
Q psy12456        155 RTLKLYS  161 (162)
Q Consensus       155 ~~i~iw~  161 (162)
                      +..|++.
T Consensus       168 ~k~rVfS  174 (361)
T KOG1523|consen  168 GKCRVFS  174 (361)
T ss_pred             cceeEEE
Confidence            9999985

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.70  E-value=1.3e-14  Score=106.35  Aligned_cols=155  Identities=27%  Similarity=0.542  Sum_probs=123.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeC-CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY-YLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+...|..+.++|++.++++++. |+.+++|+...++.+..+..|...|..++|+|++. .+++++.|+.+++||.+...
T Consensus       153 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~  232 (466)
T COG2319         153 GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK  232 (466)
T ss_pred             cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc
Confidence            46677889999999998988886 99999999998888889988999999999999988 55555999999999987555


Q ss_pred             cee-EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceE-EEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         84 NFK-TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQE-LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        84 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      ... .+..+.. .. ...|+|++.++++++.+  +++|+...... +..+..|...|..+.|.|++..+++++.|+.+++
T Consensus       233 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~  310 (466)
T COG2319         233 LLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL  310 (466)
T ss_pred             EEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEE
Confidence            444 3443333 22 22899999888877776  77777654433 4444678999999999998888888999988999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      |++
T Consensus       311 ~~~  313 (466)
T COG2319         311 WDL  313 (466)
T ss_pred             EEc
Confidence            974

>KOG1063|consensus

Probab=99.69  E-value=9e-16  Score=116.25  Aligned_cols=157  Identities=18%  Similarity=0.281  Sum_probs=115.0

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-ee---eeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-NV---TDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-~~---~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      -|...||.++|+|||++|++.+.|.++.+|+...+. ..   ...+.|..-|.+++|+|++.+++|+|+|++|++|...+
T Consensus       570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~  649 (764)
T KOG1063|consen  570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD  649 (764)
T ss_pred             ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence            467889999999999999999999999999875432 11   23567888899999999999999999999999999876


Q ss_pred             C--cceeEE-eeCCCCCeeEEEECCC-----CCEEEEecccEEEEEeCCc--e------------EEEEeecCcccEEEE
Q psy12456         82 L--KNFKTL-QLDPNYEIRDLCFDQS-----GTYMAVAGTDVRVFLCKQW--Q------------ELAMFNEHTAMVTGV  139 (162)
Q Consensus        82 ~--~~~~~~-~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~i~~~~~~--~------------~~~~~~~h~~~v~~~  139 (162)
                      .  +.+..+ .......++.+++.|-     +..+++|-....|+.++..  +            .......|...|+.+
T Consensus       650 ~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl  729 (764)
T KOG1063|consen  650 LRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRL  729 (764)
T ss_pred             chhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhhee
Confidence            5  333331 1223456888888762     2356666555555544321  0            112234577889999


Q ss_pred             EECCCC----------ceEEEeecCCeEEEeeC
Q psy12456        140 RFGTHA----------HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       140 ~~s~~~----------~~l~s~s~D~~i~iw~~  162 (162)
                      .|+|..          ..|+.|+.|.++|++++
T Consensus       730 ~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv  762 (764)
T KOG1063|consen  730 LWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNV  762 (764)
T ss_pred             EeccccccccccccceeEEeeecccceeEEeec
Confidence            999752          35699999999999974

>KOG2055|consensus

Probab=99.68  E-value=3e-15  Score=108.92  Aligned_cols=156  Identities=19%  Similarity=0.316  Sum_probs=123.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC--CeeeeeccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcccC
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK--QKNVTDFQLDAGPIQALSFSENGY-YLATAADENCVKLWDLRKL   82 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~--~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~~   82 (162)
                      ....+|+++.|||.-.++.+++.||.++||-++.  ...++.+.....||....|.|+|+ .+++++.-..+..||+.+.
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            3456899999999999999999999999998864  345666666778999999999999 8999999999999999764


Q ss_pred             cc--eeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEE
Q psy12456         83 KN--FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        83 ~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      +.  +..........+.....+|++.+++..+....|..+  ++.+-+..++ -.+.|..+.|+.+++.|...+.+|.|.
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~  369 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY  369 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence            42  222222223357788999999999999988766654  3344444443 345699999999999999999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      +||+
T Consensus       370 v~nl  373 (514)
T KOG2055|consen  370 VWNL  373 (514)
T ss_pred             EEec
Confidence            9996

>KOG1034|consensus

Probab=99.68  E-value=1.9e-16  Score=110.95  Aligned_cols=155  Identities=17%  Similarity=0.272  Sum_probs=110.8

Q ss_pred             CCCCcEEEEEeCCCC-cEEEEeeCCCcEEEEECCCCeeeeecc---CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHPDG-LIFGIGTSDSQVQIWDLKKQKNVTDFQ---LDAGPIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g-~~~a~g~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      .||..|+.+.++|+. +++++++.|..||+||+++..++..|.   +|.+.|.++.|++++.++++++.|.++++|++..
T Consensus       133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            578899999999955 689999999999999999999988774   6999999999999999999999999999999973


Q ss_pred             CcceeE------Ee---------------------eCCCCCeeEEEECCCCCEEEEecccEEEEEeCCce----------
Q psy12456         82 LKNFKT------LQ---------------------LDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQ----------  124 (162)
Q Consensus        82 ~~~~~~------~~---------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------  124 (162)
                      .+....      +.                     --|...|.|+.|-  |.++++=+.+..|.-|+.++          
T Consensus       213 ~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp  290 (385)
T KOG1034|consen  213 KEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKP  290 (385)
T ss_pred             hHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCC
Confidence            211000      00                     0012234444443  46677766554444443311          


Q ss_pred             ------EEEEeecCcccEEEEEE--CCCCceEEEeecCCeEEEeeC
Q psy12456        125 ------ELAMFNEHTAMVTGVRF--GTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       125 ------~~~~~~~h~~~v~~~~~--s~~~~~l~s~s~D~~i~iw~~  162 (162)
                            .+.+++-..-.++=++|  .|.+++||.|..-|.|.+|||
T Consensus       291 ~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL  336 (385)
T KOG1034|consen  291 PESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL  336 (385)
T ss_pred             CccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence                  12233333334555555  577899999999999999996

>KOG0303|consensus

Probab=99.67  E-value=5.1e-15  Score=106.10  Aligned_cols=153  Identities=14%  Similarity=0.221  Sum_probs=114.6

Q ss_pred             CCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          8 GPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         8 ~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      .-.|.-++||| ..+.|++++.|.+|.+||+.+++.+-+++ |...|.+++|+.||.+|++.+.|+.|++||.++.+.+.
T Consensus       131 ~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~  209 (472)
T KOG0303|consen  131 QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS  209 (472)
T ss_pred             ceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence            34577899999 67789999999999999999999888888 88999999999999999999999999999999988776


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCc---eEEEEeecCcccEEEEEECCCCceE-EEeecCCeE
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQW---QELAMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTL  157 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i  157 (162)
                      .-..|.......+-|-.++.++.+|.+.     +-+|+-...   -.+.++...++ |.=--|.|+.+.+ +.|-.|+.|
T Consensus       210 e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~GKGD~~I  288 (472)
T KOG0303|consen  210 EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCGKGDSSI  288 (472)
T ss_pred             ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEecCCcce
Confidence            6555544444556677888876666543     345543222   12333444443 3333357777765 567789999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      |.|.+
T Consensus       289 RYyEi  293 (472)
T KOG0303|consen  289 RYFEI  293 (472)
T ss_pred             EEEEe
Confidence            99864

>KOG2110|consensus

Probab=99.67  E-value=3.6e-14  Score=100.89  Aligned_cols=149  Identities=23%  Similarity=0.365  Sum_probs=115.9

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC---CCCCEEEEEEccCCCEEEEEe--CCCeEEEEEcccCcc
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL---DAGPIQALSFSENGYYLATAA--DENCVKLWDLRKLKN   84 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~--~d~~v~~wd~~~~~~   84 (162)
                      .|-++.++.+.  |++.-. ..|.|||++..+.+.++..   +...+.++++++.+.+++.-+  ..|.|.+||..+.+.
T Consensus        89 ~IL~VrmNr~R--LvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~  165 (391)
T KOG2110|consen   89 SILAVRMNRKR--LVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP  165 (391)
T ss_pred             ceEEEEEccce--EEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee
Confidence            45566666543  444443 4499999999999888763   333455556666666887654  357899999999888


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecCcc--cEEEEEECCCCceEEEeecCCeEEE
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHTA--MVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      +..+.. |+.++.+++|+++|.++|+++..   +||+....++.+.+|..-..  .|.+++|+|++++|+..|..++|++
T Consensus       166 v~~I~a-H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHi  244 (391)
T KOG2110|consen  166 VNTINA-HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHI  244 (391)
T ss_pred             eeEEEe-cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEE
Confidence            888875 56689999999999999999976   78888888888888876554  4678999999999999999999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      |.|
T Consensus       245 FKL  247 (391)
T KOG2110|consen  245 FKL  247 (391)
T ss_pred             EEe
Confidence            975

>KOG0649|consensus

Probab=99.67  E-value=9.1e-15  Score=99.23  Aligned_cols=147  Identities=19%  Similarity=0.237  Sum_probs=109.7

Q ss_pred             EEEeCCCCcEEEEeeCCCcEEEEECCC----------CeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456         13 TAQLHPDGLIFGIGTSDSQVQIWDLKK----------QKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~i~~wd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      +-+++|-+++|++|..+|.|-++.+++          +.++-.+++|++||..++|..  .+|++|+ ||.|+-|..+..
T Consensus        15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~E~   91 (325)
T KOG0649|consen   15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWNEE   91 (325)
T ss_pred             HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeeehhh
Confidence            346899999999999999999998863          234566789999999999973  3566665 599999887543


Q ss_pred             cc-e---------eEEe--eCCCCCeeEEEECCCCCEEEEecccE--EEEEeCCceEEEEeecCcccEEEEEECCCCceE
Q psy12456         83 KN-F---------KTLQ--LDPNYEIRDLCFDQSGTYMAVAGTDV--RVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        83 ~~-~---------~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  148 (162)
                      .. .         ..++  .-+-.+|+.+.+.|...-++.++.|.  .-++..++...+++++|+.+|.++.--.....+
T Consensus        92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qi  171 (325)
T KOG0649|consen   92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQI  171 (325)
T ss_pred             hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcce
Confidence            22 0         0000  01123588899998877777777774  455677788888899999999999884444556


Q ss_pred             EEeecCCeEEEeeC
Q psy12456        149 ASSSMDRTLKLYSL  162 (162)
Q Consensus       149 ~s~s~D~~i~iw~~  162 (162)
                      .||+.||++|+||+
T Consensus       172 lsG~EDGtvRvWd~  185 (325)
T KOG0649|consen  172 LSGAEDGTVRVWDT  185 (325)
T ss_pred             eecCCCccEEEEec
Confidence            79999999999985

>KOG2048|consensus

Probab=99.66  E-value=3.5e-14  Score=107.44  Aligned_cols=156  Identities=19%  Similarity=0.303  Sum_probs=123.1

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .|.....|.+++|.+.+++| +.+.+|.|.-||+.+.++...+..-.++|.+|+.+|.+..++.|+.||.+...+....+
T Consensus        65 ~g~~drsIE~L~W~e~~RLF-S~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~  143 (691)
T KOG2048|consen   65 HGPEDRSIESLAWAEGGRLF-SSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK  143 (691)
T ss_pred             ecCCCCceeeEEEccCCeEE-eecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce
Confidence            45777889999999877766 55668999999999999999999888999999999999999999999977777776544


Q ss_pred             ceeEEee-CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEE----ee---c-CcccEEEEEECCCCceEEEee
Q psy12456         84 NFKTLQL-DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAM----FN---E-HTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        84 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~----~~---~-h~~~v~~~~~s~~~~~l~s~s  152 (162)
                      ......+ .....+.+++|+|++..++.|+.|  +++|+....+.+..    +.   . ..--|+++.|-.++ .+++|.
T Consensus       144 I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgD  222 (691)
T KOG2048|consen  144 ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGD  222 (691)
T ss_pred             EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEec
Confidence            3222222 234679999999999999999988  68888877665541    11   1 33458888887544 678999


Q ss_pred             cCCeEEEee
Q psy12456        153 MDRTLKLYS  161 (162)
Q Consensus       153 ~D~~i~iw~  161 (162)
                      ..|+|++||
T Consensus       223 S~G~V~FWd  231 (691)
T KOG2048|consen  223 SAGTVTFWD  231 (691)
T ss_pred             CCceEEEEc
Confidence            999999998

>KOG0650|consensus

Probab=99.66  E-value=1.1e-15  Score=114.32  Aligned_cols=155  Identities=23%  Similarity=0.317  Sum_probs=126.2

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC-c
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL-K   83 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~-~   83 (162)
                      ...+..|.++.|||...+|.+++. ..|||||+.++..+..+......|..++++|.|..|+.++.|+.+..+|+.-. +
T Consensus       563 ~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk  641 (733)
T KOG0650|consen  563 RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK  641 (733)
T ss_pred             hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc
Confidence            456778999999999999988876 67999999998888777665567999999999999999999999999999643 3


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEecccE--EEEEe---CC------ceEEEEeecCccc----EEEEEECCCCceE
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDV--RVFLC---KQ------WQELAMFNEHTAM----VTGVRFGTHAHYL  148 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~~~---~~------~~~~~~~~~h~~~----v~~~~~s~~~~~l  148 (162)
                      ..+++..| ...+++++|++.-.++++|+.|.  .|+.-   +.      ..+++.+.+|...    |.++.|.|...||
T Consensus       642 Pyk~lr~H-~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWL  720 (733)
T KOG0650|consen  642 PYKTLRLH-EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWL  720 (733)
T ss_pred             hhHHhhhh-hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceE
Confidence            44455554 44699999999999999999873  33321   11      2467778888876    9999999999999


Q ss_pred             EEeecCCeEEEee
Q psy12456        149 ASSSMDRTLKLYS  161 (162)
Q Consensus       149 ~s~s~D~~i~iw~  161 (162)
                      .+++.|++|++|.
T Consensus       721 fsAGAd~tirlfT  733 (733)
T KOG0650|consen  721 FSAGADGTIRLFT  733 (733)
T ss_pred             EecCCCceEEeeC
Confidence            9999999999983

>KOG2106|consensus

Probab=99.66  E-value=5.4e-14  Score=103.70  Aligned_cols=153  Identities=19%  Similarity=0.346  Sum_probs=117.9

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc-cee
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK-NFK   86 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~-~~~   86 (162)
                      +.++.+++|||.| .+|.|+..|...+.|.++...+..-+. ..+++.++|+|+|.+|+.|+.|+.|.+|.+.... ...
T Consensus       407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~  484 (626)
T KOG2106|consen  407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS  484 (626)
T ss_pred             cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE
Confidence            4577899999999 999999999999999988666554444 7899999999999999999999999999985432 222


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCC-------------c------------------------------
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ-------------W------------------------------  123 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~-------------~------------------------------  123 (162)
                      .....+..+|..+.|++|++++.+-+.|..+..|..             |                              
T Consensus       485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~  564 (626)
T KOG2106|consen  485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEK  564 (626)
T ss_pred             EeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhh
Confidence            333333468999999999999999887744332210             0                              


Q ss_pred             ----------------------eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        124 ----------------------QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       124 ----------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                                            .+..++.+|++.|++++|.-+.+.+.+.+.|..|-.|++
T Consensus       565 ~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  565 LLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             hhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence                                  011344568889999999877777777779999999985

>KOG1445|consensus

Probab=99.66  E-value=6.4e-16  Score=116.68  Aligned_cols=155  Identities=18%  Similarity=0.319  Sum_probs=118.2

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC-------eeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEE
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ-------KNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKL   76 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~   76 (162)
                      ..+..|+.+.|.| |...||+++.||.|++|-+..+       ++...+++|...|.++.|+| -...|++++.|.+|++
T Consensus       625 ~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~l  704 (1012)
T KOG1445|consen  625 FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIEL  704 (1012)
T ss_pred             ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeee
Confidence            4677899999999 8889999999999999998754       45567788999999999999 4668999999999999


Q ss_pred             EEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCC--c-eEEEEeecCcc-cEEEEEECCCCceEEEee
Q psy12456         77 WDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ--W-QELAMFNEHTA-MVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        77 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~--~-~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s  152 (162)
                      ||+++.+...++..|.. .|..++|+|+|+.+++...|.++..++.  . +++.+-++-.+ .--.+.|.-++++++..+
T Consensus       705 WDl~~~~~~~~l~gHtd-qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G  783 (1012)
T KOG1445|consen  705 WDLANAKLYSRLVGHTD-QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG  783 (1012)
T ss_pred             eehhhhhhhheeccCcC-ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence            99998887777776554 6999999999999999998855554432  2 33433222211 123466777888887776


Q ss_pred             cCC----eEEEee
Q psy12456        153 MDR----TLKLYS  161 (162)
Q Consensus       153 ~D~----~i~iw~  161 (162)
                      .|.    .|.+||
T Consensus       784 fdk~SeRQv~~Y~  796 (1012)
T KOG1445|consen  784 FDKSSERQVQMYD  796 (1012)
T ss_pred             ccccchhhhhhhh
Confidence            663    455554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.65  E-value=2.2e-14  Score=97.19  Aligned_cols=99  Identities=27%  Similarity=0.551  Sum_probs=80.0

Q ss_pred             CcEEEEEeCCCCcEEEE--eeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC---CCeEEEEEcccCc
Q psy12456          9 PTLTTAQLHPDGLIFGI--GTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD---ENCVKLWDLRKLK   83 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~--g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---d~~v~~wd~~~~~   83 (162)
                      .+|.+++|+|+|+.||+  |..+..+.+||++ .+.+..+.  ..++..|.|+|+|++|++++.   .|.|.+||.++.+
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~  136 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK  136 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence            45999999999998755  4467899999996 67777775  457788999999999999874   3679999999777


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEecc
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT  113 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  113 (162)
                      .+....  +. .+..++|+|+|++++++..
T Consensus       137 ~i~~~~--~~-~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  137 KISTFE--HS-DATDVEWSPDGRYLATATT  163 (194)
T ss_pred             Eeeccc--cC-cEEEEEEcCCCCEEEEEEe
Confidence            665543  22 4789999999999999865

>KOG0270|consensus

Probab=99.65  E-value=2.6e-15  Score=108.69  Aligned_cols=144  Identities=22%  Similarity=0.311  Sum_probs=107.1

Q ss_pred             CCCcEEEEeeCCCcEEEEECCCCe---eeee------------------ccCCCCCEEEEEEccC-CCEEEEEeCCCeEE
Q psy12456         18 PDGLIFGIGTSDSQVQIWDLKKQK---NVTD------------------FQLDAGPIQALSFSEN-GYYLATAADENCVK   75 (162)
Q Consensus        18 ~~g~~~a~g~~dg~i~~wd~~~~~---~~~~------------------~~~~~~~v~~i~~~~~-~~~l~s~~~d~~v~   75 (162)
                      ..|+|+|.|+.|-.|.|||+.-..   |...                  -..|...|.+++|+.. .+.|++||.|.+|+
T Consensus       190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK  269 (463)
T ss_pred             CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence            368899999999999999996321   1111                  1246677778888874 56899999999999


Q ss_pred             EEEcccCcceeEEeeCCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCc-eEEEe
Q psy12456         76 LWDLRKLKNFKTLQLDPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH-YLASS  151 (162)
Q Consensus        76 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~  151 (162)
                      +||+.+.++...+.. +...|.++.|+|. ..++++|+.|  +++++++........-.-.+.|-.++|.|... .+..+
T Consensus       270 lWD~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EEEcCCCCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence            999999888777764 5567999999985 6788889988  56667764322222222345688999988754 55677


Q ss_pred             ecCCeEEEeeC
Q psy12456        152 SMDRTLKLYSL  162 (162)
Q Consensus       152 s~D~~i~iw~~  162 (162)
                      ..||+++-+|+
T Consensus       349 tddG~v~~~D~  359 (463)
T KOG0270|consen  349 TDDGTVYYFDI  359 (463)
T ss_pred             cCCceEEeeec
Confidence            88999998874

>KOG1009|consensus

Probab=99.64  E-value=2e-15  Score=108.23  Aligned_cols=111  Identities=18%  Similarity=0.357  Sum_probs=93.4

Q ss_pred             ccCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECC--------C-----C---eeeeeccCCCCCEEEEEEccCCCEEE
Q psy12456          3 ASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK--------K-----Q---KNVTDFQLDAGPIQALSFSENGYYLA   66 (162)
Q Consensus         3 ~~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~--------~-----~---~~~~~~~~~~~~v~~i~~~~~~~~l~   66 (162)
                      .-+.|...|+++.|+|+|+++|+|+.+|++.+|-..        +     .   ...+.+.+|...|..++|+|++++++
T Consensus        60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~  139 (434)
T KOG1009|consen   60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV  139 (434)
T ss_pred             cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence            345788999999999999999999999999999765        2     1   12345667888999999999999999


Q ss_pred             EEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc
Q psy12456         67 TAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD  114 (162)
Q Consensus        67 s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  114 (162)
                      +++.|..+++||+.+++....+.. +...+..++|.|-.+++++-+.|
T Consensus       140 s~s~dns~~l~Dv~~G~l~~~~~d-h~~yvqgvawDpl~qyv~s~s~d  186 (434)
T KOG1009|consen  140 SGSVDNSVRLWDVHAGQLLAILDD-HEHYVQGVAWDPLNQYVASKSSD  186 (434)
T ss_pred             eeeccceEEEEEeccceeEeeccc-cccccceeecchhhhhhhhhccC
Confidence            999999999999998876665544 44568999999999999997766

>KOG1538|consensus

Probab=99.64  E-value=1.3e-15  Score=115.67  Aligned_cols=145  Identities=14%  Similarity=0.290  Sum_probs=116.9

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEe
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~   89 (162)
                      .|..++|-|||..++.+.. ..+.+||.+.|....++++|...|.+++|+.||+.+++|+.|+.|.+|.-+   ....++
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceee
Confidence            6889999999998876654 579999999999999999999999999999999999999999999999853   334455


Q ss_pred             eCCCCCeeEEEECCCCCEEEEecc-cEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         90 LDPNYEIRDLCFDQSGTYMAVAGT-DVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ..|...|.|+.|+|-.+.+++++- |.-+|...... +.. ..-...|.+++|..||++++-|-.||+|.+=
T Consensus        90 YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~-V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiR  159 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS-VSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIR  159 (1081)
T ss_pred             eccCCeeeEeecCchHHHhhhcchhhccccChhhhh-HHh-hhhheeEEEeeecCCCcEEEEeccCceEEee
Confidence            556678999999999888888774 46666543221 111 1123458889999999999999999999863

>KOG0642|consensus

Probab=99.64  E-value=1.1e-14  Score=108.18  Aligned_cols=159  Identities=20%  Similarity=0.283  Sum_probs=123.9

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC----------eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCe
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ----------KNVTDFQLDAGPIQALSFSENGYYLATAADENC   73 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~   73 (162)
                      .-+|..+|-|+.+.+++..+.+|+.||+|+.|++...          .....+.+|.+.|..+++++....|++++.||+
T Consensus       340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT  419 (577)
T KOG0642|consen  340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT  419 (577)
T ss_pred             EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCce
Confidence            3468889999999999999999999999999966421          123456789999999999999899999999999


Q ss_pred             EEEEEcccCcc--eeE---------------------------------------Eee-C------C--CCCeeEEEECC
Q psy12456         74 VKLWDLRKLKN--FKT---------------------------------------LQL-D------P--NYEIRDLCFDQ  103 (162)
Q Consensus        74 v~~wd~~~~~~--~~~---------------------------------------~~~-~------~--~~~v~~~~~~~  103 (162)
                      ++.|+......  ...                                       +.. .      .  ...+.-+..+|
T Consensus       420 vr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~  499 (577)
T KOG0642|consen  420 VRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP  499 (577)
T ss_pred             EEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC
Confidence            99999753222  000                                       000 0      0  01234456677


Q ss_pred             CCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        104 SGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       104 ~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +..+..++..+  +++++..+.+.+.....|...++++++.|++-+|++++.|+.+++|.+
T Consensus       500 ~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  500 TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             CCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence            77777777776  666777777888888899999999999999999999999999999974

>KOG2110|consensus

Probab=99.64  E-value=3.1e-13  Score=96.24  Aligned_cols=115  Identities=20%  Similarity=0.346  Sum_probs=95.8

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeC--CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeE-EEEEcccC
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTS--DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCV-KLWDLRKL   82 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v-~~wd~~~~   82 (162)
                      ....++.++.+++++.++|.-+.  .|.|.|||+.+-+++..+.+|++++-+++|+++|.+||++|..|+| |++.+.+.
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence            45667888888888889987654  5899999999999999999999999999999999999999999975 89999888


Q ss_pred             cceeEEeeCC-CCCeeEEEECCCCCEEEEeccc--EEEEEe
Q psy12456         83 KNFKTLQLDP-NYEIRDLCFDQSGTYMAVAGTD--VRVFLC  120 (162)
Q Consensus        83 ~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~--~~i~~~  120 (162)
                      +.+..++-.. ...|-+++|+|++++|++.+..  ++|+.+
T Consensus       207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL  247 (391)
T KOG2110|consen  207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL  247 (391)
T ss_pred             cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence            7777665322 2347789999999999887765  666654

>KOG0649|consensus

Probab=99.64  E-value=6.2e-14  Score=95.23  Aligned_cols=151  Identities=13%  Similarity=0.200  Sum_probs=109.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+-+.|++.-+.|..+-+..++.|+.+.-||+++|+..+++++|.+.|.++.-......+++|+.||++++||.++.+++
T Consensus       112 ~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v  191 (325)
T KOG0649|consen  112 VEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHV  191 (325)
T ss_pred             ccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecccccee
Confidence            34567899999986665556668999999999999999999999999999998766678999999999999999998887


Q ss_pred             eEEeeCCC---------CCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCC
Q psy12456         86 KTLQLDPN---------YEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        86 ~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                      +.......         ..|  -++..+..++++|+.. ..+|.++..++...|.- ..+|..+.|-  ...+++++.-+
T Consensus       192 ~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~lslwhLrsse~t~vfpi-pa~v~~v~F~--~d~vl~~G~g~  266 (325)
T KOG0649|consen  192 SMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPI-PARVHLVDFV--DDCVLIGGEGN  266 (325)
T ss_pred             EEeccccChhhcCcccCcee--EEEeccCceEEecCCCceeEEeccCCCceEEEec-ccceeEeeee--cceEEEecccc
Confidence            76543111         113  3444566778887654 88898877666555442 2346666674  34455566555


Q ss_pred             eEEEee
Q psy12456        156 TLKLYS  161 (162)
Q Consensus       156 ~i~iw~  161 (162)
                      .+.-|.
T Consensus       267 ~v~~~~  272 (325)
T KOG0649|consen  267 HVQSYT  272 (325)
T ss_pred             ceeeee
Confidence            555553

>KOG1445|consensus

Probab=99.63  E-value=3e-15  Score=113.08  Aligned_cols=156  Identities=16%  Similarity=0.307  Sum_probs=110.2

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .|+..|+.+.||| ...+||+++.|-+|++||+++++....+.+|.+.|.+++|+|+|+.+++.+.|+++++|+-++.+.
T Consensus       675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            5788999999999 777999999999999999999999999999999999999999999999999999999999886543


Q ss_pred             -eeEEeeCCCCCeeEEEECCCCCEEEEeccc------EEEEEeCCce--EEEE--eecCcccEEEEEECCCC-ceEEEee
Q psy12456         85 -FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD------VRVFLCKQWQ--ELAM--FNEHTAMVTGVRFGTHA-HYLASSS  152 (162)
Q Consensus        85 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~i~~~~~~~--~~~~--~~~h~~~v~~~~~s~~~-~~l~s~s  152 (162)
                       ++.-+..-...-..+.|.-+|.++++.+.|      +.+|+.....  .+..  +.--.. +.--.+.+|. -.|++|-
T Consensus       755 pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGK  833 (1012)
T KOG1445|consen  755 PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGK  833 (1012)
T ss_pred             ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-cccccccCCCceEEEecC
Confidence             222111111223456787889988887765      2334322211  1111  110000 0001123344 4668898


Q ss_pred             cCCeEEEeeC
Q psy12456        153 MDRTLKLYSL  162 (162)
Q Consensus       153 ~D~~i~iw~~  162 (162)
                      .|..|.+|.+
T Consensus       834 GD~~v~~yEv  843 (1012)
T KOG1445|consen  834 GDRFVNMYEV  843 (1012)
T ss_pred             CCceEEEEEe
Confidence            9999999874

>KOG0650|consensus

Probab=99.63  E-value=2.3e-14  Score=107.42  Aligned_cols=155  Identities=19%  Similarity=0.333  Sum_probs=115.1

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCC--EEEEEeCCC------------
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY--YLATAADEN------------   72 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~d~------------   72 (162)
                      |...|.++...|.|.++|+|+.||+||||.+.++.+++++... +.|.+|+|+|.+.  .|+.+....            
T Consensus       399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~  477 (733)
T KOG0650|consen  399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRL  477 (733)
T ss_pred             cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCceeEEEEecCceEEeCccccchh
Confidence            5678999999999999999999999999999999999888754 5799999998653  333333222            


Q ss_pred             --------------------eEEEEEccc--------------CcceeEEeeC---------------------------
Q psy12456         73 --------------------CVKLWDLRK--------------LKNFKTLQLD---------------------------   91 (162)
Q Consensus        73 --------------------~v~~wd~~~--------------~~~~~~~~~~---------------------------   91 (162)
                                          .+..|.-..              .+.+..+.+|                           
T Consensus       478 e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~  557 (733)
T KOG0650|consen  478 EVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK  557 (733)
T ss_pred             hhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc
Confidence                                222332110              0001111111                           


Q ss_pred             -------CCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         92 -------PNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        92 -------~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                             ....+.++.|+|...++.++... ++||++.....++.+......|..++.+|.|.-|+.++.|+.+-.+|+
T Consensus       558 sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDl  636 (733)
T KOG0650|consen  558 SQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDL  636 (733)
T ss_pred             ccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEc
Confidence                   11247789999999988888776 999998776667777788889999999999999999999999988875

>KOG2919|consensus

Probab=99.62  E-value=9.6e-15  Score=102.52  Aligned_cols=147  Identities=22%  Similarity=0.345  Sum_probs=118.0

Q ss_pred             CcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcccCcc-e
Q psy12456          9 PTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-ENCVKLWDLRKLKN-F   85 (162)
Q Consensus         9 ~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~~v~~wd~~~~~~-~   85 (162)
                      ..|.+++||| +.+.+|.|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|.+|++ |..|-.||+|.... +
T Consensus       208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv  287 (406)
T KOG2919|consen  208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV  287 (406)
T ss_pred             ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence            4578999999 5569999999999999999999999999999999999999999999999986 66899999986542 2


Q ss_pred             eEEeeCCCCCeeE--EEECCCCCEEEEeccc--EEEEEeCC-ceEEEEeecCcccEEEEEECCCCceEEEeecCC
Q psy12456         86 KTLQLDPNYEIRD--LCFDQSGTYMAVAGTD--VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        86 ~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~--~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                      ..+..+-...-..  ..+.|.+++|++|+++  +++|+.+. ..++..+..|+..|++++++|-=.++|+++..+
T Consensus       288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr  362 (406)
T KOG2919|consen  288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR  362 (406)
T ss_pred             hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence            2222222212223  3456899999999888  78888876 455777888999999999999888888877543

>KOG2919|consensus

Probab=99.62  E-value=4.2e-14  Score=99.37  Aligned_cols=155  Identities=19%  Similarity=0.324  Sum_probs=116.9

Q ss_pred             CCCcEEEEEeC-------CCCcEEEEeeCCCcEEEEECCCCeeeeeccCC--C---CCEEEEEEccCCCEEEEEeCCCeE
Q psy12456          7 GGPTLTTAQLH-------PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLD--A---GPIQALSFSENGYYLATAADENCV   74 (162)
Q Consensus         7 ~~~~v~~~~~~-------~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~--~---~~v~~i~~~~~~~~l~s~~~d~~v   74 (162)
                      ++..|....|.       |+.+++|+.+.+.-|.+||.-+|+...++.+-  .   ..-.+++|+|||.+|..|- ..+|
T Consensus       103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krci  181 (406)
T KOG2919|consen  103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCI  181 (406)
T ss_pred             cCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceE
Confidence            34455444444       88999999999999999999999988887652  2   2356899999999998654 5789


Q ss_pred             EEEEc-ccCccee---EE---eeCCCCCeeEEEECCCC-CEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCC
Q psy12456         75 KLWDL-RKLKNFK---TL---QLDPNYEIRDLCFDQSG-TYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTH  144 (162)
Q Consensus        75 ~~wd~-~~~~~~~---~~---~~~~~~~v~~~~~~~~~-~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~  144 (162)
                      +++|+ |..+-..   ++   +.....-+.+++|+|.. +.+++++..  .-|+......++..+-+|.+.|+++.|.++
T Consensus       182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed  261 (406)
T KOG2919|consen  182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED  261 (406)
T ss_pred             EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC
Confidence            99999 4333211   11   11224458899999964 588888876  445655556677778899999999999999


Q ss_pred             CceEEEeec-CCeEEEeeC
Q psy12456        145 AHYLASSSM-DRTLKLYSL  162 (162)
Q Consensus       145 ~~~l~s~s~-D~~i~iw~~  162 (162)
                      |..|.+|++ |-.|-.||+
T Consensus       262 Gn~lfsGaRk~dkIl~WDi  280 (406)
T KOG2919|consen  262 GNKLFSGARKDDKILCWDI  280 (406)
T ss_pred             cCeecccccCCCeEEEEee
Confidence            999999876 778999996

>KOG0321|consensus

Probab=99.62  E-value=1e-14  Score=109.83  Aligned_cols=149  Identities=17%  Similarity=0.324  Sum_probs=108.5

Q ss_pred             EEeCC---CCcEEEEeeCCCcEEEEECCCCee------eeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456         14 AQLHP---DGLIFGIGTSDSQVQIWDLKKQKN------VTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus        14 ~~~~~---~g~~~a~g~~dg~i~~wd~~~~~~------~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      +.|++   ...+||.+..||.|.++|.++..-      +..+.+|...|..+.|-|....|++++.|.++++||++..+.
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            44554   455899999999999999876432      356678999999999999888999999999999999987665


Q ss_pred             eeE-EeeCCCCCeeEEEECCCC-CEEEEeccc--EEEEEeCCce---------------------------EEEEeecCc
Q psy12456         85 FKT-LQLDPNYEIRDLCFDQSG-TYMAVAGTD--VRVFLCKQWQ---------------------------ELAMFNEHT  133 (162)
Q Consensus        85 ~~~-~~~~~~~~v~~~~~~~~~-~~~~~~~~~--~~i~~~~~~~---------------------------~~~~~~~h~  133 (162)
                      ... ....|...+.++||.|.. ..|++|+.|  +.||+++...                           .+.....|.
T Consensus       135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s  214 (720)
T KOG0321|consen  135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS  214 (720)
T ss_pred             ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence            544 234456679999999965 567778877  7788764211                           111122233


Q ss_pred             ccEEE---EEECCCCceEEEeec-CCeEEEeeC
Q psy12456        134 AMVTG---VRFGTHAHYLASSSM-DRTLKLYSL  162 (162)
Q Consensus       134 ~~v~~---~~~s~~~~~l~s~s~-D~~i~iw~~  162 (162)
                      ..+.+   +.+..|...||++|. |+.|++|||
T Consensus       215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL  247 (720)
T KOG0321|consen  215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDL  247 (720)
T ss_pred             CceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence            33333   334457888888887 999999996

>KOG4378|consensus

Probab=99.62  E-value=3.4e-15  Score=109.87  Aligned_cols=153  Identities=16%  Similarity=0.285  Sum_probs=122.8

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEe
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~   89 (162)
                      .-.|++......|+++|+..|+|+|||++.+..++.++.|...|+++.++....||++++..|.|.+-.+.+......+.
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~  160 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT  160 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence            34555566666899999999999999999777788889999999999999999999999999999999988766666666


Q ss_pred             eCCCCCeeEEEECCCCCEEEE-eccc--EEEEEeCCceEEE-EeecCcccEEEEEECCCC-ceEEEeecCCeEEEeeC
Q psy12456         90 LDPNYEIRDLCFDQSGTYMAV-AGTD--VRVFLCKQWQELA-MFNEHTAMVTGVRFGTHA-HYLASSSMDRTLKLYSL  162 (162)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~-~~~~--~~i~~~~~~~~~~-~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iw~~  162 (162)
                      ......++-+.|+|..+++++ ++.+  +.+|+...-.++. ..+.|+.+..+++|+|-+ .+|++.+.|..|.+||+
T Consensus       161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~  238 (673)
T KOG4378|consen  161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDI  238 (673)
T ss_pred             cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeec
Confidence            554556889999998776555 5555  6677655433333 346799999999999865 47789999999999985

>KOG1034|consensus

Probab=99.60  E-value=1.9e-13  Score=96.11  Aligned_cols=154  Identities=18%  Similarity=0.255  Sum_probs=121.0

Q ss_pred             CCCcEEEEEeCC-----CCcEEEEeeCCCcEEEEECCCCeeee---ecc--CCCCCEEEEEEccC----CCEEEEEeCCC
Q psy12456          7 GGPTLTTAQLHP-----DGLIFGIGTSDSQVQIWDLKKQKNVT---DFQ--LDAGPIQALSFSEN----GYYLATAADEN   72 (162)
Q Consensus         7 ~~~~v~~~~~~~-----~g~~~a~g~~dg~i~~wd~~~~~~~~---~~~--~~~~~v~~i~~~~~----~~~l~s~~~d~   72 (162)
                      ++.+|-.++|++     +-..+|+.+. ..+.+|+......++   .+.  .|......++|+-+    ..+++.|+.-|
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G  115 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG  115 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence            456788888884     3335666664 578899876554333   332  25567888899754    45888899999


Q ss_pred             eEEEEEcccCcceeEEeeCCCCCeeEEEECCCC-CEEEEeccc--EEEEEeCCceEEEE---eecCcccEEEEEECCCCc
Q psy12456         73 CVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSG-TYMAVAGTD--VRVFLCKQWQELAM---FNEHTAMVTGVRFGTHAH  146 (162)
Q Consensus        73 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~--~~i~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~  146 (162)
                      .|++.|+.+.+....+..| ...|..+.+.|+. ++++++|.|  +++|+..+...+..   +++|...|.++.|++++.
T Consensus       116 vIrVid~~~~~~~~~~~gh-G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd  194 (385)
T KOG1034|consen  116 VIRVIDVVSGQCSKNYRGH-GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD  194 (385)
T ss_pred             EEEEEecchhhhccceecc-CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC
Confidence            9999999887777777664 5579999999975 788899988  89999888777665   468999999999999999


Q ss_pred             eEEEeecCCeEEEeeC
Q psy12456        147 YLASSSMDRTLKLYSL  162 (162)
Q Consensus       147 ~l~s~s~D~~i~iw~~  162 (162)
                      +++|++.|.++++|++
T Consensus       195 ~i~ScGmDhslk~W~l  210 (385)
T KOG1034|consen  195 RIASCGMDHSLKLWRL  210 (385)
T ss_pred             eeeccCCcceEEEEec
Confidence            9999999999999986

>KOG1524|consensus

Probab=99.60  E-value=1.8e-14  Score=107.00  Aligned_cols=142  Identities=14%  Similarity=0.302  Sum_probs=109.6

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC---------e-------------------------------eee
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ---------K-------------------------------NVT   44 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~---------~-------------------------------~~~   44 (162)
                      .+|...+.+..|+|||.=|++.+.||.|++|.-...         +                               .+-
T Consensus       101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i  180 (737)
T KOG1524|consen  101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKII  180 (737)
T ss_pred             hhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccccee
Confidence            367778889999999999999999999999974310         0                               123


Q ss_pred             eccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCce
Q psy12456         45 DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQ  124 (162)
Q Consensus        45 ~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~  124 (162)
                      .+++|++-|.++.|++..+.+++|+.|...++||-........  ..+.++|++++|+|+ +.++.++.+..-       
T Consensus       181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S--~~~ey~ITSva~npd-~~~~v~S~nt~R-------  250 (737)
T KOG1524|consen  181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTS--AAEEYAITSVAFNPE-KDYLLWSYNTAR-------  250 (737)
T ss_pred             EEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccC--Chhccceeeeeeccc-cceeeeeeeeee-------
Confidence            4568888899999999999999999999999999764332222  235678999999999 777787766321       


Q ss_pred             EEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456        125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus       125 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                         .-+...+.|..++|||||..++.|...|.+.+
T Consensus       251 ---~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  251 ---FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ---ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence               11234577999999999999998888887643

>KOG1524|consensus

Probab=99.60  E-value=1.2e-14  Score=108.01  Aligned_cols=139  Identities=16%  Similarity=0.272  Sum_probs=113.0

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEE
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDL   99 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~   99 (162)
                      ...|+..+.||.+.+.+ +.++..+...+|.+.+.+-.|+|||.-|++++.||.|++|.-..+  ++..-.....+|.|+
T Consensus        75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCA  151 (737)
T ss_pred             cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEE
Confidence            34688899999999998 567888889999999999999999999999999999999974321  111112234579999


Q ss_pred             EECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        100 CFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       100 ~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +|.|+..-++-+..+ +.|..+.....+-.++.|.+-|.++.|+|.+..+++|+.|...++||
T Consensus       152 ~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD  214 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD  214 (737)
T ss_pred             EECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeec
Confidence            999998766665554 66655555556667899999999999999999999999999999998

>KOG0974|consensus

Probab=99.59  E-value=4.8e-14  Score=110.87  Aligned_cols=146  Identities=18%  Similarity=0.353  Sum_probs=120.4

Q ss_pred             EEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCC
Q psy12456         14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPN   93 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~   93 (162)
                      +.++++..++++|+.-++|.+|++...+.-..+.+|.+.|.++.++.||.++++.|.|.++++|++.+.+.....-+.|.
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            46788889999999999999999874433335789999999999999999999999999999999988776553334566


Q ss_pred             CCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcc-cEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         94 YEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTA-MVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+..++|.|+  .+++++.|  .++|.++ ...+..+.+|.. .+..++..+.....+|++.|+.+++|++
T Consensus       219 aRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  219 ARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             ceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence            67899999999  88999998  5666443 234446777764 6899999999999999999999999984

>KOG0321|consensus

Probab=99.58  E-value=8.6e-14  Score=104.92  Aligned_cols=157  Identities=18%  Similarity=0.293  Sum_probs=113.9

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeee--ccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEccc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTD--FQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      .+|...|-.+.|-|...+|++.+.|.++++||+++.+.+..  +.+|.+.|.+++|.| +...+++|+.|+.+.+||++-
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~  176 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC  176 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence            36778889999999777899999999999999999888766  889999999999999 566899999999999999863


Q ss_pred             Cc--ce-------------------------eEEeeCCCCCeeE---EEECCCCCEEEEecc-c--EEEEEeCCce----
Q psy12456         82 LK--NF-------------------------KTLQLDPNYEIRD---LCFDQSGTYMAVAGT-D--VRVFLCKQWQ----  124 (162)
Q Consensus        82 ~~--~~-------------------------~~~~~~~~~~v~~---~~~~~~~~~~~~~~~-~--~~i~~~~~~~----  124 (162)
                      ..  .+                         ..... +...+..   +-+..|...|++++. |  ++||+++...    
T Consensus       177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r  255 (720)
T KOG0321|consen  177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR  255 (720)
T ss_pred             cchhhHHHHhhhhhccccCCCCCCchhhcccccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence            21  00                         00000 1112333   456678888888776 5  8999986532    


Q ss_pred             --EE--EEeecC---cccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        125 --EL--AMFNEH---TAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       125 --~~--~~~~~h---~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                        +.  ..+..|   .-.+..+.....|.+|.+.+.|+.|.+|++
T Consensus       256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm  300 (720)
T KOG0321|consen  256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNM  300 (720)
T ss_pred             cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence              11  223334   234566666555677766666999999985

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.57  E-value=2.6e-12  Score=94.22  Aligned_cols=157  Identities=25%  Similarity=0.474  Sum_probs=124.2

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-eeeeccCCC-CCEEEEEE-ccCCC-EEEEEeC-CCeEEEEEc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-NVTDFQLDA-GPIQALSF-SENGY-YLATAAD-ENCVKLWDL   79 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-~~~~~~~~~-~~v~~i~~-~~~~~-~l~s~~~-d~~v~~wd~   79 (162)
                      ..+...+..+.+.+.+..++.++.|+.+.+|+...+. .+..+..+. ..+..+.+ ++++. .+...+. |+.+.+||.
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  141 (466)
T COG2319          62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL  141 (466)
T ss_pred             eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence            4567788999999999999999999999999998876 666676643 36777777 78777 5555444 899999999


Q ss_pred             cc-CcceeEEeeCCCCCeeEEEECCCCCEEEEecc-c--EEEEEeCCceEEEEeecCcccEEEEEECCCCc-eEEEeecC
Q psy12456         80 RK-LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-D--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH-YLASSSMD  154 (162)
Q Consensus        80 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D  154 (162)
                      .. .........+ ...+..++|+|++.+++.++. +  +++|.......+..+..|...|..++|+|++. .+++++.|
T Consensus       142 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  220 (466)
T COG2319         142 STPGKLIRTLEGH-SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD  220 (466)
T ss_pred             cCCCeEEEEEecC-cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence            86 4444555443 446889999999998888864 5  67777666667778888999999999999998 66666999


Q ss_pred             CeEEEeeC
Q psy12456        155 RTLKLYSL  162 (162)
Q Consensus       155 ~~i~iw~~  162 (162)
                      +.|++||+
T Consensus       221 ~~i~~wd~  228 (466)
T COG2319         221 GTIRLWDL  228 (466)
T ss_pred             CcEEEEEC
Confidence            99999973

>KOG1188|consensus

Probab=99.57  E-value=1.4e-13  Score=97.12  Aligned_cols=158  Identities=19%  Similarity=0.303  Sum_probs=113.3

Q ss_pred             CCCCCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCCeee--eeccCCC-CCEEEEEEccCCCEEEEEeC----CCeEE
Q psy12456          5 GAGGPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQKNV--TDFQLDA-GPIQALSFSENGYYLATAAD----ENCVK   75 (162)
Q Consensus         5 ~~~~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~~~~--~~~~~~~-~~v~~i~~~~~~~~l~s~~~----d~~v~   75 (162)
                      ......++.++|..  ....+.+++.||+|++||+|.....  ..++.+. .+..+++.+..++.+++|..    +..|.
T Consensus        67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~  146 (376)
T KOG1188|consen   67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVV  146 (376)
T ss_pred             cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEE
Confidence            34556667777776  5678999999999999999986544  3445554 46667777767788888754    56899


Q ss_pred             EEEcccCcc-eeEEeeCCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCceE---EEEeecCcccEEEEEECCCC-ce
Q psy12456         76 LWDLRKLKN-FKTLQLDPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQWQE---LAMFNEHTAMVTGVRFGTHA-HY  147 (162)
Q Consensus        76 ~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~~~---~~~~~~h~~~v~~~~~s~~~-~~  147 (162)
                      +||+|+.+. +..+...|...|++++|+|+ -.+|++||.|  +.+++.+...+   +...-.|...|..+.|..++ +.
T Consensus       147 lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykr  226 (376)
T KOG1188|consen  147 LWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKR  226 (376)
T ss_pred             EEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcce
Confidence            999998776 55555555667999999996 4688999998  45555543321   22222466679999998666 34


Q ss_pred             EEEeecCCeEEEeeC
Q psy12456        148 LASSSMDRTLKLYSL  162 (162)
Q Consensus       148 l~s~s~D~~i~iw~~  162 (162)
                      +..-+.+.+..+|++
T Consensus       227 I~clTH~Etf~~~el  241 (376)
T KOG1188|consen  227 IMCLTHMETFAIYEL  241 (376)
T ss_pred             EEEEEccCceeEEEc
Confidence            666788888999975

>KOG0307|consensus

Probab=99.57  E-value=1.8e-14  Score=114.14  Aligned_cols=156  Identities=21%  Similarity=0.337  Sum_probs=124.1

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCC--CCEEEEEEccC-CCEEEEEeCCC---eEEEEE
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA--GPIQALSFSEN-GYYLATAADEN---CVKLWD   78 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~--~~v~~i~~~~~-~~~l~s~~~d~---~v~~wd   78 (162)
                      ....-|.+++|+. ...+||+++.+|.+.|||+|..+++-.+..+.  ..+..++|+|+ .+.++++++|.   .|.+||
T Consensus       159 ~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD  238 (1049)
T KOG0307|consen  159 APPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD  238 (1049)
T ss_pred             CCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence            3556789999996 56689999999999999999998887776553  34789999996 45677777654   689999


Q ss_pred             cccCc-ceeEEeeCCCCCeeEEEECCCC-CEEEEecccEEE--EEeCCceEEEEeecCcccEEEEEECCCCc-eEEEeec
Q psy12456         79 LRKLK-NFKTLQLDPNYEIRDLCFDQSG-TYMAVAGTDVRV--FLCKQWQELAMFNEHTAMVTGVRFGTHAH-YLASSSM  153 (162)
Q Consensus        79 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i--~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~  153 (162)
                      +|.-. .++.++.|.. .|.++.|++.+ .++++++.|.++  |+.++.+.+.++.....++..+.|.|... .++.++-
T Consensus       239 lR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asf  317 (1049)
T KOG0307|consen  239 LRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASF  317 (1049)
T ss_pred             ccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhhee
Confidence            98533 3455555444 69999999977 889999888555  45566778888888889999999998765 7788899


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      ||.|.||.+
T Consensus       318 dgkI~I~sl  326 (1049)
T KOG0307|consen  318 DGKISIYSL  326 (1049)
T ss_pred             ccceeeeee
Confidence            999999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.56  E-value=9.4e-13  Score=96.15  Aligned_cols=152  Identities=14%  Similarity=0.256  Sum_probs=99.6

Q ss_pred             CcEEEEEeCCCCcEEE-EeeCCCcEEEEECCCCeeee-------eccCCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEc
Q psy12456          9 PTLTTAQLHPDGLIFG-IGTSDSQVQIWDLKKQKNVT-------DFQLDAGPIQALSFSENGYYLATAAD-ENCVKLWDL   79 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a-~g~~dg~i~~wd~~~~~~~~-------~~~~~~~~v~~i~~~~~~~~l~s~~~-d~~v~~wd~   79 (162)
                      .....++++|+|+++. +...++.|.+||+++...+.       .... ....+.++|+|+++++++++. +++|.+||+
T Consensus       126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~  204 (330)
T PRK11028        126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQL  204 (330)
T ss_pred             CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEE
Confidence            4456788999998775 45556999999997643221       1111 233568999999999988876 899999999


Q ss_pred             ccC----cceeEEeeCCC-----CCeeEEEECCCCCEEEEeccc---EEEEEeCCce----EEEEeecCcccEEEEEECC
Q psy12456         80 RKL----KNFKTLQLDPN-----YEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQ----ELAMFNEHTAMVTGVRFGT  143 (162)
Q Consensus        80 ~~~----~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~----~~~~~~~h~~~v~~~~~s~  143 (162)
                      ...    +.+......+.     .....+.++|+++++.++...   +.+|......    .+...... ....++.|+|
T Consensus       205 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~  283 (330)
T PRK11028        205 KDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDH  283 (330)
T ss_pred             eCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECC
Confidence            732    12222221111     112358899999999887542   6666654322    22222221 2455789999


Q ss_pred             CCceEEEeec-CCeEEEeeC
Q psy12456        144 HAHYLASSSM-DRTLKLYSL  162 (162)
Q Consensus       144 ~~~~l~s~s~-D~~i~iw~~  162 (162)
                      +++++.++.. +++|.+|++
T Consensus       284 dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        284 SGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             CCCEEEEEEccCCcEEEEEE
Confidence            9999887665 889999963

>KOG1408|consensus

Probab=99.55  E-value=9.1e-14  Score=106.41  Aligned_cols=146  Identities=21%  Similarity=0.338  Sum_probs=106.7

Q ss_pred             EEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe--CCCeEEEEEcccCcceeEEee
Q psy12456         13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA--DENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      .++..|-..++|.- ..-.|.+||.++.+.-+....+..++++++|+++|+|+++|-  ....+++|++.....+..+. 
T Consensus        42 gLa~~p~Sgl~aYp-AGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfv-  119 (1080)
T KOG1408|consen   42 GLASVPCSGLCAYP-AGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFV-  119 (1080)
T ss_pred             cccccccccceeec-cCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhh-
Confidence            35555633333321 123577899988776666777888999999999999999985  55679999998766666665 


Q ss_pred             CCCCCeeEEEECCCCCEEEEeccc----EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         91 DPNYEIRDLCFDQSGTYMAVAGTD----VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +|++.+.|++|+|.++|+++.+..    +.+|+|+..-.. .-+.-+..|..++|+.++.|+++++ .+.|++|.|
T Consensus       120 dHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~-asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl  193 (1080)
T KOG1408|consen  120 DHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSG-ASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYL  193 (1080)
T ss_pred             hccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccc-cccccceeEEEEEEccCCceeeeee-eeeEEEEEe
Confidence            467789999999999999987764    344544432111 1233456799999999999999876 688999975

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=6.8e-13  Score=100.18  Aligned_cols=146  Identities=15%  Similarity=0.188  Sum_probs=92.5

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCC---CcEEEEECCCCee--eeeccCCCCCEEEEEEccCCCEEEEEe-CCCeEEEE--E
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSD---SQVQIWDLKKQKN--VTDFQLDAGPIQALSFSENGYYLATAA-DENCVKLW--D   78 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~d---g~i~~wd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d~~v~~w--d   78 (162)
                      +...+...+|+|||+.++..+.+   ..|.+||+++++.  +..++++.   ..++|+|||++|+.++ .++.+.+|  |
T Consensus       202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d  278 (429)
T PRK01742        202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMG  278 (429)
T ss_pred             CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEE
Confidence            34578899999999999887654   3699999988753  44444443   4679999999888765 67776665  5


Q ss_pred             cccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc---cEEEEEeCCc-eEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQW-QELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      +...+ ...+.. +...+...+|+|+|+.++..+.   ..+||..... .....+ .+..  ....|+|++++++..+.+
T Consensus       279 ~~~~~-~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~  353 (429)
T PRK01742        279 ANGGT-PSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD  353 (429)
T ss_pred             CCCCC-eEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC
Confidence            44333 222322 2334678899999998776553   2567765321 111222 2332  345677777777666655


Q ss_pred             CeEEEee
Q psy12456        155 RTLKLYS  161 (162)
Q Consensus       155 ~~i~iw~  161 (162)
                      +.+ .||
T Consensus       354 ~i~-~~D  359 (429)
T PRK01742        354 NVV-KQD  359 (429)
T ss_pred             CEE-EEE
Confidence            433 355

>KOG1273|consensus

Probab=99.55  E-value=1.5e-12  Score=91.47  Aligned_cols=156  Identities=15%  Similarity=0.318  Sum_probs=111.4

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEE--------------------------
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALS--------------------------   57 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~--------------------------   57 (162)
                      .++|--+|+++.|+++|..|++++.|..+.+||+..|.+++.+... .||..++                          
T Consensus        61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~  139 (405)
T KOG1273|consen   61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP  139 (405)
T ss_pred             hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc-CccceeeeccccCCeEEEEEecCCcEEEEecCC
Confidence            3578889999999999999999999999999999988766544321 1222111                          


Q ss_pred             ---------------------EccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCC------------------------
Q psy12456         58 ---------------------FSENGYYLATAADENCVKLWDLRKLKNFKTLQLDP------------------------   92 (162)
Q Consensus        58 ---------------------~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~------------------------   92 (162)
                                           |.+.|+++++|...|.+-+||..+.+.+..++...                        
T Consensus       140 ~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv  219 (405)
T KOG1273|consen  140 KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV  219 (405)
T ss_pred             ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce
Confidence                                 44456789999888888888876654432222110                        


Q ss_pred             -----------------------------CCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecCc-ccEEEE
Q psy12456         93 -----------------------------NYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHT-AMVTGV  139 (162)
Q Consensus        93 -----------------------------~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~-~~v~~~  139 (162)
                                                   +..-.++||+.+|.|+..++..   +-||.-..+..++.+.+.+ .....+
T Consensus       220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV  299 (405)
T KOG1273|consen  220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV  299 (405)
T ss_pred             EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeec
Confidence                                         0012467899999998888755   4455555567777777776 557788


Q ss_pred             EECCCCceEEEeecCCeEEEee
Q psy12456        140 RFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       140 ~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .|.|-...+++- ..|.++||.
T Consensus       300 ~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  300 NWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             ccccceeeeeec-cCCceEEEE
Confidence            899988888877 578899996

>KOG4328|consensus

Probab=99.54  E-value=4.2e-13  Score=97.84  Aligned_cols=155  Identities=17%  Similarity=0.254  Sum_probs=108.7

Q ss_pred             CCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC--e--eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc-
Q psy12456          7 GGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ--K--NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR-   80 (162)
Q Consensus         7 ~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~--~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~-   80 (162)
                      +...|+.++++| .-.+||+++.|++++|||+|+-  +  ++-....|..+|.+..|||++-.|++.+.|..|++||.. 
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~  400 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC  400 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence            455899999999 5557899999999999999862  2  223334688999999999988789999999999999983 


Q ss_pred             ---cCcceeEEeeCCCC----CeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecC-cccEEE-EEECCCCceEE
Q psy12456         81 ---KLKNFKTLQLDPNY----EIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEH-TAMVTG-VRFGTHAHYLA  149 (162)
Q Consensus        81 ---~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h-~~~v~~-~~~s~~~~~l~  149 (162)
                         +.+........+..    ......|.|+..++++|..-  +.|++-...+.+.++... ...|.+ .+|+|-+..++
T Consensus       401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~  480 (498)
T KOG4328|consen  401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLA  480 (498)
T ss_pred             ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccccccee
Confidence               33333333322111    13345799999999998754  667766555555554332 223433 56899888555


Q ss_pred             Ee-ecCCeEEEee
Q psy12456        150 SS-SMDRTLKLYS  161 (162)
Q Consensus       150 s~-s~D~~i~iw~  161 (162)
                      +| +.-|.|.+|.
T Consensus       481 aG~~s~Gki~vft  493 (498)
T KOG4328|consen  481 AGGNSSGKIYVFT  493 (498)
T ss_pred             ccCCccceEEEEe
Confidence            55 4567888874

>KOG1963|consensus

Probab=99.54  E-value=6.8e-13  Score=102.92  Aligned_cols=155  Identities=20%  Similarity=0.328  Sum_probs=117.0

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC--C--eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK--Q--KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~--~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      .|...+++.++||.+.++|+|..||+|.+|.--.  +  .....+.-|..+|.+++|+++|.+|.+|+..+.+-+|.+.+
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            3455689999999999999999999999996433  1  23455777888999999999999999999999999999987


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCC--ceEEEEee-----------cCcccEEEEEECCCCceE
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ--WQELAMFN-----------EHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~-----------~h~~~v~~~~~s~~~~~l  148 (162)
                      .+  +.+-..-..+|..+.++|++.+.+..-.|..|...+.  .+....++           ...+-.+.+.++|..+.+
T Consensus       283 ~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~  360 (792)
T KOG1963|consen  283 GK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL  360 (792)
T ss_pred             CC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence            65  3333334567999999999998888777755444322  11111111           123446778889977777


Q ss_pred             EEeecCCeEEEeeC
Q psy12456        149 ASSSMDRTLKLYSL  162 (162)
Q Consensus       149 ~s~s~D~~i~iw~~  162 (162)
                      +-.+.-++|.+||+
T Consensus       361 vln~~~g~vQ~ydl  374 (792)
T KOG1963|consen  361 VLNGHPGHVQFYDL  374 (792)
T ss_pred             eecCCCceEEEEec
Confidence            78888999999985

>KOG3881|consensus

Probab=99.54  E-value=1.5e-12  Score=93.36  Aligned_cols=155  Identities=21%  Similarity=0.328  Sum_probs=120.9

Q ss_pred             CCCcEEEEEeCCCC-cEEEEeeCC--CcEEEEECCCCeeeeeccCCC---------CCEEEEEEccC--CCEEEEEeCCC
Q psy12456          7 GGPTLTTAQLHPDG-LIFGIGTSD--SQVQIWDLKKQKNVTDFQLDA---------GPIQALSFSEN--GYYLATAADEN   72 (162)
Q Consensus         7 ~~~~v~~~~~~~~g-~~~a~g~~d--g~i~~wd~~~~~~~~~~~~~~---------~~v~~i~~~~~--~~~l~s~~~d~   72 (162)
                      -++++..+.-+|.. .++|+|+..  ..+.+||+.+.+.+.+-+.-.         -.++++.|-+.  ...|+++..-+
T Consensus       147 ~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h  226 (412)
T KOG3881|consen  147 TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH  226 (412)
T ss_pred             cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecce
Confidence            35667777777744 466779988  889999999886665433211         12567788776  78999999999


Q ss_pred             eEEEEEcccCc-ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEE-eecCcccEEEEEECCCCceE
Q psy12456         73 CVKLWDLRKLK-NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAM-FNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        73 ~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l  148 (162)
                      .+++||.+.++ ++..+.. ...++.++...|.+.++.+|..-  +..++.+....... +.+-++.|.++...|..+++
T Consensus       227 qvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~l  305 (412)
T KOG3881|consen  227 QVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVL  305 (412)
T ss_pred             eEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceE
Confidence            99999998654 4555544 34579999999999999998765  56677766665554 78888999999999999999


Q ss_pred             EEeecCCeEEEeeC
Q psy12456        149 ASSSMDRTLKLYSL  162 (162)
Q Consensus       149 ~s~s~D~~i~iw~~  162 (162)
                      |++|.|+.+||+|+
T Consensus       306 as~GLDRyvRIhD~  319 (412)
T KOG3881|consen  306 ASCGLDRYVRIHDI  319 (412)
T ss_pred             EeeccceeEEEeec
Confidence            99999999999985

>KOG4497|consensus

Probab=99.53  E-value=5e-14  Score=99.32  Aligned_cols=149  Identities=19%  Similarity=0.385  Sum_probs=106.0

Q ss_pred             cEEEEEeCCCCcE-EEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCE-EEEEeCCCeEEEEEcccCcceeE
Q psy12456         10 TLTTAQLHPDGLI-FGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYY-LATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        10 ~v~~~~~~~~g~~-~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      .|..+.|..|..+ +.....++.|.+|++.+.+..++++...+++.+++|||||+. |.+...|-.|.+|.+.+.+....
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~  129 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL  129 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence            3556778877665 456667889999999999999999888889999999999955 55556688899999987654332


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEE-------------------------------eec
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAM-------------------------------FNE  131 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~-------------------------------~~~  131 (162)
                        .+++..+..++|+|+|++.+..+..     +.|..++.|+.+++                               +-.
T Consensus       130 --~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY  207 (447)
T KOG4497|consen  130 --PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY  207 (447)
T ss_pred             --cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee
Confidence              2345557889999999999888742     22222211111111                               111


Q ss_pred             C-cccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456        132 H-TAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus       132 h-~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      | .-.+..++|+|.+++++.|+.|+++|+-
T Consensus       208 e~~lG~k~v~wsP~~qflavGsyD~~lrvl  237 (447)
T KOG4497|consen  208 ERGLGLKFVEWSPCNQFLAVGSYDQMLRVL  237 (447)
T ss_pred             eeccceeEEEeccccceEEeeccchhhhhh
Confidence            1 1347788899999999999999988863

>KOG1272|consensus

Probab=99.53  E-value=2.4e-14  Score=104.57  Aligned_cols=144  Identities=20%  Similarity=0.389  Sum_probs=112.2

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      ++...+....-+|-+.++-+|...|+|.+|.....+++..+..|.++|++|++.++|+|++|.+.|..+++||+|+...+
T Consensus       249 t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  249 TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence            45566778889999999999999999999999999999999899999999999999999999999999999999988866


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeC-C--ceEEEEeecC--cccEEEEEECCCCceEEEe
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK-Q--WQELAMFNEH--TAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~-~--~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~  151 (162)
                      .++..  ..+...+++|..|.+.++-+..+.||--. .  ...-..+..|  ..+|..+.|.|....|..|
T Consensus       329 ~t~~t--p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIG  397 (545)
T KOG1272|consen  329 HTYRT--PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIG  397 (545)
T ss_pred             ceeec--CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecc
Confidence            66543  34567889998886665555557887421 1  1111122223  3589999999976655443

>KOG1310|consensus

Probab=99.52  E-value=9.4e-14  Score=103.54  Aligned_cols=153  Identities=18%  Similarity=0.304  Sum_probs=112.8

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc-CCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ-LDAGPIQALSFSE--NGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      ..=|++++|+.+|.+|++|+.|-.+.|||.-..|++..+. +|.+.|.++.|-|  ....+++|..|+.|+++|+...+.
T Consensus        50 ~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~  129 (758)
T KOG1310|consen   50 TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE  129 (758)
T ss_pred             cceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc
Confidence            3458999999999999999999999999999888887774 7999999999998  467899999999999999974221


Q ss_pred             ----------eeEEeeCCCCCeeEEEECCCC-CEEEEeccc--EEEEEeCCceE----------EEEeecCcccEEEEEE
Q psy12456         85 ----------FKTLQLDPNYEIRDLCFDQSG-TYMAVAGTD--VRVFLCKQWQE----------LAMFNEHTAMVTGVRF  141 (162)
Q Consensus        85 ----------~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~--~~i~~~~~~~~----------~~~~~~h~~~v~~~~~  141 (162)
                                ...+.. +...|..++-.|++ ..+.+++.|  ++-++++....          +..+...--...++..
T Consensus       130 ~~~d~~~~~~~~~~~c-ht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lti  208 (758)
T KOG1310|consen  130 GGMDHGMEETTRCWSC-HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTI  208 (758)
T ss_pred             cccccCccchhhhhhh-hhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeee
Confidence                      112222 23346677888887 778888888  55566544210          1111112223567888


Q ss_pred             CCC-CceEEEeecCCeEEEee
Q psy12456        142 GTH-AHYLASSSMDRTLKLYS  161 (162)
Q Consensus       142 s~~-~~~l~s~s~D~~i~iw~  161 (162)
                      +|. ..+|+.|+.|--.++||
T Consensus       209 sp~rp~~laVGgsdpfarLYD  229 (758)
T KOG1310|consen  209 SPSRPYYLAVGGSDPFARLYD  229 (758)
T ss_pred             cCCCCceEEecCCCchhhhhh
Confidence            876 45788899898888887

>KOG2394|consensus

Probab=99.51  E-value=5.9e-14  Score=104.11  Aligned_cols=94  Identities=18%  Similarity=0.347  Sum_probs=82.3

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ..|+..+|+|||++||+.+.||.+||||+.+.+.+..++.--+...+++|||||+|+++|++|-.|.+|.+...+.+..-
T Consensus       291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG  370 (636)
T KOG2394|consen  291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG  370 (636)
T ss_pred             ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence            37899999999999999999999999999998887777766678999999999999999999999999999765655554


Q ss_pred             eeCCCCCeeEEEECC
Q psy12456         89 QLDPNYEIRDLCFDQ  103 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~  103 (162)
                      +. |+..|..++|.|
T Consensus       371 qG-HkSWVs~VaFDp  384 (636)
T KOG2394|consen  371 QG-HKSWVSVVAFDP  384 (636)
T ss_pred             cc-cccceeeEeecc
Confidence            44 456799999987

>KOG1587|consensus

Probab=99.51  E-value=1.8e-12  Score=99.26  Aligned_cols=155  Identities=19%  Similarity=0.265  Sum_probs=113.0

Q ss_pred             CCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCee--eeec----cCCCCCEEEEEEccCC--CEEEEEeCCCeEEEE
Q psy12456          7 GGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKN--VTDF----QLDAGPIQALSFSENG--YYLATAADENCVKLW   77 (162)
Q Consensus         7 ~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~--~~~~----~~~~~~v~~i~~~~~~--~~l~s~~~d~~v~~w   77 (162)
                      ....|+++.|+| +..++|.|+.+|+|.+||++.+..  ...+    ..|..++..+.|-.+.  .-+++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            346789999999 778999999999999999998754  2222    2477899999997643  459999999999999


Q ss_pred             EcccCcc-eeEE----------eeCCCCCeeEEEECCCC-CEEEEecccEEEEEeCCc----------eEEEEeecCccc
Q psy12456         78 DLRKLKN-FKTL----------QLDPNYEIRDLCFDQSG-TYMAVAGTDVRVFLCKQW----------QELAMFNEHTAM  135 (162)
Q Consensus        78 d~~~~~~-~~~~----------~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~----------~~~~~~~~h~~~  135 (162)
                      +++.... +...          +......++.++|.+.. ..+++|..++.|+.....          +....+..|.++
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            9875443 1111          11122357889998864 456677777888773221          123345678899


Q ss_pred             EEEEEECCCCceEEEeecCCeEEEee
Q psy12456        136 VTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       136 v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      |..+.++|....+...+.|-+++||.
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs  426 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWS  426 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEecc
Confidence            99999999987666555699999996

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=5.6e-12  Score=95.16  Aligned_cols=154  Identities=14%  Similarity=0.142  Sum_probs=97.9

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCC---CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEE-EEeCCCeEEEEEcccC
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSD---SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLA-TAADENCVKLWDLRKL   82 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d~~v~~wd~~~~   82 (162)
                      +...+...+|+|||+.++..+.+   ..|.+||+++++... +....+.+...+|+|||+.|+ +.+.++...+|.+...
T Consensus       194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  272 (427)
T PRK02889        194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD  272 (427)
T ss_pred             CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence            45567889999999998877643   359999998876543 222234556789999999887 4577777777665321


Q ss_pred             -cceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCC-ceEEEEeecCcccEEEEEECCCCceEEEeecCC--
Q psy12456         83 -KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR--  155 (162)
Q Consensus        83 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~--  155 (162)
                       .....+.. +........|+|+|+.++..+..   ..+|.... ......+..+........|||++++++..+.++  
T Consensus       273 ~~~~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~  351 (427)
T PRK02889        273 GSGLRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGA  351 (427)
T ss_pred             CCCcEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCc
Confidence             12222222 22234567899999988876532   45665432 112222222223344678999999998766554  


Q ss_pred             -eEEEeeC
Q psy12456        156 -TLKLYSL  162 (162)
Q Consensus       156 -~i~iw~~  162 (162)
                       .|.+||+
T Consensus       352 ~~I~v~d~  359 (427)
T PRK02889        352 FKLYVQDL  359 (427)
T ss_pred             EEEEEEEC
Confidence             5888874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=1.9e-12  Score=97.82  Aligned_cols=145  Identities=12%  Similarity=0.103  Sum_probs=96.9

Q ss_pred             EEEEEeCCCCcEEEEee-CCCcEEEE--ECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcccCccee
Q psy12456         11 LTTAQLHPDGLIFGIGT-SDSQVQIW--DLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA-DENCVKLWDLRKLKNFK   86 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~-~dg~i~~w--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d~~v~~wd~~~~~~~~   86 (162)
                      ....+|+|||+.++.+. .+|.+.||  |+.+++ ...+..+...+...+|+|||+.|+..+ .++...+|++.......
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            34689999999888765 58877665  555554 344555666678899999999877655 57788888875322211


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ... ....  ....|+|+|++++..+.+ +.+++....+.......+  ......|+|++++++.++.++.+++|.
T Consensus       329 ~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~  399 (429)
T PRK01742        329 SLV-GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ  399 (429)
T ss_pred             EEe-cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence            211 1221  346799999999887655 444555544332222222  235678999999999999999888775

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.49  E-value=2.9e-11  Score=88.31  Aligned_cols=152  Identities=12%  Similarity=0.140  Sum_probs=100.8

Q ss_pred             cEEEEEeCCCCcEEEEeeC-CCcEEEEECCCCe----eeeeccCCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcccCc
Q psy12456         10 TLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQK----NVTDFQLDAGPIQALSFSENGYYLATAA-DENCVKLWDLRKLK   83 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d~~v~~wd~~~~~   83 (162)
                      ....++++|+|++++++.. ++.|.+||+++..    .+..+... .....++++|+++++++++ .++.|.+||+.+..
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g  159 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG  159 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence            4568999999998777664 8999999997432    23333322 3456789999998886555 56899999997532


Q ss_pred             cee-----EEeeCCCCCeeEEEECCCCCEEEEecc---cEEEEEeCC----ceEEEEeec------CcccEEEEEECCCC
Q psy12456         84 NFK-----TLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQ----WQELAMFNE------HTAMVTGVRFGTHA  145 (162)
Q Consensus        84 ~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~----~~~~~~~~~------h~~~v~~~~~s~~~  145 (162)
                      .+.     ..........+.+.|+|+++++.+++.   .+.+|+.+.    .+.+..+..      +.....++.|+|++
T Consensus       160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            221     111112234578899999999888754   267777652    233333322      12234468899999


Q ss_pred             ceEEEee-cCCeEEEeeC
Q psy12456        146 HYLASSS-MDRTLKLYSL  162 (162)
Q Consensus       146 ~~l~s~s-~D~~i~iw~~  162 (162)
                      +++.++. .++.|.+|++
T Consensus       240 ~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        240 RHLYACDRTASLISVFSV  257 (330)
T ss_pred             CEEEEecCCCCeEEEEEE
Confidence            9887774 4788999874

>KOG1517|consensus

Probab=99.49  E-value=9.5e-13  Score=104.39  Aligned_cols=153  Identities=20%  Similarity=0.316  Sum_probs=113.8

Q ss_pred             CCcEEEEEeC-CCCcEEEEeeCCCcEEEEECCCC---eeeeeccCCCCC--EEEEEEccCCC-EEEEEeCCCeEEEEEcc
Q psy12456          8 GPTLTTAQLH-PDGLIFGIGTSDSQVQIWDLKKQ---KNVTDFQLDAGP--IQALSFSENGY-YLATAADENCVKLWDLR   80 (162)
Q Consensus         8 ~~~v~~~~~~-~~g~~~a~g~~dg~i~~wd~~~~---~~~~~~~~~~~~--v~~i~~~~~~~-~l~s~~~d~~v~~wd~~   80 (162)
                      +..||++.-+ +.|+++++|..||.||+||.|..   ..++.++.|...  |..+.+.+.|- .|++|+.||.|++||+|
T Consensus      1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred             CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence            3455665544 36899999999999999999864   357788888766  99999988654 59999999999999998


Q ss_pred             cCccee--EEeeCC--CCCeeEEEECCCCCEEEEecc-cEEEEEeCCceEEEEe-------ecCcccEEEEEECCCCceE
Q psy12456         81 KLKNFK--TLQLDP--NYEIRDLCFDQSGTYMAVAGT-DVRVFLCKQWQELAMF-------NEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        81 ~~~~~~--~~~~~~--~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~-------~~h~~~v~~~~~s~~~~~l  148 (162)
                      ......  ....+-  ....+++..++....+|+|+. .++||+... +.+..+       ......+.+++|.|..-.+
T Consensus      1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ll 1366 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLL 1366 (1387)
T ss_pred             cCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhh
Confidence            732211  121211  223899999999999999985 488887532 222211       1234567999999999999


Q ss_pred             EEeecCCeEEEee
Q psy12456        149 ASSSMDRTLKLYS  161 (162)
Q Consensus       149 ~s~s~D~~i~iw~  161 (162)
                      |.|+.|..|.+|.
T Consensus      1367 AaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1367 AAGSADSTVSIYS 1379 (1387)
T ss_pred             hhccCCceEEEee
Confidence            9999999999985

>KOG4547|consensus

Probab=99.49  E-value=4.4e-12  Score=94.88  Aligned_cols=143  Identities=13%  Similarity=0.220  Sum_probs=122.1

Q ss_pred             CCCcEEEEeeCCCcEEEEECCCCeeeeecc--CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCC
Q psy12456         18 PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ--LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYE   95 (162)
Q Consensus        18 ~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~   95 (162)
                      -|...++.|...|.|.+|++..++....+.  .|.++|.++.++.+-..+.+++.|+.+..|+....+....++.... .
T Consensus        68 ~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~  146 (541)
T KOG4547|consen   68 LDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-L  146 (541)
T ss_pred             CCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-c
Confidence            355678999999999999999999888876  5889999999999988999999999999999987777777765444 5


Q ss_pred             eeEEEECCCCCEEEEecccEEEEEeCCceEEEEeecCcccEEEEEECCC-----CceE-EEeecCCeEEEee
Q psy12456         96 IRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTH-----AHYL-ASSSMDRTLKLYS  161 (162)
Q Consensus        96 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~-----~~~l-~s~s~D~~i~iw~  161 (162)
                      +.++|.+|++..+++++..+++|++.+.+.+..|.+|.++|.++.|...     |.++ .++..++-+.+|-
T Consensus       147 ~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~  218 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV  218 (541)
T ss_pred             cceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence            7899999999999999999999999999999999999999999999765     4454 4455566666663

>KOG1310|consensus

Probab=99.48  E-value=2.4e-13  Score=101.44  Aligned_cols=120  Identities=18%  Similarity=0.313  Sum_probs=99.8

Q ss_pred             eeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECC--CCCEEEEeccc--EEEE
Q psy12456         43 VTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQ--SGTYMAVAGTD--VRVF  118 (162)
Q Consensus        43 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~--~~i~  118 (162)
                      ...+++|.++|.++.|+.+|.+|++|+.|-.+.+||....+.+..+.-.|...|.++.|-|  +...+++|..|  ++++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3567899999999999999999999999999999999877777777666667799999988  46788888888  6677


Q ss_pred             EeCCc----------eEEEEeecCcccEEEEEECCCC-ceEEEeecCCeEEEeeC
Q psy12456        119 LCKQW----------QELAMFNEHTAMVTGVRFGTHA-HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       119 ~~~~~----------~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iw~~  162 (162)
                      +....          +....+..|...|..++-.|.+ ..|-+++.||+|+=+|+
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDi  177 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDI  177 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecc
Confidence            66531          2345567899999999998888 78889999999998885

>KOG1538|consensus

Probab=99.48  E-value=6.5e-12  Score=95.93  Aligned_cols=153  Identities=16%  Similarity=0.290  Sum_probs=116.3

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeec---cCCCCCEEEEEEccCC-----CEEEEEeCCCeEEEEE
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF---QLDAGPIQALSFSENG-----YYLATAADENCVKLWD   78 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~i~~~~~~-----~~l~s~~~d~~v~~wd   78 (162)
                      ....|.+++|+-||.++|.|-.||+|.+-+- ++++.-.+   .+...||.+|+|+|..     ..++......++.+|.
T Consensus       131 ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~  209 (1081)
T KOG1538|consen  131 SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ  209 (1081)
T ss_pred             hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEE
Confidence            4567899999999999999999999999974 34433223   3467899999999953     4788888889999988


Q ss_pred             cccCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEE-eCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeE
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL-CKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      +.. +.+.+-+ .-.....|+.+.++|+|++.|+.+..+.. .+.+..+.+......+|+.+...|++++++-|+.||+|
T Consensus       210 LsG-~~Igk~r-~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTi  287 (1081)
T KOG1538|consen  210 LSG-KQIGKDR-ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTI  287 (1081)
T ss_pred             ecc-eeecccc-cCCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCee
Confidence            853 2222111 11234688999999999999999843333 34455666666788899999999999999999999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      -.|++
T Consensus       288 ACyNl  292 (1081)
T KOG1538|consen  288 ACYNL  292 (1081)
T ss_pred             ehhhh
Confidence            88764

>KOG0642|consensus

Probab=99.47  E-value=1.1e-12  Score=97.64  Aligned_cols=113  Identities=17%  Similarity=0.310  Sum_probs=91.2

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC--------CeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK--------QKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW   77 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~w   77 (162)
                      .+...|.+++|+|....+++++.||++.+|++++        -+++.+|.+|.+||.++++.+++.++.+|+-||+|+.|
T Consensus       292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence            4566788999999999999999999999999932        25789999999999999999999999999999999999


Q ss_pred             EcccCc----------ceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEE
Q psy12456         78 DLRKLK----------NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL  119 (162)
Q Consensus        78 d~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~  119 (162)
                      ++....          ....+.. +...+..+++++....+++++.|..++.
T Consensus       372 ~~p~n~dp~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~  422 (577)
T KOG0642|consen  372 NLPPNQDPDDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRL  422 (577)
T ss_pred             ccCCCCCcccccCcchhccceec-cccceeeeeecccccceeeecCCceEEe
Confidence            764211          1122333 3446889999999888999988854433

>KOG1523|consensus

Probab=99.47  E-value=2e-12  Score=90.75  Aligned_cols=158  Identities=15%  Similarity=0.201  Sum_probs=118.7

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC-Ce--eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK-QK--NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~-~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      .+.|...|+.++|+|.++.+++++.|..-.+|.... ++  +.-.+.-+....+++.|+|..+.+++|+.-+.|.+|=+.
T Consensus        51 ls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E  130 (361)
T KOG1523|consen   51 LSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYE  130 (361)
T ss_pred             hhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEe
Confidence            356788999999999999999999999999999843 33  333444567889999999999999999999999887664


Q ss_pred             cCcc--eeE-EeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEe-----CC------c-------eEEEEeecCcccEE
Q psy12456         81 KLKN--FKT-LQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLC-----KQ------W-------QELAMFNEHTAMVT  137 (162)
Q Consensus        81 ~~~~--~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~-----~~------~-------~~~~~~~~h~~~v~  137 (162)
                      ..+.  +.+ .....+..|.++.|+|+.-+++.|+.|  .+|+..     +.      |       +.+.++....+.|.
T Consensus       131 ~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh  210 (361)
T KOG1523|consen  131 QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH  210 (361)
T ss_pred             cccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee
Confidence            2211  111 112234568999999999999999988  455531     10      1       12233444567899


Q ss_pred             EEEECCCCceEEEeecCCeEEEee
Q psy12456        138 GVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       138 ~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .+.|+|.|..|+=.+.|.++.+=|
T Consensus       211 ~v~fs~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  211 GVLFSPSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             eeEeCCCCCEeeEecCCCceEEee
Confidence            999999999999999999887643

>KOG2139|consensus

Probab=99.47  E-value=6.9e-12  Score=89.53  Aligned_cols=146  Identities=18%  Similarity=0.304  Sum_probs=104.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeC-CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .+.-.||+++|++||..+++++. |..|+|||++++..+.-..-..+.++-+.||||+.+|+.+..|+..++|+......
T Consensus       193 pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt  272 (445)
T KOG2139|consen  193 PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT  272 (445)
T ss_pred             CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccce
Confidence            44578999999999999988876 57899999999876654433456788899999999999999999999997654333


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecc-cEEEEEeCCc---------------eEEEEee-----cC----cccEEEE
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGT-DVRVFLCKQW---------------QELAMFN-----EH----TAMVTGV  139 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~~---------------~~~~~~~-----~h----~~~v~~~  139 (162)
                      ...+..... .+...+|+|.|.+++-+.. .-++|.+...               ..+..++     ..    -+....+
T Consensus       273 ~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~l  351 (445)
T KOG2139|consen  273 KERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCL  351 (445)
T ss_pred             ecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCcccee
Confidence            334444333 6899999999988776543 3555543211               0111111     11    3457889


Q ss_pred             EECCCCceEEEee
Q psy12456        140 RFGTHAHYLASSS  152 (162)
Q Consensus       140 ~~s~~~~~l~s~s  152 (162)
                      +|.|.|.++|..-
T Consensus       352 awDpsGeyLav~f  364 (445)
T KOG2139|consen  352 AWDPSGEYLAVIF  364 (445)
T ss_pred             eECCCCCEEEEEE
Confidence            9999999998753

>KOG2321|consensus

Probab=99.46  E-value=3e-12  Score=95.97  Aligned_cols=154  Identities=15%  Similarity=0.279  Sum_probs=120.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC------CC-----CCEEEEEEccCCCEEEEEeCCCeE
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL------DA-----GPIQALSFSENGYYLATAADENCV   74 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~------~~-----~~v~~i~~~~~~~~l~s~~~d~~v   74 (162)
                      ...+.++++..++-..++|+|+.+|.|..||.+....+.++..      |.     ..|++++|+.+|-.++.|..+|.+
T Consensus       173 ~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v  252 (703)
T KOG2321|consen  173 TDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV  252 (703)
T ss_pred             cccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE
Confidence            4457899999999999999999999999999998765544432      22     249999999999999999999999


Q ss_pred             EEEEcccCcceeEEeeCCCCCeeEEEECCC--CCEEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEe
Q psy12456         75 KLWDLRKLKNFKTLQLDPNYEIRDLCFDQS--GTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        75 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      .+||+|+.+....-......+|..+.|.+.  +..+++.... ++||+-.+++....+.... .++.+++-|++.++.+|
T Consensus       253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~A  331 (703)
T KOG2321|consen  253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTA  331 (703)
T ss_pred             EEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccC-CcCceeeecCCceEEEe
Confidence            999999877655444344567888899775  4566666554 7899877777776665444 48899999999999888


Q ss_pred             ecCCeEEEe
Q psy12456        152 SMDRTLKLY  160 (162)
Q Consensus       152 s~D~~i~iw  160 (162)
                      -.+..+..|
T Consensus       332 ne~~~m~~y  340 (703)
T KOG2321|consen  332 NESSKMHTY  340 (703)
T ss_pred             cCCCcceeE
Confidence            777666544

>KOG2111|consensus

Probab=99.44  E-value=7.9e-11  Score=82.76  Aligned_cols=151  Identities=20%  Similarity=0.268  Sum_probs=107.4

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECC-CCeeeeeccCCCCCEEEEEEccC--CCEEEE-EeCCCeEEEEEcccCcc
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLK-KQKNVTDFQLDAGPIQALSFSEN--GYYLAT-AADENCVKLWDLRKLKN   84 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s-~~~d~~v~~wd~~~~~~   84 (162)
                      ..|.++.+.++-  +++.- .+.|.||.+. ..+.++.+.....|=.-++.+|.  ..+|+. |-.-|.|.+-|+...+.
T Consensus        95 ~~I~~V~l~r~r--iVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~  171 (346)
T KOG2111|consen   95 SEIKAVKLRRDR--IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP  171 (346)
T ss_pred             cceeeEEEcCCe--EEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc
Confidence            456777777654  33333 4679999887 34555555543333334566663  233333 23458899999975443


Q ss_pred             -eeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecC--cccEEEEEECCCCceEEEeecCCeEE
Q psy12456         85 -FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEH--TAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        85 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                       .......|...|.|++++.+|..+|++|..   +|||+..+++.+.++..-  ...|.+++|||+.++||.+|.-|+++
T Consensus       172 ~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH  251 (346)
T KOG2111|consen  172 NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH  251 (346)
T ss_pred             CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence             123334467789999999999999999986   899998888888777643  34599999999999999999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      |+.+
T Consensus       252 iF~l  255 (346)
T KOG2111|consen  252 IFSL  255 (346)
T ss_pred             EEEe
Confidence            9864

>KOG2139|consensus

Probab=99.44  E-value=8.4e-12  Score=89.10  Aligned_cols=151  Identities=15%  Similarity=0.265  Sum_probs=112.9

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCC-CCCEEEEEEccC-CCEEEEEeCCCeEEEEEcccCcc--
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLD-AGPIQALSFSEN-GYYLATAADENCVKLWDLRKLKN--   84 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~~~~-~~~l~s~~~d~~v~~wd~~~~~~--   84 (162)
                      .-+..++||+.-.-||++..|..||+||-+. +....++.. ...|.+++|.|. +..|+.|...| |.+|.....-.  
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence            4467889999777899999999999999655 444555532 467999999995 45677776655 89998642110  


Q ss_pred             ----------eeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEe
Q psy12456         85 ----------FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        85 ----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                                .+.++.....+|+++.|.++|..+++++.+   ++||+..+...+.....--+.++-++||||+.+|..+
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA  256 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA  256 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe
Confidence                      111222233579999999999999998865   8888877765554443445568889999999999999


Q ss_pred             ecCCeEEEee
Q psy12456        152 SMDRTLKLYS  161 (162)
Q Consensus       152 s~D~~i~iw~  161 (162)
                      .-|+..++|+
T Consensus       257 t~davfrlw~  266 (445)
T KOG2139|consen  257 TCDAVFRLWQ  266 (445)
T ss_pred             cccceeeeeh
Confidence            9999999994

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=5.7e-11  Score=89.93  Aligned_cols=151  Identities=11%  Similarity=0.099  Sum_probs=100.1

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeC---CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEE-EEeCCCe--EEEEEcc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTS---DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLA-TAADENC--VKLWDLR   80 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d~~--v~~wd~~   80 (162)
                      +...+...+|+|||+.++..+.   +..|.+||+++++.. .+..+.+.+...+|+|||+.|+ +.+.++.  |.+||+.
T Consensus       200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~  278 (435)
T PRK05137        200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR  278 (435)
T ss_pred             CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC
Confidence            4557889999999998887764   467999999887653 3444455677889999998775 4555554  6667876


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEeecC-
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD-  154 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D-  154 (162)
                      +.+. ..+.. .........|+|+|+.++..+..   ..+|.+  ... ....+..+...+....|+|++++++..+.+ 
T Consensus       279 ~~~~-~~Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~  355 (435)
T PRK05137        279 SGTT-TRLTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-NPRRISFGGGRYSTPVWSPRGDLIAFTKQGG  355 (435)
T ss_pred             CCce-EEccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-CeEEeecCCCcccCeEECCCCCEEEEEEcCC
Confidence            5443 22222 22235668999999988876532   344443  332 233344344556778899999999876543 


Q ss_pred             --CeEEEee
Q psy12456        155 --RTLKLYS  161 (162)
Q Consensus       155 --~~i~iw~  161 (162)
                        ..|.+||
T Consensus       356 ~~~~i~~~d  364 (435)
T PRK05137        356 GQFSIGVMK  364 (435)
T ss_pred             CceEEEEEE
Confidence              3466665

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=5.4e-11  Score=90.03  Aligned_cols=152  Identities=14%  Similarity=0.098  Sum_probs=98.2

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCC---CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEE-EEeCCC--eEEEEEcc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSD---SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLA-TAADEN--CVKLWDLR   80 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d~--~v~~wd~~   80 (162)
                      ++..+...+|+|||+.++..+.+   ..|.+||+.+++... +....+.....+|+|||+.++ +.+.++  .|.+||+.
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~  280 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG  280 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence            34567888999999998887743   469999998776533 222233455789999998775 445554  58889987


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeC--CceEEEEeecCcccEEEEEECCCCceEEEeecCC
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCK--QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                      +.+.. .+.. ........+|+|+|++++..+..   ..+|.+.  ..+ ...+..+.......+|+|++++++..+.++
T Consensus       281 ~g~~~-~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~  357 (433)
T PRK04922        281 SRQLT-RLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERLTFQGNYNARASVSPDGKKIAMVHGSG  357 (433)
T ss_pred             CCCeE-ECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEECCC
Confidence            65432 2222 22234567999999988877642   3455443  332 222322333455689999999987655432


Q ss_pred             ---eEEEeeC
Q psy12456        156 ---TLKLYSL  162 (162)
Q Consensus       156 ---~i~iw~~  162 (162)
                         .|.+||+
T Consensus       358 ~~~~I~v~d~  367 (433)
T PRK04922        358 GQYRIAVMDL  367 (433)
T ss_pred             CceeEEEEEC
Confidence               5888874

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.1e-10  Score=88.25  Aligned_cols=151  Identities=15%  Similarity=0.101  Sum_probs=98.7

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeC---CCcEEEEECCCCeee--eeccCCCCCEEEEEEccCCCEEEEE-eCCC--eEEEEE
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTS---DSQVQIWDLKKQKNV--TDFQLDAGPIQALSFSENGYYLATA-ADEN--CVKLWD   78 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~---dg~i~~wd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~-~~d~--~v~~wd   78 (162)
                      +...+...+|+|||+.+|..+.   +..+.+||+++++..  ..++.   .+...+|+|||++|+.. +.++  .|.+||
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d  273 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMD  273 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            3446788999999998886542   356899999887543  23333   34467999999988865 3344  588899


Q ss_pred             cccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCC-ceEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      +.+.+..+ +.. ....+....|+|+|+.++..+.+   .++|.++. ......+..+........|+|++++++..+.+
T Consensus       274 ~~tg~~~~-lt~-~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~  351 (429)
T PRK03629        274 LASGQIRQ-VTD-GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN  351 (429)
T ss_pred             CCCCCEEE-ccC-CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence            87654322 221 22346778999999988776643   46665432 11233333344445678899999998776543


Q ss_pred             ---CeEEEeeC
Q psy12456        155 ---RTLKLYSL  162 (162)
Q Consensus       155 ---~~i~iw~~  162 (162)
                         ..|.+||+
T Consensus       352 ~g~~~I~~~dl  362 (429)
T PRK03629        352 GGQQHIAKQDL  362 (429)
T ss_pred             CCCceEEEEEC
Confidence               34666663

>KOG0322|consensus

Probab=99.37  E-value=1e-12  Score=90.13  Aligned_cols=73  Identities=19%  Similarity=0.481  Sum_probs=69.3

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      ..++|+.+.+-||++++|+++.|+.||||+.++..++..++-|.+.|.+++|+|+...++.++.|.+|.+|++
T Consensus       250 knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  250 KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            3567888999999999999999999999999999999999999999999999999999999999999999986

>KOG0771|consensus

Probab=99.37  E-value=7.5e-12  Score=90.36  Aligned_cols=108  Identities=20%  Similarity=0.455  Sum_probs=82.9

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceE-------
Q psy12456         54 QALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQE-------  125 (162)
Q Consensus        54 ~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~-------  125 (162)
                      ..++|+.+|..+++++.||++|+|+...+........+ ..+|.++.|+|+|+++++-+.+ .+||...+...       
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~-~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAH-HAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhh-cCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCc
Confidence            57899999999999999999999997665555544444 4479999999999999998877 78887543200       


Q ss_pred             ---------------------E----------EE-----eec-----------CcccEEEEEECCCCceEEEeecCCeEE
Q psy12456        126 ---------------------L----------AM-----FNE-----------HTAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus       126 ---------------------~----------~~-----~~~-----------h~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                                           +          ..     ...           -...|++++-|++|+++|-|+.||.|-
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence                                 0          00     000           022588999999999999999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      |++.
T Consensus       307 i~~~  310 (398)
T KOG0771|consen  307 IYDA  310 (398)
T ss_pred             EEEe
Confidence            9873

>KOG1272|consensus

Probab=99.37  E-value=2.4e-12  Score=94.29  Aligned_cols=149  Identities=13%  Similarity=0.277  Sum_probs=122.5

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ..|+.+.|-|---+|++++..|.++--|+.+|+.+..+....+.+..+.-+|-+..+-+|...|+|.+|.-...+.+..+
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi  289 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI  289 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence            45778899999999999999999999999999999999888889999999999999999999999999998776665555


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .. +..+|.++++.++|.|+++.+-|  ++||+++....+.++.. ..+...++||..+ .| +.|.--.+.||.
T Consensus       290 Lc-H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lL-A~~~G~~v~iw~  360 (545)
T KOG1272|consen  290 LC-HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LL-ALSYGDHVQIWK  360 (545)
T ss_pred             Hh-cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ce-eeecCCeeeeeh
Confidence            43 56689999999999999999988  89999887766655544 4567788888444 33 445555688884

>KOG3914|consensus

Probab=99.36  E-value=3.4e-11  Score=86.70  Aligned_cols=150  Identities=15%  Similarity=0.178  Sum_probs=101.9

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee----eeeccCCCCCEEEEEEccCCCEEEEEeCCC---eEEEEEccc
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN----VTDFQLDAGPIQALSFSENGYYLATAADEN---CVKLWDLRK   81 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~---~v~~wd~~~   81 (162)
                      ........+|+++++|++..+....+++++....    +..+..... -+++.|..+......+..-|   .+.+|....
T Consensus        63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~-~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~  141 (390)
T KOG3914|consen   63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKR-PTAISFIREDTSVLVADKAGDVYSFDILSADS  141 (390)
T ss_pred             ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccC-cceeeeeeccceEEEEeecCCceeeeeecccc
Confidence            3455667899999999999998887888776443    233333222 23455555555555554444   444454433


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCc--eEEEE-eecCcccEEEEEECCCCceEEEeecCCeEE
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW--QELAM-FNEHTAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      +..  .....|...+.++.++||+++++++..|-+|+..+-.  ..+.. .-+|+..|..++.-+ ++.|+|+|.|++++
T Consensus       142 ~~~--~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr  218 (390)
T KOG3914|consen  142 GRC--EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLR  218 (390)
T ss_pred             cCc--chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEE
Confidence            332  2233456678999999999999999999666654322  23333 468999999999875 55689999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      +||+
T Consensus       219 ~Wd~  222 (390)
T KOG3914|consen  219 LWDI  222 (390)
T ss_pred             EEec
Confidence            9985

>KOG0644|consensus

Probab=99.36  E-value=2.8e-13  Score=105.13  Aligned_cols=114  Identities=25%  Similarity=0.430  Sum_probs=100.8

Q ss_pred             eeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEe
Q psy12456         43 VTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLC  120 (162)
Q Consensus        43 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~  120 (162)
                      +..+.+|...|.+..|...|.++++|++|..+++|...+..+......| ...+++++.+.+..++++++.|  +++|-.
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh-s~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH-SGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC-ccccchhccchhhhhhhhcccCceEEEEec
Confidence            4456688889999999999999999999999999998777776666664 4579999999999999999999  888888


Q ss_pred             CCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        121 KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       121 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ....++..+.+|++.|++++|+|..    +.+.||++++||
T Consensus       262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd  298 (1113)
T KOG0644|consen  262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWD  298 (1113)
T ss_pred             CCCchHHHHhccccceeeeccCccc----cCCCCCceEecc
Confidence            8888888899999999999999965    778999999998

>KOG2111|consensus

Probab=99.36  E-value=1.5e-10  Score=81.35  Aligned_cols=78  Identities=19%  Similarity=0.416  Sum_probs=71.1

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCc-EEEEECCCCeeeeeccC--CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQ-VQIWDLKKQKNVTDFQL--DAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~-i~~wd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      ..+|...|.+++++-+|.++|+++..|+ |||||..+|+.+.+++-  ....|.+|+|||+..+|+.+|..|++.++.++
T Consensus       177 I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  177 INAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             EEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence            4588999999999999999999999988 78999999999998863  34679999999999999999999999999997


Q ss_pred             c
Q psy12456         81 K   81 (162)
Q Consensus        81 ~   81 (162)
                      .
T Consensus       257 ~  257 (346)
T KOG2111|consen  257 D  257 (346)
T ss_pred             c
Confidence            5

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.35  E-value=5.4e-10  Score=82.77  Aligned_cols=151  Identities=16%  Similarity=0.255  Sum_probs=97.9

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcccCcceeEE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA-DENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d~~v~~wd~~~~~~~~~~   88 (162)
                      .-..+.++|||+++.+.+.||.|.++|+.+++.+.+++.... -.++++++||+++++++ .++.+.++|.++.+.+...
T Consensus        38 ~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I  116 (369)
T PF02239_consen   38 PHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI  116 (369)
T ss_dssp             EEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred             ceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence            335577999999999999999999999999999999986544 57899999999999886 5789999999988877665


Q ss_pred             eeC------CCCCeeEEEECCCCCEEEEeccc-EEEEEe--CCceEE-EEeecCcccEEEEEECCCCceEEEe-ecCCeE
Q psy12456         89 QLD------PNYEIRDLCFDQSGTYMAVAGTD-VRVFLC--KQWQEL-AMFNEHTAMVTGVRFGTHAHYLASS-SMDRTL  157 (162)
Q Consensus        89 ~~~------~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~--~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~-s~D~~i  157 (162)
                      ...      ....+..+-.+|....++..-.+ .++|..  ...+.+ ...-.-........|+|+++++..+ .....|
T Consensus       117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i  196 (369)
T PF02239_consen  117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI  196 (369)
T ss_dssp             E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred             ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence            432      12345677778887755555443 555544  332222 1222334567788999999987654 445567


Q ss_pred             EEee
Q psy12456        158 KLYS  161 (162)
Q Consensus       158 ~iw~  161 (162)
                      -++|
T Consensus       197 ~viD  200 (369)
T PF02239_consen  197 AVID  200 (369)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6665

...

>KOG0644|consensus

Probab=99.35  E-value=1.2e-12  Score=101.77  Aligned_cols=149  Identities=16%  Similarity=0.298  Sum_probs=118.4

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      |...|.|+.|.-.|.++.+|+.|..++||.+.+..+..+..+|.+.|+.++.+.+..++++++.|..|++|.++....+.
T Consensus       189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvs  268 (1113)
T KOG0644|consen  189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVS  268 (1113)
T ss_pred             hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHH
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999999877777


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe-----ecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF-----NEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      .+..| ...|++++|+|-.    +.+.|  +++|+++ +..+...     -..+..+..+.|-..+.-++|++.|+..+.
T Consensus       269 vLrgh-tgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n  342 (1113)
T KOG0644|consen  269 VLRGH-TGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARN  342 (1113)
T ss_pred             HHhcc-ccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCccccc
Confidence            77664 4569999999965    33333  7888776 2222111     112244666667767777888888887776


Q ss_pred             ee
Q psy12456        160 YS  161 (162)
Q Consensus       160 w~  161 (162)
                      |.
T Consensus       343 ~e  344 (1113)
T KOG0644|consen  343 HE  344 (1113)
T ss_pred             ch
Confidence            64

>KOG4227|consensus

Probab=99.33  E-value=1.6e-10  Score=83.72  Aligned_cols=155  Identities=10%  Similarity=0.133  Sum_probs=115.3

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC------CeeeeeccC-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK------QKNVTDFQL-DAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~------~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      ..-|+++.|+.++.+||+|+.|..+++|++..      .++|..... |...|.+++|+-...++.+|..+++|..-|+.
T Consensus        56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE  135 (609)
T KOG4227|consen   56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIE  135 (609)
T ss_pred             ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecc
Confidence            34589999999999999999999999999853      467665543 45889999999999999999999999999998


Q ss_pred             cCcceeEEeeCC-CCCeeEEEECCCCCEEEEecccEE--EEEeCCce-EEEE--eecCcccEEEEEECCCC-ceEEEeec
Q psy12456         81 KLKNFKTLQLDP-NYEIRDLCFDQSGTYMAVAGTDVR--VFLCKQWQ-ELAM--FNEHTAMVTGVRFGTHA-HYLASSSM  153 (162)
Q Consensus        81 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~--i~~~~~~~-~~~~--~~~h~~~v~~~~~s~~~-~~l~s~s~  153 (162)
                      +.+.+..+.... ...|-.+..+|....+++.+.+.+  +|+.+..+ .+..  ..........+.|.|.. .++++++.
T Consensus       136 t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~  215 (609)
T KOG4227|consen  136 TKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSE  215 (609)
T ss_pred             cceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccc
Confidence            877665554322 346778889999889988888744  44443322 1111  11223345667798864 57788888


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      .+-+.+||.
T Consensus       216 ~~G~~~~D~  224 (609)
T KOG4227|consen  216 TGGPNVFDR  224 (609)
T ss_pred             cCCCCceee
Confidence            888899984

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.32  E-value=4e-10  Score=84.72  Aligned_cols=151  Identities=13%  Similarity=0.148  Sum_probs=99.5

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCC---CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEE-EeCCC--eEEEEEccc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSD---SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT-AADEN--CVKLWDLRK   81 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~d~--~v~~wd~~~   81 (162)
                      +..+...+|+|||+++|.+..+   ..|.+||+.+++... +..+.+.+.+++|+||++.|+. .+.++  .|.+||+.+
T Consensus       189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~  267 (417)
T TIGR02800       189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG  267 (417)
T ss_pred             CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence            3356778899999999887754   479999998875433 2234455667899999987764 44443  588888875


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEeecCC-
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR-  155 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~-  155 (162)
                      .+.. .+.. .........|+|+++.++..+..   ..+|.+  ...+ ...+..+...+....|+|++++++.++.++ 
T Consensus       268 ~~~~-~l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~  344 (417)
T TIGR02800       268 KQLT-RLTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGG  344 (417)
T ss_pred             CCEE-ECCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCCCccCeEECCCCCEEEEEEccCC
Confidence            4322 2211 22223456899999988766542   345543  3222 334444556677889999999998887765 


Q ss_pred             --eEEEeeC
Q psy12456        156 --TLKLYSL  162 (162)
Q Consensus       156 --~i~iw~~  162 (162)
                        .|.+||+
T Consensus       345 ~~~i~~~d~  353 (417)
T TIGR02800       345 GFNIAVMDL  353 (417)
T ss_pred             ceEEEEEeC
Confidence              6777763

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=7.2e-10  Score=83.85  Aligned_cols=141  Identities=9%  Similarity=0.125  Sum_probs=89.7

Q ss_pred             EEEEEeCCCCcEEEEe-eCCC--cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC-CeEEEE--EcccCcc
Q psy12456         11 LTTAQLHPDGLIFGIG-TSDS--QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE-NCVKLW--DLRKLKN   84 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g-~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-~~v~~w--d~~~~~~   84 (162)
                      +...+|+|||+.++.. ..+|  .|.+||+++++... +..+...+...+|+|||+.|+..+.+ +...+|  |+...+ 
T Consensus       245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-  322 (429)
T PRK03629        245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-  322 (429)
T ss_pred             cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-
Confidence            3467899999988765 3345  48889998876544 33334466788999999988777654 444555  554432 


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      ...+... .......+|+|+|++++..+.+     +.+++....+ ...+... .......|+||+++++.++.|+.
T Consensus       323 ~~~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        323 PQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLTDT-FLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             eEEeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence            2222222 2234568899999998886543     3344444433 2223221 12346789999999998888764

>KOG1240|consensus

Probab=99.28  E-value=3.7e-10  Score=91.14  Aligned_cols=156  Identities=13%  Similarity=0.264  Sum_probs=101.4

Q ss_pred             CCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC-------eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q psy12456          7 GGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ-------KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD   78 (162)
Q Consensus         7 ~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd   78 (162)
                      |.+.++.++.++ ++.+|++|+.||+|++||.++-       +...++.-...++..+.+.+.++.++.++.||.|.+.+
T Consensus      1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLR 1126 (1431)
T ss_pred             ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEE
Confidence            455666777765 5599999999999999999752       22334443457899999999999999999999999998


Q ss_pred             cccCc--c-----eeEEeeCCCC-CeeEEEECCC-CC-EEEEeccc--EEEEEeCCceEE--EEeecCcccEEEEEECCC
Q psy12456         79 LRKLK--N-----FKTLQLDPNY-EIRDLCFDQS-GT-YMAVAGTD--VRVFLCKQWQEL--AMFNEHTAMVTGVRFGTH  144 (162)
Q Consensus        79 ~~~~~--~-----~~~~~~~~~~-~v~~~~~~~~-~~-~~~~~~~~--~~i~~~~~~~~~--~~~~~h~~~v~~~~~s~~  144 (162)
                      +.-.+  .     ......+... .+..-++... +. .++.+...  +..|+.+.....  ...+.-.+.|+++..+|.
T Consensus      1127 id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~ 1206 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW 1206 (1431)
T ss_pred             ccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCC
Confidence            86421  1     1111111111 2333333322 22 33333322  334443322111  122334567999999999


Q ss_pred             CceEEEeecCCeEEEeeC
Q psy12456        145 AHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       145 ~~~l~s~s~D~~i~iw~~  162 (162)
                      ++|++.|+.-|.+-+||+
T Consensus      1207 ~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1207 CNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred             ceEEEEecCCceEEEEEe
Confidence            999999999999999996

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.26  E-value=2.8e-09  Score=78.98  Aligned_cols=137  Identities=20%  Similarity=0.260  Sum_probs=94.7

Q ss_pred             cEE-EEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEE
Q psy12456         21 LIF-GIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDL   99 (162)
Q Consensus        21 ~~~-a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~   99 (162)
                      +++ ++-..+|+|.+.|..+.+.+..+.....+-..+.++||++++.+++.|+.|.++|+.+.+.+.+.+...  ....+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~--~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG--NPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS--EEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC--CcceE
Confidence            455 455568999999999999999998655444567899999999999999999999999988877776533  46889


Q ss_pred             EECCCCCEEEEeccc---EEEEEeCCceEEEEeecC-------cccEEEEEECCCCceEEEeecC-CeEEE
Q psy12456        100 CFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEH-------TAMVTGVRFGTHAHYLASSSMD-RTLKL  159 (162)
Q Consensus       100 ~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h-------~~~v~~~~~s~~~~~l~s~s~D-~~i~i  159 (162)
                      +++++|++++++...   +.+++..+.+.++.+...       ...+.++..+|....++..-.| +.|-+
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~v  154 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWV  154 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEE
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEE
Confidence            999999999998753   778887888877766533       3457788888887755544444 44444

...

>KOG1963|consensus

Probab=99.24  E-value=1.5e-09  Score=84.80  Aligned_cols=146  Identities=14%  Similarity=0.211  Sum_probs=108.9

Q ss_pred             EEEEeCCCCcEEEEeeCCCcEEEEECCCCee-eeec---cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc--C--c
Q psy12456         12 TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN-VTDF---QLDAGPIQALSFSENGYYLATAADENCVKLWDLRK--L--K   83 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~-~~~~---~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~--~--~   83 (162)
                      ..+..++.|.+.+..-.. .+.+|+..++.. ...+   ..|.-++++.+++|.+++++++..||.|.+|.-..  .  .
T Consensus       164 ~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~  242 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGIVHMC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE  242 (792)
T ss_pred             ccEEEcCCceEEEEEEee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence            457788888877766654 577888766442 1111   13555689999999999999999999999997532  1  1


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEecccEE--EEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVR--VFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ....+.+|+. +|.++.|+++|.++++|+.+..  +|...+.+ .+.+..-.++|.++.+|||+...+....|..|.+-
T Consensus       243 t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li  319 (792)
T KOG1963|consen  243 TCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI  319 (792)
T ss_pred             cceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence            2345667655 6999999999999999998844  45444443 33345667899999999999999999999988764

>KOG1587|consensus

Probab=99.23  E-value=6.4e-10  Score=85.47  Aligned_cols=156  Identities=18%  Similarity=0.233  Sum_probs=111.1

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEE---EECCCC-----eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEE
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQI---WDLKKQ-----KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKL   76 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~---wd~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~   76 (162)
                      .....+++++|.| +-..|.+|+.+|.|.-   ++++.+     +.+..+..|.++|.++.++|=+..++..+.|-++++
T Consensus       345 ~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vri  424 (555)
T KOG1587|consen  345 SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRI  424 (555)
T ss_pred             ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEe
Confidence            4556789999998 6668999999999987   333322     224456678899999999996655555555999999


Q ss_pred             EEcc-cCcceeEEeeCCCCCeeEEEECCCCC-EEEEeccc--EEEEEeCC--ceEEEEeecCcccEEEEEECCCCceEEE
Q psy12456         77 WDLR-KLKNFKTLQLDPNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQ--WQELAMFNEHTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus        77 wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s  150 (162)
                      |... ....+..+..+.. .+.+++|||... .++++..+  +.+|++..  ..++....-+....+.+.|++.++.++.
T Consensus       425 Ws~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav  503 (555)
T KOG1587|consen  425 WSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV  503 (555)
T ss_pred             ccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEE
Confidence            9976 3333333333222 489999999864 55555555  66676543  2344444445666777888999999999


Q ss_pred             eecCCeEEEeeC
Q psy12456        151 SSMDRTLKLYSL  162 (162)
Q Consensus       151 ~s~D~~i~iw~~  162 (162)
                      |...|++++|++
T Consensus       504 Gd~~G~~~~~~l  515 (555)
T KOG1587|consen  504 GDANGTTHILKL  515 (555)
T ss_pred             ecCCCcEEEEEc
Confidence            999999999985

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.23  E-value=7.1e-11  Score=59.06  Aligned_cols=39  Identities=21%  Similarity=0.467  Sum_probs=36.6

Q ss_pred             ceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        123 WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       123 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ++.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            357788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4227|consensus

Probab=99.22  E-value=2.7e-10  Score=82.49  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=94.6

Q ss_pred             eccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc------cCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEE-
Q psy12456         45 DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR------KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRV-  117 (162)
Q Consensus        45 ~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i-  117 (162)
                      .+.+|.++|.++.|+.++++|++|+.|..+++|++.      ..+.++.+..++...|.|++|.....++.+|..+..| 
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            345788999999999999999999999999999973      3355555555666779999999999999999877443 


Q ss_pred             -EEeCCceEEEEeec--CcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        118 -FLCKQWQELAMFNE--HTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       118 -~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                       .+..+.+.+..+..  ..+.|.++.-+|....|++.+.|+.|.+||.
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~  178 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN  178 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEec
Confidence             34555555554442  3357999999999999999999999999984

>KOG3881|consensus

Probab=99.22  E-value=2.4e-10  Score=82.27  Aligned_cols=113  Identities=22%  Similarity=0.297  Sum_probs=97.4

Q ss_pred             EEEEEeCCC--CcEEEEeeCCCcEEEEECCCC-eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456         11 LTTAQLHPD--GLIFGIGTSDSQVQIWDLKKQ-KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        11 v~~~~~~~~--g~~~a~g~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      ++.+.|-|.  ...||+++.-+++|+||.+.+ +|+..|.....+++++..-|+++++.+|..-+.+..+|++..+....
T Consensus       205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence            578889887  889999999999999999875 68888888888999999999999999999999999999998776555


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW  123 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~  123 (162)
                      ........++++..+|+.+++++++-|  +||++.++-
T Consensus       285 ~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  285 GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            222345579999999999999999988  888887663

>KOG0280|consensus

Probab=99.22  E-value=4.1e-10  Score=78.56  Aligned_cols=153  Identities=14%  Similarity=0.249  Sum_probs=105.7

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCC-Ceeeee-ccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKK-QKNVTD-FQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~-~~~~~~-~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      .|...+-.+.|+. +-+++.+|+.|+.++-||.|. ++.+.. -+.|...|.+|.-+| ...++++|+.|-.|++||.|+
T Consensus       163 ~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  163 VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence            4555666777775 557999999999999999994 333332 456778888888886 688999999999999999986


Q ss_pred             Cc-ceeEEeeCCCCCeeEEEECCCCC--EEEEeccc-EEEEEeCCc--e---EEEEeecCcccEEEEEECCCCceEEEee
Q psy12456         82 LK-NFKTLQLDPNYEIRDLCFDQSGT--YMAVAGTD-VRVFLCKQW--Q---ELAMFNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        82 ~~-~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~-~~i~~~~~~--~---~~~~~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                      +. ++..-  .-...|..++.+|.-.  .++++-.+ .+|......  +   .....+.|.+.+.+-.|.....++||++
T Consensus       243 m~kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs  320 (339)
T KOG0280|consen  243 MGKPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS  320 (339)
T ss_pred             ccCccccC--ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeee
Confidence            43 22222  2234588888888533  34444333 555544321  2   3455778888888888865556788875


Q ss_pred             -cCCeEE-Ee
Q psy12456        153 -MDRTLK-LY  160 (162)
Q Consensus       153 -~D~~i~-iw  160 (162)
                       .|+.++ +|
T Consensus       321 FYDk~~~~~W  330 (339)
T KOG0280|consen  321 FYDKKIRQLW  330 (339)
T ss_pred             ccccceeeee
Confidence             588755 76

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.7e-09  Score=81.74  Aligned_cols=142  Identities=12%  Similarity=0.145  Sum_probs=87.9

Q ss_pred             cEEEEEeCCCCcEEE-EeeCCCcEEEEEC--CCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcccC-cc
Q psy12456         10 TLTTAQLHPDGLIFG-IGTSDSQVQIWDL--KKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-ENCVKLWDLRKL-KN   84 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a-~g~~dg~i~~wd~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~~v~~wd~~~~-~~   84 (162)
                      .+...+|+|||+.++ +.+.+|...||.+  ..++ ...+..+.+.....+|+|||++++..+. ++...+|.+... ..
T Consensus       241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             CccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence            345789999998876 4567887777654  3333 4455555555567889999998886654 456677765321 11


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                      ......... ......|+|+|++++..+.+     +.+++....+.. .+... .......|+|+++.++.++.++
T Consensus       320 ~~~lt~~g~-~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        320 AQRVTFTGS-YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             eEEEecCCC-CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence            222222222 23457899999999876543     445555444332 23222 2346789999999887776544

>KOG0290|consensus

Probab=99.19  E-value=1.4e-09  Score=75.96  Aligned_cols=146  Identities=16%  Similarity=0.273  Sum_probs=103.0

Q ss_pred             CCCCcEEEEEeCCCC-cEEEEeeCCCcEEEEECCCCee---eeeccCCCCCEEEEEEcc-CCCEEEEEeCC-CeEEEEEc
Q psy12456          6 AGGPTLTTAQLHPDG-LIFGIGTSDSQVQIWDLKKQKN---VTDFQLDAGPIQALSFSE-NGYYLATAADE-NCVKLWDL   79 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g-~~~a~g~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d-~~v~~wd~   79 (162)
                      +|...|..++|..++ .+||+.+.||.+|+||+|.-+.   +.+-.....+..-++|++ |-+++++-..| ..|.+-|+
T Consensus       194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi  273 (364)
T KOG0290|consen  194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI  273 (364)
T ss_pred             ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence            577788999999844 4899999999999999997543   333333346788899998 55677766544 57899999


Q ss_pred             ccCcc-eeEEeeCCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCc------eEEEEeecCcccEEEEEECC-CCceE
Q psy12456         80 RKLKN-FKTLQLDPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQW------QELAMFNEHTAMVTGVRFGT-HAHYL  148 (162)
Q Consensus        80 ~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~------~~~~~~~~h~~~v~~~~~s~-~~~~l  148 (162)
                      |.... +..++. |...|+.++|.|. ...+++++.|  ..+|++...      .++..+. -.+.|+.+.|++ ++.++
T Consensus       274 R~P~tpva~L~~-H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwi  351 (364)
T KOG0290|consen  274 RVPCTPVARLRN-HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWI  351 (364)
T ss_pred             cCCCcceehhhc-CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEE
Confidence            87653 444554 4567999999996 4677788888  456665432      1233333 445699999985 56788


Q ss_pred             EEeec
Q psy12456        149 ASSSM  153 (162)
Q Consensus       149 ~s~s~  153 (162)
                      +.+..
T Consensus       352 ai~~~  356 (364)
T KOG0290|consen  352 AICFG  356 (364)
T ss_pred             EEEec
Confidence            76653

>KOG1517|consensus

Probab=99.18  E-value=9.1e-10  Score=88.01  Aligned_cols=155  Identities=19%  Similarity=0.315  Sum_probs=106.2

Q ss_pred             CCcEEEEEeC-C-CCcEEEEeeCCCcEEEEECCCC-----eeeeecc---CC----CCCEEEEEEccCCCEEEEEeCCCe
Q psy12456          8 GPTLTTAQLH-P-DGLIFGIGTSDSQVQIWDLKKQ-----KNVTDFQ---LD----AGPIQALSFSENGYYLATAADENC   73 (162)
Q Consensus         8 ~~~v~~~~~~-~-~g~~~a~g~~dg~i~~wd~~~~-----~~~~~~~---~~----~~~v~~i~~~~~~~~l~s~~~d~~   73 (162)
                      ...|+.+.+- . |..++.+++.||.||||+--..     +.+..+.   .+    .+.=.-+.|-....+|++++.-..
T Consensus      1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred             CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence            3455666554 3 6668999999999999975322     2332222   11    111134577776666767676889


Q ss_pred             EEEEEcccCcceeEEeeCCCCCeeEEEEC-CCCCEEEEeccc--EEEEEeCCc---eEEEEeecCccc--EEEEEECCCC
Q psy12456         74 VKLWDLRKLKNFKTLQLDPNYEIRDLCFD-QSGTYMAVAGTD--VRVFLCKQW---QELAMFNEHTAM--VTGVRFGTHA  145 (162)
Q Consensus        74 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~--~~i~~~~~~---~~~~~~~~h~~~--v~~~~~s~~~  145 (162)
                      |++||..+-+.+..........++.++-+ +.|..++.|-.|  +++|+.+..   ..+..+..|+..  |.++.+.+.|
T Consensus      1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred             EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence            99999986555555555445456666544 346888888877  677775432   356778889988  9999998766


Q ss_pred             c-eEEEeecCCeEEEeeC
Q psy12456        146 H-YLASSSMDRTLKLYSL  162 (162)
Q Consensus       146 ~-~l~s~s~D~~i~iw~~  162 (162)
                      - .+++|+.||.|++||+
T Consensus      1269 ~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred             CcceeeeccCCeEEEEec
Confidence            4 4899999999999996

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.17  E-value=1.3e-10  Score=58.08  Aligned_cols=38  Identities=26%  Similarity=0.681  Sum_probs=36.3

Q ss_pred             eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q psy12456         41 KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD   78 (162)
Q Consensus        41 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd   78 (162)
                      +++..+++|.++|.+|+|+|++++|++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            67888999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=8.6e-09  Score=78.44  Aligned_cols=149  Identities=11%  Similarity=0.090  Sum_probs=89.7

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCC-C--cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEE-EeCCCe--EEEEEccc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSD-S--QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT-AADENC--VKLWDLRK   81 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~d-g--~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~d~~--v~~wd~~~   81 (162)
                      ...+....|+|||+.++..+.+ +  .|.+||+.+++.... ..-.+.....+|+|||+.|+. .+.++.  |.++|+.+
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t  295 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT  295 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence            3456678999999988876543 3  588889987764322 211223346799999998875 455564  66777765


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEeec-CC
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSM-DR  155 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-D~  155 (162)
                      .+. ..+.. ........+|+|++++++..+..   ..+|.+  ...+. ..+...........|+|++++++-.+. ++
T Consensus       296 g~~-~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g  372 (448)
T PRK04792        296 KAL-TRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNG  372 (448)
T ss_pred             CCe-EECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence            442 22222 22235667899999988776532   455543  33322 222222222345689999998876554 34


Q ss_pred             eEEEe
Q psy12456        156 TLKLY  160 (162)
Q Consensus       156 ~i~iw  160 (162)
                      ..++|
T Consensus       373 ~~~I~  377 (448)
T PRK04792        373 KFNIA  377 (448)
T ss_pred             ceEEE
Confidence            44443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=1.7e-08  Score=76.41  Aligned_cols=152  Identities=11%  Similarity=0.086  Sum_probs=93.6

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCC---CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEE-EeCCC--eEEEEEcc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSD---SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT-AADEN--CVKLWDLR   80 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~d~--~v~~wd~~   80 (162)
                      ++..+....|+|||+.++..+.+   ..|.+||+++++... +....+.+...+|+|||++|+. .+.++  .|.+||+.
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~  275 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA  275 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence            45567888999999988776643   358889998876533 2222334556899999998874 44444  57788887


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEeecC-
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD-  154 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D-  154 (162)
                      +.+.. .+.. .........|+|+|+.++..+..   ..+|..  ...+. ..+...........|+|++++++-.+.+ 
T Consensus       276 ~~~~~-~lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~  352 (430)
T PRK00178        276 SRQLS-RVTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQD  352 (430)
T ss_pred             CCCeE-Eccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEEccC
Confidence            64432 2221 22234567899999987766532   345543  33322 2222112233457899999998766543 


Q ss_pred             C--eEEEeeC
Q psy12456        155 R--TLKLYSL  162 (162)
Q Consensus       155 ~--~i~iw~~  162 (162)
                      +  .|.+||+
T Consensus       353 ~~~~l~~~dl  362 (430)
T PRK00178        353 GNFHVAAQDL  362 (430)
T ss_pred             CceEEEEEEC
Confidence            3  4666653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=6.7e-09  Score=78.75  Aligned_cols=140  Identities=11%  Similarity=0.120  Sum_probs=88.4

Q ss_pred             cEEEEEeCCCCcEEE-EeeCCCc--EEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CC--eEEEEEcccCc
Q psy12456         10 TLTTAQLHPDGLIFG-IGTSDSQ--VQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-EN--CVKLWDLRKLK   83 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a-~g~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~--~v~~wd~~~~~   83 (162)
                      .+...+|+|||+.++ +.+.+|.  |.+||+++++. ..+..+.......+|+||+++++..+. ++  .|.++|+...+
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~  325 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN  325 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
Confidence            456788999998765 4455555  66778877654 445555555667899999998887764 33  57777875433


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCC-ceEEEEeecCcccEEEEEECCCCceEEEeec
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                       ...+... ........|+|+|++++..+.+   .+++.++. ......+. ....+....|+|++++++-.+.
T Consensus       326 -~~~lt~~-~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        326 -PRRISFG-GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             -eEEeecC-CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEc
Confidence             2333222 2235567899999999876532   34444332 12222222 2234677899999998865544

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=8.6e-09  Score=78.14  Aligned_cols=146  Identities=12%  Similarity=0.115  Sum_probs=90.2

Q ss_pred             EEEEEeCCCCcEEEE-eeCCC--cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CCe--EEEEEcccCcc
Q psy12456         11 LTTAQLHPDGLIFGI-GTSDS--QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-ENC--VKLWDLRKLKN   84 (162)
Q Consensus        11 v~~~~~~~~g~~~a~-g~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~~--v~~wd~~~~~~   84 (162)
                      ..+.+|+|||+.++. .+.+|  .|.+||+.+++. ..+..+.......+|+||+++++..+. ++.  +.++|+...+ 
T Consensus       250 ~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-  327 (433)
T PRK04922        250 NGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-  327 (433)
T ss_pred             ccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-
Confidence            346789999987754 44455  599999987764 345545444567899999998887764 444  5555655433 


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecC---Ce
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD---RT  156 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D---~~  156 (162)
                      ...+..... .....+|+|+|++++..+.+     +.+++....+.. .+. +........|+|++++++..+.+   ..
T Consensus       328 ~~~lt~~g~-~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~  404 (433)
T PRK04922        328 AERLTFQGN-YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGV  404 (433)
T ss_pred             eEEeecCCC-CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceE
Confidence            222222222 24467999999998876432     445555444333 332 22234567899999988766543   23


Q ss_pred             EEEee
Q psy12456        157 LKLYS  161 (162)
Q Consensus       157 i~iw~  161 (162)
                      +.+++
T Consensus       405 L~~~~  409 (433)
T PRK04922        405 LAAVS  409 (433)
T ss_pred             EEEEE
Confidence            55444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.11  E-value=2.3e-07  Score=68.43  Aligned_cols=156  Identities=17%  Similarity=0.298  Sum_probs=101.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeC-CCcEEEEECCCCe--e--eeeccC-CCCCEEEEEEccCCCEEEEEe-CCCeEEEEE
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQK--N--VTDFQL-DAGPIQALSFSENGYYLATAA-DENCVKLWD   78 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~~--~--~~~~~~-~~~~v~~i~~~~~~~~l~s~~-~d~~v~~wd   78 (162)
                      +.++-..++.++|+|+++.+... ...|.+|+++...  .  ...+.. ....-+.++|+|+++++.... .+++|.+++
T Consensus       141 q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  141 QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEe
Confidence            44566788999999997766543 4679999997654  2  122222 234568899999998876655 578899999


Q ss_pred             ccc----CcceeEEeeC-----CCCCeeEEEECCCCCEEEEeccc---EEEEEeCC----ceEEEEeecCcccEEEEEEC
Q psy12456         79 LRK----LKNFKTLQLD-----PNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQ----WQELAMFNEHTAMVTGVRFG  142 (162)
Q Consensus        79 ~~~----~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~----~~~~~~~~~h~~~v~~~~~s  142 (162)
                      +..    .+..+.....     .......+.++|+|+++.++...   +.++..+.    .+.+..+........++.++
T Consensus       221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s  300 (345)
T PF10282_consen  221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS  300 (345)
T ss_dssp             EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred             ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence            872    1222222211     11246789999999998887543   77777732    34445555445557899999


Q ss_pred             CCCceEEEee-cCCeEEEee
Q psy12456        143 THAHYLASSS-MDRTLKLYS  161 (162)
Q Consensus       143 ~~~~~l~s~s-~D~~i~iw~  161 (162)
                      |++++|+.+. .++.|.+|+
T Consensus       301 ~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  301 PDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEecCCCeEEEEE
Confidence            9999998776 456888886

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.10  E-value=1.3e-07  Score=66.09  Aligned_cols=150  Identities=14%  Similarity=0.240  Sum_probs=99.0

Q ss_pred             EEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC------C-CCCEEEEEEccC------CCEEEEEeCCCeEEEEE
Q psy12456         12 TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL------D-AGPIQALSFSEN------GYYLATAADENCVKLWD   78 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~------~-~~~v~~i~~~~~------~~~l~s~~~d~~v~~wd   78 (162)
                      ..++|+||+.+||.+.+.|+|++||+.. ..+..+..      . ...|.++.|-+.      ...|+.-+.+|.++-|-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            4689999999999999999999999864 33333321      1 245777777542      22466667778777666


Q ss_pred             cc-----cCcceeEEee--CCCCCeeEEEECCCCCEEEEeccc-------------EEEEEeCC----------------
Q psy12456         79 LR-----KLKNFKTLQL--DPNYEIRDLCFDQSGTYMAVAGTD-------------VRVFLCKQ----------------  122 (162)
Q Consensus        79 ~~-----~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~-------------~~i~~~~~----------------  122 (162)
                      +.     ..+....+.+  +....|.++.++|.-++|++|+..             +..|-.-.                
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~  205 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT  205 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence            52     2222333333  334569999999998888887642             11221100                


Q ss_pred             -----ceEE-----EEee---cCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        123 -----WQEL-----AMFN---EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       123 -----~~~~-----~~~~---~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                           ....     +.+.   .....|..|+.|||++.||+...+|.|.+|++
T Consensus       206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence                 0000     0111   13456899999999999999999999999986

>KOG1064|consensus

Probab=99.10  E-value=1.1e-09  Score=91.40  Aligned_cols=148  Identities=18%  Similarity=0.320  Sum_probs=114.0

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL-DAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      ..|-+..-||...+.++|+.||.+++|....++.+..+.. -...|+.+.|+.+|+.+..+..||.+.+|.... +....
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s 2287 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP-KPYTS 2287 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC-cceec
Confidence            4567777899999999999999999999998888887763 237789999999999999999999999999873 44444


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEecc--c-EEEEEeCCc-----eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAGT--D-VRVFLCKQW-----QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~--~-~~i~~~~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      ++.|.+ ...++.|-.  ..+++++.  | ..+.++++.     ..+.  ..|.+.++.+++-|..+.|++||.+|.|.+
T Consensus      2288 ~qchnk-~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2288 WQCHNK-ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred             cccCCc-cccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence            554433 466777655  44555442  2 334433332     1222  789999999999999999999999999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus      2363 ~D~ 2365 (2439)
T KOG1064|consen 2363 FDI 2365 (2439)
T ss_pred             eeh
Confidence            995

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=4.4e-08  Score=74.16  Aligned_cols=149  Identities=13%  Similarity=0.121  Sum_probs=86.5

Q ss_pred             EEEEeCCCCcEEEEeeC-CC----cEEEEECCCC---eeeeeccCCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEc--c
Q psy12456         12 TTAQLHPDGLIFGIGTS-DS----QVQIWDLKKQ---KNVTDFQLDAGPIQALSFSENGYYLATAA-DENCVKLWDL--R   80 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~-dg----~i~~wd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d~~v~~wd~--~   80 (162)
                      ...+|+|||+.||..+. +|    .+.+|++..+   ++......+.+.....+|+|||++|+..+ .++...+|.+  .
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~  313 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID  313 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence            35689999998876553 22    3444776642   33222222223345679999999887765 4665556644  2


Q ss_pred             c-CcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEe-ec
Q psy12456         81 K-LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASS-SM  153 (162)
Q Consensus        81 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~  153 (162)
                      . ......+... ...+....|+|+|+.++..+.+     +.+++....+.. .+......+....|+|++++++-. ..
T Consensus       314 ~~g~~~~~lt~~-~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~  391 (428)
T PRK01029        314 PEGQSPRLLTKK-YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGN  391 (428)
T ss_pred             ccccceEEeccC-CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECC
Confidence            1 1112222222 2235678999999988876432     455555544333 333333456778999999987643 32


Q ss_pred             --CCeEEEeeC
Q psy12456        154 --DRTLKLYSL  162 (162)
Q Consensus       154 --D~~i~iw~~  162 (162)
                        ...+.++++
T Consensus       392 ~g~~~L~~vdl  402 (428)
T PRK01029        392 SNESELYLISL  402 (428)
T ss_pred             CCCceEEEEEC
Confidence              245666653

>KOG0974|consensus

Probab=99.09  E-value=7.6e-09  Score=82.32  Aligned_cols=146  Identities=18%  Similarity=0.212  Sum_probs=114.8

Q ss_pred             EEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCC----CEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456         13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG----PIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~----~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ...+..+.+.++.++.++.+.+||...+...........    +..-+.++++.-++++|+.-+.|.+|+....+.....
T Consensus        92 g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l  171 (967)
T KOG0974|consen   92 GAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRL  171 (967)
T ss_pred             ccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCccee
Confidence            356677888899999999999999987766655543321    2333456778889999999999999998632222223


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEE-EeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELA-MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      . .|+..+-++.++-+|.++++.|.|  +++|...+.+... ..-+|+..|+.+.|.|.  .++|++.|-+.++|+
T Consensus       172 ~-GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~  244 (967)
T KOG0974|consen  172 K-GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG  244 (967)
T ss_pred             c-ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence            3 456678999999999999999998  8999887766554 56689999999999987  899999999999995

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=4.7e-08  Score=73.99  Aligned_cols=153  Identities=14%  Similarity=0.114  Sum_probs=89.4

Q ss_pred             CcEEEEEeCCCCcE---EEEeeCCC--cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-----CCeEEEEE
Q psy12456          9 PTLTTAQLHPDGLI---FGIGTSDS--QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-----ENCVKLWD   78 (162)
Q Consensus         9 ~~v~~~~~~~~g~~---~a~g~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-----d~~v~~wd   78 (162)
                      ..+..=+|+|||+.   +.+...+|  .|.+.++.+++... +....+.....+|+|||++|+..+.     +..+..|+
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~  263 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS  263 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence            34455689999974   22444444  47777887765332 2222233456799999998887653     22344577


Q ss_pred             cccCc--ceeEEeeCCCCCeeEEEECCCCCEEEEecc---cEEEEEeCC---ceEEEEeecCcccEEEEEECCCCceEEE
Q psy12456         79 LRKLK--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQ---WQELAMFNEHTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus        79 ~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s  150 (162)
                      +....  ................+|+|+|+.|+..+.   ..++|....   ......+..+...+....||||+++++.
T Consensus       264 ~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf  343 (428)
T PRK01029        264 LETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAF  343 (428)
T ss_pred             cccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEE
Confidence            65421  111121111122356799999998887653   245665421   2223444445556778899999998876


Q ss_pred             eecC---CeEEEeeC
Q psy12456        151 SSMD---RTLKLYSL  162 (162)
Q Consensus       151 ~s~D---~~i~iw~~  162 (162)
                      .+.+   ..|.+||+
T Consensus       344 ~~~~~g~~~I~v~dl  358 (428)
T PRK01029        344 CSVIKGVRQICVYDL  358 (428)
T ss_pred             EEcCCCCcEEEEEEC
Confidence            6543   35777774

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.08  E-value=4.4e-07  Score=66.97  Aligned_cols=156  Identities=17%  Similarity=0.319  Sum_probs=101.4

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeC-CCcEEEEECCCC-eeee---ecc----------CCCCCEEEEEEccCCCEEEEEeC-
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQ-KNVT---DFQ----------LDAGPIQALSFSENGYYLATAAD-   70 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~-~~~~---~~~----------~~~~~v~~i~~~~~~~~l~s~~~-   70 (162)
                      .+.....++++|++++++++.. +|.+.+++++.. +...   .+.          ........+.++|+++++++... 
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence            4556677899999998887764 899999999873 3221   121          11234678999999998888753 


Q ss_pred             CCeEEEEEcccCc--c--eeEEeeCCCCCeeEEEECCCCCEEEEecc---cEEEEEeC--C--ceEEEEeecC------c
Q psy12456         71 ENCVKLWDLRKLK--N--FKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCK--Q--WQELAMFNEH------T  133 (162)
Q Consensus        71 d~~v~~wd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~--~--~~~~~~~~~h------~  133 (162)
                      ...|.+|++....  .  ............+.+.|+|+++++.+...   .+.++.+.  .  .+.+......      .
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  244 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE  244 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence            3479999986543  1  23344455566899999999998877653   26666665  2  2233332211      2


Q ss_pred             ccEEEEEECCCCceEE-EeecCCeEEEeeC
Q psy12456        134 AMVTGVRFGTHAHYLA-SSSMDRTLKLYSL  162 (162)
Q Consensus       134 ~~v~~~~~s~~~~~l~-s~s~D~~i~iw~~  162 (162)
                      .....++++|++++|- +...+.+|.+|++
T Consensus       245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~  274 (345)
T PF10282_consen  245 NAPAEIAISPDGRFLYVSNRGSNSISVFDL  274 (345)
T ss_dssp             SSEEEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred             CCceeEEEecCCCEEEEEeccCCEEEEEEE
Confidence            2578899999999874 4445678888764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2321|consensus

Probab=99.06  E-value=6.6e-09  Score=78.44  Aligned_cols=145  Identities=21%  Similarity=0.335  Sum_probs=105.8

Q ss_pred             EeC-CCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCC-
Q psy12456         15 QLH-PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDP-   92 (162)
Q Consensus        15 ~~~-~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~-   92 (162)
                      .+| |...++.. +....|.=+++.+|.-+..|....+++.+|.+++...+|++|..+|.|.+||.|..+.+..+.... 
T Consensus       140 ~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~  218 (703)
T KOG2321|consen  140 KYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS  218 (703)
T ss_pred             cccCCCccEEEe-ecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc
Confidence            344 34444544 445668889999999999998888999999999999999999999999999998766555443221 


Q ss_pred             ---------CCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe-ecCcccEEEEEECCC--CceEEEeecCCeEE
Q psy12456         93 ---------NYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF-NEHTAMVTGVRFGTH--AHYLASSSMDRTLK  158 (162)
Q Consensus        93 ---------~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~-~~h~~~v~~~~~s~~--~~~l~s~s~D~~i~  158 (162)
                               ...|+++.|+.+|-.+++|..+  +-||+++..+++..- ....-+|..+.|.+.  +..++|. ....++
T Consensus       219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~k  297 (703)
T KOG2321|consen  219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILK  297 (703)
T ss_pred             cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhh
Confidence                     1248999999999999999887  456666666555332 233457888999765  3455543 345789


Q ss_pred             Eee
Q psy12456        159 LYS  161 (162)
Q Consensus       159 iw~  161 (162)
                      |||
T Consensus       298 iWd  300 (703)
T KOG2321|consen  298 IWD  300 (703)
T ss_pred             hcc
Confidence            997

>KOG4547|consensus

Probab=99.02  E-value=4.5e-08  Score=73.85  Aligned_cols=105  Identities=16%  Similarity=0.100  Sum_probs=92.7

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      +.|..+|+++.++-+-..|.+++.|+.+..|+......++.++.....+.+++++||+..+++++  ++|++||+.+.+.
T Consensus        99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev  176 (541)
T KOG4547|consen   99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV  176 (541)
T ss_pred             CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceE
Confidence            57788999999998888999999999999999999999999998888899999999999999988  6899999999888


Q ss_pred             eeEEeeCCCCCeeEEEECCC-----CCEEEEec
Q psy12456         85 FKTLQLDPNYEIRDLCFDQS-----GTYMAVAG  112 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~  112 (162)
                      +..|..| ..+|+++.|.-.     |.+++++.
T Consensus       177 v~~ftgh-~s~v~t~~f~~~~~g~~G~~vLssa  208 (541)
T KOG4547|consen  177 VITFTGH-GSPVRTLSFTTLIDGIIGKYVLSSA  208 (541)
T ss_pred             EEEecCC-CcceEEEEEEEeccccccceeeecc
Confidence            8888764 558999999766     77877754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.01  E-value=7.3e-08  Score=72.56  Aligned_cols=142  Identities=12%  Similarity=0.162  Sum_probs=87.2

Q ss_pred             cEEEEEeCCCCcEEEE-eeCCC--cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CC--eEEEEEcccCc
Q psy12456         10 TLTTAQLHPDGLIFGI-GTSDS--QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-EN--CVKLWDLRKLK   83 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~-g~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~--~v~~wd~~~~~   83 (162)
                      .+.+.+|+|||+.|+. .+.++  .|.+||+.+++.. .+..+.......+|+|++++|+..+. ++  .|.++|+...+
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            4556889999987664 44444  5888898876543 34444444556789999998877654 33  56677776543


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCc-eEEEEeecCcccEEEEEECCCCceEEEeecCC
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQW-QELAMFNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                      . ..+... ........|+|++++++..+.+   .+++.++.. .....+... .......|+|++++|+..+.++
T Consensus       314 ~-~~l~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       314 V-RRLTFR-GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             E-EEeecC-CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            2 223222 2235677899999998887654   255544321 122222222 2234568999999887776654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1334|consensus

Probab=99.00  E-value=4.6e-09  Score=77.79  Aligned_cols=157  Identities=18%  Similarity=0.299  Sum_probs=111.0

Q ss_pred             CCCCCcEEEEEeCCCCc-EEEEeeCCCcEEEEECCCCeeeeecc---CCCC---CEEEEEEccCC-CEEEEEeCCCeEEE
Q psy12456          5 GAGGPTLTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQKNVTDFQ---LDAG---PIQALSFSENG-YYLATAADENCVKL   76 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~~~~~~~---~~~~---~v~~i~~~~~~-~~l~s~~~d~~v~~   76 (162)
                      +.+..+|.-+++-|+.. -|.+.+.|+.+.-+|++++.+...+.   .+..   ...+|+..|.. +++++++.|..+++
T Consensus       229 ~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~Rv  308 (559)
T KOG1334|consen  229 APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARV  308 (559)
T ss_pred             ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhh
Confidence            46677888888888544 57889999999999999876654443   2322   46788999954 48999999999999


Q ss_pred             EEcccCcce------eEEee-----CCCCCeeEEEECCCCCEEEEecccEEEEEeCC----c----------eEEEE-ee
Q psy12456         77 WDLRKLKNF------KTLQL-----DPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ----W----------QELAM-FN  130 (162)
Q Consensus        77 wd~~~~~~~------~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~----~----------~~~~~-~~  130 (162)
                      ||.+.....      .++-.     .....|+++.|+.++.-++++=.|..||.+..    .          ..+++ ++
T Consensus       309 YD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK  388 (559)
T KOG1334|consen  309 YDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK  388 (559)
T ss_pred             hcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhc
Confidence            999754321      22211     12335899999977655555545555555432    1          23344 67


Q ss_pred             cCc--ccEEEEEE-CCCCceEEEeecCCeEEEee
Q psy12456        131 EHT--AMVTGVRF-GTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       131 ~h~--~~v~~~~~-s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +|.  ..|.++-| .|...|+++||.-|.|.||+
T Consensus       389 GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~  422 (559)
T KOG1334|consen  389 GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD  422 (559)
T ss_pred             ccccccccceeeeccCccceEEecCccceEEEEe
Confidence            775  35778877 79999999999999999997

>KOG0280|consensus

Probab=98.98  E-value=3.9e-08  Score=68.88  Aligned_cols=132  Identities=14%  Similarity=0.178  Sum_probs=93.2

Q ss_pred             EEEEeCCCCcEEEEeeCCCcEEEEECCCCe--eeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCcc-e-e
Q psy12456         12 TTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--NVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLKN-F-K   86 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~~-~-~   86 (162)
                      -+++|++.+.-++++.++|.+.+-+.....  .+++++.|+-+.....|+. +.+.+.+|+.|+.+..||+|..+. + +
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            467899989999999999999965544443  3457889998888888875 457899999999999999994332 1 1


Q ss_pred             EEeeCCCCCeeEEEECC-CCCEEEEeccc--EEEEEeCC-ceEEEEeecCcccEEEEEECCCC
Q psy12456         87 TLQLDPNYEIRDLCFDQ-SGTYMAVAGTD--VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHA  145 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~--~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~  145 (162)
                      ..+. +...|.++.-+| .+.++++|+.|  +++|+.+. .+++..- .-.+.|+.++++|.-
T Consensus       205 n~kv-H~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  205 NSKV-HTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEI  265 (339)
T ss_pred             ccee-eecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchh
Confidence            1122 233577776665 57899999998  77777552 3344221 223678888888753

>KOG2315|consensus

Probab=98.97  E-value=1.4e-07  Score=71.10  Aligned_cols=125  Identities=17%  Similarity=0.339  Sum_probs=88.8

Q ss_pred             cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEE--eCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEE
Q psy12456         31 QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATA--ADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYM  108 (162)
Q Consensus        31 ~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~--~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  108 (162)
                      ++.+.+.+..+..-.+. ..+||.++.|+|+++.++.+  -.-..+.+||++- ..+  +.. ...+-.++-|+|.|.++
T Consensus       252 ~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v--~df-~egpRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPV--FDF-PEGPRNTAFFNPHGNII  326 (566)
T ss_pred             eEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEe--EeC-CCCCccceEECCCCCEE
Confidence            47777766333333332 36899999999999876655  3456899999863 323  333 23345778999999999


Q ss_pred             EEeccc-----EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEee------cCCeEEEeeC
Q psy12456        109 AVAGTD-----VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSS------MDRTLKLYSL  162 (162)
Q Consensus       109 ~~~~~~-----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s------~D~~i~iw~~  162 (162)
                      +.++.+     +.||+....+.+..+..-.  -+-+.|+|||++|.|+.      -|+.++||+.
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             EEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            998753     7899987777776666543  34568999999998875      3788999973

>KOG2314|consensus

Probab=98.97  E-value=2e-08  Score=75.66  Aligned_cols=137  Identities=15%  Similarity=0.262  Sum_probs=97.1

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC-----------CeEEEEEc
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE-----------NCVKLWDL   79 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-----------~~v~~wd~   79 (162)
                      -|.+.|||.|.||++--.-| |.+|--.+-..++.|. | ..|.-+.|||..+||++-+..           ..+.+||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            37899999999999887766 9999644444455554 4 358889999999999998651           47899999


Q ss_pred             ccCcceeEEee--CCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEE
Q psy12456         80 RKLKNFKTLQL--DPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus        80 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s  150 (162)
                      ++......+..  .+...-.-+.||.+++|+|.-..+ +.|+...+...+..-.-.-..|....|+|.++.||=
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY  363 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY  363 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence            98876666654  222223457899999999987666 778776554333222223345777889998877763

>KOG1354|consensus

Probab=98.97  E-value=1.4e-08  Score=72.54  Aligned_cols=157  Identities=17%  Similarity=0.299  Sum_probs=104.0

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-----eeeeccCCC------------CCEEEEEEccCC--CEEE
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-----NVTDFQLDA------------GPIQALSFSENG--YYLA   66 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~~--~~l~   66 (162)
                      ++...|+++.|...|.+||+|..+|.|.+|.-....     ....++.|.            ..|..|.|.+++  ..++
T Consensus        23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            455678999999999999999999999999743321     223344443            357788998764  4677


Q ss_pred             EEeCCCeEEEEEcccCcce---------------e--------------------EEeeCCCCCeeEEEECCCCCEEEEe
Q psy12456         67 TAADENCVKLWDLRKLKNF---------------K--------------------TLQLDPNYEIRDLCFDQSGTYMAVA  111 (162)
Q Consensus        67 s~~~d~~v~~wd~~~~~~~---------------~--------------------~~~~~~~~~v~~~~~~~~~~~~~~~  111 (162)
                      ...+|+++++|-++.....               .                    .+.-.|.+-|.+++++.+.+.++++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            7788999999998532110               0                    0001133457889999999988887


Q ss_pred             ccc-EEEEEeCCc-eE--EEE-----eecCcccEEEEEECCCC-ceEEEeecCCeEEEeeC
Q psy12456        112 GTD-VRVFLCKQW-QE--LAM-----FNEHTAMVTGVRFGTHA-HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       112 ~~~-~~i~~~~~~-~~--~~~-----~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iw~~  162 (162)
                      ..- +.+|.+... +.  +.-     ++.-...|++..|+|.. .+|+=.+..|+|++-|+
T Consensus       183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm  243 (433)
T KOG1354|consen  183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM  243 (433)
T ss_pred             cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence            432 445543211 11  111     22334568899999864 56777778999999885

>KOG1275|consensus

Probab=98.95  E-value=1.3e-08  Score=80.50  Aligned_cols=140  Identities=19%  Similarity=0.276  Sum_probs=102.8

Q ss_pred             CCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC---------CCeEEEEEcccCcceeEE
Q psy12456         18 PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD---------ENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        18 ~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---------d~~v~~wd~~~~~~~~~~   88 (162)
                      .+++++.+|...|+|.+-|+++-+.++++.+|.+.|..  |+-.|+.|++++.         |.-|++||+|+++.+...
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI  262 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI  262 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence            35788999999999999999999999999999998875  5557899999976         556899999988766554


Q ss_pred             eeCCCCCeeEEEECCCC-CEEEEeccc--EEEEEeCCc----eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         89 QLDPNYEIRDLCFDQSG-TYMAVAGTD--VRVFLCKQW----QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~-~~~~~~~~~--~~i~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +.+..  ..-+.|.|.- ..+++.+..  ..+.+...+    ..+.++..-...+.++.+|+.++.+|-+..+|.|.+|.
T Consensus       263 ~~~~~--P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  263 QFPYG--PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccC--chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            44322  2335666642 233343333  444442111    23445555566699999999999999999999999994

>KOG4497|consensus

Probab=98.94  E-value=2.2e-08  Score=71.35  Aligned_cols=136  Identities=13%  Similarity=0.183  Sum_probs=93.2

Q ss_pred             EEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEE-eCCCeEEEEEcccCcceeEEeeCC
Q psy12456         14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATA-ADENCVKLWDLRKLKNFKTLQLDP   92 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~d~~v~~wd~~~~~~~~~~~~~~   92 (162)
                      +.|+|+|+++|+.+.- .+.|-|..+-+..+.|.- -+.|.-+-|..|.-+++.+ ..|+.|.+|++...+-..+... .
T Consensus        14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde-g   90 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE-G   90 (447)
T ss_pred             eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc-C
Confidence            5799999999998865 788888776554444432 2467778898887665555 5778999999975443333333 2


Q ss_pred             CCCeeEEEECCCCC-EEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeec
Q psy12456         93 NYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        93 ~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                      ...+...+|||+|+ .+.+...+  +.||.+.+.+. ..+...+..+..++|.|++++.+.+++
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-~~~~~pK~~~kg~~f~~dg~f~ai~sR  153 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-YLLPHPKTNVKGYAFHPDGQFCAILSR  153 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEecccee-EEecccccCceeEEECCCCceeeeeec
Confidence            34688999999995 45555566  45565544322 223334455789999999999887764

>KOG2041|consensus

Probab=98.94  E-value=1.3e-08  Score=79.03  Aligned_cols=153  Identities=12%  Similarity=0.194  Sum_probs=108.0

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee---------------eeeccCCCCCEEEEEEccCCCEEEEEeCC
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN---------------VTDFQLDAGPIQALSFSENGYYLATAADE   71 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~---------------~~~~~~~~~~v~~i~~~~~~~~l~s~~~d   71 (162)
                      ......+++|+.+..++|.|+.||.+++..+.+...               -+++.+|.+.|..+.|+...+.|-+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            445678999999999999999999999998765321               24677899999999999999999999999


Q ss_pred             CeEEEEEcccCcceeE-EeeCCCCCeeEEEECCCCCEEEEecccEEEEEe-CCceEE--EEeecCcccEEEEEECCCCce
Q psy12456         72 NCVKLWDLRKLKNFKT-LQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLC-KQWQEL--AMFNEHTAMVTGVRFGTHAHY  147 (162)
Q Consensus        72 ~~v~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~--~~~~~h~~~v~~~~~s~~~~~  147 (162)
                      |.|.+|-+-+.+=... .+-..+..|.+++|+.+|..++..-.|..|..- -.+..+  +.++  .....++.|++|.+.
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D~~~  170 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSEDLEQ  170 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hheccceeecccHHH
Confidence            9999999865431111 122234568999999999988776655333221 011111  0111  122457889999877


Q ss_pred             EEEeecCCeEEEee
Q psy12456        148 LASSSMDRTLKLYS  161 (162)
Q Consensus       148 l~s~s~D~~i~iw~  161 (162)
                      +.-+-..|.+++||
T Consensus       171 ~Lf~~ange~hlyd  184 (1189)
T KOG2041|consen  171 ALFKKANGETHLYD  184 (1189)
T ss_pred             HHhhhcCCcEEEec
Confidence            66666677788776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=4.8e-07  Score=68.57  Aligned_cols=139  Identities=10%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             EEEEEeCCCCcEEEE-eeCCC--cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CC--eEEEEEcccCcc
Q psy12456         11 LTTAQLHPDGLIFGI-GTSDS--QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-EN--CVKLWDLRKLKN   84 (162)
Q Consensus        11 v~~~~~~~~g~~~a~-g~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~--~v~~wd~~~~~~   84 (162)
                      +....|+|||+.++. ...+|  .|.+||+++++.. .+..+........|+||++.++..+. ++  .|.++|+.+.+.
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            446889999998874 44455  5778899876543 34444444566789999998776654 33  466667655442


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                       ..+..... ......|+|++++++..+.+     +.+++....+. +.+.. ........|+|++++++-.+.+
T Consensus       324 -~~lt~~~~-~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~-~~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        324 -ERVTFVGN-YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD-TSLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             -EEeecCCC-CccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC-CCCCCCceECCCCCEEEEEEec
Confidence             22222111 23456899999998876543     23334443322 22221 1122345899999988766543

>KOG2066|consensus

Probab=98.89  E-value=2.1e-07  Score=72.91  Aligned_cols=150  Identities=14%  Similarity=0.226  Sum_probs=102.4

Q ss_pred             cCCCCCcEEEEEeCCC-------------CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccC-----CCEE
Q psy12456          4 SGAGGPTLTTAQLHPD-------------GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSEN-----GYYL   65 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~-------------g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l   65 (162)
                      .|+|.+.|.-..+...             |+++|+++.||+|.|-.+-+++..+.+.-+ .|+.+|+++|+     .+.+
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~f  132 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQF  132 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhhe
Confidence            4666666655555444             999999999999999999888887777665 58999999997     5688


Q ss_pred             EEEeCCCeEEEEEcc---cCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcc------c
Q psy12456         66 ATAADENCVKLWDLR---KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTA------M  135 (162)
Q Consensus        66 ~s~~~d~~v~~wd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~------~  135 (162)
                      ++|+.-| +.++.=+   +...+  .-.....+|.+++|.  |.++|=++.+ ++||+....+.+..+.....      .
T Consensus       133 v~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~f  207 (846)
T KOG2066|consen  133 VSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELF  207 (846)
T ss_pred             eecCcce-EEEehhhhhcCccce--eeecCccceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccC
Confidence            9999888 6666532   11222  112234679999986  6788888776 88998766555544432222      2


Q ss_pred             EEEEEECCCCceEEEeecCCeEEEee
Q psy12456        136 VTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       136 v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      -.++.|.++.+.++  |+--+|++..
T Consensus       208 pphl~W~~~~~LVI--GW~d~v~i~~  231 (846)
T KOG2066|consen  208 PPHLHWQDEDRLVI--GWGDSVKICS  231 (846)
T ss_pred             CCceEecCCCeEEE--ecCCeEEEEE
Confidence            34566776665554  4555566543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.88  E-value=9.9e-07  Score=73.45  Aligned_cols=150  Identities=9%  Similarity=0.115  Sum_probs=97.7

Q ss_pred             EEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCC---------------CCCEEEEEEccCCCEE-EEEeCCCeE
Q psy12456         12 TTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLD---------------AGPIQALSFSENGYYL-ATAADENCV   74 (162)
Q Consensus        12 ~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~---------------~~~v~~i~~~~~~~~l-~s~~~d~~v   74 (162)
                      ..++++| ++.++++...++.|++||...+... .+.+.               -.....|+++|++.+| ++-..++.|
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I  764 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI  764 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence            5789999 6778888888999999998766432 22110               1234579999998844 455567899


Q ss_pred             EEEEcccCcceeEE-----------eeC-C--------CCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe---
Q psy12456         75 KLWDLRKLKNFKTL-----------QLD-P--------NYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF---  129 (162)
Q Consensus        75 ~~wd~~~~~~~~~~-----------~~~-~--------~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~---  129 (162)
                      ++||+.+.......           ... .        ......++++++|..+++-..+  +++++..........   
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G  844 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTG  844 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccC
Confidence            99998754321000           000 0        0123578899999876666555  566665444322111   


Q ss_pred             ----------ecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        130 ----------NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       130 ----------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                                .+.-....+++++++++.+++-+.++.|++||+
T Consensus       845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence                      111234678999999999999999999999985

>KOG1409|consensus

Probab=98.88  E-value=1.3e-08  Score=72.63  Aligned_cols=159  Identities=19%  Similarity=0.304  Sum_probs=105.7

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      ...+...++++.|.|...++.+|..|..+.+||+-.++ ....+.+|...|..++.-+--+.+.+++.|+.|.+||.+..
T Consensus       193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence            34677889999999999999999999999999996543 34566788888988888888889999999999999998632


Q ss_pred             cce-eEEe----------------------------eCC----CCCeeEEEECCCCCEEEEec-ccEEEEEe-----CC-
Q psy12456         83 KNF-KTLQ----------------------------LDP----NYEIRDLCFDQSGTYMAVAG-TDVRVFLC-----KQ-  122 (162)
Q Consensus        83 ~~~-~~~~----------------------------~~~----~~~v~~~~~~~~~~~~~~~~-~~~~i~~~-----~~-  122 (162)
                      ... ..+.                            .|+    ...+...|-+....+...|. .++|+.+.     .. 
T Consensus       273 r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~  352 (404)
T KOG1409|consen  273 RVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDE  352 (404)
T ss_pred             eecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcC
Confidence            211 0000                            000    11122333333333333332 12454431     01 


Q ss_pred             -ceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        123 -WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       123 -~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                       ..++..+.+-...|+++.+-.+-.+|+|+|.|+-|+|||+
T Consensus       353 ~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~  393 (404)
T KOG1409|consen  353 ERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDV  393 (404)
T ss_pred             CCCccccccccccceeEEEhhhhccceeecCCceEEEEEec
Confidence             1223444433445899988877778999999999999995

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.87  E-value=1.9e-07  Score=76.51  Aligned_cols=156  Identities=16%  Similarity=0.207  Sum_probs=100.3

Q ss_pred             ccCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECC---------------C--------CeeeeeccC-----------
Q psy12456          3 ASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK---------------K--------QKNVTDFQL-----------   48 (162)
Q Consensus         3 ~~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~---------------~--------~~~~~~~~~-----------   48 (162)
                      ..|.-..+|.+++||||+.++|..+.+|++.+.+-+               .        |+....|++           
T Consensus       115 ~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~  194 (928)
T PF04762_consen  115 IVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLR  194 (928)
T ss_pred             EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhcc
Confidence            345667899999999999999999999999887532               0        011111111           


Q ss_pred             -------------CCCCEEEEEEccCCCEEEEEeC---C---CeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEE
Q psy12456         49 -------------DAGPIQALSFSENGYYLATAAD---E---NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMA  109 (162)
Q Consensus        49 -------------~~~~v~~i~~~~~~~~l~s~~~---d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  109 (162)
                                   .+..-..|+|..||.++++.+.   .   ..+++|+=. .+....-+ ....--.+++|.|.|.++|
T Consensus       195 ~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~lIA  272 (928)
T PF04762_consen  195 DPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGNLIA  272 (928)
T ss_pred             CCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCCEEE
Confidence                         1112346899999999999875   2   468888743 22111111 1122235789999999999


Q ss_pred             Eecc---cEEEEEeC-CceEEEEe----ecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        110 VAGT---DVRVFLCK-QWQELAMF----NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       110 ~~~~---~~~i~~~~-~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +.-.   ...|..+. .+-.-.+|    ......|..+.|++++..||..-.|. |.+|.
T Consensus       273 ~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt  331 (928)
T PF04762_consen  273 SSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT  331 (928)
T ss_pred             EEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence            8754   12232222 22222222    24456799999999999999877666 99995

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.86  E-value=5.4e-07  Score=68.74  Aligned_cols=137  Identities=12%  Similarity=0.119  Sum_probs=82.1

Q ss_pred             EEEEeCCCCcEEEE-eeCCCc--EEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CC--eEEEEEcccCcce
Q psy12456         12 TTAQLHPDGLIFGI-GTSDSQ--VQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-EN--CVKLWDLRKLKNF   85 (162)
Q Consensus        12 ~~~~~~~~g~~~a~-g~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~--~v~~wd~~~~~~~   85 (162)
                      ...+|+|||+.++. ...+|.  |.++|+++++. ..+..+.......+|+||+++++..+. ++  .|.++|+.+.+. 
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-  342 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-  342 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence            46789999997765 455665  77778877654 334444445567899999998876654 34  455566654432 


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEeec
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                      ..+..... .....+|+|+|++++..+.+   .+|+..  ...+. ..+.... ......|+|+++.++-.+.
T Consensus       343 ~~Lt~~g~-~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~-~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        343 SRLTFEGE-QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR-LDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             EEEecCCC-CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCC-CCCCceECCCCCEEEEEEe
Confidence            22222222 23446899999998886543   345443  33322 2222221 1223479999998865544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.85  E-value=9.5e-07  Score=65.95  Aligned_cols=139  Identities=18%  Similarity=0.177  Sum_probs=99.3

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCC-cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDS-QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg-~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      +...|....+.-+++-++.|..|| .+.|+|.++++. ..+...-+.|.++..+|+|++++.++....+.+.|+.+.+..
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~  436 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR  436 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence            345577788888888899999999 899999987764 345556688999999999999999999889999999875532


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc------EEEEEeCCceEEEEeecCcccEEEEEECCCCceE
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD------VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  148 (162)
                       ...-....-|....|+|+++++|-+..+      +++++....+... .......=.+-+|.|++++|
T Consensus       437 -~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~DfsPaFD~d~ryL  503 (668)
T COG4946         437 -LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAYDFSPAFDPDGRYL  503 (668)
T ss_pred             -EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE-ecCCcccccCcccCCCCcEE
Confidence             2211223458999999999999998764      5666655433322 12222222345677788754

>KOG1409|consensus

Probab=98.83  E-value=6e-07  Score=64.34  Aligned_cols=152  Identities=15%  Similarity=0.214  Sum_probs=107.1

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECC----CCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK----KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      -..++++..++++...|.+|-.+|++.-+.+.    +....+.+..|..++..+-|+....++++.+.|+.+.-=-.+..
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~  146 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG  146 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence            34678999999999999999999999988664    34566777889999999999999999999999986543222333


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEE----EeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEE
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVF----LCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      +.+..+......  .++.+.-.  +.-.|....++-    .......+..+.+|...+.+++|.|..+.+.++..|..+.
T Consensus       147 ~~lg~Y~~~~~~--t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi  222 (404)
T KOG1409|consen  147 NRLGGYNFETPA--SALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI  222 (404)
T ss_pred             CcccceEeeccC--CCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence            333333221111  11111111  223333322222    1233467888999999999999999999999999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      +||+
T Consensus       223 ~wdi  226 (404)
T KOG1409|consen  223 MWDI  226 (404)
T ss_pred             EEec
Confidence            9996

>KOG0309|consensus

Probab=98.83  E-value=1e-08  Score=79.59  Aligned_cols=151  Identities=17%  Similarity=0.335  Sum_probs=105.4

Q ss_pred             EEEEEeCC-CCcEEEEeeCCCcEEEEECCCC-eeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456         11 LTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ-KNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        11 v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      -+.++|+. ++..+| .+....|++||++.+ .+++.++.|...|..++|+. .-..+.+.+.|++|++||..+......
T Consensus       161 asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~  239 (1081)
T KOG0309|consen  161 ASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK  239 (1081)
T ss_pred             CceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence            35678886 555565 455677999999986 67889999988999999976 334688899999999999976554444


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEE---eccc-EEEEEeC----------CceEEEEeecCcccEEEEEECCCC--------
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAV---AGTD-VRVFLCK----------QWQELAMFNEHTAMVTGVRFGTHA--------  145 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~---~~~~-~~i~~~~----------~~~~~~~~~~h~~~v~~~~~s~~~--------  145 (162)
                      ......+++..-++-|-|+-...   .+.+ +.++.++          ...++..|.+|+..|....|-..+        
T Consensus       240 ~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~  319 (1081)
T KOG0309|consen  240 RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDS  319 (1081)
T ss_pred             eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCc
Confidence            33444556666677775542222   1122 2222221          235788999999998887775332        


Q ss_pred             --ceEEEeecCCeEEEeeC
Q psy12456        146 --HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       146 --~~l~s~s~D~~i~iw~~  162 (162)
                        -.|+|-|.|.++|+|-+
T Consensus       320 rdfQLVTWSkD~~lrlWpI  338 (1081)
T KOG0309|consen  320 RDFQLVTWSKDQTLRLWPI  338 (1081)
T ss_pred             cceeEEEeecCCceEeeec
Confidence              26899999999999964

>KOG2315|consensus

Probab=98.81  E-value=2.7e-07  Score=69.59  Aligned_cols=109  Identities=21%  Similarity=0.379  Sum_probs=85.7

Q ss_pred             CCCCcEEEEEeCCCCcEEE--EeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC---CeEEEEEcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFG--IGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE---NCVKLWDLR   80 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a--~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---~~v~~wd~~   80 (162)
                      ....+|.++.|+|+|+-|+  .|.+=-++.|||++ ++++..|.  .++=.++-|+|.|++++.++.+   |.|.+||..
T Consensus       268 ~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  268 LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            4578899999999998664  46667889999986 67887775  3566788999999999998764   689999999


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--------EEEEEe
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--------VRVFLC  120 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~i~~~  120 (162)
                      +.+.+.++...   .-+-+.|+|+|++++++.+.        ++||.+
T Consensus       345 n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  345 NRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             chhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            87777766542   23557999999999998753        566665

>KOG4714|consensus

Probab=98.78  E-value=3.6e-08  Score=68.09  Aligned_cols=73  Identities=23%  Similarity=0.377  Sum_probs=63.1

Q ss_pred             CcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCe-eeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEccc
Q psy12456          9 PTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQK-NVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         9 ~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      ..|+++.-|| +..++++|+.||.+.+||.|... +...+++|+.+|.-+-|+| ++..|+++++||.+.-||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            3489999999 77789999999999999999864 4456788999999999999 677899999999999999753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.77  E-value=5.3e-06  Score=62.13  Aligned_cols=142  Identities=10%  Similarity=0.119  Sum_probs=101.5

Q ss_pred             eCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCC-eEEEEEcccCcceeEEeeCCC
Q psy12456         16 LHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADEN-CVKLWDLRKLKNFKTLQLDPN   93 (162)
Q Consensus        16 ~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~-~v~~wd~~~~~~~~~~~~~~~   93 (162)
                      |++ +|.++|..+. |+..|.+...+-.++.  .|.+.|+-..+..+++-++.|..|+ .+-+||.+..+. ..+.. .-
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~-~l  401 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEK-DL  401 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeC-Cc
Confidence            443 7888888886 6777777655544332  3566788888887888899999998 899999986542 33322 33


Q ss_pred             CCeeEEEECCCCCEEEEecccEEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEeec----CCeEEEeeC
Q psy12456         94 YEIRDLCFDQSGTYMAVAGTDVRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSM----DRTLKLYSL  162 (162)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iw~~  162 (162)
                      ..|.++..+|+|++++++.....+|..  .+......-+...+.|+...|+|+++++|=+--    ...|+++|+
T Consensus       402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm  476 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM  476 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec
Confidence            468999999999999999888776654  344332222334567999999999999986644    356888774

>KOG1240|consensus

Probab=98.77  E-value=7.5e-07  Score=72.78  Aligned_cols=144  Identities=13%  Similarity=0.176  Sum_probs=99.4

Q ss_pred             CCc-EEEEeeCCCcEEEEECCCCeeeeeccC--CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCC
Q psy12456         19 DGL-IFGIGTSDSQVQIWDLKKQKNVTDFQL--DAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYE   95 (162)
Q Consensus        19 ~g~-~~a~g~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~   95 (162)
                      ++. .++.+...+.+..||+++......++.  ..+.|++++.+|.++++++|...|.+.+||+|=...+..+......+
T Consensus      1161 ~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~ 1240 (1431)
T KOG1240|consen 1161 VQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAP 1240 (1431)
T ss_pred             ccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCC
Confidence            444 788888889999999998766655553  34789999999999999999999999999998656667776655667


Q ss_pred             eeEEEECCC---CCEEEEecc----cEEEEEeCCceEEEEeec--------C-----------cccEEEEEECCCCceEE
Q psy12456         96 IRDLCFDQS---GTYMAVAGT----DVRVFLCKQWQELAMFNE--------H-----------TAMVTGVRFGTHAHYLA  149 (162)
Q Consensus        96 v~~~~~~~~---~~~~~~~~~----~~~i~~~~~~~~~~~~~~--------h-----------~~~v~~~~~s~~~~~l~  149 (162)
                      ++.++.+|.   ..+.++++.    .+.+|+...+.....+..        +           .-......+...+.++.
T Consensus      1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~l 1320 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLL 1320 (1431)
T ss_pred             cceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceee
Confidence            887777764   345555544    266676544322222111        1           11112222333456888


Q ss_pred             EeecCCeEEEeeC
Q psy12456        150 SSSMDRTLKLYSL  162 (162)
Q Consensus       150 s~s~D~~i~iw~~  162 (162)
                      +|+.|..||.||.
T Consensus      1321 tggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1321 TGGSDMKIRKWDP 1333 (1431)
T ss_pred             ecCCccceeeccC
Confidence            9999999999984

>KOG1334|consensus

Probab=98.77  E-value=6.9e-08  Score=71.74  Aligned_cols=156  Identities=15%  Similarity=0.203  Sum_probs=110.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc-CCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEEcccC
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ-LDAGPIQALSFSE--NGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      .+..-|+.+-|+..|.++++|+.|.+|.+||..++++...|. +|...|..-.|-|  +...+++++.||.+++=.+-..
T Consensus       140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t  219 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET  219 (559)
T ss_pred             CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence            456678899999999999999999999999999998887776 6777777777877  4568999999999998766432


Q ss_pred             ccee--EEeeCCCCCeeEEEECCCC-CEEEEecccEEEEE--eCCc--eEEEEeec-Ccc---cEEEEEECCCCc-eEEE
Q psy12456         83 KNFK--TLQLDPNYEIRDLCFDQSG-TYMAVAGTDVRVFL--CKQW--QELAMFNE-HTA---MVTGVRFGTHAH-YLAS  150 (162)
Q Consensus        83 ~~~~--~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~i~~--~~~~--~~~~~~~~-h~~---~v~~~~~s~~~~-~l~s  150 (162)
                      ..+.  +....+..++..++..|+. ..|.+++.|..++.  ++..  ........ +..   ...+++..|... .++.
T Consensus       220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV  299 (559)
T KOG1334|consen  220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV  299 (559)
T ss_pred             cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence            2221  1223345678889998875 45667777754443  3222  11112222 333   456777777665 7899


Q ss_pred             eecCCeEEEee
Q psy12456        151 SSMDRTLKLYS  161 (162)
Q Consensus       151 ~s~D~~i~iw~  161 (162)
                      ++.|.-+++||
T Consensus       300 gG~dqf~RvYD  310 (559)
T KOG1334|consen  300 GGSDQFARVYD  310 (559)
T ss_pred             CChhhhhhhhc
Confidence            99999999887

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.77  E-value=1.4e-07  Score=71.68  Aligned_cols=72  Identities=8%  Similarity=0.186  Sum_probs=59.5

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      -...|.+++++|+...++.|+.||.|.+||..++..... + ..-....++|+|+|..+++|+..|.+.+||+.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k-a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K-AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e-ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            356789999999999999999999999999876633222 2 22345679999999999999999999999985

>KOG3914|consensus

Probab=98.77  E-value=2.3e-08  Score=72.39  Aligned_cols=82  Identities=17%  Similarity=0.312  Sum_probs=68.7

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc-CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ-LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      |-..++.++++||++.+.++..|++||+-.+...-.+.+|- +|..-|..++.-++ ..|++++.|+++++||+++.+.+
T Consensus       150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence            44568999999999999999999999998777666666665 59999999998765 45899999999999999988776


Q ss_pred             eEEe
Q psy12456         86 KTLQ   89 (162)
Q Consensus        86 ~~~~   89 (162)
                      ..+.
T Consensus       229 ~t~d  232 (390)
T KOG3914|consen  229 DTCD  232 (390)
T ss_pred             cccc
Confidence            5443

>KOG2695|consensus

Probab=98.73  E-value=4.2e-08  Score=70.18  Aligned_cols=134  Identities=14%  Similarity=0.150  Sum_probs=93.7

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-----eeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEccc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-----KNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      ..-|-+++|+-.++++..|+.+|.|...|+|.+     .+...+ -|...|++++.-. ++++|.+.+.+|+|++||+|.
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            445667788888999999999999999999875     222222 2667788887665 788899999999999999997


Q ss_pred             Ccc---eeEEeeCCCC-CeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeec----CcccEEEEEEC
Q psy12456         82 LKN---FKTLQLDPNY-EIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE----HTAMVTGVRFG  142 (162)
Q Consensus        82 ~~~---~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~----h~~~v~~~~~s  142 (162)
                      .++   +..+..|-.. .-..+-..+....+++++.|  .+||..+..+.+.++.-    -...+..++|.
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence            665   6666554321 11223455666788888888  78998887766655432    22234556553

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1.8e-05  Score=57.14  Aligned_cols=152  Identities=13%  Similarity=0.270  Sum_probs=101.8

Q ss_pred             CcEEEEEeCCCCcEEEEeeC-CCcEEEEECCCCeeee----eccCCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcccC
Q psy12456          9 PTLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQKNVT----DFQLDAGPIQALSFSENGYYLATAA-DENCVKLWDLRKL   82 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~s~~-~d~~v~~wd~~~~   82 (162)
                      +-+-.+.+.|+++++++.+- -.+|.+|++..++...    .++ ....-+.|.|+|++++....+ .+++|.+|...+.
T Consensus       145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             CccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            33778899999998877665 3569999998765432    222 233457899999999876665 4889999998753


Q ss_pred             -cceeEEee--------CCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCc----eEEEEeecCcccEEEEEECCCCc
Q psy12456         83 -KNFKTLQL--------DPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQW----QELAMFNEHTAMVTGVRFGTHAH  146 (162)
Q Consensus        83 -~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~  146 (162)
                       ..+..++.        ........+.++|+|++|.++...   +.++.....    ..+.....+...-....|+|.++
T Consensus       224 ~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~  303 (346)
T COG2706         224 VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR  303 (346)
T ss_pred             CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC
Confidence             12222221        122346788999999999887654   444444322    22333445555567888999999


Q ss_pred             eEEEeecCC-eEEEee
Q psy12456        147 YLASSSMDR-TLKLYS  161 (162)
Q Consensus       147 ~l~s~s~D~-~i~iw~  161 (162)
                      +|+.+..|. +|.+|.
T Consensus       304 ~Liaa~q~sd~i~vf~  319 (346)
T COG2706         304 FLIAANQKSDNITVFE  319 (346)
T ss_pred             EEEEEccCCCcEEEEE
Confidence            998887654 577664

>KOG1354|consensus

Probab=98.72  E-value=4.8e-07  Score=64.94  Aligned_cols=157  Identities=15%  Similarity=0.295  Sum_probs=111.0

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee---eeeccCC-----CCCEEEEEEccC-CCEEEEEeCCCeE
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN---VTDFQLD-----AGPIQALSFSEN-GYYLATAADENCV   74 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~---~~~~~~~-----~~~v~~i~~~~~-~~~l~s~~~d~~v   74 (162)
                      ..+|.+-|+++.++.|+..+.++. |=.|-+|++.-...   +-.++.+     ..-|++..|+|. .+.++..+..|+|
T Consensus       160 aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI  238 (433)
T KOG1354|consen  160 ANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI  238 (433)
T ss_pred             cccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence            357888999999999999887654 67899999874322   1122222     134778889994 6778888889999


Q ss_pred             EEEEcccCcc----eeEEee--C---------CCCCeeEEEECCCCCEEEEeccc-EEEEEeC-CceEEEEeecCcc---
Q psy12456         75 KLWDLRKLKN----FKTLQL--D---------PNYEIRDLCFDQSGTYMAVAGTD-VRVFLCK-QWQELAMFNEHTA---  134 (162)
Q Consensus        75 ~~wd~~~~~~----~~~~~~--~---------~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~-~~~~~~~~~~h~~---  134 (162)
                      ++-|+|....    ...+..  .         ....|.++.|+++|.|+++-+.. +++|+.. ..+++..+.-|..   
T Consensus       239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~  318 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRS  318 (433)
T ss_pred             EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHH
Confidence            9999984221    011110  0         11247899999999999998865 8999873 3455666655532   


Q ss_pred             ---------cE---EEEEECCCCceEEEeecCCeEEEee
Q psy12456        135 ---------MV---TGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       135 ---------~v---~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                               .|   ..+.|+-++.+++|||.....++++
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence                     22   4478998888999999999999886

>KOG0309|consensus

Probab=98.71  E-value=5.4e-08  Score=75.76  Aligned_cols=150  Identities=21%  Similarity=0.296  Sum_probs=109.1

Q ss_pred             EEEEEeCC--CCcEEEEeeCCCcEEEEECCCC---eeeeeccCCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcccCcc
Q psy12456         11 LTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQ---KNVTDFQLDAGPIQALSFSEN-GYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus        11 v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      |..++|+|  .-.+.++......-.+|++...   .....+.+|...|+.+.|+|. -..+++++.|-.+..||++....
T Consensus        70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~  149 (1081)
T KOG0309|consen   70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR  149 (1081)
T ss_pred             hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence            34455654  5667888888889999998653   334456688889999999985 45789999999999999986542


Q ss_pred             -eeEEeeCCCCCeeEEEECC-CCCEEEEecc-cEEEEEeCCc-eEEEEeecCcccEEEEEECCC-CceEEEeecCCeEEE
Q psy12456         85 -FKTLQLDPNYEIRDLCFDQ-SGTYMAVAGT-DVRVFLCKQW-QELAMFNEHTAMVTGVRFGTH-AHYLASSSMDRTLKL  159 (162)
Q Consensus        85 -~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~-~~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~D~~i~i  159 (162)
                       +..+..- ......+.|+- ++..+++... ++.+|+.+.+ .++..+++|...|..+.|... -..+.+.+.|++|++
T Consensus       150 p~ys~~~w-~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf  228 (1081)
T KOG0309|consen  150 PFYSTSSW-RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF  228 (1081)
T ss_pred             ceeeeecc-cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence             3333221 22356788885 5556665544 4888887654 567778889999999999743 346678999999999


Q ss_pred             ee
Q psy12456        160 YS  161 (162)
Q Consensus       160 w~  161 (162)
                      ||
T Consensus       229 w~  230 (1081)
T KOG0309|consen  229 WD  230 (1081)
T ss_pred             ec
Confidence            98

>KOG4532|consensus

Probab=98.69  E-value=3.4e-06  Score=58.87  Aligned_cols=138  Identities=14%  Similarity=0.150  Sum_probs=91.5

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCC-eee-eeccCC-CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc---
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-KNV-TDFQLD-AGPIQALSFSENGYYLATAADENCVKLWDLRKLKN---   84 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-~~~-~~~~~~-~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~---   84 (162)
                      .+.+.+++|++++++.+....|..|.+... +.+ ....+. ...=.+.+|+.....+|++..||++.+||+|....   
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            788999999999999999999999988653 322 222221 12235679999999999999999999999986543   


Q ss_pred             -eeEEeeCCCCCeeEEEECCCCC---EEEEecc-cEEEEEeCCceEEEE-------eecCc-ccEEEEEECCCCceE
Q psy12456         85 -FKTLQLDPNYEIRDLCFDQSGT---YMAVAGT-DVRVFLCKQWQELAM-------FNEHT-AMVTGVRFGTHAHYL  148 (162)
Q Consensus        85 -~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~-~~~i~~~~~~~~~~~-------~~~h~-~~v~~~~~s~~~~~l  148 (162)
                       ....+.++...++.+.|++.|.   ++.+-.. -.++.+.+.....+.       +..|. ..+.+..|+.++...
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~  317 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESN  317 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccc
Confidence             2233456777899999997653   3333322 266666655432211       11222 336666776555433

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.67  E-value=2.3e-05  Score=59.37  Aligned_cols=138  Identities=13%  Similarity=0.074  Sum_probs=82.0

Q ss_pred             cEEEEEeCCCCcE-EEEeeCC---CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEE-eCC--CeEEEEEcccC
Q psy12456         10 TLTTAQLHPDGLI-FGIGTSD---SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATA-ADE--NCVKLWDLRKL   82 (162)
Q Consensus        10 ~v~~~~~~~~g~~-~a~g~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~d--~~v~~wd~~~~   82 (162)
                      ....-.|+|||+. ++..+..   ..|.++|+.+++...-.. ..+.....+|+|||+.++.. +.+  ..|.++|+...
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            5567899999983 6654433   458889998876544333 34456667899999877654 333  46777787654


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEE--eCCceEEEEeecCcccEEEEEECCCCceEEEeec
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFL--CKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                      +. ..+..... ......|+|+|+.++-.+..   ..||.  ....+..+... ....  ...|||++++++-.+.
T Consensus       268 ~~-~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        268 TL-TQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSR  338 (419)
T ss_pred             cE-EEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEc
Confidence            42 22221111 12345799999887776643   24443  33333322211 1111  2489999998876554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.67  E-value=2.8e-05  Score=56.15  Aligned_cols=153  Identities=16%  Similarity=0.301  Sum_probs=98.8

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeC-CCcEEEEECCCC-ee---eeeccCCCCC----------EEEEEEccCCCEEEEEeC-
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQ-KN---VTDFQLDAGP----------IQALSFSENGYYLATAAD-   70 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~-~~---~~~~~~~~~~----------v~~i~~~~~~~~l~s~~~-   70 (162)
                      .+.+-+.++++++|+++.++.. .|.|.++-++.. ..   +..+ .|.++          +....+.|++++|++.+. 
T Consensus        87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG  165 (346)
T COG2706          87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG  165 (346)
T ss_pred             CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence            3445588999999988777766 589999998763 22   1222 23333          778899999999999863 


Q ss_pred             CCeEEEEEcccCcc--eeEEeeCCCCCeeEEEECCCCCEEEEecc---cEEEEEeCCc-eEEEEeec---------Cccc
Q psy12456         71 ENCVKLWDLRKLKN--FKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQW-QELAMFNE---------HTAM  135 (162)
Q Consensus        71 d~~v~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~~-~~~~~~~~---------h~~~  135 (162)
                      --.|.+|++...+.  .......+....+.+.|+|++++.-+...   .+.+|.++.. ..+..++.         -..+
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~  245 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW  245 (346)
T ss_pred             CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence            23589999874432  22222344455789999999998766543   3667766542 22222221         2345


Q ss_pred             EEEEEECCCCceEEEeec-CCeEEEe
Q psy12456        136 VTGVRFGTHAHYLASSSM-DRTLKLY  160 (162)
Q Consensus       136 v~~~~~s~~~~~l~s~s~-D~~i~iw  160 (162)
                      ..++..+|+|++|-.+.+ ...|-+|
T Consensus       246 ~aaIhis~dGrFLYasNRg~dsI~~f  271 (346)
T COG2706         246 AAAIHISPDGRFLYASNRGHDSIAVF  271 (346)
T ss_pred             eeEEEECCCCCEEEEecCCCCeEEEE
Confidence            778889999999865532 2244444

>KOG1064|consensus

Probab=98.65  E-value=6e-08  Score=81.56  Aligned_cols=143  Identities=22%  Similarity=0.334  Sum_probs=104.3

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe---CCCeEEEEEcccCc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA---DENCVKLWDLRKLK   83 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~---~d~~v~~wd~~~~~   83 (162)
                      +...|+.+.|+.+|+-++.+..||.+.+|... .++....+-|........|-.  ..+++++   .++.+.+||.-...
T Consensus      2250 g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2250 GNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred             CcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc
Confidence            34788999999999999999999999999976 678888888887777777754  5566664   46789999964322


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEecccE--EEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDV--RVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ......-.|...++++++-|..+.+++|+.+.  .+|+.+.-+.+     |..+.    +. ...+|++++..|.++||+
T Consensus      2327 ~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~-----h~~~~----~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2327 MNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR-----HTFQA----LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             ccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH-----HHhhh----hh-hhheeeccCcccceEEEE
Confidence            11111123455689999999999999999874  55554433333     32222    33 567899999999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus      2397 ~ 2397 (2439)
T KOG1064|consen 2397 L 2397 (2439)
T ss_pred             c
Confidence            5

>KOG2066|consensus

Probab=98.56  E-value=2e-06  Score=67.64  Aligned_cols=137  Identities=15%  Similarity=0.283  Sum_probs=93.8

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEe
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~   89 (162)
                      .++++++|  ++.|+.|+-+|.|.+++... .+ .+.-.|...      ..+|.++++|+.||++.+-.+.+.+....+.
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d  110 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD  110 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence            34555666  57899999999999998653 33 222223322      5689999999999999998887666555444


Q ss_pred             eCCCCCeeEEEECCC-----CCEEEEecccEEEEEeCCc----eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         90 LDPNYEIRDLCFDQS-----GTYMAVAGTDVRVFLCKQW----QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        90 ~~~~~~v~~~~~~~~-----~~~~~~~~~~~~i~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      .  ..++.+++++|+     .+.+++|+....+..-+.|    ..+ ....-.++|.+++|.  |.++|=++.+| |++|
T Consensus       111 f--~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy  184 (846)
T KOG2066|consen  111 F--KRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY  184 (846)
T ss_pred             c--CCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence            3  346899999997     4567777666422222222    222 356677899999994  88887776666 7888


Q ss_pred             eC
Q psy12456        161 SL  162 (162)
Q Consensus       161 ~~  162 (162)
                      |+
T Consensus       185 d~  186 (846)
T KOG2066|consen  185 DT  186 (846)
T ss_pred             ec
Confidence            74

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.55  E-value=0.00012  Score=53.96  Aligned_cols=152  Identities=14%  Similarity=0.116  Sum_probs=94.6

Q ss_pred             CcEEEEEeCCCCcEEEEee-C-CCcEEEEECCCCeeeeeccCCCCC-------------------------------EEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGT-S-DSQVQIWDLKKQKNVTDFQLDAGP-------------------------------IQA   55 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~-~-dg~i~~wd~~~~~~~~~~~~~~~~-------------------------------v~~   55 (162)
                      ......+++|||+++.+.. . +..|.+.|+.+++.+.++......                               +..
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence            3345788999999887655 4 789999999988765544321100                               001


Q ss_pred             EE--------------Ecc-CCCEEEEEeCCCeEEEEEcccCc-----ceeEEeeC------CCCCeeEEEECCCCCEEE
Q psy12456         56 LS--------------FSE-NGYYLATAADENCVKLWDLRKLK-----NFKTLQLD------PNYEIRDLCFDQSGTYMA  109 (162)
Q Consensus        56 i~--------------~~~-~~~~l~s~~~d~~v~~wd~~~~~-----~~~~~~~~------~~~~v~~~~~~~~~~~~~  109 (162)
                      ..              |.+ +++++..... |+|.+-|+....     ....+...      .......++++|+++.+.
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence            11              122 5666655555 888888853321     11111111      011234589999988777


Q ss_pred             Eec------------ccEEEEEeCCceEEEEeecCcccEEEEEECCCCc-eEEEee-cCCeEEEeeC
Q psy12456        110 VAG------------TDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH-YLASSS-MDRTLKLYSL  162 (162)
Q Consensus       110 ~~~------------~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s-~D~~i~iw~~  162 (162)
                      +..            ..+.+++..+.+.+..+.- ...+.+++++||++ +|.... .++.|.+.|.
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            632            2366667777888877663 34689999999999 776554 5788998874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4532|consensus

Probab=98.55  E-value=7.6e-06  Score=57.17  Aligned_cols=141  Identities=12%  Similarity=0.161  Sum_probs=88.6

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeee-eeccCCCCCEEEEE-EccCCCEEEEEeCCCeEEEEEcccCcceeEEeeC-CCCCe
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALS-FSENGYYLATAADENCVKLWDLRKLKNFKTLQLD-PNYEI   96 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~i~-~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~-~~~~v   96 (162)
                      .-+||.|+..|+..+|...+.+.. +....|...|.-+. .+...-.+..++.|.++++.++.-...  .+..+ +....
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~--~~~~h~~~~~~  161 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN--KFAVHNQNLTQ  161 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc--cceeeccccce
Confidence            347899999999999999865432 22233332221110 111234577789999999988753221  11222 21347


Q ss_pred             eEEEECCCCCEEEEecccEEEEEe--CC-ceEEEE--eecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         97 RDLCFDQSGTYMAVAGTDVRVFLC--KQ-WQELAM--FNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~~--~~-~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .++.++++++++++.+..-+|+.+  .. .+.+..  ....+..=...+|+.....+|.+..||++.|||+
T Consensus       162 ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV  232 (344)
T KOG4532|consen  162 NSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV  232 (344)
T ss_pred             eeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence            889999999999998776555543  22 222211  1222333445678988899999999999999996

>KOG4640|consensus

Probab=98.54  E-value=1.1e-06  Score=67.43  Aligned_cols=95  Identities=14%  Similarity=0.243  Sum_probs=78.8

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEE-EEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQ-ALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      +..|--+.|+|.-.++|.+..+|++.+.-++ -+.+.+++.|..+++ +++|.|||+.|+.|-.||+|++-|..+...+.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4667889999999999999999999999887 567788887777777 99999999999999999999999998877666


Q ss_pred             EEeeCCCCCeeEEEECC
Q psy12456         87 TLQLDPNYEIRDLCFDQ  103 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~  103 (162)
                      .+......+|.+.-|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            64333444577777753

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.53  E-value=2.6e-05  Score=59.10  Aligned_cols=137  Identities=9%  Similarity=0.112  Sum_probs=78.7

Q ss_pred             cEEEEEeCCCCcEEEEeeC-C--CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CC--eEEEEEcccCc
Q psy12456         10 TLTTAQLHPDGLIFGIGTS-D--SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-EN--CVKLWDLRKLK   83 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~-d--g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~--~v~~wd~~~~~   83 (162)
                      .....+|+|||+.++.... +  ..|.++|+.+++.. .+..+......-.|+|||+.|+-.+. .+  .|.+.|+...+
T Consensus       234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~  312 (419)
T PRK04043        234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS  312 (419)
T ss_pred             cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            3456789999986654432 3  45777788776543 34333322334579999987777664 33  56666776543


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc---------EEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEee
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---------VRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                      ..+ .......   ...|+|+|++++.....         .+++..  ...+ .+.+... .......|+|||+.++-.+
T Consensus       313 ~~r-lt~~g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~  386 (419)
T PRK04043        313 VEQ-VVFHGKN---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-IRRLTAN-GVNQFPRFSSDGGSIMFIK  386 (419)
T ss_pred             eEe-CccCCCc---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-eEECCCC-CCcCCeEECCCCCEEEEEE
Confidence            322 2111111   24899999988776532         244443  3332 2333322 2233578999999776544


Q ss_pred             c
Q psy12456        153 M  153 (162)
Q Consensus       153 ~  153 (162)
                      .
T Consensus       387 ~  387 (419)
T PRK04043        387 Y  387 (419)
T ss_pred             c
Confidence            3

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.53  E-value=2e-05  Score=64.95  Aligned_cols=149  Identities=14%  Similarity=0.230  Sum_probs=94.1

Q ss_pred             cEEEEEeCCCCcEEEEeeC---C---CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC---CCeEEEEEcc
Q psy12456         10 TLTTAQLHPDGLIFGIGTS---D---SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD---ENCVKLWDLR   80 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~---d---g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---d~~v~~wd~~   80 (162)
                      .-..+.|-.||++||+.+.   +   ..+|||+ |.|+...+-+.-.+--.+++|.|.|+++++.-.   ...|.+|.= 
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-  288 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-  288 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-
Confidence            4567889999999999986   3   4699998 456654443322333446799999999998864   345666663 


Q ss_pred             cCcceeEEeeC---CCCCeeEEEECCCCCEEEEeccc-EEEEEeCCce----EEEEeecCcccEEEEEECCCC-ceEEEe
Q psy12456         81 KLKNFKTLQLD---PNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQ----ELAMFNEHTAMVTGVRFGTHA-HYLASS  151 (162)
Q Consensus        81 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~----~~~~~~~h~~~v~~~~~s~~~-~~l~s~  151 (162)
                      +.-....|...   ....+..+.|++++..||..-.+ +.+|......    ..-.+... ..+..+.|+|.. ..|...
T Consensus       289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~v~  367 (928)
T PF04762_consen  289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLHVL  367 (928)
T ss_pred             CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEEEE
Confidence            33333334432   24568999999999999997665 7787654432    11122222 234448898754 345555


Q ss_pred             ecCCeEEEee
Q psy12456        152 SMDRTLKLYS  161 (162)
Q Consensus       152 s~D~~i~iw~  161 (162)
                      +.++.+..++
T Consensus       368 t~~g~~~~~~  377 (928)
T PF04762_consen  368 TSNGQYEIYD  377 (928)
T ss_pred             ecCCcEEEEE
Confidence            5555555443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.49  E-value=0.00013  Score=51.18  Aligned_cols=144  Identities=15%  Similarity=0.220  Sum_probs=91.5

Q ss_pred             EEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEc-cCCCEEEEEeCCCeEEEEEcccCcceeEEee
Q psy12456         13 TAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFS-ENGYYLATAADENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        13 ~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      ...|.+ ++.++.+-...+.|..||..+++... +....  ..++++. +++ .++.+...+ +.++|..+.+.......
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence            456887 88888888889999999998776532 33222  5677887 565 455555555 55568876543322222


Q ss_pred             --C--CCCCeeEEEECCCCCEEEEeccc--------EEEEEeCCceEEEEeecCcccEEEEEECCCCceE-EEeecCCeE
Q psy12456         91 --D--PNYEIRDLCFDQSGTYMAVAGTD--------VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTL  157 (162)
Q Consensus        91 --~--~~~~v~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i  157 (162)
                        .  .....+++++.|+|.+.++....        ..++.+.....+......-...+.++|+|+++.| ++-+..+.|
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i  158 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRI  158 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeeccccccee
Confidence              1  33457899999999876665432        4566654443333333345567899999999865 566667777


Q ss_pred             EEee
Q psy12456        158 KLYS  161 (162)
Q Consensus       158 ~iw~  161 (162)
                      ..++
T Consensus       159 ~~~~  162 (246)
T PF08450_consen  159 WRFD  162 (246)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6665

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.47  E-value=6.8e-05  Score=55.31  Aligned_cols=100  Identities=13%  Similarity=0.054  Sum_probs=75.7

Q ss_pred             CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC----------CCeEEEEEcccCcceeEEeeCCC------
Q psy12456         30 SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD----------ENCVKLWDLRKLKNFKTLQLDPN------   93 (162)
Q Consensus        30 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~----------d~~v~~wd~~~~~~~~~~~~~~~------   93 (162)
                      ++|.+.|..+.+.+.++..-..|-. + ++||++.+..+..          +..|.+||..+.+.+.++....+      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            8999999999999888876554543 4 9999988877765          67899999999888777664322      


Q ss_pred             CCeeEEEECCCCCEEEEeccc----EEEEEeCCceEEEEeec
Q psy12456         94 YEIRDLCFDQSGTYMAVAGTD----VRVFLCKQWQELAMFNE  131 (162)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~  131 (162)
                      .....+.++|+|+++.+...+    +.+++....+.+.++.-
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence            112368999999999987633    67778777777766553

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1912|consensus

Probab=98.46  E-value=9.3e-06  Score=64.07  Aligned_cols=134  Identities=13%  Similarity=0.261  Sum_probs=95.3

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCC------------CEEEEEeCCCeEE
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENG------------YYLATAADENCVK   75 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~------------~~l~s~~~d~~v~   75 (162)
                      ...-++++|+|.| ++|.|+. ..|.+-|.++-+.+..+..|...|..+.|.|..            ..+++++..|.|.
T Consensus        15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            3446789999988 6777776 468999999999999999999999999998731            2577777889999


Q ss_pred             EEEcccCcceeEEeeCCCCCeeEEEECCC---C-CEEEE--ecccEEEEEeCCceEEEEeecCcccEEEEEECCC
Q psy12456         76 LWDLRKLKNFKTLQLDPNYEIRDLCFDQS---G-TYMAV--AGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTH  144 (162)
Q Consensus        76 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~---~-~~~~~--~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~  144 (162)
                      +||.........++ ++..++.++||-+.   . .+++.  ++.-+.+|+..+++.+=.+..-.....++.+.|.
T Consensus        93 l~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPf  166 (1062)
T KOG1912|consen   93 LVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPF  166 (1062)
T ss_pred             EEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCC
Confidence            99997655444444 34557899999663   3 23333  3334777877776665444444455666777664

>KOG4714|consensus

Probab=98.46  E-value=5.2e-07  Score=62.50  Aligned_cols=138  Identities=14%  Similarity=0.201  Sum_probs=85.4

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEE-----EEEEccCCCEEEEEeC-----CCeEEEEEcccCcceeEE
Q psy12456         19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQ-----ALSFSENGYYLATAAD-----ENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        19 ~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~-----~i~~~~~~~~l~s~~~-----d~~v~~wd~~~~~~~~~~   88 (162)
                      -++-++++..||.+.+++.+.-   ...+ |+-++.     +.++...++.+.++.-     -+..++|+++..+.+...
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~---~~~~-~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~  175 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKD---LALM-SRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS  175 (319)
T ss_pred             cCCceEecCCCceEEEEechHH---Hhhh-hhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc
Confidence            3556889999999999997652   1111 111111     2223334444444321     223566776543322211


Q ss_pred             eeCCCCCeeEEEECCCCC-EEEEeccc--EEEEEeCCce-EEEEeecCcccEEEEEECC-CCceEEEeecCCeEEEee
Q psy12456         89 QLDPNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQWQ-ELAMFNEHTAMVTGVRFGT-HAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~~~-~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iw~  161 (162)
                      .. ....+.++|-+|... .+++|+.+  +.+|+++... +...+..|+.+++.+-|.| ++..|.+++.||.+-.||
T Consensus       176 ~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  176 KK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             cc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence            11 122488899998654 55555555  6778776543 3445789999999999986 467889999999999997

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.45  E-value=0.00013  Score=52.47  Aligned_cols=149  Identities=15%  Similarity=0.206  Sum_probs=95.9

Q ss_pred             EEeCCCCcEEEEeeC-----CCcEEEEECC-CCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-----------------
Q psy12456         14 AQLHPDGLIFGIGTS-----DSQVQIWDLK-KQKNVTDFQLDAGPIQALSFSENGYYLATAAD-----------------   70 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~-----dg~i~~wd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-----------------   70 (162)
                      ..|+|||++|.+.-.     .|.|-|||.+ +-+.+.+|..+.-.-..+.+.||++.|+.++.                 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence            479999999987543     4779999998 55778888876533345789999988888764                 


Q ss_pred             -CCeEEEEEcccCcceeEEee---CCCCCeeEEEECCCCCEEEEecccE-------EEEEeCCceEEEEe-------ecC
Q psy12456         71 -ENCVKLWDLRKLKNFKTLQL---DPNYEIRDLCFDQSGTYMAVAGTDV-------RVFLCKQWQELAMF-------NEH  132 (162)
Q Consensus        71 -d~~v~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~-------~~h  132 (162)
                       +..+.+-|.++.+.+....+   .+...++.+++.++|..+...-...       -+...+..+.+..+       ..-
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l  215 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL  215 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh
Confidence             12333344444444444332   2345799999999987765543221       12223333322222       234


Q ss_pred             cccEEEEEECCCCceEEE-eecCCeEEEeeC
Q psy12456        133 TAMVTGVRFGTHAHYLAS-SSMDRTLKLYSL  162 (162)
Q Consensus       133 ~~~v~~~~~s~~~~~l~s-~s~D~~i~iw~~  162 (162)
                      ..++-++++++++.+++. +=.-+.+.+||.
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~  246 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDA  246 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence            578999999999987754 446778999973

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.45  E-value=6.3e-06  Score=58.75  Aligned_cols=150  Identities=17%  Similarity=0.315  Sum_probs=90.6

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-----eeeeccCCC------------CCEEEEEEccCC--CE
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-----NVTDFQLDA------------GPIQALSFSENG--YY   64 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~~--~~   64 (162)
                      +..+...||++.|...|.|+|+|...|.|.+|.-....     -...|+.|.            ..|..|.|..++  ..
T Consensus        22 ~~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          22 SSTEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             cccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            34667889999999999999999999999999854322     123355554            247778887643  35


Q ss_pred             EEEEeCCCeEEEEEcccCc--ceeEEeeCCCCCeeEEEECCCCCEEEE-------ecccEEEEEeCCceEEEE-eecCcc
Q psy12456         65 LATAADENCVKLWDLRKLK--NFKTLQLDPNYEIRDLCFDQSGTYMAV-------AGTDVRVFLCKQWQELAM-FNEHTA  134 (162)
Q Consensus        65 l~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~-~~~h~~  134 (162)
                      ++....|++|++|.+....  .+..-.+     -.++.+...|.+...       .+..-.+ .+..  +-+. -+.|.-
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnl-----s~~~~~~~~g~~~s~~~l~lprls~hd~i-iaa~--p~rvyaNaH~y  173 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNL-----SDSFHSPMGGPLTSTKELLLPRLSEHDEI-IAAK--PCRVYANAHPY  173 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhcccc-----ccccccccCCCcCCHHHhhcccccccceE-EEec--cceecccccee
Confidence            6667789999999986422  1111000     011111111211100       0000011 0111  1112 267888


Q ss_pred             cEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        135 MVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       135 ~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .+.+++|..|.+.+.++ .|=.|.+|++
T Consensus       174 hiNSiS~NsD~et~lSa-DdLrINLWnl  200 (460)
T COG5170         174 HINSISFNSDKETLLSA-DDLRINLWNL  200 (460)
T ss_pred             EeeeeeecCchheeeec-cceeeeeccc
Confidence            99999999999888765 5777899974

>KOG2114|consensus

Probab=98.43  E-value=1.3e-05  Score=63.77  Aligned_cols=135  Identities=16%  Similarity=0.211  Sum_probs=92.6

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCC-EEEEEEccCCCEEEEEeCCC-----eEEEEEcccCc
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP-IQALSFSENGYYLATAADEN-----CVKLWDLRKLK   83 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~s~~~d~-----~v~~wd~~~~~   83 (162)
                      .|++  +++.+..++.|+.+|.|.+++ ++-+.++.|+++... |..+..-.+..+|++.+.|.     .+++||+.+.+
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            5555  678899999999999999998 445666888888766 54444444557888887765     58999996431


Q ss_pred             ------ce---eEEe---eCCCCCeeEEEECCCCCEEEEecccEEEEEeCC------ceEEEEeecCcccEEEEEECCCC
Q psy12456         84 ------NF---KTLQ---LDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ------WQELAMFNEHTAMVTGVRFGTHA  145 (162)
Q Consensus        84 ------~~---~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~h~~~v~~~~~s~~~  145 (162)
                            .+   +.+.   .....++.+++.+.+-+.+++|-.++.|...+.      +........-..+|+++.|..++
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~  183 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG  183 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence                  12   1111   112456888999999999999999877654321      12222233456789999997666


Q ss_pred             ce
Q psy12456        146 HY  147 (162)
Q Consensus       146 ~~  147 (162)
                      +.
T Consensus       184 ~s  185 (933)
T KOG2114|consen  184 KS  185 (933)
T ss_pred             ce
Confidence            65

>KOG4190|consensus

Probab=98.41  E-value=1.3e-06  Score=66.48  Aligned_cols=149  Identities=14%  Similarity=0.235  Sum_probs=95.8

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-------eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-------KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      .|.+++.-.+.+-+++++.|.+|++|.++..       .+..+++.|..+|..+.|-.+.+++++  .|+.+.+||....
T Consensus       737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFig  814 (1034)
T KOG4190|consen  737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIG  814 (1034)
T ss_pred             HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeeccccc
Confidence            3444444456667889999999999999742       356778899999999999988888764  5688999997654


Q ss_pred             cceeEEeeCC----CCCeeEEEECCCCCEEEEe-cc--cEEEEEeCCceEEEE---e--ecCcccEEEEEECCCCceEEE
Q psy12456         83 KNFKTLQLDP----NYEIRDLCFDQSGTYMAVA-GT--DVRVFLCKQWQELAM---F--NEHTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus        83 ~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~-~~--~~~i~~~~~~~~~~~---~--~~h~~~v~~~~~s~~~~~l~s  150 (162)
                      +.+..+...+    ...|.|+. +-+...+..+ +.  .+++++.+..+-..+   .  .+.+..+.+++..|.|++++.
T Consensus       815 r~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa  893 (1034)
T KOG4190|consen  815 RLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA  893 (1034)
T ss_pred             chhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH
Confidence            4433222211    12233332 2244444443 32  367776554332222   2  244566888888999999988


Q ss_pred             eecCCeEEEee
Q psy12456        151 SSMDRTLKLYS  161 (162)
Q Consensus       151 ~s~D~~i~iw~  161 (162)
                      +=..|+|-+-|
T Consensus       894 ~LSnGci~~LD  904 (1034)
T KOG4190|consen  894 ALSNGCIAILD  904 (1034)
T ss_pred             HhcCCcEEEEe
Confidence            76677665543

>KOG1832|consensus

Probab=98.40  E-value=1.3e-06  Score=69.67  Aligned_cols=142  Identities=13%  Similarity=0.198  Sum_probs=96.6

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCC--eEEEEEcc----
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADEN--CVKLWDLR----   80 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~--~v~~wd~~----   80 (162)
                      +...-|+++|+.+.+.+++|+..|.|++|++.+|........|..+|+-+.=+.+|..+++.+.-.  ...+|++.    
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence            446679999999999999999999999999999988888888998998888777877666654322  23455543    


Q ss_pred             -----------------------------------cCcceeEE-e--eCCCCCeeEEEECCCCCEEEEecccEEEEEeCC
Q psy12456         81 -----------------------------------KLKNFKTL-Q--LDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ  122 (162)
Q Consensus        81 -----------------------------------~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  122 (162)
                                                         +.....++ .  ....+.-.+..|+|..++++   .|..+|+.+.
T Consensus      1180 ~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndGvLWDvR~ 1256 (1516)
T KOG1832|consen 1180 PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDGVLWDVRI 1256 (1516)
T ss_pred             ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCceeeeecc
Confidence                                               22211110 0  00112235678888887764   4567888777


Q ss_pred             ceEEEEeecCcccEEEEEECCCCceEEEee
Q psy12456        123 WQELAMFNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus       123 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                      .+.+..|...+..+.+. |.|.|.-++.-+
T Consensus      1257 ~~aIh~FD~ft~~~~G~-FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1257 PEAIHRFDQFTDYGGGG-FHPSGNEVIINS 1285 (1516)
T ss_pred             HHHHhhhhhheeccccc-ccCCCceEEeec
Confidence            76676666555444443 778777665443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.38  E-value=4.2e-05  Score=57.63  Aligned_cols=143  Identities=14%  Similarity=0.282  Sum_probs=91.3

Q ss_pred             EEEeCCCCcEEEEeeC-----------CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe--CCCeEEEEEc
Q psy12456         13 TAQLHPDGLIFGIGTS-----------DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA--DENCVKLWDL   79 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~-----------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~d~~v~~wd~   79 (162)
                      .+.|++.|+++++--.           ...+.|++++.. .+.....-.++|...+|.|.++.+++.+  .+..+.++|+
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l  305 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL  305 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeeccc
Confidence            3667777876643221           133667776532 2222223368999999999988877766  5678899999


Q ss_pred             ccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-----EEEEEeC-CceEEEEeecCcccEEEEEECCCCceEEEee-
Q psy12456         80 RKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCK-QWQELAMFNEHTAMVTGVRFGTHAHYLASSS-  152 (162)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-  152 (162)
                      +..  +.. .. +...-..+.|+|.+++++.++.+     +.+++.. .+..+..+.+-.  ..-+.|+|+++++-+.. 
T Consensus       306 r~N--l~~-~~-Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~t  379 (561)
T COG5354         306 RGN--LRF-YF-PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTT  379 (561)
T ss_pred             ccc--eEE-ec-CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCC
Confidence            863  222 22 22223556799999999998765     4444432 233444455433  34467999999887652 


Q ss_pred             -----cCCeEEEeeC
Q psy12456        153 -----MDRTLKLYSL  162 (162)
Q Consensus       153 -----~D~~i~iw~~  162 (162)
                           .|..|+||++
T Consensus       380 s~k~~~Dn~i~l~~v  394 (561)
T COG5354         380 SEKLRVDNSIKLWDV  394 (561)
T ss_pred             CcccccCcceEEEEe
Confidence                 4889999985

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.37  E-value=0.00028  Score=49.58  Aligned_cols=143  Identities=15%  Similarity=0.136  Sum_probs=88.6

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCC--------CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEE-EEeCCCeEEEE
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSD--------SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLA-TAADENCVKLW   77 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d~~v~~w   77 (162)
                      .....+.+++.|+|+++++....        |.+..++.. ++...... .-.....|+|+|+++.|. +-+..+.|..|
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~  161 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRF  161 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEE
Confidence            55677999999999988876654        557777776 44333222 234568999999998665 55677888888


Q ss_pred             EcccCcc-e---eEE-eeCCCC-CeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEEC-CCC-ce
Q psy12456         78 DLRKLKN-F---KTL-QLDPNY-EIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFG-THA-HY  147 (162)
Q Consensus        78 d~~~~~~-~---~~~-~~~~~~-~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s-~~~-~~  147 (162)
                      ++..... +   ..+ ...... ....+++..+|.+.++....  +.+++-+ .+.+..+.-....+++++|. |+. .+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             EEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEE
T ss_pred             eccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEE
Confidence            8853222 1   122 122221 36789999999877664333  5554433 56666666555589999994 664 45


Q ss_pred             EEEee
Q psy12456        148 LASSS  152 (162)
Q Consensus       148 l~s~s  152 (162)
                      ++|.+
T Consensus       241 ~vTta  245 (246)
T PF08450_consen  241 YVTTA  245 (246)
T ss_dssp             EEEEB
T ss_pred             EEEeC
Confidence            55543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>smart00320 WD40 WD40 repeats

Probab=98.37  E-value=2.5e-06  Score=40.89  Aligned_cols=38  Identities=42%  Similarity=0.580  Sum_probs=33.6

Q ss_pred             eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       124 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +.+..+..|...|.++.|.|+++++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.36  E-value=0.00022  Score=59.91  Aligned_cols=150  Identities=11%  Similarity=0.114  Sum_probs=92.5

Q ss_pred             EEEEEeCCCCcEEEE-eeCCCcEEEEECCCCeeeeeccCC-----------------CCCEEEEEEcc-CCCEEEEEeCC
Q psy12456         11 LTTAQLHPDGLIFGI-GTSDSQVQIWDLKKQKNVTDFQLD-----------------AGPIQALSFSE-NGYYLATAADE   71 (162)
Q Consensus        11 v~~~~~~~~g~~~a~-g~~dg~i~~wd~~~~~~~~~~~~~-----------------~~~v~~i~~~~-~~~~l~s~~~d   71 (162)
                      ...+++.++++.+.+ -..++.|+++|+.++. +.++.+-                 -..-..++++| ++..+++...+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            467889988775444 4456789999987654 3322110                 01224789999 56667777788


Q ss_pred             CeEEEEEcccCcceeEEeeC--------------CCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEE-------
Q psy12456         72 NCVKLWDLRKLKNFKTLQLD--------------PNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELA-------  127 (162)
Q Consensus        72 ~~v~~wd~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~-------  127 (162)
                      +.|++||..+... ..+...              .......++++|++..+.++..+   +++++........       
T Consensus       705 ~~I~v~d~~~g~v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        705 HQIWEYNISDGVT-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CeEEEEECCCCeE-EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            8999999865321 111100              01124578999998855555432   6666655432110       


Q ss_pred             ------EeecC--------cccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        128 ------MFNEH--------TAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       128 ------~~~~h--------~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                            .+..+        -....++++++++..+++-+.++.|++||.
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~  832 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDP  832 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEEC
Confidence                  01001        112357889999999999999999999984

>KOG1645|consensus

Probab=98.35  E-value=7.9e-06  Score=59.86  Aligned_cols=113  Identities=14%  Similarity=0.202  Sum_probs=80.1

Q ss_pred             CCCCcEEEEEeCCCCc-EEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSEN-GYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .++..|-.++|+|..+ ++..++.+.+|+|.|+++...+..+..+ .++.+++|+-| .+++..|...|.|.+||+|..+
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            4567788999999777 8899999999999999999999999888 68999999975 4566677788999999998654


Q ss_pred             ce-eEEee-CCCCCeeEE------EECCCCCEEEEecccEEEEE
Q psy12456         84 NF-KTLQL-DPNYEIRDL------CFDQSGTYMAVAGTDVRVFL  119 (162)
Q Consensus        84 ~~-~~~~~-~~~~~v~~~------~~~~~~~~~~~~~~~~~i~~  119 (162)
                      .. ..+.. -...+|..+      ...+.+.+++..+.+...|.
T Consensus       270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~e  313 (463)
T KOG1645|consen  270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYE  313 (463)
T ss_pred             chHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhh
Confidence            31 11111 011122222      33445666666666655554

>smart00320 WD40 WD40 repeats

Probab=98.33  E-value=2.9e-06  Score=40.69  Aligned_cols=39  Identities=36%  Similarity=0.783  Sum_probs=34.2

Q ss_pred             CeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q psy12456         40 QKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD   78 (162)
Q Consensus        40 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd   78 (162)
                      ++++..+..|...|.+++|.+++.++++++.|+.+++||
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667778888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2695|consensus

Probab=98.32  E-value=3.7e-06  Score=60.53  Aligned_cols=133  Identities=14%  Similarity=0.155  Sum_probs=92.6

Q ss_pred             eeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc-----ceeEEeeCCCCCeeEEE
Q psy12456         26 GTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK-----NFKTLQLDPNYEIRDLC  100 (162)
Q Consensus        26 g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~-----~~~~~~~~~~~~v~~~~  100 (162)
                      .+.+..+-+-|+.++ ....|. ..+-|.+.+|...++++..|..+|.|..+|+|...     ....+  -+...++++.
T Consensus       230 ~G~sqqv~L~nvetg-~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq  305 (425)
T KOG2695|consen  230 VGLSQQVLLTNVETG-HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQ  305 (425)
T ss_pred             ccccceeEEEEeecc-cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhh
Confidence            344566888887765 334454 34568888998888999999999999999998542     22222  2455677776


Q ss_pred             ECC-CCCEEEEeccc--EEEEEeCCceE---EEEeecCcccEEEEEE--CCCCceEEEeecCCeEEEeeC
Q psy12456        101 FDQ-SGTYMAVAGTD--VRVFLCKQWQE---LAMFNEHTAMVTGVRF--GTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       101 ~~~-~~~~~~~~~~~--~~i~~~~~~~~---~~~~~~h~~~v~~~~~--s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .-. +++++.+.+-+  +++|+++-.+.   +..+++|...-.-+-+  .+....+++++.|.-.|||.+
T Consensus       306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl  375 (425)
T KOG2695|consen  306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL  375 (425)
T ss_pred             hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec
Confidence            655 45565555444  68898766555   8889998764433333  456778889999999999975

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.31  E-value=9.3e-05  Score=56.73  Aligned_cols=113  Identities=10%  Similarity=0.152  Sum_probs=72.5

Q ss_pred             CCCCEEEEEEcc-CCCEEEEE----eCCCe----EEEEEcccC--cceeEEeeCCCCCeeEEEECCCCCEEEEecccEEE
Q psy12456         49 DAGPIQALSFSE-NGYYLATA----ADENC----VKLWDLRKL--KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRV  117 (162)
Q Consensus        49 ~~~~v~~i~~~~-~~~~l~s~----~~d~~----v~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i  117 (162)
                      ...| ..+.|+. +.+.+.+.    +.++.    -.+|++...  +.+..........+.+++++|+.+.++.|-.|..+
T Consensus       205 E~dP-l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDP-LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCc-EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence            3344 3567765 33444443    22332    245666432  23333333445568999999999999999888444


Q ss_pred             EEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        118 FLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       118 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..++....+.......-..+.++|+|+|..++.|+.-|.+.+||+
T Consensus       284 iLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  284 ILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDM  328 (545)
T ss_pred             EEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence            433333234334445566788999999999999999999999995

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.21  E-value=0.0003  Score=42.98  Aligned_cols=98  Identities=15%  Similarity=0.247  Sum_probs=61.4

Q ss_pred             EEEEEeCC---CC-cEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456         11 LTTAQLHP---DG-LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus        11 v~~~~~~~---~g-~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      |+++++.+   || +-|++|+.|..||+|+  ..+.+.+++.. +.|..++-... ..++.+-.+|+|.+|+-.    .+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~----~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS----QR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc----ce
Confidence            44555544   33 4688999999999996  45777777755 45666665555 679999999999999853    23


Q ss_pred             EEeeCCCCCeeEEEEC-C--CC-CEEEEecccEE
Q psy12456         87 TLQLDPNYEIRDLCFD-Q--SG-TYMAVAGTDVR  116 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~-~--~~-~~~~~~~~~~~  116 (162)
                      .++...+..+.++.+. .  +| +-|++|-.+.+
T Consensus        74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGk  107 (111)
T PF14783_consen   74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGK  107 (111)
T ss_pred             eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCe
Confidence            3444344345554443 2  23 23555544433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.20  E-value=0.00018  Score=54.88  Aligned_cols=137  Identities=14%  Similarity=0.213  Sum_probs=79.7

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ...+.+.++|+|+.+++ +.||...|+.....+....     +.-...+|.+.+ .+++-....+|.++.-.+.+....+
T Consensus        33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i  105 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSI  105 (443)
T ss_dssp             S--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT---
T ss_pred             cCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEE
Confidence            34578999999999988 6689999998433333221     122356888855 4666666888999633222222233


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      +.  ...+..+..   |.+++..+.+ +.+|++.+.+.++++...  +|..+.|++++++++-.+.| ++.+.
T Consensus       106 ~~--~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il  170 (443)
T PF04053_consen  106 KL--PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYIL  170 (443)
T ss_dssp             ----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred             cC--CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEE
Confidence            33  223455543   8888888888 999999988888887754  38999999999999988765 45554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.17  E-value=0.0011  Score=47.88  Aligned_cols=139  Identities=12%  Similarity=0.160  Sum_probs=95.1

Q ss_pred             EEEeCC-CCcEEEEeeCCCc-EEEEECCCCeeeeeccCCCCCE--EEEEEccCCCEEEEEeC-----CCeEEEEEcc-cC
Q psy12456         13 TAQLHP-DGLIFGIGTSDSQ-VQIWDLKKQKNVTDFQLDAGPI--QALSFSENGYYLATAAD-----ENCVKLWDLR-KL   82 (162)
Q Consensus        13 ~~~~~~-~g~~~a~g~~dg~-i~~wd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~-----d~~v~~wd~~-~~   82 (162)
                      .++.+| ....++.+-.-|+ ..+||.++++....+....+.-  -.-.|++||++|.+.=+     .|.|-+||.+ ..
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            467889 6777777777766 5679999998887776543322  24589999999988744     4689999998 56


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCCEEEEecccEE---------E----------E-EeCCceEEEE--e--ecCcccEEE
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVR---------V----------F-LCKQWQELAM--F--NEHTAMVTG  138 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------i----------~-~~~~~~~~~~--~--~~h~~~v~~  138 (162)
                      +.+.++..+-. ....+.+.|+++.|+++...++         +          + +..+.+.+..  +  ..|.-.+.+
T Consensus        89 ~ri~E~~s~GI-GPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH  167 (305)
T PF07433_consen   89 RRIGEFPSHGI-GPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH  167 (305)
T ss_pred             EEEeEecCCCc-ChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence            66666654333 3577889999988888764321         1          1 1233443433  3  346677999


Q ss_pred             EEECCCCceEEEee
Q psy12456        139 VRFGTHAHYLASSS  152 (162)
Q Consensus       139 ~~~s~~~~~l~s~s  152 (162)
                      +++.+++..+...-
T Consensus       168 La~~~~G~V~~a~Q  181 (305)
T PF07433_consen  168 LAVDGDGTVAFAMQ  181 (305)
T ss_pred             EEecCCCcEEEEEe
Confidence            99999887665543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.16  E-value=4.3e-05  Score=57.58  Aligned_cols=154  Identities=17%  Similarity=0.190  Sum_probs=101.8

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCC------------
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADEN------------   72 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~------------   72 (162)
                      +...-+++.+.++|-|.+|++....| |.+|+......+..+..  ..|..+.|+|.++||.+=+...            
T Consensus        29 ~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~~--~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~  105 (561)
T COG5354          29 ESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFRH--PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT  105 (561)
T ss_pred             cccCcchhheeecCcchheehhhccc-eEEccccchhheeeeec--CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence            34667889999999999999888755 99999877665555542  4688999999999999876633            


Q ss_pred             ---eEEEEEcccCcceeEEeeCCCC-Ce-eEEEECCCCCEEEEe-cccEEEEEeCC-ceEEEEeec-CcccEEEEEECCC
Q psy12456         73 ---CVKLWDLRKLKNFKTLQLDPNY-EI-RDLCFDQSGTYMAVA-GTDVRVFLCKQ-WQELAMFNE-HTAMVTGVRFGTH  144 (162)
Q Consensus        73 ---~v~~wd~~~~~~~~~~~~~~~~-~v-~~~~~~~~~~~~~~~-~~~~~i~~~~~-~~~~~~~~~-h~~~v~~~~~s~~  144 (162)
                         .+.+||+.....+..+...... .. .-+.|+-+..|+|=. +.++.|+.... .... .+.. -...+...+|+|.
T Consensus       106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~-p~~~lr~~gi~dFsisP~  184 (561)
T COG5354         106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEH-PFKNLRPVGILDFSISPE  184 (561)
T ss_pred             ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccC-chhhccccceeeEEecCC
Confidence               4899999877666665443221 12 256788888776654 34477776421 1111 1111 1245778888886


Q ss_pred             Cc--eEEE-----eecCCeEEEeeC
Q psy12456        145 AH--YLAS-----SSMDRTLKLYSL  162 (162)
Q Consensus       145 ~~--~l~s-----~s~D~~i~iw~~  162 (162)
                      +.  .||.     .+.++++++|.+
T Consensus       185 ~n~~~la~~tPEk~~kpa~~~i~sI  209 (561)
T COG5354         185 GNHDELAYWTPEKLNKPAMVRILSI  209 (561)
T ss_pred             CCCceEEEEccccCCCCcEEEEEEc
Confidence            32  2332     456788888864

>KOG1920|consensus

Probab=98.14  E-value=0.00015  Score=59.88  Aligned_cols=157  Identities=15%  Similarity=0.210  Sum_probs=96.3

Q ss_pred             ccCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECC----CCee-------------------eeeccCCC---------
Q psy12456          3 ASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK----KQKN-------------------VTDFQLDA---------   50 (162)
Q Consensus         3 ~~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~----~~~~-------------------~~~~~~~~---------   50 (162)
                      ..|.-..+|.++.|+||++++|..+.++++.+-+..    .-++                   ...|.+..         
T Consensus       104 ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~  183 (1265)
T KOG1920|consen  104 IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKI  183 (1265)
T ss_pred             eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccc
Confidence            345566789999999999999999998888775431    0011                   11122110         


Q ss_pred             ------------CCEEEEEEccCCCEEEEE-----eCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc
Q psy12456         51 ------------GPIQALSFSENGYYLATA-----ADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT  113 (162)
Q Consensus        51 ------------~~v~~i~~~~~~~~l~s~-----~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  113 (162)
                                  ..=.+|.|.-||.++++.     .+.+.+++||-. .. ++.........-.+++|-|.|.++++-..
T Consensus       184 ~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~  261 (1265)
T KOG1920|consen  184 EKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQC  261 (1265)
T ss_pred             cccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceeecCCCCeEeeeee
Confidence                        011248999999999883     333789999954 11 22221112233467999999999988432


Q ss_pred             ----c-EEEEEeCC---ceEEEEeecCcccEEEEEECCCCceEEE---eecCCeEEEee
Q psy12456        114 ----D-VRVFLCKQ---WQELAMFNEHTAMVTGVRFGTHAHYLAS---SSMDRTLKLYS  161 (162)
Q Consensus       114 ----~-~~i~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s---~s~D~~i~iw~  161 (162)
                          + +.++.-+-   .+-.-.+......|..++|+.++..||.   ......|++|-
T Consensus       262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt  320 (1265)
T KOG1920|consen  262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT  320 (1265)
T ss_pred             cCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence                2 33333211   1111123334445999999999999886   44455699995

>KOG1912|consensus

Probab=98.12  E-value=0.00018  Score=57.14  Aligned_cols=100  Identities=11%  Similarity=0.162  Sum_probs=75.3

Q ss_pred             cCCCCCcEEEEEeCCCC------------cEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc---CC-CEEEE
Q psy12456          4 SGAGGPTLTTAQLHPDG------------LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE---NG-YYLAT   67 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g------------~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~l~s   67 (162)
                      ...+...|+.+.|.|..            .++|++...|.|.+||+..+..+..+..|..++..++|-+   +. ..|+.
T Consensus        51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Lla  130 (1062)
T KOG1912|consen   51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLA  130 (1062)
T ss_pred             cccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEE
Confidence            44677889999988732            3688999999999999999999999998999999999976   33 45666


Q ss_pred             EeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCC
Q psy12456         68 AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQS  104 (162)
Q Consensus        68 ~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~  104 (162)
                      -....++.+|+-.+.+.+=++...+. ...|+.+.|-
T Consensus       131 Ih~ss~lvLwntdtG~k~Wk~~ys~~-iLs~f~~DPf  166 (1062)
T KOG1912|consen  131 IHGSSTLVLWNTDTGEKFWKYDYSHE-ILSCFRVDPF  166 (1062)
T ss_pred             ecCCcEEEEEEccCCceeeccccCCc-ceeeeeeCCC
Confidence            67778999999877665444333322 3566777773

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.09  E-value=5.9e-05  Score=53.98  Aligned_cols=156  Identities=17%  Similarity=0.268  Sum_probs=102.7

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee---eeeccCCC-----CCEEEEEEccC-CCEEEEEeCCCeE
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN---VTDFQLDA-----GPIQALSFSEN-GYYLATAADENCV   74 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~---~~~~~~~~-----~~v~~i~~~~~-~~~l~s~~~d~~v   74 (162)
                      ..+|.+-|+++.++.|...+.++ .|-.|-+|++.....   +-.++.|.     .-|++..|+|. .+.+...+..|.|
T Consensus       168 aNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I  246 (460)
T COG5170         168 ANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI  246 (460)
T ss_pred             cccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence            36788899999999998888654 467899999875432   22233332     34778889985 4556666778999


Q ss_pred             EEEEcccCcc------eeEEeeC---------CCCCeeEEEECCCCCEEEEeccc-EEEEEeCC-ceEEEEeecCc----
Q psy12456         75 KLWDLRKLKN------FKTLQLD---------PNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQ-WQELAMFNEHT----  133 (162)
Q Consensus        75 ~~wd~~~~~~------~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~-~~~~~~~~~h~----  133 (162)
                      ++-|+|....      .......         ....|.++.|+++|+|+++-+.. +++|+.+. ..+++++.-|.    
T Consensus       247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHH
Confidence            9999983211      1111111         12347889999999999998776 88998643 23455543332    


Q ss_pred             --------ccE---EEEEECCCCceEEEeecCCeEEEe
Q psy12456        134 --------AMV---TGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus       134 --------~~v---~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                              ..|   ..+.||-+.+.+.+|+.....-+|
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence                    122   347788888888888876554443

>KOG2314|consensus

Probab=98.08  E-value=0.00025  Score=54.29  Aligned_cols=139  Identities=15%  Similarity=0.272  Sum_probs=89.1

Q ss_pred             CcEEEEEeCCCCcEEEEeeC-----------CCcEEEEECCCCeeeeeccCCCCC---EEEEEEccCCCEEEEEeCCCeE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTS-----------DSQVQIWDLKKQKNVTDFQLDAGP---IQALSFSENGYYLATAADENCV   74 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~-----------dg~i~~wd~~~~~~~~~~~~~~~~---v~~i~~~~~~~~l~s~~~d~~v   74 (162)
                      +.|.-++|||..+||++=+.           ...++|||+++|...+.|..-..+   -.-..||-|++++|--..| .|
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-si  328 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SI  328 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eE
Confidence            46788999999999987543           256999999999988888752221   1235799999999877664 58


Q ss_pred             EEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-----EE--EEEeCCceEEEEeecCcccEEEEEECCCCce
Q psy12456         75 KLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-----VR--VFLCKQWQELAMFNEHTAMVTGVRFGTHAHY  147 (162)
Q Consensus        75 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~--i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~  147 (162)
                      .+|+-.++..+..-.... ..|+...|+|.+..||-=...     .+  +...-+.+.++..+-|.-.=..+.|-.+|.+
T Consensus       329 sIyEtpsf~lld~Kslki-~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy  407 (698)
T KOG2314|consen  329 SIYETPSFMLLDKKSLKI-SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY  407 (698)
T ss_pred             EEEecCceeeecccccCC-ccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence            999876544433322322 358999999999888764332     22  2222333444443333322233556667777


Q ss_pred             EE
Q psy12456        148 LA  149 (162)
Q Consensus       148 l~  149 (162)
                      |+
T Consensus       408 Lc  409 (698)
T KOG2314|consen  408 LC  409 (698)
T ss_pred             EE
Confidence            65

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=98.08  E-value=0.0017  Score=47.15  Aligned_cols=150  Identities=16%  Similarity=0.232  Sum_probs=80.6

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc-ccCcceeE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL-RKLKNFKT   87 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~-~~~~~~~~   87 (162)
                      ..+..+.-++||.+++++.......-||.-...-...-..-...|.+|.|+|++.+.+.+ ..+.|++=+. ...+....
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~  223 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE  223 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc
Confidence            457788889999999998877767789854322111111234689999999997765544 7788877662 11111111


Q ss_pred             --Eee-CCCCCeeEEEECCCCCEEEEecccEEEEEeC---CceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         88 --LQL-DPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK---QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        88 --~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                        ... .....+.+++|.++.+..++|+....++..+   +|+..+....-......+.|.+..+-++-| .||.+-=|
T Consensus       224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  224 PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             -B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred             ccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence              000 1223478999999999888887775555543   455554444445568888997656666544 67765443

>KOG2114|consensus

Probab=98.07  E-value=0.00048  Score=55.17  Aligned_cols=150  Identities=14%  Similarity=0.171  Sum_probs=94.5

Q ss_pred             EEEEEeCCCCcEEEEeeCCC-----cEEEEECCCC---e-e--e---eecc----CCCCCEEEEEEccCCCEEEEEeCCC
Q psy12456         11 LTTAQLHPDGLIFGIGTSDS-----QVQIWDLKKQ---K-N--V---TDFQ----LDAGPIQALSFSENGYYLATAADEN   72 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg-----~i~~wd~~~~---~-~--~---~~~~----~~~~~v~~i~~~~~~~~l~s~~~d~   72 (162)
                      |+-+..-.+.++|++.+.|+     .+++||+++-   . |  +   +.++    ....|+..++.+.+-+.++.|-.+|
T Consensus        68 v~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG  147 (933)
T KOG2114|consen   68 VQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNG  147 (933)
T ss_pred             hhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCc
Confidence            44443333435666666554     4899999753   2 2  2   1122    1246788999999999999999999


Q ss_pred             eEEEEEc---ccCcceeEEeeCCCCCeeEEEECCCCCE--EEEecccEEEEEeCCce-EEEEeecCcccEEEEEECCCCc
Q psy12456         73 CVKLWDL---RKLKNFKTLQLDPNYEIRDLCFDQSGTY--MAVAGTDVRVFLCKQWQ-ELAMFNEHTAMVTGVRFGTHAH  146 (162)
Q Consensus        73 ~v~~wd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~i~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~  146 (162)
                      .|..+.-   |..-.........+.+|+.+.+..+++.  +++....+++|...... .......|...+.+..|++...
T Consensus       148 ~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~  227 (933)
T KOG2114|consen  148 LVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY  227 (933)
T ss_pred             EEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCc
Confidence            9998863   2211222334445678999999888776  44444447777765322 2444777888899999986555


Q ss_pred             eEEEeecCCeEEEee
Q psy12456        147 YLASSSMDRTLKLYS  161 (162)
Q Consensus       147 ~l~s~s~D~~i~iw~  161 (162)
                      .|+.+ .+..+.+|+
T Consensus       228 qfIca-~~e~l~fY~  241 (933)
T KOG2114|consen  228 QFICA-GSEFLYFYD  241 (933)
T ss_pred             cEEEe-cCceEEEEc
Confidence            34333 344566665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.06  E-value=0.0017  Score=45.94  Aligned_cols=136  Identities=18%  Similarity=0.243  Sum_probs=80.5

Q ss_pred             EEeCCCCcEEEEeeCCCcEEEEECCCC--eeeeeccCCC---CCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456         14 AQLHPDGLIFGIGTSDSQVQIWDLKKQ--KNVTDFQLDA---GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~dg~i~~wd~~~~--~~~~~~~~~~---~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ++.+++|+++|+- .|..|.|-..+..  ..+.+.+.+.   ..-+-++||||+..|+.+...|+|++||+...+. ...
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVI   80 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEc
Confidence            5678899999864 5788888766542  2333333332   3467899999999999999999999999864222 111


Q ss_pred             e------eCCCCCeeEEEECCCC-------CEEEEeccc--EEEEEe-----CCceEEEEe---ecCcccEEEEEECCCC
Q psy12456         89 Q------LDPNYEIRDLCFDQSG-------TYMAVAGTD--VRVFLC-----KQWQELAMF---NEHTAMVTGVRFGTHA  145 (162)
Q Consensus        89 ~------~~~~~~v~~~~~~~~~-------~~~~~~~~~--~~i~~~-----~~~~~~~~~---~~h~~~v~~~~~s~~~  145 (162)
                      .      ......|..+.|-+..       ++++. ...  ++-+..     ...++-..+   ..+...|.++.|.|..
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi-~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI-NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEE-eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            1      1112345555554321       22222 222  222221     122232222   2346689999999988


Q ss_pred             ceEEEee
Q psy12456        146 HYLASSS  152 (162)
Q Consensus       146 ~~l~s~s  152 (162)
                      +.|..||
T Consensus       160 ~LLlVgG  166 (282)
T PF15492_consen  160 RLLLVGG  166 (282)
T ss_pred             CEEEEec
Confidence            8776554

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.05  E-value=0.001  Score=52.28  Aligned_cols=143  Identities=15%  Similarity=0.156  Sum_probs=92.4

Q ss_pred             eCCCCcEEEEe-eCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe-------------------------
Q psy12456         16 LHPDGLIFGIG-TSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA-------------------------   69 (162)
Q Consensus        16 ~~~~g~~~a~g-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-------------------------   69 (162)
                      +.|||+.+... -..+.+.+.|..+.+....+.... .-..++++|++.++.+.+                         
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence            45677655333 334667788888777766665443 335678888888877775                         


Q ss_pred             ---------------CCCeEEEEEccc-----CcceeEEeeCCCCCeeEEEECCCCCEEEEecc---cEEEEEeCCceE-
Q psy12456         70 ---------------DENCVKLWDLRK-----LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQE-  125 (162)
Q Consensus        70 ---------------~d~~v~~wd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~-  125 (162)
                                     .++.|.+.|.++     .+....... . .....+.++|+|+++.+++.   ++.|++....+. 
T Consensus       279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV-G-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~  356 (635)
T PRK02888        279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV-P-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL  356 (635)
T ss_pred             HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC-C-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence                           124577777765     222232222 2 24678999999999998864   377877655331 


Q ss_pred             -----------EEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        126 -----------LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       126 -----------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                                 +.+..--.+ -.+.+|.++|....|-.-|..|--|++
T Consensus       357 ~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        357 FDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             hhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEeh
Confidence                       233332233 345679999988888899999999985

>KOG3621|consensus

Probab=98.04  E-value=6e-05  Score=58.85  Aligned_cols=108  Identities=13%  Similarity=0.190  Sum_probs=77.7

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC--CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL--DAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      .|.-..+...+++++.|++-|.+.+|+-..++ ...++.  ..+.+..+..+++..+++.|+..+.|.++.+.+......
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            34444556678999999999999999955443 333333  345667788899999999999999999998865322111


Q ss_pred             ---Eee--CCCCCeeEEEECCCCCEEEEecccEEEE
Q psy12456         88 ---LQL--DPNYEIRDLCFDQSGTYMAVAGTDVRVF  118 (162)
Q Consensus        88 ---~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~  118 (162)
                         ...  .+...|++++|+++++.+.+|....+|.
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~  149 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVV  149 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEE
Confidence               111  2356799999999999999998775543

>KOG0882|consensus

Probab=98.04  E-value=2.9e-05  Score=57.79  Aligned_cols=156  Identities=15%  Similarity=0.249  Sum_probs=105.5

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC--C-eeeeeccCCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK--Q-KNVTDFQLDAGPIQALSFSENGYYLATAAD-ENCVKLWDLR   80 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~--~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~~v~~wd~~   80 (162)
                      =+|...|+-+..+. .+++.+++.||.++.|--..  + +.+..+..|.+.|.+++.+-++.++.+.+. |+.++++|+.
T Consensus         6 ymhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    6 YMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             hcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence            35677788776554 56889999999999997433  1 234556678889999999999999999777 9999999998


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCC--CEEEEeccc-EEEEEeCCc----eEEEEeecCcccEEEEEECCCCceEEEeec
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSG--TYMAVAGTD-VRVFLCKQW----QELAMFNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~-~~i~~~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                      +...+..+....-....++-.+|..  ..++++..+ ..++..+..    +....-.-|..+|..+.+++-+..+++...
T Consensus        85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            7665544433211111222223322  244444433 333333322    223334569999999999999999888888


Q ss_pred             CCeEEEee
Q psy12456        154 DRTLKLYS  161 (162)
Q Consensus       154 D~~i~iw~  161 (162)
                      .|.|..|.
T Consensus       165 ~gmVEyWs  172 (558)
T KOG0882|consen  165 SGMVEYWS  172 (558)
T ss_pred             cceeEeec
Confidence            89999996

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.01  E-value=0.0008  Score=52.87  Aligned_cols=89  Identities=19%  Similarity=0.219  Sum_probs=58.7

Q ss_pred             CCcEEEEECCC-----CeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcccCcc------------eeEEee
Q psy12456         29 DSQVQIWDLKK-----QKNVTDFQLDAGPIQALSFSENGYYLATAAD-ENCVKLWDLRKLKN------------FKTLQL   90 (162)
Q Consensus        29 dg~i~~wd~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~~v~~wd~~~~~~------------~~~~~~   90 (162)
                      +++|.+.|.++     .+.+..+.... ....++++|||++++.++. +.++.+.|+.+.+.            +.....
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            46688899887     35555555443 3467899999998887764 88999999987553            122222


Q ss_pred             CCCCCeeEEEECCCCCEEEEeccc--EEEEEe
Q psy12456         91 DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLC  120 (162)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~  120 (162)
                        .......+|.++|....+-.-|  +..|+.
T Consensus       374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             --CCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence              1223456888888766665555  444554

>KOG1920|consensus

Probab=97.97  E-value=0.0013  Score=54.58  Aligned_cols=151  Identities=14%  Similarity=0.149  Sum_probs=95.8

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEE----cccC
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD----LRKL   82 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd----~~~~   82 (162)
                      +...|.++.|..+++-++.+..+|.|.+-|..+..... ...-+..|.+++|+||+..++......++.+=+    +-.-
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            44689999999999999999999999999887654322 222346799999999999999999888765422    1100


Q ss_pred             cce-------------------eEEeeC------------C--------CCCeeEEEECCCCCEEEEec-----c--cEE
Q psy12456         83 KNF-------------------KTLQLD------------P--------NYEIRDLCFDQSGTYMAVAG-----T--DVR  116 (162)
Q Consensus        83 ~~~-------------------~~~~~~------------~--------~~~v~~~~~~~~~~~~~~~~-----~--~~~  116 (162)
                      +..                   ..+...            .        ...-..++|..+|+++++..     .  .++
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence            000                   001100            0        00013489999999999943     2  256


Q ss_pred             EEEeCCceEEEEee-cCcccEEEEEECCCCceEEEee---cCCeEEEe
Q psy12456        117 VFLCKQWQELAMFN-EHTAMVTGVRFGTHAHYLASSS---MDRTLKLY  160 (162)
Q Consensus       117 i~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s---~D~~i~iw  160 (162)
                      ||+..  ..+.... .-.+.=.+++|-|.|.++++-.   .|..|.++
T Consensus       226 V~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivff  271 (1265)
T KOG1920|consen  226 VYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFF  271 (1265)
T ss_pred             Eeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEE
Confidence            66543  1222211 1222335689999999998753   35567765

>KOG4190|consensus

Probab=97.96  E-value=1.1e-05  Score=61.73  Aligned_cols=118  Identities=19%  Similarity=0.234  Sum_probs=76.9

Q ss_pred             eeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC-------cceeEEeeCCCCCeeEEEECCCCCEEEEecccE
Q psy12456         43 VTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL-------KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDV  115 (162)
Q Consensus        43 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  115 (162)
                      ++.|.+|...|+.++--.+.+-+++++.|++|++|.++.-       .+.-+++. ++.+|.++.|-.+-++++++...+
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~ScD~gi  806 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIASCDGGI  806 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeeeccCcc
Confidence            5678889888888876666778999999999999999632       12223333 455799999999999999998889


Q ss_pred             EEEEeCCceEEEEee--cCcccEEEEEECC--CCceEEEe-ecCCeEEEee
Q psy12456        116 RVFLCKQWQELAMFN--EHTAMVTGVRFGT--HAHYLASS-SMDRTLKLYS  161 (162)
Q Consensus       116 ~i~~~~~~~~~~~~~--~h~~~v~~~~~s~--~~~~l~s~-s~D~~i~iw~  161 (162)
                      ++|+--....+..+.  ...+.+..++--|  +...+..+ +...+|+++|
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~D  857 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFD  857 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeee
Confidence            998743222222111  1111222232222  34444444 6677888876

>KOG3617|consensus

Probab=97.89  E-value=5e-05  Score=60.81  Aligned_cols=70  Identities=23%  Similarity=0.381  Sum_probs=61.3

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      ++++.|||..-+||.|=.-|.+.+|...+.+....-..|..+|..+.||++|..+.++.+-|.+.+|...
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            4778999999999999999999999977655544445688999999999999999999999999999875

>KOG0882|consensus

Probab=97.85  E-value=0.00012  Score=54.66  Aligned_cols=155  Identities=14%  Similarity=0.164  Sum_probs=98.1

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeC-CCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CC---CEEEEE-eCCCeEEEEEcc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NG---YYLATA-ADENCVKLWDLR   80 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~---~~l~s~-~~d~~v~~wd~~   80 (162)
                      +-..|-+++.+-+|.++++++. |..++++|+..-..+..++...-| ..+.|.. .|   ..++.. -.++.+.++|-+
T Consensus        52 HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~  130 (558)
T KOG0882|consen   52 HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF  130 (558)
T ss_pred             HHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCc
Confidence            3344567788899999999888 999999999876555444432211 1223322 12   133333 356788999976


Q ss_pred             cCc-ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC-ce--------------EEEEeecCcccEEEEEEC
Q psy12456         81 KLK-NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ-WQ--------------ELAMFNEHTAMVTGVRFG  142 (162)
Q Consensus        81 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~-~~--------------~~~~~~~h~~~v~~~~~s  142 (162)
                      ... ....+..-+..+|.++.+++.+..+.+....  +.-|.... .+              -+..+..-+...+++.|+
T Consensus       131 ~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs  210 (558)
T KOG0882|consen  131 GDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS  210 (558)
T ss_pred             CCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEc
Confidence            322 3333333355689999999998888776544  44444331 10              011112234457889999


Q ss_pred             CCCceEEEeecCCeEEEeeC
Q psy12456        143 THAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       143 ~~~~~l~s~s~D~~i~iw~~  162 (162)
                      |++..+.+-+.|+.|+++++
T Consensus       211 p~g~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  211 PDGAQISTLNPDRKVRGFVF  230 (558)
T ss_pred             cccCcccccCcccEEEEEEe
Confidence            99999999999999999863

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.85  E-value=0.0062  Score=46.24  Aligned_cols=65  Identities=20%  Similarity=0.384  Sum_probs=48.2

Q ss_pred             EEeCCCCcEEEEeeCC-----------CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456         14 AQLHPDGLIFGIGTSD-----------SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~d-----------g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      ++.+|.|-.+|....+           ..|+||+. .|+.+.++.-..+.+..+.|..+. .|+.-..||.+++||+.
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            4566766667666544           15899985 567777776555899999998864 56667789999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2041|consensus

Probab=97.79  E-value=0.00024  Score=56.09  Aligned_cols=108  Identities=13%  Similarity=0.217  Sum_probs=76.6

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc---------------eeEEeeCCCCCeeEEEECCCCCEEEEecccE
Q psy12456         51 GPIQALSFSENGYYLATAADENCVKLWDLRKLKN---------------FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDV  115 (162)
Q Consensus        51 ~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  115 (162)
                      ....+++|+.+..+++.|+.||.+++-.+.+...               -+.+.. |...|+-+.|+.+.+.+.+...+.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccccCCCc
Confidence            4678899999999999999999999988754221               112223 445689999999988988887774


Q ss_pred             --EEEEeC--CceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456        116 --RVFLCK--QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus       116 --~i~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                        .||-.-  +|-+...-+..++.|.+++|+.+|+.++..-.||.|.+
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV  141 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence              444321  22222223456677999999999998887777776643

>KOG1008|consensus

Probab=97.78  E-value=4.3e-06  Score=64.54  Aligned_cols=152  Identities=16%  Similarity=0.267  Sum_probs=96.4

Q ss_pred             CcEEEEEeCC-CCcEEEEeeC----CCcEEEEECCCC--eeee--eccC-CCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q psy12456          9 PTLTTAQLHP-DGLIFGIGTS----DSQVQIWDLKKQ--KNVT--DFQL-DAGPIQALSFSENGYYLATAADENCVKLWD   78 (162)
Q Consensus         9 ~~v~~~~~~~-~g~~~a~g~~----dg~i~~wd~~~~--~~~~--~~~~-~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd   78 (162)
                      -.+|+++|++ |.+.||.|-.    |-.+.|||..++  -|..  .|.. -.....+++|-.+.+++.+|...+.+.++|
T Consensus       103 r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifd  182 (783)
T KOG1008|consen  103 RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFD  182 (783)
T ss_pred             ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhh
Confidence            3568999998 7888888854    456899999876  2222  2222 223345788888899999999999999999


Q ss_pred             cccCcceeEEeeCCCCCeeEEEECC-CCCEEEEeccc-EEEEE-eCCc-eEEEEeecCc----ccEEEEEECCCCc-eEE
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCFDQ-SGTYMAVAGTD-VRVFL-CKQW-QELAMFNEHT----AMVTGVRFGTHAH-YLA  149 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~-~~i~~-~~~~-~~~~~~~~h~----~~v~~~~~s~~~~-~l~  149 (162)
                      +|-. .........+ .++.+...| ...|+++-..+ +.+|+ .... .++..+...+    ..+..++|.|... .++
T Consensus       183 lRqs-~~~~~svnTk-~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla  260 (783)
T KOG1008|consen  183 LRQS-LDSVSSVNTK-YVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLA  260 (783)
T ss_pred             hhhh-hhhhhhhhhh-hcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhh
Confidence            9831 1111112122 366777888 67787776543 66776 2222 2222222222    2488999998653 556


Q ss_pred             EeecC-CeEEEeeC
Q psy12456        150 SSSMD-RTLKLYSL  162 (162)
Q Consensus       150 s~s~D-~~i~iw~~  162 (162)
                      +..+| ++|+.+++
T Consensus       261 ~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  261 VLSRDSITIRLYDI  274 (783)
T ss_pred             hhccCcceEEEecc
Confidence            66666 47888764

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.75  E-value=0.0077  Score=45.46  Aligned_cols=156  Identities=15%  Similarity=0.200  Sum_probs=85.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeec--cC------CCCCEEEEEEcc-----CC---CEEEEEe
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF--QL------DAGPIQALSFSE-----NG---YYLATAA   69 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~--~~------~~~~v~~i~~~~-----~~---~~l~s~~   69 (162)
                      +...+|++++.+.-| .+|.|..+|.+.|.|+|....+..-  ..      ....++++.|.-     |+   -.++.|.
T Consensus        84 ~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   84 AKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             --S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             ccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            446789999998555 8999999999999999988877552  12      224677888862     33   4788888


Q ss_pred             CCCeEEEEEccc-Ccc---eeE--EeeCCCCCeeEE-EECC----------------------CCCEEEEecccEEEEEe
Q psy12456         70 DENCVKLWDLRK-LKN---FKT--LQLDPNYEIRDL-CFDQ----------------------SGTYMAVAGTDVRVFLC  120 (162)
Q Consensus        70 ~d~~v~~wd~~~-~~~---~~~--~~~~~~~~v~~~-~~~~----------------------~~~~~~~~~~~~~i~~~  120 (162)
                      ..|.+.+|.+-. ...   +..  .......++..+ .++.                      .+..++++..+++++..
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~  242 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP  242 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence            999999998742 111   110  010112222222 1211                      12344444556787765


Q ss_pred             CCceEEEEeecCcccEEEEEEC-----CCCceEEEeecCCeEEEeeC
Q psy12456        121 KQWQELAMFNEHTAMVTGVRFG-----THAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       121 ~~~~~~~~~~~h~~~v~~~~~s-----~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...+...........+..+.+-     ..+..|+.-..||.|+++.+
T Consensus       243 ~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  243 PKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             T---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred             CCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence            4443333322222233444442     24567778889999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1008|consensus

Probab=97.74  E-value=8.6e-06  Score=62.96  Aligned_cols=151  Identities=17%  Similarity=0.322  Sum_probs=97.1

Q ss_pred             CCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCCeee--eeccCCCCCEEEEEEcc-CCCEEEEEe----CCCeEEEEE
Q psy12456          8 GPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQKNV--TDFQLDAGPIQALSFSE-NGYYLATAA----DENCVKLWD   78 (162)
Q Consensus         8 ~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~i~~~~-~~~~l~s~~----~d~~v~~wd   78 (162)
                      .+.+.|++.+.  +..++++|..+|.|-+-.++....-  .....+..+.++++|++ |.+.|+.|-    .|..+.+||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34455565554  4468999999999999988754321  22345678899999998 566777663    356799999


Q ss_pred             cccC--cceeE--EeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc-eEEEEeecCcccEEEEEECC-CCceEEE
Q psy12456         79 LRKL--KNFKT--LQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW-QELAMFNEHTAMVTGVRFGT-HAHYLAS  150 (162)
Q Consensus        79 ~~~~--~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~-~~~~l~s  150 (162)
                      +.+.  .+...  +.........++||-.+.+++++|...  +++++++.. .....+  .+..+.++...| ...++++
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs  213 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS  213 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence            9654  11111  221122235678998888888888765  555554421 111112  234456677777 6778876


Q ss_pred             eecCCeEEEee
Q psy12456        151 SSMDRTLKLYS  161 (162)
Q Consensus       151 ~s~D~~i~iw~  161 (162)
                      -. |+.|.+||
T Consensus       214 ~~-dg~iAiwD  223 (783)
T KOG1008|consen  214 NS-DGDIAIWD  223 (783)
T ss_pred             cc-cCceeecc
Confidence            65 99999998

>KOG3617|consensus

Probab=97.71  E-value=0.00013  Score=58.49  Aligned_cols=105  Identities=12%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             EEEEccCCCEEEEEeC----CCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc--cEEEEEeCCceEEEE
Q psy12456         55 ALSFSENGYYLATAAD----ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT--DVRVFLCKQWQELAM  128 (162)
Q Consensus        55 ~i~~~~~~~~l~s~~~----d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~  128 (162)
                      -++|+|...+++.++-    .|.|.+|-- +.++-...  .....+.++||+|..-.++.|-.  +..+|.....+.-..
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEec-CCCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            3578888888887764    366777632 22221111  11123567999999877777644  366666554444445


Q ss_pred             eecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        129 FNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       129 ~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...|..++..+.|||+|..++|+..=|.+.+|..
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~  130 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRY  130 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEe
Confidence            6789999999999999999999999999999973

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.69  E-value=0.0016  Score=49.57  Aligned_cols=97  Identities=18%  Similarity=0.303  Sum_probs=57.2

Q ss_pred             EEEeCCCCcEEEEeeC-CCc--EEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CCe--EEEEEcccCccee
Q psy12456         13 TAQLHPDGLIFGIGTS-DSQ--VQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-ENC--VKLWDLRKLKNFK   86 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~~--v~~wd~~~~~~~~   86 (162)
                      .-+|+|||+.++.... ||.  |.++|++.+. ...+..-.+.-..=.|+|||++++-.+. .|.  |.++|..... ..
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-~~  319 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-VT  319 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-ee
Confidence            4579999997765544 565  5556776655 3334332222235579999998887764 444  4444544322 23


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEec
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~  112 (162)
                      .......... .-.++|+|++++..+
T Consensus       320 riT~~~~~~~-~p~~SpdG~~i~~~~  344 (425)
T COG0823         320 RLTFSGGGNS-NPVWSPDGDKIVFES  344 (425)
T ss_pred             EeeccCCCCc-CccCCCCCCEEEEEe
Confidence            3332222222 557899999999877

>KOG2079|consensus

Probab=97.66  E-value=0.00046  Score=56.59  Aligned_cols=114  Identities=16%  Similarity=0.220  Sum_probs=75.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .+..++.+++.-..+-+++.|++.|.+...|++.. .+...=..-.++|++++|+.+|..++.|-.+|.|.+||....+.
T Consensus        85 ~e~~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~  164 (1206)
T KOG2079|consen   85 LEDIAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI  164 (1206)
T ss_pred             ccCCCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence            34455555655566778999999999999998764 11111111247999999999999999999999999999977555


Q ss_pred             eeEEeeC--CCCCeeEEEECCCCCEEEEecccEEEEE
Q psy12456         85 FKTLQLD--PNYEIRDLCFDQSGTYMAVAGTDVRVFL  119 (162)
Q Consensus        85 ~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~i~~  119 (162)
                      .+.+..+  +...+--+-+..++..++++...+.+|.
T Consensus       165 l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gsf~~  201 (1206)
T KOG2079|consen  165 LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGSFWK  201 (1206)
T ss_pred             eeeeeecCCccceEEEEEEeCCCcEEEEccCCCceEE
Confidence            5444322  2222333444445556666665555554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.66  E-value=0.0052  Score=47.05  Aligned_cols=133  Identities=12%  Similarity=0.242  Sum_probs=71.9

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC----------c-ceeEE
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL----------K-NFKTL   88 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~----------~-~~~~~   88 (162)
                      |.+|+..+.+ .|.+||+.+++.++.+...  +|..+.|++++.+++..+.+. +.+++....          + .+...
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~-i~il~~~~~~~~~~~~~g~e~~f~~~  192 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDS-IYILKYNLEAVAAIPEEGVEDAFELI  192 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-S-EEEEEE-HHHHHHBTTTB-GGGEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCe-EEEEEecchhcccccccCchhceEEE
Confidence            8888877654 8999999999999998854  489999999999999998765 666554321          0 11211


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      . +-...|.+.+|..+ .++-+...  ++..+..+ ....+..-..++.=+.+.|+.+.+.....|+.+..+.
T Consensus       193 ~-E~~~~IkSg~W~~d-~fiYtT~~--~lkYl~~G-e~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~  260 (443)
T PF04053_consen  193 H-EISERIKSGCWVED-CFIYTTSN--HLKYLVNG-ETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYE  260 (443)
T ss_dssp             E-EE-S--SEEEEETT-EEEEE-TT--EEEEEETT-EEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE
T ss_pred             E-EecceeEEEEEEcC-EEEEEcCC--eEEEEEcC-CcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEE
Confidence            1 11335888889876 55544444  33333222 2222333344566666666666666667777776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.64  E-value=0.0049  Score=50.13  Aligned_cols=125  Identities=12%  Similarity=0.203  Sum_probs=81.9

Q ss_pred             eCCCcEEEEECCCCeeeeeccCCCC-CEEEEEEccC-------CCEEEEEeCCCeEEEEEcccCc--cee--EEeeCCCC
Q psy12456         27 TSDSQVQIWDLKKQKNVTDFQLDAG-PIQALSFSEN-------GYYLATAADENCVKLWDLRKLK--NFK--TLQLDPNY   94 (162)
Q Consensus        27 ~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~i~~~~~-------~~~l~s~~~d~~v~~wd~~~~~--~~~--~~~~~~~~   94 (162)
                      .....+.-.|+..|+.+..++.+.. +|..+  .|+       ...-+.|-.+..+.-||.|...  .+.  ..+.....
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~  578 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN  578 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence            3457788999999999999998764 36544  443       2234556667779999998532  221  11223344


Q ss_pred             CeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         95 EIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        95 ~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      ...|++-+.+| +||+|+.+  +|+|+-.....-..+.+-..+|.++.-+.||+|++..+..
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t  639 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT  639 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence            57888877777 55677665  7776522111122355667899999999999999766544

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.63  E-value=0.00028  Score=36.41  Aligned_cols=32  Identities=19%  Similarity=0.328  Sum_probs=28.9

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECC
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK   38 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~   38 (162)
                      ....|+.+.|+|...++|.|+.+|.|.++.++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34579999999999999999999999999883

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.63  E-value=0.0042  Score=46.40  Aligned_cols=132  Identities=13%  Similarity=0.055  Sum_probs=77.8

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE-eeCCCCCeeE
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL-QLDPNYEIRD   98 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~-~~~~~~~v~~   98 (162)
                      +..+.+++.+|.+..||.++++.+......  .....+  .++..+..++.|+.+..+|..+.+.+-.. ..... ....
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~-~~ss  315 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR-QLTA  315 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC-cccc
Confidence            345666778999999999999877655421  111122  24567888889999999999776543222 11111 1111


Q ss_pred             EEECCCCCEEEEecccEE--EEEeCCceEEEEeecCcccEEE-EEECCCCceEEEeecCCeEEEe
Q psy12456         99 LCFDQSGTYMAVAGTDVR--VFLCKQWQELAMFNEHTAMVTG-VRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ...  .+..+.+++.+..  +++..+.+.+.+++.+...+.. ..+. ++ .|..++.||.|..+
T Consensus       316 p~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       316 PAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            112  3456667766644  4445566777666655543322 2222 34 46678889988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2079|consensus

Probab=97.57  E-value=0.0043  Score=51.24  Aligned_cols=72  Identities=19%  Similarity=0.403  Sum_probs=58.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEE---EccCCCEEEEEeCCCeEEEEEc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALS---FSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~---~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      ....+|++++|+-+|.+++.|-.+|.|.+||+..+++++.+..|..|..++-   +..++..++++..-|.  +|.+
T Consensus       128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            4567899999999999999999999999999999999999888776655543   3345567888777774  6665

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.53  E-value=0.022  Score=43.16  Aligned_cols=101  Identities=15%  Similarity=0.216  Sum_probs=63.9

Q ss_pred             cEEEEEeCCCCcEEEEee-CCCc----EEEEECCCCeeeee-ccCCCCCEEEEEEccCCCEEEEEeCCC-----------
Q psy12456         10 TLTTAQLHPDGLIFGIGT-SDSQ----VQIWDLKKQKNVTD-FQLDAGPIQALSFSENGYYLATAADEN-----------   72 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~-~dg~----i~~wd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~d~-----------   72 (162)
                      .+....++|+|+++|.+- .+|.    ++++|+++++.+.. +..-  .-..++|.++++.|+....+.           
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            445788999999998763 3344    99999999977653 2221  112389999988776665333           


Q ss_pred             eEEEEEcccCcce--eEEeeCCCCC-eeEEEECCCCCEEEEec
Q psy12456         73 CVKLWDLRKLKNF--KTLQLDPNYE-IRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        73 ~v~~wd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~~~~~~~  112 (162)
                      .|..|++.+....  ..+....... ...+..++++++++...
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~  245 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS  245 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence            3677887655432  2233222222 56788899999987643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.52  E-value=0.0083  Score=47.63  Aligned_cols=147  Identities=14%  Similarity=0.097  Sum_probs=78.8

Q ss_pred             CcEEEEEeCCCCcEEEEee------CCCc--EEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC-CeEEEEEc
Q psy12456          9 PTLTTAQLHPDGLIFGIGT------SDSQ--VQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE-NCVKLWDL   79 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~------~dg~--i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-~~v~~wd~   79 (162)
                      ..+...+++|+|+.+|..-      .|+.  +.+.+.. +.. ..+..- .....-.|+|+|..+++.... ..+++.+-
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence            4678899999999887766      2444  4444542 222 222211 235667899998888877533 22222221


Q ss_pred             ccCcceeEEee-------CCCCCeeEEEECCCCCEEEEecccEEEEE---eC--Cce-EE---EEee-cCcccEEEEEEC
Q psy12456         80 RKLKNFKTLQL-------DPNYEIRDLCFDQSGTYMAVAGTDVRVFL---CK--QWQ-EL---AMFN-EHTAMVTGVRFG  142 (162)
Q Consensus        80 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~i~~---~~--~~~-~~---~~~~-~h~~~v~~~~~s  142 (162)
                      .....+.....       .....|..+.|||+|+.++.... .+++.   .+  .++ .+   ..+. .-...+.++.|.
T Consensus       427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence            11011110000       12345899999999998877543 34444   11  121 11   1122 223346789999


Q ss_pred             CCCceEEEeecCCeEEEe
Q psy12456        143 THAHYLASSSMDRTLKLY  160 (162)
Q Consensus       143 ~~~~~l~s~s~D~~i~iw  160 (162)
                      +++++++ +..+....+|
T Consensus       506 ~~~~L~V-~~~~~~~~v~  522 (591)
T PRK13616        506 TGDSLVV-GRSDPEHPVW  522 (591)
T ss_pred             cCCEEEE-EecCCCCceE
Confidence            8888654 4444433444

>KOG1645|consensus

Probab=97.50  E-value=0.00052  Score=50.67  Aligned_cols=88  Identities=20%  Similarity=0.172  Sum_probs=63.5

Q ss_pred             EEEEECCCCeeeeeccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCE-EE
Q psy12456         32 VQIWDLKKQKNVTDFQLDAGPIQALSFSENGY-YLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTY-MA  109 (162)
Q Consensus        32 i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~  109 (162)
                      +++.+..+-+...-+..+...|+.++|+|..+ ++..++.+.+|++.|+++...+..+..+  ..+.++||.-+... +-
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccCCcceeE
Confidence            55555544455555566777899999999776 8889999999999999987777766654  46899999987654 44


Q ss_pred             Eeccc--EEEEEeC
Q psy12456        110 VAGTD--VRVFLCK  121 (162)
Q Consensus       110 ~~~~~--~~i~~~~  121 (162)
                      .|..+  +-||+.+
T Consensus       253 aGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMR  266 (463)
T ss_pred             EeccCceEEEEEcc
Confidence            45445  4455544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.46  E-value=0.0064  Score=46.35  Aligned_cols=141  Identities=16%  Similarity=0.154  Sum_probs=81.4

Q ss_pred             CCcEEEEEeCCCCcEEEEeeC-C---CcEEEEECCCCeeee--eccCCCCCEEEEEEccCCCEEEEEe-CCC--eEEEEE
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTS-D---SQVQIWDLKKQKNVT--DFQLDAGPIQALSFSENGYYLATAA-DEN--CVKLWD   78 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~-d---g~i~~wd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~-~d~--~v~~wd   78 (162)
                      ...+..-+|+|++..++.-.. .   -.+.++|+++++...  .+.++.   ..-+|+|||++|+... .|+  .|.+.|
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~d  268 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMD  268 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEc
Confidence            344555678888886544321 2   248889998875433  334433   3458999998877664 455  456667


Q ss_pred             cccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCC-ceEEEEeecCcccEEEEEECCCCceEEEeec
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                      +...+. ..+.. ....-..=.|+|+|++++-.+..   -.||..+. ......+......-..-.|||++++++-.+.
T Consensus       269 l~~~~~-~~Lt~-~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~  345 (425)
T COG0823         269 LDGKNL-PRLTN-GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESS  345 (425)
T ss_pred             CCCCcc-eeccc-CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEec
Confidence            765442 22211 11112355799999999887654   34444322 1222333322222225678999999887664

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.44  E-value=0.0075  Score=41.80  Aligned_cols=130  Identities=13%  Similarity=0.068  Sum_probs=69.8

Q ss_pred             CCcEEEEECCCCeeeeeccCC--CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC
Q psy12456         29 DSQVQIWDLKKQKNVTDFQLD--AGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT  106 (162)
Q Consensus        29 dg~i~~wd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  106 (162)
                      +|+|..||.++++.+......  ....... ..+++.++++++.++.+..||..+.+.+-.+.....  +...-...++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAPVVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGEEEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccceeeecccc
Confidence            689999999999988777542  1222211 223566788888999999999988776555544222  11111222333


Q ss_pred             EEEEe-cccEEEEEeCCceEEEEe-ecCc---ccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        107 YMAVA-GTDVRVFLCKQWQELAMF-NEHT---AMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       107 ~~~~~-~~~~~i~~~~~~~~~~~~-~~h~---~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .++.. +..+..++..+++.+-+. ....   ..........++..++.+..++.+..+|
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d  138 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALD  138 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEE
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEe
Confidence            33232 222555555555554442 2111   1111222222356666666677777665

...

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.43  E-value=0.00084  Score=34.61  Aligned_cols=29  Identities=14%  Similarity=0.282  Sum_probs=27.4

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456         51 GPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus        51 ~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      .+|..++|+|...+++.+..+|.|.+|.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            56999999999999999999999999998

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.37  E-value=0.025  Score=40.14  Aligned_cols=146  Identities=16%  Similarity=0.159  Sum_probs=84.2

Q ss_pred             CCCcEEEEEeCCCCcEEEEee-CCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEE-cccCcc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGT-SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD-LRKLKN   84 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~-~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd-~~~~~~   84 (162)
                      ....+.+.+++++|+.+|... .++.-.||-.+.+....... ....+..-+|++++........+...+++. ....+.
T Consensus        22 ~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   22 GGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             CCccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            334788999999999776665 23333343333343333321 223667779999977666666666666663 222221


Q ss_pred             e-eEEeeCCCC-CeeEEEECCCCCEEEEecc---cEEEEEe----C-Cc------eEEEEeecCcccEEEEEECCCCceE
Q psy12456         85 F-KTLQLDPNY-EIRDLCFDQSGTYMAVAGT---DVRVFLC----K-QW------QELAMFNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        85 ~-~~~~~~~~~-~v~~~~~~~~~~~~~~~~~---~~~i~~~----~-~~------~~~~~~~~h~~~v~~~~~s~~~~~l  148 (162)
                      . ......... .|..+.++|+|.-++.-..   +.+++..    . ..      ..+.........+..++|.+++.++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            1 111111111 6999999999998877652   2444432    1 11      1122222334578999999998877


Q ss_pred             EEeec
Q psy12456        149 ASSSM  153 (162)
Q Consensus       149 ~s~s~  153 (162)
                      +.+..
T Consensus       181 V~~~~  185 (253)
T PF10647_consen  181 VLGRS  185 (253)
T ss_pred             EEeCC
Confidence            66544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG3621|consensus

Probab=97.37  E-value=0.0041  Score=49.06  Aligned_cols=109  Identities=14%  Similarity=0.117  Sum_probs=74.3

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeC-CCCCeeEEEECCCCCEEEEecccEEEEEeC--Cc-----
Q psy12456         52 PIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLD-PNYEIRDLCFDQSGTYMAVAGTDVRVFLCK--QW-----  123 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~--~~-----  123 (162)
                      .|.--+++..+.+++.|+.-|.+.+|+-...++ ...+.. ....+..++++++..++|.|+...+|....  ..     
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            454556677889999999999999998544332 222211 223456678889998888888776655432  11     


Q ss_pred             eEEEEe-ecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        124 QELAMF-NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       124 ~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..+... ..|+..|+++.|++++..+-+|..-|+|.+-.
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~  152 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE  152 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence            111111 24788899999999999999998888887643

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.34  E-value=0.033  Score=40.81  Aligned_cols=136  Identities=19%  Similarity=0.280  Sum_probs=81.9

Q ss_pred             CcEEEEeeC----------CCcEEEEECCCC----eee---eeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456         20 GLIFGIGTS----------DSQVQIWDLKKQ----KNV---TDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus        20 g~~~a~g~~----------dg~i~~wd~~~~----~~~---~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      ..++++|+.          .|.+.++++.+.    ..+   ...+ ..++|.+++-- .+ +|+.+.. +.|.+|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~-~lv~~~g-~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-NG-RLVVAVG-NKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-TT-EEEEEET-TEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-CC-EEEEeec-CEEEEEEccCc
Confidence            568887775          288999999884    122   2222 35789888765 33 4554443 67999999876


Q ss_pred             c-ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC-ceEEEEe--ecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         83 K-NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ-WQELAMF--NEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        83 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~-~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      + ....-..+....+.++...  +.++++|...  +.++.++. ...+..+  ......++++.|-++++.++.+..+|.
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred             ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence            6 3333333333345555544  5588887654  55554443 2222222  334566889988756678888999999


Q ss_pred             EEEee
Q psy12456        157 LKLYS  161 (162)
Q Consensus       157 i~iw~  161 (162)
                      +.++.
T Consensus       196 l~~l~  200 (321)
T PF03178_consen  196 LFVLR  200 (321)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98875

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.28  E-value=0.018  Score=45.85  Aligned_cols=114  Identities=18%  Similarity=0.223  Sum_probs=76.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc-CCCCCEEEEEEc--cCCCEEEEEeCCCeEEEEEccc-
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ-LDAGPIQALSFS--ENGYYLATAADENCVKLWDLRK-   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~~--~~~~~l~s~~~d~~v~~wd~~~-   81 (162)
                      ++-...+-+.-+.-++..++-+...++.|||.+.+....+-. ...++|..+.|.  |+++.+++.+....|.+|-... 
T Consensus        27 T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~  106 (631)
T PF12234_consen   27 TGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY  106 (631)
T ss_pred             cCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence            344445555555556655555556679999998876443322 345789999986  6899999999999999887521 


Q ss_pred             --------CcceeEEe--eCCCCCeeEEEECCCCCEEEEecccEEEEE
Q psy12456         82 --------LKNFKTLQ--LDPNYEIRDLCFDQSGTYMAVAGTDVRVFL  119 (162)
Q Consensus        82 --------~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~  119 (162)
                              +..+.+..  .....+|.+.+|.++|.+++.++..+.|++
T Consensus       107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d  154 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD  154 (631)
T ss_pred             hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence                    11222222  223356889999999988877766666654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.27  E-value=0.002  Score=52.25  Aligned_cols=71  Identities=14%  Similarity=0.318  Sum_probs=53.4

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      .+..-+|++-+.+| ++|+|+.+|.||+||--.......|++-..||.+|..+.||++++..+. ..+.+++.
T Consensus       576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            44556888888888 6889999999999994322333445665689999999999999876554 55666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.23  E-value=0.043  Score=43.76  Aligned_cols=108  Identities=17%  Similarity=0.213  Sum_probs=63.0

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEEC--CCCCEEEEecccEEEEEe---------
Q psy12456         52 PIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFD--QSGTYMAVAGTDVRVFLC---------  120 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~i~~~---------  120 (162)
                      ...-+.-+.-++..+.-+...++.+||.+...............|.++.|.  |+++.+++.+...+|..+         
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            333344444444333333445799999986554333333345578999885  678777776665333322         


Q ss_pred             --CCceEEEEe--ecCc-ccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        121 --KQWQELAMF--NEHT-AMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       121 --~~~~~~~~~--~~h~-~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                        ..|..++.+  ..|+ .+|.+..|.++|.+++.++  ..+.+++
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence              123444443  3444 5788999999998876554  3455543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4640|consensus

Probab=97.22  E-value=0.0026  Score=49.60  Aligned_cols=66  Identities=18%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             eeEEEECCCCCEEEEecccEEE--EEeCCceEEEEeecCcccEE-EEEECCCCceEEEeecCCeEEEeeC
Q psy12456         96 IRDLCFDQSGTYMAVAGTDVRV--FLCKQWQELAMFNEHTAMVT-GVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        96 v~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +--+.|+|....+|.+..+.++  +-.+ |+.+-.+..|...++ +++|.|||+.+|.|=.||+|++.|+
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv   91 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV   91 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence            6678999999999998777543  3334 788888887888888 9999999999999999999999884

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.20  E-value=0.055  Score=40.45  Aligned_cols=64  Identities=17%  Similarity=0.127  Sum_probs=46.8

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      +..+.+++.+|.+.-+|..+++.+..+..........+.  ++..++.++.++.+..+|..+.+..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~  128 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKEL  128 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEe
Confidence            556778888999999999999988776654322222222  4667888889999999998776643

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4649|consensus

Probab=97.14  E-value=0.045  Score=38.82  Aligned_cols=71  Identities=8%  Similarity=0.063  Sum_probs=56.7

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCC-CEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEee
Q psy12456         19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG-PIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        19 ~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      -|..++.|+..|.+.+.+.++|+.+..|...+. .++ -...+++..+..|+.|++...-|.++...+.+.+.
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a~~d~~~glIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-eEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence            356789999999999999999988888875432 222 35567899999999999999999998887766543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.14  E-value=0.042  Score=38.02  Aligned_cols=139  Identities=18%  Similarity=0.078  Sum_probs=77.3

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeec-cCCC---CCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCC-
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDF-QLDA---GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNY-   94 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~-~~~~---~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~-   94 (162)
                      +..+.+++.++.+..+|.++++.+... ....   ..........++..++.+..++.+..+|+++.+.+-........ 
T Consensus        76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~  155 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG  155 (238)
T ss_dssp             TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred             ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence            334556667889999999999888773 3221   11122233334778888888999999999887765555442211 


Q ss_pred             --------CeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         95 --------EIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        95 --------~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                              .+..-....++..+++....  ..+ +..+.+.+-+..  ...+..+ ..+.+..+..++.|+.+..||+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             S--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred             CcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence                    01122223344444333333  333 555555432212  2222221 2345666666668999999984

...

>KOG2395|consensus

Probab=97.09  E-value=0.023  Score=43.91  Aligned_cols=130  Identities=13%  Similarity=0.195  Sum_probs=82.3

Q ss_pred             EEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCC-------EEEEEeCCCeEEEEEcccCcc-----eeEEe
Q psy12456         22 IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY-------YLATAADENCVKLWDLRKLKN-----FKTLQ   89 (162)
Q Consensus        22 ~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~-------~l~s~~~d~~v~~wd~~~~~~-----~~~~~   89 (162)
                      ++..|.....+.-.|+..|+.+.+++.++. |.-+.+.|+..       .=+.|-.|..|.-||.|-...     .+..+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            345556667788889999999999998876 66667777542       122355567788899873221     11112


Q ss_pred             eCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeec
Q psy12456         90 LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                      ........|.+-..+| ++++||.+  +++|+......-..+.+-..+|.++.-+.+|++++..+.
T Consensus       427 y~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~  491 (644)
T KOG2395|consen  427 YSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK  491 (644)
T ss_pred             cccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence            2233445666655555 66777765  666653111122236677789999999999999876553

>PRK13684 Ycf48-like protein; Provisional

Probab=97.06  E-value=0.073  Score=39.37  Aligned_cols=149  Identities=15%  Similarity=0.208  Sum_probs=81.0

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc-CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc---cCcc
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ-LDAGPIQALSFSENGYYLATAADENCVKLWDLR---KLKN   84 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~---~~~~   84 (162)
                      ..+..+.+.|++.++++|......+.+|- .++.-.... .....+.++.+.++++.++.+ ..+.+.+=.-.   +++.
T Consensus       173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK  250 (334)
T ss_pred             ceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence            36788999999988877665332233332 222222222 234578899999998876655 45655431111   1121


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeC---CceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK---QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ...........+..+.+.|++..++++.....+...+   +|+.+.....-......+.|..+++.++ .+..|.|--|
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~  328 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRY  328 (334)
T ss_pred             ccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEe
Confidence            1110011123467888999888777765544444333   3444332122223577777776666665 4456776554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.00  E-value=0.067  Score=37.87  Aligned_cols=150  Identities=18%  Similarity=0.315  Sum_probs=87.0

Q ss_pred             EEEEEeCCC-CcEEEEeeCCCcEEEEECCCCeeeeeccCCC-CCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc-----
Q psy12456         11 LTTAQLHPD-GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAADENCVKLWDLRKLK-----   83 (162)
Q Consensus        11 v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~-----   83 (162)
                      ++.+.++|+ +.++|+....+.|..++. +|+.++.++... +-.-+|++..++.++++--.++.+.++++....     
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~  102 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDR  102 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--E
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccch
Confidence            899999996 668999999999998996 478887776442 457788998888777776678999988883321     


Q ss_pred             -ceeEEeeC----CCCCeeEEEECCCCCEEEEeccc--EEEEEeCC---ceEE--EEe------ecCcccEEEEEECCC-
Q psy12456         84 -NFKTLQLD----PNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ---WQEL--AMF------NEHTAMVTGVRFGTH-  144 (162)
Q Consensus        84 -~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~---~~~~--~~~------~~h~~~v~~~~~s~~-  144 (162)
                       ....+...    ....+..++|+|.+..+..+-..  ..++..+.   ...+  ...      ......++++.+.|. 
T Consensus       103 ~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t  182 (248)
T PF06977_consen  103 ADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRT  182 (248)
T ss_dssp             EEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTT
T ss_pred             hhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCC
Confidence             11222221    22347899999976555555333  56666543   1111  111      123345788888875 


Q ss_pred             CceEEEeecCCeEEEee
Q psy12456        145 AHYLASSSMDRTLKLYS  161 (162)
Q Consensus       145 ~~~l~s~s~D~~i~iw~  161 (162)
                      +++++-....+.+-..|
T Consensus       183 ~~lliLS~es~~l~~~d  199 (248)
T PF06977_consen  183 GHLLILSDESRLLLELD  199 (248)
T ss_dssp             TEEEEEETTTTEEEEE-
T ss_pred             CeEEEEECCCCeEEEEC
Confidence            45556555566655544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.00  E-value=0.062  Score=39.58  Aligned_cols=125  Identities=15%  Similarity=0.180  Sum_probs=78.0

Q ss_pred             CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC----------CCeEEEEEcccCcceeEEeeCCC--C---
Q psy12456         30 SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD----------ENCVKLWDLRKLKNFKTLQLDPN--Y---   94 (162)
Q Consensus        30 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~----------d~~v~~wd~~~~~~~~~~~~~~~--~---   94 (162)
                      +++.++|.++++.+-.+..  +-.-.+..+|+++.+.+++.          .-.|.+||..+.+.........+  .   
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            5799999999887766653  23344678999998887643          33689999998876665554332  1   


Q ss_pred             -CeeEEEECCCCCEEEEeccc----EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         95 -EIRDLCFDQSGTYMAVAGTD----VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        95 -~v~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                       ......++.+++++.+....    +.|.+....+.+.++... + +..+-=++ ++-|.+-+.||.+.-
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~-~~~F~~lC~DGsl~~  161 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSG-NRGFSMLCGDGSLLT  161 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEE-TTEEEEEETTSCEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecC-CCceEEEecCCceEE
Confidence             12346888999998886543    777777776666665431 1 22221122 234666777876654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1275|consensus

Probab=97.00  E-value=0.014  Score=47.61  Aligned_cols=90  Identities=18%  Similarity=0.230  Sum_probs=69.1

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEE
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDL   99 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~   99 (162)
                      +..+.-|+-...+..+|+++.+..+........|.-|.  .+++++.+|...|+|.+-|.++.+.++++..|.. .+.  
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~-siS--  221 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG-SIS--  221 (1118)
T ss_pred             CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccc-cee--
Confidence            44566677778899999999888777665554565444  4678999999999999999999998888887654 454  


Q ss_pred             EECCCCCEEEEeccc
Q psy12456        100 CFDQSGTYMAVAGTD  114 (162)
Q Consensus       100 ~~~~~~~~~~~~~~~  114 (162)
                      .|+-+|..+++++..
T Consensus       222 DfDv~GNlLitCG~S  236 (1118)
T KOG1275|consen  222 DFDVQGNLLITCGYS  236 (1118)
T ss_pred             eeeccCCeEEEeecc
Confidence            566778889888754

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=96.96  E-value=0.1  Score=39.53  Aligned_cols=143  Identities=15%  Similarity=0.204  Sum_probs=82.5

Q ss_pred             EEEeCCCCcEEEEeeCCCcEEEEECCCCeee-eecc-CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc-----ce
Q psy12456         13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQ-LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK-----NF   85 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~-~~~~-~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~-----~~   85 (162)
                      .+...++|.++++|.....++-||-  +... .... .....+.++.+.+++..++.+ .+|.+..=+ ...+     ..
T Consensus       243 ~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S~-d~G~~~~~~~f  318 (398)
T PLN00033        243 TVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVSK-GTGLTEEDFDF  318 (398)
T ss_pred             eEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEec-CCCCcccccce
Confidence            3567788888888776554555653  2221 1111 223568899999998877655 456543321 1111     11


Q ss_pred             eEEeeC-CCCCeeEEEECCCCCEEEEecccEEEEEeC---CceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         86 KTLQLD-PNYEIRDLCFDQSGTYMAVAGTDVRVFLCK---QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ...... ....+.++.+.+++..+++|..........   +|+.+..-..-......+.|.++++.+++| .+|.|--|
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            222111 123478889999998888886654444332   344443223334567799998777777655 57766544

>KOG2444|consensus

Probab=96.93  E-value=0.0039  Score=42.93  Aligned_cols=137  Identities=14%  Similarity=0.104  Sum_probs=69.9

Q ss_pred             EEEeeCCCcEEEEECCCCeeeeec-cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeE-EE
Q psy12456         23 FGIGTSDSQVQIWDLKKQKNVTDF-QLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRD-LC  100 (162)
Q Consensus        23 ~a~g~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~-~~  100 (162)
                      +...+.||.|+-++++..+.-+.- ..+...-   ....-+..++.|..++.|.+|+..-.-............+.+ +.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            334455666666666543321111 1111111   122235568899999999998875211111110001112221 11


Q ss_pred             ECCCCCEEEEecccE--EEEEeCCceEEEEeecCc-ccEEEEEECCCCceEEEe--ecCCeEEEeeC
Q psy12456        101 FDQSGTYMAVAGTDV--RVFLCKQWQELAMFNEHT-AMVTGVRFGTHAHYLASS--SMDRTLKLYSL  162 (162)
Q Consensus       101 ~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~--s~D~~i~iw~~  162 (162)
                      -..++.+..++..+.  +.+.....+.+.....|. .++....-+..+++++.+  |.|..++.|++
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence            122334566666664  444444455555556666 455555555566777777  88888888875

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.82  E-value=0.011  Score=43.95  Aligned_cols=96  Identities=20%  Similarity=0.241  Sum_probs=60.5

Q ss_pred             CCCCcEEEEe---------eCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456         17 HPDGLIFGIG---------TSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        17 ~~~g~~~a~g---------~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      |||+++++..         +..+.+.|+|+++++....... ...+....|||+|+.++.... +.|.++++...+..+.
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEe
Confidence            5788877662         2246688999998765544333 456788999999999988864 6788888754432211


Q ss_pred             EeeC--------C--------CCCeeEEEECCCCCEEEEeccc
Q psy12456         88 LQLD--------P--------NYEIRDLCFDQSGTYMAVAGTD  114 (162)
Q Consensus        88 ~~~~--------~--------~~~v~~~~~~~~~~~~~~~~~~  114 (162)
                      ....        +        -..-..+.|||++++|+....|
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            1100        0        1123568899999999987654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1832|consensus

Probab=96.74  E-value=0.0027  Score=51.74  Aligned_cols=117  Identities=12%  Similarity=0.175  Sum_probs=78.4

Q ss_pred             eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc----EE
Q psy12456         41 KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD----VR  116 (162)
Q Consensus        41 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~  116 (162)
                      +..++|..|....++++|+.+.++|+.|+..|.|++|+..+.......+.| ..+++-+.=+.+|..+++.+.-    ..
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCcceeeeeccccCchHH
Confidence            456677788888999999999999999999999999999887766666554 4468888878888777765432    34


Q ss_pred             EEEeCC-ceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        117 VFLCKQ-WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       117 i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +|.... +.+..+|.+    -.+++|+...+.-+.|..-..+.+||+
T Consensus      1171 LW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDV 1213 (1516)
T ss_pred             HhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEec
Confidence            554332 233333433    345778755443333333344566663

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.73  E-value=0.13  Score=41.15  Aligned_cols=126  Identities=12%  Similarity=0.051  Sum_probs=69.0

Q ss_pred             CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe------CCCe--EEEEEcccCcceeEEeeCCCCCeeEEE
Q psy12456         29 DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA------DENC--VKLWDLRKLKNFKTLQLDPNYEIRDLC  100 (162)
Q Consensus        29 dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~------~d~~--v~~wd~~~~~~~~~~~~~~~~~v~~~~  100 (162)
                      +|.+.-.+-..-.++....+....+.+.+++|+|+.++...      .|..  +.+++... .. ..+.. .. ....-.
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~-~~t~Ps  403 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GH-SLTRPS  403 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CC-CCCCce
Confidence            67776655333344443333334678899999999887765      2443  44444422 11 22211 11 356779


Q ss_pred             ECCCCCEEEEeccc-EEEEEeC--CceEEEE--ee------cCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456        101 FDQSGTYMAVAGTD-VRVFLCK--QWQELAM--FN------EHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus       101 ~~~~~~~~~~~~~~-~~i~~~~--~~~~~~~--~~------~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      |+|+|..+.+.... -..+...  ....+..  ..      .....|..+.|||||..++-.. ++.|.+
T Consensus       404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            99998877776432 1111111  1111110  10      2345799999999999776544 455543

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.70  E-value=0.14  Score=37.43  Aligned_cols=145  Identities=13%  Similarity=0.154  Sum_probs=75.5

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-eeeeccCC-CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC-cc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-NVTDFQLD-AGPIQALSFSENGYYLATAADENCVKLWDLRKL-KN   84 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~-~~   84 (162)
                      ..+|+++.-. +|. ++++. ++.+.+|++...+ ....-..+ .-.+.++..  .+++++.|+..+.+.++.++.. ..
T Consensus        88 ~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~  162 (321)
T PF03178_consen   88 KGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNK  162 (321)
T ss_dssp             SS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-
T ss_pred             cCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCE
Confidence            3557777666 454 43333 4789999998877 33222211 124555444  4669999998888887755431 11


Q ss_pred             eeEE-eeCCCCCeeEEEECCCCCEEEEecccEEEEE--eCC-----------ceEEEEeecCcccEEEE---EECCC--C
Q psy12456         85 FKTL-QLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL--CKQ-----------WQELAMFNEHTAMVTGV---RFGTH--A  145 (162)
Q Consensus        85 ~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~--~~~-----------~~~~~~~~~h~~~v~~~---~~s~~--~  145 (162)
                      +... +......+.++++-+++..++.+..+..++.  ...           ......+. ....|+.+   ++.|.  +
T Consensus       163 l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~  241 (321)
T PF03178_consen  163 LILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGS  241 (321)
T ss_dssp             EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSS
T ss_pred             EEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCC
Confidence            2222 1122334778888766667777776654443  321           11222233 23457776   44452  1


Q ss_pred             ------ceEEEeecCCeEE
Q psy12456        146 ------HYLASSSMDRTLK  158 (162)
Q Consensus       146 ------~~l~s~s~D~~i~  158 (162)
                            ..++-++.+|.|.
T Consensus       242 ~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  242 SESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             S-TTEEEEEEEEETTS-EE
T ss_pred             CcccccceEEEEecCCEEE
Confidence                  2366677888876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.19  Score=37.84  Aligned_cols=141  Identities=14%  Similarity=0.172  Sum_probs=86.7

Q ss_pred             cEEEEEeCCCCcEEEEeeC---CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcccCcce
Q psy12456         10 TLTTAQLHPDGLIFGIGTS---DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA-DENCVKLWDLRKLKNF   85 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d~~v~~wd~~~~~~~   85 (162)
                      ....++++|+++.+.++..   ++++.+.|..+++.+.+...-..| ..++++|+++.+.... .++.+.+.|.......
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            4456889999976655555   689999999988888876544456 7899999999666665 6789999997654433


Q ss_pred             e-EE--eeCCCCCeeEEEECCCCCEEEEeccc---EEEEE--eCCceEEEE-eecCcccEEEEEECCCCceEEEe
Q psy12456         86 K-TL--QLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFL--CKQWQELAM-FNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        86 ~-~~--~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~--~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      . .-  ..........+.++|++.++.+....   ..+..  ......... ...-......+...|++.++-..
T Consensus       196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA  270 (381)
T ss_pred             ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE
Confidence            2 10  01111224667899999866554332   23333  333323322 11111034456778888766444

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.55  E-value=0.068  Score=40.64  Aligned_cols=80  Identities=15%  Similarity=0.226  Sum_probs=55.3

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCC-CEEEEEEccCC-----------------C-EEEEEeC
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG-PIQALSFSENG-----------------Y-YLATAAD   70 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~i~~~~~~-----------------~-~l~s~~~   70 (162)
                      .+.++..+|.+.+.|+...=|.|.|+|+.++..++.+++-++ .+.-+....++                 . +++-+-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            367899999999999988889999999999998888887543 22222111111                 1 2444556


Q ss_pred             CCeEEEEEcccCcceeEEe
Q psy12456         71 ENCVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        71 d~~v~~wd~~~~~~~~~~~   89 (162)
                      -|.|.+|.++....+..+.
T Consensus       389 Rg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             CCeEEEEecCCCCEEEEEE
Confidence            7788899887766555444

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.52  E-value=0.17  Score=35.88  Aligned_cols=115  Identities=13%  Similarity=0.211  Sum_probs=66.0

Q ss_pred             ccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC
Q psy12456         46 FQLDAGPIQALSFSENGY-YLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ  122 (162)
Q Consensus        46 ~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~  122 (162)
                      +.+-...+++++|+|+.. ++++.+..+.|..++.. .+.+.++..........+++..++.++++...+  +.++....
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~   95 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD   95 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence            333345699999999754 66666777888777764 455666666555567889999888888776434  33333311


Q ss_pred             c------eEEEEe-----ecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        123 W------QELAMF-----NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       123 ~------~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .      .....+     ..++..+-+++|.|.++.|..+-.....++|.
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~  145 (248)
T PF06977_consen   96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE  145 (248)
T ss_dssp             --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred             cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence            1      111222     13556699999999877666666666666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PHA02713 hypothetical protein; Provisional

Probab=96.50  E-value=0.11  Score=41.14  Aligned_cols=136  Identities=8%  Similarity=0.178  Sum_probs=70.2

Q ss_pred             CCcEEEEeeCCC-----cEEEEECCCCeeee--eccCCCCCEEEEEEccCCCEEEEEeCCC-------------------
Q psy12456         19 DGLIFGIGTSDS-----QVQIWDLKKQKNVT--DFQLDAGPIQALSFSENGYYLATAADEN-------------------   72 (162)
Q Consensus        19 ~g~~~a~g~~dg-----~i~~wd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d~-------------------   72 (162)
                      +|++++.|+.++     .+..||.++++...  .+.........++.  ++...+.|+.++                   
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence            688899999865     37889988775432  22222222222233  577777777542                   


Q ss_pred             ----eEEEEEcccC--cceeEEeeCCCCCeeEEEECCCCCEEEEeccc--------EEEEEeC---CceEEEEeecCccc
Q psy12456         73 ----CVKLWDLRKL--KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--------VRVFLCK---QWQELAMFNEHTAM  135 (162)
Q Consensus        73 ----~v~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~i~~~~---~~~~~~~~~~h~~~  135 (162)
                          .+..||..+.  +.+..+.. .... .+++ .-+++..+.|+.+        +..|+..   .|..+..+......
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~-~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~  505 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWT-GTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA  505 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCc-cccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence                4666776542  22222211 1111 1122 2345555556532        2344432   46666555443333


Q ss_pred             EEEEEECCCCceEEEeecCC--eEEEee
Q psy12456        136 VTGVRFGTHAHYLASSSMDR--TLKLYS  161 (162)
Q Consensus       136 v~~~~~s~~~~~l~s~s~D~--~i~iw~  161 (162)
                      ...+.+  +++..+.|+.|+  ++-.||
T Consensus       506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd  531 (557)
T PHA02713        506 LHTILH--DNTIMMLHCYESYMLQDTFN  531 (557)
T ss_pred             ceeEEE--CCEEEEEeeecceeehhhcC
Confidence            333433  678888999887  444443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.49  E-value=0.21  Score=36.61  Aligned_cols=144  Identities=18%  Similarity=0.106  Sum_probs=81.8

Q ss_pred             CcEEEEEeCCCCcEEEEeeC-----------CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC-CeEEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTS-----------DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE-NCVKL   76 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~-----------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-~~v~~   76 (162)
                      -.-+.+.+.|+|.+.+....           -|.+..+|. .+..++.+..+-..-++|+||||++.|..+... +.+.-
T Consensus       111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r  189 (307)
T COG3386         111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR  189 (307)
T ss_pred             CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence            34467888999987765444           132334443 344554444444445689999999877777654 67777


Q ss_pred             EEccc--C---cceeEEee-CCCCCeeEEEECCCCCEEEEecc---cEEEEEeCCceEEEEeecCcccEEEEEEC-CCCc
Q psy12456         77 WDLRK--L---KNFKTLQL-DPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQELAMFNEHTAMVTGVRFG-THAH  146 (162)
Q Consensus        77 wd~~~--~---~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~  146 (162)
                      |++..  .   ........ ........++...+|.+-+++-.   .+.++..+ ++.+..+.-....++++.|- |+.+
T Consensus       190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~  268 (307)
T COG3386         190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLN  268 (307)
T ss_pred             EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcC
Confidence            76642  1   11101111 11223455677777777644333   35555444 66677776666778888884 5544


Q ss_pred             -eEEEeecC
Q psy12456        147 -YLASSSMD  154 (162)
Q Consensus       147 -~l~s~s~D  154 (162)
                       +++++...
T Consensus       269 ~L~iTs~~~  277 (307)
T COG3386         269 TLYITSARS  277 (307)
T ss_pred             EEEEEecCC
Confidence             44555443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.49  E-value=0.18  Score=35.90  Aligned_cols=130  Identities=15%  Similarity=0.186  Sum_probs=74.1

Q ss_pred             CCCcEEEEeeCCCcEEEEECC-CCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE--------
Q psy12456         18 PDGLIFGIGTSDSQVQIWDLK-KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL--------   88 (162)
Q Consensus        18 ~~g~~~a~g~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~--------   88 (162)
                      ..++.++.|+.+| +.+++.+ ..+.....+  ..+|..+..-|+-+.++.-+ |+.+.++++.........        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3567888999999 8999983 233333222  33499999988777666655 499999998755433311        


Q ss_pred             -----eeCCCCCeeEEE---ECCCCCEEEEecc-cEEEEEeCC----c-eEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         89 -----QLDPNYEIRDLC---FDQSGTYMAVAGT-DVRVFLCKQ----W-QELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        89 -----~~~~~~~v~~~~---~~~~~~~~~~~~~-~~~i~~~~~----~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                           .......+..++   -......++++-. .+.++.+..    + ...+++.-. ..+..+.|.  ++.++-|..+
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v~~~~  157 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICVGTSK  157 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEEEeCC
Confidence                 111112233333   1123345555544 366776643    2 344554433 567788887  4445444433

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG2377|consensus

Probab=96.48  E-value=0.11  Score=39.78  Aligned_cols=137  Identities=13%  Similarity=0.121  Sum_probs=84.0

Q ss_pred             EEEEeCCCCcEEEEeeCCCcEEEEECCCC--eeeeecc-CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456         12 TTAQLHPDGLIFGIGTSDSQVQIWDLKKQ--KNVTDFQ-LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg~i~~wd~~~~--~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      +.+-|...++++.+..+ |.+.=|.++..  ...-++. ...++|.+|.|++|.+.++.--.|++|.+.+....+.....
T Consensus        26 ngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~  104 (657)
T KOG2377|consen   26 NGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY  104 (657)
T ss_pred             cceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence            44445544444433332 44555655432  2222232 35679999999999999999999999999887332221111


Q ss_pred             e--eC-CCCCeeEEEECCCCCEEEEecccEEEEEeCCc-eEEEEeecCcccEEEEEECCCCceEE
Q psy12456         89 Q--LD-PNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW-QELAMFNEHTAMVTGVRFGTHAHYLA  149 (162)
Q Consensus        89 ~--~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~  149 (162)
                      .  .. ....|...+|+.+...-......+.+|-+..- ..++..+.|+..|.-..|.|+.+.+.
T Consensus       105 ~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  105 TQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             HHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence            1  11 12348889998875555555555777765432 33455677888888888888877543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.46  E-value=0.017  Score=43.00  Aligned_cols=100  Identities=17%  Similarity=0.182  Sum_probs=53.8

Q ss_pred             ccCCCEEEEEe---------CCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEE-
Q psy12456         59 SENGYYLATAA---------DENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELA-  127 (162)
Q Consensus        59 ~~~~~~l~s~~---------~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~-  127 (162)
                      |||+++++...         ..+.+.+||+.+.+.......  ...+....|+|+|.+++-.... +-+......+..+ 
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEecCceEEEECCCCCeEEe
Confidence            46666666642         235688899987543322211  2357888999999999887543 3333322332221 


Q ss_pred             Eeec-------C---------cccEEEEEECCCCceEEEeecC-CeEEEe
Q psy12456        128 MFNE-------H---------TAMVTGVRFGTHAHYLASSSMD-RTLKLY  160 (162)
Q Consensus       128 ~~~~-------h---------~~~v~~~~~s~~~~~l~s~s~D-~~i~iw  160 (162)
                      +..+       -         -+.-.++.||||+++||....| +.|+.+
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~  128 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY  128 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence            1111       0         0112568899999999877554 344443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.38  E-value=0.29  Score=36.99  Aligned_cols=134  Identities=10%  Similarity=0.027  Sum_probs=72.0

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEE
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDL   99 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~   99 (162)
                      +..+..++.+|.+.-+|.++++.+.+.+..  ....+..  .+..+..++.++.+..+|..+.+.+=.............
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp  331 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP  331 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence            334556677899999999999877554321  1111222  456777788899999999876543211110000011111


Q ss_pred             EECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEE-EEECCCCceEEEeecCCeEEEee
Q psy12456        100 CFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTG-VRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       100 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..  .+.++..++.+  +.+.+..+++.+-+.+-....+.+ ..+  .+..+..++.||.+..++
T Consensus       332 ~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        332 VL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence            11  13445556555  344455566655554433222221 112  234566678999988765

>KOG2444|consensus

Probab=96.33  E-value=0.031  Score=38.60  Aligned_cols=101  Identities=13%  Similarity=0.171  Sum_probs=59.2

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeee-ccCCCCCEEE-EEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCee
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTD-FQLDAGPIQA-LSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIR   97 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~-i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~   97 (162)
                      +.-+++|+.+|.|.+|+...-..... +..-..+|-. |.--.++.+..++..|+.|+.|++...+.+.....+...++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            34577899999999998863211111 1111222322 222235668999999999999999766655443333324455


Q ss_pred             EEEECCCCCEEEEe--ccc--EEEEEe
Q psy12456         98 DLCFDQSGTYMAVA--GTD--VRVFLC  120 (162)
Q Consensus        98 ~~~~~~~~~~~~~~--~~~--~~i~~~  120 (162)
                      .+..+..+++++.+  |.+  ++.|+.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcch
Confidence            55555666666665  443  444543

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=96.30  E-value=0.51  Score=39.05  Aligned_cols=114  Identities=16%  Similarity=0.212  Sum_probs=73.5

Q ss_pred             CcccCCCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC----e-eeeecc---C-------CCCCEEEEEEccCCCE
Q psy12456          1 ISASGAGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ----K-NVTDFQ---L-------DAGPIQALSFSENGYY   64 (162)
Q Consensus         1 ~~~~~~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~----~-~~~~~~---~-------~~~~v~~i~~~~~~~~   64 (162)
                      |.....++.+...++|+| +...||+....|...|||+...    + ......   +       +......|.|.++-+.
T Consensus       138 i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~  217 (765)
T PF10214_consen  138 ISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNR  217 (765)
T ss_pred             echhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCE
Confidence            345567899999999998 6679999999999999999211    1 111110   1       1123447889888888


Q ss_pred             EEEEeCCCeEEEEEcccCccee-EEeeCCCCCeeEEEECCC--CCEEEEecccE
Q psy12456         65 LATAADENCVKLWDLRKLKNFK-TLQLDPNYEIRDLCFDQS--GTYMAVAGTDV  115 (162)
Q Consensus        65 l~s~~~d~~v~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~  115 (162)
                      |+.++... +.++|+.+..... .........|.++.-+|.  ...++..+..+
T Consensus       218 lLv~~r~~-l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~ei  270 (765)
T PF10214_consen  218 LLVCNRSK-LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEI  270 (765)
T ss_pred             EEEEcCCc-eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeE
Confidence            88888754 7889987655422 222223345888888776  44444444443

These proteins are found in fungi.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.18  E-value=0.36  Score=36.20  Aligned_cols=142  Identities=11%  Similarity=0.083  Sum_probs=74.7

Q ss_pred             CcEEEEEeCCCCcEEEEee-----------CCC-cEEEEECCC--Ce--eeeeccCCCCCEEEEEEccCCCEEEEEeCCC
Q psy12456          9 PTLTTAQLHPDGLIFGIGT-----------SDS-QVQIWDLKK--QK--NVTDFQLDAGPIQALSFSENGYYLATAADEN   72 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~-----------~dg-~i~~wd~~~--~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~   72 (162)
                      .....+++.++|+++++-.           ..+ .|.+++-..  ++  ....|.........+++.+++ .++ +..+.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence            4456789999999887642           223 677776432  22  223343333345788999888 444 44444


Q ss_pred             eEEEEEccc----C-c--ce-eEEeeC---CCCCeeEEEECCCCCEEEEeccc-------------------EEEEEeCC
Q psy12456         73 CVKLWDLRK----L-K--NF-KTLQLD---PNYEIRDLCFDQSGTYMAVAGTD-------------------VRVFLCKQ  122 (162)
Q Consensus        73 ~v~~wd~~~----~-~--~~-~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~-------------------~~i~~~~~  122 (162)
                      ..++.|...    . +  .+ ..+...   +......+.|.|+|.+.++-+..                   ..++.++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            333434321    0 1  11 112111   12236788999998765543311                   12333322


Q ss_pred             -ceEEEEeecCcccEEEEEECCCCceEEEee
Q psy12456        123 -WQELAMFNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus       123 -~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                       ...+..+...-.....++|+|+++++++-.
T Consensus       172 dg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       172 DGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence             112223333334467899999998887644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1916|consensus

Probab=96.08  E-value=0.012  Score=48.15  Aligned_cols=69  Identities=12%  Similarity=0.286  Sum_probs=48.7

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEE-----------EEccCCCEEEEEeCCCeEEEEEc
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL-----------SFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i-----------~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      |.-+-+-++..++..+..++++++.+.++... ..|..|...+..+           ..+|||+.++.+..||.+++|.+
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            33344555778899999999999877654322 3344565443332           36899999999999999999987


Q ss_pred             c
Q psy12456         80 R   80 (162)
Q Consensus        80 ~   80 (162)
                      .
T Consensus       265 y  265 (1283)
T KOG1916|consen  265 Y  265 (1283)
T ss_pred             e
Confidence            3

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.06  E-value=0.21  Score=36.01  Aligned_cols=56  Identities=18%  Similarity=0.343  Sum_probs=42.6

Q ss_pred             EeCCCCcEEEEeeCC-----CcEEEEECCCC-eeeeeccCCCCCEEEEEEccCCCEEEEEeC
Q psy12456         15 QLHPDGLIFGIGTSD-----SQVQIWDLKKQ-KNVTDFQLDAGPIQALSFSENGYYLATAAD   70 (162)
Q Consensus        15 ~~~~~g~~~a~g~~d-----g~i~~wd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~   70 (162)
                      .|||||.+|...-.|     |.|-|||.+.+ +.+-+|..|.-.-..+.+.+||..++.++.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            589999998776544     56899999854 456667777544467889999999988875

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.98  E-value=0.07  Score=26.81  Aligned_cols=31  Identities=29%  Similarity=0.365  Sum_probs=25.2

Q ss_pred             CCEEEEEEccCC---CEEEEEeCCCeEEEEEccc
Q psy12456         51 GPIQALSFSENG---YYLATAADENCVKLWDLRK   81 (162)
Q Consensus        51 ~~v~~i~~~~~~---~~l~s~~~d~~v~~wd~~~   81 (162)
                      +.|+++.|+|+.   .+|+.+-..+.+.++|+|+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4788777778999999983

It contains a characteristic DLL sequence motif.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.84  E-value=0.55  Score=35.45  Aligned_cols=134  Identities=16%  Similarity=0.192  Sum_probs=84.3

Q ss_pred             EEEEEeCCCCc-EEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC---CCeEEEEEcccCccee
Q psy12456         11 LTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD---ENCVKLWDLRKLKNFK   86 (162)
Q Consensus        11 v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---d~~v~~wd~~~~~~~~   86 (162)
                      -+.+++++++. .++....++.|.+.|....+.......-. .-..++++|+++.+..+..   ++++.+.|-.+.+...
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            34567888777 66666667999999987777666654333 3457899999877766665   6788888877666555


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEE-E----eecCcccEEEEEECCCCceE
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELA-M----FNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~-~----~~~h~~~v~~~~~s~~~~~l  148 (162)
                      .... ...+ ..+.+.|+|..+.....+   +.+++.......+ .    ..-. ..-..+.++|++.++
T Consensus       155 ~~~v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~  221 (381)
T COG3391         155 TIPV-GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRV  221 (381)
T ss_pred             EEec-CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEE
Confidence            5322 2223 778999999977776632   4444432222221 0    1111 123457788888744

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.74  E-value=0.5  Score=34.19  Aligned_cols=112  Identities=11%  Similarity=0.175  Sum_probs=72.0

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEE--eCCce---
Q psy12456         50 AGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL--CKQWQ---  124 (162)
Q Consensus        50 ~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~--~~~~~---  124 (162)
                      ...++++.|+|+.+.|++..+...-.++=-...+.+.++..........+.+..++.++++--.+..++.  .....   
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~  164 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI  164 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence            3459999999998888887766655555434455566665544444566788888888877665543332  22110   


Q ss_pred             -----E--EEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        125 -----E--LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       125 -----~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                           .  +......+..-.+++|.|..+.|..+-.-..+.||.
T Consensus       165 ~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~  208 (316)
T COG3204         165 SAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFE  208 (316)
T ss_pred             eccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEE
Confidence                 1  111222256678899999888887777777777764

>KOG2395|consensus

Probab=95.72  E-value=0.05  Score=42.14  Aligned_cols=67  Identities=12%  Similarity=0.256  Sum_probs=49.2

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      .-+|.+-..+| ++|+|+.+|.||+||- .+. ...-|++-..+|..|..+.+|.+++... +.++.+-+.
T Consensus       432 nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  432 NFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            34667777777 6889999999999995 433 3344677778999999999999887544 455555554

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.62  E-value=0.2  Score=34.76  Aligned_cols=65  Identities=23%  Similarity=0.235  Sum_probs=47.2

Q ss_pred             EeCCCCcEEEEeeCCCcEEEEECCCCeeeeec-------c-------CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456         15 QLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF-------Q-------LDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus        15 ~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~-------~-------~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      .+..+++++.+-+.+|.+.+||+.+++.+..-       .       .....|..+.++.+|.-+++-++ +....|+..
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~   95 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD   95 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence            35567888999999999999999988754322       1       23456888888888887776554 567777753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.61  E-value=0.22  Score=39.37  Aligned_cols=71  Identities=11%  Similarity=0.207  Sum_probs=44.6

Q ss_pred             CCCcEEEEeeCCCcEEEEECCC----Ceeeee-----------cc-----------CCCCCEEEEEEcc----CCCEEEE
Q psy12456         18 PDGLIFGIGTSDSQVQIWDLKK----QKNVTD-----------FQ-----------LDAGPIQALSFSE----NGYYLAT   67 (162)
Q Consensus        18 ~~g~~~a~g~~dg~i~~wd~~~----~~~~~~-----------~~-----------~~~~~v~~i~~~~----~~~~l~s   67 (162)
                      ++...++++..||.+.......    +.....           +.           .......+++++.    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            5677788889999988887664    111110           00           0123455666666    7789999


Q ss_pred             EeCCCeEEEEEcccCcceeEE
Q psy12456         68 AADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        68 ~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      -+.|+++|+||+.+.+.+...
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            999999999999988875544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.51  E-value=0.12  Score=39.24  Aligned_cols=109  Identities=17%  Similarity=0.252  Sum_probs=54.8

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECC---CCCEEEEecccEEEEEeCCceEEEE
Q psy12456         52 PIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQ---SGTYMAVAGTDVRVFLCKQWQELAM  128 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~  128 (162)
                      .|..|+|+++...|+.+...|.|-+|...+.+.................+..   .+.++-.. ....--.-..+.+...
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~-~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDIS-DRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-G-GG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEeh-hhCCcccccccCchhh
Confidence            4789999999999999999999999987653322200000000011011111   11221111 1000000001334555


Q ss_pred             eecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        129 FNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       129 ~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++...++|++++.| +-.++|.|..+|.+.+.|+
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~  114 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDL  114 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEET
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEEC
Confidence            66668999999998 5669999999999999885

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.11  E-value=1.3  Score=35.17  Aligned_cols=110  Identities=11%  Similarity=0.189  Sum_probs=64.0

Q ss_pred             CCEEEEEEccC----CCEEEEEeCCCeEEEEEcccC-----cceeEE--eeCCCCC--eeEEEECCCCCEEEEe-cccEE
Q psy12456         51 GPIQALSFSEN----GYYLATAADENCVKLWDLRKL-----KNFKTL--QLDPNYE--IRDLCFDQSGTYMAVA-GTDVR  116 (162)
Q Consensus        51 ~~v~~i~~~~~----~~~l~s~~~d~~v~~wd~~~~-----~~~~~~--~~~~~~~--v~~~~~~~~~~~~~~~-~~~~~  116 (162)
                      .-|.+++|.|-    ...|+..--.+.|.+|.+...     +.+...  ......+  ...+.|+|....+++- ..|..
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            35889999984    435555666788999998521     111111  1111222  3567899998877764 34554


Q ss_pred             EEE-eCC-ceEEE-EeecCcccEEEEEECCCCceEEEe-ecCCeEEEee
Q psy12456        117 VFL-CKQ-WQELA-MFNEHTAMVTGVRFGTHAHYLASS-SMDRTLKLYS  161 (162)
Q Consensus       117 i~~-~~~-~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~-s~D~~i~iw~  161 (162)
                      |+. ... ...++ .+ .-.+.|.+..|.+||+.|+.+ +..=.-.+||
T Consensus       137 V~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd  184 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD  184 (671)
T ss_pred             EeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence            432 111 12222 23 345679999999999877544 3333456776

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.10  E-value=0.91  Score=33.29  Aligned_cols=90  Identities=16%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             EEEEEeCCCCcEEEEeeC-CCcEEEEECCC--C----e-eeeeccCCCCCEEEEEEccCCCEEEEEeCCC-eEEEEEccc
Q psy12456         11 LTTAQLHPDGLIFGIGTS-DSQVQIWDLKK--Q----K-NVTDFQLDAGPIQALSFSENGYYLATAADEN-CVKLWDLRK   81 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~--~----~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~-~v~~wd~~~   81 (162)
                      -+.++||||++.|..... .+.|.-|++..  +    + ....+..+.+.--.++...+|++-+++-.++ .|..|+.. 
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-  243 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-  243 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence            378999999977766655 47777777752  1    1 1122223334445677778888775555444 78889877 


Q ss_pred             CcceeEEeeCCCCCeeEEEEC
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFD  102 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~  102 (162)
                      .+.+....... ..+.+++|-
T Consensus       244 G~l~~~i~lP~-~~~t~~~Fg  263 (307)
T COG3386         244 GKLLGEIKLPV-KRPTNPAFG  263 (307)
T ss_pred             CcEEEEEECCC-CCCccceEe
Confidence            56666666542 346777775

>KOG1897|consensus

Probab=95.10  E-value=0.98  Score=37.89  Aligned_cols=124  Identities=11%  Similarity=0.249  Sum_probs=75.9

Q ss_pred             EEEEECCCCeeeeeccCCC----CCEEEEEEccC-CCEEEEEeC----------CCeEEEEEcccCcce---eEEeeCCC
Q psy12456         32 VQIWDLKKQKNVTDFQLDA----GPIQALSFSEN-GYYLATAAD----------ENCVKLWDLRKLKNF---KTLQLDPN   93 (162)
Q Consensus        32 i~~wd~~~~~~~~~~~~~~----~~v~~i~~~~~-~~~l~s~~~----------d~~v~~wd~~~~~~~---~~~~~~~~   93 (162)
                      ++++|-++-+.++..+...    -.|.++.|..| +.+++.|..          .|.|.++.....+.+   .+...  +
T Consensus       752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v--~  829 (1096)
T KOG1897|consen  752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV--K  829 (1096)
T ss_pred             EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee--c
Confidence            6677766555444333221    23555668776 677777743          466777776542222   22211  1


Q ss_pred             CCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEE
Q psy12456         94 YEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      ..+.+++ --+|+++|.=+..+++|.|...++++.-..|..++..+...-.+..++.|..=+.+.
T Consensus       830 Gav~aL~-~fngkllA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sit  893 (1096)
T KOG1897|consen  830 GAVYALV-EFNGKLLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSIT  893 (1096)
T ss_pred             cceeehh-hhCCeEEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEE
Confidence            1222222 136888888888899999987767776677888888888877777777775545444

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.96  E-value=1.2  Score=34.00  Aligned_cols=61  Identities=15%  Similarity=0.223  Sum_probs=41.8

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEE
Q psy12456         50 AGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAV  110 (162)
Q Consensus        50 ~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  110 (162)
                      .+++..|++||++++++.-..+|.+.+....-.+....+..........+.|..+...++.
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~  276 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLS  276 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEE
Confidence            3689999999999999999999998887754333334444433344567777766544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.78  E-value=0.25  Score=36.51  Aligned_cols=57  Identities=25%  Similarity=0.458  Sum_probs=41.8

Q ss_pred             EEEEECCCCeeeeeccCCCCCEEEEEEccCCC-EEEEE-eCCCeEEEEEcccCcceeEEe
Q psy12456         32 VQIWDLKKQKNVTDFQLDAGPIQALSFSENGY-YLATA-ADENCVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        32 i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~-~~d~~v~~wd~~~~~~~~~~~   89 (162)
                      |=++|+.+++.+..+... .++.+|+.+.+.+ +|... ..++.+.+||..+.+.+.++.
T Consensus       271 VWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            667788899999998853 4677899998655 55444 457899999999888776654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.72  E-value=1.5  Score=33.76  Aligned_cols=148  Identities=14%  Similarity=0.212  Sum_probs=69.1

Q ss_pred             EeCCCCcEEEEeeCC------CcEEEEECCCCeeeeeccCCC---CCEEEEEEccCCCEEEEEeC---------------
Q psy12456         15 QLHPDGLIFGIGTSD------SQVQIWDLKKQKNVTDFQLDA---GPIQALSFSENGYYLATAAD---------------   70 (162)
Q Consensus        15 ~~~~~g~~~a~g~~d------g~i~~wd~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l~s~~~---------------   70 (162)
                      -.-|+|.+++++-.|      |-+.++|-++-+....++...   ..-...-|.|..+.++|...               
T Consensus       136 Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~  215 (461)
T PF05694_consen  136 HCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL  215 (461)
T ss_dssp             EE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred             eecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence            344678777654332      347788877666666665432   22345667777777777654               


Q ss_pred             -----CCeEEEEEcccCcceeEEeeCCCC-CeeEEEEC--CCCCEEEEe-cccEEEEEeC-----CceE--EEEeec---
Q psy12456         71 -----ENCVKLWDLRKLKNFKTLQLDPNY-EIRDLCFD--QSGTYMAVA-GTDVRVFLCK-----QWQE--LAMFNE---  131 (162)
Q Consensus        71 -----d~~v~~wd~~~~~~~~~~~~~~~~-~v~~~~~~--~~~~~~~~~-~~~~~i~~~~-----~~~~--~~~~~~---  131 (162)
                           -.++.+||+.+.+..+.+.+.... ....+.|.  |+..+=.++ .-.-.||.+.     .|+.  +..+..   
T Consensus       216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v  295 (461)
T PF05694_consen  216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV  295 (461)
T ss_dssp             HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred             hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence                 348999999998888888765432 23344553  444332222 1223333321     1322  111111   


Q ss_pred             --C------------cccEEEEEECCCCceE-EEeecCCeEEEeeC
Q psy12456        132 --H------------TAMVTGVRFGTHAHYL-ASSSMDRTLKLYSL  162 (162)
Q Consensus       132 --h------------~~~v~~~~~s~~~~~l-~s~s~D~~i~iw~~  162 (162)
                        -            ..-|+.+..|.|.++| +++=.+|.|+-||+
T Consensus       296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDI  341 (461)
T PF05694_consen  296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDI  341 (461)
T ss_dssp             -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-
T ss_pred             CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEec
Confidence              1            2347999999999988 55556999999986

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG3630|consensus

Probab=94.72  E-value=0.087  Score=44.39  Aligned_cols=98  Identities=14%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             EEEEeCCCCc-EEEEeeCCCcEEEEECCCCee-eeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC--cceeE
Q psy12456         12 TTAQLHPDGL-IFGIGTSDSQVQIWDLKKQKN-VTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL--KNFKT   87 (162)
Q Consensus        12 ~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~--~~~~~   87 (162)
                      -++.|+|.=. ..|+...|+.|++.-+..... +.+++. ....++++|+|.|..++.|...|++.-|...-.  ..+..
T Consensus       159 ~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~-t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~  237 (1405)
T KOG3630|consen  159 LKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPV-TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPE  237 (1405)
T ss_pred             ccccccCCccchhhhhccccchhhhhhhhhhhhhcccCc-ccceeeEEeccccceeeEecCCCeEEEeecccceeecccC
Confidence            3456666332 346667788888887654332 233332 346789999999999999999999998875321  11111


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEE
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAV  110 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~  110 (162)
                      ......+.|.+++|-....++++
T Consensus       238 Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  238 PPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             CCcCCCcceeEEEEecceeEEEE
Confidence            11222467999999888777766

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.67  E-value=2.1  Score=35.27  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456         52 PIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      .|..|.++|+|.+++..+..+ |.+-.+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~L  112 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLEL  112 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence            477889999999999888866 444333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.64  E-value=0.22  Score=25.03  Aligned_cols=30  Identities=13%  Similarity=0.323  Sum_probs=25.4

Q ss_pred             cEEEEEeCCCC---cEEEEeeCCCcEEEEECCC
Q psy12456         10 TLTTAQLHPDG---LIFGIGTSDSQVQIWDLKK   39 (162)
Q Consensus        10 ~v~~~~~~~~g---~~~a~g~~dg~i~~wd~~~   39 (162)
                      .|-+++|+|+.   .+|+-.-.-|.+-|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57889999844   4888888889999999985

It contains a characteristic DLL sequence motif.

>KOG4499|consensus

Probab=94.56  E-value=0.33  Score=34.08  Aligned_cols=55  Identities=18%  Similarity=0.235  Sum_probs=44.7

Q ss_pred             eCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccC--CCEEEEEeC
Q psy12456         16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSEN--GYYLATAAD   70 (162)
Q Consensus        16 ~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~   70 (162)
                      +..+|+++++....|+|...|+.+|+.+.+++.....|++++|--.  ..+.+++..
T Consensus       219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa  275 (310)
T KOG4499|consen  219 IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA  275 (310)
T ss_pred             EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence            3558999999999999999999999999999988889999999642  234444443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=94.50  E-value=0.64  Score=28.61  Aligned_cols=100  Identities=16%  Similarity=0.168  Sum_probs=55.8

Q ss_pred             EEEEEEcc---C-CCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEE
Q psy12456         53 IQALSFSE---N-GYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAM  128 (162)
Q Consensus        53 v~~i~~~~---~-~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  128 (162)
                      |+++++..   | .+.|+.|+.|..|++|+-.  +.+..+.  ....+..++-...+ .++.+..+..|=.++..+.+=.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~~~~~~-~F~Y~l~NGTVGvY~~~~RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLCSLGGG-RFAYALANGTVGVYDRSQRLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEEEcCCC-EEEEEecCCEEEEEeCcceeee
Confidence            56777664   2 3689999999999999854  3333333  33457777766664 4666665533333332222212


Q ss_pred             eecCcccEEEEEEC-CCC---ceEEEeecCCeEE
Q psy12456        129 FNEHTAMVTGVRFG-THA---HYLASSSMDRTLK  158 (162)
Q Consensus       129 ~~~h~~~v~~~~~s-~~~---~~l~s~s~D~~i~  158 (162)
                      .+.... +.++.+. .++   .-|++|=.+|.|-
T Consensus        77 iKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            222222 5555543 332   2567777777663

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.31  E-value=1.7  Score=32.82  Aligned_cols=69  Identities=10%  Similarity=0.005  Sum_probs=45.0

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCCC-CCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEee
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      +..+..++.+|.+..+|.++++.+-....-. ....+..+  .+.++..++.||.+.+.|..+.+.+-+.+.
T Consensus       294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        294 GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            4456667788999999998887765433211 11111122  255788889999999999988776555443

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.24  E-value=0.81  Score=30.45  Aligned_cols=29  Identities=17%  Similarity=0.312  Sum_probs=22.7

Q ss_pred             CEEEEEEccCC------CEEEEEeCCCeEEEEEcc
Q psy12456         52 PIQALSFSENG------YYLATAADENCVKLWDLR   80 (162)
Q Consensus        52 ~v~~i~~~~~~------~~l~s~~~d~~v~~wd~~   80 (162)
                      .+.+++|||.|      -+|++-..++.|.+|.-.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            67889999843      367888888999998754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460|consensus

Probab=94.21  E-value=1.2  Score=35.00  Aligned_cols=68  Identities=19%  Similarity=0.398  Sum_probs=43.0

Q ss_pred             CeeEEEECCCCCEEEEeccc-EEEEEe-CCceEEEEeec--------------------CcccEEEEEECCCC---ceEE
Q psy12456         95 EIRDLCFDQSGTYMAVAGTD-VRVFLC-KQWQELAMFNE--------------------HTAMVTGVRFGTHA---HYLA  149 (162)
Q Consensus        95 ~v~~~~~~~~~~~~~~~~~~-~~i~~~-~~~~~~~~~~~--------------------h~~~v~~~~~s~~~---~~l~  149 (162)
                      .|..+..++.|..++..+.+ +.|..+ ++|..-..++.                    ..-.+..++|.|++   ..+.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            46678889999988888776 444332 22221111111                    12236678899876   4666


Q ss_pred             EeecCCeEEEeeC
Q psy12456        150 SSSMDRTLKLYSL  162 (162)
Q Consensus       150 s~s~D~~i~iw~~  162 (162)
                      .-+.|..||+||+
T Consensus       185 iL~sdnviRiy~l  197 (741)
T KOG4460|consen  185 LLTSDNVIRIYSL  197 (741)
T ss_pred             EEecCcEEEEEec
Confidence            6778999999985

>KOG4499|consensus

Probab=94.09  E-value=1.4  Score=31.06  Aligned_cols=91  Identities=16%  Similarity=0.223  Sum_probs=61.0

Q ss_pred             EEEEeCCCCcEE-EEeeCCCcEEEEECC--CC-----eeeeeccCC----CCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456         12 TTAQLHPDGLIF-GIGTSDSQVQIWDLK--KQ-----KNVTDFQLD----AGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus        12 ~~~~~~~~g~~~-a~g~~dg~i~~wd~~--~~-----~~~~~~~~~----~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      +.++|..+-+.| ..-+.+-+|.-||.+  +|     +.+..++-.    ...--.+++..+|++.++.-.-++|.-.|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            567788766655 445556777778843  33     333333320    011124566778888888888889999999


Q ss_pred             ccCcceeEEeeCCCCCeeEEEECC
Q psy12456         80 RKLKNFKTLQLDPNYEIRDLCFDQ  103 (162)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~~~~~~~  103 (162)
                      .+.+.+.++.+. ...++++||-.
T Consensus       241 ~tGK~L~eiklP-t~qitsccFgG  263 (310)
T KOG4499|consen  241 TTGKILLEIKLP-TPQITSCCFGG  263 (310)
T ss_pred             CCCcEEEEEEcC-CCceEEEEecC
Confidence            999988888774 44699999964

>KOG4441|consensus

Probab=93.96  E-value=1.6  Score=34.96  Aligned_cols=134  Identities=14%  Similarity=0.171  Sum_probs=70.1

Q ss_pred             CCCCcEEEEeeCCC------cEEEEECCCCeeeeeccCC-CCCEEEEEEccCCCEEEEEeCC------CeEEEEEcccCc
Q psy12456         17 HPDGLIFGIGTSDS------QVQIWDLKKQKNVTDFQLD-AGPIQALSFSENGYYLATAADE------NCVKLWDLRKLK   83 (162)
Q Consensus        17 ~~~g~~~a~g~~dg------~i~~wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~d------~~v~~wd~~~~~   83 (162)
                      +..+.++++|+.++      .+..||..+++........ ...-.+++.- ++...++|+.|      .++..||.++.+
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            34577889999884      5788998887544333222 1222233333 45778888888      256678776432


Q ss_pred             --ceeEEeeCCCCCeeEEEECCCCCEEEEeccc-------EEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEee
Q psy12456         84 --NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-------VRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        84 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                        .+..+.. .+.. ..++ .-+|..-++|+.+       +..|+.  +.|..+..+.........+.+  ++...+.||
T Consensus       361 W~~~a~M~~-~R~~-~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG  435 (571)
T KOG4441|consen  361 WTPVAPMNT-KRSD-FGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGG  435 (571)
T ss_pred             eeccCCccC-cccc-ceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcC
Confidence              2222211 1111 1111 2357777888876       233332  235444433222222222333  577778888


Q ss_pred             cCCe
Q psy12456        153 MDRT  156 (162)
Q Consensus       153 ~D~~  156 (162)
                      .|+.
T Consensus       436 ~~~~  439 (571)
T KOG4441|consen  436 GDGS  439 (571)
T ss_pred             cCCC
Confidence            7654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.84  E-value=2  Score=35.38  Aligned_cols=77  Identities=13%  Similarity=0.205  Sum_probs=53.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC----------Cee--e-eecc--------CCCCCEEEEEEccC---
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK----------QKN--V-TDFQ--------LDAGPIQALSFSEN---   61 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~----------~~~--~-~~~~--------~~~~~v~~i~~~~~---   61 (162)
                      .-...|..+.++|+|.++|..+..|. .|-.+..          ++.  . +++.        .+...|..+.|+|.   
T Consensus        82 ~~~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   82 PPLFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             CCceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            44567899999999999999988664 4444421          111  1 1221        12346889999995   


Q ss_pred             CCEEEEEeCCCeEEEEEcccCc
Q psy12456         62 GYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus        62 ~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      +..|+.=..|+++++||+.+.+
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCC
Confidence            5788888889999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.74  E-value=0.99  Score=30.05  Aligned_cols=28  Identities=21%  Similarity=0.325  Sum_probs=23.1

Q ss_pred             ccEEEEEECCCC------ceEEEeecCCeEEEee
Q psy12456        134 AMVTGVRFGTHA------HYLASSSMDRTLKLYS  161 (162)
Q Consensus       134 ~~v~~~~~s~~~------~~l~s~s~D~~i~iw~  161 (162)
                      ..+..++|||.|      ..||.-+.++.+.+|.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~  119 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG  119 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence            378999999954      4788889999999985

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1916|consensus

Probab=93.71  E-value=0.034  Score=45.70  Aligned_cols=85  Identities=13%  Similarity=0.218  Sum_probs=45.4

Q ss_pred             CcEEEEECCC--CeeeeeccCC-----CCCEEEEEEcc---CCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCC----
Q psy12456         30 SQVQIWDLKK--QKNVTDFQLD-----AGPIQALSFSE---NGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYE----   95 (162)
Q Consensus        30 g~i~~wd~~~--~~~~~~~~~~-----~~~v~~i~~~~---~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~----   95 (162)
                      |.+.|||++.  |+....+..|     ..++.-|.|+|   +.-++..+..++++++..+..... ..+..|....    
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            6788998863  4433333221     23345556655   667888888888888866542111 1111111110    


Q ss_pred             ------eeEEEECCCCCEEEEecccE
Q psy12456         96 ------IRDLCFDQSGTYMAVAGTDV  115 (162)
Q Consensus        96 ------v~~~~~~~~~~~~~~~~~~~  115 (162)
                            +.--.++|||+.++.+..|.
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG  257 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDG  257 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCC
Confidence                  11123677777777776663

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.71  E-value=1.8  Score=30.97  Aligned_cols=109  Identities=13%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             cEEEEEeCCCCcEEEEeeCCC--cEEEEECCCCeeeeeccCCCC-CEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDS--QVQIWDLKKQKNVTDFQLDAG-PIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg--~i~~wd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      -...+.|.++|.++-+.+.-|  .|+.+|+.+++.......... -=..++.-.+ +.....=.++...+||..+.+.+.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence            446677767788887777777  588899999987766554331 1223444333 333334457888999999888888


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEec--ccEEEEEeCCc
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAG--TDVRVFLCKQW  123 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~i~~~~~~  123 (162)
                      ++....  +-..++.  +++.+....  ..+..++..++
T Consensus       125 ~~~y~~--EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f  159 (264)
T PF05096_consen  125 TFPYPG--EGWGLTS--DGKRLIMSDGSSRLYFLDPETF  159 (264)
T ss_dssp             EEE-SS--S--EEEE--CSSCEEEE-SSSEEEEE-TTT-
T ss_pred             EEecCC--cceEEEc--CCCEEEEECCccceEEECCccc
Confidence            877643  3466663  333333332  23544443333

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.70  E-value=2.4  Score=32.23  Aligned_cols=97  Identities=20%  Similarity=0.248  Sum_probs=56.5

Q ss_pred             EEEEEEccCCCEEEEE-eCC----CeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc-----------cEE
Q psy12456         53 IQALSFSENGYYLATA-ADE----NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-----------DVR  116 (162)
Q Consensus        53 v~~i~~~~~~~~l~s~-~~d----~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~  116 (162)
                      +...+++|++++++.+ +..    .++++.|+.+.+.+........  ...+.|.++++.+.....           ..+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            3357899999998876 333    3699999988765443211111  233899999877655431           234


Q ss_pred             EEEeCCc----eEEEEeecCcc--cEEEEEECCCCceEEEe
Q psy12456        117 VFLCKQW----QELAMFNEHTA--MVTGVRFGTHAHYLASS  151 (162)
Q Consensus       117 i~~~~~~----~~~~~~~~h~~--~v~~~~~s~~~~~l~s~  151 (162)
                      |+..+.+    +....+.+...  ....+..++++++++..
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~  244 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFIS  244 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEE
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEE
Confidence            5544322    11233443332  25678889999987644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4441|consensus

Probab=93.63  E-value=2.6  Score=33.74  Aligned_cols=131  Identities=17%  Similarity=0.204  Sum_probs=66.4

Q ss_pred             CCcEEEEeeCCCc-----EEEEECCCCeeeeeccCC--CCCEEEEEEccCCCEEEEEeCCC------eEEEEEcccCc--
Q psy12456         19 DGLIFGIGTSDSQ-----VQIWDLKKQKNVTDFQLD--AGPIQALSFSENGYYLATAADEN------CVKLWDLRKLK--   83 (162)
Q Consensus        19 ~g~~~a~g~~dg~-----i~~wd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~d~------~v~~wd~~~~~--   83 (162)
                      +|.+.|+|+.||.     +..||.++.+-...-...  ......+.+  ++...+.|+.++      ++..||..+.+  
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            6889999999976     667887776533222111  122222233  677888888654      46677765422  


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc-------EEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-------VRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      ....+... +. -..++ .-++...+.|+.+       +..++.  +.|..+..+......+.....  +++..+.|+.|
T Consensus       458 ~~~~M~~~-R~-~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~  532 (571)
T KOG4441|consen  458 LIAPMNTR-RS-GFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFD  532 (571)
T ss_pred             ecCCcccc-cc-cceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEeccc
Confidence            22222111 11 11122 2345666666654       233432  234444333333332222322  46677788877


Q ss_pred             Ce
Q psy12456        155 RT  156 (162)
Q Consensus       155 ~~  156 (162)
                      +.
T Consensus       533 ~~  534 (571)
T KOG4441|consen  533 GN  534 (571)
T ss_pred             Cc
Confidence            64

>KOG2377|consensus

Probab=93.56  E-value=1.2  Score=34.50  Aligned_cols=104  Identities=8%  Similarity=0.201  Sum_probs=63.8

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee----eeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN----VTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      -...+|-++.|++|.+.+|+--.+.+|.+++....++    ..+.+.....|.+..|+.. .-++.-...| +.+|-...
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            3455899999999999999999999999999854333    2333444556888888755 5566666655 56665432


Q ss_pred             Cc-ceeEEeeCCCCCeeEEEECCCCCEEEEec
Q psy12456         82 LK-NFKTLQLDPNYEIRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        82 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  112 (162)
                      .+ .++..+. +...|.=..|.++-..++.++
T Consensus       142 ekrslRlVks-~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  142 EKRSLRLVKS-HNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             hhhhhhhhhh-cccCccEEEEccccceEeeec
Confidence            21 1111111 122244455666655544444

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.55  E-value=0.27  Score=38.88  Aligned_cols=39  Identities=13%  Similarity=0.290  Sum_probs=29.0

Q ss_pred             CCcEEEEEeCC----CCcEEEEeeCCCcEEEEECCCCeeeeec
Q psy12456          8 GPTLTTAQLHP----DGLIFGIGTSDSQVQIWDLKKQKNVTDF   46 (162)
Q Consensus         8 ~~~v~~~~~~~----~g~~~a~g~~dg~i~~wd~~~~~~~~~~   46 (162)
                      ...+.++++++    +..++++-+.|+++|+||+++++.+.+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  214 SSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             CCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            34556677777    7789999999999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG4649|consensus

Probab=93.47  E-value=2  Score=30.78  Aligned_cols=98  Identities=11%  Similarity=0.104  Sum_probs=67.3

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeE
Q psy12456         19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRD   98 (162)
Q Consensus        19 ~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~   98 (162)
                      ...++..|+-.+.+.--|..+|+.+.+-... ..|.+-+.- -|.+++.|...+.+.+-+.++.+....+.......++.
T Consensus        22 skT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             CceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            3457888999999999999998876443221 223222221 46789999999999999998876666655433333333


Q ss_pred             EEECCCCCEEEEecccEEEEE
Q psy12456         99 LCFDQSGTYMAVAGTDVRVFL  119 (162)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~i~~  119 (162)
                       ...+++..+-.++.|.+.+-
T Consensus       100 -~~d~~~glIycgshd~~~ya  119 (354)
T KOG4649|consen  100 -QCDFDGGLIYCGSHDGNFYA  119 (354)
T ss_pred             -EEcCCCceEEEecCCCcEEE
Confidence             45788899999998865554

>PHA03098 kelch-like protein; Provisional

Probab=93.44  E-value=3.1  Score=32.81  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=34.0

Q ss_pred             CCcEEEEeeCCC-----cEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEccc
Q psy12456         19 DGLIFGIGTSDS-----QVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAADE------NCVKLWDLRK   81 (162)
Q Consensus        19 ~g~~~a~g~~dg-----~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d------~~v~~wd~~~   81 (162)
                      ++++++.|+.++     .+..||..+++....  +......... + .-++..++.|+.+      ..+..||..+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~-~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCV-V-NVNNLIYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceE-E-EECCEEEEECCcCCCCcccceEEEEeCCC
Confidence            678888888763     467788877653321  1111111111 2 2256667777632      3577888764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.41  E-value=2  Score=30.51  Aligned_cols=97  Identities=13%  Similarity=0.150  Sum_probs=55.3

Q ss_pred             CEEEEEEccCCCEEEEEe--CC-CeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEe-CCc--
Q psy12456         52 PIQALSFSENGYYLATAA--DE-NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLC-KQW--  123 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~~--~d-~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~-~~~--  123 (162)
                      .+.+.+++++++.++...  .+ ..+.++...  .......  ....+..-+|++++...+....+  .++... ...  
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            678899999998877666  32 345555433  2222221  22246777899997766665443  333321 111  


Q ss_pred             eEEEE-eecCcccEEEEEECCCCceEEEee
Q psy12456        124 QELAM-FNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus       124 ~~~~~-~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                      ..+.. ...-...|..+++||||..+|--.
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~  130 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVV  130 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEE
Confidence            12111 111112899999999998776544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.29  E-value=2.5  Score=31.30  Aligned_cols=100  Identities=18%  Similarity=0.254  Sum_probs=53.8

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCe---eeeecc----CCCCCEEEEEEccC----CCEEEEEeCC------C-
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK---NVTDFQ----LDAGPIQALSFSEN----GYYLATAADE------N-   72 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~---~~~~~~----~~~~~v~~i~~~~~----~~~l~s~~~d------~-   72 (162)
                      .+++++.|||.++++ ...|.|++++. .+.   .+..+.    ........++++|+    +...+..+..      . 
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            468999999988775 55999999993 333   233331    23456889999994    4444444421      1 


Q ss_pred             -eEEEEEcccC-------cce-eEEee--CCCCCeeEEEECCCCCEEEEec
Q psy12456         73 -CVKLWDLRKL-------KNF-KTLQL--DPNYEIRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        73 -~v~~wd~~~~-------~~~-~~~~~--~~~~~v~~~~~~~~~~~~~~~~  112 (162)
                       .|.-|.+...       +.+ .....  ........+.|.|+|.+.++.+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G  132 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG  132 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence             2332333221       111 11111  1223457799999997665544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.27  E-value=0.49  Score=23.02  Aligned_cols=40  Identities=18%  Similarity=0.321  Sum_probs=26.6

Q ss_pred             CCCcEE-EEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEE
Q psy12456         18 PDGLIF-GIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSF   58 (162)
Q Consensus        18 ~~g~~~-a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~   58 (162)
                      |+++.+ ++.-.++.|.++|..+++.+..+.....| ..++|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P-~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYP-FGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCC-ceEEe
Confidence            566644 44556889999999888888777654333 24444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.06  E-value=2.4  Score=33.58  Aligned_cols=61  Identities=15%  Similarity=0.141  Sum_probs=39.9

Q ss_pred             CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeC
Q psy12456         30 SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLD   91 (162)
Q Consensus        30 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~   91 (162)
                      |.+.-+|+.+++..-.++.......+ .+...+..++.++.|+.++++|.++.+.+-+++..
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~-~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGG-VLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCc-ceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            55777888888877665532211111 11124557777888999999999998877666553

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.02  E-value=2.6  Score=30.69  Aligned_cols=149  Identities=15%  Similarity=0.191  Sum_probs=87.2

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCC-CCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee-
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK-   86 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~-   86 (162)
                      ..++++.|+|+.+.|.+......-.|+=...|+.+++++... .--.+|.+..+++++++--.+..+.+..+.....+. 
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~  165 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS  165 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence            348999999988876666665666665445688888776431 123456777778777777778888877765432211 


Q ss_pred             ----EEeeC---C-CCCeeEEEECCCCCEEEEeccc--EEEEEeCCce-E--EEEeecCc-------ccEEEEEECCC-C
Q psy12456         87 ----TLQLD---P-NYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ-E--LAMFNEHT-------AMVTGVRFGTH-A  145 (162)
Q Consensus        87 ----~~~~~---~-~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~-~--~~~~~~h~-------~~v~~~~~s~~-~  145 (162)
                          ++.+.   . ......++|.|..+.+..+-..  ++|+.++... .  +.....+.       ..|+++.|.+. +
T Consensus       166 ~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~  245 (316)
T COG3204         166 AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITN  245 (316)
T ss_pred             ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCC
Confidence                22211   1 2246789999987777666543  6777654321 1  11111111       23677778753 4


Q ss_pred             ceEEEeecCCeE
Q psy12456        146 HYLASSSMDRTL  157 (162)
Q Consensus       146 ~~l~s~s~D~~i  157 (162)
                      ..++-+..++.+
T Consensus       246 ~LLVLS~ESr~l  257 (316)
T COG3204         246 SLLVLSDESRRL  257 (316)
T ss_pred             cEEEEecCCceE
Confidence            455555444443

>PHA02790 Kelch-like protein; Provisional

Probab=92.88  E-value=3.7  Score=32.11  Aligned_cols=136  Identities=10%  Similarity=0.055  Sum_probs=66.7

Q ss_pred             CCCcEEEEeeCCC--cEEEEECCCCeeee--eccCCCCCEEEEEEccCCCEEEEEeCCC---eEEEEEcccCc--ceeEE
Q psy12456         18 PDGLIFGIGTSDS--QVQIWDLKKQKNVT--DFQLDAGPIQALSFSENGYYLATAADEN---CVKLWDLRKLK--NFKTL   88 (162)
Q Consensus        18 ~~g~~~a~g~~dg--~i~~wd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d~---~v~~wd~~~~~--~~~~~   88 (162)
                      -+|.+++.|+.++  .+..||..+++...  .+.........++  -+++..+.|+.++   .+..||.++.+  ....+
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence            4688889998643  57788887664432  2221111122222  3677778877653   46678875421  11111


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEecccEEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEeecC-----CeEEEee
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD-----RTLKLYS  161 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D-----~~i~iw~  161 (162)
                      .. +.... ++ ..-+++..+.|+. ..+++.  +.|..+..+.........+.+  +++..+.||.+     .++..||
T Consensus       395 ~~-~r~~~-~~-~~~~~~IYv~GG~-~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        395 YY-PHYKS-CA-LVFGRRLFLVGRN-AEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             CC-ccccc-eE-EEECCEEEEECCc-eEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEE
Confidence            11 11111 11 1234555555543 344543  346555443322222222323  57777888765     3455555

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.78  E-value=2.9  Score=30.65  Aligned_cols=103  Identities=14%  Similarity=0.238  Sum_probs=51.6

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc-cEEEEEe-CCceEEE
Q psy12456         50 AGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-DVRVFLC-KQWQELA  127 (162)
Q Consensus        50 ~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~-~~~~~~~  127 (162)
                      .+.+..+.-++||.++++++.-..+.-||-... .-..........+..+.|.|++.+...+.. .++.-.. ...+...
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~  222 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWS  222 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE-
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccc
Confidence            467888888999999988877666777886421 111111112346999999999877555422 2333220 1111111


Q ss_pred             E----eecCcccEEEEEECCCCceEEEeec
Q psy12456        128 M----FNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus       128 ~----~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                      .    ...-...+..++|.+++..+++|+.
T Consensus       223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~  252 (302)
T PF14870_consen  223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGS  252 (302)
T ss_dssp             --B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred             cccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence            1    1112233789999988888876654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.76  E-value=2.3  Score=29.44  Aligned_cols=48  Identities=29%  Similarity=0.478  Sum_probs=36.3

Q ss_pred             CcEEEEeeCCCcEEEEECCC--CeeeeeccCCCCCEEEEEEccCCCEEEEEe
Q psy12456         20 GLIFGIGTSDSQVQIWDLKK--QKNVTDFQLDAGPIQALSFSENGYYLATAA   69 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~   69 (162)
                      +.+|++ ....+|.+|++.+  .++.++|..- +.|..++++..|.||++-=
T Consensus        29 d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVA-ASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEE-cCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence            344443 6668899999983  4567777654 6889999999999999874

>KOG2280|consensus

Probab=92.69  E-value=4.9  Score=33.04  Aligned_cols=81  Identities=11%  Similarity=0.184  Sum_probs=49.6

Q ss_pred             EEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee-EEe-eCCCCCeeEEEECCCCCEEE
Q psy12456         32 VQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK-TLQ-LDPNYEIRDLCFDQSGTYMA  109 (162)
Q Consensus        32 i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~-~~~-~~~~~~v~~~~~~~~~~~~~  109 (162)
                      |+||+. +|..+..+....+++..+.|+.+. .|+....||++.+|++....... ..- ......|..+.+..+|-.+.
T Consensus        66 I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavl  143 (829)
T KOG2280|consen   66 IRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVL  143 (829)
T ss_pred             EEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEE
Confidence            778875 456665555545578899999775 56677899999999985311111 010 01122355566666776666


Q ss_pred             Eeccc
Q psy12456        110 VAGTD  114 (162)
Q Consensus       110 ~~~~~  114 (162)
                      +.+.+
T Consensus       144 t~~g~  148 (829)
T KOG2280|consen  144 TVSGQ  148 (829)
T ss_pred             ecCCc
Confidence            66554

>PHA02713 hypothetical protein; Provisional

Probab=92.55  E-value=4.5  Score=32.31  Aligned_cols=62  Identities=10%  Similarity=0.116  Sum_probs=36.0

Q ss_pred             CCCcEEEEeeCC------CcEEEEECCCCeeee--eccCCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEEccc
Q psy12456         18 PDGLIFGIGTSD------SQVQIWDLKKQKNVT--DFQLDAGPIQALSFSENGYYLATAADEN-----CVKLWDLRK   81 (162)
Q Consensus        18 ~~g~~~a~g~~d------g~i~~wd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d~-----~v~~wd~~~   81 (162)
                      -++.+++.|+.+      ..+..||.++++...  .+.........++  -++...+.|+.++     ++..||..+
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~  376 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGD  376 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCC
Confidence            367888888864      346788887765322  1111111222222  2577778887653     477898764

>KOG2247|consensus

Probab=92.52  E-value=0.011  Score=45.26  Aligned_cols=138  Identities=12%  Similarity=0.228  Sum_probs=83.1

Q ss_pred             EEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEE-EeCCCeEEEEEcccCcceeEEeeCC
Q psy12456         14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT-AADENCVKLWDLRKLKNFKTLQLDP   92 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~d~~v~~wd~~~~~~~~~~~~~~   92 (162)
                      ..|-|.+.-++.++.+..+..||- .++..-... ..+....++|+.++..++. +-..+.+.+||+.+.. .+.+....
T Consensus        40 ~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tqqLE~gg  116 (615)
T KOG2247|consen   40 HRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQQLESGG  116 (615)
T ss_pred             eeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HHHHhccC
Confidence            456777777999999999999994 344333222 2234456788877665444 4556789999996422 12222211


Q ss_pred             CCCeeEEEECCCCCEEEEecccEEEEEeCCce--EEEEeecCcccEEEEEECCCCceEEEeecCC
Q psy12456         93 NYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQ--ELAMFNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        93 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                      ...-.-+.|++....++.+....++..++...  .+.....|...++.+++.+.++. +.++.|.
T Consensus       117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~  180 (615)
T KOG2247|consen  117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDN  180 (615)
T ss_pred             cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHH
Confidence            11122267888888888876554444444332  22223348889999999886644 3444443

>KOG3630|consensus

Probab=92.12  E-value=2  Score=36.90  Aligned_cols=142  Identities=8%  Similarity=0.033  Sum_probs=80.2

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCC--cEEEEECCCCee-----eeeccCC------CCCEEEEEEccCC-CEEEEEeCCCe
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDS--QVQIWDLKKQKN-----VTDFQLD------AGPIQALSFSENG-YYLATAADENC   73 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg--~i~~wd~~~~~~-----~~~~~~~------~~~v~~i~~~~~~-~~l~s~~~d~~   73 (162)
                      ..+|......+|+...++....+  .|..||+++-..     ..-|..|      ......+.|+|.= ...+....|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            34556677788877655544433  677899975211     1111111      1234567788742 23455667787


Q ss_pred             EEEEEcccCc-ceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCC-ceEEEEeec----CcccEEEEEECCCCce
Q psy12456         74 VKLWDLRKLK-NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ-WQELAMFNE----HTAMVTGVRFGTHAHY  147 (162)
Q Consensus        74 v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~----h~~~v~~~~~s~~~~~  147 (162)
                      |++..+.-.. .+..+  .-....++++|+|.|+.++.|..+..+.-+.. .+..+++.+    -...|.++.|-....+
T Consensus       180 l~V~~~~~~~~~v~s~--p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSF--PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhhhhhhccc--CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeE
Confidence            8776654221 12222  22345799999999999999987754433322 222222211    1456899999766666


Q ss_pred             EEEe
Q psy12456        148 LASS  151 (162)
Q Consensus       148 l~s~  151 (162)
                      ++.-
T Consensus       258 lvvy  261 (1405)
T KOG3630|consen  258 LVVY  261 (1405)
T ss_pred             EEEe
Confidence            6653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.11  E-value=2.2  Score=29.55  Aligned_cols=50  Identities=18%  Similarity=0.214  Sum_probs=33.9

Q ss_pred             CEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEec
Q psy12456         63 YYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        63 ~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  112 (162)
                      ..|+.+...+.|.+|++..........+..-..|..+.++..|.|+++--
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEE
Confidence            34444455577999999843333333334445788999999999999954

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.98  E-value=3.7  Score=29.96  Aligned_cols=99  Identities=15%  Similarity=0.180  Sum_probs=64.7

Q ss_pred             EEEEEccC-CCEEEEEeCCCeE-EEEEcccCcceeEEeeCC-CCCeeEEEECCCCCEEEEeccc-------EEEEEeCC-
Q psy12456         54 QALSFSEN-GYYLATAADENCV-KLWDLRKLKNFKTLQLDP-NYEIRDLCFDQSGTYMAVAGTD-------VRVFLCKQ-  122 (162)
Q Consensus        54 ~~i~~~~~-~~~l~s~~~d~~v-~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~-------~~i~~~~~-  122 (162)
                      ..|+++|. ..-++.+-..|+. .++|....+....+.... +.---.=+|||+|.++...-.|       +-||+.+. 
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            35788884 4556677777764 578886555433322111 1001112699999998775443       45677543 


Q ss_pred             ceEEEEeecCcccEEEEEECCCCceEEEee
Q psy12456        123 WQELAMFNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus       123 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                      ++.+.++..|.-.-..+.+.+||+.++.+.
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeC
Confidence            567788899988889999999999987653

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=91.84  E-value=4.5  Score=30.69  Aligned_cols=137  Identities=15%  Similarity=0.077  Sum_probs=65.4

Q ss_pred             EeCCCCcEEEEeeC-CCc--EEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeC
Q psy12456         15 QLHPDGLIFGIGTS-DSQ--VQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLD   91 (162)
Q Consensus        15 ~~~~~g~~~a~g~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~   91 (162)
                      .|.+||+.|+-++. ||.  +.+.|+.+++..+.-.+.........++|+++.++-.-....|.--|+++.+....+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            36788876555544 554  666788877665433322122224567788888776666678888899887755444443


Q ss_pred             CCCCeeEEEE--CCCCCEEEEecc---c-------------------EEEEE--eCCceEEEEeecCcccEEEEEECCCC
Q psy12456         92 PNYEIRDLCF--DQSGTYMAVAGT---D-------------------VRVFL--CKQWQELAMFNEHTAMVTGVRFGTHA  145 (162)
Q Consensus        92 ~~~~v~~~~~--~~~~~~~~~~~~---~-------------------~~i~~--~~~~~~~~~~~~h~~~v~~~~~s~~~  145 (162)
                      .. -.-...|  +.++..++..-.   +                   .+|+.  .+++ ..+.+-.-..++.++-|||..
T Consensus       122 ~~-~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG-~~~~v~~~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  122 DD-WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG-ERKVVFEDTDWLGHVQFSPTD  199 (386)
T ss_dssp             TT-EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEEESS-EEEEEEETTE
T ss_pred             cc-cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC-ceeEEEecCccccCcccCCCC
Confidence            32 2222334  445555433211   1                   11111  1222 223333345678899999876


Q ss_pred             ceEEEeec
Q psy12456        146 HYLASSSM  153 (162)
Q Consensus       146 ~~l~s~s~  153 (162)
                      ..++.-+.
T Consensus       200 p~li~fCH  207 (386)
T PF14583_consen  200 PTLIMFCH  207 (386)
T ss_dssp             EEEEEEEE
T ss_pred             CCEEEEec
Confidence            66655443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=91.79  E-value=5.7  Score=31.82  Aligned_cols=112  Identities=13%  Similarity=0.200  Sum_probs=65.9

Q ss_pred             cEEEEEeCCCC-----cEEEEeeCCCcEEEEECCC-----CeeeeeccCCC-C--C--EEEEEEccCCCEEEEEeCCCeE
Q psy12456         10 TLTTAQLHPDG-----LIFGIGTSDSQVQIWDLKK-----QKNVTDFQLDA-G--P--IQALSFSENGYYLATAADENCV   74 (162)
Q Consensus        10 ~v~~~~~~~~g-----~~~a~g~~dg~i~~wd~~~-----~~~~~~~~~~~-~--~--v~~i~~~~~~~~l~s~~~d~~v   74 (162)
                      -|..+.|.|-+     .+||+ --...|.||-+.-     ++.+.+-..+- .  |  -.++.|+|....|+.=.....-
T Consensus        58 hV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   58 HVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             eeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            35678888842     35555 4457899998852     23332221111 1  1  1356799988877665544434


Q ss_pred             EEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc-cEEEEEeCC
Q psy12456         75 KLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-DVRVFLCKQ  122 (162)
Q Consensus        75 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~~  122 (162)
                      .+++++......+........|.|.||.+||..++++-. .++-|.|+.
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            456665333333333344567999999999987776533 466666544

>PRK10115 protease 2; Provisional

Probab=91.70  E-value=6.6  Score=32.32  Aligned_cols=103  Identities=10%  Similarity=0.074  Sum_probs=59.6

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCC-----CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC------CeEE
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSD-----SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE------NCVK   75 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d------~~v~   75 (162)
                      +...+....++|||+++|.+...     ..+++.|+.+++.+...-... . ..++|.+|++.|+....+      ..|.
T Consensus       125 ~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~  202 (686)
T PRK10115        125 EFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVW  202 (686)
T ss_pred             CcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence            44567888999999998876553     237888888776432211111 1 468999998877666442      3566


Q ss_pred             EEEcccCc--ceeEEeeCCCCCee-EEEECCCCCEEEEec
Q psy12456         76 LWDLRKLK--NFKTLQLDPNYEIR-DLCFDQSGTYMAVAG  112 (162)
Q Consensus        76 ~wd~~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~  112 (162)
                      .+++.+..  ....+.. ...... ....+.++++++..+
T Consensus       203 ~h~lgt~~~~d~lv~~e-~~~~~~~~~~~s~d~~~l~i~~  241 (686)
T PRK10115        203 RHTIGTPASQDELVYEE-KDDTFYVSLHKTTSKHYVVIHL  241 (686)
T ss_pred             EEECCCChhHCeEEEee-CCCCEEEEEEEcCCCCEEEEEE
Confidence            67776652  2222221 111122 333344777665543

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.58  E-value=6.8  Score=32.26  Aligned_cols=111  Identities=10%  Similarity=0.156  Sum_probs=67.4

Q ss_pred             CcEEEEEeCC--CCcEEEEeeCCCcEEEEECCC-------C-------------eeeeeccCCCCCEEEEEEc--cCCCE
Q psy12456          9 PTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKK-------Q-------------KNVTDFQLDAGPIQALSFS--ENGYY   64 (162)
Q Consensus         9 ~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~-------~-------------~~~~~~~~~~~~v~~i~~~--~~~~~   64 (162)
                      ..|+.+.+.-  ...+|+++..||.|.+|.+++       .             +|-..+.. .....++++.  ...++
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rl  179 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRL  179 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceE
Confidence            4466665554  666899999999999996631       0             01122222 2467889998  77888


Q ss_pred             EEEEeCCCeEEEEEcccC--cceeEEeeCCCCCeeEEEECCCC-----C-EEEEecccEEEEEe
Q psy12456         65 LATAADENCVKLWDLRKL--KNFKTLQLDPNYEIRDLCFDQSG-----T-YMAVAGTDVRVFLC  120 (162)
Q Consensus        65 l~s~~~d~~v~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~-----~-~~~~~~~~~~i~~~  120 (162)
                      +|.+++...|.+|=+...  +........+...|.+++|-++.     . ++++++-...+|.+
T Consensus       180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~  243 (717)
T PF08728_consen  180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTF  243 (717)
T ss_pred             EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEE
Confidence            998888888887665431  11111111233458889997643     2 56666655555543

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=91.34  E-value=4.3  Score=33.81  Aligned_cols=146  Identities=13%  Similarity=0.162  Sum_probs=75.8

Q ss_pred             ccCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCC------CCEEEEEEccCCCEEEEEeCCCeEEE
Q psy12456          3 ASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA------GPIQALSFSENGYYLATAADENCVKL   76 (162)
Q Consensus         3 ~~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~------~~v~~i~~~~~~~~l~s~~~d~~v~~   76 (162)
                      ..|.-.-+|-++.|+.|.+.++....+..|.++|- .-.++..+....      +.-..+.|......+---+    ++.
T Consensus       107 ivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k-~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~----~ra  181 (1243)
T COG5290         107 IVGKVSNGIVAASWSADEKTWCVVTSTREILLFDK-YFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKG----ARA  181 (1243)
T ss_pred             hhccccCceEEEeeccCCceEEEEEcCceEEEEec-cccccchhhcchhHHHHhccceEeeecccchhccccc----hhh
Confidence            45666778999999999999999999999999873 234443333221      1223455654322221111    110


Q ss_pred             EEcccCcceeEEeeCC----CCCeeEEEECCCCCEEEEeccc------EEEEEeCCceEEEEeecCcccEEEEEECCCCc
Q psy12456         77 WDLRKLKNFKTLQLDP----NYEIRDLCFDQSGTYMAVAGTD------VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH  146 (162)
Q Consensus        77 wd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~  146 (162)
                       .+|............    ...-.-++|..+..|.+++..+      .++|.- .++.-..-...++.-..++|-|+|.
T Consensus       182 -qlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS  259 (1243)
T COG5290         182 -QLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGS  259 (1243)
T ss_pred             -hccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeecc-ccccccccCCcccchhccccccCCc
Confidence             122111110000000    0011346788888888887654      334321 1111111112233334588999999


Q ss_pred             eEEEeecCC
Q psy12456        147 YLASSSMDR  155 (162)
Q Consensus       147 ~l~s~s~D~  155 (162)
                      .++|-+.|+
T Consensus       260 ~~ati~td~  268 (1243)
T COG5290         260 KYATIGTDG  268 (1243)
T ss_pred             eeeeeccCC
Confidence            999877554

>KOG4460|consensus

Probab=90.91  E-value=3  Score=32.97  Aligned_cols=80  Identities=10%  Similarity=0.092  Sum_probs=53.2

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECC---------CCeee---eeccCC--------CCCEEEEEEccCC---
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK---------KQKNV---TDFQLD--------AGPIQALSFSENG---   62 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~---------~~~~~---~~~~~~--------~~~v~~i~~~~~~---   62 (162)
                      .-...|..+-.++.|..+|..+.+|.+.++=.+         .++++   +++...        .-.+...+|+|+.   
T Consensus       101 ~V~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D  180 (741)
T KOG4460|consen  101 PVLFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD  180 (741)
T ss_pred             cceEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCC
Confidence            345567889999999999999999966654211         12221   111110        1235677899964   


Q ss_pred             CEEEEEeCCCeEEEEEcccCcce
Q psy12456         63 YYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus        63 ~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      ..|..-..|.++++||+.+...+
T Consensus       181 ~hL~iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  181 PHLVLLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             ceEEEEecCcEEEEEecCCcchh
Confidence            67777788999999999765543

>KOG1900|consensus

Probab=90.88  E-value=8.2  Score=33.77  Aligned_cols=135  Identities=10%  Similarity=0.193  Sum_probs=79.8

Q ss_pred             eCCCcEEEEECCCCeeeeeccCCCCCEEEEEEc--------cCCCEEEEEeCCCeEEEEEcccC----cc---eeEEeeC
Q psy12456         27 TSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFS--------ENGYYLATAADENCVKLWDLRKL----KN---FKTLQLD   91 (162)
Q Consensus        27 ~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~--------~~~~~l~s~~~d~~v~~wd~~~~----~~---~~~~~~~   91 (162)
                      +.|..+.+|+++++.....+.+-...|-.+..-        |.=++++.-.....|.++-+...    ..   ...++..
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            467889999999977777777655566655532        22233333343444555544211    10   1112211


Q ss_pred             -CCCCeeEEEECCCCCEEEEecccEEEEEe-----CCc--e-----------------EEEEee-cCcccEEEEEECCCC
Q psy12456         92 -PNYEIRDLCFDQSGTYMAVAGTDVRVFLC-----KQW--Q-----------------ELAMFN-EHTAMVTGVRFGTHA  145 (162)
Q Consensus        92 -~~~~v~~~~~~~~~~~~~~~~~~~~i~~~-----~~~--~-----------------~~~~~~-~h~~~v~~~~~s~~~  145 (162)
                       ....++|+....+|+.+.+|-.+ .+|.+     ..|  +                 .+..+. .+..+|..+......
T Consensus       176 ~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             cCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence             13458888888899998887655 55542     011  0                 012222 567789998887655


Q ss_pred             ceEEEeecCCeEEEeeC
Q psy12456        146 HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       146 ~~l~s~s~D~~i~iw~~  162 (162)
                      ..+-+=+..++|+.|++
T Consensus       255 ~IlY~lsek~~v~~Y~i  271 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDI  271 (1311)
T ss_pred             ceeeeeccCceEEEEEc
Confidence            66667778889999985

>KOG3616|consensus

Probab=90.11  E-value=1.1  Score=36.81  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ   40 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~   40 (162)
                      .....++++.-||.|.-++++..||.+++|++...
T Consensus        12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r   46 (1636)
T KOG3616|consen   12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR   46 (1636)
T ss_pred             cccceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence            45677899999999999999999999999988544

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.09  E-value=4.8  Score=27.99  Aligned_cols=55  Identities=18%  Similarity=0.304  Sum_probs=37.9

Q ss_pred             EccCCCEEEEEeCCCeEEEEEcccCcceeEE-------ee------CCCCCeeEEEECCCCCEEEEec
Q psy12456         58 FSENGYYLATAADENCVKLWDLRKLKNFKTL-------QL------DPNYEIRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        58 ~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~-------~~------~~~~~v~~~~~~~~~~~~~~~~  112 (162)
                      +..++++|+.-..+|.+.+||+.+.+.+...       ..      .....|..+.++.+|.-+++-+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls   85 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS   85 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence            4456888999999999999999876643211       10      1234577888888887766644

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=89.95  E-value=1  Score=20.13  Aligned_cols=27  Identities=15%  Similarity=0.246  Sum_probs=21.1

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEE
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWD   36 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd   36 (162)
                      ++.|.+++..+  .+++++++-+-+|+|.
T Consensus         1 gE~i~aia~g~--~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    1 GEEIEAIAAGD--SWVAVATSAGYLRIFS   27 (27)
T ss_pred             CceEEEEEccC--CEEEEEeCCCeEEecC
Confidence            35678877774  5889999999999983

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>smart00564 PQQ beta-propeller repeat

Probab=89.82  E-value=1.1  Score=20.40  Aligned_cols=25  Identities=16%  Similarity=0.262  Sum_probs=19.6

Q ss_pred             EEEEeeCCCcEEEEECCCCeeeeec
Q psy12456         22 IFGIGTSDSQVQIWDLKKQKNVTDF   46 (162)
Q Consensus        22 ~~a~g~~dg~i~~wd~~~~~~~~~~   46 (162)
                      .+..++.+|.+..+|.++++.+..+
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            4666788999999999888776543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG2109|consensus

Probab=89.40  E-value=0.92  Score=36.46  Aligned_cols=84  Identities=24%  Similarity=0.410  Sum_probs=56.6

Q ss_pred             CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE-------EeeCC----CCCeeE
Q psy12456         30 SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT-------LQLDP----NYEIRD   98 (162)
Q Consensus        30 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~-------~~~~~----~~~v~~   98 (162)
                      ..+.+=|+.+.+.+..|++|..++..++|.+.+..+++++-.| ..+.++|.++.+.+       ...++    ...+..
T Consensus       295 ~~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g-~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqd  373 (788)
T KOG2109|consen  295 NLVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITG-RNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQD  373 (788)
T ss_pred             ceEEeecccchhhhhheeeecCcccccccccCceEEEEEeecc-ceeeeEEeccccccccccccccccchhcchHHHHHH
Confidence            3466667777788889999999999999999999999998766 34444443332211       11111    123556


Q ss_pred             EEECCCCCEEEEeccc
Q psy12456         99 LCFDQSGTYMAVAGTD  114 (162)
Q Consensus        99 ~~~~~~~~~~~~~~~~  114 (162)
                      +||+....+.+.++.+
T Consensus       374 icfs~~s~~r~~gsc~  389 (788)
T KOG2109|consen  374 ICFSEVSTIRTAGSCE  389 (788)
T ss_pred             HhhhhhcceEeecccC
Confidence            7888877777776643

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.27  E-value=4.1  Score=26.04  Aligned_cols=86  Identities=9%  Similarity=0.126  Sum_probs=53.2

Q ss_pred             EEEEeCCCCcEEEEeeCCCcEEEEECCCCe--------eeeeccCCCCCEEEEEEcc-----CCCEEEEEeCCCeEEEEE
Q psy12456         12 TTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--------NVTDFQLDAGPIQALSFSE-----NGYYLATAADENCVKLWD   78 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~--------~~~~~~~~~~~v~~i~~~~-----~~~~l~s~~~d~~v~~wd   78 (162)
                      +.-.|......|+.++..|+|.|++.....        .+..+.. ...|++++-.+     +...|+.|+.. .+-+||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~t-~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEeccc-eEEEEE
Confidence            455677777788999999999999986432        3344433 24677776543     24567766654 588999


Q ss_pred             cccCcceeEEeeCCCCCeeEEEE
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCF  101 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~  101 (162)
                      +.+...+-...  -...++++.+
T Consensus        80 V~~N~d~Fyke--~~DGvn~i~~  100 (136)
T PF14781_consen   80 VENNSDLFYKE--VPDGVNAIVI  100 (136)
T ss_pred             cccCchhhhhh--CccceeEEEE
Confidence            97544322111  1224666655

>KOG1897|consensus

Probab=88.78  E-value=14  Score=31.55  Aligned_cols=89  Identities=12%  Similarity=0.147  Sum_probs=58.7

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc--eeEEeeCCCCCe
Q psy12456         19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN--FKTLQLDPNYEI   96 (162)
Q Consensus        19 ~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~--~~~~~~~~~~~v   96 (162)
                      +|+++|  +.+..|++|++.+++.++.-..+..++.++...-.+..++.|+--+.+.+--.+..+.  ....+.-.....
T Consensus       839 ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wm  916 (1096)
T KOG1897|consen  839 NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWM  916 (1096)
T ss_pred             CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccce
Confidence            577775  4567899999998877776667778999999999999999999888777655544331  111111112235


Q ss_pred             eEEEECCCCCEEE
Q psy12456         97 RDLCFDQSGTYMA  109 (162)
Q Consensus        97 ~~~~~~~~~~~~~  109 (162)
                      +.+.+-.+..|+.
T Consensus       917 taveil~~d~ylg  929 (1096)
T KOG1897|consen  917 TAVEILDDDTYLG  929 (1096)
T ss_pred             eeEEEecCceEEe
Confidence            5566555555543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=88.59  E-value=8.7  Score=28.88  Aligned_cols=99  Identities=10%  Similarity=0.148  Sum_probs=51.9

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCC-------e-eeeeccCC----CCCEEEEEEccCCCEEEEEeCC-------
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-------K-NVTDFQLD----AGPIQALSFSENGYYLATAADE-------   71 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-------~-~~~~~~~~----~~~v~~i~~~~~~~~l~s~~~d-------   71 (162)
                      .+.+++.++| ++++ ......++.|....       + .+..+...    ......++|.|||.+.++-+..       
T Consensus        74 p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~  151 (367)
T TIGR02604        74 VTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTR  151 (367)
T ss_pred             ccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceecc
Confidence            4678888988 5543 44443344454321       1 12234332    2457789999999876655521       


Q ss_pred             ------------CeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc
Q psy12456         72 ------------NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT  113 (162)
Q Consensus        72 ------------~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  113 (162)
                                  +.+.-+|....+ ...+..... ....++|+|+|.++++-..
T Consensus       152 ~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~r-np~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       152 PGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQ-NPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             CCCccCcccccCceEEEEecCCCe-EEEEecCcC-CCccceECCCCCEEEEccC
Confidence                        222222322211 122221122 2457899999998877543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=88.54  E-value=3.4  Score=33.88  Aligned_cols=72  Identities=10%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             CCcEEEEEeC--CCCcEEEEeeCCCcEEEEECCCCe-e--eeeccCCCCCEEEEEEccCC-----C-EEEEEeCCCeEEE
Q psy12456          8 GPTLTTAQLH--PDGLIFGIGTSDSQVQIWDLKKQK-N--VTDFQLDAGPIQALSFSENG-----Y-YLATAADENCVKL   76 (162)
Q Consensus         8 ~~~v~~~~~~--~~g~~~a~g~~dg~i~~wd~~~~~-~--~~~~~~~~~~v~~i~~~~~~-----~-~l~s~~~d~~v~~   76 (162)
                      +.++..+++|  ...+++|+++....|.||-+...+ .  ...-..+...|-+|+|-++.     . ++++++-.|.+.+
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~  242 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT  242 (717)
T ss_pred             CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence            4577889999  899999999999999998765421 1  11111245678889997642     2 7888899999998


Q ss_pred             EEc
Q psy12456         77 WDL   79 (162)
Q Consensus        77 wd~   79 (162)
                      |++
T Consensus       243 ~~I  245 (717)
T PF08728_consen  243 FKI  245 (717)
T ss_pred             EEE
Confidence            887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.56  E-value=2.1  Score=20.50  Aligned_cols=29  Identities=7%  Similarity=0.221  Sum_probs=17.6

Q ss_pred             CcccEEEEEECCCCceEEEe-ecC--CeEEEe
Q psy12456        132 HTAMVTGVRFGTHAHYLASS-SMD--RTLKLY  160 (162)
Q Consensus       132 h~~~v~~~~~s~~~~~l~s~-s~D--~~i~iw  160 (162)
                      ....-....|||||+.|+=. ..+  +.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            44456677899999877543 344  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.49  E-value=9.7  Score=28.16  Aligned_cols=97  Identities=18%  Similarity=0.355  Sum_probs=60.6

Q ss_pred             EEEeCCCCcEEEEeeCC------CcEEEEECCCCeeeeeccC---------------CCCCEEEEEEccCCCEEEEEeC-
Q psy12456         13 TAQLHPDGLIFGIGTSD------SQVQIWDLKKQKNVTDFQL---------------DAGPIQALSFSENGYYLATAAD-   70 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~d------g~i~~wd~~~~~~~~~~~~---------------~~~~v~~i~~~~~~~~l~s~~~-   70 (162)
                      ++++.++|.++++.-.+      -.|..++.+ ++.+..+..               ......+|+++|+|+.|.++.+ 
T Consensus        89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~  167 (326)
T PF13449_consen   89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES  167 (326)
T ss_pred             HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence            56667888888777667      778888876 555444311               1245789999999997776644 


Q ss_pred             ----CC--e-------EEE--EEccc-CcceeE--EeeC------CCCCeeEEEECCCCCEEEE
Q psy12456         71 ----EN--C-------VKL--WDLRK-LKNFKT--LQLD------PNYEIRDLCFDQSGTYMAV  110 (162)
Q Consensus        71 ----d~--~-------v~~--wd~~~-~~~~~~--~~~~------~~~~v~~~~~~~~~~~~~~  110 (162)
                          |+  .       +++  ||..+ .+....  +...      ....+.++.+-+++++++.
T Consensus       168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                22  1       455  44433 111222  2333      2456888888899887766

>PRK13684 Ycf48-like protein; Provisional

Probab=87.41  E-value=9.9  Score=28.23  Aligned_cols=105  Identities=17%  Similarity=0.253  Sum_probs=58.1

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCeE-EEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEE-eC---Cce
Q psy12456         50 AGPIQALSFSENGYYLATAADENCV-KLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL-CK---QWQ  124 (162)
Q Consensus        50 ~~~v~~i~~~~~~~~l~s~~~d~~v-~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~-~~---~~~  124 (162)
                      .+.+..+.+.|++.+++++.. |.+ +.+|-. .+............+..+.+.+++..++++.....+.. .+   +|+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~  249 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS  249 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCC-ceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence            356888999999877765554 433 333321 11112222223346788899999988877765443332 22   333


Q ss_pred             EEEEe-ecCcccEEEEEECCCCceEEEeecCCeE
Q psy12456        125 ELAMF-NEHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus       125 ~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      .+..- ..-...+.++.+.|+++.++.+ .+|.+
T Consensus       250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v  282 (334)
T PRK13684        250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTL  282 (334)
T ss_pred             cccCCccccccceeeEEEcCCCCEEEEc-CCCeE
Confidence            32211 1122347788898877766544 55544

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=87.02  E-value=9  Score=28.24  Aligned_cols=68  Identities=10%  Similarity=0.151  Sum_probs=48.2

Q ss_pred             EEEEeCCCCcEEEEeeCCCcEEEEECC-------CCeeeeeccC-----CCCCEEEEEEccCCC------------EEEE
Q psy12456         12 TTAQLHPDGLIFGIGTSDSQVQIWDLK-------KQKNVTDFQL-----DAGPIQALSFSENGY------------YLAT   67 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg~i~~wd~~-------~~~~~~~~~~-----~~~~v~~i~~~~~~~------------~l~s   67 (162)
                      ..++++|.+.+.++....+...+||..       ....+-++..     .....+.+.|+....            .++.
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif  105 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF  105 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence            468899999999998889999999986       1122333332     123466777774332            3677


Q ss_pred             EeCCCeEEEEEc
Q psy12456         68 AADENCVKLWDL   79 (162)
Q Consensus        68 ~~~d~~v~~wd~   79 (162)
                      +++||+|.-|.-
T Consensus       106 ~tEdGTisaW~p  117 (336)
T TIGR03118       106 VTEDGTLSGWAP  117 (336)
T ss_pred             EeCCceEEeecC
Confidence            889999999984

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=86.48  E-value=4  Score=31.76  Aligned_cols=148  Identities=20%  Similarity=0.279  Sum_probs=74.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeee-eeccCC-CC----CEE-EEEEccCCCEEEEEeCCCeEEEE-
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLD-AG----PIQ-ALSFSENGYYLATAADENCVKLW-   77 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~-~~~~~~-~~----~v~-~i~~~~~~~~l~s~~~d~~v~~w-   77 (162)
                      +.-..|..+-..|||+++.+-+. .++.++++.+.... +++-.. .+    .|. .+..-..+.-++.++.||.|.-| 
T Consensus       218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            44556778889999998877665 67889988764321 122111 01    111 11111235568888999998775 


Q ss_pred             EcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEE-eCCceEEE----------EeecCcccEEEEEECCCCc
Q psy12456         78 DLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL-CKQWQELA----------MFNEHTAMVTGVRFGTHAH  146 (162)
Q Consensus        78 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~----------~~~~h~~~v~~~~~s~~~~  146 (162)
                      |.++... ..+.     -++...+.|...-++....+-+.+. +.....+.          -++.--.....+++||.+.
T Consensus       297 dvr~~~~-p~l~-----h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~  370 (733)
T COG4590         297 DVRRDGQ-PHLN-----HIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQA  370 (733)
T ss_pred             eeecCCC-Ccce-----eeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccc
Confidence            4443221 1111     1333444443333333333322211 11111111          1122223456688999998


Q ss_pred             eEEEeecCCeEEEee
Q psy12456        147 YLASSSMDRTLKLYS  161 (162)
Q Consensus       147 ~l~s~s~D~~i~iw~  161 (162)
                      ++++- ..+.++++.
T Consensus       371 ~Ll~e-~~gki~~~~  384 (733)
T COG4590         371 YLLSE-DQGKIRLAQ  384 (733)
T ss_pred             hheee-cCCceEEEE
Confidence            88754 345677664

>PF01011 PQQ: PQQ enzyme repeat family

Probab=86.31  E-value=2.1  Score=20.56  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=21.4

Q ss_pred             EEEeeCCCcEEEEECCCCeeeeeccC
Q psy12456         23 FGIGTSDSQVQIWDLKKQKNVTDFQL   48 (162)
Q Consensus        23 ~a~g~~dg~i~~wd~~~~~~~~~~~~   48 (162)
                      +.+++.||.+.-.|.++|+.+-.++.
T Consensus         3 v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    3 VYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            34558899999999999998887764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=85.82  E-value=2.2  Score=19.02  Aligned_cols=25  Identities=20%  Similarity=0.407  Sum_probs=17.1

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEE
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIW   35 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~w   35 (162)
                      ...+++.++|+++++=+....|++|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            3456777888877777666666654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=85.65  E-value=15  Score=28.66  Aligned_cols=53  Identities=8%  Similarity=0.047  Sum_probs=36.3

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe--eeeecc-----CCCCCEEEEEEccCC
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--NVTDFQ-----LDAGPIQALSFSENG   62 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~--~~~~~~-----~~~~~v~~i~~~~~~   62 (162)
                      .-..++|.|||.+|++--..|.|++++..++.  .+..+.     ...+....|+++|+-
T Consensus        31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            34678999999888766556999999865442  222222     124567899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=85.37  E-value=13  Score=27.58  Aligned_cols=101  Identities=15%  Similarity=0.147  Sum_probs=50.8

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEEcccCc--ceeEE---eeCCCCCeeEEEECCC----CCEEEEeccc--------E
Q psy12456         53 IQALSFSENGYYLATAADENCVKLWDLRKLK--NFKTL---QLDPNYEIRDLCFDQS----GTYMAVAGTD--------V  115 (162)
Q Consensus        53 v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~--~~~~~---~~~~~~~v~~~~~~~~----~~~~~~~~~~--------~  115 (162)
                      -++|+|.||+.++++ -..|.|++++.....  .+...   ..........++++|+    +.+.+.-+..        .
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~   82 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN   82 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence            368999999887665 558999999832111  11111   1112234788999994    3333332211        2


Q ss_pred             EEEE--eCCc-------eEE-EEeec---CcccEEEEEECCCCceEEEeecC
Q psy12456        116 RVFL--CKQW-------QEL-AMFNE---HTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus       116 ~i~~--~~~~-------~~~-~~~~~---h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      +|..  ....       +.+ .....   ....-..|.|.|++.+.++.+..
T Consensus        83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence            3322  2111       111 11122   22335669999999877776543

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.18  E-value=11  Score=26.72  Aligned_cols=117  Identities=15%  Similarity=0.215  Sum_probs=65.4

Q ss_pred             EEEEeCCCCcEEEEeeC-C--CcEEEEECCCCeeeeeccCC------CCCEEEEEEccCCCEEEEEeCCC-eEEEEEccc
Q psy12456         12 TTAQLHPDGLIFGIGTS-D--SQVQIWDLKKQKNVTDFQLD------AGPIQALSFSENGYYLATAADEN-CVKLWDLRK   81 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~-d--g~i~~wd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~s~~~d~-~v~~wd~~~   81 (162)
                      .+-.+-|||+++.+|+. +  ..+|+++.......+.+...      ...=-+...=|||+.++.|+.+. +..+|.-+.
T Consensus        70 Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~  149 (243)
T PF07250_consen   70 SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG  149 (243)
T ss_pred             cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCcc
Confidence            33456789999998886 2  34888886541111111110      11111223346899998888764 344554321


Q ss_pred             C-cceeEEee---------CCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEee
Q psy12456         82 L-KNFKTLQL---------DPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN  130 (162)
Q Consensus        82 ~-~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  130 (162)
                      . .....+..         ..-+  .-+.+.|+|++++.+..+..|++.+..+.++.+.
T Consensus       150 ~~~~~~~~~~l~~~~~~~~~nlY--P~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  150 PGPGPVTLPFLSQTSDTLPNNLY--PFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLP  206 (243)
T ss_pred             CCCCceeeecchhhhccCccccC--ceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCC
Confidence            1 11111110         0112  2356789999999999888888887766655543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=84.30  E-value=5.7  Score=23.43  Aligned_cols=42  Identities=10%  Similarity=0.119  Sum_probs=26.0

Q ss_pred             eeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEE
Q psy12456         26 GTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATA   68 (162)
Q Consensus        26 g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~   68 (162)
                      +..+|.+.-||+++++..-.+.+ -.--..|++++|+..++.+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence            44567788899888765333332 2345789999999977665

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=84.06  E-value=14  Score=29.04  Aligned_cols=61  Identities=16%  Similarity=0.151  Sum_probs=41.2

Q ss_pred             CCCcEEEEECCCCeeeeeccCCC--------CCE--EEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEee
Q psy12456         28 SDSQVQIWDLKKQKNVTDFQLDA--------GPI--QALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        28 ~dg~i~~wd~~~~~~~~~~~~~~--------~~v--~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      .+|.+.-.|+++++.+-+.....        .+.  ..++.  .+..++.++.|+.+..+|.++.+.+-+++.
T Consensus       364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            35778888888888776655321        111  11222  456888899999999999988876655554

The alignment model contains an 8-bladed beta-propeller.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.90  E-value=4.4  Score=32.02  Aligned_cols=62  Identities=15%  Similarity=0.260  Sum_probs=43.0

Q ss_pred             CCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456         17 HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus        17 ~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      ...| ++|+++..|-||+||--......-+++-...|..|....+|.+++..+. .++-+-|++
T Consensus       571 TesG-yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         571 TESG-YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             ccCc-eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            3344 8899999999999994322223335555678999999999988776554 456666653

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=83.53  E-value=13  Score=26.01  Aligned_cols=73  Identities=16%  Similarity=0.248  Sum_probs=40.3

Q ss_pred             CCcEEEEeeCC--CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEE-EEEeCCCeEEEEEcccCcceeEEeeC
Q psy12456         19 DGLIFGIGTSD--SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYL-ATAADENCVKLWDLRKLKNFKTLQLD   91 (162)
Q Consensus        19 ~g~~~a~g~~d--g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~d~~v~~wd~~~~~~~~~~~~~   91 (162)
                      +|.++.+.+.-  ..|++||+++++.+.+-+.....+..--+-.-+.++ ...=.++.-..||.++.+....+..+
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~  130 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE  130 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC
Confidence            45666665553  358999999988876655431122221111112222 22234566677888877777666543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=83.39  E-value=19  Score=27.84  Aligned_cols=42  Identities=14%  Similarity=0.071  Sum_probs=33.6

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEee
Q psy12456         49 DAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        49 ~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      ....+.+|+.+|.+++.++.+.=|.|.++|+.+...++.++.
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG  347 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG  347 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence            335588999999999999888889999999987666665554

>KOG1898|consensus

Probab=83.00  E-value=26  Score=30.39  Aligned_cols=105  Identities=15%  Similarity=0.136  Sum_probs=59.1

Q ss_pred             EEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCC--CCEEEEEEccCCCEEEEEeCCCeEEEEEcccC-cceeEEee
Q psy12456         14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA--GPIQALSFSENGYYLATAADENCVKLWDLRKL-KNFKTLQL   90 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~-~~~~~~~~   90 (162)
                      .+..|...++.+| ....+++||+-++++++..+...  ..|+.+++  .+..++.|...-.+.++-.+.. +.+..+..
T Consensus       939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen  939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred             eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence            4567755555444 45789999998888776665432  34666665  5667888877666766555432 22222222


Q ss_pred             CCC-CCeeEEEECCCCCEEEEecccEEEEEeCC
Q psy12456         91 DPN-YEIRDLCFDQSGTYMAVAGTDVRVFLCKQ  122 (162)
Q Consensus        91 ~~~-~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  122 (162)
                      .+. --++++++- +...++.+..=.++|..+.
T Consensus      1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred             CCccceeeEEEEe-cCCceeeccccCcEEEEEC
Confidence            211 124554443 3344555544466666544

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=82.72  E-value=17  Score=26.87  Aligned_cols=77  Identities=16%  Similarity=0.140  Sum_probs=52.0

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCC--CCCEEEEEEcc------CCCEEEEEeCCCeEEEEEcccC
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLD--AGPIQALSFSE------NGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~i~~~~------~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      |+.+.-.+++.-=..|-.-|.|-+||++ +..++.+...  ...-..|+..|      .+.+|+---.||+|..||..+.
T Consensus       203 VtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG  281 (336)
T TIGR03118       203 VTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG  281 (336)
T ss_pred             EEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence            5666666766666666677899999974 6777777422  12334667655      4667776678999999998765


Q ss_pred             cceeEE
Q psy12456         83 KNFKTL   88 (162)
Q Consensus        83 ~~~~~~   88 (162)
                      +.+..+
T Consensus       282 ~~~g~L  287 (336)
T TIGR03118       282 AQLGQL  287 (336)
T ss_pred             ceeeee
Confidence            544443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=81.21  E-value=22  Score=27.24  Aligned_cols=104  Identities=11%  Similarity=0.106  Sum_probs=56.8

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCce-----EEE
Q psy12456         53 IQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQ-----ELA  127 (162)
Q Consensus        53 v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~  127 (162)
                      ...+..++++.+++.+..-..++-||-... .-..........+..+.+.+++.+++++.....++.....+     .+.
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~-~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~  319 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP-YWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFE  319 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCc-ceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCccccccee
Confidence            344566778777776665444444554210 00112222344578889999998887775544444332222     222


Q ss_pred             Eeec--CcccEEEEEECCCCceEEEeecCCeEE
Q psy12456        128 MFNE--HTAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus       128 ~~~~--h~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      ....  -...+.++.|.++++.+++| .+|.+.
T Consensus       320 ~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~  351 (398)
T PLN00033        320 EADIKSRGFGILDVGYRSKKEAWAAG-GSGILL  351 (398)
T ss_pred             ecccCCCCcceEEEEEcCCCcEEEEE-CCCcEE
Confidence            2221  12348889998888776654 555544

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=81.18  E-value=31  Score=28.91  Aligned_cols=138  Identities=9%  Similarity=0.150  Sum_probs=78.4

Q ss_pred             CCCCcEEEEEeC---C----CCcEEEEeeCCCcEEEEECC------C---------CeeeeeccCC---CCCEEEEEEcc
Q psy12456          6 AGGPTLTTAQLH---P----DGLIFGIGTSDSQVQIWDLK------K---------QKNVTDFQLD---AGPIQALSFSE   60 (162)
Q Consensus         6 ~~~~~v~~~~~~---~----~g~~~a~g~~dg~i~~wd~~------~---------~~~~~~~~~~---~~~v~~i~~~~   60 (162)
                      ..+.+|..+.|.   .    ...+|++=.. ..+.|+...      .         ..++..+..+   ..+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEcC-CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            357788888888   2    2346666554 456666611      1         0234444422   34677899998


Q ss_pred             -CCCEEEEEeCCCeEEEEEcccCc--ceeEEee--CC----------CCCeeEEEECCCCCEEEEeccc-EEEEEeCCce
Q psy12456         61 -NGYYLATAADENCVKLWDLRKLK--NFKTLQL--DP----------NYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQ  124 (162)
Q Consensus        61 -~~~~l~s~~~d~~v~~wd~~~~~--~~~~~~~--~~----------~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~  124 (162)
                       +...||..+..|...+||+....  ....+..  ..          ...-..++|.++-..+++++.. +.++++....
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~  235 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW  235 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence             56799999999999999992111  1011110  00          1123467888887777776654 6666665432


Q ss_pred             EEE--EeecCcccEEEEEECCC
Q psy12456        125 ELA--MFNEHTAMVTGVRFGTH  144 (162)
Q Consensus       125 ~~~--~~~~h~~~v~~~~~s~~  144 (162)
                      ...  ........|..++-+|.
T Consensus       236 ~~~~l~~~~~~~~IlDv~~~~~  257 (765)
T PF10214_consen  236 QTEYLVTAKTWSWILDVKRSPD  257 (765)
T ss_pred             ccchhccCCChhheeeEEecCC
Confidence            211  11223345666666655

These proteins are found in fungi.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=80.69  E-value=19  Score=30.29  Aligned_cols=67  Identities=19%  Similarity=0.227  Sum_probs=36.7

Q ss_pred             EEEEccCCCEEEEEeCCC-----eEEEEEcccCcce-eEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeC
Q psy12456         55 ALSFSENGYYLATAADEN-----CVKLWDLRKLKNF-KTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCK  121 (162)
Q Consensus        55 ~i~~~~~~~~l~s~~~d~-----~v~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~  121 (162)
                      -++|-|.|..+++-..|+     .|.++.-...++- ...+.........++|+.....++.+-.+ +++|..+
T Consensus       251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttk  324 (1243)
T COG5290         251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTK  324 (1243)
T ss_pred             ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEcc
Confidence            478999999999987655     3555543221110 00111112234556777666666665444 6676543

>PHA03098 kelch-like protein; Provisional

Probab=80.12  E-value=28  Score=27.59  Aligned_cols=62  Identities=18%  Similarity=0.177  Sum_probs=34.7

Q ss_pred             CCCcEEEEeeCCC------cEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEccc
Q psy12456         18 PDGLIFGIGTSDS------QVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAADE-----NCVKLWDLRK   81 (162)
Q Consensus        18 ~~g~~~a~g~~dg------~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-----~~v~~wd~~~   81 (162)
                      .++.+++.|+.++      .+..||..+++....  +.........+++  ++..++.|+.+     ..+..||..+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~  367 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGE  367 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCC
Confidence            4567788887653      467888877654321  1111122222233  56677777765     2466777754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	162
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-10
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-08
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		7e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		7e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		7e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		8e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-08
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		8e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		8e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		8e-08
2h9l_A	329	Wdr5delta23 Length = 329		9e-08
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-07
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-07
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		9e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-06
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-06
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-06
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-06
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-06
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		3e-06
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		4e-06
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-06
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-06
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		6e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-05
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-05
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		2e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-05
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		8e-05
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		8e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		6e-04
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		7e-04
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		7e-04
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		7e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 8/146 (5%)
Query: 18  PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW 77
           PDG      + D  V++W+   Q ++      +  +  ++FS +G  +A+A+D+  VKLW
Sbjct: 313 PDGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371
Query: 78  DLRKLKNFKTLQLDPNYE--IRDLCFDQSGTYMAVAGTDVRVFLC-KQWQELAMFNEHTA 134
           +    +N + LQ    +   +R + F   G  +A A  D  V L  +  Q L     H++
Sbjct: 372 N----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 427
Query: 135 MVTGVRFGTHAHYLASSSMDRTLKLY 160
            V GV F      +AS+S D+T+KL+
Sbjct: 428 SVWGVAFSPDDQTIASASDDKTVKLW 453

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 18  PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW 77
           PDG     G  D  ++IWD++ +K V   Q     I +L +  +G  L + + +  V++W
Sbjct: 133 PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
Query: 78  DLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW---QELAMFNE- 131
           DLR  +   TL ++       +     G Y+A    D  VRV+  +     + L   NE 
Sbjct: 193 DLRTGQCSLTLSIEDGVTTVAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 251
Query: 132 ---HTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
              H   V  V F      + S S+DR++KL++L
Sbjct: 252 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 29  VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 85
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 86  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 88
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 89  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 88
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 89  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 88
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 89  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 146
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 31  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 87
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 88  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 145
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 48  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 104
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 105 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 162
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 25  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 81
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 82  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 139
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 82
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 83  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 27  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 83
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 84  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 141
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 50  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 106
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 107 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 164
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 22  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 78
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 79  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 136
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 85
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 86  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 82
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 83  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 140
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 85
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 86  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 143
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 43  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 99
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K  +
Sbjct: 100 ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGK 157
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 85
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K   
Sbjct: 86  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIW---DLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           +++ +  P+G      ++D  ++IW   D K +K ++  +L    I  +++S +   L +
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVS 85
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCKQWQ 124
           A+D+  +K+WD+   K  KTL+   NY     C     + + V+G+    VR++  K   
Sbjct: 86  ASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIWDVKTGM 143
Query: 125 ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            L     H+  V+ V F      + SSS D   +++
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
           ++T  + PDG +   G  D  V +WDL + K +   + ++  I AL FS N Y+L  AA 
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPNRYWLC-AAT 621
Query: 71  ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLC 120
           E+ +K+WDL      + L++D   E      D SG     A T  +V  C
Sbjct: 622 EHGIKIWDLESKSIVEDLKVDLKAEAEKA--DNSGP----AATKRKVIYC 665

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 5/157 (3%)
Query: 6   AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYL 65
           +  P      + PD  +     SD  + +WDL  Q  V  FQ        +  S +G  L
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 66  ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVA--GTDVRVFLCKQW 123
            T   +N V+ WDLR+ +  +  Q D   +I  L +  +G ++AV    ++V V    + 
Sbjct: 199 WTGGLDNTVRSWDLREGRQLQ--QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK- 255
Query: 124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
            +    + H + V  ++F     +  S+  D  L  +
Sbjct: 256 PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP-IQALSFSENGYYLATAA 69
           L T  + PDG +   G  D Q  +WDL + K++  + LD G  I AL FS N Y+L  AA
Sbjct: 218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLDGGDIINALCFSPNRYWLC-AA 274
Query: 70  DENCVKLWDLR 80
               +K+WDL 
Sbjct: 275 TGPSIKIWDLE 285

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 11  LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP-IQALSFSENGYYLATAA 69
           L T  + PDG +   G  D Q  +WDL + K++  + LD G  I AL FS N Y+L  AA
Sbjct: 195 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLDGGDIINALCFSPNRYWLC-AA 251
Query: 70  DENCVKLWDLR 80
               +K+WDL 
Sbjct: 252 TGPSIKIWDLE 262

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 29  DSQVQIWDLKKQKNVTDFQLDAGPIQA--LSFSENGYYLATAADENCVKLWDLRKLKNFK 86
           D+ +++WDL+  K +    +DAGP+ A  L+FS +  YLAT      V ++ +   K   
Sbjct: 101 DAHIRLWDLENGKQIK--SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158
Query: 87  TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTH 144
           +L     + I  + +   G Y+A    D  + +F     + L     H   +  + F   
Sbjct: 159 SLDTRGKF-ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 145 AHYLASSSMDRTLKLYSL 162
           +  L ++S D  +K+Y +
Sbjct: 218 SQLLVTASDDGYIKIYDV 235

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
           L PD  +F  G  D+  ++WD+++      F      I A+ F  NG   AT +D+   +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 76  LWDLRKLKNFKTLQLDPNY-EIRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-----AMF 129
           L+DLR  +   T   D     I  + F +SG  + +AG D   F C  W  L      + 
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYD--DFNCNVWDALKADRAGVL 308
Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
             H   V+ +        +A+ S D  LK+++
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
           L PD  +F  G  D+  ++WD+++      F      I A+ F  NG   AT +D+   +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 76  LWDLRKLKNFKTLQLDPNY-EIRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-----AMF 129
           L+DLR  +   T   D     I  + F +SG  + +AG D   F C  W  L      + 
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYD--DFNCNVWDALKADRAGVL 308
Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
             H   V+ +        +A+ S D  LK+++
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
           L PD  +F  G  D+  ++WD+++      F      I A+ F  NG   AT +D+   +
Sbjct: 203 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Query: 76  LWDLRKLKNFKTLQLDPNY-EIRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-----AMF 129
           L+DLR  +   T   D     I  + F +SG  + +AG D   F C  W  L      + 
Sbjct: 263 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYD--DFNCNVWDALKADRAGVL 319
Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
             H   V+ +        +A+ S D  LK+++
Sbjct: 320 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
           L PD  +F  G  D+  ++WD+++      F      I A+ F  NG   AT +D+   +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 76  LWDLRKLKNFKTLQLDPNY-EIRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-----AMF 129
           L+DLR  +   T   D     I  + F +SG  + +AG D   F C  W  L      + 
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYD--DFNCNVWDALKADRAGVL 308
Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
             H   V+ +        +A+ S D  LK+++
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)
Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
           L PD  +F  G  D+  ++WD+++      F      I A+ F  NG   AT +D+   +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 76  LWDLRKLKNFKTLQLDPNY-EIRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-----AMF 129
           L+DLR  +   T   D     I  + F +SG  + +AG D   F C  W  L      + 
Sbjct: 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLL-LAGYD--DFNCNVWDALKADRAGVL 308
Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS 161
             H   V+ +        +A+ S D  LK+++
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 4   SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY 63
           SG   P +T    HP   +    + D+ +++WD +        +     +Q +SF  +G 
Sbjct: 105 SGHRSP-VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 64  YLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW 123
            LA+ + +  +KLWD +  +  +T+    ++ +  +    +G ++  A  D  +   K W
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTI---KMW 219
Query: 124 QE-----LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
           +      +  F  H   V  VR       +AS S D+T++++
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 11/154 (7%)
Query: 17  HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG---PIQALSFSENGYYLATAADENC 73
           +P G +      D +++IW  +    +    L  G    ++ +++S  G YLA+A+ +  
Sbjct: 25  NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84
Query: 74  VKLWDLRK--LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK-----QWQEL 126
             +W   +   +   TL+   N E++ + +  SG  +A    D  V++ +     +++ +
Sbjct: 85  TCIWKKNQDDFECVTTLEGHEN-EVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143
Query: 127 AMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
           ++ N HT  V  V +      LAS+S D T+KLY
Sbjct: 144 SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 19  DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
           +G    +GTS ++VQ+WD+++QK + +    +  + +LS+  N Y L++ +    +   D
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 215
Query: 79  LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ------WQELAMFNEH 132
           +R  ++        + E+  L +   G ++A  G D  V +         W  L  F +H
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 275
Query: 133 TAMVTGVRFGT-HAHYLAS--SSMDRTLKLYSL 162
              V  V +    ++ LA+   + DR ++++++
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 19  DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
           +G    +GTS ++VQ+WD+++QK + +    +  + +LS+  N Y L++ +    +   D
Sbjct: 78  EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 135
Query: 79  LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ------WQELAMFNEH 132
           +R  ++        + E+  L +   G ++A  G D  V +         W  L  F +H
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 195
Query: 133 TAMVTGVRFGT-HAHYLAS--SSMDRTLKLYSL 162
              V  V +    ++ LA+   + DR ++++++
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 19  DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
           +G    +GTS ++VQ+WD+++QK + +    +  + +LS+  N Y L++ +    +   D
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 226
Query: 79  LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ------WQELAMFNEH 132
           +R  ++        + E+  L +   G ++A  G D  V +         W  L  F +H
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 286
Query: 133 TAMVTGVRFGT-HAHYLAS--SSMDRTLKLYSL 162
              V  V +    ++ LA+   + DR ++++++
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 31  QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL 90
           +V+IW+ + Q  V   Q+   P++A  F     ++   +D+  +++++    +     + 
Sbjct: 36  RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 91  DPNYEIRDLCFDQSGTYMAVAGTDVRVFLC---KQWQELAMFNEHTAMVTGVRFGTH-AH 146
            P+Y IR +    +  Y+     D+ V L      W     F  H   V  V F      
Sbjct: 96  HPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 147 YLASSSMDRTLKLYSL 162
             AS  +DRT+K++SL
Sbjct: 155 TFASGCLDRTVKVWSL 170

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 31  QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL 90
           +V++W+ + Q  V   Q+   P++A  F     ++   +D+  +++++    +     + 
Sbjct: 36  RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 91  DPNYEIRDLCFDQSGTYMAVAGTDVRVFLC---KQWQELAMFNEHTAMVTGVRFGTH-AH 146
            P+Y IR +    +  Y+     D+ V L      W     F  H   V  V F      
Sbjct: 96  HPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 147 YLASSSMDRTLKLYSL 162
             AS  +DRT+K++SL
Sbjct: 155 TFASGCLDRTVKVWSL 170

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 31  QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL 90
           +V++W+ + Q  V   Q+   P++A  F     ++   +D+  +++++    +     + 
Sbjct: 36  RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 91  DPNYEIRDLCFDQSGTYMAVAGTDVRVFLC---KQWQELAMFNEHTAMVTGVRFGTH-AH 146
            P+Y IR +    +  Y+     D+ V L      W     F  H   V  V F      
Sbjct: 96  HPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 147 YLASSSMDRTLKLYSL 162
             AS  +DRT+K++SL
Sbjct: 155 TFASGCLDRTVKVWSL 170

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 16/114 (14%)
Query: 22  IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSEN-GYYLATAADENCVKLWDLR 80
           +  +GT   +VQ+ DLK        Q     I A+S+S    Y LATA+ ++ VKLWD+R
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 81  ---------------KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL 119
                          K +  ++     N ++  LCF   G ++   GTD R+ L
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 31  QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL 90
           +V++W+ + Q  V   Q+   P++A  F     ++   +D+  +++++    +     + 
Sbjct: 36  RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 91  DPNYEIRDLCFDQSGTYMAVAGTDVRVFLC---KQWQELAMFNEHTAMVTGVRFGTH-AH 146
            P+Y IR +    +  Y+     D+ V L      W     F  H   V  V F      
Sbjct: 96  HPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 147 YLASSSMDRTLKLYSL 162
             AS  +DRT+K++SL
Sbjct: 155 TFASGCLDRTVKVWSL 170

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 19  DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
           D  +   G  D+ V++WDL   + VTD +     + +++ S +G   A++  +   +LWD
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 79  LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVF 118
           L K +     ++     I  +CF  +  +M  A    +R+F
Sbjct: 225 LTKGEALS--EMAAGAPINQICFSPNRYWMCAATEKGIRIF 263

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 19/157 (12%)
Query: 22  IFGIGTSDSQVQIWDLK-KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR 80
           +F  G+ D+ V++WDL+   + V  +    G I ++ F  +G    T +D+   +L+D+R
Sbjct: 220 MFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279
Query: 81  KLKNFKTLQLDPNYE------IRDLCFDQSGTYMAVAGTDVRVFLCKQWQEL-------- 126
                +    +P+        +  + F  SG  +    ++     C  W  L        
Sbjct: 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD---CYVWDTLLAEMVLNL 336
Query: 127 -AMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
             + N H   ++ +   +    L + S D+ LK+++ 
Sbjct: 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 15/93 (16%)
Query: 6   AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP------IQALSFS 59
            G  +LT+     D ++   G +DS V+IWD+K  + +   Q   GP      +  L F+
Sbjct: 316 TGHQSLTSGMELKDNILVS-GNADSTVKIWDIKTGQCLQTLQ---GPNKHQSAVTCLQFN 371
Query: 60  ENGYYLATAADENCVKLWDLRK---LKNFKTLQ 89
           +N  ++ T++D+  VKLWDL+    ++N  TL+
Sbjct: 372 KN--FVITSSDDGTVKLWDLKTGEFIRNLVTLE 402

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 6   AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLD--------AGPIQALS 57
           A    + +    P   +   G+ DS V IW  ++  + T F++D           ++ ++
Sbjct: 56  AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT-FEMDLLAIIEGHENEVKGVA 114
Query: 58  FSENGYYLATAADENCVKLWDL----RKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT 113
           +S +GYYLAT + +  V +W+      + +    LQ + + +++ + +  S   +A +  
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPSEALLASSSY 173
Query: 114 DVRVFLCK----QWQELAMFNEHTAMVTGVRFGTH--AHYLASSSMDRTLKLY 160
           D  V + K     W+ +A+ N H   V    F        L S S D T++++
Sbjct: 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 9/150 (6%)
Query: 19  DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
           DG       +D  +Q++  +  + + D +     +   +FS +  Y+AT + +  VK+WD
Sbjct: 633 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 692
Query: 79  LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQ------ELAMFNEH 132
               K   T   D + E  + C   + +   +  T    F  K W          MF  H
Sbjct: 693 SATGKLVHT--YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-H 749
Query: 133 TAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           T  V   RF      LAS S D TL+L+ +
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDV 779

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 9/150 (6%)
Query: 19  DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD 78
           DG       +D  +Q++  +  + + D +     +   +FS +  Y+AT + +  VK+WD
Sbjct: 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685
Query: 79  LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQ------ELAMFNEH 132
               K   T   D + E  + C   + +   +  T    F  K W          MF  H
Sbjct: 686 SATGKLVHT--YDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-H 742
Query: 133 TAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           T  V   RF      LAS S D TL+L+ +
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDV 772

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 9   PTLTTA-QLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           P + +A ++ P    F     D ++++W+   Q   T F+     +  LS S NG Y+AT
Sbjct: 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYT-FKAHESNVNHLSISPNGKYIAT 230
Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVF 118
              +  + +WD+  L  +   + D    I  + F+    ++AV GTD  V++F
Sbjct: 231 GGKDKKLLIWDILNL-TYPQREFDAGSTINQIAFNPKLQWVAV-GTDQGVKIF 281

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 15/157 (9%)
Query: 18  PDGLIFGIGTSDSQVQIWDLKKQKNVT------DFQLDAGPIQALSFSENGYYLATAADE 71
           P G     G  D++  ++ L   KN           +    + A SF+ +   + TA+ +
Sbjct: 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD 175
Query: 72  NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFD----QSGTYMAVAGTDVR--VFLCKQWQE 125
               LWD+   ++ + LQ    +    LC D    ++G      G D +  V+  +  Q 
Sbjct: 176 GTCALWDV---ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC 232
Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           +  F  H + V  VR+       AS S D T +LY L
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 33  QIWDLK-KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL--Q 89
           ++W+L+  +K VT   L+             ++LATA+ +  VK+WDLR+++   +    
Sbjct: 242 ELWNLRMHKKKVTHVALNPC---------CDWFLATASVDQTVKIWDLRQVRGKASFLYS 292
Query: 90  LDPNYEIRDLCFDQSGTYMAVA--GTDVRVFLCKQWQ-ELAMF---NEHTAMVTGVRFGT 143
           L   + +   CF   G  +      +++RV+   QW   L +    + H   +T ++   
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352
Query: 144 HAHY 147
           H  Y
Sbjct: 353 HPRY 356

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 33  QIWDLK-KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL--Q 89
           ++W+L+  +K VT   L+             ++LATA+ +  VK+WDLR+++   +    
Sbjct: 243 ELWNLRMHKKKVTHVALNPC---------CDWFLATASVDQTVKIWDLRQVRGKASFLYS 293
Query: 90  LDPNYEIRDLCFDQSGTYMAVA--GTDVRVFLCKQWQ-ELAMF---NEHTAMVTGVRFGT 143
           L   + +   CF   G  +      +++RV+   QW   L +    + H   +T ++   
Sbjct: 294 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 353
Query: 144 HAHY 147
           H  Y
Sbjct: 354 HPRY 357

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 33  QIWDLK-KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL--Q 89
           ++W+L+  +K VT   L+             ++LATA+ +  VK+WDLR+++   +    
Sbjct: 242 ELWNLRMHKKKVTHVALNPC---------CDWFLATASVDQTVKIWDLRQVRGKASFLYS 292
Query: 90  LDPNYEIRDLCFDQSGTYMAVA--GTDVRVFLCKQWQ-ELAMF---NEHTAMVTGVRFGT 143
           L   + +   CF   G  +      +++RV+   QW   L +    + H   +T ++   
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352
Query: 144 HAHY 147
           H  Y
Sbjct: 353 HPRY 356

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	162
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.98
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.98
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.96
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.96
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.94
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.92
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.91
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.91
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.88
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.82
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.81
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.8
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.78
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.78
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.78
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.78
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.77
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.76
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.76
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.76
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.76
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.76
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.75
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.74
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.73
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.73
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.73
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.72
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.72
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.71
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.71
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.7
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.7
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.69
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.67
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.66
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.65
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.64
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.64
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.61
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.61
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.57
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.56
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.55
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.54
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.53
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.51
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.5
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.49
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.47
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.46
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.44
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.42
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.36
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.36
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.35
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.35
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.34
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.31
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.29
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.29
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.28
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.28
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.28
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.27
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.25
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.24
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.24
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.19
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.19
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.18
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.17
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.16
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.15
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.13
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.11
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.09
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.09
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.08
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.08
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.06
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.03
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.02
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.02
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.02
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.01
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.97
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.96
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.93
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.92
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.89
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.87
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.85
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.7
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.68
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.67
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.55
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.49
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.49
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.44
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.42
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.4
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.39
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.36
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.32
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.31
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.31
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.27
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.23
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.22
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.15
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.14
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.13
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.12
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.12
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.09
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.07
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.96
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.91
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.88
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.84
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.79
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.77
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.66
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.65
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.63
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.6
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.6
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.59
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.57
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.52
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.5
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.47
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.39
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.38
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.36
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.33
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.31
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.31
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.27
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.24
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.22
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.22
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.2
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.19
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.17
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.11
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.11
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.1
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.1
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.1
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.09
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.05
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.05
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.04
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.99
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.97
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.93
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.92
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.55
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.54
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.51
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.5
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.39
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.38
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.38
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.33
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.21
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.14
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.09
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.01
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.97
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.72
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.56
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.39
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.12
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.5
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.45
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.39
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.18
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.03
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.93
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	93.72
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.52
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.53
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.12
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	91.74
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.92
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.87
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	90.76
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.24
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.96
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.52
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	88.24
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.94
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	87.21
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.56
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.28
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	86.01
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	85.84
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	85.74
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	85.57
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	85.54
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	85.21
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.03
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	84.9
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	84.61
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	84.43
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	84.34
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	84.04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	83.09
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	82.09
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	81.49

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=202.97  Aligned_cols=156  Identities=23%  Similarity=0.379  Sum_probs=144.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .++..|++++|+|+|+++|+|+.||.|++||+++++.+..++.|..+|.+++|+|++++|++++.|++|++||+++.+..
T Consensus       162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~  241 (321)
T 3ow8_A          162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA  241 (321)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred             CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence            35567999999999999999999999999999999999999999999999999999999999999999999999987776


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+..+ ...|.+++|+|++.++++++.|  +++|+..+.+.+..+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus       242 ~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          242 GTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            666654 4579999999999999999987  889998888999999999999999999999999999999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.7e-33  Score=200.31  Aligned_cols=156  Identities=19%  Similarity=0.334  Sum_probs=142.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|++++|+|+++++++|+.||+|++||+++++.+..+..|..+|.+++|+|++++|++|+.|++|++||+++.+.+
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~   90 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV   90 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEE
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc-eEEEEeecCcccEEEEEECC-CCceEEEeecCCeEEEee
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW-QELAMFNEHTAMVTGVRFGT-HAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iw~  161 (162)
                      ..+..| ...|.+++|+|++.++++++.|  +++|+.... .....+.+|...|.+++|+| ++..|++++.|++|++||
T Consensus        91 ~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd  169 (304)
T 2ynn_A           91 VDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS  169 (304)
T ss_dssp             EEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred             EEEeCC-CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            777764 4579999999999999999988  788887655 55667899999999999999 678999999999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       170 ~  170 (304)
T 2ynn_A          170 L  170 (304)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.9e-33  Score=200.95  Aligned_cols=156  Identities=23%  Similarity=0.362  Sum_probs=141.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|++++|+|+++++++|+.||.|++||+++++.+..+..|..+|.+++|+|++++|++|+.|++|++||+++.+.+
T Consensus       182 ~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~  261 (340)
T 1got_B          182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999876665


Q ss_pred             eEEeeC-CCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 KTLQLD-PNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..+... ....+.+++|+|++.++++|+.|  +++|+....+.+..+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus       262 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            554422 22468999999999999999987  77888777888888999999999999999999999999999999997

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.6e-33  Score=200.99  Aligned_cols=157  Identities=21%  Similarity=0.330  Sum_probs=136.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCC-CEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENG-YYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .|...|++++|+|+|++|++|+.||+|++||+++++.+..+.+|..+|.+++|+|++ .+|++++.|++|++||+++.+.
T Consensus       125 ~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~  204 (344)
T 4gqb_B          125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP  204 (344)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce
Confidence            467789999999999999999999999999999999999999999999999999987 5789999999999999998776


Q ss_pred             eeEEee-CCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCC-ceEEEeecCCeEEE
Q psy12456         85 FKTLQL-DPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHA-HYLASSSMDRTLKL  159 (162)
Q Consensus        85 ~~~~~~-~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~i  159 (162)
                      ...+.. .+...+.+++|+|+ +.++++|+.|  +++|+.+..+.+..+.+|...|.+++|+|++ ++|++++.|++|++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~v  284 (344)
T 4gqb_B          205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV  284 (344)
T ss_dssp             EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred             eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence            665432 23446889999985 6788888877  7888888888889999999999999999997 58999999999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus       285 wd~  287 (344)
T 4gqb_B          285 LDS  287 (344)
T ss_dssp             ECT
T ss_pred             EEC
Confidence            985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1e-31  Score=192.09  Aligned_cols=157  Identities=19%  Similarity=0.278  Sum_probs=140.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-eeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-KNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .|...|++++|+|+++++++|+.||+|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|++|++||++..+
T Consensus        95 ~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~  174 (304)
T 2ynn_A           95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST  174 (304)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            46778999999999999999999999999999887 55677889999999999999 67899999999999999998766


Q ss_pred             ceeEEeeCCCCCeeEEEECC--CCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQ--SGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      ....+..++...+..++|+|  ++.++++++.|  +++|+....+.+..+.+|...|..++|+|++++|++++.|++|++
T Consensus       175 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~i  254 (304)
T 2ynn_A          175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI  254 (304)
T ss_dssp             CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEE
Confidence            65555555556788899986  67899999988  888988888899999999999999999999999999999999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus       255 Wd~  257 (304)
T 2ynn_A          255 WNS  257 (304)
T ss_dssp             EET
T ss_pred             EEC
Confidence            985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.4e-32  Score=202.80  Aligned_cols=156  Identities=19%  Similarity=0.371  Sum_probs=144.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .|..+|++++|+|++.++++|+.||+|++||+.+++.+..+++|..+|.+++|+|++++|++|+.|++|++||+.+.+.+
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~  185 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI  185 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence            36678999999999999999999999999999999999999999999999999999999999999999999999887777


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+..| ...|.+++|+|++.++++++.|  +++|+......+..+.+|...|..+.|+|+++++++++.|++|++||+
T Consensus       186 ~~~~~h-~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~  263 (410)
T 1vyh_C          186 RTMHGH-DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV  263 (410)
T ss_dssp             ECCCCC-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEcCC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            666554 4579999999999999999988  788888888888999999999999999999999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=193.62  Aligned_cols=156  Identities=23%  Similarity=0.373  Sum_probs=143.0

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...+.+++|+|+++++++|+.||.+++||+++++....+..|...|.+++|+|++++|++|+.|+.|++||+++.+.+
T Consensus       120 ~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~  199 (321)
T 3ow8_A          120 AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL  199 (321)
T ss_dssp             CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence            34556788999999999999999999999999999999999989899999999999999999999999999999988777


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+.. +..+|.+++|+|+++++++++.|  +++|+....+.+..+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus       200 ~~~~~-h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~  277 (321)
T 3ow8_A          200 HTLEG-HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV  277 (321)
T ss_dssp             EEECC-CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEcc-cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            77665 44579999999999999999987  888988888888889999999999999999999999999999999985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.5e-31  Score=188.78  Aligned_cols=156  Identities=21%  Similarity=0.338  Sum_probs=144.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .|...|++++|+|+|+++++|+.||.|++||+.+++....+..|..+|.+++|+|++++|++++.|+.|++||+++.+.+
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~  100 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL  100 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+..+ ...+.+++|+|++.++++++.|  +++|+.+..+.+..+..|..+|.++.|+|+++++++++.|+.|++||+
T Consensus       101 ~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~  178 (312)
T 4ery_A          101 KTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT  178 (312)
T ss_dssp             EEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEcCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence            777654 4579999999999999999887  788888888888889999999999999999999999999999999985

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.2e-31  Score=193.37  Aligned_cols=156  Identities=20%  Similarity=0.384  Sum_probs=139.9

Q ss_pred             CCCCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+...|++++++|  +|++|++|+.||+|++||+++++++..+..|..+|.+++|+|++.+|++++.|++|++||+++.+
T Consensus       194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~  273 (354)
T 2pbi_B          194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR  273 (354)
T ss_dssp             CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            4567899999988  57899999999999999999999999999999999999999999999999999999999998766


Q ss_pred             ceeEEeeC-CCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         84 NFKTLQLD-PNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        84 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      .+..+..+ ....+.+++|+|++.++++++.|  +++|+....+.+..+.+|...|++++|+|++++|++|+.|++|++|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          274 EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence            55554432 23468899999999999999877  8888887888888899999999999999999999999999999999


Q ss_pred             e
Q psy12456        161 S  161 (162)
Q Consensus       161 ~  161 (162)
                      +
T Consensus       354 ~  354 (354)
T 2pbi_B          354 A  354 (354)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.3e-31  Score=188.88  Aligned_cols=155  Identities=17%  Similarity=0.290  Sum_probs=139.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .|...|++++|+|+|+++++|+.|++|++||+++++.+..+.+|..+|.+++|+|++.+|++|+.|++|++||++. +.+
T Consensus        63 ~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~  141 (319)
T 3frx_A           63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCL  141 (319)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEE
T ss_pred             CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeE
Confidence            4678899999999999999999999999999999999999999999999999999999999999999999999974 444


Q ss_pred             eEEeeCCCCCeeEEEECCCC------CEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeE
Q psy12456         86 KTLQLDPNYEIRDLCFDQSG------TYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~------~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      ..+.. +...+.++.+.|..      .++++++.|  +++|+....+....+.+|...|.+++|+|++++|++++.|++|
T Consensus       142 ~~~~~-h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i  220 (319)
T 3frx_A          142 ATLLG-HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI  220 (319)
T ss_dssp             EEECC-CSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             EEEec-cCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence            45544 44579999999854      488898887  8889888888888899999999999999999999999999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      ++||+
T Consensus       221 ~iwd~  225 (319)
T 3frx_A          221 MLWNL  225 (319)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.7e-31  Score=190.32  Aligned_cols=155  Identities=20%  Similarity=0.358  Sum_probs=135.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC--eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ--KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+...|++++|+|+|++||+|+.|+++++||++++  +.+..+.+|..+|.+++|+|++++|++++.|++|++||++...
T Consensus        59 ~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~  138 (345)
T 3fm0_A           59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED  138 (345)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred             ccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence            46778999999999999999999999999999876  4577889999999999999999999999999999999997654


Q ss_pred             c---eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCce--EEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         84 N---FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ--ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        84 ~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      .   +..+.. +...|.+++|+|++.++++++.|  +++|+....+  ....+.+|...|.+++|+|++++|++++.|++
T Consensus       139 ~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          139 EYECVSVLNS-HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             CEEEEEEECC-CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CeEEEEEecC-cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence            3   233333 45579999999999999999987  7888766543  45678899999999999999999999999999


Q ss_pred             EEEee
Q psy12456        157 LKLYS  161 (162)
Q Consensus       157 i~iw~  161 (162)
                      |++|+
T Consensus       218 v~iW~  222 (345)
T 3fm0_A          218 VRIWR  222 (345)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99997

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.4e-31  Score=189.10  Aligned_cols=156  Identities=22%  Similarity=0.393  Sum_probs=129.8

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC-------CeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK-------QKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD   78 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd   78 (162)
                      .|...|++++|+|++++||+|+.|++|+|||++.       .+.+..+.+|..+|.+++|+|++++|++|+.|++|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            3778999999999999999999999999999853       356677889999999999999999999999999999999


Q ss_pred             cccC----cceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc--eEEEEeecCcccEEEEEECCC--CceE
Q psy12456         79 LRKL----KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW--QELAMFNEHTAMVTGVRFGTH--AHYL  148 (162)
Q Consensus        79 ~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~--~~~~~~~~h~~~v~~~~~s~~--~~~l  148 (162)
                      ++..    +.+..+.. +...|.+++|+|++.+|++++.|  +++|+....  +.+..+.+|...|.+++|+|+  +..+
T Consensus       136 ~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  214 (330)
T 2hes_X          136 TDESGEEYECISVLQE-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL  214 (330)
T ss_dssp             CCTTCCCCEEEEEECC-CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEE
T ss_pred             ccCCCCCeEEEEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEE
Confidence            9532    22334443 45579999999999999999987  788876543  677889999999999999998  6789


Q ss_pred             EEeecCCeEEEeeC
Q psy12456        149 ASSSMDRTLKLYSL  162 (162)
Q Consensus       149 ~s~s~D~~i~iw~~  162 (162)
                      ++++.|++|++||+
T Consensus       215 ~s~s~D~~v~iw~~  228 (330)
T 2hes_X          215 CSGSDDSTVRVWKY  228 (330)
T ss_dssp             EEEETTSCEEEEEE
T ss_pred             EEEeCCCeEEEEEe
Confidence            99999999999984

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.4e-31  Score=194.68  Aligned_cols=157  Identities=18%  Similarity=0.402  Sum_probs=136.7

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECC-CCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLK-KQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+...|.++.++| +++++++|+.||+|++||++ .++.+..+.+|.++|.+++|+|++++|++|+.|++|++||+++.+
T Consensus       203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence            4667899999987 89999999999999999998 457788899999999999999999999999999999999999877


Q ss_pred             ceeEEeeCCC------CCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe----ecCcccEEEEEECCCCceEEEe
Q psy12456         84 NFKTLQLDPN------YEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF----NEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        84 ~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      .+..+..+..      ..+.+++|+|++.++++|+.+  +++|+....+.+..+    .+|...|.+++|+|++++|++|
T Consensus       283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg  362 (380)
T 3iz6_a          283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG  362 (380)
T ss_dssp             EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred             EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence            6665543321      237899999999999999887  777877666666555    6899999999999999999999


Q ss_pred             ecCCeEEEeeC
Q psy12456        152 SMDRTLKLYSL  162 (162)
Q Consensus       152 s~D~~i~iw~~  162 (162)
                      +.|++|++|++
T Consensus       363 s~D~~i~iW~~  373 (380)
T 3iz6_a          363 SWDKNLKIWAF  373 (380)
T ss_dssp             CTTSCEEEEEC
T ss_pred             eCCCCEEEEec
Confidence            99999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-30  Score=188.40  Aligned_cols=155  Identities=17%  Similarity=0.302  Sum_probs=134.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .|...|++++|+|++.++++|+.|++|++||+++++.+..+.+|..+|.+++|+|++++|++++.|++|++||+..... 
T Consensus        74 ~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~-  152 (343)
T 2xzm_R           74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK-  152 (343)
T ss_dssp             CCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE-
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce-
Confidence            4667899999999999999999999999999999999999999999999999999999999999999999999974221 


Q ss_pred             eEEe--eCCCCCeeEEEECCCC----------CEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEe
Q psy12456         86 KTLQ--LDPNYEIRDLCFDQSG----------TYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        86 ~~~~--~~~~~~v~~~~~~~~~----------~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      ....  ..+...+.+++|+|++          .++++++.|  +++|+ ...+....+.+|...|.+++|+|++++|+++
T Consensus       153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sg  231 (343)
T 2xzm_R          153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATG  231 (343)
T ss_dssp             EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEE
Confidence            1111  1244569999999987          789999887  66776 3456667789999999999999999999999


Q ss_pred             ecCCeEEEeeC
Q psy12456        152 SMDRTLKLYSL  162 (162)
Q Consensus       152 s~D~~i~iw~~  162 (162)
                      +.|+.|++||+
T Consensus       232 s~dg~v~iwd~  242 (343)
T 2xzm_R          232 GKDKKLLIWDI  242 (343)
T ss_dssp             ETTCEEEEEES
T ss_pred             cCCCeEEEEEC
Confidence            99999999985

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.1e-30  Score=190.31  Aligned_cols=152  Identities=26%  Similarity=0.449  Sum_probs=136.2

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ..|++++|+|+|++||+|+.||.|++||+++++.+..+.+|..+|.+++|+|++.+|++++.|++|++||+++.+....+
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999887765555


Q ss_pred             eeCCCCCeeEEEECC-CCCEEEEeccc--EEEEEeCCceEEEEe-------ecCcccEEEEEECCCCceEEEeecCCeEE
Q psy12456         89 QLDPNYEIRDLCFDQ-SGTYMAVAGTD--VRVFLCKQWQELAMF-------NEHTAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~-~~~~~~~~~~~--~~i~~~~~~~~~~~~-------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      ..  ...+.+++|+| ++.++++++.|  +++|+......+..+       .+|...|.+++|+|++++|++++.|++|+
T Consensus       204 ~~--~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~  281 (393)
T 1erj_A          204 SI--EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK  281 (393)
T ss_dssp             EC--SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             Ec--CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence            43  34689999999 89999999887  788887766655554       57999999999999999999999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      +||+
T Consensus       282 ~wd~  285 (393)
T 1erj_A          282 LWNL  285 (393)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-30  Score=192.36  Aligned_cols=156  Identities=15%  Similarity=0.332  Sum_probs=143.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|++++|+|+++++++|+.|++|++||+++++.+..+..|...|..++++|++.++++|+.|++|++||+++.+..
T Consensus       190 ~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          190 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK  269 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            46678999999999999999999999999999999999999999999999999999999999999999999999887776


Q ss_pred             eEEeeCCCCCeeEEEECCC--------------------CCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECC
Q psy12456         86 KTLQLDPNYEIRDLCFDQS--------------------GTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGT  143 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~--------------------~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~  143 (162)
                      ..+.. +...+.+++|+|+                    +.++++|+.|  +++|+......+..+.+|...|.+++|+|
T Consensus       270 ~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~  348 (410)
T 1vyh_C          270 AELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS  348 (410)
T ss_dssp             EEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred             eEecC-CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC
Confidence            66655 4557999999996                    6789999887  78888888889999999999999999999


Q ss_pred             CCceEEEeecCCeEEEeeC
Q psy12456        144 HAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       144 ~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++++|++++.|++|++||+
T Consensus       349 ~g~~l~s~s~D~~i~vwd~  367 (410)
T 1vyh_C          349 GGKFILSCADDKTLRVWDY  367 (410)
T ss_dssp             SSSCEEEEETTTEEEEECC
T ss_pred             CCCEEEEEeCCCeEEEEEC
Confidence            9999999999999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-30  Score=188.47  Aligned_cols=157  Identities=22%  Similarity=0.335  Sum_probs=133.7

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeee---eccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVT---DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~---~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      ++.+..|.+++|+|+|++||+|+.|++|+|||+++++...   ...+|..+|.+++|+|++++|++|+.|+++++||+..
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~   92 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ   92 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence            3444589999999999999999999999999998876432   2357999999999999999999999999999999875


Q ss_pred             Cc--ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc---eEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         82 LK--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW---QELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        82 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      ..  .+..+.. +...|.+++|+|++.+|++++.|  +++|+....   ..+..+..|...|.+++|+|++++|++++.|
T Consensus        93 ~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d  171 (345)
T 3fm0_A           93 DDFECVTTLEG-HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD  171 (345)
T ss_dssp             C-EEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred             CCeEEEEEccC-CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence            43  3344444 45579999999999999999988  788887553   4566788999999999999999999999999


Q ss_pred             CeEEEeeC
Q psy12456        155 RTLKLYSL  162 (162)
Q Consensus       155 ~~i~iw~~  162 (162)
                      ++|++|++
T Consensus       172 ~~i~~w~~  179 (345)
T 3fm0_A          172 DTVKLYRE  179 (345)
T ss_dssp             SCEEEEEE
T ss_pred             CcEEEEEe
Confidence            99999973

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.98  E-value=1.6e-30  Score=189.86  Aligned_cols=157  Identities=18%  Similarity=0.295  Sum_probs=138.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCC-CEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENG-YYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .+...|++++|+|+|++|++|+.||.|++||+++++.+..++.|...|.+++|+|++ .++++++.|++|++||+++.+.
T Consensus       137 ~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~  216 (357)
T 4g56_B          137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP  216 (357)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce
Confidence            456789999999999999999999999999999999999999999999999999987 4789999999999999988776


Q ss_pred             eeEEee-CCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCC-ceEEEeecCCeEEE
Q psy12456         85 FKTLQL-DPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHA-HYLASSSMDRTLKL  159 (162)
Q Consensus        85 ~~~~~~-~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~i  159 (162)
                      ...+.. .+...+.+++|+|+ +.++++|+.|  +++|+.+..+.+..+..|...|++++|+|++ ++|++++.|++|++
T Consensus       217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~i  296 (357)
T 4g56_B          217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV  296 (357)
T ss_dssp             BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred             eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence            554433 23456899999997 5688888776  8889888888888899999999999999987 58999999999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus       297 wd~  299 (357)
T 4g56_B          297 LDA  299 (357)
T ss_dssp             ECT
T ss_pred             EEC
Confidence            985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.98  E-value=7.6e-30  Score=197.67  Aligned_cols=157  Identities=13%  Similarity=0.217  Sum_probs=137.5

Q ss_pred             CCCCcEEEEEeCCCCc-EEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .+...|++++|+|++. ++++|+.|++|++||.++++.+..+.+|...|.+++|+|++++|++++.|++|++||+++.+.
T Consensus       145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~  224 (611)
T 1nr0_A          145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK  224 (611)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence            4667899999999987 699999999999999999999999999999999999999999999999999999999987766


Q ss_pred             eeEEee------CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEE------------------------------
Q psy12456         85 FKTLQL------DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQEL------------------------------  126 (162)
Q Consensus        85 ~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~------------------------------  126 (162)
                      ...+..      .|...|.+++|+|+++++++++.|  +++|+..+.+.+                              
T Consensus       225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~  304 (611)
T 1nr0_A          225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG  304 (611)
T ss_dssp             EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred             eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence            655532      355679999999999999999988  788886654332                              


Q ss_pred             -------------EEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        127 -------------AMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       127 -------------~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                                   ..+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus       305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~  353 (611)
T 1nr0_A          305 FINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI  353 (611)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence                         234579999999999999999999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=7.7e-30  Score=181.83  Aligned_cols=158  Identities=16%  Similarity=0.294  Sum_probs=133.0

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC--eeeeeccCCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEEc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ--KNVTDFQLDAGPIQALSFSE--NGYYLATAADENCVKLWDL   79 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~d~~v~~wd~   79 (162)
                      ...|...|++++|+|+|++||+|+.|++|+|||+..+  +.+..+.+|.++|.+++|++  ++++|++|+.|++|++||+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            4567889999999999999999999999999999743  67788999999999999986  4899999999999999999


Q ss_pred             ccCc--ceeEEeeCCCCCeeEEEECCC--CCEEEEeccc--EEEEEeCCce--EEEEeecCcccEEEEEECCC-------
Q psy12456         80 RKLK--NFKTLQLDPNYEIRDLCFDQS--GTYMAVAGTD--VRVFLCKQWQ--ELAMFNEHTAMVTGVRFGTH-------  144 (162)
Q Consensus        80 ~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~--~~i~~~~~~~--~~~~~~~h~~~v~~~~~s~~-------  144 (162)
                      ++.+  ....+.. +...|.+++|+|+  +.++++++.|  +++|+.+...  ....+.+|...|.+++|+|+       
T Consensus        85 ~~~~~~~~~~~~~-h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  163 (297)
T 2pm7_B           85 ENGRWSQIAVHAV-HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  163 (297)
T ss_dssp             SSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred             CCCceEEEEEeec-CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence            8653  3333433 4557999999997  8899999887  6778776542  23457889999999999997       


Q ss_pred             ------CceEEEeecCCeEEEeeC
Q psy12456        145 ------AHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       145 ------~~~l~s~s~D~~i~iw~~  162 (162)
                            +++|++|+.|++|++||+
T Consensus       164 ~~~~~~~~~l~sgs~D~~v~lwd~  187 (297)
T 2pm7_B          164 HNGTKESRKFVTGGADNLVKIWKY  187 (297)
T ss_dssp             ------CCEEEEEETTSCEEEEEE
T ss_pred             CCCCCCcceEEEEcCCCcEEEEEE
Confidence                  579999999999999984

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=8.3e-30  Score=186.69  Aligned_cols=153  Identities=17%  Similarity=0.232  Sum_probs=123.2

Q ss_pred             CCcEEEEEeCCCCcEEEE--eeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          8 GPTLTTAQLHPDGLIFGI--GTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~--g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      ...+.+++|+|||+++|+  |+.|++|+|||+++++++..++ |...|.+++|+||++++++++.++. .+|+..+.+..
T Consensus       133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~-~~~~~~~~~~~  210 (365)
T 4h5i_A          133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSL-EVISTVTGSCI  210 (365)
T ss_dssp             TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCE-EEEETTTCCEE
T ss_pred             ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccceeE-EEEEeccCcce
Confidence            345788999999998764  5578999999999999988886 6678999999999999999886654 44443221110


Q ss_pred             ------------eE---------------------------------------EeeCCCCCeeEEEECCCCCEEEEeccc
Q psy12456         86 ------------KT---------------------------------------LQLDPNYEIRDLCFDQSGTYMAVAGTD  114 (162)
Q Consensus        86 ------------~~---------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~  114 (162)
                                  ..                                       ....+...|.+++|+|+|++|++|+.|
T Consensus       211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D  290 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND  290 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred             eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence                        00                                       001123458899999999999999988


Q ss_pred             --EEEEEeCCceEEEEe-ecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        115 --VRVFLCKQWQELAMF-NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       115 --~~i~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                        ++||+..+.+.+..+ .+|...|++++|||++++|||+|.|++||||++
T Consensus       291 ~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~i  341 (365)
T 4h5i_A          291 NSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKL  341 (365)
T ss_dssp             SCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred             CEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence              889998888888875 789999999999999999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=1.6e-29  Score=184.32  Aligned_cols=156  Identities=21%  Similarity=0.314  Sum_probs=135.8

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeee----------------------------------------
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTD----------------------------------------   45 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~----------------------------------------   45 (162)
                      .|...|++++|+|++++|++|+.||+|++||..+++....                                        
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~  141 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE  141 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence            4677899999999999999999999999999876544322                                        


Q ss_pred             --------ccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECC--CCCEEEEeccc-
Q psy12456         46 --------FQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQ--SGTYMAVAGTD-  114 (162)
Q Consensus        46 --------~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~-  114 (162)
                              +..|...|.+++|+|++.+|++++.|++|++||+++.+.+..+..| ...+.+++|+|  ++.++++++.| 
T Consensus       142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~g~~l~sgs~Dg  220 (354)
T 2pbi_B          142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH-GADVLCLDLAPSETGNTFVSGGCDK  220 (354)
T ss_dssp             CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECCCSSCCEEEEEETTS
T ss_pred             cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC-CCCeEEEEEEeCCCCCEEEEEeCCC
Confidence                    2346778899999999999999999999999999988877777654 45689999987  46899999887 


Q ss_pred             -EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        115 -VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       115 -~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                       +++|+.+..+.+..+..|...|.+++|+|++++|++++.|++|++||+
T Consensus       221 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~  269 (354)
T 2pbi_B          221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL  269 (354)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence             788888888888899999999999999999999999999999999985

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-29  Score=182.76  Aligned_cols=154  Identities=17%  Similarity=0.336  Sum_probs=127.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC--eeeeec-cC-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ--KNVTDF-QL-DAGPIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~--~~~~~~-~~-~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      .|...|.+++++|+  +||+|+.|++|++||++.+  +.+..+ .. |..+|.+++|+|++++|++++.|++|++||+..
T Consensus        12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~   89 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE   89 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred             cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence            57788999999998  9999999999999999875  445555 34 899999999999999999999999999999853


Q ss_pred             C-------cceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC----ceEEEEeecCcccEEEEEECCCCceE
Q psy12456         82 L-------KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ----WQELAMFNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        82 ~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~----~~~~~~~~~h~~~v~~~~~s~~~~~l  148 (162)
                      .       +....+.. +...|.+++|+|++++|++++.|  +++|+...    .+.+..+.+|...|.+++|+|++++|
T Consensus        90 ~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l  168 (330)
T 2hes_X           90 SADRTFEMDLLAIIEG-HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALL  168 (330)
T ss_dssp             -----CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEE
T ss_pred             CcCccccceeEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEE
Confidence            2       22333443 45579999999999999999987  78888732    35677789999999999999999999


Q ss_pred             EEeecCCeEEEeeC
Q psy12456        149 ASSSMDRTLKLYSL  162 (162)
Q Consensus       149 ~s~s~D~~i~iw~~  162 (162)
                      ++++.|++|++||+
T Consensus       169 ~s~s~D~~i~iW~~  182 (330)
T 2hes_X          169 ASSSYDDTVRIWKD  182 (330)
T ss_dssp             EEEETTSCEEEEEE
T ss_pred             EEEcCCCeEEEEEC
Confidence            99999999999973

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=184.88  Aligned_cols=155  Identities=14%  Similarity=0.197  Sum_probs=130.6

Q ss_pred             CCCCcEEEEEeCCCCc-EEEEeeCCCcEEEEECCCCeeeeecc--CCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQKNVTDFQ--LDAGPIQALSFSE-NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      .|...|++++|+|++. +|++|+.||+|++||++++++...+.  .+...+.+++|+| ++++|++|+.|++|++||+++
T Consensus       167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~  246 (344)
T 4gqb_B          167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS  246 (344)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred             CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence            4678899999999884 88999999999999999999888775  3456799999998 567899999999999999998


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCC-CEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCc-eEEEeecCCeE
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSG-TYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH-YLASSSMDRTL  157 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i  157 (162)
                      .+.+..+..| ...|.+++|+|++ .+|++++.|  +++|+....+. ..+.+|...|.+++|+|+++ +|+++|.|++|
T Consensus       247 ~~~~~~~~~h-~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v  324 (344)
T 4gqb_B          247 TSCVLSSAVH-SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQV  324 (344)
T ss_dssp             --CCEEEECC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             CcEEEEEcCC-CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence            8888888764 4579999999997 578899887  78887766654 45789999999999999986 56799999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      ++|++
T Consensus       325 ~~w~v  329 (344)
T 4gqb_B          325 VHHVV  329 (344)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=1.9e-29  Score=182.89  Aligned_cols=155  Identities=15%  Similarity=0.255  Sum_probs=137.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc-
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN-   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~-   84 (162)
                      .|...|++++|+|+++++++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.+++||+.+.+. 
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~  132 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence            4677899999999999999999999999999999999999999999999999999999999999999999999976432 


Q ss_pred             ---eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         85 ---FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        85 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                         ...+.. +...+.++.|++++. +++++.|  +++|+..+.+.+..+.+|...|.+++|+|+++++++++.|++|++
T Consensus       133 ~~~~~~~~~-h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~  210 (340)
T 1got_B          133 VRVSRELAG-HTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL  210 (340)
T ss_dssp             CEEEEEEEC-CSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             ceeEEEecC-CCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence               223333 455799999998876 5666665  889998888889999999999999999999999999999999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus       211 wd~  213 (340)
T 1got_B          211 WDV  213 (340)
T ss_dssp             EET
T ss_pred             EEC
Confidence            985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=3.4e-29  Score=179.02  Aligned_cols=156  Identities=19%  Similarity=0.383  Sum_probs=140.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|++++|+|+++++++|+.||.|++||+++++.+..+..|...|.+++|+|++++|++++.|++|++||+++.+..
T Consensus        63 ~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  142 (312)
T 4ery_A           63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL  142 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999987777


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe-ecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF-NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+.. +..++.+++|+|++.++++++.|  +++|+....+.+..+ ..+...+..++|+|+++++++++.|+.|++||+
T Consensus       143 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~  221 (312)
T 4ery_A          143 KTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY  221 (312)
T ss_dssp             EEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             EEecC-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            66655 34579999999999999999887  788888777766654 456778999999999999999999999999985

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=1.7e-29  Score=195.73  Aligned_cols=156  Identities=20%  Similarity=0.355  Sum_probs=129.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe--eeee--------------------------------------
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--NVTD--------------------------------------   45 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~--~~~~--------------------------------------   45 (162)
                      .|...|++++|+|+|+++|+|+.||+|+|||+.+++  ....                                      
T Consensus        57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~  136 (611)
T 1nr0_A           57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT  136 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred             CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC
Confidence            466789999999999999999999999999986432  1112                                      


Q ss_pred             ------ccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EE
Q psy12456         46 ------FQLDAGPIQALSFSENGY-YLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VR  116 (162)
Q Consensus        46 ------~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~  116 (162)
                            +.+|..+|.+++|+|++. .|++++.|++|++||.++.+....+.. |...|.+++|+|+++++++++.|  ++
T Consensus       137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg~~las~s~D~~i~  215 (611)
T 1nr0_A          137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIV  215 (611)
T ss_dssp             CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-ccCceEEEEECCCCCEEEEEECCCcEE
Confidence                  345666677777777765 589999999999999887766666655 44579999999999999999988  78


Q ss_pred             EEEeCCceEEEEee-------cCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        117 VFLCKQWQELAMFN-------EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       117 i~~~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +|+....+.+..+.       +|...|.+++|+|++++|++++.|++|++||+
T Consensus       216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~  268 (611)
T 1nr0_A          216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV  268 (611)
T ss_dssp             EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            88877777777763       79999999999999999999999999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=1.5e-29  Score=193.67  Aligned_cols=152  Identities=25%  Similarity=0.447  Sum_probs=135.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|++++|+|+++++++++.|++|++||. +++.+..+..|..+|.+++|+|++++|++++.|++|++||. +.+.+
T Consensus       424 ~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~  501 (577)
T 2ymu_A          424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLL  501 (577)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEE
T ss_pred             CCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEE
Confidence            45678999999999999999999999999996 56778888999999999999999999999999999999996 44666


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..+..| ...|.+++|+|++++|++++.|  +++|+. +.+.+..+.+|...|++++|+|++++|+|++.|++|++||
T Consensus       502 ~~~~~h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          502 QTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEECC-SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEeCC-CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            666654 4579999999999999999988  666663 4677888999999999999999999999999999999997

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=4.1e-29  Score=178.05  Aligned_cols=156  Identities=15%  Similarity=0.265  Sum_probs=131.2

Q ss_pred             CCCCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCCe--eeeeccCCCCCEEEEEEccC--CCEEEEEeCCCeEEEEEc
Q psy12456          6 AGGPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQK--NVTDFQLDAGPIQALSFSEN--GYYLATAADENCVKLWDL   79 (162)
Q Consensus         6 ~~~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~d~~v~~wd~   79 (162)
                      .|...|++++|+|  ++++||+|+.||+|++||+++++  .+..+..|..+|.+++|+|+  +.+|++++.|++|++||+
T Consensus        51 gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~  130 (297)
T 2pm7_B           51 GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF  130 (297)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEB
T ss_pred             cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEe
Confidence            4677899999986  48999999999999999998874  56677889999999999997  899999999999999999


Q ss_pred             ccCcc--eeEEeeCCCCCeeEEEECCC-------------CCEEEEeccc--EEEEEeCCce----EEEEeecCcccEEE
Q psy12456         80 RKLKN--FKTLQLDPNYEIRDLCFDQS-------------GTYMAVAGTD--VRVFLCKQWQ----ELAMFNEHTAMVTG  138 (162)
Q Consensus        80 ~~~~~--~~~~~~~~~~~v~~~~~~~~-------------~~~~~~~~~~--~~i~~~~~~~----~~~~~~~h~~~v~~  138 (162)
                      ++...  ...+. .+...+.+++|+|+             +.++++++.|  +++|+.+..+    ....+.+|...|.+
T Consensus       131 ~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~  209 (297)
T 2pm7_B          131 KENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  209 (297)
T ss_dssp             CSSSCBCCEEEE-CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             cCCCceeeeeee-cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence            86532  22333 34557999999997             5689999887  7888876533    55678899999999


Q ss_pred             EEECCCC---ceEEEeecCCeEEEeeC
Q psy12456        139 VRFGTHA---HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       139 ~~~s~~~---~~l~s~s~D~~i~iw~~  162 (162)
                      ++|+|++   ++|++++.|++|++||+
T Consensus       210 v~~sp~~~~~~~las~s~D~~v~iWd~  236 (297)
T 2pm7_B          210 VAWSPTVLLRSYMASVSQDRTCIIWTQ  236 (297)
T ss_dssp             EEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             EEECCCCCCceEEEEEECCCcEEEEEe
Confidence            9999984   89999999999999984

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=1.2e-28  Score=177.35  Aligned_cols=155  Identities=18%  Similarity=0.320  Sum_probs=134.8

Q ss_pred             CCCCcEEEEEeCCC------CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456          6 AGGPTLTTAQLHPD------GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus         6 ~~~~~v~~~~~~~~------g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      .+...|+++.++|.      +.++++++.|+.|++||+++.+....+.+|..+|.+++|+|++++|++++.|++|++||+
T Consensus       146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~  225 (319)
T 3frx_A          146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL  225 (319)
T ss_dssp             CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            45678999999995      458999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEee--------cCcccEEEEEECCCCceEEE
Q psy12456         80 RKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFN--------EHTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~--------~h~~~v~~~~~s~~~~~l~s  150 (162)
                      ++.+.+..+..  ...+.+++|+|++.+++++..+ +++|.......+..+.        .|...+.+++|+|++++|++
T Consensus       226 ~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s  303 (319)
T 3frx_A          226 AAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA  303 (319)
T ss_dssp             TTTEEEEEEEC--CSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred             CCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEE
Confidence            98777666654  3469999999999999998766 7888887665554443        35667999999999999999


Q ss_pred             eecCCeEEEeeC
Q psy12456        151 SSMDRTLKLYSL  162 (162)
Q Consensus       151 ~s~D~~i~iw~~  162 (162)
                      |+.|+.|++||+
T Consensus       304 g~~Dg~i~vWd~  315 (319)
T 3frx_A          304 GYTDNVIRVWQV  315 (319)
T ss_dssp             EETTSCEEEEEE
T ss_pred             eecCceEEEEEE
Confidence            999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=1.6e-29  Score=185.82  Aligned_cols=157  Identities=13%  Similarity=0.269  Sum_probs=127.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc-----
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR-----   80 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~-----   80 (162)
                      .|...|++++|+|++++|++|+.||+|+|||+.+++....++.|...|.+++|+|++++|++|+.|+.+++||+.     
T Consensus        64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~  143 (380)
T 3iz6_a           64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR  143 (380)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred             ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence            467889999999999999999999999999999999888888888888888888887777776666666666653     


Q ss_pred             ---------------------------------------------cCcceeEEe----eCCCCCeeEEEECC-CCCEEEE
Q psy12456         81 ---------------------------------------------KLKNFKTLQ----LDPNYEIRDLCFDQ-SGTYMAV  110 (162)
Q Consensus        81 ---------------------------------------------~~~~~~~~~----~~~~~~v~~~~~~~-~~~~~~~  110 (162)
                                                                   +.+.+..+.    ..+...+.+++|++ ++.++++
T Consensus       144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  223 (380)
T 3iz6_a          144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFIS  223 (380)
T ss_dssp             CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE
T ss_pred             cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEE
Confidence                                                         222222221    12344688889976 7899999


Q ss_pred             eccc--EEEEEeC-CceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        111 AGTD--VRVFLCK-QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       111 ~~~~--~~i~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      |+.|  +++|+.+ ..+.+..+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus       224 gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~  278 (380)
T 3iz6_a          224 GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM  278 (380)
T ss_dssp             EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEET
T ss_pred             EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEEC
Confidence            9988  7888876 34667788999999999999999999999999999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.4e-30  Score=196.05  Aligned_cols=155  Identities=12%  Similarity=0.081  Sum_probs=133.5

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-eeeeeccCCCCCEEEE--EEccCC-CEEEEEeCCCeEEEEEcccC
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-KNVTDFQLDAGPIQAL--SFSENG-YYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i--~~~~~~-~~l~s~~~d~~v~~wd~~~~   82 (162)
                      +...|++++|+|++ +||+|+.||+|++||++++ .+...+..|..+|.+|  +|+|++ ++|++++.|++|++||+++.
T Consensus       265 h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~  343 (524)
T 2j04_B          265 ADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI  343 (524)
T ss_dssp             TTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred             CCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence            55789999999865 7999999999999999876 4556688999999999  578887 89999999999999999987


Q ss_pred             cceeEEeeCCC-CCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         83 KNFKTLQLDPN-YEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        83 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      +....+..+.. ..+.+++|+|++..+++++.+  +++|+.+....+..+.+|...|++++|+|++++|++|+.|++|++
T Consensus       344 ~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~l  423 (524)
T 2j04_B          344 ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLII  423 (524)
T ss_dssp             HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEEC
T ss_pred             CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEE
Confidence            76555554433 247889999999999998877  888888777766778899999999999999999999999999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus       424 wd~  426 (524)
T 2j04_B          424 TNA  426 (524)
T ss_dssp             CBS
T ss_pred             Eec
Confidence            984

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=3.8e-29  Score=182.62  Aligned_cols=155  Identities=17%  Similarity=0.246  Sum_probs=133.1

Q ss_pred             CCCCcEEEEEeCCCCc-EEEEeeCCCcEEEEECCCCeeeeecc--CCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQKNVTDFQ--LDAGPIQALSFSEN-GYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~i~~~~~-~~~l~s~~~d~~v~~wd~~~   81 (162)
                      .+...|++++|+|++. ++++++.||+|++||+++++++..+.  .+...+.+++|+|+ +.+|++|+.|+.|++||+++
T Consensus       179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSC
T ss_pred             CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCC
Confidence            4678899999999875 88999999999999999988776554  46678999999997 57899999999999999998


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCC-CEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECC-CCceEEEeecCCeE
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSG-TYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGT-HAHYLASSSMDRTL  157 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i  157 (162)
                      .+....+..+ ...|.+++|+|++ .+|++++.|  ++||+.+..+.+.. .+|...|++++|+| ++++|+|++.|++|
T Consensus       259 ~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v  336 (357)
T 4g56_B          259 PDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKV  336 (357)
T ss_dssp             GGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred             CcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeE
Confidence            8887777654 4579999999987 678888877  78888777666544 57999999999998 78999999999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      ++|++
T Consensus       337 ~iW~~  341 (357)
T 4g56_B          337 LHHHL  341 (357)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99986

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.6e-29  Score=184.49  Aligned_cols=156  Identities=13%  Similarity=0.106  Sum_probs=127.3

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe---eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK---NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      .+...|++++|+|++++|++|+.||.|++||+++++   +...+..|..+|.+++|+|++++|++++.|+.|++||++..
T Consensus        53 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  132 (377)
T 3dwl_C           53 DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE  132 (377)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC---
T ss_pred             cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc
Confidence            567889999999999999999999999999999877   67778889999999999999999999999999999999876


Q ss_pred             cc---eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeC------------------CceEEEEeecCcccEEEE
Q psy12456         83 KN---FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCK------------------QWQELAMFNEHTAMVTGV  139 (162)
Q Consensus        83 ~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~------------------~~~~~~~~~~h~~~v~~~  139 (162)
                      +.   ...+...+...+.+++|+|++.++++++.|  +++|+..                  ..+.+..+ .|...|.++
T Consensus       133 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~  211 (377)
T 3dwl_C          133 NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV  211 (377)
T ss_dssp             --CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE
T ss_pred             ccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE
Confidence            52   445544356679999999999999999887  7888864                  23455566 899999999


Q ss_pred             EECCCCceEEEeecCCeEEEeeC
Q psy12456        140 RFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       140 ~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +|+|++++|++++.|+.|++||+
T Consensus       212 ~~sp~~~~l~~~~~d~~i~iwd~  234 (377)
T 3dwl_C          212 GFSPSGNALAYAGHDSSVTIAYP  234 (377)
T ss_dssp             EECTTSSCEEEEETTTEEC-CEE
T ss_pred             EECCCCCEEEEEeCCCcEEEEEC
Confidence            99999999999999999999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=5e-29  Score=195.34  Aligned_cols=157  Identities=18%  Similarity=0.266  Sum_probs=138.2

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .|...|++++|+|+|+++++|+.||+|+|||+++++.+..+.+|..+|.+++|+|++++|++++.|++|++||.......
T Consensus       428 ~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~  507 (694)
T 3dm0_A          428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY  507 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999998643322


Q ss_pred             eEEe--eCCCCCeeEEEECCCC--CEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         86 KTLQ--LDPNYEIRDLCFDQSG--TYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        86 ~~~~--~~~~~~v~~~~~~~~~--~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      ....  ..+...|.+++|+|++  .++++++.|  +++|+....+....+.+|...|.+++|+|++++|++++.|++|++
T Consensus       508 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~i  587 (694)
T 3dm0_A          508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL  587 (694)
T ss_dssp             EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEE
T ss_pred             eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence            1111  1244569999999986  578888877  889998888888889999999999999999999999999999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus       588 wd~  590 (694)
T 3dm0_A          588 WDL  590 (694)
T ss_dssp             EET
T ss_pred             EEC
Confidence            985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.97  E-value=4.6e-29  Score=184.28  Aligned_cols=158  Identities=15%  Similarity=0.273  Sum_probs=138.2

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      ..+...|++++|+|++++|++|+.||.|++||+++++.+..+..|..+|.+++|+|++++|++++.|++|++||+++.+.
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  215 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT  215 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             eeEEeeCC-----------------------CCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe-ecCcccEEE
Q psy12456         85 FKTLQLDP-----------------------NYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF-NEHTAMVTG  138 (162)
Q Consensus        85 ~~~~~~~~-----------------------~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~-~~h~~~v~~  138 (162)
                      +..+..+.                       ...+.+++|+|++.++++++.+  +++|+.+..+.+..+ ..|...|.+
T Consensus       216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  295 (420)
T 3vl1_A          216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNS  295 (420)
T ss_dssp             EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEE
T ss_pred             eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCcee
Confidence            66665321                       1345566778999999999887  788888777666555 468899999


Q ss_pred             EEECCCCc-eEEEeecCCeEEEeeC
Q psy12456        139 VRFGTHAH-YLASSSMDRTLKLYSL  162 (162)
Q Consensus       139 ~~~s~~~~-~l~s~s~D~~i~iw~~  162 (162)
                      ++|+|+++ ++++++.|+.|++||+
T Consensus       296 ~~~~~~~~~~l~~g~~dg~i~vwd~  320 (420)
T 3vl1_A          296 LTVDGNNANYIYAGYENGMLAQWDL  320 (420)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEET
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEEc
Confidence            99999998 9999999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=2.3e-28  Score=177.26  Aligned_cols=155  Identities=19%  Similarity=0.333  Sum_probs=132.9

Q ss_pred             CCCCcEEEEEe-----CC-CCcEEEEeeCCCcEEEEECCCC-------eeeeeccCCCCCEEEEEEccCCCEEEEEeCCC
Q psy12456          6 AGGPTLTTAQL-----HP-DGLIFGIGTSDSQVQIWDLKKQ-------KNVTDFQLDAGPIQALSFSENGYYLATAADEN   72 (162)
Q Consensus         6 ~~~~~v~~~~~-----~~-~g~~~a~g~~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~   72 (162)
                      .|...|++++|     +| ++++|++|+.|++|++||+.++       .+...+.+|..+|.+++|+|++.++++++.|+
T Consensus        19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~   98 (343)
T 2xzm_R           19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK   98 (343)
T ss_dssp             CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred             cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence            46778999999     77 9999999999999999999753       45677889999999999999999999999999


Q ss_pred             eEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEE--eecCcccEEEEEECCCC---
Q psy12456         73 CVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAM--FNEHTAMVTGVRFGTHA---  145 (162)
Q Consensus        73 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~--~~~h~~~v~~~~~s~~~---  145 (162)
                      +|++||+++.+....+..| ...|.+++|+|++.++++++.|  +++|+.........  ...|...|.+++|+|++   
T Consensus        99 ~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  177 (343)
T 2xzm_R           99 TLRLWDLRTGTTYKRFVGH-QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA  177 (343)
T ss_dssp             EEEEEETTSSCEEEEEECC-CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred             cEEEEECCCCcEEEEEcCC-CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccc
Confidence            9999999988877777654 4579999999999999999887  77887653322221  23789999999999986   


Q ss_pred             -------ceEEEeecCCeEEEee
Q psy12456        146 -------HYLASSSMDRTLKLYS  161 (162)
Q Consensus       146 -------~~l~s~s~D~~i~iw~  161 (162)
                             .++++++.|+.|++||
T Consensus       178 ~~~~~~~~~l~s~~~d~~i~iwd  200 (343)
T 2xzm_R          178 NKVQPFAPYFASVGWDGRLKVWN  200 (343)
T ss_dssp             SCCCSSCCEEEEEETTSEEEEEE
T ss_pred             cccCCCCCEEEEEcCCCEEEEEc
Confidence                   7899999999999998

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.6e-28  Score=175.86  Aligned_cols=157  Identities=18%  Similarity=0.337  Sum_probs=133.4

Q ss_pred             CCCCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCC---------eeeeeccCCCCCEEEEEEccC--CCEEEEEeCCC
Q psy12456          6 AGGPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQ---------KNVTDFQLDAGPIQALSFSEN--GYYLATAADEN   72 (162)
Q Consensus         6 ~~~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~---------~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~d~   72 (162)
                      .+...|++++|+|  ++++|++|+.||.|++||++++         +++..+..|..+|.+++|+|+  +.++++++.|+
T Consensus        55 ~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  134 (351)
T 3f3f_A           55 AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG  134 (351)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC
T ss_pred             cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC
Confidence            4678899999999  6999999999999999999887         567888899999999999999  99999999999


Q ss_pred             eEEEEEcccCccee----------------------------------------------------------EEe-eCCC
Q psy12456         73 CVKLWDLRKLKNFK----------------------------------------------------------TLQ-LDPN   93 (162)
Q Consensus        73 ~v~~wd~~~~~~~~----------------------------------------------------------~~~-~~~~   93 (162)
                      .|++||+++.+...                                                          ... ..+.
T Consensus       135 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  214 (351)
T 3f3f_A          135 ILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK  214 (351)
T ss_dssp             EEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCC
T ss_pred             cEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCC
Confidence            99999986543211                                                          001 1234


Q ss_pred             CCeeEEEECCCC----CEEEEeccc--EEEEEeCCc--------------------------------------------
Q psy12456         94 YEIRDLCFDQSG----TYMAVAGTD--VRVFLCKQW--------------------------------------------  123 (162)
Q Consensus        94 ~~v~~~~~~~~~----~~~~~~~~~--~~i~~~~~~--------------------------------------------  123 (162)
                      ..|.+++|+|++    .++++++.|  +++|+....                                            
T Consensus       215 ~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (351)
T 3f3f_A          215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL  294 (351)
T ss_dssp             SCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSE
T ss_pred             cceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccc
Confidence            579999999998    899999887  788876542                                            


Q ss_pred             --eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        124 --QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       124 --~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                        +.+..+.+|...|++++|+|++++|++++.|+.|++|++
T Consensus       295 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~  335 (351)
T 3f3f_A          295 QVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA  335 (351)
T ss_dssp             EEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             cccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence              556678899999999999999999999999999999984

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=1.5e-29  Score=181.88  Aligned_cols=156  Identities=19%  Similarity=0.308  Sum_probs=129.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe--eeeeccCCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--NVTDFQLDAGPIQALSFSE--NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      .|...|++++|+|+|++||+|+.|++|+|||+++++  .+..+++|.++|.+++|+|  ++++|++|+.|++|++||+++
T Consensus        11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~   90 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN   90 (316)
T ss_dssp             ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred             cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence            577899999999999999999999999999998764  4678899999999999985  489999999999999999986


Q ss_pred             Cc--ceeEEeeCCCCCeeEEEECCC--CCEEEEeccc--EEEEEeCCc---eEEEEeecCcccEEEEEECCC--------
Q psy12456         82 LK--NFKTLQLDPNYEIRDLCFDQS--GTYMAVAGTD--VRVFLCKQW---QELAMFNEHTAMVTGVRFGTH--------  144 (162)
Q Consensus        82 ~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~--~~i~~~~~~---~~~~~~~~h~~~v~~~~~s~~--------  144 (162)
                      .+  ....+.. +...|.+++|+|+  +.++++++.|  +++|+....   .....+.+|...|.+++|+|+        
T Consensus        91 ~~~~~~~~~~~-h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  169 (316)
T 3bg1_A           91 GTWEKSHEHAG-HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID  169 (316)
T ss_dssp             SCCCEEEEECC-CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred             CcceEEEEccC-CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccc
Confidence            53  3333333 4557999999998  7899999988  788887643   234556789999999999997        


Q ss_pred             ---------CceEEEeecCCeEEEeeC
Q psy12456        145 ---------AHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       145 ---------~~~l~s~s~D~~i~iw~~  162 (162)
                               +++|++++.|++|++||+
T Consensus       170 ~~~~~~~~~~~~l~sgs~D~~v~lWd~  196 (316)
T 3bg1_A          170 HPSGQKPNYIKRFASGGCDNLIKLWKE  196 (316)
T ss_dssp             -CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred             cccccCccccceEEEecCCCeEEEEEe
Confidence                     478999999999999984

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=3.5e-28  Score=179.36  Aligned_cols=154  Identities=21%  Similarity=0.317  Sum_probs=131.7

Q ss_pred             CCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeec-------cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456          8 GPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDF-------QLDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus         8 ~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      ...+++++++| +++++++|+.||.|++||+++++.+..+       .+|...|.+++|+|++++|++++.|++|++||+
T Consensus       206 ~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~  285 (393)
T 1erj_A          206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL  285 (393)
T ss_dssp             SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            45689999999 9999999999999999999998877766       568889999999999999999999999999999


Q ss_pred             ccCcc------------eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECC--
Q psy12456         80 RKLKN------------FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGT--  143 (162)
Q Consensus        80 ~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~--  143 (162)
                      ++...            ...+.. +...|.+++|+|++.++++++.|  +++|+....+.+..+.+|...|.+++|+|  
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~  364 (393)
T 1erj_A          286 QNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS  364 (393)
T ss_dssp             ---------------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred             CCCCCcccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCc
Confidence            75321            223333 44569999999999999999988  77888888888889999999999999986  


Q ss_pred             ----CCceEEEeecCCeEEEeeC
Q psy12456        144 ----HAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       144 ----~~~~l~s~s~D~~i~iw~~  162 (162)
                          ++++|++|+.|++|++|++
T Consensus       365 ~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          365 SLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             TTCTTCEEEEEEETTSEEEEEEE
T ss_pred             CcCCCCCEEEEECCCCcEEECcc
Confidence                6789999999999999984

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.7e-30  Score=187.39  Aligned_cols=155  Identities=12%  Similarity=0.123  Sum_probs=128.6

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC--eeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc-
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ--KNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK-   83 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~-   83 (162)
                      +..+|++++|+|+|++||+|+.||.|++||++++  +.+..+..|..+|.+++|+|++++|++++.|++|++||+.+.+ 
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~   89 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT   89 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            4568999999999999999999999999999988  7888899999999999999999999999999999999998755 


Q ss_pred             --ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCce---EEEEeec-CcccEEEEEECCCCceEEEeecCC
Q psy12456         84 --NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ---ELAMFNE-HTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        84 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~---~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                        ....+.. +...+.+++|+|++.++++++.|  +++|+....+   ....+.. |...|.+++|+|++++|++++.|+
T Consensus        90 ~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~  168 (377)
T 3dwl_C           90 WKQTLVLLR-LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR  168 (377)
T ss_dssp             CCCEEECCC-CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS
T ss_pred             eeeeeEecc-cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC
Confidence              3333333 45679999999999999999887  6677665544   3566777 999999999999999999999999


Q ss_pred             eEEEeeC
Q psy12456        156 TLKLYSL  162 (162)
Q Consensus       156 ~i~iw~~  162 (162)
                      .|++||+
T Consensus       169 ~i~iwd~  175 (377)
T 3dwl_C          169 KAYVLSA  175 (377)
T ss_dssp             CEEEEEE
T ss_pred             EEEEEEE
Confidence            9999984

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=4.4e-28  Score=173.64  Aligned_cols=157  Identities=17%  Similarity=0.317  Sum_probs=132.3

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC----eeeeeccCCCCCEEEEEEcc--CCCEEEEEeCCCeEEEEE
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ----KNVTDFQLDAGPIQALSFSE--NGYYLATAADENCVKLWD   78 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~----~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~d~~v~~wd   78 (162)
                      ..|...|++++|+|++++||+|+.||.|++||++++    +.+..+..|..+|.+++|+|  ++++|++++.|++|++||
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            356789999999999999999999999999999876    46677889999999999999  699999999999999999


Q ss_pred             cccCc---------ceeEEeeCCCCCeeEEEECCC--CCEEEEeccc--EEEEEeCCce---------------------
Q psy12456         79 LRKLK---------NFKTLQLDPNYEIRDLCFDQS--GTYMAVAGTD--VRVFLCKQWQ---------------------  124 (162)
Q Consensus        79 ~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~--~~i~~~~~~~---------------------  124 (162)
                      ++..+         ....+.. +...+.+++|+|+  +.++++++.|  +++|+....+                     
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (351)
T 3f3f_A           88 EDPDQEECSGRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH  166 (351)
T ss_dssp             ECTTSCTTSSCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred             cCCCcccccccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence            97652         2334433 4567999999999  9999999887  6777753211                     


Q ss_pred             ---------------------------------------EEEEeecCcccEEEEEECCCC----ceEEEeecCCeEEEee
Q psy12456        125 ---------------------------------------ELAMFNEHTAMVTGVRFGTHA----HYLASSSMDRTLKLYS  161 (162)
Q Consensus       125 ---------------------------------------~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~D~~i~iw~  161 (162)
                                                             .+..+.+|...|.+++|+|++    ++|++++.|+.|++||
T Consensus       167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd  246 (351)
T 3f3f_A          167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK  246 (351)
T ss_dssp             SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred             ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence                                                   144566799999999999998    8999999999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       247 ~  247 (351)
T 3f3f_A          247 I  247 (351)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-27  Score=172.77  Aligned_cols=155  Identities=16%  Similarity=0.285  Sum_probs=132.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .|...|++++|+|+|+++++|+.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.|+.|++||+++.+..
T Consensus        30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  109 (369)
T 3zwl_B           30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV  109 (369)
T ss_dssp             CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred             EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999876554


Q ss_pred             eEEeeCCCC------------------------------------------------------------CeeEEEECCCC
Q psy12456         86 KTLQLDPNY------------------------------------------------------------EIRDLCFDQSG  105 (162)
Q Consensus        86 ~~~~~~~~~------------------------------------------------------------~v~~~~~~~~~  105 (162)
                      ..+.  +..                                                            .+.+++|+|++
T Consensus       110 ~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (369)
T 3zwl_B          110 ATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG  187 (369)
T ss_dssp             EEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG
T ss_pred             EEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC
Confidence            4332  111                                                            45666677777


Q ss_pred             CEEEEeccc--EEEEEeCC-ceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        106 TYMAVAGTD--VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       106 ~~~~~~~~~--~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .++++++.+  +++|+... .+.+..+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus       188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~  247 (369)
T 3zwl_B          188 KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV  247 (369)
T ss_dssp             CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence            777776665  56666666 5777888899999999999999999999999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=2.8e-28  Score=179.91  Aligned_cols=157  Identities=16%  Similarity=0.258  Sum_probs=139.6

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC-------eeeeeccCCCCCEEEEEEccCC-CEEEEEeCCCeEEE
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ-------KNVTDFQLDAGPIQALSFSENG-YYLATAADENCVKL   76 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~d~~v~~   76 (162)
                      .|...|++++|+| ++++|++|+.||.|++||+.++       +++..+..|..+|.+++|+|++ ++|++++.|++|++
T Consensus        79 ~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~i  158 (402)
T 2aq5_A           79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV  158 (402)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEE
T ss_pred             cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEE
Confidence            4778999999999 9999999999999999999987       6678888999999999999997 79999999999999


Q ss_pred             EEcccCcceeEEe-eCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe-ecCccc-EEEEEECCCCceEEEe
Q psy12456         77 WDLRKLKNFKTLQ-LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF-NEHTAM-VTGVRFGTHAHYLASS  151 (162)
Q Consensus        77 wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~-~~h~~~-v~~~~~s~~~~~l~s~  151 (162)
                      ||+++.+....+. ..+...+.+++|+|++.++++++.|  +++|+.+..+.+..+ ..|... +..+.|+|++++++++
T Consensus       159 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  238 (402)
T 2aq5_A          159 WDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG  238 (402)
T ss_dssp             EETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEE
T ss_pred             EECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEe
Confidence            9999877766662 2345679999999999999999877  788888888888887 788776 8999999999999999


Q ss_pred             ---ecCCeEEEeeC
Q psy12456        152 ---SMDRTLKLYSL  162 (162)
Q Consensus       152 ---s~D~~i~iw~~  162 (162)
                         +.|+.|++||+
T Consensus       239 ~~~~~d~~i~iwd~  252 (402)
T 2aq5_A          239 FSRMSERQVALWDT  252 (402)
T ss_dssp             ECTTCCEEEEEEET
T ss_pred             ccCCCCceEEEEcC
Confidence               79999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=6.2e-29  Score=185.44  Aligned_cols=154  Identities=19%  Similarity=0.262  Sum_probs=127.0

Q ss_pred             CCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCee--eeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccC
Q psy12456          7 GGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKN--VTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         7 ~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      +...|++++||| ++++||+|+.||.|+|||+.+++.  ...+.+|.++|.+|+|+| ++++|++++.|++|++||++..
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~  197 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN  197 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence            456799999999 678999999999999999987654  445668999999999998 6899999999999999999764


Q ss_pred             cceeEEeeCC--CCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCc-eEEEeecCCeE
Q psy12456         83 KNFKTLQLDP--NYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH-YLASSSMDRTL  157 (162)
Q Consensus        83 ~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i  157 (162)
                      .. ..+..++  ...+.+++|+|++.++++|+.+  +++|+.+ .+.+..+..|...|.+++|+|++. ++++++.|++|
T Consensus       198 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v  275 (435)
T 4e54_B          198 IL-RVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTV  275 (435)
T ss_dssp             EE-EEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBC
T ss_pred             ce-eEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCccee
Confidence            32 2222222  2347889999999999999887  6777754 345667889999999999999876 77899999999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      ++||+
T Consensus       276 ~iwd~  280 (435)
T 4e54_B          276 KIWDL  280 (435)
T ss_dssp             CEEET
T ss_pred             eEEec
Confidence            99985

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1.3e-27  Score=171.63  Aligned_cols=155  Identities=17%  Similarity=0.290  Sum_probs=132.6

Q ss_pred             CCCCcEEEEEeCCCC--cEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDG--LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g--~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+...++.+++++++  .++++++.|+.|++||+++++.+..+..|.++|.+++|+|++++|++|+.|++|++||+++.+
T Consensus       169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~  248 (340)
T 4aow_A          169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK  248 (340)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence            456788999998854  578999999999999999999999999999999999999999999999999999999999877


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEE---------eecCcccEEEEEECCCCceEEEeec
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAM---------FNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~---------~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                      .+..+..  ...+.+++|+|++.+++.+... +++|+.+....+..         ...|...|++++|+|++++|++|+.
T Consensus       249 ~~~~~~~--~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  326 (340)
T 4aow_A          249 HLYTLDG--GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT  326 (340)
T ss_dssp             EEEEEEC--SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET
T ss_pred             eeeeecC--CceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence            7766654  3469999999999887766543 78888766544433         3468899999999999999999999


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      |+.|++||+
T Consensus       327 Dg~v~iW~~  335 (340)
T 4aow_A          327 DNLVRVWQV  335 (340)
T ss_dssp             TSCEEEEEE
T ss_pred             CCEEEEEeC
Confidence            999999985

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=6.2e-28  Score=184.70  Aligned_cols=153  Identities=25%  Similarity=0.437  Sum_probs=135.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|++++|+|+|+++++++.|+.|++||. +++.+..+..|..+|.+++|+|++++|++++.|++|++||.. .+.+
T Consensus       383 ~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~  460 (577)
T 2ymu_A          383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLL  460 (577)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEE
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEE
Confidence            46678999999999999999999999999995 567888899999999999999999999999999999999974 3555


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+.. +...+.+++|+|+++++++++.|  +++|+. ..+.+..+.+|...|++++|+|++++|++++.|+.|++||.
T Consensus       461 ~~~~~-~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          461 QTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             EEEEC-CSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             EEEcC-CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            55554 45579999999999999999887  677763 56778889999999999999999999999999999999984

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=4.4e-28  Score=177.74  Aligned_cols=157  Identities=23%  Similarity=0.377  Sum_probs=141.5

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC---C---CCCEEEEEEccCCCEEEEEeCC---CeEE
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL---D---AGPIQALSFSENGYYLATAADE---NCVK   75 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~---~---~~~v~~i~~~~~~~~l~s~~~d---~~v~   75 (162)
                      ..+...|++++|+|++ ++++|+.||.|++||+++++++..+..   |   ..+|.+++|+|++++|++++.|   +.|+
T Consensus       183 ~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~  261 (397)
T 1sq9_A          183 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT  261 (397)
T ss_dssp             SSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred             cCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence            4567889999999999 999999999999999999999999998   8   8999999999999999999999   9999


Q ss_pred             EEEcccCcceeEEeeC------------CCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEee------cC---
Q psy12456         76 LWDLRKLKNFKTLQLD------------PNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFN------EH---  132 (162)
Q Consensus        76 ~wd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~------~h---  132 (162)
                      +||+++.+.+..+...            +...+.+++|+|++.++++++.|  +++|+....+.+..+.      .|   
T Consensus       262 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  341 (397)
T 1sq9_A          262 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED  341 (397)
T ss_dssp             EEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred             EEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh
Confidence            9999988777766541            34579999999999999999877  7888888888888888      78   


Q ss_pred             ------------cccEEEEEECCCC----------ceEEEeecCCeEEEeeC
Q psy12456        133 ------------TAMVTGVRFGTHA----------HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       133 ------------~~~v~~~~~s~~~----------~~l~s~s~D~~i~iw~~  162 (162)
                                  ...|.+++|+|++          ++|++++.|+.|++|++
T Consensus       342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~  393 (397)
T 1sq9_A          342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  393 (397)
T ss_dssp             CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence                        9999999999998          79999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=6.4e-28  Score=175.20  Aligned_cols=158  Identities=15%  Similarity=0.208  Sum_probs=136.5

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe--eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      ..+..+|++++|+|+++++++|+.||.|++||+++++  .+..+..|..+|.+++|+|++++|++++.|+.|++||+.+.
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            3477899999999999999999999999999999887  88889999999999999999999999999999999999876


Q ss_pred             cceeEEe-eCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCce---EEEE-eecCcccEEEEEECCCCceEEEeecCC
Q psy12456         83 KNFKTLQ-LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ---ELAM-FNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        83 ~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~---~~~~-~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                      +...... ..+...+.+++|+|++.++++++.+  +++|+.....   .... ...|...|.+++|+|+++++++++.|+
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence            5443332 2345679999999999999999877  7788876543   2333 367899999999999999999999999


Q ss_pred             eEEEeeC
Q psy12456        156 TLKLYSL  162 (162)
Q Consensus       156 ~i~iw~~  162 (162)
                      .|++||+
T Consensus       165 ~i~~~d~  171 (372)
T 1k8k_C          165 KCRIFSA  171 (372)
T ss_dssp             CEEEEEC
T ss_pred             CEEEEEc
Confidence            9999983

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.96  E-value=1.2e-28  Score=177.02  Aligned_cols=157  Identities=14%  Similarity=0.229  Sum_probs=130.4

Q ss_pred             CCCCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCC--eeeeeccCCCCCEEEEEEccC--CCEEEEEeCCCeEEEEEc
Q psy12456          6 AGGPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQ--KNVTDFQLDAGPIQALSFSEN--GYYLATAADENCVKLWDL   79 (162)
Q Consensus         6 ~~~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~d~~v~~wd~   79 (162)
                      .|...|++++|+|  ++++|++|+.|++|++||++++  +.+..+..|..+|.+++|+|+  +.+|++|+.|++|++||+
T Consensus        55 gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~  134 (316)
T 3bg1_A           55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY  134 (316)
T ss_dssp             CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEE
T ss_pred             CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEec
Confidence            4677899999986  4899999999999999999886  456778889999999999997  789999999999999999


Q ss_pred             ccCcce--eEEeeCCCCCeeEEEECCC-----------------CCEEEEeccc--EEEEEeCCc---eEEEEeecCccc
Q psy12456         80 RKLKNF--KTLQLDPNYEIRDLCFDQS-----------------GTYMAVAGTD--VRVFLCKQW---QELAMFNEHTAM  135 (162)
Q Consensus        80 ~~~~~~--~~~~~~~~~~v~~~~~~~~-----------------~~~~~~~~~~--~~i~~~~~~---~~~~~~~~h~~~  135 (162)
                      +.....  ......+...+.+++|+|+                 +.++++++.|  +++|+....   +.+..+.+|...
T Consensus       135 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~  214 (316)
T 3bg1_A          135 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW  214 (316)
T ss_dssp             CSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC
T ss_pred             CCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc
Confidence            764321  1111224456889999997                 4689999887  788887543   567778999999


Q ss_pred             EEEEEECCCC----ceEEEeecCCeEEEeeC
Q psy12456        136 VTGVRFGTHA----HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       136 v~~~~~s~~~----~~l~s~s~D~~i~iw~~  162 (162)
                      |.+++|+|++    ++|++++.|++|++|++
T Consensus       215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~  245 (316)
T 3bg1_A          215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTC  245 (316)
T ss_dssp             EEEEECCCCSSCSCCEEEEEETTCEEEEEEC
T ss_pred             eEEEEecCCCCCCCceEEEEcCCCeEEEEEc
Confidence            9999999986    78999999999999984

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.5e-27  Score=171.42  Aligned_cols=151  Identities=17%  Similarity=0.258  Sum_probs=137.8

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCC-CeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKK-QKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      .+++++|+|+++++++|+.||.|++||+++ ++.+..+..|..+|.+++|+|++.+|++++.|+.|++||+++.+....+
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence            899999999999999999999999999998 7888999999999999999999999999999999999999987777666


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEeccc----------------EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEee
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTD----------------VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                      .  ....+..++|+|++.++++++.+                +++|+....+.+..+.+|...|.+++|+|++++|++++
T Consensus       257 ~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  334 (369)
T 3zwl_B          257 E--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG  334 (369)
T ss_dssp             E--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             c--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc
Confidence            5  44569999999999999998753                56677777788888999999999999999999999999


Q ss_pred             cCCeEEEeeC
Q psy12456        153 MDRTLKLYSL  162 (162)
Q Consensus       153 ~D~~i~iw~~  162 (162)
                      .|+.|++|++
T Consensus       335 ~dg~v~iw~~  344 (369)
T 3zwl_B          335 EDGFIRLHHF  344 (369)
T ss_dssp             TTSEEEEEEE
T ss_pred             CCCeEEEEEC
Confidence            9999999984

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.3e-28  Score=177.13  Aligned_cols=156  Identities=10%  Similarity=0.132  Sum_probs=127.5

Q ss_pred             CCCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCCeeeeeccC-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          7 GGPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQKNVTDFQL-DAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         7 ~~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      +...|++++++|  +++++++|+.||+|++||+++++.+..+.. +..++.+++|+|++.+|++|+.|+.|++||+++.+
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence            346799999999  999999999999999999999988776643 45689999999999999999999999999999877


Q ss_pred             ce-eEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEee---cCcccEE--EEEECCCCceEEEeec-CC
Q psy12456         84 NF-KTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFN---EHTAMVT--GVRFGTHAHYLASSSM-DR  155 (162)
Q Consensus        84 ~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~---~h~~~v~--~~~~s~~~~~l~s~s~-D~  155 (162)
                      .. ..+...+..+|.+++|+|++.++++++.+ +++|+.+..+.+..+.   .|...+.  +++|+|++++|++++. |+
T Consensus       204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~  283 (343)
T 3lrv_A          204 QASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN  283 (343)
T ss_dssp             SCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT
T ss_pred             CCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCC
Confidence            66 55655355689999999999999999865 8889887765544333   3445554  5999999999999998 99


Q ss_pred             eEEEeeC
Q psy12456        156 TLKLYSL  162 (162)
Q Consensus       156 ~i~iw~~  162 (162)
                      .+++|++
T Consensus       284 ~i~v~~~  290 (343)
T 3lrv_A          284 SLTIYKF  290 (343)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            9999973

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.96  E-value=4.4e-27  Score=168.95  Aligned_cols=157  Identities=15%  Similarity=0.227  Sum_probs=127.9

Q ss_pred             CCCCcEEEEEeCCC-CcEEEEeeCCCcEEEEECCCCe-----eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456          6 AGGPTLTTAQLHPD-GLIFGIGTSDSQVQIWDLKKQK-----NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus         6 ~~~~~v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      -|...|++++|+|+ +++||+|+.||+|+|||+++++     +...+.+|..+|.+++|+|++++|++++.|+.|++|+.
T Consensus        36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~  115 (340)
T 4aow_A           36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL  115 (340)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence            36779999999997 6899999999999999997643     56778899999999999999999999999999999997


Q ss_pred             ccCcceeEEe------------------------------------------eCCCCCeeEEEECCCC--CEEEEeccc-
Q psy12456         80 RKLKNFKTLQ------------------------------------------LDPNYEIRDLCFDQSG--TYMAVAGTD-  114 (162)
Q Consensus        80 ~~~~~~~~~~------------------------------------------~~~~~~v~~~~~~~~~--~~~~~~~~~-  114 (162)
                      ..........                                          ..+...+..++|++++  .++++++.| 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~  195 (340)
T 4aow_A          116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK  195 (340)
T ss_dssp             TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTS
T ss_pred             cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCC
Confidence            5432211111                                          0122346677777653  566777666 


Q ss_pred             -EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        115 -VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       115 -~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                       +++|+....+.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus       196 ~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~  244 (340)
T 4aow_A          196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL  244 (340)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             EEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEe
Confidence             778888888888889999999999999999999999999999999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=1.3e-27  Score=174.93  Aligned_cols=155  Identities=20%  Similarity=0.275  Sum_probs=134.7

Q ss_pred             CCCCcEEEEEeCCCC-cEEEEeeCCCcEEEEECCCCeeeeecc--CCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHPDG-LIFGIGTSDSQVQIWDLKKQKNVTDFQ--LDAGPIQALSFSE-NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g-~~~a~g~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      .+...|++++|+|++ +++++|+.||.|++||+++++....+.  .|..+|.+++|+| ++++|++++.|+.|++||++.
T Consensus        71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  150 (383)
T 3ei3_B           71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG  150 (383)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS
T ss_pred             CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC
Confidence            467889999999999 999999999999999999887776665  5889999999999 789999999999999999985


Q ss_pred             CcceeEEeeCC--CCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCc-eEEEeecCCe
Q psy12456         82 LKNFKTLQLDP--NYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH-YLASSSMDRT  156 (162)
Q Consensus        82 ~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~  156 (162)
                       +....+..+.  ...+.+++|+|++.++++++.+  +++|+. ..+.+..+..|...|.+++|+|+++ ++++++.|+.
T Consensus       151 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~  228 (383)
T 3ei3_B          151 -SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT  228 (383)
T ss_dssp             -CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             -CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE
Confidence             4444444333  2569999999999999999987  667776 4567788899999999999999999 8999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      |++||+
T Consensus       229 i~iwd~  234 (383)
T 3ei3_B          229 VKLWDL  234 (383)
T ss_dssp             EEEEEG
T ss_pred             EEEEeC
Confidence            999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.96  E-value=4.5e-27  Score=167.48  Aligned_cols=157  Identities=18%  Similarity=0.362  Sum_probs=126.8

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc--------------------------------------
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ--------------------------------------   47 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~--------------------------------------   47 (162)
                      .++..|++++|+|+|+++|+|+.||+|++||+++++.+..+.                                      
T Consensus        65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~  144 (318)
T 4ggc_A           65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA  144 (318)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEE
Confidence            466789999999999999999999999999999887655443                                      


Q ss_pred             ---CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce----e----------EEe---------------------
Q psy12456         48 ---LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF----K----------TLQ---------------------   89 (162)
Q Consensus        48 ---~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~----~----------~~~---------------------   89 (162)
                         .|...+..++++++++++++++.|++|++||+++.+..    .          ...                     
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~  224 (318)
T 4ggc_A          145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR  224 (318)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred             EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence               34456777888889999999999999999998753311    0          000                     


Q ss_pred             ------------eCCCCCeeEEEECCCCCEEEEec--cc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeec
Q psy12456         90 ------------LDPNYEIRDLCFDQSGTYMAVAG--TD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        90 ------------~~~~~~v~~~~~~~~~~~~~~~~--~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                                  ..+...+..++|+|++..+++++  .|  +++|+..+.+.+..+.+|...|++++|+|++++|+|||.
T Consensus       225 lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~  304 (318)
T 4ggc_A          225 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA  304 (318)
T ss_dssp             EEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred             EEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence                        00122366778888888777654  33  889998889999999999999999999999999999999


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      |++|++||+
T Consensus       305 D~~v~iWd~  313 (318)
T 4ggc_A          305 DETLRLWRC  313 (318)
T ss_dssp             TTEEEEECC
T ss_pred             CCeEEEEEC
Confidence            999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=8.2e-28  Score=190.36  Aligned_cols=156  Identities=19%  Similarity=0.337  Sum_probs=142.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|++++|+|+|.++|+|+.||.|+|||+++++.+..+..|..+|.+++|+|++++|++++.|+.|++||+.+.+..
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~   90 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV   90 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc-eEEEEeecCcccEEEEEECC-CCceEEEeecCCeEEEee
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW-QELAMFNEHTAMVTGVRFGT-HAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iw~  161 (162)
                      ..+..+ ...+.+++|+|++.++++++.|  +++|++... .....+.+|...|.+++|+| +++.+++++.|++|++||
T Consensus        91 ~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd  169 (814)
T 3mkq_A           91 VDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS  169 (814)
T ss_dssp             EEEECC-SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred             EEEecC-CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            777654 4579999999999999999887  778887664 66778889999999999999 889999999999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       170 ~  170 (814)
T 3mkq_A          170 L  170 (814)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-27  Score=173.87  Aligned_cols=157  Identities=17%  Similarity=0.305  Sum_probs=135.1

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECC--CCeeeeeccCCCCCEEEEEEccC--CCEEEEEeCCCeEEEEEcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK--KQKNVTDFQLDAGPIQALSFSEN--GYYLATAADENCVKLWDLR   80 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~d~~v~~wd~~   80 (162)
                      ..|...|++++|+|++++||+|+.||.|++||++  +.+.+..+..|..+|.+++|+++  +++|++++.|+.|++||++
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   87 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   87 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence            4577899999999999999999999999999998  55777888999999999999976  9999999999999999998


Q ss_pred             cCc--ceeEEeeCCCCCeeEEEECCC--CCEEEEeccc--EEEEEeCCc--eEEEEeecCcccEEEEEECC---------
Q psy12456         81 KLK--NFKTLQLDPNYEIRDLCFDQS--GTYMAVAGTD--VRVFLCKQW--QELAMFNEHTAMVTGVRFGT---------  143 (162)
Q Consensus        81 ~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~--~~i~~~~~~--~~~~~~~~h~~~v~~~~~s~---------  143 (162)
                      +.+  ....+.. +...+.+++|+|+  +.++++++.+  +++|+....  .....+..|...|.+++|+|         
T Consensus        88 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  166 (379)
T 3jrp_A           88 NGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH  166 (379)
T ss_dssp             TTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred             CCceeEeeeecC-CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence            765  3333333 4567999999999  9999999887  777877654  23445678999999999999         


Q ss_pred             ----CCceEEEeecCCeEEEeeC
Q psy12456        144 ----HAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       144 ----~~~~l~s~s~D~~i~iw~~  162 (162)
                          ++.++++++.|+.|++||+
T Consensus       167 ~~~~~~~~l~~~~~dg~i~i~d~  189 (379)
T 3jrp_A          167 NGTKESRKFVTGGADNLVKIWKY  189 (379)
T ss_dssp             ---CTTCEEEEEETTSCEEEEEE
T ss_pred             cCCCCCCEEEEEeCCCeEEEEEe
Confidence                6999999999999999984

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.4e-28  Score=175.98  Aligned_cols=152  Identities=13%  Similarity=0.081  Sum_probs=115.1

Q ss_pred             CcEEEEEeCC---CCcEEEEeeCCCcEEEEECCCCeeeeeccCCC---CCEEEEEEccCCCEE------------EEEeC
Q psy12456          9 PTLTTAQLHP---DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA---GPIQALSFSENGYYL------------ATAAD   70 (162)
Q Consensus         9 ~~v~~~~~~~---~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~---~~v~~i~~~~~~~~l------------~s~~~   70 (162)
                      ..++.++|+|   ++.++|+|+.|++|+|||+++++.++++..|.   ..+.+++|+|++.++            ++|+.
T Consensus       179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~  258 (356)
T 2w18_A          179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP  258 (356)
T ss_dssp             CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred             CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence            3444555555   55778899999999999999999999998654   367778999999876            56888


Q ss_pred             CCeEEEEEcccCcceeEEee----CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEE-EEEECC
Q psy12456         71 ENCVKLWDLRKLKNFKTLQL----DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVT-GVRFGT  143 (162)
Q Consensus        71 d~~v~~wd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~-~~~~s~  143 (162)
                      |+++++||..+.+.+..+..    .+...+.+..  .++.++++++.|  ++||++.+.+.+..+.+|...+. .++|+|
T Consensus       259 D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~--~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSP  336 (356)
T 2w18_A          259 VFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD--VKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSG  336 (356)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE--EETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECS
T ss_pred             CcEEEEEECCCCEEEEEEEeeccCCCcceeEccc--cCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECC
Confidence            99999999987766554421    1222233333  337788998877  89999999999999999987655 589999


Q ss_pred             CCceEEEeecCCeEEEeeC
Q psy12456        144 HAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       144 ~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++++|++|+.|++||+||+
T Consensus       337 DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          337 TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             SSSEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEEECCCcEEEecC
Confidence            9999999999999999984

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=2e-27  Score=195.59  Aligned_cols=156  Identities=22%  Similarity=0.317  Sum_probs=144.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .|...|++++|+|+|+++|+|+.||+|++||+.+++.+..+..|..+|.+++|+|++++|++++.|++|++||+.+.+.+
T Consensus       613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~  692 (1249)
T 3sfz_A          613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV  692 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             eEEeeCCCCCeeEEEECC--CCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 KTLQLDPNYEIRDLCFDQ--SGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..+..+ ...+.+++|+|  ++.++++++.|  +++|+....+.+..+.+|...|.+++|+|+++++++++.|++|++||
T Consensus       693 ~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd  771 (1249)
T 3sfz_A          693 HTYDEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD  771 (1249)
T ss_dssp             EEEECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred             EEEcCC-CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEe
Confidence            777654 55799999999  56688888877  88898888888888999999999999999999999999999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       772 ~  772 (1249)
T 3sfz_A          772 V  772 (1249)
T ss_dssp             G
T ss_pred             C
Confidence            4

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=9.4e-27  Score=166.73  Aligned_cols=154  Identities=23%  Similarity=0.374  Sum_probs=137.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|++++|+|+++++++++.||.|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|++||+++.+..
T Consensus       139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceE
Confidence            45677999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+.  +...+.+++|+|++.++++++.+  +++|+....+. ..+..|...|.+++|+|+++++++++.|+.|++|++
T Consensus       219 ~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~  294 (337)
T 1gxr_A          219 QQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             EEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             eeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence            6554  34569999999999999999876  77787766543 457789999999999999999999999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=3.4e-27  Score=185.01  Aligned_cols=155  Identities=17%  Similarity=0.338  Sum_probs=134.2

Q ss_pred             CCCCcEEEEEeCCCC--cEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDG--LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g--~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .|...|++++|+|++  .++++|+.||+|++||+++++....+..|.+.|.+++|+|++++|++++.|++|++||+++.+
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~  594 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK  594 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence            466789999999987  589999999999999999999999999999999999999999999999999999999998877


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecC-------------------cccEEEEEECC
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEH-------------------TAMVTGVRFGT  143 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h-------------------~~~v~~~~~s~  143 (162)
                      .+..+.  ....+.+++|+|++.++++++.+ +++|+......+..+..+                   ...+++++|+|
T Consensus       595 ~~~~~~--~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp  672 (694)
T 3dm0_A          595 KLYSLE--ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA  672 (694)
T ss_dssp             EEECCB--CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT
T ss_pred             eEEEec--CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC
Confidence            655443  34569999999999999887665 899998877666555432                   22478999999


Q ss_pred             CCceEEEeecCCeEEEeeC
Q psy12456        144 HAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       144 ~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++++|++|+.|++|++|++
T Consensus       673 dg~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          673 DGSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             TSSEEEEEETTSEEEEEEC
T ss_pred             CCCEEEEEcCCCeEEEEec
Confidence            9999999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=9e-28  Score=178.51  Aligned_cols=156  Identities=15%  Similarity=0.304  Sum_probs=128.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-----------eeeeccCCC------------CCEEEEEEccCC
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-----------NVTDFQLDA------------GPIQALSFSENG   62 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-----------~~~~~~~~~------------~~v~~i~~~~~~   62 (162)
                      ++...|++++|+|+|++||+|+.||.|+|||+.+++           ....+.+|.            .+|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            356789999999999999999999999999998776           477888998            889999999998


Q ss_pred             --CEEEEEeCCCeEEEEEcccCcce---------------------------------------eEEeeCCCCCeeEEEE
Q psy12456         63 --YYLATAADENCVKLWDLRKLKNF---------------------------------------KTLQLDPNYEIRDLCF  101 (162)
Q Consensus        63 --~~l~s~~~d~~v~~wd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~  101 (162)
                        .+|++++.|++|++||+...+..                                       ..+...+...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              89999999999999998653221                                       1122235667999999


Q ss_pred             CCCCCEEEEeccc--EEEEEeCC-ceEEE-------EeecCcccEEEEEECCCC-ceEEEeecCCeEEEeeC
Q psy12456        102 DQSGTYMAVAGTD--VRVFLCKQ-WQELA-------MFNEHTAMVTGVRFGTHA-HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       102 ~~~~~~~~~~~~~--~~i~~~~~-~~~~~-------~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iw~~  162 (162)
                      +|++.+++++ .|  +++|+... .+.+.       .+..|...|.+++|+|++ ++|++++.|+.|++||+
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~  256 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM  256 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence            9999999998 56  77777663 23333       256899999999999998 99999999999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=4.8e-27  Score=168.23  Aligned_cols=155  Identities=15%  Similarity=0.238  Sum_probs=133.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeee---eecc--CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV---TDFQ--LDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~---~~~~--~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      .+...|++++|+|+++++++++ ||.|++||+++++..   ..+.  .|..+|.+++|+|++++|++++.|+.|++||++
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~  127 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            4678899999999999999999 999999999876533   3333  688899999999999999999999999999998


Q ss_pred             cCcc--eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         81 KLKN--FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        81 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      +.+.  ...+.. +...+.+++|+|++.++++++.+  +++|+....+.+..+..|...|.+++|+|+++++++++.|+.
T Consensus       128 ~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  206 (337)
T 1gxr_A          128 APTPRIKAELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             CC--EEEEEEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCcceeeeccc-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc
Confidence            7653  333333 44569999999999999999876  788888888888889999999999999999999999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      |++||+
T Consensus       207 i~~~d~  212 (337)
T 1gxr_A          207 VRSWDL  212 (337)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-27  Score=174.57  Aligned_cols=155  Identities=14%  Similarity=0.198  Sum_probs=140.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|++++|+|+++++++++.||.|++||+++++.+..+..|..+|.+++|+|++ ++++++.|+.|++||+++.+.+
T Consensus       245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~  323 (425)
T 1r5m_A          245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL  323 (425)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe
Confidence            467789999999999999999999999999999999999999999999999999999 9999999999999999887777


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCce--------------------EEEEeecCcc--cEEEEEE
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ--------------------ELAMFNEHTA--MVTGVRF  141 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~--------------------~~~~~~~h~~--~v~~~~~  141 (162)
                      ..+..+ ...+.+++|+|++.++++++.+  +++|+....+                    .+..+..|..  .|.+++|
T Consensus       324 ~~~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  402 (425)
T 1r5m_A          324 ALSIVD-GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW  402 (425)
T ss_dssp             EEEECT-TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE
T ss_pred             EecccC-CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc
Confidence            666653 4579999999999999999877  7888876666                    7788899976  9999999


Q ss_pred             CCCCceEEEeecCCeEEEeeC
Q psy12456        142 GTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       142 s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +|++++|++++.|+.|++|++
T Consensus       403 s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          403 NCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             CTTSSEEEEEESSSCCEEEEC
T ss_pred             cCCCceEEEEecCceEEEEee
Confidence            999999999999999999996

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=7.9e-27  Score=169.46  Aligned_cols=157  Identities=15%  Similarity=0.172  Sum_probs=135.0

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+...|++++|+|+++++++++.||.|++||+++++....  +..|..+|.+++|+|++++|++++.|+.|++||++..+
T Consensus        50 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~  129 (372)
T 1k8k_C           50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN  129 (372)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred             CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCC
Confidence            4677899999999999999999999999999988875444  45688899999999999999999999999999998765


Q ss_pred             c---eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeC------------------CceEEEEeecCcccEEEEE
Q psy12456         84 N---FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCK------------------QWQELAMFNEHTAMVTGVR  140 (162)
Q Consensus        84 ~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~------------------~~~~~~~~~~h~~~v~~~~  140 (162)
                      .   .......+...+.+++|+|++.++++++.+  +++|+..                  ..+.+..+..|...|.+++
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  209 (372)
T 1k8k_C          130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC  209 (372)
T ss_dssp             TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred             cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEE
Confidence            3   233333445679999999999999999877  7778742                  4567788889999999999


Q ss_pred             ECCCCceEEEeecCCeEEEeeC
Q psy12456        141 FGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       141 ~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      |+|++++|++++.|+.|++||+
T Consensus       210 ~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          210 FSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             ECSSSSEEEEEETTTEEEEEEG
T ss_pred             ECCCCCEEEEEeCCCEEEEEEC
Confidence            9999999999999999999985

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=2.9e-27  Score=174.69  Aligned_cols=153  Identities=18%  Similarity=0.281  Sum_probs=132.9

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ..+....++|+++++++|+.||.|++||+++++....+..|..+|.+++|+|++++|++++.|++|++||+++.+.+..+
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  177 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL  177 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence            44556678999999999999999999999999999999999999999999999999999999999999999988777777


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeec---CcccE---------------------EEEEEC
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE---HTAMV---------------------TGVRFG  142 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~---h~~~v---------------------~~~~~s  142 (162)
                      .. +...|.+++|+|++.++++++.|  +++|+....+.+..+..   |...|                     .+++|+
T Consensus       178 ~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          178 IG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             EC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             cC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence            65 45579999999999999999887  88898888888777764   33344                     445568


Q ss_pred             CCCceEEEeecCCeEEEeeC
Q psy12456        143 THAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       143 ~~~~~l~s~s~D~~i~iw~~  162 (162)
                      |+++++++++.|+.|++||+
T Consensus       257 ~~~~~l~~~~~dg~i~i~d~  276 (420)
T 3vl1_A          257 TYGKYVIAGHVSGVITVHNV  276 (420)
T ss_dssp             CTTEEEEEEETTSCEEEEET
T ss_pred             CCCCEEEEEcCCCeEEEEEC
Confidence            89999999999999999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.8e-26  Score=167.64  Aligned_cols=157  Identities=15%  Similarity=0.262  Sum_probs=135.0

Q ss_pred             CCCCcEEEEEeCCC--CcEEEEeeCCCcEEEEECCCCe--eeeeccCCCCCEEEEEEccC--CCEEEEEeCCCeEEEEEc
Q psy12456          6 AGGPTLTTAQLHPD--GLIFGIGTSDSQVQIWDLKKQK--NVTDFQLDAGPIQALSFSEN--GYYLATAADENCVKLWDL   79 (162)
Q Consensus         6 ~~~~~v~~~~~~~~--g~~~a~g~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~d~~v~~wd~   79 (162)
                      .+...|++++|+|+  +++|++|+.||.|++||+++++  .+..+..|..+|.+++|+|+  +.++++++.|+.|++||+
T Consensus        53 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~  132 (379)
T 3jrp_A           53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF  132 (379)
T ss_dssp             CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred             CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEec
Confidence            46788999999987  9999999999999999999987  77788889999999999999  999999999999999999


Q ss_pred             ccCcceeEE-eeCCCCCeeEEEECC-------------CCCEEEEeccc--EEEEEeCCc----eEEEEeecCcccEEEE
Q psy12456         80 RKLKNFKTL-QLDPNYEIRDLCFDQ-------------SGTYMAVAGTD--VRVFLCKQW----QELAMFNEHTAMVTGV  139 (162)
Q Consensus        80 ~~~~~~~~~-~~~~~~~v~~~~~~~-------------~~~~~~~~~~~--~~i~~~~~~----~~~~~~~~h~~~v~~~  139 (162)
                      +........ ...+...+.+++|+|             ++.++++++.|  +++|+.+..    ..+..+.+|...|.++
T Consensus       133 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~  212 (379)
T 3jrp_A          133 KENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV  212 (379)
T ss_dssp             CTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred             CCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence            876432222 223456799999999             68999999877  788877543    3556788999999999


Q ss_pred             EECCC---CceEEEeecCCeEEEeeC
Q psy12456        140 RFGTH---AHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       140 ~~s~~---~~~l~s~s~D~~i~iw~~  162 (162)
                      +|+|+   +++|++++.|+.|++||+
T Consensus       213 ~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          213 AWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             EECCCCCCCCeEEEEeCCCEEEEEeC
Confidence            99999   899999999999999984

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.6e-26  Score=170.58  Aligned_cols=155  Identities=15%  Similarity=0.267  Sum_probs=134.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCC-CEEEEEe--CCCeEEEEEcccC
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENG-YYLATAA--DENCVKLWDLRKL   82 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~--~d~~v~~wd~~~~   82 (162)
                      .+...|++++|+|+++++++|+.||.|++||+++++++..+..|..+|.+++|+|++ .++++++  .|+.|++||+++.
T Consensus       215 ~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence            467789999999999999999999999999999999999999999999999999965 5666655  7999999999987


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCCEEEEec--cc--EEEEEeCCce--EEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGTYMAVAG--TD--VRVFLCKQWQ--ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~--~~i~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      +....+.  +...+.+++|+|++.++++++  .+  +++|+....+  ....+.+|...|.+++|+|+++++++++.|+.
T Consensus       295 ~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~  372 (401)
T 4aez_A          295 ARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN  372 (401)
T ss_dssp             CEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred             CEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            7776664  345699999999999999943  44  7788877643  34457799999999999999999999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      |++|++
T Consensus       373 i~iw~~  378 (401)
T 4aez_A          373 LKFWRV  378 (401)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.3e-27  Score=173.29  Aligned_cols=157  Identities=20%  Similarity=0.345  Sum_probs=138.1

Q ss_pred             CCCCcEEEEEeCCC-CcEEEEeeCCCcEEEEECCCCeeeeeccCC------CCCEEEEEEccCC-CEEEEEeCCC---eE
Q psy12456          6 AGGPTLTTAQLHPD-GLIFGIGTSDSQVQIWDLKKQKNVTDFQLD------AGPIQALSFSENG-YYLATAADEN---CV   74 (162)
Q Consensus         6 ~~~~~v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~------~~~v~~i~~~~~~-~~l~s~~~d~---~v   74 (162)
                      .+...|++++|+|+ +.++++++.||.|++||+++++.+..+..+      ..+|.+++|+|++ .++++++.|+   .|
T Consensus       163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i  242 (416)
T 2pm9_A          163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI  242 (416)
T ss_dssp             CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred             CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence            46778999999998 789999999999999999999999888876      7889999999986 6999999998   99


Q ss_pred             EEEEcccC-cceeEEeeCCCCCeeEEEECC-CCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCC-ceEE
Q psy12456         75 KLWDLRKL-KNFKTLQLDPNYEIRDLCFDQ-SGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHA-HYLA  149 (162)
Q Consensus        75 ~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~  149 (162)
                      ++||+++. +....+...+...+.+++|+| ++.++++++.|  +++|+....+.+..+..|...|.+++|+|++ ++++
T Consensus       243 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~  322 (416)
T 2pm9_A          243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA  322 (416)
T ss_dssp             CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEE
T ss_pred             EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEE
Confidence            99999875 344444413456799999999 89999999887  7778877888899999999999999999998 8999


Q ss_pred             EeecCCeEEEeeC
Q psy12456        150 SSSMDRTLKLYSL  162 (162)
Q Consensus       150 s~s~D~~i~iw~~  162 (162)
                      +++.|+.|++|++
T Consensus       323 s~~~d~~i~iw~~  335 (416)
T 2pm9_A          323 CASFDNKIEVQTL  335 (416)
T ss_dssp             ECCSSSEEEEEES
T ss_pred             EEecCCcEEEEEc
Confidence            9999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.96  E-value=1.4e-26  Score=167.51  Aligned_cols=114  Identities=15%  Similarity=0.374  Sum_probs=97.9

Q ss_pred             CCCCCcEEEEEeCCC---CcEEEEeeCCCcEEEEECCC-Ceee-eeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456          5 GAGGPTLTTAQLHPD---GLIFGIGTSDSQVQIWDLKK-QKNV-TDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~---g~~~a~g~~dg~i~~wd~~~-~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      ..|...|++++|+|+   |++|++|+.||.|++||+++ ++.+ ..+..|..+|.+++|+|++++|++++.|+.|++||+
T Consensus        36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~  115 (368)
T 3mmy_A           36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDL  115 (368)
T ss_dssp             SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence            467889999999999   69999999999999999987 5444 778889999999999999999999999999999999


Q ss_pred             ccCcceeEEeeCCCCCeeEEEE--CCCCCEEEEeccc--EEEEEe
Q psy12456         80 RKLKNFKTLQLDPNYEIRDLCF--DQSGTYMAVAGTD--VRVFLC  120 (162)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~--~~i~~~  120 (162)
                      ++.+.....  .+...+.+++|  +|++.++++++.|  +++|+.
T Consensus       116 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A          116 SSNQAIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             TTTEEEEEE--ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             CCCCceeec--cccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            876655432  24567999999  9999999999877  566654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.2e-26  Score=172.55  Aligned_cols=157  Identities=11%  Similarity=0.232  Sum_probs=128.8

Q ss_pred             CCCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCC---Ce---eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q psy12456          5 GAGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKK---QK---NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW   77 (162)
Q Consensus         5 ~~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~---~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~w   77 (162)
                      ..|...|++++|+| ++++|++|+.||+|+|||+++   +.   ....+ .|..+|.+++|+|++.+|++++.|++|++|
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw  138 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL  138 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence            45678999999999 999999999999999999976   43   23333 488999999999999999999999999999


Q ss_pred             Ecc---cCcceeEEe--------eC---CCCCeeEEE--ECCCCCEEEEeccc--EEEEEeCCceEEEEeec--CcccEE
Q psy12456         78 DLR---KLKNFKTLQ--------LD---PNYEIRDLC--FDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE--HTAMVT  137 (162)
Q Consensus        78 d~~---~~~~~~~~~--------~~---~~~~v~~~~--~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~--h~~~v~  137 (162)
                      |+.   ..+......        ..   ....+.++.  +++++.++++++.|  +++|+.+..+.+..+..  |...|.
T Consensus       139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~  218 (437)
T 3gre_A          139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVS  218 (437)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred             EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence            994   333222221        11   223355555  56889999999887  78888888888888887  899999


Q ss_pred             EEEECCCCceEEEeecCCeEEEeeC
Q psy12456        138 GVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       138 ~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +++|+|++++|++++.|+.|++||+
T Consensus       219 ~~~~s~~~~~l~s~~~dg~i~iwd~  243 (437)
T 3gre_A          219 SICIDEECCVLILGTTRGIIDIWDI  243 (437)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEET
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEEc
Confidence            9999999999999999999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=3.9e-26  Score=165.14  Aligned_cols=156  Identities=15%  Similarity=0.215  Sum_probs=134.3

Q ss_pred             CCCCcEEEEEeCCC----CcEEEEeeCCCcEEEEECCCCeeeeeccC-----CCCCEEEEEEccC----CCEEEEEeCCC
Q psy12456          6 AGGPTLTTAQLHPD----GLIFGIGTSDSQVQIWDLKKQKNVTDFQL-----DAGPIQALSFSEN----GYYLATAADEN   72 (162)
Q Consensus         6 ~~~~~v~~~~~~~~----g~~~a~g~~dg~i~~wd~~~~~~~~~~~~-----~~~~v~~i~~~~~----~~~l~s~~~d~   72 (162)
                      .|...|++++|+|+    ..++++++.++.|++||+.+++.+..+..     |...|.+++|+|+    +.+|++|+.|+
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg   95 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG   95 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence            57889999999984    44566666677999999998877666543     5578999999998    67999999999


Q ss_pred             eEEEEEcccCcceeEEeeCCCCCeeEEEECC-CCCEEEEeccc--EEEEEeCCceEEEEe---ecCcccEEEEEECCCCc
Q psy12456         73 CVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQ-SGTYMAVAGTD--VRVFLCKQWQELAMF---NEHTAMVTGVRFGTHAH  146 (162)
Q Consensus        73 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~--~~i~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~  146 (162)
                      .|++||+.+.+.+..+.. +...|.+++|+| ++.++++++.|  +++|+....+.+..+   ..|...|.+++|+|+++
T Consensus        96 ~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  174 (366)
T 3k26_A           96 IIRIINPITMQCIKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE  174 (366)
T ss_dssp             EEEEECTTTCCEEEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS
T ss_pred             EEEEEEchhceEeeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC
Confidence            999999998887777764 455799999999 89999999877  888888888888777   68999999999999999


Q ss_pred             eEEEeecCCeEEEeeC
Q psy12456        147 YLASSSMDRTLKLYSL  162 (162)
Q Consensus       147 ~l~s~s~D~~i~iw~~  162 (162)
                      +|++++.|+.|++||+
T Consensus       175 ~l~~~~~dg~i~i~d~  190 (366)
T 3k26_A          175 KIMSCGMDHSLKLWRI  190 (366)
T ss_dssp             EEEEEETTSCEEEEES
T ss_pred             EEEEecCCCCEEEEEC
Confidence            9999999999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=4.6e-27  Score=174.68  Aligned_cols=157  Identities=15%  Similarity=0.257  Sum_probs=130.1

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC-Ceeee-------eccCCCCCEEEEEEccCC-CEEEEEeCCCeEE
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK-QKNVT-------DFQLDAGPIQALSFSENG-YYLATAADENCVK   75 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~-~~~~~-------~~~~~~~~v~~i~~~~~~-~~l~s~~~d~~v~   75 (162)
                      ..+...|++++|+|++++|++| .||.|++||+++ ++.+.       .+..|...|.+++|+|++ ++|++|+.|++|+
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence            4577889999999999999999 799999999984 44444       366889999999999998 9999999999999


Q ss_pred             EEEcccCcc----eeEEeeCCC-----------CCeeEEEECCCCCEEEEeccc-EEEEEeCC-ceEEEEeecCccc---
Q psy12456         76 LWDLRKLKN----FKTLQLDPN-----------YEIRDLCFDQSGTYMAVAGTD-VRVFLCKQ-WQELAMFNEHTAM---  135 (162)
Q Consensus        76 ~wd~~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~-~~~~~~~~~h~~~---  135 (162)
                      +||+++.+.    ...+..+..           ..+.+++|+|++.++++++.. +++|+... .+.+..+..|...   
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~  332 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSK  332 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTT
T ss_pred             EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccccc
Confidence            999987665    455554332           279999999999999998764 77888775 6677778888642   


Q ss_pred             ------------EEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        136 ------------VTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       136 ------------v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                                  +..++|+|++++|++++.|+.|++||+
T Consensus       333 l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~  371 (447)
T 3dw8_B          333 LCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDR  371 (447)
T ss_dssp             HHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEET
T ss_pred             ccccccccccccceEEEECCCCCEEEEeccCCEEEEEEc
Confidence                        234899999999999999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=2.1e-27  Score=177.22  Aligned_cols=155  Identities=15%  Similarity=0.202  Sum_probs=126.1

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccC--CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQL--DAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      .|...|++++|+| ++++|++|+.||+|++||++++........  +...+.+++|+|++.+|++|+.|+.|++||++. 
T Consensus       162 gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-  240 (435)
T 4e54_B          162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-  240 (435)
T ss_dssp             SSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-
Confidence            3677899999998 789999999999999999987654333332  345678899999999999999999999999975 


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCC-EEEEeccc--EEEEEeCCceEE---EEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQWQEL---AMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      +.+..+.. +...|.+++|+|++. ++++++.|  +++|+.+..+..   ....+|...|++++|+|++++|++++.|+.
T Consensus       241 ~~~~~~~~-h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~  319 (435)
T 4e54_B          241 KELWNLRM-HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE  319 (435)
T ss_dssp             CBCCCSBC-CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC
T ss_pred             ceeEEEec-ccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE
Confidence            33444444 345799999999876 77788776  788887654432   334679999999999999999999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      |++||+
T Consensus       320 i~iwd~  325 (435)
T 4e54_B          320 IRVYSA  325 (435)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            999985

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=5.4e-26  Score=166.42  Aligned_cols=153  Identities=15%  Similarity=0.172  Sum_probs=129.9

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCC---CCCEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLD---AGPIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~---~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      .+...|++++|+| +++++++++.||.|++||+++ +.+..+..+   ..+|.+++|+|++++|++++.|+.|++||++ 
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-  193 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-  193 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-
Confidence            4778999999999 789999999999999999986 445555443   4789999999999999999999999999995 


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCC-EEEEeccc--EEEEEeCC----ceEEEEeecCcccEEEEEECC-CCceEEEeec
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQ----WQELAMFNEHTAMVTGVRFGT-HAHYLASSSM  153 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~----~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~  153 (162)
                      .+.+..+.. +...+.+++|+|++. ++++++.|  +++|+...    ...+..+ +|...|.+++|+| ++++|++++.
T Consensus       194 ~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~  271 (383)
T 3ei3_B          194 GHEIFKEKL-HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ  271 (383)
T ss_dssp             SCEEEEEEC-SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred             CCEEEEecc-CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence            455556654 445799999999998 89999887  78888765    4455555 6999999999999 9999999999


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      |+.|++||+
T Consensus       272 d~~i~iwd~  280 (383)
T 3ei3_B          272 RNEIRVYSS  280 (383)
T ss_dssp             SSEEEEEET
T ss_pred             CCcEEEEEC
Confidence            999999985

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=3.4e-27  Score=170.75  Aligned_cols=154  Identities=14%  Similarity=0.234  Sum_probs=133.2

Q ss_pred             CCCcEEEEEeCCC----CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEccc
Q psy12456          7 GGPTLTTAQLHPD----GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         7 ~~~~v~~~~~~~~----g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      +...|++++|+|+    |.++++|+.||.|++||+++++.+..+..|..+|.+++|+| ++.+|++++.|+.|++||+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            5678999999999    77999999999999999999999999999999999999999 999999999999999999988


Q ss_pred             CcceeEEe--eCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEE----------------------------Ee
Q psy12456         82 LKNFKTLQ--LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELA----------------------------MF  129 (162)
Q Consensus        82 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~----------------------------~~  129 (162)
                      .+....+.  ..+...+.+++|+|++.++++++.|  +++|+....+.+.                            ..
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            77666552  2355679999999999999999877  7888876543322                            22


Q ss_pred             ecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       130 ~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..|...|.+++|+  ++++++++.|+.|++||+
T Consensus       228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~  258 (366)
T 3k26_A          228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKP  258 (366)
T ss_dssp             SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEE
T ss_pred             cCCcceEEEEEEc--CCEEEEEecCCEEEEEeC
Confidence            3499999999998  779999999999999984

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=2.9e-26  Score=165.49  Aligned_cols=155  Identities=13%  Similarity=0.159  Sum_probs=130.2

Q ss_pred             CCCcEEEEE----eCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc---CCCEEEEEeCCCeEEEEEc
Q psy12456          7 GGPTLTTAQ----LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE---NGYYLATAADENCVKLWDL   79 (162)
Q Consensus         7 ~~~~v~~~~----~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~---~~~~l~s~~~d~~v~~wd~   79 (162)
                      ....+.+++    |+|+++++++|+.||.|++||+++++.... ..|..+|.+++|+|   ++.++++++.|+.|++||+
T Consensus       163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          163 NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred             CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence            345788888    789999999999999999999999887554 45778999999999   9999999999999999999


Q ss_pred             ccCcceeEEe----eCCCCCeeEEEECCCCC-EEEEeccc--EEEEEeCCc-------------------eEEEEeecCc
Q psy12456         80 RKLKNFKTLQ----LDPNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQW-------------------QELAMFNEHT  133 (162)
Q Consensus        80 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~~-------------------~~~~~~~~h~  133 (162)
                      ++.+....+.    ..+...+.+++|+|++. ++++++.|  +++|+....                   +.+..+..|.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  321 (357)
T 3i2n_A          242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST  321 (357)
T ss_dssp             EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred             cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence            8765544433    13456799999999998 88888877  677776532                   4677788999


Q ss_pred             ccEEEEEECCCCceEE-EeecCCeEEEeeC
Q psy12456        134 AMVTGVRFGTHAHYLA-SSSMDRTLKLYSL  162 (162)
Q Consensus       134 ~~v~~~~~s~~~~~l~-s~s~D~~i~iw~~  162 (162)
                      ..|.+++|+|++++++ +++.|+.|++||+
T Consensus       322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~  351 (357)
T 3i2n_A          322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIV  351 (357)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             CCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence            9999999999999998 8999999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.95  E-value=3.6e-26  Score=169.76  Aligned_cols=155  Identities=15%  Similarity=0.314  Sum_probs=133.0

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe----eeeeccCCCCCEEEEEEccCC-CEEEE--EeCCCeEEEEE
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK----NVTDFQLDAGPIQALSFSENG-YYLAT--AADENCVKLWD   78 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~i~~~~~~-~~l~s--~~~d~~v~~wd   78 (162)
                      .+...+..+.++|+|+++++++.||.+++||.++++    .+..+..|...|.+++|+|++ ..+++  |+.|++|++||
T Consensus       228 ~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd  307 (420)
T 4gga_A          228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN  307 (420)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEE
T ss_pred             ccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEe
Confidence            466788999999999999999999999999998764    345667788999999999964 45555  45799999999


Q ss_pred             cccCcceeEEeeCCCCCeeEEEECCCCCEEEEec--cc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG--TD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      +++.+....+..+  ..+.++.|+|++..+++++  .|  +++|+..+.+.+..+.+|...|++++|+|++++|+||+.|
T Consensus       308 ~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D  385 (420)
T 4gga_A          308 VCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD  385 (420)
T ss_dssp             TTTTEEEEEEECS--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             CCccccceeeccc--cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecC
Confidence            9988776666543  3588999999999888764  33  8899998899999999999999999999999999999999


Q ss_pred             CeEEEeeC
Q psy12456        155 RTLKLYSL  162 (162)
Q Consensus       155 ~~i~iw~~  162 (162)
                      ++|++||+
T Consensus       386 ~tvriWdv  393 (420)
T 4gga_A          386 ETLRLWRC  393 (420)
T ss_dssp             TEEEEECC
T ss_pred             CeEEEEEC
Confidence            99999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=2e-26  Score=170.01  Aligned_cols=157  Identities=14%  Similarity=0.245  Sum_probs=132.4

Q ss_pred             CCCCcEEEEEeCCCC-cEEEEeeCCCcEEEEECCCCeeeeec--cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456          6 AGGPTLTTAQLHPDG-LIFGIGTSDSQVQIWDLKKQKNVTDF--QLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g-~~~a~g~~dg~i~~wd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      .+...|++++|+|++ +++++|+.||.|++||+++++.+..+  ..|...|.+++|+|++++|++++.|+.|++||+++.
T Consensus       129 ~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~  208 (402)
T 2aq5_A          129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG  208 (402)
T ss_dssp             CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred             CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence            467889999999998 69999999999999999999999999  789999999999999999999999999999999987


Q ss_pred             cceeEE-eeCCCCCeeEEEECCCCCEEEEe---ccc--EEEEEeCCceE-EEEe-ecCcccEEEEEECCCCceEE-Eeec
Q psy12456         83 KNFKTL-QLDPNYEIRDLCFDQSGTYMAVA---GTD--VRVFLCKQWQE-LAMF-NEHTAMVTGVRFGTHAHYLA-SSSM  153 (162)
Q Consensus        83 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~---~~~--~~i~~~~~~~~-~~~~-~~h~~~v~~~~~s~~~~~l~-s~s~  153 (162)
                      +.+..+ ..+....+.++.|+|++.+++++   +.+  +++|+....+. +... ..|...+..+.|+|++++++ +++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~  288 (402)
T 2aq5_A          209 TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKG  288 (402)
T ss_dssp             EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETT
T ss_pred             ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcC
Confidence            777766 44444448899999999999998   555  67777665432 2222 35777899999999999886 4557


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      |+.|++|++
T Consensus       289 dg~i~i~d~  297 (402)
T 2aq5_A          289 DSSIRYFEI  297 (402)
T ss_dssp             CSCEEEEEE
T ss_pred             CCeEEEEEe
Confidence            999999984

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=5e-26  Score=169.60  Aligned_cols=156  Identities=22%  Similarity=0.397  Sum_probs=133.7

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC---eeeeeccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ---KNVTDFQLDAGPIQALSFSENGY-YLATAADENCVKLWDLR   80 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~   80 (162)
                      .+...|++++|+| ++.+|++++.||.|++||++++   +++..+..|..+|++++|+|++. ++++|+.|++|++||++
T Consensus       229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~  308 (430)
T 2xyi_A          229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR  308 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCC
Confidence            5677899999999 7889999999999999999987   57778888999999999999886 78999999999999998


Q ss_pred             cC-cceeEEeeCCCCCeeEEEECCCCC-EEEEeccc--EEEEEeCC--------------ceEEEEeecCcccEEEEEEC
Q psy12456         81 KL-KNFKTLQLDPNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQ--------------WQELAMFNEHTAMVTGVRFG  142 (162)
Q Consensus        81 ~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~--------------~~~~~~~~~h~~~v~~~~~s  142 (162)
                      +. +.+..+.. +...+.+++|+|++. ++++++.+  +++|+...              .+.+..+.+|...|.+++|+
T Consensus       309 ~~~~~~~~~~~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  387 (430)
T 2xyi_A          309 NLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN  387 (430)
T ss_dssp             CTTSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEEC
T ss_pred             CCCCCeEEeec-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEEC
Confidence            74 34555554 455799999999985 67888766  78888765              24566778899999999999


Q ss_pred             CCCc-eEEEeecCCeEEEeeC
Q psy12456        143 THAH-YLASSSMDRTLKLYSL  162 (162)
Q Consensus       143 ~~~~-~l~s~s~D~~i~iw~~  162 (162)
                      |+++ ++++++.|+.|++|++
T Consensus       388 p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          388 PNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             SSSTTEEEEEETTSEEEEEEE
T ss_pred             CCCCCEEEEEECCCCEEEeEc
Confidence            9999 8899999999999984

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=9.4e-26  Score=166.53  Aligned_cols=153  Identities=20%  Similarity=0.342  Sum_probs=134.1

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC-cce
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL-KNF   85 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~-~~~   85 (162)
                      +...|++++|+|+++++++|+.||.|++||+++++.+..+..|...|.+++|  +++++++++.|+.|++||++.. ...
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~  210 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQI  210 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCccee
Confidence            6788999999999999999999999999999999999999999999999999  4579999999999999999843 344


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCc-eEEEee--cCCeEEEe
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH-YLASSS--MDRTLKLY  160 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s--~D~~i~iw  160 (162)
                      ..+.. +...+.+++|+|++.++++++.|  +++|+....+.+..+..|...|.+++|+|++. ++++++  .|+.|++|
T Consensus       211 ~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~  289 (401)
T 4aez_A          211 GTLQG-HSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW  289 (401)
T ss_dssp             EEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred             eEEcC-CCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence            44544 45679999999999999999876  88888888888888899999999999999765 556654  79999999


Q ss_pred             eC
Q psy12456        161 SL  162 (162)
Q Consensus       161 ~~  162 (162)
                      |+
T Consensus       290 d~  291 (401)
T 4aez_A          290 NA  291 (401)
T ss_dssp             ET
T ss_pred             EC
Confidence            85

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.5e-26  Score=171.94  Aligned_cols=154  Identities=14%  Similarity=0.124  Sum_probs=133.0

Q ss_pred             CCCcEEEEEeCCCCcEE-EEeeCCCcEEEEECC--CCeeeeecc--CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456          7 GGPTLTTAQLHPDGLIF-GIGTSDSQVQIWDLK--KQKNVTDFQ--LDAGPIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~-a~g~~dg~i~~wd~~--~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      +...|++++|+|+|++| ++|+.||.|++||++  +++.+..+.  .|...|.+++|+|++++|++++.|+.+.+|++.+
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~  180 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS  180 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence            34479999999999996 999999999999999  788887776  5668899999999999999999999999999976


Q ss_pred             Cccee----EEeeCCCCCeeEEEECCC---CCEEEEeccc--EEEEEeCCceEEEE-eecCcccEEEEEECCCCceEEEe
Q psy12456         82 LKNFK----TLQLDPNYEIRDLCFDQS---GTYMAVAGTD--VRVFLCKQWQELAM-FNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        82 ~~~~~----~~~~~~~~~v~~~~~~~~---~~~~~~~~~~--~~i~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      .+...    .+.. +...+.+++|+|+   +.++++++.|  +++|+....+.+.. +.+|...|.+++|+ ++++|+++
T Consensus       181 ~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~  258 (450)
T 2vdu_B          181 IPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA  258 (450)
T ss_dssp             CCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE
T ss_pred             cccccccceeeec-ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE
Confidence            55432    3343 3457999999999   9999999887  88888877766666 56899999999999 99999999


Q ss_pred             ecCCeEEEeeC
Q psy12456        152 SMDRTLKLYSL  162 (162)
Q Consensus       152 s~D~~i~iw~~  162 (162)
                      +.|+.|++||+
T Consensus       259 ~~d~~v~vwd~  269 (450)
T 2vdu_B          259 GGDDKIFAWDW  269 (450)
T ss_dssp             ESSSEEEEEET
T ss_pred             eCCCeEEEEEC
Confidence            99999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.1e-26  Score=168.33  Aligned_cols=149  Identities=13%  Similarity=0.164  Sum_probs=124.3

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECC---------CCeeeeecc-CCCCCEEEEEEcc--CCCEEEEEeCCCeEEEE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLK---------KQKNVTDFQ-LDAGPIQALSFSE--NGYYLATAADENCVKLW   77 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~---------~~~~~~~~~-~~~~~v~~i~~~~--~~~~l~s~~~d~~v~~w   77 (162)
                      .|+++.++|+   +++++.|+++++|+.+         +++.+..+. .|.++|.+++|+|  +++++++++.|++|++|
T Consensus        78 ~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~w  154 (343)
T 3lrv_A           78 NPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ  154 (343)
T ss_dssp             CCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEE
T ss_pred             CceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEE
Confidence            4566778887   8899999999999765         444454544 5668899999999  99999999999999999


Q ss_pred             EcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEE-EEeec-CcccEEEEEECCCCceEEEeec
Q psy12456         78 DLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQEL-AMFNE-HTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        78 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-~~~~~-h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                      |+++.+.......++...+.+++|+|++.++++|+.|  +++|+.+..+.+ ..+.. |..+|.+++|+|++.+|++++ 
T Consensus       155 d~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-  233 (343)
T 3lrv_A          155 SYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-  233 (343)
T ss_dssp             ESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-
T ss_pred             ECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-
Confidence            9998776555544555569999999999999999877  888988877666 67777 999999999999999999999 


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      |+.|++||+
T Consensus       234 ~~~v~iwd~  242 (343)
T 3lrv_A          234 DQTVVCFDL  242 (343)
T ss_dssp             SSBEEEEET
T ss_pred             CCeEEEEEc
Confidence            559999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=9.8e-26  Score=165.19  Aligned_cols=155  Identities=16%  Similarity=0.289  Sum_probs=134.6

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeecc-------------CCCCCEEEEEEcc-CCCEEEEEeC
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQ-------------LDAGPIQALSFSE-NGYYLATAAD   70 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~-------------~~~~~v~~i~~~~-~~~~l~s~~~   70 (162)
                      .|...|++++|+| +++++++|+.||.|++||+++++....+.             .|..+|.+++|+| ++.+|++++.
T Consensus        41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~  120 (408)
T 4a11_B           41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF  120 (408)
T ss_dssp             CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred             ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence            4788999999999 99999999999999999999876655443             5889999999999 7889999999


Q ss_pred             CCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCC---CEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCC
Q psy12456         71 ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSG---TYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHA  145 (162)
Q Consensus        71 d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~  145 (162)
                      |+.|++||+++.+....+.  ....+.+++++|.+   .++++++.+  +++|+....+.+..+..|...|.+++|+|++
T Consensus       121 d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  198 (408)
T 4a11_B          121 DKTLKVWDTNTLQTADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY  198 (408)
T ss_dssp             TSEEEEEETTTTEEEEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred             CCeEEEeeCCCCccceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence            9999999999877666655  34468889998854   489888876  8888888888888899999999999999999


Q ss_pred             c-eEEEeecCCeEEEeeC
Q psy12456        146 H-YLASSSMDRTLKLYSL  162 (162)
Q Consensus       146 ~-~l~s~s~D~~i~iw~~  162 (162)
                      + .+++++.|+.|++||+
T Consensus       199 ~~ll~~~~~dg~i~i~d~  216 (408)
T 4a11_B          199 DYILATASADSRVKLWDV  216 (408)
T ss_dssp             TTEEEEEETTSCEEEEET
T ss_pred             CcEEEEEcCCCcEEEEEC
Confidence            8 4899999999999985

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=3.1e-26  Score=167.87  Aligned_cols=154  Identities=15%  Similarity=0.262  Sum_probs=132.5

Q ss_pred             CCcEEEEEeC----CCCcE-EEEeeCCCcEEEEECCC------Ceeee-----ec-------cCCCCCEEEEEEccCCCE
Q psy12456          8 GPTLTTAQLH----PDGLI-FGIGTSDSQVQIWDLKK------QKNVT-----DF-------QLDAGPIQALSFSENGYY   64 (162)
Q Consensus         8 ~~~v~~~~~~----~~g~~-~a~g~~dg~i~~wd~~~------~~~~~-----~~-------~~~~~~v~~i~~~~~~~~   64 (162)
                      ...|++++|+    |++++ +++++.||.|++||+++      ++.+.     .+       ..|...|.+++|+|++ +
T Consensus       121 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~  199 (397)
T 1sq9_A          121 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L  199 (397)
T ss_dssp             GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred             CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence            5789999999    99999 99999999999999998      66665     66       4478899999999999 9


Q ss_pred             EEEEeCCCeEEEEEcccCcceeEEee---CC--CCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEEeec---
Q psy12456         65 LATAADENCVKLWDLRKLKNFKTLQL---DP--NYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAMFNE---  131 (162)
Q Consensus        65 l~s~~~d~~v~~wd~~~~~~~~~~~~---~~--~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~---  131 (162)
                      +++++.|+.|++||+++.+.+..+..   +.  ...+.+++|+|++.++++++.+     +++|+....+.+..+..   
T Consensus       200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~  279 (397)
T 1sq9_A          200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTH  279 (397)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--
T ss_pred             EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcc
Confidence            99999999999999998777776665   30  4579999999999999999876     56777777788888888   


Q ss_pred             ----------CcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        132 ----------HTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       132 ----------h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                                |...|.+++|+|++++|++++.|+.|++||+
T Consensus       280 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          280 SSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             ------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             cccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence                      9999999999999999999999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=3.1e-26  Score=175.91  Aligned_cols=153  Identities=16%  Similarity=0.172  Sum_probs=135.8

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeC-CCcEEEEECCCCeee-eeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      +...+++++++  ++++++++. ||.|++||+.+++.. ..+..|..+|.+++|+|++++|++++.|+.|++||+.+.+.
T Consensus       445 ~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~  522 (615)
T 1pgu_A          445 LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV  522 (615)
T ss_dssp             CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc
Confidence            45678889999  889999999 999999999887665 67788999999999999999999999999999999988777


Q ss_pred             eeEEeeCCCCCeeEEEECC----------CCCEEEEeccc--EEEEEeCCc-eEEEEeecCcccEEEEEECCCCceEEEe
Q psy12456         85 FKTLQLDPNYEIRDLCFDQ----------SGTYMAVAGTD--VRVFLCKQW-QELAMFNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~----------~~~~~~~~~~~--~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      +..+...+...+.+++|+|          ++.++++++.|  +++|+.... +.+..+.+|...|.+++|+|+++ |+++
T Consensus       523 ~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~  601 (615)
T 1pgu_A          523 KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS  601 (615)
T ss_dssp             EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEE
T ss_pred             eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEe
Confidence            6665542566799999999          99999999887  788888776 67888899999999999999999 9999


Q ss_pred             ecCCeEEEeeC
Q psy12456        152 SMDRTLKLYSL  162 (162)
Q Consensus       152 s~D~~i~iw~~  162 (162)
                      +.|+.|++|++
T Consensus       602 ~~d~~v~iw~~  612 (615)
T 1pgu_A          602 GADACIKRWNV  612 (615)
T ss_dssp             ETTSCEEEEEE
T ss_pred             cCCceEEEEee
Confidence            99999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.7e-27  Score=173.26  Aligned_cols=155  Identities=10%  Similarity=0.188  Sum_probs=131.7

Q ss_pred             CCCcEEEEE--eCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC--CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456          7 GGPTLTTAQ--LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL--DAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         7 ~~~~v~~~~--~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      +...+.++.  ++|++.++++|+.||.|++||+++++.+..+..  |..+|.+++|+|++++|++|+.|++|++||+++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  246 (437)
T 3gre_A          167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN  246 (437)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence            455666777  668999999999999999999999999999987  7899999999999999999999999999999987


Q ss_pred             cceeEEeeCCCCCeeEEEEC----CCCCEEEEeccc--EEEEEeCCceEEEEeec-------------------------
Q psy12456         83 KNFKTLQLDPNYEIRDLCFD----QSGTYMAVAGTD--VRVFLCKQWQELAMFNE-------------------------  131 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~-------------------------  131 (162)
                      +.+..+...+..+|.+++|+    |++.++++++.|  +++|+....+.+..+.+                         
T Consensus       247 ~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  326 (437)
T 3gre_A          247 VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGI  326 (437)
T ss_dssp             EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCC
T ss_pred             cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceeccc
Confidence            77777765555679999555    567899999888  77888777776666553                         


Q ss_pred             -CcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        132 -HTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       132 -h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                       |...|.+++|+ ++++|++++.|+.|++||+
T Consensus       327 ~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~  357 (437)
T 3gre_A          327 RSLNALSTISVS-NDKILLTDEATSSIVMFSL  357 (437)
T ss_dssp             CSGGGGCCEEEE-TTEEEEEEGGGTEEEEEET
T ss_pred             ccCCceEEEEEC-CceEEEecCCCCeEEEEEC
Confidence             55668888888 6789999999999999995

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.95  E-value=8.7e-26  Score=173.40  Aligned_cols=156  Identities=14%  Similarity=0.170  Sum_probs=138.9

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC----eeeeeccCCCCC-EEEEEEcc--CCCEEEEEeCCCeEEEE
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ----KNVTDFQLDAGP-IQALSFSE--NGYYLATAADENCVKLW   77 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~----~~~~~~~~~~~~-v~~i~~~~--~~~~l~s~~~d~~v~~w   77 (162)
                      ..+...|++++|+|+|+++|+++ ++.|++||++++    +....+.+|..+ |.+++|+|  ++++|++++.|++|++|
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            45678899999999999999998 789999999988    889999999999 99999999  99999999999999999


Q ss_pred             EcccC--------cceeEEeeCCCCCeeEEEECCCCCEEEEeccc----EEEEEeCCceEEEEeecCcccEEEEEECCCC
Q psy12456         78 DLRKL--------KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD----VRVFLCKQWQELAMFNEHTAMVTGVRFGTHA  145 (162)
Q Consensus        78 d~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~  145 (162)
                      |+.+.        +....+.. +...+.+++|+|+++++++++.+    ..++.++..+.+..+.+|...|.+++|+|++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~  172 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSR  172 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSS
T ss_pred             eCCCCcccccccccccchhhc-ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCC
Confidence            99643        33444443 45679999999999999999876    7888888888888899999999999999999


Q ss_pred             c-eEEEeecCCeEEEeeC
Q psy12456        146 H-YLASSSMDRTLKLYSL  162 (162)
Q Consensus       146 ~-~l~s~s~D~~i~iw~~  162 (162)
                      + .+++++.|+.|++||+
T Consensus       173 ~~~l~~~~~d~~v~vwd~  190 (615)
T 1pgu_A          173 PMRSMTVGDDGSVVFYQG  190 (615)
T ss_dssp             SCEEEEEETTTEEEEEET
T ss_pred             CcEEEEEeCCCcEEEEeC
Confidence            8 7999999999999984

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.2e-26  Score=173.52  Aligned_cols=148  Identities=9%  Similarity=0.113  Sum_probs=119.8

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCC-----CEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG-----PIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      +.+.|.+++|+|+|+++|+++.||.+++||.++  .+..+. |..     .+.+++|||||++|++|+.||+|++||+..
T Consensus        84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~  160 (588)
T 2j04_A           84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK  160 (588)
T ss_dssp             CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            378899999999999999999999999999543  667777 665     499999999999999999999999999987


Q ss_pred             Ccc-------eeEEe---eCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCce---EEEEe-ecCcccEEEEEECCCC
Q psy12456         82 LKN-------FKTLQ---LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ---ELAMF-NEHTAMVTGVRFGTHA  145 (162)
Q Consensus        82 ~~~-------~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~---~~~~~-~~h~~~v~~~~~s~~~  145 (162)
                      .+.       +..+.   ..+...|.+++|+|+|  +++++.|  +++|+.....   ...++ .+|...|.+++|+  +
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g  236 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D  236 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T
T ss_pred             CccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C
Confidence            542       34443   2234579999999999  5555555  7788765544   23455 4788899999999  6


Q ss_pred             ceEEEeecCCeEEEeeC
Q psy12456        146 HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       146 ~~l~s~s~D~~i~iw~~  162 (162)
                      +.+|+++ |++|++||+
T Consensus       237 ~~LASa~-~~tIkLWd~  252 (588)
T 2j04_A          237 YKVVLTC-PGYVHKIDL  252 (588)
T ss_dssp             TEEEEEC-SSEEEEEET
T ss_pred             CEEEEEe-CCeEEEEEC
Confidence            8999887 799999985

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.95  E-value=1.4e-25  Score=177.53  Aligned_cols=157  Identities=19%  Similarity=0.278  Sum_probs=141.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC-eeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ-KNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+...|++++|+|+++++++|+.||.|++||++++ .....+..|..+|.+++|+| ++.++++++.|++|++||++..+
T Consensus        95 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~  174 (814)
T 3mkq_A           95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST  174 (814)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS
T ss_pred             cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            46778999999999999999999999999999987 67788889999999999999 88999999999999999998777


Q ss_pred             ceeEEeeCCCCCeeEEEECC--CCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQ--SGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      ....+..++...+..++|+|  ++.++++++.+  +++|+....+.+..+..|...|.+++|+|+++++++++.|+.|++
T Consensus       175 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~v  254 (814)
T 3mkq_A          175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI  254 (814)
T ss_dssp             CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence            66666665556799999999  99999999887  777887788888889999999999999999999999999999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus       255 wd~  257 (814)
T 3mkq_A          255 WNS  257 (814)
T ss_dssp             EET
T ss_pred             EEC
Confidence            985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.6e-26  Score=175.26  Aligned_cols=154  Identities=10%  Similarity=0.048  Sum_probs=125.7

Q ss_pred             CCCcEEEEEeCCC------CcEEEEeeCCCcEEEEECCCCe-----------eeeeccCCCCCEEEEEEccCCCEEEEEe
Q psy12456          7 GGPTLTTAQLHPD------GLIFGIGTSDSQVQIWDLKKQK-----------NVTDFQLDAGPIQALSFSENGYYLATAA   69 (162)
Q Consensus         7 ~~~~v~~~~~~~~------g~~~a~g~~dg~i~~wd~~~~~-----------~~~~~~~~~~~v~~i~~~~~~~~l~s~~   69 (162)
                      +...|..++|+|+      +.+||+++.||+|+|||+.+++           +...+..|..+|.+++|++++ .|++|+
T Consensus       206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs  284 (524)
T 2j04_B          206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGF  284 (524)
T ss_dssp             CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEE
T ss_pred             cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEe
Confidence            4567999999997      5799999999999999997653           234677899999999999864 899999


Q ss_pred             CCCeEEEEEcccCcc-eeEEeeCCCCCeeEE--EECCCC-CEEEEeccc--EEEEEeCCceEEEEeecCcc--cEEEEEE
Q psy12456         70 DENCVKLWDLRKLKN-FKTLQLDPNYEIRDL--CFDQSG-TYMAVAGTD--VRVFLCKQWQELAMFNEHTA--MVTGVRF  141 (162)
Q Consensus        70 ~d~~v~~wd~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~--~v~~~~~  141 (162)
                      .|++|++||+++.+. ...+.. +...|.++  +|+|++ .+|++++.|  +++|+.+..+.+..+.+|..  .|.+++|
T Consensus       285 ~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          285 KNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY  363 (524)
T ss_dssp             TTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred             CCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence            999999999986533 334554 45579998  578887 899999988  78888776655555666653  4889999


Q ss_pred             CCCCceEEEeecCCeEEEeeC
Q psy12456        142 GTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       142 s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +|+++.+++++.|++|++||+
T Consensus       364 sp~~~~l~s~~~d~tv~lwd~  384 (524)
T 2j04_B          364 CPQIYSYIYSDGASSLRAVPS  384 (524)
T ss_dssp             ETTTTEEEEECSSSEEEEEET
T ss_pred             CCCcCeEEEeCCCCcEEEEEC
Confidence            999999999999999999985

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=1.3e-25  Score=167.33  Aligned_cols=156  Identities=20%  Similarity=0.324  Sum_probs=131.8

Q ss_pred             CCCCcEEEEEeCCCCc-EEEEeeCCCcEEEEECCCCee-------eeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEE
Q psy12456          6 AGGPTLTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQKN-------VTDFQLDAGPIQALSFSE-NGYYLATAADENCVKL   76 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~~-------~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~   76 (162)
                      .++..|++++|+|++. +|++|+.||.|++||++++..       ...+..|...|.+++|+| ++.+|++++.|+.|++
T Consensus       179 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i  258 (430)
T 2xyi_A          179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMI  258 (430)
T ss_dssp             CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred             CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEE
Confidence            4566889999999998 999999999999999987422       456778999999999999 7889999999999999


Q ss_pred             EEcccC---cceeEEeeCCCCCeeEEEECCCCC-EEEEeccc--EEEEEeCC-ceEEEEeecCcccEEEEEECCCCc-eE
Q psy12456         77 WDLRKL---KNFKTLQLDPNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHAH-YL  148 (162)
Q Consensus        77 wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~-~l  148 (162)
                      ||+++.   +....+.. +...+++++|+|++. ++++++.+  +++|+.+. ...+..+..|...|.+++|+|+++ ++
T Consensus       259 ~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l  337 (430)
T 2xyi_A          259 WDTRNNNTSKPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL  337 (430)
T ss_dssp             EETTCSCSSSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEE
T ss_pred             EECCCCCCCcceeEeec-CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEE
Confidence            999876   34444543 455799999999987 68888876  77888776 456778889999999999999985 68


Q ss_pred             EEeecCCeEEEeeC
Q psy12456        149 ASSSMDRTLKLYSL  162 (162)
Q Consensus       149 ~s~s~D~~i~iw~~  162 (162)
                      ++++.|+.|++||+
T Consensus       338 ~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          338 ASSGTDRRLHVWDL  351 (430)
T ss_dssp             EEEETTSCCEEEEG
T ss_pred             EEEeCCCcEEEEeC
Confidence            99999999999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=9.7e-26  Score=163.03  Aligned_cols=154  Identities=16%  Similarity=0.241  Sum_probs=130.2

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEE--ccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSF--SENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+...|++++|+|++++|++++.||.|++||+++++.+. +..|..+|.+++|  +|++.+|++++.|+.|++||+++.+
T Consensus        84 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A           84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence            467889999999999999999999999999999988776 4558899999999  8999999999999999999987554


Q ss_pred             ceeEEee-------------------------------------------------------------------------
Q psy12456         84 NFKTLQL-------------------------------------------------------------------------   90 (162)
Q Consensus        84 ~~~~~~~-------------------------------------------------------------------------   90 (162)
                      .+..+..                                                                         
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i  242 (368)
T 3mmy_A          163 PMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI  242 (368)
T ss_dssp             CSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred             EEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence            3211110                                                                         


Q ss_pred             ----------------CCCC------------CeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEE
Q psy12456         91 ----------------DPNY------------EIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVR  140 (162)
Q Consensus        91 ----------------~~~~------------~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~  140 (162)
                                      .+..            .+.+++|+|++.++++++.|  +++|+....+.+..+..|...|.+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  322 (368)
T 3mmy_A          243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACC  322 (368)
T ss_dssp             EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEE
T ss_pred             EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEE
Confidence                            0000            48899999999999999887  88899888889999999999999999


Q ss_pred             ECCCCceEEEeecCCeEEEe
Q psy12456        141 FGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus       141 ~s~~~~~l~s~s~D~~i~iw  160 (162)
                      |+|++++|++++.|+..+.|
T Consensus       323 ~s~~g~~l~~~s~d~~~~~~  342 (368)
T 3mmy_A          323 FNHNGNIFAYASSYDWSKGH  342 (368)
T ss_dssp             ECTTSSCEEEEECCCSTTCG
T ss_pred             ECCCCCeEEEEecccccccc
Confidence            99999999999988754444

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.9e-26  Score=166.05  Aligned_cols=153  Identities=16%  Similarity=0.298  Sum_probs=132.5

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      +...|++++|+|++++|++|+.||.|++|| .+++.+..+..|..+|.+++|+|++++|++++.|+.|++||+++.+...
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            566999999999999999999999999999 6678888899999999999999999999999999999999998877666


Q ss_pred             EEeeCCCCC---------------eeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEE
Q psy12456         87 TLQLDPNYE---------------IRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLA  149 (162)
Q Consensus        87 ~~~~~~~~~---------------v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~  149 (162)
                      .+..+.. .               +.+++|+|++. +++++.+  +++|+....+.+..+..|...|.+++|+|++++|+
T Consensus       186 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          186 HFELKET-GGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             EECCC----------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred             Eeecccc-CccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence            6554322 2               78899999876 4555555  78888877777788889999999999999999999


Q ss_pred             EeecCCeEEEeeC
Q psy12456        150 SSSMDRTLKLYSL  162 (162)
Q Consensus       150 s~s~D~~i~iw~~  162 (162)
                      +++.|+.|++||+
T Consensus       264 ~~~~d~~i~i~d~  276 (425)
T 1r5m_A          264 SASDDGTLRIWHG  276 (425)
T ss_dssp             EEETTSCEEEECS
T ss_pred             EEcCCCEEEEEEC
Confidence            9999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.2e-26  Score=166.71  Aligned_cols=157  Identities=13%  Similarity=0.265  Sum_probs=134.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC----CeeeeeccCCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK----QKNVTDFQLDAGPIQALSFSEN-GYYLATAADENCVKLWDLR   80 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~----~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d~~v~~wd~~   80 (162)
                      .+...|++++|+|++++|++|+.||.|++||+++    .+.+..+..|..+|.+++|+|+ +++|++++.|+.|++||++
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            3567899999999999999999999999999987    4578889999999999999998 8999999999999999998


Q ss_pred             cCc------ceeEE--eeCCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCceEEEEeecC------cccEEEEEECC
Q psy12456         81 KLK------NFKTL--QLDPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQWQELAMFNEH------TAMVTGVRFGT  143 (162)
Q Consensus        81 ~~~------~~~~~--~~~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~~~~~~~~~h------~~~v~~~~~s~  143 (162)
                      +.+      .....  ...+...+.+++|+|+ +.++++++.+  +++|+....+.+..+..|      ...|.+++|+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence            765      22221  1124457999999999 7899998877  888888888888777766      78999999999


Q ss_pred             CC-ceEEEeecCC---eEEEeeC
Q psy12456        144 HA-HYLASSSMDR---TLKLYSL  162 (162)
Q Consensus       144 ~~-~~l~s~s~D~---~i~iw~~  162 (162)
                      ++ .++++++.|+   .|++||+
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~  247 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDL  247 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEET
T ss_pred             CCCCEEEEEECCCCCceEEEEeC
Confidence            97 6899999998   9999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.1e-26  Score=179.63  Aligned_cols=158  Identities=16%  Similarity=0.305  Sum_probs=134.1

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECC--CCeeeeeccCCCCCEEEEEEccC--CCEEEEEeCCCeEEEEEc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK--KQKNVTDFQLDAGPIQALSFSEN--GYYLATAADENCVKLWDL   79 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~--~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~d~~v~~wd~   79 (162)
                      ...|...|++++|+|+|+++++|+.||.|++||+.  +++.+..+..|.++|.+++|+|+  +++|++|+.|++|++||+
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~   84 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   84 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence            34678899999999999999999999999999998  45678889999999999999987  999999999999999999


Q ss_pred             ccCc--ceeEEeeCCCCCeeEEEECCC--CCEEEEeccc--EEEEEeCCc--eEEEEeecCcccEEEEEECC--------
Q psy12456         80 RKLK--NFKTLQLDPNYEIRDLCFDQS--GTYMAVAGTD--VRVFLCKQW--QELAMFNEHTAMVTGVRFGT--------  143 (162)
Q Consensus        80 ~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~--~~i~~~~~~--~~~~~~~~h~~~v~~~~~s~--------  143 (162)
                      ++.+  ....+.. +...|.+++|+|+  +.++++++.|  +++|+....  .....+..|...|.++.|+|        
T Consensus        85 ~~~~~~~~~~~~~-h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~  163 (753)
T 3jro_A           85 ENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE  163 (753)
T ss_dssp             ETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred             CCCcccccccccC-CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence            8765  3333333 4567999999999  9999999987  677776654  23445678999999999999        


Q ss_pred             -----CCceEEEeecCCeEEEeeC
Q psy12456        144 -----HAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       144 -----~~~~l~s~s~D~~i~iw~~  162 (162)
                           ++.++++++.|+.|++||+
T Consensus       164 ~~~~~d~~~l~sgs~dg~I~iwd~  187 (753)
T 3jro_A          164 HNGTKESRKFVTGGADNLVKIWKY  187 (753)
T ss_dssp             ---CGGGCCEEEEETTSCEEEEEE
T ss_pred             cccCCCCCEEEEEECCCeEEEEec
Confidence                 5899999999999999984

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.4e-25  Score=180.46  Aligned_cols=152  Identities=10%  Similarity=0.111  Sum_probs=129.8

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      +...|++++|+| |++|++++.|++|++||+++++.+..+. |.+.|.+++|+|++++|++|+.|++|++||+++.+.. 
T Consensus        57 ~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-  133 (902)
T 2oaj_A           57 DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-  133 (902)
T ss_dssp             SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-
T ss_pred             CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-
Confidence            567899999999 8899999999999999999999988886 5678999999999999999999999999999865532 


Q ss_pred             EEe-----------eCCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCceEEEEeecC------------------cc
Q psy12456         87 TLQ-----------LDPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQWQELAMFNEH------------------TA  134 (162)
Q Consensus        87 ~~~-----------~~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~~~~~~~~~h------------------~~  134 (162)
                      .+.           ..+..+|.+++|+|+ +..+++++.+  + +|+.+..+.+..+..|                  ..
T Consensus       134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~  212 (902)
T 2oaj_A          134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP  212 (902)
T ss_dssp             EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred             cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence            111           123457999999996 4678888777  6 8888877777777655                  57


Q ss_pred             cEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        135 MVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       135 ~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .|.+++|+|++++|++++.|++|++||+
T Consensus       213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          213 KVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            7999999999999999999999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.94  E-value=3.5e-25  Score=165.76  Aligned_cols=153  Identities=22%  Similarity=0.364  Sum_probs=132.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEc--cCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFS--ENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+...|++++|+|++ ++++|+.||+|++||+++++.+..+..|..+|.+++|+  +++.++++++.|++|++||+++.+
T Consensus       160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~  238 (464)
T 3v7d_B          160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES  238 (464)
T ss_dssp             CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCC
T ss_pred             CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCc
Confidence            577899999999988 89999999999999999999999999999999999998  478999999999999999998654


Q ss_pred             cee-----------------------EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEE
Q psy12456         84 NFK-----------------------TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTG  138 (162)
Q Consensus        84 ~~~-----------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~  138 (162)
                      ...                       .+. .+...+.+  +++++.++++++.|  +++|+....+.+..+.+|...|.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  315 (464)
T 3v7d_B          239 SVPDHGEEHDYPLVFHTPEENPYFVGVLR-GHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS  315 (464)
T ss_dssp             CC------CCSSEEESCGGGCTTEEEEEC-CCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             ccccccccCCcceEeeccCCCeEEEEEcc-CccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEE
Confidence            321                       122 23334544  46788999999877  888888888899999999999999


Q ss_pred             EEECCCCceEEEeecCCeEEEeeC
Q psy12456        139 VRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       139 ~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +.|+|+++++++++.|+.|++||+
T Consensus       316 ~~~~~~~~~l~sg~~dg~i~vwd~  339 (464)
T 3v7d_B          316 TIYDHERKRCISASMDTTIRIWDL  339 (464)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEET
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEEC
Confidence            999999999999999999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=5.7e-25  Score=161.10  Aligned_cols=156  Identities=28%  Similarity=0.373  Sum_probs=130.8

Q ss_pred             CCCcEEEEEeCCC---CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcccC
Q psy12456          7 GGPTLTTAQLHPD---GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY-YLATAADENCVKLWDLRKL   82 (162)
Q Consensus         7 ~~~~v~~~~~~~~---g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~~   82 (162)
                      ....+.++.++|.   +.++++|+.||.|++||+++++.+..+..|..+|.+++|+|++. .+++++.|+.|++||+++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          140 FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred             CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence            3556888999984   44999999999999999999999999999999999999999988 5899999999999999765


Q ss_pred             cc-eeEEe--------------eCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC-----------------------
Q psy12456         83 KN-FKTLQ--------------LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ-----------------------  122 (162)
Q Consensus        83 ~~-~~~~~--------------~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~-----------------------  122 (162)
                      +. ...+.              ..+...+.+++|+|++.++++++.|  +++|+...                       
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (408)
T 4a11_B          220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV  299 (408)
T ss_dssp             SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE
T ss_pred             CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE
Confidence            42 22221              1244579999999999999999877  77777543                       


Q ss_pred             ------------------------ceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        123 ------------------------WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       123 ------------------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                                              .+.+..+.+|...|.+++|+|++++|++++.|+.|++|++
T Consensus       300 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~  363 (408)
T 4a11_B          300 SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVP  363 (408)
T ss_dssp             CCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             ecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeC
Confidence                                    2345667789999999999999999999999999999984

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1e-25  Score=181.34  Aligned_cols=151  Identities=19%  Similarity=0.199  Sum_probs=129.7

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      +...|++++|+|++++||+|+.||+|+|||..+.+....+. |..+|.+++|+| +++|++++.|++|++||+++.+.+.
T Consensus        16 h~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~   93 (902)
T 2oaj_A           16 MSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLT   93 (902)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEE
T ss_pred             CCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEE
Confidence            45689999999999999999999999999998877766654 678999999999 8899999999999999999877776


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEE-----------EEeecCcccEEEEEECCC-CceEEEee
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQEL-----------AMFNEHTAMVTGVRFGTH-AHYLASSS  152 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-----------~~~~~h~~~v~~~~~s~~-~~~l~s~s  152 (162)
                      .+.  +...|.+++|+|++.++++|+.|  +++|+....+..           ..+.+|..+|.+++|+|+ +..+++|+
T Consensus        94 ~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~  171 (902)
T 2oaj_A           94 TVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY  171 (902)
T ss_dssp             EEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred             EEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence            665  33579999999999999999887  788887665542           234679999999999996 57889999


Q ss_pred             cCCeEEEeeC
Q psy12456        153 MDRTLKLYSL  162 (162)
Q Consensus       153 ~D~~i~iw~~  162 (162)
                      .|+.| +||+
T Consensus       172 ~dg~v-lWd~  180 (902)
T 2oaj_A          172 EYVTL-TYSL  180 (902)
T ss_dssp             SSCEE-EEET
T ss_pred             CCCcE-EEEC
Confidence            99999 9985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.1e-25  Score=174.90  Aligned_cols=156  Identities=15%  Similarity=0.269  Sum_probs=135.3

Q ss_pred             CCCCcEEEEEeCCC--CcEEEEeeCCCcEEEEECCCCe--eeeeccCCCCCEEEEEEccC--CCEEEEEeCCCeEEEEEc
Q psy12456          6 AGGPTLTTAQLHPD--GLIFGIGTSDSQVQIWDLKKQK--NVTDFQLDAGPIQALSFSEN--GYYLATAADENCVKLWDL   79 (162)
Q Consensus         6 ~~~~~v~~~~~~~~--g~~~a~g~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~d~~v~~wd~   79 (162)
                      .+...|++++|+|+  ++++++|+.||.|++||+++++  .+..+..|..+|.+++|+|+  +.++++|+.|+.|++||+
T Consensus        51 ~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl  130 (753)
T 3jro_A           51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF  130 (753)
T ss_dssp             CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred             CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence            46789999999988  9999999999999999999887  77788889999999999999  999999999999999999


Q ss_pred             ccCcc--eeEEeeCCCCCeeEEEECC-------------CCCEEEEeccc--EEEEEeCCc----eEEEEeecCcccEEE
Q psy12456         80 RKLKN--FKTLQLDPNYEIRDLCFDQ-------------SGTYMAVAGTD--VRVFLCKQW----QELAMFNEHTAMVTG  138 (162)
Q Consensus        80 ~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~~~~~~~~--~~i~~~~~~----~~~~~~~~h~~~v~~  138 (162)
                      ++...  ..... .+...+.+++|+|             ++.++++++.|  +++|+.+..    .....+.+|...|.+
T Consensus       131 ~~~~~~~~~~~~-~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~  209 (753)
T 3jro_A          131 KENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD  209 (753)
T ss_dssp             CSSSCCCCEEEE-CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred             ecCCCcceeEee-cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEE
Confidence            87632  22233 3456799999999             58899999877  788887654    556678899999999


Q ss_pred             EEECCC---CceEEEeecCCeEEEeeC
Q psy12456        139 VRFGTH---AHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       139 ~~~s~~---~~~l~s~s~D~~i~iw~~  162 (162)
                      ++|+|+   ++++++++.|+.|++||+
T Consensus       210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          210 VAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             EEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             EEeccCCCCCCEEEEEecCCEEEEecC
Confidence            999999   899999999999999984

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.6e-25  Score=165.10  Aligned_cols=155  Identities=10%  Similarity=0.101  Sum_probs=133.9

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeee----eccCCCCCEEEEEEccC---CCEEEEEeCCCeEEEEEc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVT----DFQLDAGPIQALSFSEN---GYYLATAADENCVKLWDL   79 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~----~~~~~~~~v~~i~~~~~---~~~l~s~~~d~~v~~wd~   79 (162)
                      +...|++++|+|+|++|++|+.||.+++|++.+++...    .+..|..+|.+++|+|+   +++|++++.|++|++||+
T Consensus       148 ~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~  227 (450)
T 2vdu_B          148 FSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY  227 (450)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred             CCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence            45679999999999999999999999999998876554    77789999999999999   999999999999999999


Q ss_pred             ccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeec-------------------------C
Q psy12456         80 RKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE-------------------------H  132 (162)
Q Consensus        80 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~-------------------------h  132 (162)
                      ++.+.+..+...+...|.+++|+ ++.++++++.|  +++|+....+.+..+..                         +
T Consensus       228 ~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (450)
T 2vdu_B          228 PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII  306 (450)
T ss_dssp             SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred             CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence            88776666444456679999999 99999999987  78888877777766652                         3


Q ss_pred             cccEEEEEECCCCceEEEee-cCCeEEEeeC
Q psy12456        133 TAMVTGVRFGTHAHYLASSS-MDRTLKLYSL  162 (162)
Q Consensus       133 ~~~v~~~~~s~~~~~l~s~s-~D~~i~iw~~  162 (162)
                      ...|..+.|+|+++++++++ .|+.|++|++
T Consensus       307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             eEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            45699999999999999998 8999999984

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.94  E-value=2.5e-25  Score=160.54  Aligned_cols=155  Identities=13%  Similarity=0.263  Sum_probs=130.6

Q ss_pred             CCCcEEEEEeCCC---CcEEEEeeCCCcEEEEECCCCe-eeeeccCCCCCEEEEE------EccCCCEEEEEeCCCeEEE
Q psy12456          7 GGPTLTTAQLHPD---GLIFGIGTSDSQVQIWDLKKQK-NVTDFQLDAGPIQALS------FSENGYYLATAADENCVKL   76 (162)
Q Consensus         7 ~~~~v~~~~~~~~---g~~~a~g~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~i~------~~~~~~~l~s~~~d~~v~~   76 (162)
                      +...|++++|+|+   |+++++|+.||.|++||+++++ ++..+..|..+|.+++      |+|++++|++++.|+.|++
T Consensus        64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v  143 (357)
T 3i2n_A           64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV  143 (357)
T ss_dssp             ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred             ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence            5678999999998   7999999999999999999887 8889999999999995      5789999999999999999


Q ss_pred             EEcccCc-ceeEEeeCC---CCCeeEEE----ECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECC---
Q psy12456         77 WDLRKLK-NFKTLQLDP---NYEIRDLC----FDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGT---  143 (162)
Q Consensus        77 wd~~~~~-~~~~~~~~~---~~~v~~~~----~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~---  143 (162)
                      ||+++.+ ....+..+.   ...+.+++    |+|++.++++++.+  +++|+.+..+.. ....|...|.+++|+|   
T Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~  222 (357)
T 3i2n_A          144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDI  222 (357)
T ss_dssp             ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSS
T ss_pred             EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCcee-eecCCCCceEEEEcCCCCC
Confidence            9998765 455554322   23688887    78999999999876  778887776654 3467889999999999   


Q ss_pred             CCceEEEeecCCeEEEeeC
Q psy12456        144 HAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       144 ~~~~l~s~s~D~~i~iw~~  162 (162)
                      +++++++++.|+.|++||+
T Consensus       223 ~~~~l~~~~~dg~i~i~d~  241 (357)
T 3i2n_A          223 SMNKLVATSLEGKFHVFDM  241 (357)
T ss_dssp             SCCEEEEEESTTEEEEEEE
T ss_pred             CCCEEEEECCCCeEEEEeC
Confidence            8999999999999999984

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.9e-25  Score=155.68  Aligned_cols=151  Identities=15%  Similarity=0.252  Sum_probs=131.5

Q ss_pred             CCCCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccC-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQL-DAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+...+.++.++| +++++++++.||.|++||  .++....+.. |..++.+++|+|++. +++++.|+.|++||+++.+
T Consensus       140 ~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~  216 (313)
T 3odt_A          140 AHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGD  216 (313)
T ss_dssp             CCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCC
T ss_pred             cCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchh
Confidence            4677899999998 999999999999999999  4567777776 889999999999988 9999999999999999888


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .+..+..+ ...+.+++|+|++. +++++.|  +++|+....+.+..+..|...|.+++|+|+++ +++++.|+.|++|+
T Consensus       217 ~~~~~~~~-~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          217 VLRTYEGH-ESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             EEEEEECC-SSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             hhhhhhcC-CceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            77777654 45799999999995 6677666  77787778888889999999999999999998 55799999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       294 ~  294 (313)
T 3odt_A          294 Q  294 (313)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=3.1e-25  Score=159.51  Aligned_cols=152  Identities=14%  Similarity=0.157  Sum_probs=130.5

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC---------CeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK---------QKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW   77 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~w   77 (162)
                      +...|++++|+| +.++++++.||.|++||+++         ++++..+. |...|.+++|+|++  +++++.|+.|++|
T Consensus       100 ~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~  175 (342)
T 1yfq_A          100 ANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWF  175 (342)
T ss_dssp             CCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEE
T ss_pred             CCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEE
Confidence            778999999999 99999999999999999988         77777777 78899999999987  9999999999999


Q ss_pred             Eccc-Ccc-eeEEeeCCCCCeeEEEECC-CCCEEEEeccc--EEEEEeCCc------eEEEEeecCcc---------cEE
Q psy12456         78 DLRK-LKN-FKTLQLDPNYEIRDLCFDQ-SGTYMAVAGTD--VRVFLCKQW------QELAMFNEHTA---------MVT  137 (162)
Q Consensus        78 d~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~--~~i~~~~~~------~~~~~~~~h~~---------~v~  137 (162)
                      |+++ ... .......+...+.+++|+| ++.++++++.+  +++|+++..      +....+..|..         .|.
T Consensus       176 d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (342)
T 1yfq_A          176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN  255 (342)
T ss_dssp             ESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred             ECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence            9987 443 2333344566799999999 99999999887  677777655      55667777755         999


Q ss_pred             EEEECCCCceEEEeecCCeEEEeeC
Q psy12456        138 GVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       138 ~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +++|+|++++|++++.|+.|++||+
T Consensus       256 ~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          256 SIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             EEEECTTTCCEEEEETTSCEEEEET
T ss_pred             EEEEcCCCCEEEEecCCceEEEEcC
Confidence            9999999999999999999999985

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=1.2e-24  Score=154.84  Aligned_cols=147  Identities=16%  Similarity=0.337  Sum_probs=122.2

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc--CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ--LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ++.++|++++ +||+|. |++|+|||+++++.+..++  .|...|.+++|+|++++|++|+.|++|++||+++.+.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            4679999987 788775 8999999999999887765  56778999999999999999999999999999988887777


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC-ceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+. ..+.  ++++++.++++++.+  .+++.... ...+..+.+|...+..+.|+++++++++++.|++|++||+
T Consensus       106 ~~h~-~~~~--~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~  179 (318)
T 4ggc_A          106 TSHS-ARVG--SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS  179 (318)
T ss_dssp             ECCS-SCEE--EEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred             cCcc-ceEE--EeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEEC
Confidence            6543 3344  455667889999887  44444333 3566778899999999999999999999999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=1.5e-25  Score=161.20  Aligned_cols=155  Identities=12%  Similarity=0.117  Sum_probs=128.8

Q ss_pred             ccCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe---eeeeccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEE
Q psy12456          3 ASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK---NVTDFQLDAGPIQALSFSENGY-YLATAADENCVKLWD   78 (162)
Q Consensus         3 ~~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd   78 (162)
                      ....|...|++++|+|+++++++|+.||.|++||+++++   ....+..|..+|.+++|+|+++ +|++++.|+.|++||
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence            345788899999999999999999999999999998876   3445557889999999999999 999999999999999


Q ss_pred             c-ccCcceeEEee-CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC---------ceEEEEeecCcccEEEEEECCCC
Q psy12456         79 L-RKLKNFKTLQL-DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ---------WQELAMFNEHTAMVTGVRFGTHA  145 (162)
Q Consensus        79 ~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~---------~~~~~~~~~h~~~v~~~~~s~~~  145 (162)
                      + .+.+. ..+.. .+...|.+++|+| +.++++++.|  +++|+...         .+.+..+. |...|.+++|+|++
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR  162 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence            9 76543 33333 0456799999999 9999999888  66666554         44444555 88999999999887


Q ss_pred             ceEEEeecCCeEEEeeC
Q psy12456        146 HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       146 ~~l~s~s~D~~i~iw~~  162 (162)
                        +++++.|+.|++||+
T Consensus       163 --l~~~~~d~~i~i~d~  177 (342)
T 1yfq_A          163 --LIVGMNNSQVQWFRL  177 (342)
T ss_dssp             --EEEEESTTEEEEEES
T ss_pred             --EEEEeCCCeEEEEEC
Confidence              889999999999985

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.1e-24  Score=153.19  Aligned_cols=153  Identities=15%  Similarity=0.131  Sum_probs=131.9

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc-
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK-   83 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~-   83 (162)
                      ..|...|++++| |+++++++|+.||.|++||+++++....+..|..+|.+++|+|+++++++++.|+.+++|++.... 
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~   93 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG   93 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC
Confidence            457789999999 999999999999999999999999888899999999999999999999999999999999987543 


Q ss_pred             --ceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEeecCcccEEEEEECC-CCceEEEeecCCeEEEe
Q psy12456         84 --NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGT-HAHYLASSSMDRTLKLY  160 (162)
Q Consensus        84 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iw  160 (162)
                        ....+.. +...+.+++|  ++.++++++.+..+..++..+.+..+..|...+.++.|.| +++++++++.|+.|++|
T Consensus        94 ~~~~~~~~~-~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~  170 (313)
T 3odt_A           94 EDPLYTLIG-HQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW  170 (313)
T ss_dssp             SCC-CEECC-CSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             CCcccchhh-cccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence              3344443 4557899998  5778999988854444447778888899999999999987 89999999999999999


Q ss_pred             e
Q psy12456        161 S  161 (162)
Q Consensus       161 ~  161 (162)
                      |
T Consensus       171 d  171 (313)
T 3odt_A          171 Q  171 (313)
T ss_dssp             E
T ss_pred             e
Confidence            8

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=1.2e-25  Score=165.97  Aligned_cols=151  Identities=11%  Similarity=0.071  Sum_probs=117.6

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCee-----eeeccCCCCCEEEEEEcc--------CCCEEEEEeCCCeEEEE
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN-----VTDFQLDAGPIQALSFSE--------NGYYLATAADENCVKLW   77 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~-----~~~~~~~~~~v~~i~~~~--------~~~~l~s~~~d~~v~~w   77 (162)
                      +....+.+++.++|+|+.|++|+|||.++++.     +..+.+|.+.|.+++|+|        |+++|++++.|++|++|
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W  171 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW  171 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence            34444556788999999999999999988754     345788999999999998        78999999999999999


Q ss_pred             EcccCcceeEEeeCCCCCeeEEEECCCCC-EEEEeccc--EEEEEeCCceEEE-------------------------Ee
Q psy12456         78 DLRKLKNFKTLQLDPNYEIRDLCFDQSGT-YMAVAGTD--VRVFLCKQWQELA-------------------------MF  129 (162)
Q Consensus        78 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~--~~i~~~~~~~~~~-------------------------~~  129 (162)
                      |+++.........+ ..++.+++|+|++. ++++++.|  +++|+....+...                         ..
T Consensus       172 d~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  250 (393)
T 4gq1_A          172 RLTDEGPILAGYPL-SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS  250 (393)
T ss_dssp             EEETTEEEEEEEEC-SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-----
T ss_pred             ECCCCceeeeecCC-CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec
Confidence            99876655555444 44699999999874 78888887  7888765432211                         12


Q ss_pred             ecCcccEEEEEEC-CCCceEEEeecCCeEEEeeC
Q psy12456        130 NEHTAMVTGVRFG-THAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       130 ~~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .+|...|..+.|+ |+++.+++++.|+++++||+
T Consensus       251 ~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~  284 (393)
T 4gq1_A          251 SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNL  284 (393)
T ss_dssp             -CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC
T ss_pred             ccccccceeeeeecCCCCEEEEEeCCCCEEEEEC
Confidence            4577888999986 89999999999999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1e-24  Score=165.88  Aligned_cols=149  Identities=13%  Similarity=0.104  Sum_probs=123.1

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-------eeeec----cCCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-------NVTDF----QLDAGPIQALSFSENGYYLATAADENCVKLW   77 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-------~~~~~----~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~w   77 (162)
                      ..|.+++|||||++||+|+.||+|+|||+++++       .+.++    .+|...|.+++|+|++  +++++.|+++++|
T Consensus       130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlW  207 (588)
T 2j04_A          130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSM  207 (588)
T ss_dssp             TCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEE
T ss_pred             ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEE
Confidence            469999999999999999999999999999875       25666    5677899999999999  8889999999999


Q ss_pred             EcccCcc---eeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEE--CCCCceEEEe
Q psy12456         78 DLRKLKN---FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRF--GTHAHYLASS  151 (162)
Q Consensus        78 d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~  151 (162)
                      |+...+.   ...+...+...|.+++|+  +..+++++.. +++|+....+......+|...|..+.|  +|+++.++++
T Consensus       208 d~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a  285 (588)
T 2j04_A          208 TVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMS  285 (588)
T ss_dssp             CCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEEC
T ss_pred             ECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEE
Confidence            9976553   234433455679999999  5788887654 788887766553333389999999999  9999999999


Q ss_pred             ecCCeEEEeeC
Q psy12456        152 SMDRTLKLYSL  162 (162)
Q Consensus       152 s~D~~i~iw~~  162 (162)
                      +.||+ ++|.+
T Consensus       286 ~edG~-klw~~  295 (588)
T 2j04_A          286 NKTSY-KVLLE  295 (588)
T ss_dssp             SSCEE-EEEES
T ss_pred             cCCCC-EEEee
Confidence            99999 99963

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=5.1e-24  Score=175.39  Aligned_cols=157  Identities=18%  Similarity=0.340  Sum_probs=137.7

Q ss_pred             CCCCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+...|++++|+|  ++.++++|+.||.|++||+++++.+..+.+|..+|.+++|+|+++++++++.|++|++||+++.+
T Consensus       697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~  776 (1249)
T 3sfz_A          697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN  776 (1249)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTE
T ss_pred             CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCc
Confidence            4677899999999  56699999999999999999999999999999999999999999999999999999999997654


Q ss_pred             ceeEEe------------------------------------------------------eCCCCCeeEEEECCCCCEEE
Q psy12456         84 NFKTLQ------------------------------------------------------LDPNYEIRDLCFDQSGTYMA  109 (162)
Q Consensus        84 ~~~~~~------------------------------------------------------~~~~~~v~~~~~~~~~~~~~  109 (162)
                      ....+.                                                      ..+...+.+++|+|++.+++
T Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~  856 (1249)
T 3sfz_A          777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV  856 (1249)
T ss_dssp             EEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEE
T ss_pred             ccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEE
Confidence            322221                                                      12344678889999999999


Q ss_pred             Eeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        110 VAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       110 ~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +++.+  +++|+......+..+.+|...|.+++|+|+++++++++.|+.|++|++
T Consensus       857 ~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          857 IALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             EECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             EEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            98877  788888888888899999999999999999999999999999999983

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=4.4e-24  Score=156.31  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=83.4

Q ss_pred             CEEEEEEccCCCEEEEE--eCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCC------
Q psy12456         52 PIQALSFSENGYYLATA--ADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQ------  122 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~--~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~------  122 (162)
                      .++.++|+|||++++++  +.|++|++||+++.+....+.  +...|.+++|+|+|+++++++.+ +.+|....      
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~  212 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIAR  212 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCCceEEeccceeEEEEEeccCcceee
Confidence            47789999999998755  478999999999877666554  34568899999999999888755 33332110      


Q ss_pred             ------------------------------------------ce----EEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456        123 ------------------------------------------WQ----ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus       123 ------------------------------------------~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                                                                ..    ....+.+|...|++++|+|++++||+|+.|++
T Consensus       213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~  292 (365)
T 4h5i_A          213 KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS  292 (365)
T ss_dssp             ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred             eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence                                                      00    01234568888999999999999999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      |+|||+
T Consensus       293 V~iwd~  298 (365)
T 4h5i_A          293 IALVKL  298 (365)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999995

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.93  E-value=1.2e-23  Score=156.10  Aligned_cols=154  Identities=24%  Similarity=0.455  Sum_probs=128.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc-
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN-   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~-   84 (162)
                      .++..|++++|+|+|++||+|+.||.|+|||+++++.+..+.+|...+.++++  ++.+|++|+.|+.+++||.+.... 
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~  222 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHH  222 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeeccccee
Confidence            45678999999999999999999999999999999999999999999988777  467999999999999999976543 


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCce----EEEEeecCcccEEEEEECCCCc-eEEE--eecCC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ----ELAMFNEHTAMVTGVRFGTHAH-YLAS--SSMDR  155 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~----~~~~~~~h~~~v~~~~~s~~~~-~l~s--~s~D~  155 (162)
                      +..+.. +...+..+.++|++.++++++.|  +++|+....+    .+.....|...|.+++|+|++. .+++  |+.|+
T Consensus       223 ~~~~~~-h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~  301 (420)
T 4gga_A          223 VATLSG-HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR  301 (420)
T ss_dssp             EEEEEC-CSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred             eEEecc-cccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence            344444 45579999999999999999887  6777765432    3556778999999999998765 4444  45799


Q ss_pred             eEEEeeC
Q psy12456        156 TLKLYSL  162 (162)
Q Consensus       156 ~i~iw~~  162 (162)
                      +|++||+
T Consensus       302 ~I~iwd~  308 (420)
T 4gga_A          302 HIRIWNV  308 (420)
T ss_dssp             EEEEEET
T ss_pred             EEEEEeC
Confidence            9999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=4.2e-25  Score=163.05  Aligned_cols=157  Identities=8%  Similarity=0.054  Sum_probs=109.6

Q ss_pred             CCCCcEEEEEeCC--------CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCC-CEEEEEeCCCeEEE
Q psy12456          6 AGGPTLTTAQLHP--------DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENG-YYLATAADENCVKL   76 (162)
Q Consensus         6 ~~~~~v~~~~~~~--------~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~d~~v~~   76 (162)
                      .|...|++++|+|        ||++||+|+.|++|+|||++++.++..+..|..++.+++|+|++ .+|++++.|++|++
T Consensus       134 gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~  213 (393)
T 4gq1_A          134 GHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRI  213 (393)
T ss_dssp             SCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred             CCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEE
Confidence            4678899999998        89999999999999999999888888887888999999999986 58999999999999


Q ss_pred             EEcccCcceeEEe------------------------eCCCCCeeEEEEC-CCCCEEEEeccc--EEEEEeCCceEEEEe
Q psy12456         77 WDLRKLKNFKTLQ------------------------LDPNYEIRDLCFD-QSGTYMAVAGTD--VRVFLCKQWQELAMF  129 (162)
Q Consensus        77 wd~~~~~~~~~~~------------------------~~~~~~v~~~~~~-~~~~~~~~~~~~--~~i~~~~~~~~~~~~  129 (162)
                      ||+++.+......                        ..+...+.++.|+ |++..+++++.|  +++|+....+....+
T Consensus       214 wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l  293 (393)
T 4gq1_A          214 FDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEI  293 (393)
T ss_dssp             EETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------
T ss_pred             EECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceE
Confidence            9998654322111                        1123346777775 799999999887  677876655544445


Q ss_pred             ecCcccEEEEEECC--------------------CCceEEEeecCCeEEEeeC
Q psy12456        130 NEHTAMVTGVRFGT--------------------HAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       130 ~~h~~~v~~~~~s~--------------------~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..|...+..+.+.|                    ++.++++|+.|++|++||+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~  346 (393)
T 4gq1_A          294 SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT  346 (393)
T ss_dssp             ----------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET
T ss_pred             eeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC
Confidence            55554444443333                    3446788899999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=9.1e-24  Score=153.98  Aligned_cols=150  Identities=18%  Similarity=0.229  Sum_probs=116.5

Q ss_pred             EEEEEeCCCCcEE-EEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCC---------------------------
Q psy12456         11 LTTAQLHPDGLIF-GIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENG---------------------------   62 (162)
Q Consensus        11 v~~~~~~~~g~~~-a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~---------------------------   62 (162)
                      +..+++.++++++ ++|+.|++|++||+++++.+..+. +..+|.+++++++.                           
T Consensus        61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~  139 (355)
T 3vu4_A           61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRF  139 (355)
T ss_dssp             CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEE
T ss_pred             eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccC
Confidence            3444455544444 345667799999999999998887 45689999888753                           


Q ss_pred             --------CEEEE--EeCCCeEEEEEcccCc----------------ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--
Q psy12456         63 --------YYLAT--AADENCVKLWDLRKLK----------------NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--  114 (162)
Q Consensus        63 --------~~l~s--~~~d~~v~~wd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--  114 (162)
                              .+++.  |+.|+.|++||+++.+                .+..+.. |...|.+++|+|++.++++++.|  
T Consensus       140 ~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~~  218 (355)
T 3vu4_A          140 GGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGT  218 (355)
T ss_dssp             EEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTCS
T ss_pred             CceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCCC
Confidence                    23344  4678888888887543                1344444 45679999999999999999876  


Q ss_pred             -EEEEEeCCceEEEEee-c-CcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        115 -VRVFLCKQWQELAMFN-E-HTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       115 -~~i~~~~~~~~~~~~~-~-h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                       +++|+..+.+.+..+. + |...|.+++|+|++++|++++.|++|++||+
T Consensus       219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence             6788888888888887 5 9999999999999999999999999999985

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=1.7e-23  Score=156.53  Aligned_cols=152  Identities=18%  Similarity=0.326  Sum_probs=133.0

Q ss_pred             CCCCcEEEEEeC--CCCcEEEEeeCCCcEEEEECCCCee-----------------------eeeccCCCCCEEEEEEcc
Q psy12456          6 AGGPTLTTAQLH--PDGLIFGIGTSDSQVQIWDLKKQKN-----------------------VTDFQLDAGPIQALSFSE   60 (162)
Q Consensus         6 ~~~~~v~~~~~~--~~g~~~a~g~~dg~i~~wd~~~~~~-----------------------~~~~~~~~~~v~~i~~~~   60 (162)
                      .+...|++++++  |+++++++|+.||.|++||+++++.                       +..+.+|..++.++  ++
T Consensus       201 ~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~  278 (464)
T 3v7d_B          201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG  278 (464)
T ss_dssp             CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE
T ss_pred             CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC
Confidence            467889999998  5889999999999999999987653                       44567788888766  67


Q ss_pred             CCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEE
Q psy12456         61 NGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTG  138 (162)
Q Consensus        61 ~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~  138 (162)
                      +++++++++.|+.|++||+++.+.+..+.. +...+.+++|+|++.++++++.|  +++|+..+.+.+..+.+|...|..
T Consensus       279 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  357 (464)
T 3v7d_B          279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL  357 (464)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEE
Confidence            889999999999999999998877777665 44579999999999999999887  888988888999999999999999


Q ss_pred             EEECCCCceEEEeecCCeEEEeeC
Q psy12456        139 VRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       139 ~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++|+  ++++++++.|+.|++||+
T Consensus       358 ~~~~--~~~l~s~s~dg~v~vwd~  379 (464)
T 3v7d_B          358 LRLS--DKFLVSAAADGSIRGWDA  379 (464)
T ss_dssp             EEEC--SSEEEEEETTSEEEEEET
T ss_pred             EEEc--CCEEEEEeCCCcEEEEEC
Confidence            9997  579999999999999985

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.92  E-value=2.3e-23  Score=151.86  Aligned_cols=148  Identities=10%  Similarity=0.173  Sum_probs=115.1

Q ss_pred             EEEeCCCCcEEEE--eeCCCcEEEEECCCCe---------------e-eeeccCCCCCEEEEEEccCCCEEEEEeCCCe-
Q psy12456         13 TAQLHPDGLIFGI--GTSDSQVQIWDLKKQK---------------N-VTDFQLDAGPIQALSFSENGYYLATAADENC-   73 (162)
Q Consensus        13 ~~~~~~~g~~~a~--g~~dg~i~~wd~~~~~---------------~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~-   73 (162)
                      .++++|  .++|+  |+.||.|++||+++++               + +..+.+|.++|.+++|+|++++|++|+.|++ 
T Consensus       142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~  219 (355)
T 3vu4_A          142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI  219 (355)
T ss_dssp             EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred             eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence            344444  34544  7889999999998765               2 7788999999999999999999999999998 


Q ss_pred             EEEEEcccCcceeEEeeC-CCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceE--EEEe-------------------
Q psy12456         74 VKLWDLRKLKNFKTLQLD-PNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQE--LAMF-------------------  129 (162)
Q Consensus        74 v~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~--~~~~-------------------  129 (162)
                      |++||+++.+.+..+... +...|.+++|+|+++++++++.|  +++|+......  ...+                   
T Consensus       220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (355)
T 3vu4_A          220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK  299 (355)
T ss_dssp             EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred             EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence            999999988888887732 56689999999999999999988  77887643211  0010                   


Q ss_pred             --ecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        130 --NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       130 --~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                        ..+......++|+|+++.+++++.||.+++|++
T Consensus       300 ~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~  334 (355)
T 3vu4_A          300 LSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKV  334 (355)
T ss_dssp             CCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             eccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence              111222366899999999999999999999974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.92  E-value=4.5e-23  Score=153.62  Aligned_cols=148  Identities=22%  Similarity=0.350  Sum_probs=126.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|+++++  +++++++|+.||.|++||+.+++.+..+.+|.++|.+++|  ++++|++|+.|++|++||+.+.+.+
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~  206 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML  206 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE
Confidence            34566887766  7999999999999999999999999999999999999998  7889999999999999999988877


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEE---EEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQEL---AMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ..+.. +...+.+++|++  .++++++.|  +++|+......+   ..+.+|...|.+++|  +++++++++.|+.|++|
T Consensus       207 ~~~~~-h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vw  281 (435)
T 1p22_A          207 NTLIH-HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW  281 (435)
T ss_dssp             EEECC-CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred             EEEcC-CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEE
Confidence            77765 445799999974  488888877  788887655433   567899999999999  78899999999999999


Q ss_pred             eC
Q psy12456        161 SL  162 (162)
Q Consensus       161 ~~  162 (162)
                      |+
T Consensus       282 d~  283 (435)
T 1p22_A          282 NT  283 (435)
T ss_dssp             ET
T ss_pred             EC
Confidence            85

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.92  E-value=9.9e-23  Score=151.79  Aligned_cols=149  Identities=17%  Similarity=0.378  Sum_probs=127.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|+++++  +++++++|+.||.|++||+++++.+..+..|..+|.+++|++  .++++|+.|+.|++||+++.+..
T Consensus       171 ~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~  246 (435)
T 1p22_A          171 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI  246 (435)
T ss_dssp             CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC
T ss_pred             CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc
Confidence            46678999888  788999999999999999999999999999999999999974  59999999999999999876644


Q ss_pred             e--EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 K--TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .  .....+...+.++++  ++.++++++.|  +++|+..+.+.+..+.+|...|.++.|  +++++++++.|+.|++||
T Consensus       247 ~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd  322 (435)
T 1p22_A          247 TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD  322 (435)
T ss_dssp             EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEE
T ss_pred             eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence            2  222334567888888  67889998877  788888888888889999999999998  467999999999999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       323 ~  323 (435)
T 1p22_A          323 I  323 (435)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.91  E-value=2.4e-22  Score=149.88  Aligned_cols=149  Identities=17%  Similarity=0.263  Sum_probs=125.6

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      ++.+..++++.  ++|+++++|+.||.|++||+.+++.+..+.+|.++|.+++|+  +.++++|+.|++|++||+.+.+.
T Consensus       116 ~h~~~v~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~  191 (445)
T 2ovr_B          116 GHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGEC  191 (445)
T ss_dssp             CSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEE
T ss_pred             ccCCCcEEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcE
Confidence            34455567654  568999999999999999999999999999999999999997  56999999999999999988777


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...+.. +...+.++.++  +..+++++.|  +++|+....+.+..+.+|...|.+++|  +++++++++.|+.|++||+
T Consensus       192 ~~~~~~-h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~  266 (445)
T 2ovr_B          192 IHTLYG-HTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDP  266 (445)
T ss_dssp             EEEECC-CSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEG
T ss_pred             EEEECC-CCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEEC
Confidence            776665 44578888885  5678888877  778888778888888999999999998  6888999999999999984

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.91  E-value=3.4e-22  Score=149.08  Aligned_cols=148  Identities=14%  Similarity=0.299  Sum_probs=130.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|++++++  ++++++|+.||+|++||+++++.+..+..|..+|.+++|+  +.++++|+.|++|++||+++.+..
T Consensus       157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~  232 (445)
T 2ovr_B          157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL  232 (445)
T ss_dssp             CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE
T ss_pred             CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE
Confidence            467789999997  5699999999999999999999999999999999999995  568999999999999999987777


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..+.. +...+.++++  ++.++++++.|  +++|+....+.+..+..|...|.++.|  +++++++++.|+.|++||+
T Consensus       233 ~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~  306 (445)
T 2ovr_B          233 HVLMG-HVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV  306 (445)
T ss_dssp             EEEEC-CSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEET
T ss_pred             EEEcC-CcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEEC
Confidence            77665 4457899988  67788888877  788888888889999999999999999  7889999999999999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.91  E-value=4.8e-23  Score=148.52  Aligned_cols=155  Identities=14%  Similarity=0.147  Sum_probs=113.0

Q ss_pred             CCCCcEEEEEeCCC----CcEEEEeeC--------------------CCcEEEEECCC-CeeeeeccCCCCCEEEEEEcc
Q psy12456          6 AGGPTLTTAQLHPD----GLIFGIGTS--------------------DSQVQIWDLKK-QKNVTDFQLDAGPIQALSFSE   60 (162)
Q Consensus         6 ~~~~~v~~~~~~~~----g~~~a~g~~--------------------dg~i~~wd~~~-~~~~~~~~~~~~~v~~i~~~~   60 (162)
                      -+...|.+++++|+    ++++++++.                    |+.|++|++.. ++.+..+.+|...++.++|+|
T Consensus       109 ~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~  188 (356)
T 2w18_A          109 LEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAE  188 (356)
T ss_dssp             SSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEE
T ss_pred             ccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeec
Confidence            34457888999999    888887663                    77788888743 666666677777777777777


Q ss_pred             ---CCCEEEEEeCCCeEEEEEcccCcceeEEeeCCC--CCeeEEEECCCCCEEEE------------eccc--EEEEEeC
Q psy12456         61 ---NGYYLATAADENCVKLWDLRKLKNFKTLQLDPN--YEIRDLCFDQSGTYMAV------------AGTD--VRVFLCK  121 (162)
Q Consensus        61 ---~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~------------~~~~--~~i~~~~  121 (162)
                         ++.+|++++.|++|++||+++.+.+.++..++.  ..+.+++|+|++.++++            |+.|  +++|+..
T Consensus       189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~  268 (356)
T 2w18_A          189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK  268 (356)
T ss_dssp             EETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred             cCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence               678899999999999999999888888765432  35677899999998754            4445  6777777


Q ss_pred             CceEEEEe-----ecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        122 QWQELAMF-----NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       122 ~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +.+.+..+     .+|...+.+..++  +.++|+++.|++|+|||+
T Consensus       269 tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl  312 (356)
T 2w18_A          269 TTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDL  312 (356)
T ss_dssp             TTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             CCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEEC
Confidence            77665544     3666655554444  778999999999999996

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.91  E-value=4.8e-23  Score=154.10  Aligned_cols=153  Identities=13%  Similarity=0.175  Sum_probs=118.7

Q ss_pred             CCcEEEEEeCCCCcEEE----EeeCCCcEEEEECCCC--------ee---eeeccCCCCCEEEEEEccC-CCEEEEEeCC
Q psy12456          8 GPTLTTAQLHPDGLIFG----IGTSDSQVQIWDLKKQ--------KN---VTDFQLDAGPIQALSFSEN-GYYLATAADE   71 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a----~g~~dg~i~~wd~~~~--------~~---~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d   71 (162)
                      ...|++++|+|+|++||    +|+.|+.|+|||++++        ++   +..+.+|..+|.+++|+|+ +.+|++++.|
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D  171 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD  171 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence            44699999999999999    7899999999998754        22   4556678899999999997 8999999999


Q ss_pred             CeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeec-------CcccEEEEEEC
Q psy12456         72 NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE-------HTAMVTGVRFG  142 (162)
Q Consensus        72 ~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~-------h~~~v~~~~~s  142 (162)
                      ++|++||+++.+....... +...+.+++|+|+|++|++|+.|  +++|+.+ .+....+..       |...|.++.|+
T Consensus       172 g~v~iwD~~~~~~~~~~~~-~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          172 GSIAVLQVTETVKVCATLP-STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI  249 (434)
T ss_dssp             SCEEEEEESSSEEEEEEEC-GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred             CeEEEEEcCCCcceeeccC-CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence            9999999987654433332 34579999999999999999988  5666654 334444433       33489999999


Q ss_pred             CCCceEEEe-ecCC------eEEEeeC
Q psy12456        143 THAHYLASS-SMDR------TLKLYSL  162 (162)
Q Consensus       143 ~~~~~l~s~-s~D~------~i~iw~~  162 (162)
                      +++.++++. +.|+      .+++|++
T Consensus       250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l  276 (434)
T 2oit_A          250 GTYVFAIVYAAADGTLETSPDVVMALL  276 (434)
T ss_dssp             ETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred             cCceEEEEEccCCCccCCCCceEEEEe
Confidence            988887553 3443      3888875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=6e-21  Score=139.71  Aligned_cols=150  Identities=12%  Similarity=0.116  Sum_probs=123.0

Q ss_pred             CcEEEEEeCCCCcEE-EEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEE-EeCCCeEEEEEcccCccee
Q psy12456          9 PTLTTAQLHPDGLIF-GIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT-AADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~-a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~d~~v~~wd~~~~~~~~   86 (162)
                      ..+.+++|+|+|+++ ++++.|+.|++||+++++.+..+..+. .+.+++|+|++++|+. ++.++.|++||+.+.+...
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            458999999999866 677789999999999999998888665 8999999999998754 4567999999998877666


Q ss_pred             EEeeCCCCCeeEEEECCCCCEE-EEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceE-EEeecCCeEEEeeC
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYM-AVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTLKLYSL  162 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iw~~  162 (162)
                      .+..+  ..+.+++|+|+++++ ++++.+  +.+|+....+.+..+..|. .+..+.|+|+++++ ++++.|+.|++||+
T Consensus       111 ~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~  187 (391)
T 1l0q_A          111 TVKTG--KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDT  187 (391)
T ss_dssp             EEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             EEeCC--CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence            55533  358999999999977 566555  7777777777777777665 46999999999877 67788999999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=4.6e-22  Score=148.80  Aligned_cols=154  Identities=18%  Similarity=0.212  Sum_probs=120.9

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCC----------eeeeec-----cCCCCCEEEEEEccCCCEEE----EE
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQ----------KNVTDF-----QLDAGPIQALSFSENGYYLA----TA   68 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~----------~~~~~~-----~~~~~~v~~i~~~~~~~~l~----s~   68 (162)
                      ...++.+++++++.++++++.|+ +++|+...-          ..+..+     -.+..+|.+++|+|++++|+    ++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34678999999999999999988 999875321          011111     11346799999999999999    78


Q ss_pred             eCCCeEEEEEcccC--------cceeEEee--CCCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCceEEEEeecCccc
Q psy12456         69 ADENCVKLWDLRKL--------KNFKTLQL--DPNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQWQELAMFNEHTAM  135 (162)
Q Consensus        69 ~~d~~v~~wd~~~~--------~~~~~~~~--~~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~  135 (162)
                      +.|++|++||+++.        +.+.....  .|...|.+++|+|+ +.++++++.|  +++|+.+....+.....|...
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~  194 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA  194 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence            89999999998754        11111221  23457999999998 8899999887  888988877666667789999


Q ss_pred             EEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        136 VTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       136 v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      |.+++|+|++++|++|+.|++|++||+
T Consensus       195 v~~v~wspdg~~lasgs~dg~v~iwd~  221 (434)
T 2oit_A          195 VTSVCWSPKGKQLAVGKQNGTVVQYLP  221 (434)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             eeEEEEcCCCCEEEEEcCCCcEEEEcc
Confidence            999999999999999999999999984

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=1.8e-20  Score=137.21  Aligned_cols=151  Identities=13%  Similarity=0.150  Sum_probs=125.3

Q ss_pred             CCcEEEEEeCCCCcEE-EEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEE-EEEeCCCeEEEEEcccCcce
Q psy12456          8 GPTLTTAQLHPDGLIF-GIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYL-ATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~-a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~d~~v~~wd~~~~~~~   85 (162)
                      ...+.+++|+|+|+++ ++++.|+.|++||+++++.+..+..+. .+..++|+|+++++ ++++.++.|++||+++.+..
T Consensus       115 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~  193 (391)
T 1l0q_A          115 GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI  193 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence            3467899999999976 788889999999999999988887664 56899999999887 67788999999999887665


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEecc---c--EEEEEeCCceEEEEeecCcccEEEEEECCCCceE-EEeecCCeEEE
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGT---D--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTLKL  159 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~i  159 (162)
                      ..+..  ...+.+++|+|+++++++++.   +  +.+|+....+.+..+..|.. +..++|+|+++++ ++++.|+.|++
T Consensus       194 ~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v  270 (391)
T 1l0q_A          194 DTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSV  270 (391)
T ss_dssp             EEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEec--CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEE
Confidence            55543  346889999999999888763   3  77888777888877777664 7899999999877 67789999999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus       271 ~d~  273 (391)
T 1l0q_A          271 IDT  273 (391)
T ss_dssp             EET
T ss_pred             EEC
Confidence            985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.88  E-value=1e-20  Score=140.22  Aligned_cols=154  Identities=10%  Similarity=0.077  Sum_probs=126.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEE-EEeCCCeEEEEEcccCcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLA-TAADENCVKLWDLRKLKN   84 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d~~v~~wd~~~~~~   84 (162)
                      .+...|++++++|++.++++++.|+.|++||+++++.+..+..|...+.+++|+|++++++ +++.|+.|++||+++.+.
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence            3456899999999999999999999999999999999999988888999999999999885 455899999999987666


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecc--------c--EEEEEeCCceEEEEeecCcccEEEEEECCCCc-eEEEeec
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGT--------D--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH-YLASSSM  153 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~  153 (162)
                      ...+..  ...+.+++|+|++.++++++.        +  +++|+....+.+..+ .|...+.+++|+|+++ .+++++.
T Consensus       247 ~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          247 IRKTDK--IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             EEECCC--CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETT
T ss_pred             EEEecC--CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecC
Confidence            555443  335899999999999988873        3  567776666655544 4566889999999996 4577789


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      |+.|++||+
T Consensus       324 ~~~v~v~d~  332 (433)
T 3bws_A          324 CSKIEVYDL  332 (433)
T ss_dssp             TTEEEEEET
T ss_pred             CCEEEEEEC
Confidence            999999985

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.88  E-value=8.4e-21  Score=140.64  Aligned_cols=151  Identities=15%  Similarity=0.200  Sum_probs=126.1

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeee-----eccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVT-----DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~-----~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      .+.+++|+|++.++++++.|+.|++||+++++.+.     .+..|...|.+++|+|++.++++++.|+.|++||+++.+.
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~  203 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAY  203 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceE
Confidence            45588999988899999999999999999988877     4557888999999999999999999999999999988777


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEec-cc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEee--------c
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAG-TD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSS--------M  153 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--------~  153 (162)
                      ...+.. +...+.+++|+|++.++++++ .+  +++|+....+.+..+..+. .+..++|+|+++++++++        .
T Consensus       204 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~~~  281 (433)
T 3bws_A          204 KATVDL-TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDGKELYIAQFSASNQESG  281 (433)
T ss_dssp             EEEEEC-SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred             EEEEcC-CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCCCEEEEEECCCCccccC
Confidence            666654 345689999999998875544 44  7788877777777766554 499999999999998887        4


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      |+.|++||+
T Consensus       282 dg~i~~~d~  290 (433)
T 3bws_A          282 GGRLGIYSM  290 (433)
T ss_dssp             CEEEEEEET
T ss_pred             CCeEEEEEC
Confidence            889999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.86  E-value=2e-19  Score=133.72  Aligned_cols=152  Identities=13%  Similarity=0.094  Sum_probs=117.7

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCC---cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEE-EEeCCC--eEEEEEcc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDS---QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLA-TAADEN--CVKLWDLR   80 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d~--~v~~wd~~   80 (162)
                      +...+.+++|+|+|+++|+++.++   .|++||+++++.. .+..|...+.+++|+||+++|+ +++.++  .|.+||++
T Consensus       177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~  255 (415)
T 2hqs_A          177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  255 (415)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC
Confidence            456789999999999999999885   9999999988765 4566778899999999999888 666655  48999998


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEeecC-
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD-  154 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D-  154 (162)
                      +.+. ..+.. +...+.+++|+|+|++++.++.+   .++|.+  ...+ ...+..|...+..++|+|++++|+.++.+ 
T Consensus       256 ~~~~-~~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~  332 (415)
T 2hqs_A          256 SGQI-RQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNG  332 (415)
T ss_dssp             TCCE-EECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred             CCCE-EeCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC-EEEEecCCCcccCeEECCCCCEEEEEECcC
Confidence            7553 33322 34568999999999998887653   355543  3333 34455677789999999999999888765 


Q ss_pred             --CeEEEeeC
Q psy12456        155 --RTLKLYSL  162 (162)
Q Consensus       155 --~~i~iw~~  162 (162)
                        ..|.+||+
T Consensus       333 g~~~i~~~d~  342 (415)
T 2hqs_A          333 GQQHIAKQDL  342 (415)
T ss_dssp             SCEEEEEEET
T ss_pred             CceEEEEEEC
Confidence              58999985

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.82  E-value=6.6e-18  Score=125.51  Aligned_cols=151  Identities=11%  Similarity=0.074  Sum_probs=114.4

Q ss_pred             CCCcEEEEEeCCCCcEEE-EeeCCCc--EEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CC--eEEEEEcc
Q psy12456          7 GGPTLTTAQLHPDGLIFG-IGTSDSQ--VQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-EN--CVKLWDLR   80 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a-~g~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~--~v~~wd~~   80 (162)
                      +...+.+++|+|||++++ +++.|+.  |.+||+++++. ..+..|...+..++|+||+++|+.++. ++  .|.+||+.
T Consensus       221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~  299 (415)
T 2hqs_A          221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN  299 (415)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence            345789999999999887 6666655  99999988765 566778788999999999999998876 44  67777887


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCC
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                      +.+. ..+.. +...+..++|+|+|++++.++.+     +.+|+....+. ..+..|. .+..++|+|++++|+.++.|+
T Consensus       300 ~~~~-~~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~  375 (415)
T 2hqs_A          300 GGAP-QRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQG  375 (415)
T ss_dssp             SSCC-EECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred             CCCE-EEEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence            6543 22222 23457889999999999988753     55566555444 3455554 799999999999999888877


Q ss_pred             ---eEEEeeC
Q psy12456        156 ---TLKLYSL  162 (162)
Q Consensus       156 ---~i~iw~~  162 (162)
                         .|.+||+
T Consensus       376 ~~~~l~~~d~  385 (415)
T 2hqs_A          376 MGSVLNLVST  385 (415)
T ss_dssp             TEEEEEEEET
T ss_pred             CccEEEEEEC
Confidence               7888874

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.82  E-value=9.2e-19  Score=137.76  Aligned_cols=146  Identities=16%  Similarity=0.203  Sum_probs=112.1

Q ss_pred             CCcEEEEEeCCCCcEEEEeeC-CC-----cEEEEECCCCeeeeeccCCCC------------------------CEEEEE
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTS-DS-----QVQIWDLKKQKNVTDFQLDAG------------------------PIQALS   57 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~-dg-----~i~~wd~~~~~~~~~~~~~~~------------------------~v~~i~   57 (162)
                      +..++.++|+|||+++++++. |+     .|++||+.+++....+..+..                        .+..++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            567899999999999999998 88     899999999887666654322                        277899


Q ss_pred             EccCCCEEEEEeCCCeEEEEEcccCc--ceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcc
Q psy12456         58 FSENGYYLATAADENCVKLWDLRKLK--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTA  134 (162)
Q Consensus        58 ~~~~~~~l~s~~~d~~v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~  134 (162)
                      |+|||++|++++. +.|.+||+.+.+  ....+.. +...+..++|+|+|++++.++.+ +.+|+....+.......+..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-GEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-SSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-CCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEeccCCcc
Confidence            9999999999987 899999998752  2222322 23468999999999999988755 67777666555544443433


Q ss_pred             c----------------EEEEEECCCCceEEEeecCC
Q psy12456        135 M----------------VTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus       135 ~----------------v~~~~~s~~~~~l~s~s~D~  155 (162)
                      .                +..++||||+++|+.++.|+
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            2                47799999999999988775

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.81  E-value=3.5e-18  Score=119.71  Aligned_cols=152  Identities=9%  Similarity=0.039  Sum_probs=113.5

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC-CeeeeeccCC-CCCEEEEEEccCCCEEEEEe--CCCeEEEEEc--c
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK-QKNVTDFQLD-AGPIQALSFSENGYYLATAA--DENCVKLWDL--R   80 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~-~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~--~d~~v~~wd~--~   80 (162)
                      +...|.+++|+|+|+++++++ ++.|.+||+++ ++.......+ ...+.+++|+|++++|++++  .++..++|.+  .
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~  118 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST  118 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT
T ss_pred             CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECC
Confidence            356789999999999999987 78999999998 8777666555 36788899999999999998  3345566555  3


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEE-Eeccc--EEEEEeCC-ceEEEEeecCcccEEEEEECCCCceEEEee-cCC
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMA-VAGTD--VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHAHYLASSS-MDR  155 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~--~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~D~  155 (162)
                      ..+ ...+.  ....+..++|+|++++++ +++.+  .++|.+.. ......+..|...+..+.|+|++++++.++ .|+
T Consensus       119 ~~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  195 (297)
T 2ojh_A          119 GGT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG  195 (297)
T ss_dssp             CCC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred             CCc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCC
Confidence            322 22222  223488899999999887 44444  67777532 234456677888899999999999887665 588


Q ss_pred             eEEEeeC
Q psy12456        156 TLKLYSL  162 (162)
Q Consensus       156 ~i~iw~~  162 (162)
                      .+++|++
T Consensus       196 ~~~i~~~  202 (297)
T 2ojh_A          196 QMQIWRV  202 (297)
T ss_dssp             SCEEEEE
T ss_pred             CccEEEE
Confidence            9999973

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=7.1e-18  Score=118.11  Aligned_cols=153  Identities=9%  Similarity=0.097  Sum_probs=112.4

Q ss_pred             CCCcEEEEEeCCCCcEEEEee--CCCcEEEEEC--CCCeeeeeccCCCCCEEEEEEccCCCEEE-EEeCCCeEEEEEccc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGT--SDSQVQIWDL--KKQKNVTDFQLDAGPIQALSFSENGYYLA-TAADENCVKLWDLRK   81 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~--~dg~i~~wd~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d~~v~~wd~~~   81 (162)
                      +...+.+++|+|+|+++++++  .++..+||.+  .+++ ...+..+ ..+..++|+|++++|+ +++.++.+++|++..
T Consensus        83 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~  160 (297)
T 2ojh_A           83 ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI  160 (297)
T ss_dssp             CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEEC
Confidence            346788899999999999999  3455666554  4443 3444433 3588999999999887 778899999999753


Q ss_pred             Cc-ceeEEeeCCCCCeeEEEECCCCCEEEEecc-c--EEEEEeC-CceEEEEeecCcccEEEEEECCCCceEEEeecC--
Q psy12456         82 LK-NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-D--VRVFLCK-QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD--  154 (162)
Q Consensus        82 ~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~i~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D--  154 (162)
                      .. ....+. .+...+.+++|+|++++++.++. +  .++|.+. ....+..+..|...+..+.|+|++++|+.++.|  
T Consensus       161 ~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  239 (297)
T 2ojh_A          161 DSGVETRLT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDAD  239 (297)
T ss_dssp             TTCCEEECC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETT
T ss_pred             CCCcceEcc-cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCC
Confidence            22 222222 23456899999999998877653 3  7888775 445566777888889999999999999888766  


Q ss_pred             ---------CeEEEeeC
Q psy12456        155 ---------RTLKLYSL  162 (162)
Q Consensus       155 ---------~~i~iw~~  162 (162)
                               ..|.+||+
T Consensus       240 ~~~~~~~~~~~l~~~d~  256 (297)
T 2ojh_A          240 VFDHPRDLDVRVQLMDM  256 (297)
T ss_dssp             CCSCCSSEEEEEEEEET
T ss_pred             CCcccccCceEEEEEec
Confidence                     56888874

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.79  E-value=3e-17  Score=125.89  Aligned_cols=151  Identities=11%  Similarity=0.182  Sum_probs=116.4

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEEC--CCCeeeeeccCCCCCEEEEEEcc----CCCEEEEEeC-CCeEEEEEcccC
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDL--KKQKNVTDFQLDAGPIQALSFSE----NGYYLATAAD-ENCVKLWDLRKL   82 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~--~~~~~~~~~~~~~~~v~~i~~~~----~~~~l~s~~~-d~~v~~wd~~~~   82 (162)
                      .+..++++|||+++++++.|+.|++||+  .+++.+.++..+ .....++|+|    +++++++++. +++|.+||..+.
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~  258 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  258 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence            3788999999999999999999999999  888888888854 4578999999    9999999984 899999999888


Q ss_pred             cceeEEee----------CCCCCeeEEEECCCCCEEEEe-ccc--EEEEEeCCceEE--EEeecCcccEEEEEECCCCce
Q psy12456         83 KNFKTLQL----------DPNYEIRDLCFDQSGTYMAVA-GTD--VRVFLCKQWQEL--AMFNEHTAMVTGVRFGTHAHY  147 (162)
Q Consensus        83 ~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~-~~~--~~i~~~~~~~~~--~~~~~h~~~v~~~~~s~~~~~  147 (162)
                      +.+..+..          ++...+..+.++|++..+++. ..+  +.+++....+.+  ..+ .+...+.++.|+|++++
T Consensus       259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~  337 (543)
T 1nir_A          259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRY  337 (543)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCE
T ss_pred             ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCE
Confidence            77766553          123357889999987665544 333  555665443322  233 35667888999999997


Q ss_pred             EEE-eecCCeEEEeeC
Q psy12456        148 LAS-SSMDRTLKLYSL  162 (162)
Q Consensus       148 l~s-~s~D~~i~iw~~  162 (162)
                      +.+ +..+++|.+||+
T Consensus       338 l~va~~~~~~v~v~D~  353 (543)
T 1nir_A          338 FMTAANNSNKVAVIDS  353 (543)
T ss_dssp             EEEEEGGGTEEEEEET
T ss_pred             EEEEecCCCeEEEEEC
Confidence            654 456899999985

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.78  E-value=9.8e-19  Score=137.19  Aligned_cols=145  Identities=10%  Similarity=0.063  Sum_probs=108.3

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCC---CEEEEEEccCCCEEEEEeCC---------CeEEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG---PIQALSFSENGYYLATAADE---------NCVKL   76 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~---~v~~i~~~~~~~~l~s~~~d---------~~v~~   76 (162)
                      ..+.+++|+|||+++++ +.||+|++||+.+++....+..|..   .|.+++|||||++|++++.+         +.+.+
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            34677899999998776 7899999999999988777776654   48999999999999999875         67889


Q ss_pred             EEcccCcceeEEeeC--CCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccE-----------------
Q psy12456         77 WDLRKLKNFKTLQLD--PNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMV-----------------  136 (162)
Q Consensus        77 wd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v-----------------  136 (162)
                      ||+.+.+. ..+...  +...+..++|+|+|++++.++.. +.+|+....+.......+...+                 
T Consensus        96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             EECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            99987654 222211  12237789999999999988764 5666555554444444443333                 


Q ss_pred             -EEEEECCCCceEEEeecCC
Q psy12456        137 -TGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus       137 -~~~~~s~~~~~l~s~s~D~  155 (162)
                       ..++||||+++|+.++.|+
T Consensus       175 ~~~~~~SpDg~~la~~~~~~  194 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAIND  194 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEEC
T ss_pred             cceEEECCCCCEEEEEEECC
Confidence             7899999999999887653

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.78  E-value=4e-17  Score=125.20  Aligned_cols=145  Identities=12%  Similarity=0.164  Sum_probs=120.0

Q ss_pred             EeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc--ccCcceeEEeeCC
Q psy12456         15 QLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL--RKLKNFKTLQLDP   92 (162)
Q Consensus        15 ~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~--~~~~~~~~~~~~~   92 (162)
                      +++|++.+++++..|++|.+||..+++.+.++..+.. +..++|+|++++|++++.|++|++||+  .+.+.+..+..  
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec--
Confidence            3899999999999999999999999999999885433 889999999999999999999999999  77666666553  


Q ss_pred             CCCeeEEEECC----CCCEEEEeccc---EEEEEeCCceEEEEeec----------Cc-ccEEEEEECCCCc-eEEEeec
Q psy12456         93 NYEIRDLCFDQ----SGTYMAVAGTD---VRVFLCKQWQELAMFNE----------HT-AMVTGVRFGTHAH-YLASSSM  153 (162)
Q Consensus        93 ~~~v~~~~~~~----~~~~~~~~~~~---~~i~~~~~~~~~~~~~~----------h~-~~v~~~~~s~~~~-~l~s~s~  153 (162)
                      ...++.++|+|    +|+++++++..   +.+|+..+.+.+..+..          |. ..+.++.++|++. ++++...
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            33579999999    99999998742   78888777777776654          22 2689999999765 5677888


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      ++.|.+||+
T Consensus       301 ~g~i~vvd~  309 (543)
T 1nir_A          301 TGKVLLVNY  309 (543)
T ss_dssp             TTEEEEEEC
T ss_pred             CCeEEEEEe
Confidence            999999984

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.78  E-value=5.3e-17  Score=116.30  Aligned_cols=152  Identities=10%  Similarity=0.142  Sum_probs=109.5

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCC-CcEEEEECC--CCe--eeeeccCCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcc-
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSD-SQVQIWDLK--KQK--NVTDFQLDAGPIQALSFSENGYYLATAAD-ENCVKLWDLR-   80 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~d-g~i~~wd~~--~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~~v~~wd~~-   80 (162)
                      ...+..++|+|+|+++++++.+ +.|++|+++  +++  .+..+..+. .+..++|+|+++++++++. ++.|.+||+. 
T Consensus        37 ~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~  115 (343)
T 1ri6_A           37 PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLED  115 (343)
T ss_dssp             SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCC
Confidence            4467789999999988888876 999999997  444  344555444 6788999999998876664 8899999993 


Q ss_pred             --cCcceeEEeeCCCCCeeEEEECCCCCEEEEec-cc--EEEEEeCC-ceEE--E--Eeec-CcccEEEEEECCCCceEE
Q psy12456         81 --KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG-TD--VRVFLCKQ-WQEL--A--MFNE-HTAMVTGVRFGTHAHYLA  149 (162)
Q Consensus        81 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~--~~i~~~~~-~~~~--~--~~~~-h~~~v~~~~~s~~~~~l~  149 (162)
                        ..+......  ....+.+++|+|+++++++++ .+  +.+|+... .+..  .  .... ....+..++|+|++++++
T Consensus       116 ~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~  193 (343)
T 1ri6_A          116 GLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY  193 (343)
T ss_dssp             TEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred             Ccccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence              323333332  233578899999999887775 33  77777765 3221  1  2232 344688899999999665


Q ss_pred             -EeecCCeEEEeeC
Q psy12456        150 -SSSMDRTLKLYSL  162 (162)
Q Consensus       150 -s~s~D~~i~iw~~  162 (162)
                       ++..++.|++|++
T Consensus       194 ~~~~~~~~i~~~~~  207 (343)
T 1ri6_A          194 CVNELNSSVDVWEL  207 (343)
T ss_dssp             EEETTTTEEEEEES
T ss_pred             EEeCCCCEEEEEEe
Confidence             4457899999985

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.78  E-value=1.4e-16  Score=114.03  Aligned_cols=153  Identities=11%  Similarity=0.166  Sum_probs=111.0

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeC-CCcEEEEECCCCee-eeeccCCCCCEEEEEEccCCCEEEEEeCCC---eEEEEEccc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQKN-VTDFQLDAGPIQALSFSENGYYLATAADEN---CVKLWDLRK   81 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~---~v~~wd~~~   81 (162)
                      +...+ .++++|+|+++++++. ++.|.+||+++++. ...+..+..+..+++|+|++++++++..++   .|.+||+.+
T Consensus        39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            34555 8999999995555544 89999999999887 777776766665599999999999655553   899999987


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCEEEEecc---c-EEEEEeCCceEE----EEeecCcccEEEEEECCCCceE-EEee
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---D-VRVFLCKQWQEL----AMFNEHTAMVTGVRFGTHAHYL-ASSS  152 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~-~~i~~~~~~~~~----~~~~~h~~~v~~~~~s~~~~~l-~s~s  152 (162)
                      .+....+...  .....++|+|+++++++++.   . +.+|.......+    ............++|+|+++++ +++.
T Consensus       118 ~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  195 (331)
T 3u4y_A          118 NKFISTIPIP--YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL  195 (331)
T ss_dssp             TEEEEEEECC--TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET
T ss_pred             CCeEEEEECC--CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC
Confidence            7766655432  34689999999986655533   3 677776532111    1222344558899999999855 5555


Q ss_pred             cCCeEEEeeC
Q psy12456        153 MDRTLKLYSL  162 (162)
Q Consensus       153 ~D~~i~iw~~  162 (162)
                      .++.|++||+
T Consensus       196 ~~~~v~v~d~  205 (331)
T 3u4y_A          196 IGNSIGILET  205 (331)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCCeEEEEEC
Confidence            7899999985

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.77  E-value=3.2e-16  Score=113.12  Aligned_cols=154  Identities=12%  Similarity=0.199  Sum_probs=109.7

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECC-CCeee--eeccCC-CCCEEEEEEccCCCEEEE-EeCCCeEEEEEccc-
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK-KQKNV--TDFQLD-AGPIQALSFSENGYYLAT-AADENCVKLWDLRK-   81 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~-~~~~~--~~~~~~-~~~v~~i~~~~~~~~l~s-~~~d~~v~~wd~~~-   81 (162)
                      ...+.+++++|+|+++++...++.|.+||++ +++..  ..+..+ ......++|+||+++++. ...++.+.+|++.. 
T Consensus       140 ~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~  219 (347)
T 3hfq_A          140 GSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ  219 (347)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence            3458889999999988888888999999998 44332  222322 235778999999996665 45788999999874 


Q ss_pred             -Ccc--eeEEeeCCC-----CCeeEEEECCCCCEEEEecc-c--EEEEEeC---CceEEEEeecCcccEEEEEECCCCce
Q psy12456         82 -LKN--FKTLQLDPN-----YEIRDLCFDQSGTYMAVAGT-D--VRVFLCK---QWQELAMFNEHTAMVTGVRFGTHAHY  147 (162)
Q Consensus        82 -~~~--~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~-~--~~i~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~  147 (162)
                       .+.  .........     ..+..++|+|+|++++++.. +  +.+|+..   ....+..+..+...+..++|+|++++
T Consensus       220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~  299 (347)
T 3hfq_A          220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAF  299 (347)
T ss_dssp             TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSE
T ss_pred             CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCE
Confidence             221  122221111     24778999999998755432 3  7788875   33556666777777899999999998


Q ss_pred             EEEeec-CCeEEEee
Q psy12456        148 LASSSM-DRTLKLYS  161 (162)
Q Consensus       148 l~s~s~-D~~i~iw~  161 (162)
                      |+.++. ++.|.+|+
T Consensus       300 l~v~~~~~~~v~v~~  314 (347)
T 3hfq_A          300 VVVVNQNTDNATLYA  314 (347)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCcEEEEE
Confidence            877765 48999995

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.76  E-value=4.1e-16  Score=112.60  Aligned_cols=156  Identities=12%  Similarity=0.219  Sum_probs=107.3

Q ss_pred             CCCcEEEEEeCCCCcEEEEee-CCCcEEEEECCCC---eeeeeccCC---------CCCEEEEEEccCCCEEEEEeCCCe
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGT-SDSQVQIWDLKKQ---KNVTDFQLD---------AGPIQALSFSENGYYLATAADENC   73 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~-~dg~i~~wd~~~~---~~~~~~~~~---------~~~v~~i~~~~~~~~l~s~~~d~~   73 (162)
                      ++..+..++|+|+|+++++++ .++.+.+||++..   +.+..+...         ...+..++|+|+++++++...++.
T Consensus        84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~  163 (347)
T 3hfq_A           84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDK  163 (347)
T ss_dssp             ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTE
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCE
Confidence            345667899999999887777 6899999999632   333333221         124888999999997777777889


Q ss_pred             EEEEEcc-cCcc--eeEEeeCCCCCeeEEEECCCCCEEEEecc-c--EEEEEeCC--ce--EEEEeecCc------ccEE
Q psy12456         74 VKLWDLR-KLKN--FKTLQLDPNYEIRDLCFDQSGTYMAVAGT-D--VRVFLCKQ--WQ--ELAMFNEHT------AMVT  137 (162)
Q Consensus        74 v~~wd~~-~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~i~~~~~--~~--~~~~~~~h~------~~v~  137 (162)
                      |.+||+. +.+.  ...........+..++|+|+|+++++++. +  +.+|.+..  .+  .+..+....      ..+.
T Consensus       164 v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  243 (347)
T 3hfq_A          164 VYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAA  243 (347)
T ss_dssp             EEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEE
T ss_pred             EEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcce
Confidence            9999997 3322  12223333335788999999997766533 2  67777653  22  233333322      3588


Q ss_pred             EEEECCCCceE-EEeecCCeEEEeeC
Q psy12456        138 GVRFGTHAHYL-ASSSMDRTLKLYSL  162 (162)
Q Consensus       138 ~~~~s~~~~~l-~s~s~D~~i~iw~~  162 (162)
                      .++|+|+++++ ++...++.|.+|++
T Consensus       244 ~i~~spdG~~l~v~~~~~~~v~v~~~  269 (347)
T 3hfq_A          244 AIRLSHDGHFLYVSNRGYNTLAVFAV  269 (347)
T ss_dssp             EEEECTTSCEEEEEEETTTEEEEEEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEEE
Confidence            99999999977 56667899999984

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.76  E-value=1.3e-16  Score=114.30  Aligned_cols=152  Identities=14%  Similarity=0.146  Sum_probs=107.5

Q ss_pred             cEEEEEeCCCCcEEEEeeC-CCcEEEEEC---CCCeeeeeccCCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEccc-Cc
Q psy12456         10 TLTTAQLHPDGLIFGIGTS-DSQVQIWDL---KKQKNVTDFQLDAGPIQALSFSENGYYLATAA-DENCVKLWDLRK-LK   83 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~-dg~i~~wd~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d~~v~~wd~~~-~~   83 (162)
                      .+..++|+|+|+++++++. ++.|.+||+   +..+.+..+..+ ..+..++|+|+++++++++ .++.|.+||+.+ .+
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            6778999999997766654 889999999   444555555544 3578899999999888887 899999999976 33


Q ss_pred             cee----EEeeCCCCCeeEEEECCCCCEEEEec-cc--EEEEEeCC--c--eEEEEee---cC---cccEEEEEECCCCc
Q psy12456         84 NFK----TLQLDPNYEIRDLCFDQSGTYMAVAG-TD--VRVFLCKQ--W--QELAMFN---EH---TAMVTGVRFGTHAH  146 (162)
Q Consensus        84 ~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~-~~--~~i~~~~~--~--~~~~~~~---~h---~~~v~~~~~s~~~~  146 (162)
                      ...    .........+..++|+|+++++++++ .+  +.+|+...  .  .......   ..   ...+..++|+|+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~  243 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  243 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCC
Confidence            221    23333344678899999999776554 33  77777642  1  1222222   11   33577899999998


Q ss_pred             eEE-EeecCCeEEEeeC
Q psy12456        147 YLA-SSSMDRTLKLYSL  162 (162)
Q Consensus       147 ~l~-s~s~D~~i~iw~~  162 (162)
                      +++ +...|+.|++|++
T Consensus       244 ~l~v~~~~~~~i~v~d~  260 (343)
T 1ri6_A          244 HLYACDRTASLITVFSV  260 (343)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             EEEEEecCCCEEEEEEE
Confidence            776 5557999999984

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.76  E-value=2.6e-16  Score=112.41  Aligned_cols=149  Identities=15%  Similarity=0.106  Sum_probs=115.4

Q ss_pred             cEEEEEeCCCCcEEEEee------------CCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q psy12456         10 TLTTAQLHPDGLIFGIGT------------SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW   77 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~------------~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~w   77 (162)
                      .+..++++|+|++++++.            .++.|.+||+++++.+..+... ..+..++|+|++++++++  ++.|.+|
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-CCcceeEECCCCCEEEEe--CCeEEEE
Confidence            455789999999888886            5799999999998888777653 456788999999988887  5789999


Q ss_pred             EcccCcceeEEeeCC-----------------------------------------------------------------
Q psy12456         78 DLRKLKNFKTLQLDP-----------------------------------------------------------------   92 (162)
Q Consensus        78 d~~~~~~~~~~~~~~-----------------------------------------------------------------   92 (162)
                      |+.+.+....+....                                                                 
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  239 (337)
T 1pby_B          160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence            987654433222111                                                                 


Q ss_pred             CCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         93 NYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        93 ~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...+..++|+|+++++++++..+.+|+....+.+..+..+ ..+.+++|+|+++++++++.|+.|++||+
T Consensus       240 ~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             CCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            0123458999999999988666888888877777766644 45788999999998888889999999985

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.76  E-value=2e-16  Score=113.87  Aligned_cols=150  Identities=13%  Similarity=0.035  Sum_probs=117.3

Q ss_pred             EEEEEeCCCCcEEEEee--CCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456         11 LTTAQLHPDGLIFGIGT--SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      +..++++|+|++++++.  .++.|.+||+++++.+..+..+...+..++|+|+++++++++.++.+.+||+.+.+....+
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~  222 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK  222 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence            68899999999776665  4789999999999998888755556788999999999999999999999999887766655


Q ss_pred             eeC---CCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecCcccEEEEEECCCCceE-EEeecCCeEEEee
Q psy12456         89 QLD---PNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTLKLYS  161 (162)
Q Consensus        89 ~~~---~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iw~  161 (162)
                      ...   +...+..++|+|++.++.+++.+   +.+|+..+.+.+..+.....  ..+.|+|+++++ ++...++.|.+||
T Consensus       223 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          223 KLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             ECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEE
Confidence            541   23346789999999977776543   66777767766666654432  568999999855 5555789999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       301 ~  301 (353)
T 3vgz_A          301 A  301 (353)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.76  E-value=1.1e-15  Score=110.88  Aligned_cols=152  Identities=14%  Similarity=0.225  Sum_probs=105.1

Q ss_pred             CcEEEEEeCCCCcEEE-EeeCCCcEEEEECCCCee------e------eec-cCCCCCEEEEEEccCCCEEEEEe-CCCe
Q psy12456          9 PTLTTAQLHPDGLIFG-IGTSDSQVQIWDLKKQKN------V------TDF-QLDAGPIQALSFSENGYYLATAA-DENC   73 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a-~g~~dg~i~~wd~~~~~~------~------~~~-~~~~~~v~~i~~~~~~~~l~s~~-~d~~   73 (162)
                      ..+.+++|+|+|++++ +...++.+.+|+++....      +      ..+ ..+......++|+|+++++++++ .++.
T Consensus       155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~  234 (361)
T 3scy_A          155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT  234 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred             CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence            3467899999999554 444589999998875431      1      111 12344578999999999887777 6899


Q ss_pred             EEEEEcccCcc--eeEEeeC--CCCCeeEEEECCCCCEEEEecc----cEEEEEeC----CceEEEEeecCcccEEEEEE
Q psy12456         74 VKLWDLRKLKN--FKTLQLD--PNYEIRDLCFDQSGTYMAVAGT----DVRVFLCK----QWQELAMFNEHTAMVTGVRF  141 (162)
Q Consensus        74 v~~wd~~~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~----~~~i~~~~----~~~~~~~~~~h~~~v~~~~~  141 (162)
                      |.+||+.+.+.  .......  .......++|+|+|+++++++.    .+.+|...    ....+..+.. ...+.+++|
T Consensus       235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~  313 (361)
T 3scy_A          235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFII  313 (361)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEE
T ss_pred             EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEE
Confidence            99999975432  2222211  1133578999999998866543    27788775    2234444554 456789999


Q ss_pred             CCCCceEEEee-cCCeEEEee
Q psy12456        142 GTHAHYLASSS-MDRTLKLYS  161 (162)
Q Consensus       142 s~~~~~l~s~s-~D~~i~iw~  161 (162)
                      +|++++|+.++ .++.|.+|+
T Consensus       314 spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          314 TPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             CTTSCEEEEEETTTTEEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEE
Confidence            99999887776 678999975

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.75  E-value=6.8e-16  Score=111.10  Aligned_cols=152  Identities=13%  Similarity=0.047  Sum_probs=115.8

Q ss_pred             cEEEEEeCCCCcE-EEEeeCCCcEEEEECCCCeeeeeccCCCCC---------EEEEEEccCCCEEEEEe--CCCeEEEE
Q psy12456         10 TLTTAQLHPDGLI-FGIGTSDSQVQIWDLKKQKNVTDFQLDAGP---------IQALSFSENGYYLATAA--DENCVKLW   77 (162)
Q Consensus        10 ~v~~~~~~~~g~~-~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~---------v~~i~~~~~~~~l~s~~--~d~~v~~w   77 (162)
                      .+..++++|+|++ +++...++.|.+||.++++.+..+..+...         +..++|+|++++++.++  .++.|.+|
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~  169 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVV  169 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEE
Confidence            3567889999984 555566899999999999988887765322         68899999999877776  47899999


Q ss_pred             EcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeec----CcccEEEEEECCCCceEEEe
Q psy12456         78 DLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE----HTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        78 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~----h~~~v~~~~~s~~~~~l~s~  151 (162)
                      |..+.+....+.. ....+..++|+|+++++++++.+  +.+|+....+.+..+..    +...+..++|+|+++++..+
T Consensus       170 d~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          170 DGGNIKLKTAIQN-TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             ETTTTEEEEEECC-CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEEecC-CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence            9988776665542 22346889999999988888766  56666666766666553    56678899999999866555


Q ss_pred             e-cCCeEEEeeC
Q psy12456        152 S-MDRTLKLYSL  162 (162)
Q Consensus       152 s-~D~~i~iw~~  162 (162)
                      + .++.|.+||+
T Consensus       249 ~~~~~~v~~~d~  260 (353)
T 3vgz_A          249 DSKAAEVLVVDT  260 (353)
T ss_dssp             ESSSSEEEEEET
T ss_pred             eCCCCEEEEEEC
Confidence            4 4589999984

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.74  E-value=5.2e-17  Score=127.44  Aligned_cols=152  Identities=11%  Similarity=0.027  Sum_probs=109.8

Q ss_pred             cEEEEEeCCCCcEEEEeeCC---------CcEEEEECCCCee--eeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSD---------SQVQIWDLKKQKN--VTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD   78 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~d---------g~i~~wd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd   78 (162)
                      .|..++|+|||+++++++.+         +.+.+||+++++.  +.....|...+..++|||||++|+.++. +.|.+||
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~  140 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA  140 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence            48899999999999999875         7788999998875  2222334445888999999999999886 7899999


Q ss_pred             cccCcceeEEeeCCCC-----------------CeeEEEECCCCCEEEEeccc---------------------------
Q psy12456         79 LRKLKNFKTLQLDPNY-----------------EIRDLCFDQSGTYMAVAGTD---------------------------  114 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~~~~~~---------------------------  114 (162)
                      +.+.+.......+...                 .+..++|+|+|++|+.++.+                           
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence            9876554433322111                 23789999999999987632                           


Q ss_pred             ---------EEEEEeCCceEEEEeecC------cccEEEEEECCCCceEEEeec----CCeEEEeeC
Q psy12456        115 ---------VRVFLCKQWQELAMFNEH------TAMVTGVRFGTHAHYLASSSM----DRTLKLYSL  162 (162)
Q Consensus       115 ---------~~i~~~~~~~~~~~~~~h------~~~v~~~~~s~~~~~l~s~s~----D~~i~iw~~  162 (162)
                               +.+|+....+....+..+      ...+..++||||++++++.+.    +..|++||+
T Consensus       221 ~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred             CCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence                     344554444433344443      667999999999998876643    357888874

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.73  E-value=8.4e-17  Score=126.64  Aligned_cols=153  Identities=12%  Similarity=0.080  Sum_probs=112.5

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCC----------------EEEEEEccCCCEEEEEeC
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP----------------IQALSFSENGYYLATAAD   70 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~----------------v~~i~~~~~~~~l~s~~~   70 (162)
                      +...+..++|+|||+++|.++ ++.|.+||+.+++.......+...                +.+++|+|||++|++++.
T Consensus       150 ~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~  228 (741)
T 2ecf_A          150 GEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI  228 (741)
T ss_dssp             SSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE
T ss_pred             CCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE
Confidence            346789999999999999887 468999999988776554444332                367999999999999987


Q ss_pred             CC---------------------------------eEEEEEccc-CcceeEEee-CCCCCeeEEEECCCCCEEEEecc--
Q psy12456         71 EN---------------------------------CVKLWDLRK-LKNFKTLQL-DPNYEIRDLCFDQSGTYMAVAGT--  113 (162)
Q Consensus        71 d~---------------------------------~v~~wd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~--  113 (162)
                      |+                                 .|.+||+.+ .+....... .+...+..++| |+|++|+.+..  
T Consensus       229 d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~  307 (741)
T 2ecf_A          229 DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR  307 (741)
T ss_dssp             ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET
T ss_pred             cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc
Confidence            65                                 788899876 554322211 23345889999 99999987653  


Q ss_pred             ---c--EEEEEeCCceEEEEeecCcc----cEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        114 ---D--VRVFLCKQWQELAMFNEHTA----MVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       114 ---~--~~i~~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                         +  +.+|+..+.+....+..+..    .+..++|+|+++++++++.|+.+++|.
T Consensus       308 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~  364 (741)
T 2ecf_A          308 DQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYR  364 (741)
T ss_dssp             TSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEE
T ss_pred             cCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEE
Confidence               2  45555555555555554443    356889999999999999999888885

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.73  E-value=2.1e-16  Score=123.88  Aligned_cols=150  Identities=10%  Similarity=0.052  Sum_probs=110.2

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc-----Cc
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRK-----LK   83 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~-----~~   83 (162)
                      ..|++++|+|| ..++.+ .++.+++||+.+++.... ..+...+..++|+|||++|+++ .|+.|.+||+.+     .+
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            56999999999 555554 359999999988876543 3355667889999999999985 679999999987     55


Q ss_pred             ceeEEeeCCCC-------------CeeEEEECCCCCEEEEec---------------------------------cc--E
Q psy12456         84 NFKTLQLDPNY-------------EIRDLCFDQSGTYMAVAG---------------------------------TD--V  115 (162)
Q Consensus        84 ~~~~~~~~~~~-------------~v~~~~~~~~~~~~~~~~---------------------------------~~--~  115 (162)
                      ...........             .+.+++|+|+|++|+.++                                 .+  +
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            43322221111             147899999999999986                                 22  4


Q ss_pred             EEEEeCCceEEEEe--ecCcccEEEEEECCCCceEEEeecCC-----eEEEeeC
Q psy12456        116 RVFLCKQWQELAMF--NEHTAMVTGVRFGTHAHYLASSSMDR-----TLKLYSL  162 (162)
Q Consensus       116 ~i~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~D~-----~i~iw~~  162 (162)
                      .+|+....+.....  ..|...+..++|+|++++++.++.|+     .|.+||+
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~  291 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDA  291 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEET
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEEC
Confidence            55555555443332  25777899999999999999888776     8999984

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.73  E-value=2.1e-17  Score=129.85  Aligned_cols=139  Identities=11%  Similarity=0.172  Sum_probs=100.9

Q ss_pred             EEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCC---CEEEEEEccCCCEEEEEeC---------CCeEEEEEcc
Q psy12456         13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG---PIQALSFSENGYYLATAAD---------ENCVKLWDLR   80 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~---~v~~i~~~~~~~~l~s~~~---------d~~v~~wd~~   80 (162)
                      .++|+|+|++++++ .|+.|++||+.+++....+..+..   .+.+++|||||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            57899999766655 699999999999887766654432   4789999999999999876         7899999998


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEe-ecCcccE-----------------EEEEE
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMF-NEHTAMV-----------------TGVRF  141 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~-~~h~~~v-----------------~~~~~  141 (162)
                      +.+.......  ...+..++|+|+|+.|+.+..+ +.+|+....+..... .++...|                 ..++|
T Consensus        99 ~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w  176 (719)
T 1z68_A           99 NGEFVRGNEL--PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW  176 (719)
T ss_dssp             TTEECCSSCC--CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred             CCccccceec--CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence            7554211111  1347889999999999987644 666655444433221 2332222                 47999


Q ss_pred             CCCCceEEEeecC
Q psy12456        142 GTHAHYLASSSMD  154 (162)
Q Consensus       142 s~~~~~l~s~s~D  154 (162)
                      ||||++|+.++.|
T Consensus       177 SPDG~~la~~~~d  189 (719)
T 1z68_A          177 SPNGKFLAYAEFN  189 (719)
T ss_dssp             CTTSSEEEEEEEE
T ss_pred             CCCCCEEEEEEEC
Confidence            9999999998866

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.72  E-value=1e-15  Score=124.96  Aligned_cols=148  Identities=16%  Similarity=0.140  Sum_probs=120.7

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEE-EEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQ-IWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~-~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      .+..++|+ ||+.+++++.++.+. +||+.+++... +..|...+..++|+||+++|++++.++.|++||+.+.+.....
T Consensus       339 ~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~  416 (1045)
T 1k32_A          339 RYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE  416 (1045)
T ss_dssp             EEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec
Confidence            78899999 999999999888888 99998776543 4467788999999999999999999999999999876654444


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEecc------------cEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGT------------DVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      .. +...+..++|+|+|++++.++.            .+.+|+....+ +..+..|...+..+.|+|++++++.++.++.
T Consensus       417 ~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~  494 (1045)
T 1k32_A          417 RS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSL  494 (1045)
T ss_dssp             EC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCC
T ss_pred             cC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccC
Confidence            33 4446789999999999988754            35666666555 6667788888999999999999999988877


Q ss_pred             EEEee
Q psy12456        157 LKLYS  161 (162)
Q Consensus       157 i~iw~  161 (162)
                      .+.|+
T Consensus       495 ~~~~~  499 (1045)
T 1k32_A          495 DPSPD  499 (1045)
T ss_dssp             CCEEC
T ss_pred             CcCcc
Confidence            77775

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.72  E-value=1.7e-16  Score=129.57  Aligned_cols=148  Identities=12%  Similarity=0.144  Sum_probs=120.6

Q ss_pred             cEEEEEeC-CCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCC-CEEEEEEccCCCEEEEEeCCCeEE-EEEcccCccee
Q psy12456         10 TLTTAQLH-PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG-PIQALSFSENGYYLATAADENCVK-LWDLRKLKNFK   86 (162)
Q Consensus        10 ~v~~~~~~-~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~s~~~d~~v~-~wd~~~~~~~~   86 (162)
                      .+..++|+ |||+++|+++ ++.+.+|++..++... +..|.. .+..++|+ +++.++.++.+..+. +||+...+. .
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~-~  372 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA-E  372 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE-E
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc-e
Confidence            58899999 9999999888 7899999998776543 556666 89999999 999999999888888 889875443 2


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCC---------
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR---------  155 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~---------  155 (162)
                      .+. .+...+..++|+|+|+++++++.+  +.+|+..+.+.......|...+..++|||++++++.++.++         
T Consensus       373 ~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~  451 (1045)
T 1k32_A          373 KFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM  451 (1045)
T ss_dssp             ECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred             Eec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence            233 344568999999999999998876  66777777766666678999999999999999998887654         


Q ss_pred             -eEEEeeC
Q psy12456        156 -TLKLYSL  162 (162)
Q Consensus       156 -~i~iw~~  162 (162)
                       .|++||+
T Consensus       452 ~~i~l~d~  459 (1045)
T 1k32_A          452 QAIHVYDM  459 (1045)
T ss_dssp             EEEEEEET
T ss_pred             CeEEEEEC
Confidence             8999985

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.71  E-value=3.1e-15  Score=107.03  Aligned_cols=145  Identities=4%  Similarity=0.057  Sum_probs=106.5

Q ss_pred             EeCCC-CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcccCcc-eeEEeeC
Q psy12456         15 QLHPD-GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-ENCVKLWDLRKLKN-FKTLQLD   91 (162)
Q Consensus        15 ~~~~~-g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d~~v~~wd~~~~~~-~~~~~~~   91 (162)
                      .|.++ +.++++...++.|++||+.+++.+..+..+..+. .++|+|+++++++++. ++.|.+||+.+.+. ......+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            34554 4457888889999999999999888887766667 9999999997766665 88999999987665 4444433


Q ss_pred             CCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEEeecCcccEEEEEECCCCceEE-EeecCCe-EEEeeC
Q psy12456         92 PNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLA-SSSMDRT-LKLYSL  162 (162)
Q Consensus        92 ~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~D~~-i~iw~~  162 (162)
                       ..+..+++|+|++++++++..+     +.+|+....+.+..+..+. ....++|+|++++++ +...++. +.+|++
T Consensus        83 -~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           83 -QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             -SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             -CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEE
Confidence             3334449999999988865433     5677777777776666544 468999999998554 4455677 999874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.71  E-value=5.4e-16  Score=111.36  Aligned_cols=146  Identities=10%  Similarity=0.028  Sum_probs=107.1

Q ss_pred             EEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCC-CCEEEEEEccCCCEEE-EEeCCCeEEEEEcccCcceeEEee
Q psy12456         13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLA-TAADENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~-s~~~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      .+++++++.++++++.+++|.+||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+.+....+..
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45688999999999999999999999999888887553 2467899999998654 555789999999987766555543


Q ss_pred             CC-----CCCeeEEEECCCCCEEEEec--------------ccEEEEEeCCc---eEEEEeecCcccEEEEEECCCCceE
Q psy12456         91 DP-----NYEIRDLCFDQSGTYMAVAG--------------TDVRVFLCKQW---QELAMFNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        91 ~~-----~~~v~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l  148 (162)
                      ..     ...+..++|+|+++++++++              ..+.+|+..+.   +.+..+..+ ..+.+++|+|+++.+
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~l~  162 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAADDGSLY  162 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECTTSCEE
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECCCCcEE
Confidence            22     12267889999999999887              33666666552   223333333 358889999999944


Q ss_pred             EEeecCCeEEEeeC
Q psy12456        149 ASSSMDRTLKLYSL  162 (162)
Q Consensus       149 ~s~s~D~~i~iw~~  162 (162)
                       .++.+  |.+||+
T Consensus       163 -~~~~~--i~~~d~  173 (349)
T 1jmx_B          163 -VAGPD--IYKMDV  173 (349)
T ss_dssp             -EESSS--EEEECT
T ss_pred             -EccCc--EEEEeC
Confidence             44433  898874

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.70  E-value=2.4e-15  Score=108.01  Aligned_cols=117  Identities=15%  Similarity=0.161  Sum_probs=86.3

Q ss_pred             cEEEEEeCCCCcEE-EEeeCCCcEEEEECCCCeeeeeccCCCC------CEEEEEEccCCCEEEEEeCC-----------
Q psy12456         10 TLTTAQLHPDGLIF-GIGTSDSQVQIWDLKKQKNVTDFQLDAG------PIQALSFSENGYYLATAADE-----------   71 (162)
Q Consensus        10 ~v~~~~~~~~g~~~-a~g~~dg~i~~wd~~~~~~~~~~~~~~~------~v~~i~~~~~~~~l~s~~~d-----------   71 (162)
                      .+..++++|+|+++ +++..++.|.+||+++++.+..+..+..      .+..++|+|+++++++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            46788999999854 5666789999999999988877764322      26788999999999999865           


Q ss_pred             -CeEEEEEcccCcc---eeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEe
Q psy12456         72 -NCVKLWDLRKLKN---FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMF  129 (162)
Q Consensus        72 -~~v~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  129 (162)
                       +.|.+||+.+.+.   ......  ...+.+++|+|+++ +.+++.++.+++..+.+.+..+
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~-l~~~~~~i~~~d~~~~~~~~~~  182 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAADDGS-LYVAGPDIYKMDVKTGKYTVAL  182 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEECTTSC-EEEESSSEEEECTTTCCEEEEE
T ss_pred             CCeEEEEECCCccccceeeeccC--CCcccceeECCCCc-EEEccCcEEEEeCCCCceeccc
Confidence             8999999986332   233322  22478899999999 5566777877776665554443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.70  E-value=1.1e-16  Score=125.73  Aligned_cols=150  Identities=18%  Similarity=0.155  Sum_probs=104.5

Q ss_pred             cEEEEEeCCCCcEEEEeeC---------CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456         10 TLTTAQLHPDGLIFGIGTS---------DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      .+.+++|+|||+++|+++.         ++.|++||+++++.+...+. ...+..++|||||++|+.+. ++.|++||+.
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~  138 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP  138 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence            3778999999999998876         78999999998876321111 24578899999999999986 6799999997


Q ss_pred             cCcceeEEeeCCCC-----------------CeeEEEECCCCCEEEEeccc-----------------------------
Q psy12456         81 KLKNFKTLQLDPNY-----------------EIRDLCFDQSGTYMAVAGTD-----------------------------  114 (162)
Q Consensus        81 ~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~~~~~~-----------------------------  114 (162)
                      +.+...........                 ....++|+|+|++|+.++.+                             
T Consensus       139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g  218 (719)
T 1z68_A          139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG  218 (719)
T ss_dssp             TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred             CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence            65543221111111                 12479999999999987643                             


Q ss_pred             -------EEEEEeCCceEE--------EEeecCcccEEEEEECCCCceEEEeecC--C--eEEEee
Q psy12456        115 -------VRVFLCKQWQEL--------AMFNEHTAMVTGVRFGTHAHYLASSSMD--R--TLKLYS  161 (162)
Q Consensus       115 -------~~i~~~~~~~~~--------~~~~~h~~~v~~~~~s~~~~~l~s~s~D--~--~i~iw~  161 (162)
                             +.+|+....+..        ..+.+|...+..++||||++++++....  +  .|.+||
T Consensus       219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence                   334444443321        1134688889999999998877764432  2  367776

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.70  E-value=2.1e-15  Score=118.18  Aligned_cols=144  Identities=17%  Similarity=0.144  Sum_probs=108.5

Q ss_pred             EEEEEeCCCCcEEEEee---------------------------------CCCcEEEEECCCCeeeeecc--CCCCCEEE
Q psy12456         11 LTTAQLHPDGLIFGIGT---------------------------------SDSQVQIWDLKKQKNVTDFQ--LDAGPIQA   55 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~---------------------------------~dg~i~~wd~~~~~~~~~~~--~~~~~v~~   55 (162)
                      +.++.|+|||++|++++                                 .+..|.+||+++++......  .|...+..
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  262 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN  262 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence            57899999999999987                                 45779999999887654442  45667999


Q ss_pred             EEEccCCCEEEEEeCCC-----eEEEEEcccCcceeEEe-eCCC---CCeeEEEECC--CCCEEEEeccc--EEEEEeC-
Q psy12456         56 LSFSENGYYLATAADEN-----CVKLWDLRKLKNFKTLQ-LDPN---YEIRDLCFDQ--SGTYMAVAGTD--VRVFLCK-  121 (162)
Q Consensus        56 i~~~~~~~~l~s~~~d~-----~v~~wd~~~~~~~~~~~-~~~~---~~v~~~~~~~--~~~~~~~~~~~--~~i~~~~-  121 (162)
                      ++|+||+++|++++.++     .|.+||+.+.+...... ....   ..+.++.|+|  +|+++++++.+  .++|.+. 
T Consensus       263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~  342 (706)
T 2z3z_A          263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDT  342 (706)
T ss_dssp             EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEET
T ss_pred             EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEEC
Confidence            99999999999987775     89999998763332222 1111   1246789999  99998888765  6788775 


Q ss_pred             CceEEEEeecCcccEEE-EEECCCCceEEEeecC
Q psy12456        122 QWQELAMFNEHTAMVTG-VRFGTHAHYLASSSMD  154 (162)
Q Consensus       122 ~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~s~D  154 (162)
                      ....+..+..|...+.. +.|+|+++.++.++.+
T Consensus       343 ~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~  376 (706)
T 2z3z_A          343 TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE  376 (706)
T ss_dssp             TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred             CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence            45667777788888877 7999999877655443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.69  E-value=2.6e-15  Score=107.17  Aligned_cols=139  Identities=12%  Similarity=0.109  Sum_probs=106.5

Q ss_pred             cEEEEeeCCCcEEEEECCCCeeeeeccCCCC--CEEEEEEccCCCEE-EEEeCCCeEEEEEcccCcceeEEeeCCC----
Q psy12456         21 LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG--PIQALSFSENGYYL-ATAADENCVKLWDLRKLKNFKTLQLDPN----   93 (162)
Q Consensus        21 ~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l-~s~~~d~~v~~wd~~~~~~~~~~~~~~~----   93 (162)
                      .++++++.++.|.+||+.+++.+..+.....  .+..++|+|+++++ +++..++.|.+||+.+.+....+.....    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4788999999999999999998888764432  46789999999765 5556678999999988776655553221    


Q ss_pred             CCeeEEEECCCCCEEEEec--------------ccEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         94 YEIRDLCFDQSGTYMAVAG--------------TDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      ..+..++|+|+++++++++              ..+.+|+....+.+..+.. ...+..+.|+|++++++.+  ++.|.+
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence            1467889999999888875              3377777777766666654 3457788999999988777  688999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus       159 ~d~  161 (337)
T 1pby_B          159 MDP  161 (337)
T ss_dssp             EET
T ss_pred             EEC
Confidence            984

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.67  E-value=1.6e-14  Score=105.41  Aligned_cols=156  Identities=12%  Similarity=0.088  Sum_probs=108.4

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeC-CCcEEEEECC-CCeee--eecc--CCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTS-DSQVQIWDLK-KQKNV--TDFQ--LDAGPIQALSFSENGYYLATAAD-ENCVKLWDL   79 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~-~~~~~--~~~~--~~~~~v~~i~~~~~~~~l~s~~~-d~~v~~wd~   79 (162)
                      ++..+..++|+|||++++++.. ++.|++||++ +++..  ..+.  .|...+..++|+|+++++++++. ++.+.+|++
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~  222 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence            4567889999999998877654 6899999998 66542  3343  23556899999999999888775 689999987


Q ss_pred             cc--Ccce---eEEeeCCC-----C-------CeeEEE-ECCCCCEEEEecc--------cEEEEEeC-CceEEE---Ee
Q psy12456         80 RK--LKNF---KTLQLDPN-----Y-------EIRDLC-FDQSGTYMAVAGT--------DVRVFLCK-QWQELA---MF  129 (162)
Q Consensus        80 ~~--~~~~---~~~~~~~~-----~-------~v~~~~-~~~~~~~~~~~~~--------~~~i~~~~-~~~~~~---~~  129 (162)
                      ..  .+..   ......+.     .       .+..++ |+|+|+++++++.        .+.+|... ..+...   ..
T Consensus       223 ~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~  302 (365)
T 1jof_A          223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             eCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee
Confidence            53  2221   11211111     1       377899 9999998877642        36778775 333222   23


Q ss_pred             ecCcccEEEEEECC---CCceEEEeecC-CeEEEeeC
Q psy12456        130 NEHTAMVTGVRFGT---HAHYLASSSMD-RTLKLYSL  162 (162)
Q Consensus       130 ~~h~~~v~~~~~s~---~~~~l~s~s~D-~~i~iw~~  162 (162)
                      ..+...+..++|+|   ++++++.++.+ +.|++|++
T Consensus       303 ~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            34555567789999   89999888764 89999974

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.66  E-value=1.6e-15  Score=116.65  Aligned_cols=145  Identities=10%  Similarity=-0.030  Sum_probs=106.3

Q ss_pred             EEEEEeCCCCc--EEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC----CeEEEEEcccCcc
Q psy12456         11 LTTAQLHPDGL--IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE----NCVKLWDLRKLKN   84 (162)
Q Consensus        11 v~~~~~~~~g~--~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----~~v~~wd~~~~~~   84 (162)
                      +...+|+|+|+  +++++..+ .+.+||+++++.......+.   .+++|+|||+++++++.+    ..|.+||+.+.+.
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~  187 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  187 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred             ceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence            44567788775  45555544 45699999887655444332   688999999999988877    7899999876554


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecccE--EEEEe--CCceEEEEeecCcccEEEEE--------ECCCCceEEEee
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDV--RVFLC--KQWQELAMFNEHTAMVTGVR--------FGTHAHYLASSS  152 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~i~~~--~~~~~~~~~~~h~~~v~~~~--------~s~~~~~l~s~s  152 (162)
                      . .+.. +...+..++|+|+|++++++..+.  .|+.+  ...+.. .+..|...+..+.        |+|+++++++++
T Consensus       188 ~-~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~  264 (582)
T 3o4h_A          188 R-VFDS-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVAR  264 (582)
T ss_dssp             E-EECC-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEE
T ss_pred             e-Eeec-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEE
Confidence            3 3332 344578999999999999665543  55544  444444 6677777777777        999998889999


Q ss_pred             cCCeEEEeeC
Q psy12456        153 MDRTLKLYSL  162 (162)
Q Consensus       153 ~D~~i~iw~~  162 (162)
                      .|+++++|++
T Consensus       265 ~~g~~~l~~~  274 (582)
T 3o4h_A          265 REGRSAVFID  274 (582)
T ss_dssp             ETTEEEEEET
T ss_pred             cCCcEEEEEE
Confidence            9999999985

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.65  E-value=1.5e-14  Score=105.49  Aligned_cols=151  Identities=13%  Similarity=0.072  Sum_probs=106.3

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECC-CCeeeeecc--CCCCCEEEEEEccCCCE--EEEEe-------------C
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLK-KQKNVTDFQ--LDAGPIQALSFSENGYY--LATAA-------------D   70 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~-~~~~~~~~~--~~~~~v~~i~~~~~~~~--l~s~~-------------~   70 (162)
                      ..++.++++|+|+++++++.+ .|.+||+. +++......  .+. ....++|+|++++  +++++             .
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC-CCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            467789999999999888887 99999997 676544322  222 2445899999994  55553             6


Q ss_pred             CCeEEEEEccc-CcceeEEee---CCCCCeeEEEECCCCCEEEEecc---cEEEEEeC-CceE--EEEee--cCcccEEE
Q psy12456         71 ENCVKLWDLRK-LKNFKTLQL---DPNYEIRDLCFDQSGTYMAVAGT---DVRVFLCK-QWQE--LAMFN--EHTAMVTG  138 (162)
Q Consensus        71 d~~v~~wd~~~-~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~---~~~i~~~~-~~~~--~~~~~--~h~~~v~~  138 (162)
                      ++++.+|++.. .+.......   .....+..++|+|+|+++++++.   .+.+|+.. ..+.  +..+.  .|...+.+
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            89999999963 333222221   23345889999999998877643   37788776 4432  33333  24567899


Q ss_pred             EEECCCCceEEEeec-CCeEEEee
Q psy12456        139 VRFGTHAHYLASSSM-DRTLKLYS  161 (162)
Q Consensus       139 ~~~s~~~~~l~s~s~-D~~i~iw~  161 (162)
                      ++|+|++++++.++. ++.|.+|+
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~  221 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEECCCCCEEEEEECCCCeEEEEE
Confidence            999999998877664 78999986

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.64  E-value=3.6e-15  Score=114.70  Aligned_cols=148  Identities=11%  Similarity=-0.002  Sum_probs=102.6

Q ss_pred             CcEEEEEeCCCCcEEEEeeC-CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC---CCeEEEEEccc--C
Q psy12456          9 PTLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD---ENCVKLWDLRK--L   82 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---d~~v~~wd~~~--~   82 (162)
                      .+|.+++++|||+.+|+++. ||+++||++++++..+....+...+..++|+|| +.+++++.   +...++|.+..  .
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~  100 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP  100 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence            46899999999999999887 999999999766654433333357999999999 77777765   45567766643  2


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCC--EEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecC----C
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGT--YMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD----R  155 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D----~  155 (162)
                      .....  ..........+|+|+++  ++++++.+ ..+|+....+.......+.   ..++|||||+++++++.|    +
T Consensus       101 g~~~~--l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A          101 GEEQR--LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             TCCEE--CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEE
T ss_pred             Ccccc--ccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCe
Confidence            22122  22222344567777764  45555544 5688776665444333333   788999999999988877    7


Q ss_pred             eEEEeeC
Q psy12456        156 TLKLYSL  162 (162)
Q Consensus       156 ~i~iw~~  162 (162)
                      .|++||+
T Consensus       176 ~i~~~d~  182 (582)
T 3o4h_A          176 SLFTSNL  182 (582)
T ss_dssp             EEEEEET
T ss_pred             EEEEEcC
Confidence            8999884

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.64  E-value=3.3e-13  Score=97.89  Aligned_cols=154  Identities=12%  Similarity=0.250  Sum_probs=101.4

Q ss_pred             CCCcEEEEEeCCCCcEEEEee-CCCcEEEEECCCCeeeeec------cC--------CCCCEEEEEEccCCCEEEEEe-C
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGT-SDSQVQIWDLKKQKNVTDF------QL--------DAGPIQALSFSENGYYLATAA-D   70 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~-~dg~i~~wd~~~~~~~~~~------~~--------~~~~v~~i~~~~~~~~l~s~~-~   70 (162)
                      ++.....+++  +|++++++. .++.+.+|+++....+..+      .+        +...+.+++|+|++++++.++ .
T Consensus        98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  175 (361)
T 3scy_A           98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG  175 (361)
T ss_dssp             SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence            3445566666  677665555 6889999999754333211      11        122357899999999766655 5


Q ss_pred             CCeEEEEEcccCcc------e------eEEeeCCCCCeeEEEECCCCCEEEEecc-c--EEEEEeCCce--EEEEe---e
Q psy12456         71 ENCVKLWDLRKLKN------F------KTLQLDPNYEIRDLCFDQSGTYMAVAGT-D--VRVFLCKQWQ--ELAMF---N  130 (162)
Q Consensus        71 d~~v~~wd~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~i~~~~~~~--~~~~~---~  130 (162)
                      ++.+.+|++.....      +      ...........+.++|+|+++++++++. +  +.+|+....+  .+..+   .
T Consensus       176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~  255 (361)
T 3scy_A          176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADT  255 (361)
T ss_dssp             TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCS
T ss_pred             CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCC
Confidence            78999999874332      1      2223333445789999999998777653 3  6777765442  23332   2


Q ss_pred             cCcccEEEEEECCCCceEEEeec--CCeEEEeeC
Q psy12456        131 EHTAMVTGVRFGTHAHYLASSSM--DRTLKLYSL  162 (162)
Q Consensus       131 ~h~~~v~~~~~s~~~~~l~s~s~--D~~i~iw~~  162 (162)
                      .+......++|+|++++|+.+..  ++.|.+|++
T Consensus       256 ~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          256 VNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             SCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             CCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence            34455789999999998865554  589999974

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.61  E-value=5.6e-15  Score=116.82  Aligned_cols=147  Identities=11%  Similarity=0.165  Sum_probs=103.2

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCC-----EEEEEEccCCCEEEEEeCC---------CeEE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP-----IQALSFSENGYYLATAADE---------NCVK   75 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~-----v~~i~~~~~~~~l~s~~~d---------~~v~   75 (162)
                      ....+.|+|||++++++  ||+|++||+.+++....+..|...     ...++|||||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35578999999999986  899999999999887777766422     2347899999999999886         4566


Q ss_pred             EEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEE-EeecCcccE-----------------
Q psy12456         76 LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELA-MFNEHTAMV-----------------  136 (162)
Q Consensus        76 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~-~~~~h~~~v-----------------  136 (162)
                      +||+.+.+... +.. +...+...+|||+|+.|+.+... +.+++....+..+ ...++...+                 
T Consensus        96 ~~d~~~~~~~~-l~~-~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           96 IYDLNKRQLIT-EER-IPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEETTTTEECC-SSC-CCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEECCCCcEEE-ccc-CCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            99998765332 222 23458899999999999888543 5555444443322 122332222                 


Q ss_pred             EEEEECCCCceEEEeecCCe-EEEe
Q psy12456        137 TGVRFGTHAHYLASSSMDRT-LKLY  160 (162)
Q Consensus       137 ~~~~~s~~~~~l~s~s~D~~-i~iw  160 (162)
                      ..+.|||||++||.++.|.+ +++|
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~  198 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLI  198 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             cceEECCCCCEEEEEEEcccCCceE
Confidence            34889999999998875543 4444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.61  E-value=5.4e-13  Score=93.83  Aligned_cols=151  Identities=11%  Similarity=0.160  Sum_probs=110.4

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc--CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ--LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      ..+..++++|+|+++++...++.|.+||.+ ++.+..+.  .+...+..++++|+++++++...++.|.+||... +.+.
T Consensus       121 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~  198 (286)
T 1q7f_A          121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLR  198 (286)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEE
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEE
Confidence            467899999999999888888999999964 55555554  3445689999999999888888889999999743 3333


Q ss_pred             EEeeCC-CCCeeEEEECCCCCEEEEecccE-EEEEeC-CceEEEEeecCc--ccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         87 TLQLDP-NYEIRDLCFDQSGTYMAVAGTDV-RVFLCK-QWQELAMFNEHT--AMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~-~i~~~~-~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .+.... ...+..++++++|.++++...+. +|..+. ..+.+..+..+.  ..+.+++++|+++++++ +.|+.|++|+
T Consensus       199 ~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          199 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred             EEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence            333221 13578999999998888775542 443333 344555555443  34789999999998887 5799999998


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       278 ~  278 (286)
T 1q7f_A          278 Y  278 (286)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.60  E-value=3.3e-14  Score=110.72  Aligned_cols=153  Identities=10%  Similarity=0.006  Sum_probs=109.7

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCC----------CcEEEEECCC------Ceeeeecc-CCCCCEEEEEEccCCCEEEEEe
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSD----------SQVQIWDLKK------QKNVTDFQ-LDAGPIQALSFSENGYYLATAA   69 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~d----------g~i~~wd~~~------~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~   69 (162)
                      +...+..++|+|||+.|++++.+          ..|.+||+.+      ++. ..+. .+...+..++|+|||++|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEE
Confidence            45578899999999999998877          5899999987      444 3444 4556777889999999999887


Q ss_pred             CC--------CeEEEEEcc-cCc--ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeC--CceEEEEeecCcc
Q psy12456         70 DE--------NCVKLWDLR-KLK--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCK--QWQELAMFNEHTA  134 (162)
Q Consensus        70 ~d--------~~v~~wd~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~--~~~~~~~~~~h~~  134 (162)
                      .+        ..|.+||+. +.+  ....+...+...+..+.|+|+|+++++++.+  .++|.++  ..+.......+..
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~  286 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE  286 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc
Confidence            55        379999997 441  2233333334568899999999977777655  3777664  3333222233322


Q ss_pred             c--------EEEEEECCCCceEEEeecCCeEEEee
Q psy12456        135 M--------VTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       135 ~--------v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .        +..++|+|+++++++++. +.+++|.
T Consensus       287 ~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  320 (662)
T 3azo_A          287 FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI  320 (662)
T ss_dssp             SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred             ccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence            2        567889999999999988 9999983

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.60  E-value=1.1e-12  Score=94.13  Aligned_cols=155  Identities=13%  Similarity=0.177  Sum_probs=110.7

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC----CeEEEEEcccCc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE----NCVKLWDLRKLK   83 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----~~v~~wd~~~~~   83 (162)
                      ...+..++|+|+|++++++..++.|.+||.++++.......+...+.+++++|+++++++...+    +.|.+||..+.+
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~  123 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  123 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE
Confidence            3456889999999999889999999999998877655443455679999999999988877766    689999987654


Q ss_pred             ceeEEe-eCCCCCeeEEEECCCCCEEEEecc------cEEEEEeCCc-eEEEEeecCcccEEEEEECCCCceE-EEeecC
Q psy12456         84 NFKTLQ-LDPNYEIRDLCFDQSGTYMAVAGT------DVRVFLCKQW-QELAMFNEHTAMVTGVRFGTHAHYL-ASSSMD  154 (162)
Q Consensus        84 ~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~------~~~i~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D  154 (162)
                      ...... ......+.+++++|++.+.++...      ...++.+... ..+..+..+...+..++|+|+++.+ ++.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~  203 (333)
T 2dg1_A          124 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA  203 (333)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCC
Confidence            322221 112345889999999988777653      3566666432 2233333334457889999999854 555667


Q ss_pred             CeEEEeeC
Q psy12456        155 RTLKLYSL  162 (162)
Q Consensus       155 ~~i~iw~~  162 (162)
                      +.|.+|++
T Consensus       204 ~~i~~~d~  211 (333)
T 2dg1_A          204 NRLHRIAL  211 (333)
T ss_dssp             TEEEEEEE
T ss_pred             CeEEEEEe
Confidence            88988873

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=2.8e-13  Score=95.89  Aligned_cols=154  Identities=12%  Similarity=0.042  Sum_probs=115.1

Q ss_pred             CCCcEEEEEeCCCCc-EEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          7 GGPTLTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      +......++|+|+|+ +++++..++.|..||.+++  ...+..+...+.+++++|+++++++...++.|.+||..+.+..
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~  103 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE  103 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence            344567899999998 8888999999999999876  5666667778999999999998888777889999998655432


Q ss_pred             eEEeeC---CCCCeeEEEECCCCCEEEE----ec-------------ccEEEEEeCCceEEEEeecCcccEEEEEECCCC
Q psy12456         86 KTLQLD---PNYEIRDLCFDQSGTYMAV----AG-------------TDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHA  145 (162)
Q Consensus        86 ~~~~~~---~~~~v~~~~~~~~~~~~~~----~~-------------~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~  145 (162)
                      ......   ....+.+++++|+|.+.++    +.             ....||.+.....+..+..+......++|+|++
T Consensus       104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg  183 (296)
T 3e5z_A          104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSG  183 (296)
T ss_dssp             EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTS
T ss_pred             EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCC
Confidence            221111   1123567999999998886    32             124677665433444556666778999999999


Q ss_pred             ceEEEeecCCeEEEeeC
Q psy12456        146 HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       146 ~~l~s~s~D~~i~iw~~  162 (162)
                      +.+++.+.++.|.+|++
T Consensus       184 ~~lv~~~~~~~i~~~~~  200 (296)
T 3e5z_A          184 NLLVSDTGDNATHRYCL  200 (296)
T ss_dssp             CEEEEETTTTEEEEEEE
T ss_pred             CEEEEeCCCCeEEEEEE
Confidence            98887888899999873

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.57  E-value=1.2e-13  Score=109.31  Aligned_cols=149  Identities=15%  Similarity=0.125  Sum_probs=102.8

Q ss_pred             EEEEeCCCCcEEEEeeCC---------CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456         12 TTAQLHPDGLIFGIGTSD---------SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      ...+|||||++++.++.+         +.+.+||+.+++.. .+..+.+.+...+|||||++|+.+. |+.|.+||+.+.
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~  142 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNL  142 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTS
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCC
Confidence            347899999999999886         55679999988754 4666677899999999999999885 678999998765


Q ss_pred             cceeEEe-eCCC----------------CCeeEEEECCCCCEEEEeccc-------------------------------
Q psy12456         83 KNFKTLQ-LDPN----------------YEIRDLCFDQSGTYMAVAGTD-------------------------------  114 (162)
Q Consensus        83 ~~~~~~~-~~~~----------------~~v~~~~~~~~~~~~~~~~~~-------------------------------  114 (162)
                      +..+... .+..                .....+.|||+|++|+..+.|                               
T Consensus       143 ~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          143 PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             ceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            4322111 1111                112358899999999987532                               


Q ss_pred             -------EEEEEeCC---ce--EEEEee------cCcccEEEEEECCCCceEEEee----cCCeEEEeeC
Q psy12456        115 -------VRVFLCKQ---WQ--ELAMFN------EHTAMVTGVRFGTHAHYLASSS----MDRTLKLYSL  162 (162)
Q Consensus       115 -------~~i~~~~~---~~--~~~~~~------~h~~~v~~~~~s~~~~~l~s~s----~D~~i~iw~~  162 (162)
                             +.+|+...   .+  ....+.      +|...+..++||||++.++...    .+..|.+||+
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~  292 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY  292 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEEC
Confidence                   23334333   31  122232      3777899999999999766543    2346888873

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.56  E-value=3.6e-12  Score=91.76  Aligned_cols=157  Identities=11%  Similarity=0.105  Sum_probs=114.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCC------------------------CcEEEEECCCCeeeeecc-CCCCCEEEEEEcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSD------------------------SQVQIWDLKKQKNVTDFQ-LDAGPIQALSFSE   60 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~d------------------------g~i~~wd~~~~~~~~~~~-~~~~~v~~i~~~~   60 (162)
                      ..-..+..++++|+|+++++...+                        +.|.+||..+++.+..+. .+......++++|
T Consensus        21 ~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           21 LLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred             eecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence            344568999999999999988887                        479999998888876665 3445788999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcccCc-ceeEEe--------eCCCCCeeEEEECC-CCCEEEEec-ccEEEEEeC-CceEEEE
Q psy12456         61 NGYYLATAADENCVKLWDLRKLK-NFKTLQ--------LDPNYEIRDLCFDQ-SGTYMAVAG-TDVRVFLCK-QWQELAM  128 (162)
Q Consensus        61 ~~~~l~s~~~d~~v~~wd~~~~~-~~~~~~--------~~~~~~v~~~~~~~-~~~~~~~~~-~~~~i~~~~-~~~~~~~  128 (162)
                      +++++++...++.|..||..... .+..+.        ..+......++++| ++.++++.+ .+.+|..+. ....+..
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~  180 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQ  180 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEE
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEE
Confidence            99999888889999999985432 233321        11223478999999 788877775 454444433 3344444


Q ss_pred             eec----------CcccEEEEEECCC-CceEEEeecCCeEEEeeC
Q psy12456        129 FNE----------HTAMVTGVRFGTH-AHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       129 ~~~----------h~~~v~~~~~s~~-~~~l~s~s~D~~i~iw~~  162 (162)
                      +..          +-....+++++|+ ++++++...++.|++|+.
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~  225 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKT  225 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEEC
Confidence            431          2234889999998 888888888999999984

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.55  E-value=4e-12  Score=89.34  Aligned_cols=152  Identities=14%  Similarity=0.195  Sum_probs=109.7

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC------CCCCEEEEEE-ccCCCEEEEEeC-CCeEEEEEcc
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL------DAGPIQALSF-SENGYYLATAAD-ENCVKLWDLR   80 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~------~~~~v~~i~~-~~~~~~l~s~~~-d~~v~~wd~~   80 (162)
                      ..+..++++|+|+++++...++.|.+||.+ ++.+..+..      +...+..+++ .++++++++... ++.|.+||. 
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-  107 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  107 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-
Confidence            467899999999999998889999999987 556655542      3346889999 567776666543 789999994 


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeC-CceEEEEee--cCcccEEEEEECCCCceEEEeecCCeE
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK-QWQELAMFN--EHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      +.+.+..+.......+..++++|++.++++...+.+|+.+. ..+.+..+.  .+...+.+++++|+++++++.+.++.|
T Consensus       108 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i  187 (286)
T 1q7f_A          108 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV  187 (286)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred             CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEE
Confidence            44444444333334578999999998877765554444333 234444443  455578999999999988888889999


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      ++|+.
T Consensus       188 ~~~~~  192 (286)
T 1q7f_A          188 KVFNY  192 (286)
T ss_dssp             EEEET
T ss_pred             EEEcC
Confidence            99973

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.54  E-value=8e-13  Score=96.42  Aligned_cols=146  Identities=12%  Similarity=-0.016  Sum_probs=103.4

Q ss_pred             EEeCCCCcEEEEeeC-CCc--EEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEee
Q psy12456         14 AQLHPDGLIFGIGTS-DSQ--VQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      .+|+|||++|+.++. +|.  |.+||+.+++.......+...+...+|+||+++|+.++.++.+.+||+.+.+.......
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~  120 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV  120 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec
Confidence            679999999998887 674  88889988887776666655555678999999999999999999999987665444443


Q ss_pred             CCCCCeeEE--EECCCCCEEEEec----------------------cc--EEEEEeCCceEEEEeecCcccEEEEEECC-
Q psy12456         91 DPNYEIRDL--CFDQSGTYMAVAG----------------------TD--VRVFLCKQWQELAMFNEHTAMVTGVRFGT-  143 (162)
Q Consensus        91 ~~~~~v~~~--~~~~~~~~~~~~~----------------------~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~-  143 (162)
                      +. ..+...  .++|++.+++...                      .+  +.+++..+.+ ...+..+...+..+.|+| 
T Consensus       121 ~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~  198 (388)
T 3pe7_A          121 PA-EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPY  198 (388)
T ss_dssp             CT-TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETT
T ss_pred             hh-hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCC
Confidence            32 223223  3489999887421                      22  3444444443 344455667789999999 


Q ss_pred             CCceEEEeecC------CeEEEee
Q psy12456        144 HAHYLASSSMD------RTLKLYS  161 (162)
Q Consensus       144 ~~~~l~s~s~D------~~i~iw~  161 (162)
                      +++.++..+.+      ..|.+++
T Consensus       199 dg~~l~~~~~~~~~~~~~~l~~~d  222 (388)
T 3pe7_A          199 DDSTVAFCHEGPHDLVDARMWLIN  222 (388)
T ss_dssp             EEEEEEEEECSCTTTSSCSEEEEE
T ss_pred             CCCEEEEEEecCCCCCcceEEEEe
Confidence            99988776653      2566655

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.53  E-value=7.1e-13  Score=97.54  Aligned_cols=132  Identities=14%  Similarity=0.094  Sum_probs=100.0

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEee
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      |+.++|  |+++|+++ .++.|++||+++.........+..++..+.+.+.  .++++..||.+.+||+.+.+... .  
T Consensus        90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~--  161 (388)
T 1xip_A           90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L--  161 (388)
T ss_dssp             EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E--
T ss_pred             eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c--
Confidence            999999  99999999 8899999999876655556666677888776654  38889999999999998655432 1  


Q ss_pred             CCCCCeeEEEECCCCCEEEEecccEEEEEeCCceE--EEEe------e---cCcccEEEEEECCCCceEEEee
Q psy12456         91 DPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQE--LAMF------N---EHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~------~---~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                        ...|+++||+|+|..+..+...+++|.....+.  .+.+      .   +|...|.++.|.++++++++-+
T Consensus       162 --~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          162 --AQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             --EESEEEEEECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             --cCCceEEEEcCCceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence              235999999999944444444478876655443  3344      3   3788999999999999998743

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.52  E-value=6.7e-13  Score=103.33  Aligned_cols=143  Identities=7%  Similarity=0.005  Sum_probs=98.4

Q ss_pred             CCCCcE-EEEeeC-CCcEEEEECC--CCeeeeeccC-----CCCCEEEEEEccCCCEEEEEeCC----------CeEEEE
Q psy12456         17 HPDGLI-FGIGTS-DSQVQIWDLK--KQKNVTDFQL-----DAGPIQALSFSENGYYLATAADE----------NCVKLW   77 (162)
Q Consensus        17 ~~~g~~-~a~g~~-dg~i~~wd~~--~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~s~~~d----------~~v~~w   77 (162)
                      ||||+. ++.+.. +..|.++++.  .......+..     |...+..++|+|||++|+.++.+          ..|.+|
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence            499998 776654 5667777765  2033344544     55678899999999999999877          589999


Q ss_pred             Eccc------CcceeEEeeCCCCCeeEEEECCCCCEEEEecc----------cEEEEEeC-Cc---eEEEEeecCcccEE
Q psy12456         78 DLRK------LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT----------DVRVFLCK-QW---QELAMFNEHTAMVT  137 (162)
Q Consensus        78 d~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~i~~~~-~~---~~~~~~~~h~~~v~  137 (162)
                      |+..      .+. ..+.......+..++|+|+|++|+.++.          ++.+++.. ..   +......+|...+.
T Consensus       167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~  245 (662)
T 3azo_A          167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA  245 (662)
T ss_dssp             ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred             ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence            9976      332 2222022335778899999999987662          35556665 34   33334455678899


Q ss_pred             EEEECCCCceEEEeecCCeEEEe
Q psy12456        138 GVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus       138 ~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      .+.|+||+++++++..|+..++|
T Consensus       246 ~~~~spdg~l~~~~~~~~~~~l~  268 (662)
T 3azo_A          246 QAEWAPDGSLIVATDRTGWWNLH  268 (662)
T ss_dssp             EEEECTTSCEEEEECTTSSCEEE
T ss_pred             ceEECCCCeEEEEECCCCCeEEE
Confidence            99999999988888888844444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.51  E-value=1.6e-12  Score=94.91  Aligned_cols=147  Identities=14%  Similarity=0.165  Sum_probs=105.9

Q ss_pred             EEEeCCCCcEEEEee----------CCCcEEEEECCCCeeeeeccCC------CCCEEEEEEccCCCEEEEEeC--CCeE
Q psy12456         13 TAQLHPDGLIFGIGT----------SDSQVQIWDLKKQKNVTDFQLD------AGPIQALSFSENGYYLATAAD--ENCV   74 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~----------~dg~i~~wd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~s~~~--d~~v   74 (162)
                      .++++|||++++++.          .++.|.+||..+.+.+.++...      ......++++||+++|++++.  +++|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            789999999988876          3678999999998888777532      233557899999999998874  5789


Q ss_pred             EEEEcccCcceeE-Ee------------------------------eCCCCC----------------------------
Q psy12456         75 KLWDLRKLKNFKT-LQ------------------------------LDPNYE----------------------------   95 (162)
Q Consensus        75 ~~wd~~~~~~~~~-~~------------------------------~~~~~~----------------------------   95 (162)
                      .+||+.+.+.+.. ..                              ......                            
T Consensus       134 ~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  213 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDK  213 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSE
T ss_pred             EEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCE
Confidence            9999865443222 00                              000000                            


Q ss_pred             ------------------------------------------eeEEEECCCCCEEEEecc-------------cEEEEEe
Q psy12456         96 ------------------------------------------IRDLCFDQSGTYMAVAGT-------------DVRVFLC  120 (162)
Q Consensus        96 ------------------------------------------v~~~~~~~~~~~~~~~~~-------------~~~i~~~  120 (162)
                                                                ...++|+|++..+.++..             .+.+++.
T Consensus       214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~  293 (361)
T 2oiz_A          214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT  293 (361)
T ss_dssp             EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred             EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence                                                      001567777666555422             3667777


Q ss_pred             CCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        121 KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       121 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .+.+.+..+..+.  +.+++|+|+++++.+++. ++|.+||.
T Consensus       294 ~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          294 KTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             TTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             CCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            7888888888777  899999999999988776 99999984

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.51  E-value=2.5e-12  Score=92.57  Aligned_cols=151  Identities=13%  Similarity=0.178  Sum_probs=113.1

Q ss_pred             cEEEEEeCC-CCcEEEEee-CCCcEEEEECCCCeeeeeccCC----------CCCEEEEEEccC-CCEEEEEeCCCeEEE
Q psy12456         10 TLTTAQLHP-DGLIFGIGT-SDSQVQIWDLKKQKNVTDFQLD----------AGPIQALSFSEN-GYYLATAADENCVKL   76 (162)
Q Consensus        10 ~v~~~~~~~-~g~~~a~g~-~dg~i~~wd~~~~~~~~~~~~~----------~~~v~~i~~~~~-~~~l~s~~~d~~v~~   76 (162)
                      ..+.++++| +|.++++.+ .++.|++|| ..++.+..+...          ......|+++|+ +.++++...++.|++
T Consensus       144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~  222 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC  222 (329)
T ss_dssp             SEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence            578999999 899998886 699999999 456666666422          133789999998 777777788899999


Q ss_pred             EEcccCcceeEEeeC-CCCCeeEEEECCCCCEEEEecc---------cEEEEEeCCceEEEEe---ecCcccEEEEEECC
Q psy12456         77 WDLRKLKNFKTLQLD-PNYEIRDLCFDQSGTYMAVAGT---------DVRVFLCKQWQELAMF---NEHTAMVTGVRFGT  143 (162)
Q Consensus        77 wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~---~~h~~~v~~~~~s~  143 (162)
                      ||..+.+.+..+... ....+..++++| +..+...+.         .+.+++....+.+..+   ..+...+.+++++|
T Consensus       223 ~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~  301 (329)
T 3fvz_A          223 FKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE  301 (329)
T ss_dssp             EETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred             EECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence            999866655555322 223577889999 544444321         2556666666667666   36777899999999


Q ss_pred             CCceEEEeecCCeEEEeeC
Q psy12456        144 HAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       144 ~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++.++++...++.|+.|++
T Consensus       302 dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          302 DGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             TSEEEEEESSSCCEEEEEE
T ss_pred             CCCEEEEECCCCEEEEEeC
Confidence            9999999999999999974

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.50  E-value=4.3e-12  Score=89.54  Aligned_cols=141  Identities=9%  Similarity=0.082  Sum_probs=108.1

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCeeeeeccCCC-CCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCee
Q psy12456         19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIR   97 (162)
Q Consensus        19 ~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~   97 (162)
                      .++++++++.|+.|.+||.++++.+.++..+. ..+.++++.|+|++++  +.++.|..||. +.+.+-.+.......+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            35789999999999999998999999998765 4678899999999888  44678999998 66666666553334678


Q ss_pred             EEEECCCCCEEEEecc-cEEEEEeC-CceEEEEee------cCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         98 DLCFDQSGTYMAVAGT-DVRVFLCK-QWQELAMFN------EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~-~~~i~~~~-~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++.+.++|.++++.+. +.+++.++ ..+.+.++.      .+......+++.++++++++...++.|..||.
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~  153 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP  153 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC
Confidence            8899999999998876 66776653 344444432      22234455678899999999999999999873

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.49  E-value=2.3e-12  Score=92.76  Aligned_cols=135  Identities=10%  Similarity=0.148  Sum_probs=93.3

Q ss_pred             cEEEEEeCCCCcEEEEeeCC---C--cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC-------------
Q psy12456         10 TLTTAQLHPDGLIFGIGTSD---S--QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE-------------   71 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~d---g--~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-------------   71 (162)
                      .+...+|+|||+.+|..+.+   +  .|.+||+.+++.......+ . +..++|+||++.|+.++.+             
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            35678999999999887754   3  3778888887765544433 3 8999999999999888642             


Q ss_pred             --------------CeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc---------cEEEEEeCCceEEEE
Q psy12456         72 --------------NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT---------DVRVFLCKQWQELAM  128 (162)
Q Consensus        72 --------------~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~  128 (162)
                                    ..|.+||+.+.+....+.. .  .+..+.|+|+| +++++..         ...+|.+... ....
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~  212 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEK  212 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-ceEE
Confidence                          4688899876554233333 2  57889999999 7666642         3466666533 3333


Q ss_pred             eecCcccEEEEEECCCCceEEEeecC
Q psy12456        129 FNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus       129 ~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      +..+ ..+..+  +|++++++.++.+
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~  235 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKP  235 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECC
T ss_pred             eccC-cceeeE--CCCCCEEEEEEcc
Confidence            4434 455544  9999998877654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.47  E-value=2.6e-12  Score=101.21  Aligned_cols=151  Identities=11%  Similarity=0.061  Sum_probs=103.1

Q ss_pred             cEEEEEeCCCCcEEEEeeCCC-----cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCe-----------
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDS-----QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC-----------   73 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg-----~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~-----------   73 (162)
                      .+...+|+|||+++|.+..++     +|++||+.+++.+.....+ ..+..++|+||++.|+.++.++.           
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~  204 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence            578999999999999877644     8999999998876532222 23567899999999999988765           


Q ss_pred             -----EEEEEcccCcceeEE--eeC-CCCCeeEEEECCCCCEEEEecc-----c--EEEEEeCC------ce-EEEEeec
Q psy12456         74 -----VKLWDLRKLKNFKTL--QLD-PNYEIRDLCFDQSGTYMAVAGT-----D--VRVFLCKQ------WQ-ELAMFNE  131 (162)
Q Consensus        74 -----v~~wd~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~~~~~~~-----~--~~i~~~~~------~~-~~~~~~~  131 (162)
                           |.+|++.+.+.....  ... +...+..+.|+|+|++++..+.     +  +.+++...      .. ....+..
T Consensus       205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~  284 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (710)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence                 999999765532122  221 1223678999999999888653     3  44444443      21 3455566


Q ss_pred             CcccEEEEEECCCCceEEEeecC----CeEEEeeC
Q psy12456        132 HTAMVTGVRFGTHAHYLASSSMD----RTLKLYSL  162 (162)
Q Consensus       132 h~~~v~~~~~s~~~~~l~s~s~D----~~i~iw~~  162 (162)
                      +...+.. .|+|+++.|+..+.+    +.|.+|++
T Consensus       285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~  318 (710)
T 2xdw_A          285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF  318 (710)
T ss_dssp             SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred             CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence            6665554 478888877655543    35777764

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.46  E-value=3.7e-12  Score=100.09  Aligned_cols=152  Identities=9%  Similarity=0.043  Sum_probs=102.0

Q ss_pred             CcEEEEEeCCCCcEEE-----EeeCCCcEEEEECCCCeee-eeccCCCCCEEEEEEccCCCEEEEEeCCCe---------
Q psy12456          9 PTLTTAQLHPDGLIFG-----IGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAADENC---------   73 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a-----~g~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~---------   73 (162)
                      ..+..++|||||+++|     .|+.+.+|++||+.+++.+ .. .........++|+||++.|+.++.|..         
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~  199 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERP  199 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence            4688999999999999     5555678999999998865 21 111111257899999999999998776         


Q ss_pred             ----EEEEEcccCcce--eEEeeC-CCCCeeEEEECCCCCEEEEeccc----EEEEEeCCc-eEEEEeecCcccEEEEEE
Q psy12456         74 ----VKLWDLRKLKNF--KTLQLD-PNYEIRDLCFDQSGTYMAVAGTD----VRVFLCKQW-QELAMFNEHTAMVTGVRF  141 (162)
Q Consensus        74 ----v~~wd~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~----~~i~~~~~~-~~~~~~~~h~~~v~~~~~  141 (162)
                          |++|++.+.+..  ..+... +...+..+.|+|+|++++..+.+    ..+|.++.. .....+..+...+....+
T Consensus       200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~  279 (695)
T 2bkl_A          200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA  279 (695)
T ss_dssp             GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE
T ss_pred             CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe
Confidence                999999865532  222211 22357789999999988876643    367766431 233444455555566666


Q ss_pred             CCCCceEEEeec---CCeEEEeeC
Q psy12456        142 GTHAHYLASSSM---DRTLKLYSL  162 (162)
Q Consensus       142 s~~~~~l~s~s~---D~~i~iw~~  162 (162)
                       +++++++.+..   ++.|.+|++
T Consensus       280 -~~g~l~~~s~~~~~~~~l~~~d~  302 (695)
T 2bkl_A          280 -WKDRFYVLTDEGAPRQRVFEVDP  302 (695)
T ss_dssp             -ETTEEEEEECTTCTTCEEEEEBT
T ss_pred             -cCCcEEEEECCCCCCCEEEEEeC
Confidence             55665555442   578888874

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.44  E-value=1.4e-11  Score=89.83  Aligned_cols=148  Identities=14%  Similarity=0.033  Sum_probs=102.0

Q ss_pred             EEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEE--EccCCCEEEEE----------------------
Q psy12456         13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALS--FSENGYYLATA----------------------   68 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~--~~~~~~~l~s~----------------------   68 (162)
                      ...|+|||+.|+.+..++.+.+||+.+++....+..+...+....  ++|++.+++..                      
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            457999999999999999999999999887766666655554444  48999988742                      


Q ss_pred             eCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECC-CCCEEEEecc------cEEEEEeCC-ceEEEEeecCc--ccEEE
Q psy12456         69 ADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQ-SGTYMAVAGT------DVRVFLCKQ-WQELAMFNEHT--AMVTG  138 (162)
Q Consensus        69 ~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~------~~~i~~~~~-~~~~~~~~~h~--~~v~~  138 (162)
                      +.+..|.+||+.+.+......  ....+..+.|+| +++.++....      ..++|.+.. ......+..+.  ..+..
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  242 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVILQ--ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH  242 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred             CCcceEEEEECCCCceEEeec--CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence            234678999998765433222  233578899999 9998877653      235555432 22333444444  35788


Q ss_pred             EEECCCCceEEEeecC-C----eEEEeeC
Q psy12456        139 VRFGTHAHYLASSSMD-R----TLKLYSL  162 (162)
Q Consensus       139 ~~~s~~~~~l~s~s~D-~----~i~iw~~  162 (162)
                      ..|+|+++.|+..+.+ +    .|.+||+
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (388)
T 3pe7_A          243 EFWVPDGSALVYVSYLKGSPDRFIYSADP  271 (388)
T ss_dssp             EEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred             ceECCCCCEEEEEecCCCCCcceEEEEec
Confidence            9999999987654432 2    3888874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.42  E-value=4.7e-11  Score=82.97  Aligned_cols=153  Identities=9%  Similarity=0.038  Sum_probs=106.5

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ..+..+++.|+|+++++...++.|.+||..+................++++++++++++...++.|..||........ .
T Consensus       108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-~  186 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-L  186 (270)
T ss_dssp             SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-C
T ss_pred             CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe-e
Confidence            567899999999988888888999999865544332222223356789999999988777778899999986543222 1


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .......+..++++++|.+.++...+  +.+++............+...+.+++++|+++++++...++.|+++++
T Consensus       187 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          187 PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence            11222457899999999777666544  444443322222222233356899999999999999999999999874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.41  E-value=1.1e-11  Score=89.17  Aligned_cols=140  Identities=9%  Similarity=0.127  Sum_probs=96.5

Q ss_pred             EEEEEeCCCCcEEEEeeCC---------------------------CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCC
Q psy12456         11 LTTAQLHPDGLIFGIGTSD---------------------------SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY   63 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~d---------------------------g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~   63 (162)
                      +..++|+|||+.|+.++.+                           ..|.+||+.+++.+..+.. . .+..++|+|++ 
T Consensus       106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-  182 (347)
T 2gop_A          106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-  182 (347)
T ss_dssp             EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred             ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence            7889999999988887642                           5689999988876455544 3 67789999999 


Q ss_pred             EEEEEeCCC-------eEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--------EEEEEeCCceEEEE
Q psy12456         64 YLATAADEN-------CVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--------VRVFLCKQWQELAM  128 (162)
Q Consensus        64 ~l~s~~~d~-------~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~  128 (162)
                      ++++++.+.       ...+|.+.+.+ ...+..+  ..+..  ++|+|++++..+.+        .+++.+...+....
T Consensus       183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~--~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l  257 (347)
T 2gop_A          183 IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK--VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGI  257 (347)
T ss_dssp             EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE--ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEECSSCEEES
T ss_pred             EEEEEecccccccccccccEEEeCCCc-eEEeccC--cceee--ECCCCCEEEEEEccccCCccccceEEEECCCceEec
Confidence            887776542       44555554322 2222222  23443  38999988776532        46666653333333


Q ss_pred             eecCcccEEE-EEECCCCceEEEeecCCeEEEe
Q psy12456        129 FNEHTAMVTG-VRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus       129 ~~~h~~~v~~-~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ...|...+.. +.|+ ++ ++++++.|+.+++|
T Consensus       258 ~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~  288 (347)
T 2gop_A          258 LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY  288 (347)
T ss_dssp             STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE
T ss_pred             cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE
Confidence            4566777886 9999 88 88899999999998

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=1.8e-11  Score=90.13  Aligned_cols=139  Identities=13%  Similarity=0.130  Sum_probs=100.2

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-----------eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEE
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-----------NVTDFQLDAGPIQALSFSENGYYLATAADENCVKL   76 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-----------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~   76 (162)
                      ...++.+++++...++++|+.++ +++|+++.-.           +..... +.. |+.++|  ++.+|+++ .++.|++
T Consensus        37 ~~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           37 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             cccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            34689999999999999999875 6679865322           112222 334 999999  88999998 7899999


Q ss_pred             EEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         77 WDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        77 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      ||+++.........+ ...+.++.+.+..  ++++..+  +.+|+.+..+...    +...|++++|||+|  ++.|..|
T Consensus       111 ~dv~sl~~~~~~~~~-~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          111 LDLEELSEFRTVTSF-EKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             EESSSTTCEEEEEEC-SSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred             EEchhhhccCcccee-ecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence            999876654444333 3457776666543  5555555  6677666554432    45679999999999  6778899


Q ss_pred             CeEEEee
Q psy12456        155 RTLKLYS  161 (162)
Q Consensus       155 ~~i~iw~  161 (162)
                      +++++|+
T Consensus       182 g~i~~~~  188 (388)
T 1xip_A          182 RSFQSFA  188 (388)
T ss_dssp             SCEEEEE
T ss_pred             CcEEEEc
Confidence            9999985

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.36  E-value=4.8e-12  Score=92.23  Aligned_cols=147  Identities=11%  Similarity=0.003  Sum_probs=96.5

Q ss_pred             EEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEE-------------------EEEccCCCEEEEE-----e
Q psy12456         14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQA-------------------LSFSENGYYLATA-----A   69 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~-------------------i~~~~~~~~l~s~-----~   69 (162)
                      +.|+|||++|+.++.++.+.+||+.+++....+..+......                   ++|+|+++.++..     .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  165 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN  165 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence            679999999999999999999999988766555544432222                   3456777766554     3


Q ss_pred             CCCeEEEEEcccCcceeEEeeCCCCCeeEEEECC-CCCEEEEeccc------EEEEEeCC-ceEEEEeecC--cccEEEE
Q psy12456         70 DENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQ-SGTYMAVAGTD------VRVFLCKQ-WQELAMFNEH--TAMVTGV  139 (162)
Q Consensus        70 ~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~------~~i~~~~~-~~~~~~~~~h--~~~v~~~  139 (162)
                      .+..|.+||+.+.+......  ....+..+.|+| ++..++..+.+      .++|.+.. ......+..+  ...+..+
T Consensus       166 ~~~~l~~~d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  243 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE  243 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred             CcceEEEEECCCCcEEeecc--CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence            55689999997755433332  233578899999 78766665421      24444322 1222222223  2358889


Q ss_pred             EECCCCceEEEeecC-----CeEEEeeC
Q psy12456        140 RFGTHAHYLASSSMD-----RTLKLYSL  162 (162)
Q Consensus       140 ~~s~~~~~l~s~s~D-----~~i~iw~~  162 (162)
                      .|+|++++|+.++.+     +.|.+||+
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQTDRVIYKANP  271 (396)
T ss_dssp             EECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred             EECCCCCEEEEEecCCCCccceEEEEEC
Confidence            999999988776554     44898874

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.36  E-value=1.4e-10  Score=81.97  Aligned_cols=144  Identities=18%  Similarity=0.153  Sum_probs=98.6

Q ss_pred             cEEEEEeCCCCcEEEE----eeC-------------CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCC
Q psy12456         10 TLTTAQLHPDGLIFGI----GTS-------------DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADEN   72 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~----g~~-------------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~   72 (162)
                      .++.++++|+|+++++    |+.             .+.|..+|.. ++ ...+..+......++|+|+++.+++.+.++
T Consensus       116 ~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~  193 (296)
T 3e5z_A          116 SPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDN  193 (296)
T ss_dssp             CCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTT
T ss_pred             CCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCC
Confidence            3567899999999987    431             3456566654 33 333444556678999999999887777889


Q ss_pred             eEEEEEcc-cCcc---eeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEeecCcccEEEEEE-CCCCce
Q psy12456         73 CVKLWDLR-KLKN---FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRF-GTHAHY  147 (162)
Q Consensus        73 ~v~~wd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~  147 (162)
                      .|.+||+. +.+.   ...+ ......+..++++++|.+.++....+.+|+.. .+.+..+..+.. +.++.| +|+++.
T Consensus       194 ~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~  270 (296)
T 3e5z_A          194 ATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASAGDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRT  270 (296)
T ss_dssp             EEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEETTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCE
T ss_pred             eEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEcCCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCE
Confidence            99999986 2222   1222 11223457899999998777664446666543 556667777777 899999 689888


Q ss_pred             EEEeecCCeEE
Q psy12456        148 LASSSMDRTLK  158 (162)
Q Consensus       148 l~s~s~D~~i~  158 (162)
                      |..++.++..+
T Consensus       271 L~v~t~~~l~~  281 (296)
T 3e5z_A          271 LYMTVSTEFWS  281 (296)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEcCCeEEE
Confidence            87777775443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.35  E-value=6.3e-11  Score=86.50  Aligned_cols=140  Identities=14%  Similarity=0.131  Sum_probs=100.3

Q ss_pred             CCCcEEEEee------CCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe----------CCCeEEEEEccc
Q psy12456         18 PDGLIFGIGT------SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA----------DENCVKLWDLRK   81 (162)
Q Consensus        18 ~~g~~~a~g~------~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~d~~v~~wd~~~   81 (162)
                      |+++++.+..      .|+.|.+||..+++.+..+..+..+  .++|+||++++.+++          .+++|.+||..+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            3566555543      3789999999999988888876655  899999999999886          367899999988


Q ss_pred             CcceeEEeeCC-----CCCeeEEEECCCCCEEEEecc--c--EEEEEeCCceEEEE-eecCcccEEEEEECCCC-ceEEE
Q psy12456         82 LKNFKTLQLDP-----NYEIRDLCFDQSGTYMAVAGT--D--VRVFLCKQWQELAM-FNEHTAMVTGVRFGTHA-HYLAS  150 (162)
Q Consensus        82 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~--~--~~i~~~~~~~~~~~-~~~h~~~v~~~~~s~~~-~~l~s  150 (162)
                      .+.+..+....     ......+.++|+|+++.+++.  +  +.+++..+.+.+.. +....  ...+.+.|++ ..+++
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~--~~~v~~~p~~~~~~~~  168 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG--CWSVIPQPNRPRSFMT  168 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT--EEEEEECTTSSSEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC--cceeEEcCCCCeeEEE
Confidence            77776665431     123567899999999988753  2  77888877777766 44321  2334556654 56667


Q ss_pred             eecCCeEEEee
Q psy12456        151 SSMDRTLKLYS  161 (162)
Q Consensus       151 ~s~D~~i~iw~  161 (162)
                      .+.|+.+.+|+
T Consensus       169 ~~~dg~~~~v~  179 (361)
T 2oiz_A          169 ICGDGGLLTIN  179 (361)
T ss_dssp             EETTSSEEEEE
T ss_pred             ECCCCcEEEEE
Confidence            77777776664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.35  E-value=3e-10  Score=78.84  Aligned_cols=151  Identities=8%  Similarity=0.016  Sum_probs=103.4

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc-CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ-LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      ..+..+++.|+|+++++.. ++.|.+||.+.+.. ..+. .....+..++++++++.+++...++.|..|+..+......
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~  144 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL  144 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence            4567889999999777766 88999999876543 3333 2235688999999999888777788999998654332211


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                       .......+..+++++++.+.++...+  +.+++............+...+.++++.+++.++++...++.|..|+.
T Consensus       145 -~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          145 -PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             -CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred             -ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence             11112246789999999877666544  444443333322222333366889999999988888877888998873

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.34  E-value=1e-09  Score=84.61  Aligned_cols=152  Identities=11%  Similarity=0.123  Sum_probs=107.8

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECC--CCeeeeeccCCCCCEEEEEEc----cCCCEEEEEeC-CCeEEEEEccc
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLK--KQKNVTDFQLDAGPIQALSFS----ENGYYLATAAD-ENCVKLWDLRK   81 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~--~~~~~~~~~~~~~~v~~i~~~----~~~~~l~s~~~-d~~v~~wd~~~   81 (162)
                      ..+..+.++|||+++.+++.|+.|.+||+.  +.+.+.++..... ...++|+    |||+++++++. ++++.++|..+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            356689999999999999999999999996  7788888776443 5689999    69998888775 58999999988


Q ss_pred             CcceeEEeeC----------CCCCeeEEEECCCCCEEEEeccc-EEE--EEeCCce--EEEEeecCcccEEEEEECCCCc
Q psy12456         82 LKNFKTLQLD----------PNYEIRDLCFDQSGTYMAVAGTD-VRV--FLCKQWQ--ELAMFNEHTAMVTGVRFGTHAH  146 (162)
Q Consensus        82 ~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~-~~i--~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~  146 (162)
                      .+.+......          +...+..+..++++..++..-.+ .+|  +++...+  .+..+. .......+.|+|+++
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHR  354 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSC
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCC
Confidence            8776655421          12246778888876655554332 344  4433321  222222 334577889999999


Q ss_pred             eEEEee-cCCeEEEeeC
Q psy12456        147 YLASSS-MDRTLKLYSL  162 (162)
Q Consensus       147 ~l~s~s-~D~~i~iw~~  162 (162)
                      ++..+. .+++|.++|+
T Consensus       355 ~~~va~~~sn~V~ViD~  371 (567)
T 1qks_A          355 YFITAANARNKLVVIDT  371 (567)
T ss_dssp             EEEEEEGGGTEEEEEET
T ss_pred             EEEEEeCCCCeEEEEEC
Confidence            876554 5788999884

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.31  E-value=4.6e-09  Score=75.10  Aligned_cols=152  Identities=10%  Similarity=0.036  Sum_probs=100.7

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCC----CcEEEEECCCCeeeeecc--CCCCCEEEEEEccCCCEEEEEeC------CCeEE
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSD----SQVQIWDLKKQKNVTDFQ--LDAGPIQALSFSENGYYLATAAD------ENCVK   75 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~d----g~i~~wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~------d~~v~   75 (162)
                      ...+.+++++|+|+++++...+    +.|.+||.++++....+.  .+...+..++++|+++++++...      .+.|.
T Consensus        86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~  165 (333)
T 2dg1_A           86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  165 (333)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence            4568999999999988887766    689999988776543332  23457899999999988877654      24455


Q ss_pred             EEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEec-cc--EEEEEeCC-ceEEE--------EeecCcccEEEEEECC
Q psy12456         76 LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG-TD--VRVFLCKQ-WQELA--------MFNEHTAMVTGVRFGT  143 (162)
Q Consensus        76 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~--~~i~~~~~-~~~~~--------~~~~h~~~v~~~~~s~  143 (162)
                      .+|....+. ..+.. ....+..++|+|++.++..+. .+  +.+|+... ...+.        .+..+ ..+..+.+++
T Consensus       166 ~~~~~~~~~-~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~  242 (333)
T 2dg1_A          166 YVSPDFRTV-TPIIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDS  242 (333)
T ss_dssp             EECTTSCCE-EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBT
T ss_pred             EEeCCCCEE-EEeec-CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECC
Confidence            555443222 22211 112368899999998665543 23  66666532 11111        11222 3578899999


Q ss_pred             CCceEEEeecCCeEEEeeC
Q psy12456        144 HAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       144 ~~~~l~s~s~D~~i~iw~~  162 (162)
                      +++++++...++.|.+||.
T Consensus       243 ~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          243 DDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             TCCEEEEEETTTEEEEECT
T ss_pred             CCCEEEEEcCCCEEEEECC
Confidence            9998888878889999873

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.29  E-value=9e-10  Score=84.94  Aligned_cols=142  Identities=12%  Similarity=0.112  Sum_probs=108.0

Q ss_pred             CCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc--cCcceeEEeeCCCC
Q psy12456         17 HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR--KLKNFKTLQLDPNY   94 (162)
Q Consensus        17 ~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~--~~~~~~~~~~~~~~   94 (162)
                      .|.+.++++...+++|.++|..+++.+..+.... .+..+.|+||++++.+++.|+.|.+||+.  +.+.+.....  ..
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~  240 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GS  240 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CS
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CC
Confidence            4556778888889999999999999998887543 46689999999999999999999999995  6665555543  22


Q ss_pred             CeeEEEEC----CCCCEEEEeccc---EEEEEeCCceEEEEeec----------Ccc-cEEEEEECCCCc-eEEEeecCC
Q psy12456         95 EIRDLCFD----QSGTYMAVAGTD---VRVFLCKQWQELAMFNE----------HTA-MVTGVRFGTHAH-YLASSSMDR  155 (162)
Q Consensus        95 ~v~~~~~~----~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~----------h~~-~v~~~~~s~~~~-~l~s~s~D~  155 (162)
                      ..+.++|+    |+|+++.+++..   +.+++..+.+.++.+..          |.. .+..+.+++++. ++++...++
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g  320 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  320 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCC
Confidence            46889999    699999988754   67777777777665542          222 577888888755 455556678


Q ss_pred             eEEEee
Q psy12456        156 TLKLYS  161 (162)
Q Consensus       156 ~i~iw~  161 (162)
                      .|.++|
T Consensus       321 ~v~~vd  326 (567)
T 1qks_A          321 KILLVD  326 (567)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            887776

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.29  E-value=7.8e-11  Score=85.80  Aligned_cols=149  Identities=12%  Similarity=0.080  Sum_probs=94.3

Q ss_pred             CCcEEEEEeCC-CCcEEEEeeCC------CcEEEEECCCCeeeeeccCC-CCCEEEEEEccCCCEEEEEeCC-----CeE
Q psy12456          8 GPTLTTAQLHP-DGLIFGIGTSD------SQVQIWDLKKQKNVTDFQLD-AGPIQALSFSENGYYLATAADE-----NCV   74 (162)
Q Consensus         8 ~~~v~~~~~~~-~g~~~a~g~~d------g~i~~wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~d-----~~v   74 (162)
                      ...+..+.|+| +|..++..+.+      ..|.+||+..++........ ...+..++|+|++++|+.++.+     +.|
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred             CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence            34577889999 88877666543      36888898765543333311 2357789999999988777544     459


Q ss_pred             EEEEcccCcceeEEeeCCCCCeeEEEECC-CCCEEEEec------------------ccEEEEEeCCceEEEEeecCcc-
Q psy12456         75 KLWDLRKLKNFKTLQLDPNYEIRDLCFDQ-SGTYMAVAG------------------TDVRVFLCKQWQELAMFNEHTA-  134 (162)
Q Consensus        75 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~------------------~~~~i~~~~~~~~~~~~~~h~~-  134 (162)
                      .+||+.+.+....... ..  .. ..|+| ++++++.++                  ..+.+++....+. ..+..+.. 
T Consensus       267 ~~~d~~~g~~~~l~~~-~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~  341 (396)
T 3c5m_A          267 YKANPETLENEEVMVM-PP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTS  341 (396)
T ss_dssp             EEECTTTCCEEEEEEC-CS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCC
T ss_pred             EEEECCCCCeEEeeeC-CC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCc
Confidence            9999976553322222 11  33 78999 999888754                  2244455444332 33444443 


Q ss_pred             ----------cEEEEEECCCCceEEEeec-CCeEEEee
Q psy12456        135 ----------MVTGVRFGTHAHYLASSSM-DRTLKLYS  161 (162)
Q Consensus       135 ----------~v~~~~~s~~~~~l~s~s~-D~~i~iw~  161 (162)
                                .+..+.|+|+++.|+.++. ++...+|.
T Consensus       342 ~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~  379 (396)
T 3c5m_A          342 WDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI  379 (396)
T ss_dssp             CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence                      2566789999998876654 55666664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.28  E-value=2.8e-10  Score=81.90  Aligned_cols=149  Identities=7%  Similarity=0.019  Sum_probs=105.1

Q ss_pred             EEEEeCCCCcEEEEee-CCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC----------CeEEEEEcc
Q psy12456         12 TTAQLHPDGLIFGIGT-SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE----------NCVKLWDLR   80 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~-~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----------~~v~~wd~~   80 (162)
                      ..+++ .++.++++.. .++.|.++|+++++.+..+..... ...++++|++++++++..+          +.|.++|..
T Consensus       134 ~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~  211 (328)
T 3dsm_A          134 EQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE  211 (328)
T ss_dssp             CCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred             ceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence            34555 4566666654 489999999999998887765433 4578999999888777665          789999998


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEE--EeecCcccEEEEEECC-CCceEEEe----ec
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA--MFNEHTAMVTGVRFGT-HAHYLASS----SM  153 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~h~~~v~~~~~s~-~~~~l~s~----s~  153 (162)
                      +.+....+..........++++|++..+.++...+.+++..+.+...  .+..+.....+++++| ++..+++.    ..
T Consensus       212 t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~  291 (328)
T 3dsm_A          212 TFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQ  291 (328)
T ss_dssp             TTEEEEEEECCTTCCCEEEEECTTSCEEEEESSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSS
T ss_pred             CCeEEEEEecCCCCCceeEEEecCCCEEEEEccEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccccc
Confidence            77655555443223478999999998888877666666655443321  1222245688999998 56676776    66


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      ++.|.+||.
T Consensus       292 ~~~V~v~d~  300 (328)
T 3dsm_A          292 QGIVYRYSP  300 (328)
T ss_dssp             EEEEEEECT
T ss_pred             CCEEEEECC
Confidence            888999873

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.28  E-value=7.6e-09  Score=72.44  Aligned_cols=152  Identities=7%  Similarity=0.010  Sum_probs=104.4

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      ...+..+++.|+|.++++...++.|..||.+.......+......+..+++++++.++++...++.|..||. +.+. ..
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~  133 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-RE  133 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-EE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-EE
Confidence            457889999999999988877899999998632222222234457889999999988888777889999998 3332 22


Q ss_pred             Eee-CCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEE--eecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         88 LQL-DPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAM--FNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        88 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +.. .....+..+++.+++.+.++...+..++.+.....+..  ...+...+.++.+.++++++++...++.|..|+
T Consensus       134 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~  210 (299)
T 2z2n_A          134 YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT  210 (299)
T ss_dssp             EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence            222 12345789999999987776654433443332222222  233445688999999999888776778888876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.28  E-value=8.6e-09  Score=72.18  Aligned_cols=149  Identities=7%  Similarity=0.002  Sum_probs=104.1

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeee-eccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVT-DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      ...+..+++.|+|.++++...++.|..||. +++... ....+...+..++++++++.+++...++.|..||. +.+. .
T Consensus        98 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~  174 (299)
T 2z2n_A           98 DSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI-T  174 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-E
T ss_pred             CCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE-E
Confidence            456889999999999988878899999998 444332 23334457899999999988887777789999998 4332 2


Q ss_pred             EEee-CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe--ecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         87 TLQL-DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF--NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~-~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .+.. .....+..+++.+++.+.++...+  +.+++. ..+ +..+  ..+...+.++.+.++++.+++...++.|..||
T Consensus       175 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d  252 (299)
T 2z2n_A          175 EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE-ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLT  252 (299)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC-EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred             EeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc-EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence            2222 123357889999999876665433  444443 222 2222  33456789999999999887766778888876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.27  E-value=2.1e-10  Score=90.81  Aligned_cols=150  Identities=14%  Similarity=0.088  Sum_probs=97.6

Q ss_pred             cEEEEEeCCCCcEEEEeeCC-----CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCe-----------
Q psy12456         10 TLTTAQLHPDGLIFGIGTSD-----SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENC-----------   73 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~-----------   73 (162)
                      .+...+|+|||+++|.+..+     .+|++||+.+++.+.. ..+...+..++|+|| +.|+.++.+..           
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            67889999999999887764     4699999999887543 112112246799999 99988887654           


Q ss_pred             ---EEEEEcccCcce--eEEeeCC-CCCeeEEEECCCCCEEEEecc-------cEEEEEeCCce-E-EEEeecCcccEEE
Q psy12456         74 ---VKLWDLRKLKNF--KTLQLDP-NYEIRDLCFDQSGTYMAVAGT-------DVRVFLCKQWQ-E-LAMFNEHTAMVTG  138 (162)
Q Consensus        74 ---v~~wd~~~~~~~--~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~-~-~~~~~~h~~~v~~  138 (162)
                         |.+|++.+.+..  ..+.... ...+..+.|+|+|++++..+.       ++.+++..... . ...+..+...+..
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~  321 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD  321 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred             CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence               888998765432  2222211 123778999999998887653       24444544431 2 4445555544544


Q ss_pred             EEECCCCceEEEeecC----CeEEEeeC
Q psy12456        139 VRFGTHAHYLASSSMD----RTLKLYSL  162 (162)
Q Consensus       139 ~~~s~~~~~l~s~s~D----~~i~iw~~  162 (162)
                      .. +|+++.|+..+.+    +.|.+|++
T Consensus       322 ~~-~~dg~~l~~~s~~~~~~~~l~~~d~  348 (741)
T 1yr2_A          322 FV-DGVGDQLWFVSGDGAPLKKIVRVDL  348 (741)
T ss_dssp             EE-EEETTEEEEEECTTCTTCEEEEEEC
T ss_pred             EE-eccCCEEEEEECCCCCCCEEEEEeC
Confidence            43 4888887766653    44777764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.25  E-value=2.5e-09  Score=76.92  Aligned_cols=150  Identities=10%  Similarity=0.029  Sum_probs=103.6

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCC-----CCEEEEEEccCCCEEEEEe-CCCeEEEEEccc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-----GPIQALSFSENGYYLATAA-DENCVKLWDLRK   81 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~l~s~~-~d~~v~~wd~~~   81 (162)
                      ......++++|+++++++...++.|.+||+++++....+....     .....+++ .++..+++.. .++.|.++|..+
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t  161 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTET  161 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCC
Confidence            4567788999999777766578999999999998877766433     13346677 4444444433 488999999988


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCEEEEeccc------------EEEEEeCCceEEEEeecC-cccEEEEEECCCCceE
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD------------VRVFLCKQWQELAMFNEH-TAMVTGVRFGTHAHYL  148 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l  148 (162)
                      .+....+...  .....+.++|+|++++++..+            +.+++..+.+....+... ......++|+|+++.+
T Consensus       162 ~~~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~l  239 (328)
T 3dsm_A          162 DKVVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTL  239 (328)
T ss_dssp             TEEEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEE
T ss_pred             CeEEEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEE
Confidence            7766655542  235788999999887776543            455555556665555432 2368899999988877


Q ss_pred             EEeecCCeEEEeeC
Q psy12456        149 ASSSMDRTLKLYSL  162 (162)
Q Consensus       149 ~s~s~D~~i~iw~~  162 (162)
                      ..+..  .|.+||.
T Consensus       240 yv~~~--~v~~~d~  251 (328)
T 3dsm_A          240 YWINN--DIWRMPV  251 (328)
T ss_dssp             EEESS--SEEEEET
T ss_pred             EEEcc--EEEEEEC
Confidence            65543  7777763

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.24  E-value=2.1e-09  Score=75.75  Aligned_cols=148  Identities=10%  Similarity=0.057  Sum_probs=107.7

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCC-CCEEEEEEccCCCEEEEEeC-CCeEEEEEcccCccee
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAAD-ENCVKLWDLRKLKNFK   86 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~-d~~v~~wd~~~~~~~~   86 (162)
                      ..+..+++.|+|++++  +.++.|..||. +++.+..++.+. ..+.++++.++|+++++.+. ++.+..+|. +.+.+.
T Consensus        37 ~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~  112 (276)
T 3no2_A           37 WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLS  112 (276)
T ss_dssp             CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEE
T ss_pred             CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEE
Confidence            3577889999999998  45788999998 789998888753 46888999999999999887 777777775 445444


Q ss_pred             EEeeCCC-----CCeeEEEECCCCCEEEEecccEEEEEeC-CceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         87 TLQLDPN-----YEIRDLCFDQSGTYMAVAGTDVRVFLCK-QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        87 ~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      .+.....     ...+.++..++|.++++...+.+|..++ ..+.+-++.... ...++.+.++++.+++++.++.|..+
T Consensus       113 ~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~~~~v~~~  191 (276)
T 3no2_A          113 KTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSG-TPFSSAFLDNGDCLVACGDAHCFVQL  191 (276)
T ss_dssp             EEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSS-CCCEEEECTTSCEEEECBTTSEEEEE
T ss_pred             EEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCC-CccceeEcCCCCEEEEeCCCCeEEEE
Confidence            4443211     1345567889999999887764444332 266666666543 35566778899999888888788777


Q ss_pred             e
Q psy12456        161 S  161 (162)
Q Consensus       161 ~  161 (162)
                      |
T Consensus       192 d  192 (276)
T 3no2_A          192 N  192 (276)
T ss_dssp             C
T ss_pred             e
Confidence            6

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.24  E-value=1.2e-09  Score=86.01  Aligned_cols=148  Identities=13%  Similarity=0.087  Sum_probs=99.3

Q ss_pred             EEEEEeCCCCcEEEEeeCCCc----------------EEEEECCCCee----eeeccCCCCCEEEEEEccCCCEEEEEeC
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQ----------------VQIWDLKKQKN----VTDFQLDAGPIQALSFSENGYYLATAAD   70 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~----------------i~~wd~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~s~~~   70 (162)
                      +..++|+|||+.|+.++.++.                |.+|++.+++.    +.....+...+..++|+|||++|+..+.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~  252 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR  252 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence            456899999999999988766                99999987652    2232334556789999999999988765


Q ss_pred             -----CCeEEEEEccc------Cc-ceeEEeeCCCCCeeEEEECCCCCEEEEecc----cEEEE--EeCCce--EEEEee
Q psy12456         71 -----ENCVKLWDLRK------LK-NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT----DVRVF--LCKQWQ--ELAMFN  130 (162)
Q Consensus        71 -----d~~v~~wd~~~------~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~i~--~~~~~~--~~~~~~  130 (162)
                           +..|.+||+.+      .+ ....+..+.. .+.. .|+|+|..++..+.    +.+|+  +....+  ....+.
T Consensus       253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE-GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             ccCCCccEEEEEECcccccccCCccceEEeeCCCC-cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence                 56899999975      32 2344433322 2333 57888887766543    23444  443332  123334


Q ss_pred             cCcc--cEEEEEECCCCceEEEeecCCeEEEe
Q psy12456        131 EHTA--MVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus       131 ~h~~--~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      .|..  .+..+.|++++.++++...|+..++|
T Consensus       331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          331 PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             CCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred             CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence            4433  68889999888888999999865554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.19  E-value=1.1e-08  Score=72.55  Aligned_cols=148  Identities=11%  Similarity=0.184  Sum_probs=98.9

Q ss_pred             cEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456         10 TLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus        10 ~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      ---...|+| ++.++.+...++.|..||.++++. ..+. ....+.+++++++++++++ . +..|.+||..+.+.....
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE
Confidence            345678898 566788888889999999987654 3333 2357899999999995554 4 467999998754432222


Q ss_pred             eeC---CCCCeeEEEECCCCCEEEEec-----------ccEEEEEeCCceEEEEeecCcccEEEEEECCCCceE-EEeec
Q psy12456         89 QLD---PNYEIRDLCFDQSGTYMAVAG-----------TDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYL-ASSSM  153 (162)
Q Consensus        89 ~~~---~~~~v~~~~~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~  153 (162)
                      ...   ....+.+++++|+|.+.++..           ....+|.+.....+.....+......++|+|+++.+ ++.+.
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~  169 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCC
Confidence            211   123478899999999766542           125677665332232333344457889999999855 66677


Q ss_pred             CCeEEEee
Q psy12456        154 DRTLKLYS  161 (162)
Q Consensus       154 D~~i~iw~  161 (162)
                      ++.|..|+
T Consensus       170 ~~~i~~~~  177 (297)
T 3g4e_A          170 SYSVDAFD  177 (297)
T ss_dssp             GTEEEEEE
T ss_pred             CCcEEEEe
Confidence            88888886

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.19  E-value=1.4e-08  Score=74.50  Aligned_cols=74  Identities=14%  Similarity=0.015  Sum_probs=56.8

Q ss_pred             EEEeCCCCcEEEEee----------CCCcEEEEECCCCeeeeeccCC-------CCCEEEEEEccCCCEEEEEeC--CCe
Q psy12456         13 TAQLHPDGLIFGIGT----------SDSQVQIWDLKKQKNVTDFQLD-------AGPIQALSFSENGYYLATAAD--ENC   73 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~----------~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~s~~~--d~~   73 (162)
                      .++++|||+.+++..          .++.|.+||..+.+.+..+...       ...-..++|+|||++|+.++.  +..
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            789999999888875          3678999999988887766532       122357899999999998874  478


Q ss_pred             EEEEEcccCcceeE
Q psy12456         74 VKLWDLRKLKNFKT   87 (162)
Q Consensus        74 v~~wd~~~~~~~~~   87 (162)
                      |.++| .+.+.+..
T Consensus       150 v~viD-~t~~~~~~  162 (373)
T 2mad_H          150 VGLVV-QGGSSDDQ  162 (373)
T ss_pred             EEEEE-CCCCEEeE
Confidence            99999 77654433

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.18  E-value=5.2e-08  Score=68.20  Aligned_cols=152  Identities=9%  Similarity=0.037  Sum_probs=105.7

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeee-eccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVT-DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      +...+.++++.++|+++++...++.|.+||.. ++... .+..+...+.+++++++++.+++...++.|..||.. .+ .
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-~   94 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-F   94 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-E
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC-e
Confidence            35678899999999999888788999999987 54332 223334578899999999988877778889999976 33 2


Q ss_pred             eEEeeC-CCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEe--ecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 KTLQLD-PNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMF--NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..+... ....+..+++.+++.+.++...+..++.++....+..+  ......+.++.+.++++++++...++.|..++
T Consensus        95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            333321 22457899999999887776544344433322222222  23445688999999999877776677787775

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.17  E-value=7.6e-08  Score=67.34  Aligned_cols=151  Identities=8%  Similarity=-0.018  Sum_probs=103.3

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeee-eeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      ...+..+++.++|+++++...++.|..||.+ ++.. .........+..++++++++++++...++.|..||.. .+. .
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~  137 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-Y  137 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-E
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-E
Confidence            3568889999999988887778899999987 5432 2223234578899999999988877778889999876 332 2


Q ss_pred             EEeeC-CCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEe--ecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         87 TLQLD-PNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMF--NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .+... ....+..+++.+++.+.++...+..++.+.....+..+  ..+...+.++.+.++++++++....+.|..|+
T Consensus       138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          138 EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence            22222 23457889999999866665444334433322222222  23445688999999998887776677788776

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.16  E-value=1e-08  Score=72.44  Aligned_cols=150  Identities=10%  Similarity=0.066  Sum_probs=98.7

Q ss_pred             cEEEEEeCCCCcEEEE-------eeCCCcEEEEECCCCeeeeecc----CCCCCEEEEEEccC-CCEEEEEeCCCeEEEE
Q psy12456         10 TLTTAQLHPDGLIFGI-------GTSDSQVQIWDLKKQKNVTDFQ----LDAGPIQALSFSEN-GYYLATAADENCVKLW   77 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~-------g~~dg~i~~wd~~~~~~~~~~~----~~~~~v~~i~~~~~-~~~l~s~~~d~~v~~w   77 (162)
                      ....++|+++|.++++       +..++.|.+||..+++......    .+...+.+++++++ ++++++.. ...|..|
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~   97 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEE
Confidence            4578899999998888       6778999999987776532211    13356889999999 76555444 4478889


Q ss_pred             EcccCcceeE-Eee---CCCCCeeEEEECCCCCEEEEeccc---------------EEEEEeCCceEEEEeecCcccEEE
Q psy12456         78 DLRKLKNFKT-LQL---DPNYEIRDLCFDQSGTYMAVAGTD---------------VRVFLCKQWQELAMFNEHTAMVTG  138 (162)
Q Consensus        78 d~~~~~~~~~-~~~---~~~~~v~~~~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~~~~~~h~~~v~~  138 (162)
                      |.. .+.... ...   .....+.++++++++.+.++...+               ..++.+.....+..+..+......
T Consensus        98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~  176 (314)
T 1pjx_A           98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNG  176 (314)
T ss_dssp             ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEE
T ss_pred             eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcce
Confidence            986 332211 111   111247889999999887776543               566665432223333333445688


Q ss_pred             EEEC----CCCce-EEEeecCCeEEEee
Q psy12456        139 VRFG----THAHY-LASSSMDRTLKLYS  161 (162)
Q Consensus       139 ~~~s----~~~~~-l~s~s~D~~i~iw~  161 (162)
                      ++|+    |+++. +++...++.|.+|+
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~  204 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYD  204 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEE
Confidence            9999    99864 45556678898886

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.15  E-value=4.4e-09  Score=74.41  Aligned_cols=152  Identities=9%  Similarity=0.072  Sum_probs=100.2

Q ss_pred             CcEEEEEeCCCCcEEEEeeCC---------------CcEEEEECCCCeeeeeccCCCCCEEEEEEc----cCCCEEEEE-
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSD---------------SQVQIWDLKKQKNVTDFQLDAGPIQALSFS----ENGYYLATA-   68 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~d---------------g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~----~~~~~l~s~-   68 (162)
                      ..+..++++|+|+++++...+               +.|..||.+ ++..... .+......++++    |+++.+..+ 
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~  194 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEE
Confidence            357899999999988877655               567777765 4433222 223356789999    998655444 


Q ss_pred             eCCCeEEEEEcc-cCcc--eeEEe-eC-CC-CCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEE
Q psy12456         69 ADENCVKLWDLR-KLKN--FKTLQ-LD-PN-YEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVR  140 (162)
Q Consensus        69 ~~d~~v~~wd~~-~~~~--~~~~~-~~-~~-~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~  140 (162)
                      ..++.|.+||+. +.+.  ...+. .. .. ..+..++++++|.+.++...+  +.+++..+.+.+..+..+...+.+++
T Consensus       195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~  274 (314)
T 1pjx_A          195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLH  274 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEE
T ss_pred             CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEE
Confidence            567899999976 2221  11111 11 11 346789999999887775444  55555443444555666667899999


Q ss_pred             ECCCCc-eEEEeecCCeEEEeeC
Q psy12456        141 FGTHAH-YLASSSMDRTLKLYSL  162 (162)
Q Consensus       141 ~s~~~~-~l~s~s~D~~i~iw~~  162 (162)
                      |+|+++ ++++...++.|..|++
T Consensus       275 ~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          275 FKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCeEEEEeC
Confidence            999998 5566666778888764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.13  E-value=6e-09  Score=76.61  Aligned_cols=115  Identities=14%  Similarity=0.089  Sum_probs=89.5

Q ss_pred             EEeCCCCcEEEEeeC-----CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe----------CCCeEEEEE
Q psy12456         14 AQLHPDGLIFGIGTS-----DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA----------DENCVKLWD   78 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~-----dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~d~~v~~wd   78 (162)
                      ....|+++.+.+...     ++.|.++|..+++.+.++.....| . ++++||++++..++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            456789988877765     689999999999999998866666 4 99999999887776          367899999


Q ss_pred             cccCcceeEEeeCC------CCCeeEEEECCCCCEEEEecc----cEEEEEeCCceEEEEee
Q psy12456         79 LRKLKNFKTLQLDP------NYEIRDLCFDQSGTYMAVAGT----DVRVFLCKQWQELAMFN  130 (162)
Q Consensus        79 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~  130 (162)
                      ..+.+.+..+....      ......+.|+|+|+++.+++.    .+.+++..+.+.+.++.
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~  177 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  177 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            99888777765432      113567899999998887753    26788888888777764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.11  E-value=3.2e-08  Score=71.06  Aligned_cols=147  Identities=12%  Similarity=0.060  Sum_probs=97.4

Q ss_pred             EEEEEeCCC-CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEe
Q psy12456         11 LTTAQLHPD-GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        11 v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~   89 (162)
                      .....|+|+ +.++.++..++.|..||.++++.. .+.. ...+.+++++|+++++++. .+ .|.+||..+.+......
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~  126 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAE  126 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEEC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEee
Confidence            456789996 567777778899999999876543 3332 3578999999999877654 44 48899986654322111


Q ss_pred             eC---CCCCeeEEEECCCCCEEEEecc------cEEEEEeCCceEEEEeecCcccEEEEEECCCCceE-EEeecCCeEEE
Q psy12456         90 LD---PNYEIRDLCFDQSGTYMAVAGT------DVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTLKL  159 (162)
Q Consensus        90 ~~---~~~~v~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~i  159 (162)
                      ..   ....+.+++++|+|.+.++...      ...+|.+... .+..+..+......++|+|+++.+ ++.+.++.|.+
T Consensus       127 ~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~  205 (326)
T 2ghs_A          127 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  205 (326)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             CCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence            11   1234788999999987665432      2556655433 233333333457789999999865 45556788888


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      |++
T Consensus       206 ~d~  208 (326)
T 2ghs_A          206 VPL  208 (326)
T ss_dssp             EEB
T ss_pred             EEc
Confidence            873

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.09  E-value=4.1e-09  Score=82.97  Aligned_cols=153  Identities=12%  Similarity=0.181  Sum_probs=93.5

Q ss_pred             CCCcEEEEEeCCCCcEEEE-----eeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCC---------
Q psy12456          7 GGPTLTTAQLHPDGLIFGI-----GTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADEN---------   72 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~-----g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~---------   72 (162)
                      +...+..+.|||||+++|.     |+....|++||+.+++.+.. ..+......++|+ |++.|+.++.+.         
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~  204 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR  204 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence            4457888999999999984     33346799999999886543 1111112467899 999999988774         


Q ss_pred             ----eEEEEEcccCcceeEEeeCC----CCCeeEEEECCCCCEEEEecc----cEEEEE--eCCce-EEEEeecCcccEE
Q psy12456         73 ----CVKLWDLRKLKNFKTLQLDP----NYEIRDLCFDQSGTYMAVAGT----DVRVFL--CKQWQ-ELAMFNEHTAMVT  137 (162)
Q Consensus        73 ----~v~~wd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~----~~~i~~--~~~~~-~~~~~~~h~~~v~  137 (162)
                          .|.+|++.+.+.........    ......+.++|+|++++....    ...+|.  ....+ ....+..+.....
T Consensus       205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~  284 (693)
T 3iuj_A          205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV  284 (693)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred             CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence                38999987654322221111    223577899999998866432    124444  33331 3444555555554


Q ss_pred             EEEECCCCceE-EEeecC---CeEEEeeC
Q psy12456        138 GVRFGTHAHYL-ASSSMD---RTLKLYSL  162 (162)
Q Consensus       138 ~~~~s~~~~~l-~s~s~D---~~i~iw~~  162 (162)
                      .. +++++..| +....|   +.|..+++
T Consensus       285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~  312 (693)
T 3iuj_A          285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDA  312 (693)
T ss_dssp             EE-EEEETTEEEEEECTTCTTCEEEEEET
T ss_pred             EE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence            44 55555544 444443   45666653

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.09  E-value=1.1e-08  Score=80.52  Aligned_cols=146  Identities=16%  Similarity=0.101  Sum_probs=95.5

Q ss_pred             EEEEeCCCCcEEEEeeCCCc-------------EEEEECCCCe----eeeeccCCCCCEEEEEEccCCCEEEEEeCCC--
Q psy12456         12 TTAQLHPDGLIFGIGTSDSQ-------------VQIWDLKKQK----NVTDFQLDAGPIQALSFSENGYYLATAADEN--   72 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg~-------------i~~wd~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~--   72 (162)
                      ..++|+|||+.|+.++.|..             |++|++.+++    .+.....+...+..++|+|||++|+..+.++  
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~  250 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS  250 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence            56889999999999998776             9999998775    3333344556788999999999998887665  


Q ss_pred             --eEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEec---ccEEEEEeC--CceE---EEEeecC-cccEEEEEE
Q psy12456         73 --CVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG---TDVRVFLCK--QWQE---LAMFNEH-TAMVTGVRF  141 (162)
Q Consensus        73 --~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~i~~~~--~~~~---~~~~~~h-~~~v~~~~~  141 (162)
                        .|.+||..+.+ ...+..+.. ......+ +++.+++...   .+.+|+.+.  ..+.   ...+..+ ...+..++|
T Consensus       251 ~~~l~~~~~~~~~-~~~l~~~~~-~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~  327 (695)
T 2bkl_A          251 ENDVYWKRPGEKD-FRLLVKGVG-AKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSI  327 (695)
T ss_dssp             EEEEEEECTTCSS-CEEEEECSS-CCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEE
T ss_pred             ceEEEEEcCCCCc-eEEeecCCC-ceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEE
Confidence              56666554332 333333333 2344445 5555444443   234555443  3221   2223333 456888888


Q ss_pred             CCCCceEEEeecCCeEEEee
Q psy12456        142 GTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       142 s~~~~~l~s~s~D~~i~iw~  161 (162)
                      + +++++++...|+..++|.
T Consensus       328 ~-~~~lv~~~~~dg~~~l~~  346 (695)
T 2bkl_A          328 V-GGHLSLEYLKDATSEVRV  346 (695)
T ss_dssp             E-TTEEEEEEEETTEEEEEE
T ss_pred             E-CCEEEEEEEECCEEEEEE
Confidence            8 678889999999988884

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.08  E-value=4.3e-08  Score=69.62  Aligned_cols=148  Identities=9%  Similarity=0.001  Sum_probs=97.8

Q ss_pred             CcEEEEEeCCCCc-EEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456          9 PTLTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus         9 ~~v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      .......|+|+|+ ++.++..++.|..|+.. ++ ...+..+...+..++++++|+++++...++.|..||.. .+ ...
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-~~~  120 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-AHL  120 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEE
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC-EEE
Confidence            3456788999998 77788888999999984 43 34454455678999999999977766667889999875 22 222


Q ss_pred             Eee----CCCCCeeEEEECCCCCEEEE----ecc-------------cEEEEEeCC-ceEEEEeecCcccEEEEEECCCC
Q psy12456         88 LQL----DPNYEIRDLCFDQSGTYMAV----AGT-------------DVRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHA  145 (162)
Q Consensus        88 ~~~----~~~~~v~~~~~~~~~~~~~~----~~~-------------~~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~  145 (162)
                      +..    .....+.++++.|+|.+.++    |..             ...|+.+.. ...+..+. .......++|+|++
T Consensus       121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg  199 (305)
T 3dr2_A          121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDE  199 (305)
T ss_dssp             EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTS
T ss_pred             EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCC
Confidence            111    11123678999999998876    321             245665543 12222222 34457889999999


Q ss_pred             ceEEEeecC------CeEEEee
Q psy12456        146 HYLASSSMD------RTLKLYS  161 (162)
Q Consensus       146 ~~l~s~s~D------~~i~iw~  161 (162)
                      +.|..+..+      +.|..|+
T Consensus       200 ~~lyv~~~~~~~~~~~~i~~~~  221 (305)
T 3dr2_A          200 QTLYVSQTPEQGHGSVEITAFA  221 (305)
T ss_dssp             SEEEEEECCC---CCCEEEEEE
T ss_pred             CEEEEEecCCcCCCCCEEEEEE
Confidence            866555443      6788776

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.08  E-value=9.6e-08  Score=67.58  Aligned_cols=150  Identities=12%  Similarity=0.080  Sum_probs=95.1

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCC----CCCEEEEEEccCCCEEEEEeCC---------CeEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLD----AGPIQALSFSENGYYLATAADE---------NCVK   75 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~s~~~d---------~~v~   75 (162)
                      ..+.+++++|+|+++++.  ++.|.+||.++++........    ...+..++++|+|+++++....         ..-.
T Consensus        54 ~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~  131 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGA  131 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred             CceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcE
Confidence            468899999999966653  567999999877643322211    2347889999999977655322         2345


Q ss_pred             EEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc-c--EEEEEeC--Cce-----EEEEeecCcccEEEEEECCCC
Q psy12456         76 LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-D--VRVFLCK--QWQ-----ELAMFNEHTAMVTGVRFGTHA  145 (162)
Q Consensus        76 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~i~~~~--~~~-----~~~~~~~h~~~v~~~~~s~~~  145 (162)
                      +|.+........... .......++|+|+++.+..+.. +  +.+++..  ...     .+..+..+.....++++.+++
T Consensus       132 l~~~d~~g~~~~~~~-~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G  210 (297)
T 3g4e_A          132 LYSLFPDHHVKKYFD-QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG  210 (297)
T ss_dssp             EEEECTTSCEEEEEE-EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS
T ss_pred             EEEEECCCCEEEEee-ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC
Confidence            665543222222211 1123578999999987755543 3  4555542  221     222333444567889999999


Q ss_pred             ceEEEeecCCeEEEee
Q psy12456        146 HYLASSSMDRTLKLYS  161 (162)
Q Consensus       146 ~~l~s~s~D~~i~iw~  161 (162)
                      ++.++...++.|..||
T Consensus       211 ~lwva~~~~~~v~~~d  226 (297)
T 3g4e_A          211 KLWVACYNGGRVIRLD  226 (297)
T ss_dssp             CEEEEEETTTEEEEEC
T ss_pred             CEEEEEcCCCEEEEEc
Confidence            9888877778888886

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.06  E-value=9.4e-09  Score=74.33  Aligned_cols=155  Identities=10%  Similarity=0.144  Sum_probs=103.5

Q ss_pred             CCcEEEEEeCCCCcEEEEeeC-----CCcEEEEECCCCeeeeeccCC------CCCEEEEEEccCC-CEEEEEe---CCC
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTS-----DSQVQIWDLKKQKNVTDFQLD------AGPIQALSFSENG-YYLATAA---DEN   72 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~-----dg~i~~wd~~~~~~~~~~~~~------~~~v~~i~~~~~~-~~l~s~~---~d~   72 (162)
                      -..+..++++|+|+++++-..     ++.|.+||+++++.+..+...      ......+++++++ ..+++..   .++
T Consensus        66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~  145 (343)
T 2qe8_A           66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA  145 (343)
T ss_dssp             CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred             eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence            457899999999998876544     578999999998877666532      2346789999864 4445554   678


Q ss_pred             eEEEEEcccCcceeEEeeC----------------------------CCCCeeEEEECCCCCEEEEeccc-EEEEEeCCc
Q psy12456         73 CVKLWDLRKLKNFKTLQLD----------------------------PNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQW  123 (162)
Q Consensus        73 ~v~~wd~~~~~~~~~~~~~----------------------------~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~  123 (162)
                      .|.+||+.+.+.......+                            ....+..++|+|+++.+..+... .++|.+...
T Consensus       146 ~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~  225 (343)
T 2qe8_A          146 ALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSA  225 (343)
T ss_dssp             EEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHH
T ss_pred             eEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHH
Confidence            9999998754432221110                            00125779999999887776554 356554211


Q ss_pred             e----------EEE--EeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        124 Q----------ELA--MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       124 ~----------~~~--~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .          ...  ...++.....++++++++.++++...++.|.+||.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          226 DLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             HHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             HhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            0          000  11123334567899999999999888999999973

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.03  E-value=8.1e-08  Score=69.39  Aligned_cols=146  Identities=16%  Similarity=0.178  Sum_probs=92.3

Q ss_pred             CcEEEEEeCCCCcEEEEee--CCCcEEEEECCCCeeeeecc-------CCCCCEEEEEEccCCCEEEEEeC-----CCeE
Q psy12456          9 PTLTTAQLHPDGLIFGIGT--SDSQVQIWDLKKQKNVTDFQ-------LDAGPIQALSFSENGYYLATAAD-----ENCV   74 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~--~dg~i~~wd~~~~~~~~~~~-------~~~~~v~~i~~~~~~~~l~s~~~-----d~~v   74 (162)
                      ...+.++++|+|+++++..  .++.++||.+++++. ..|.       .+...+..++++++++++++-..     +..|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            4678899999999998853  234356665554543 3232       23457899999999876665443     5789


Q ss_pred             EEEEcccCcceeEEeeCC-----CCCeeEEEECCCCCEE-EEec---cc--EEEEEeCCceEEEEeecCc----------
Q psy12456         75 KLWDLRKLKNFKTLQLDP-----NYEIRDLCFDQSGTYM-AVAG---TD--VRVFLCKQWQELAMFNEHT----------  133 (162)
Q Consensus        75 ~~wd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~-~~~~---~~--~~i~~~~~~~~~~~~~~h~----------  133 (162)
                      .+||+.+.+.+..+....     ...+..+++++++..+ ++..   .+  +.+++....+..+.+..|.          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            999998766555554321     1235789999764343 4432   23  5566655444433332221          


Q ss_pred             -------------------ccEEEEEECCCCceEEEeecCC
Q psy12456        134 -------------------AMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus       134 -------------------~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                                         ..+..++|+|+++.|..+..++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~  216 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS  216 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence                               2368899999998777666555

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.02  E-value=1.1e-07  Score=70.44  Aligned_cols=152  Identities=9%  Similarity=0.073  Sum_probs=98.5

Q ss_pred             CCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeee----ccCCCCC--EEEEEEccC-CCEEEEEeCCCeEEEEEc
Q psy12456          8 GPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTD----FQLDAGP--IQALSFSEN-GYYLATAADENCVKLWDL   79 (162)
Q Consensus         8 ~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~----~~~~~~~--v~~i~~~~~-~~~l~s~~~d~~v~~wd~   79 (162)
                      ...+..++++| +|.+++ ...++.|+.||..++.....    ...+...  ...++|+|+ +.++++-..++.|..|+.
T Consensus       218 ~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~  296 (409)
T 3hrp_A          218 SGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP  296 (409)
T ss_dssp             CSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred             cCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence            44567789999 566555 66788999999987653221    2222222  238999995 666666667889999987


Q ss_pred             ccCcceeEEeeCC--------------CCCeeEEEECCCCCEEEEec-ccEEEEEeC-CceEEEEeecC-----------
Q psy12456         80 RKLKNFKTLQLDP--------------NYEIRDLCFDQSGTYMAVAG-TDVRVFLCK-QWQELAMFNEH-----------  132 (162)
Q Consensus        80 ~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~-~~~~~~~~~~h-----------  132 (162)
                      ...  ...+....              -.....++++|+|.+.++-. .+.+|..+. ....+..+.++           
T Consensus       297 ~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~  374 (409)
T 3hrp_A          297 DGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTP  374 (409)
T ss_dssp             TCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBST
T ss_pred             CCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCCh
Confidence            532  22222211              12367899999998766655 554444433 22234444433           


Q ss_pred             ----cccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        133 ----TAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       133 ----~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                          -....+++++|++.++++-..++.|+.+++
T Consensus       375 ~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          375 LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                245889999999999998888888887753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.02  E-value=2.6e-08  Score=78.93  Aligned_cols=151  Identities=14%  Similarity=0.064  Sum_probs=97.4

Q ss_pred             cEEEEEeCCCCcEEEEeeCCC-----cEEEEECCCC--eeeeeccCCCCCEEEEEEccCCCEEEEEeCC----CeEEEEE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDS-----QVQIWDLKKQ--KNVTDFQLDAGPIQALSFSENGYYLATAADE----NCVKLWD   78 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg-----~i~~wd~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----~~v~~wd   78 (162)
                      .+..+.++|||++++..+.++     .|.+||+.++  +....+..+...+... ++|++..|+..+.+    +.|.+||
T Consensus       269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d  347 (741)
T 1yr2_A          269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVD  347 (741)
T ss_dssp             CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence            478899999999888877554     8999999876  3144454444444444 34888888877653    4599999


Q ss_pred             cccCc-ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeC-CceEEEEeec-CcccEEEEEECCCCceEE-E--
Q psy12456         79 LRKLK-NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCK-QWQELAMFNE-HTAMVTGVRFGTHAHYLA-S--  150 (162)
Q Consensus        79 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~-~~~~~~~~~~-h~~~v~~~~~s~~~~~l~-s--  150 (162)
                      +.+.. ....+..+....+..++++ ++.++++...+  .+++... ..+....+.. +...+..+.++|+++.++ +  
T Consensus       348 ~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s  426 (741)
T 1yr2_A          348 LSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFS  426 (741)
T ss_dssp             CSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred             CCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence            87642 2333333334446677776 55566666555  4566554 3444555553 366788999999987655 2  


Q ss_pred             -eecCCeEEEeeC
Q psy12456        151 -SSMDRTLKLYSL  162 (162)
Q Consensus       151 -~s~D~~i~iw~~  162 (162)
                       ....+++..||+
T Consensus       427 s~~~P~~i~~~d~  439 (741)
T 1yr2_A          427 SFTQPATVLALDP  439 (741)
T ss_dssp             ETTEEEEEEEEET
T ss_pred             CCCCCCEEEEEEC
Confidence             233467888874

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.02  E-value=4.2e-08  Score=72.79  Aligned_cols=147  Identities=10%  Similarity=0.039  Sum_probs=94.2

Q ss_pred             EEeCCCCcEEEEeeCCC--cEEEEECCCCeeeeec----cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456         14 AQLHPDGLIFGIGTSDS--QVQIWDLKKQKNVTDF----QLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~dg--~i~~wd~~~~~~~~~~----~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      ++++|+++.++++..++  .|.++|...+.....+    ........+++++|++..|..+..++.|..||..+... ..
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~  254 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TL  254 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EE
Confidence            78999999888887766  7888887765443333    21334567899999545555577788999999875442 22


Q ss_pred             E----eeCCC-C-CeeEEEECCC-CCEEEEecccEEEEEeCCceEEEEeecCc---------------ccEEEEEECCCC
Q psy12456         88 L----QLDPN-Y-EIRDLCFDQS-GTYMAVAGTDVRVFLCKQWQELAMFNEHT---------------AMVTGVRFGTHA  145 (162)
Q Consensus        88 ~----~~~~~-~-~v~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~h~---------------~~v~~~~~s~~~  145 (162)
                      +    ..... . +...++|+|+ +.+.++-..+.+|+.+.....+..+.++.               .....++++|++
T Consensus       255 ~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          255 IKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             EEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             EecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence            2    11111 1 1128999995 55544444444555443322233332221               347899999999


Q ss_pred             ceEEEee-cCCeEEEee
Q psy12456        146 HYLASSS-MDRTLKLYS  161 (162)
Q Consensus       146 ~~l~s~s-~D~~i~iw~  161 (162)
                      +++++-+ .++.|+.|+
T Consensus       335 ~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             CEEEEETTTTCEEEEEE
T ss_pred             CEEEEeCCCCCEEEEEE
Confidence            9888887 888999987

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.01  E-value=1.5e-07  Score=68.98  Aligned_cols=140  Identities=11%  Similarity=-0.013  Sum_probs=95.3

Q ss_pred             EeCCCCcEEEEeeC--CC---cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe----------CCCeEEEEEc
Q psy12456         15 QLHPDGLIFGIGTS--DS---QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA----------DENCVKLWDL   79 (162)
Q Consensus        15 ~~~~~g~~~a~g~~--dg---~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~d~~v~~wd~   79 (162)
                      ...|++.++.+...  ..   .|.++|..+++.+..+.....+  .++++||++++..++          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34578887666553  22   8899999999998888765555  899999999998886          3678999999


Q ss_pred             ccCcceeEEeeC-C-----CCCeeEEEECCCCCEEEEecc---c-EEEEEeCCceEEEE-eecCcccEEEEEECCCC-ce
Q psy12456         80 RKLKNFKTLQLD-P-----NYEIRDLCFDQSGTYMAVAGT---D-VRVFLCKQWQELAM-FNEHTAMVTGVRFGTHA-HY  147 (162)
Q Consensus        80 ~~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~~~~~~---~-~~i~~~~~~~~~~~-~~~h~~~v~~~~~s~~~-~~  147 (162)
                      .+.+.+...... .     ......+.|+|+|+++.+++.   + +.+++ .+.+.+.. +.-. ..   +.+.|++ +.
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~---~~~~~~~~~~  179 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TC---YHIHPGAPST  179 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ce---EEEEeCCCce
Confidence            877766655432 0     112457899999999988753   2 67777 77766655 4321 11   2233333 34


Q ss_pred             EEEeecCCeEEEee
Q psy12456        148 LASSSMDRTLKLYS  161 (162)
Q Consensus       148 l~s~s~D~~i~iw~  161 (162)
                      +++.+.|+.+.+++
T Consensus       180 ~~~~~~dg~~~~vd  193 (373)
T 2mad_H          180 FYLLCAQGGLAKTD  193 (373)
T ss_pred             EEEEcCCCCEEEEE
Confidence            45566677766665

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.97  E-value=6.5e-08  Score=68.66  Aligned_cols=146  Identities=17%  Similarity=0.111  Sum_probs=92.9

Q ss_pred             cEEEEEeCCCCcEEEE----eeC-------------CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC-
Q psy12456         10 TLTTAQLHPDGLIFGI----GTS-------------DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE-   71 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~----g~~-------------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-   71 (162)
                      .++.+++.|+|+++++    |..             .+.|..+|.++++.....  .......++|+|+++.|..+... 
T Consensus       132 ~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~  209 (305)
T 3dr2_A          132 SPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPE  209 (305)
T ss_dssp             CCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC
T ss_pred             CCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCC
Confidence            3567899999999886    442             256777887666543322  33456789999999987777665 


Q ss_pred             -----CeEEEEEcccCcc--eeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEeecCcccEEEEEECCC
Q psy12456         72 -----NCVKLWDLRKLKN--FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTH  144 (162)
Q Consensus        72 -----~~v~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~  144 (162)
                           +.|..||+.....  ...+..........+++.++|.+.++....+.+++. ..+.+..+..+. .+..+.|+|+
T Consensus       210 ~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d  287 (305)
T 3dr2_A          210 QGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGVCVFDS-DGQLLGHIPTPG-TASNCTFDQA  287 (305)
T ss_dssp             ---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEEEEECT-TSCEEEEEECSS-CCCEEEECTT
T ss_pred             cCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCcEEEECC-CCCEEEEEECCC-ceeEEEEeCC
Confidence                 6899999864321  111111112234678899999865554333555443 345555665554 4888999998


Q ss_pred             CceEEEeecCCeEEE
Q psy12456        145 AHYLASSSMDRTLKL  159 (162)
Q Consensus       145 ~~~l~s~s~D~~i~i  159 (162)
                      ++.|..++.++..++
T Consensus       288 ~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          288 QQRLFITGGPCLWML  302 (305)
T ss_dssp             SCEEEEEETTEEEEE
T ss_pred             CCEEEEEcCCeEEEE
Confidence            887766666654443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.96  E-value=1.3e-07  Score=70.61  Aligned_cols=150  Identities=17%  Similarity=0.266  Sum_probs=99.9

Q ss_pred             EEEEeCCCCcEEEEeeCC------CcEEEEECCCCeeeeeccCCCCC---EEEEEEccCCCEEEEEe-------------
Q psy12456         12 TTAQLHPDGLIFGIGTSD------SQVQIWDLKKQKNVTDFQLDAGP---IQALSFSENGYYLATAA-------------   69 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~d------g~i~~wd~~~~~~~~~~~~~~~~---v~~i~~~~~~~~l~s~~-------------   69 (162)
                      -.+...|+| ++++...+      |.+.++|.++.+.+.+++....+   -..+.|+|+++.+++..             
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~  219 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKL  219 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCT
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccch
Confidence            345678999 77666666      78999999999999988743222   23477899999888885             


Q ss_pred             ------CCCeEEEEEcccCcceeEEeeCCC-CCeeEEEE--CCCCCEEEEecc-----c---EEEEEeCC--ceEEEEe-
Q psy12456         70 ------DENCVKLWDLRKLKNFKTLQLDPN-YEIRDLCF--DQSGTYMAVAGT-----D---VRVFLCKQ--WQELAMF-  129 (162)
Q Consensus        70 ------~d~~v~~wd~~~~~~~~~~~~~~~-~~v~~~~~--~~~~~~~~~~~~-----~---~~i~~~~~--~~~~~~~-  129 (162)
                            ...+|.+||+.+.+..+++..... ...+.+.|  +|+++++.++..     .   +.++.++.  ++..+.+ 
T Consensus       220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId  299 (462)
T 2ece_A          220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE  299 (462)
T ss_dssp             TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred             hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence                  367899999988766666665311 22445545  999988777664     2   33333322  2222211 


Q ss_pred             -ecC----------------cccEEEEEECCCCceEEEe-ecCCeEEEeeC
Q psy12456        130 -NEH----------------TAMVTGVRFGTHAHYLASS-SMDRTLKLYSL  162 (162)
Q Consensus       130 -~~h----------------~~~v~~~~~s~~~~~l~s~-s~D~~i~iw~~  162 (162)
                       ...                ......+.+|||+++|-.+ -..+.|.+||+
T Consensus       300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred             CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence             110                1346789999999988544 44678999885

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.93  E-value=4e-08  Score=73.22  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=58.3

Q ss_pred             EEEeCCCCcEEEEee----------CCCcEEEEECCCCeeeeeccCC-------CCCEEEEEEccCCCEEEEEeC--CCe
Q psy12456         13 TAQLHPDGLIFGIGT----------SDSQVQIWDLKKQKNVTDFQLD-------AGPIQALSFSENGYYLATAAD--ENC   73 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~----------~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~s~~~--d~~   73 (162)
                      .++++|||+.+.++.          .++.|.++|..+.+.+.++...       ...-..++++||++++..++.  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            689999999887776          3678999999999988877532       122346799999999998874  578


Q ss_pred             EEEEEcccCcceeE
Q psy12456         74 VKLWDLRKLKNFKT   87 (162)
Q Consensus        74 v~~wd~~~~~~~~~   87 (162)
                      |.+.|+.+.+.+..
T Consensus       202 VsVID~~t~kvv~~  215 (426)
T 3c75_H          202 VGVVDLEGKTFDRM  215 (426)
T ss_dssp             EEEEETTTTEEEEE
T ss_pred             EEEEECCCCeEEEE
Confidence            99999987665433

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.92  E-value=8.4e-07  Score=63.62  Aligned_cols=149  Identities=11%  Similarity=0.005  Sum_probs=92.2

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC---C-CCCEEEEEEccCCCEEEEEeCC----CeEEEEEcc
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL---D-AGPIQALSFSENGYYLATAADE----NCVKLWDLR   80 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~---~-~~~v~~i~~~~~~~~l~s~~~d----~~v~~wd~~   80 (162)
                      ..+.+++++|+|+++++. .+ .|.+||.++++.......   . ...+..++++|+|+++++...+    ....+|.+.
T Consensus        90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            468889999999987754 44 499999987764332221   1 2357899999999877655422    223444443


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEecc-c--EEEEEeC--Cc-e-----EEEEeecCcccEEEEEECCCCceEE
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-D--VRVFLCK--QW-Q-----ELAMFNEHTAMVTGVRFGTHAHYLA  149 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~i~~~~--~~-~-----~~~~~~~h~~~v~~~~~s~~~~~l~  149 (162)
                      +.+ ...+.. .......++|+|+++.+..+.. +  +.+++..  .. .     .+..+........++.+.+++.+++
T Consensus       168 ~g~-~~~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwv  245 (326)
T 2ghs_A          168 KGK-VTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  245 (326)
T ss_dssp             TTE-EEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             CCc-EEEeeC-CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEE
Confidence            322 222211 1123578999999987655543 3  5555543  22 1     2222333445678899999998887


Q ss_pred             EeecCCeEEEee
Q psy12456        150 SSSMDRTLKLYS  161 (162)
Q Consensus       150 s~s~D~~i~iw~  161 (162)
                      +...++.|..|+
T Consensus       246 a~~~~~~v~~~d  257 (326)
T 2ghs_A          246 ARWGEGAVDRYD  257 (326)
T ss_dssp             EEETTTEEEEEC
T ss_pred             EEeCCCEEEEEC
Confidence            776677888876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.89  E-value=2.7e-10  Score=83.44  Aligned_cols=137  Identities=7%  Similarity=0.057  Sum_probs=68.4

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCee-
Q psy12456         19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIR-   97 (162)
Q Consensus        19 ~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~-   97 (162)
                      ++..+++++.||.|..||.++++.+..++.  +++.+..+..++..+++++.|+.|..||..+.+....+..+....+. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            567888999999999999999999888776  44544455567777888889999999999776654333321110010 


Q ss_pred             EEEECCCCCEEEEecccE--EEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         98 DLCFDQSGTYMAVAGTDV--RVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...+. .+..+++++.+.  ..++..+++.+-.+..+.    ...++|++..+..++.|+.++.||.
T Consensus        86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCS
T ss_pred             CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEEC
Confidence            11111 233455565554  444445555554444443    2345678888888999999999873

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.87  E-value=7.1e-08  Score=70.64  Aligned_cols=68  Identities=13%  Similarity=0.093  Sum_probs=53.8

Q ss_pred             EEEeCCCCcEEEEee----------CCCcEEEEECCCCeeeeeccCCC-------CCEEEEEEccCCCEEEEEeC--CCe
Q psy12456         13 TAQLHPDGLIFGIGT----------SDSQVQIWDLKKQKNVTDFQLDA-------GPIQALSFSENGYYLATAAD--ENC   73 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~----------~dg~i~~wd~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~s~~~--d~~   73 (162)
                      .++++|||+.+.++.          .++.|.+||+.+++.+.++....       ..-..++++|||++++.++.  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            689999999888876          36889999999999998886431       12346899999999998874  456


Q ss_pred             EEE--EEcc
Q psy12456         74 VKL--WDLR   80 (162)
Q Consensus        74 v~~--wd~~   80 (162)
                      +.+  +|..
T Consensus       149 v~V~~iD~~  157 (368)
T 1mda_H          149 AGLSVPGAS  157 (368)
T ss_dssp             EEEEETTTE
T ss_pred             EEEEEEchh
Confidence            888  8774

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.85  E-value=2.5e-07  Score=69.01  Aligned_cols=112  Identities=14%  Similarity=0.059  Sum_probs=84.1

Q ss_pred             CCCcEEEEeeC-C----CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe----------CCCeEEEEEcccC
Q psy12456         18 PDGLIFGIGTS-D----SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA----------DENCVKLWDLRKL   82 (162)
Q Consensus        18 ~~g~~~a~g~~-d----g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~d~~v~~wd~~~~   82 (162)
                      |+++.+.+... +    +.|.++|..+.+.+.++.....|  .++++||++++..++          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            46665544444 2    69999999999999999866667  899999999888876          4678999999988


Q ss_pred             cceeEEeeC-C-----CCCeeEEEECCCCCEEEEecc----cEEEEEeCCceEEEEeec
Q psy12456         83 KNFKTLQLD-P-----NYEIRDLCFDQSGTYMAVAGT----DVRVFLCKQWQELAMFNE  131 (162)
Q Consensus        83 ~~~~~~~~~-~-----~~~v~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~  131 (162)
                      +.+..+... .     ......+.|+|+|+++.+++.    .+.+++..+.+.+.++.-
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            877766543 1     113467899999999888753    267777777777766653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.70  E-value=2.3e-07  Score=68.26  Aligned_cols=144  Identities=14%  Similarity=0.121  Sum_probs=87.3

Q ss_pred             EEeCCCCcEEEEee----------CCCcEEEEECCCCeeeeeccCCC-------CCEEEEEEccCCCEEEEEeC--CCeE
Q psy12456         14 AQLHPDGLIFGIGT----------SDSQVQIWDLKKQKNVTDFQLDA-------GPIQALSFSENGYYLATAAD--ENCV   74 (162)
Q Consensus        14 ~~~~~~g~~~a~g~----------~dg~i~~wd~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~s~~~--d~~v   74 (162)
                      ++++|||+.+.++.          .++.|.+||..+.+.+.++....       ..-..++|+|||+++..++.  ++.|
T Consensus        83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V  162 (386)
T 3sjl_D           83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV  162 (386)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred             EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence            89999999887765          36789999999999888875321       12346899999999888874  6899


Q ss_pred             EEEEcccCcceeEEeeCCCCCe------eEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccEE-EEEE-CCCC
Q psy12456         75 KLWDLRKLKNFKTLQLDPNYEI------RDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVT-GVRF-GTHA  145 (162)
Q Consensus        75 ~~wd~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~-~~~~-s~~~  145 (162)
                      .++|+.+.+.+.++.......+      .-++.+++|+++...... .++.....    ..+..-..++. ...| .+++
T Consensus       163 sVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~----~~~~~~~~~~~~~~~~~~~dG  238 (386)
T 3sjl_D          163 GVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT----EVFHPEDEFLINHPAYSQKAG  238 (386)
T ss_dssp             EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC----CCCSCTTSCBCSCCEEETTTT
T ss_pred             EEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeec----ceeccccccccccceeEcCCC
Confidence            9999998877666643210000      012455666655554432 22211000    11111112222 2355 4677


Q ss_pred             ceEEEeecCCeEEEeeC
Q psy12456        146 HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       146 ~~l~s~s~D~~i~iw~~  162 (162)
                      +++. .+.++.+.+.|+
T Consensus       239 ~~~~-vs~~g~V~v~d~  254 (386)
T 3sjl_D          239 RLVW-PTYTGKIHQIDL  254 (386)
T ss_dssp             EEEE-EBTTSEEEEEEC
T ss_pred             cEEE-EeCCCEEEEEEC
Confidence            6544 344677877763

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.68  E-value=1.1e-05  Score=56.39  Aligned_cols=145  Identities=12%  Similarity=0.057  Sum_probs=94.0

Q ss_pred             cEEEEEeCCCCcEEEEeeC--CCcEEEEECCCCeeeeeccCCCC-CEEEEEEccCCCEEEEE-eCCCeEEEEEcccCcce
Q psy12456         10 TLTTAQLHPDGLIFGIGTS--DSQVQIWDLKKQKNVTDFQLDAG-PIQALSFSENGYYLATA-ADENCVKLWDLRKLKNF   85 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~--dg~i~~wd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~s~-~~d~~v~~wd~~~~~~~   85 (162)
                      ....++++|++.++++.+.  ++.|+++|+.+++.+..+..... ....+++.  +..|... -.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            3678999998877766553  68999999999999888764332 22345554  4444444 46789999999988877


Q ss_pred             eEEeeC-CCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeec--Cc---ccEEEEEECCCCceEEEeecCCeE
Q psy12456         86 KTLQLD-PNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE--HT---AMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~--h~---~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                      .++... +.    ...++++++.+.++...  +.+++..+.+.+..+.-  +.   ..++.+.|. +++.+++...++.|
T Consensus       100 ~~i~~g~~~----g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V  174 (266)
T 2iwa_A          100 KNFTHQMKD----GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI  174 (266)
T ss_dssp             EEEECCSSS----CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEEECCCCC----eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence            777654 22    23344566555554433  55555556666655442  11   236788887 67777766566777


Q ss_pred             EEee
Q psy12456        158 KLYS  161 (162)
Q Consensus       158 ~iw~  161 (162)
                      .+-|
T Consensus       175 ~vID  178 (266)
T 2iwa_A          175 ARIS  178 (266)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.67  E-value=2.8e-06  Score=65.44  Aligned_cols=151  Identities=12%  Similarity=0.053  Sum_probs=105.4

Q ss_pred             CCcEEEEEe-C-CCCcEEEEee------------------CCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEE
Q psy12456          8 GPTLTTAQL-H-PDGLIFGIGT------------------SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT   67 (162)
Q Consensus         8 ~~~v~~~~~-~-~~g~~~a~g~------------------~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s   67 (162)
                      +...-.+++ + |+++++.+++                  .++.+.+.|..+.+.+..+..... -..++++|+|+++++
T Consensus       133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~-pd~~~~spdGk~~~v  211 (595)
T 1fwx_A          133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN-LDNCDADYEGKWAFS  211 (595)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC-CCCEEECSSSSEEEE
T ss_pred             CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC-ccceEECCCCCEEEE
Confidence            445667776 5 9999888874                  356799999999988887764333 356789999999998


Q ss_pred             EeCCC--------------------------------------eEEEEEccc--Ccc-eeEEeeCCCCCeeEEEECCCCC
Q psy12456         68 AADEN--------------------------------------CVKLWDLRK--LKN-FKTLQLDPNYEIRDLCFDQSGT  106 (162)
Q Consensus        68 ~~~d~--------------------------------------~v~~wd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~  106 (162)
                      .+.+.                                      .|.+.|.++  .+. +......  ....++.++|||+
T Consensus       212 t~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg--~~PhGv~~sPDGk  289 (595)
T 1fwx_A          212 TSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA--NNPHGCNMAPDKK  289 (595)
T ss_dssp             EESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE--SSCCCEEECTTSS
T ss_pred             EecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC--CCceEEEEcCCCC
Confidence            88543                                      366666665  222 2233221  2357899999999


Q ss_pred             EEEEeccc---EEEEEeCCce------------EEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        107 YMAVAGTD---VRVFLCKQWQ------------ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       107 ~~~~~~~~---~~i~~~~~~~------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ++.+++..   +.+++..+.+            .+....- .....+++|+|+|...++.-.|++|..||+
T Consensus       290 ~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          290 HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             EEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             EEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence            98887643   7777776442            2333332 234788999999966678888999999984

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.55  E-value=3e-06  Score=67.40  Aligned_cols=143  Identities=8%  Similarity=0.056  Sum_probs=83.5

Q ss_pred             CcEEEEEeC-CCCcEEEEeeC-C----CcEEEEECCCC-eeeee-ccCCCCCEEEEEEccCCCEEEEEeCC-----CeEE
Q psy12456          9 PTLTTAQLH-PDGLIFGIGTS-D----SQVQIWDLKKQ-KNVTD-FQLDAGPIQALSFSENGYYLATAADE-----NCVK   75 (162)
Q Consensus         9 ~~v~~~~~~-~~g~~~a~g~~-d----g~i~~wd~~~~-~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~d-----~~v~   75 (162)
                      ..+...+|+ |||+++|.+.. +    .+|+++|+.++ +.+.. +.   .....++|+||++.|+....|     ..|.
T Consensus       174 ~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          174 CDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             CEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            367889999 99998886544 2    24999999988 63211 11   112357899999888887765     2577


Q ss_pred             EEEcccCcce--eEEeeCCCCCeeEEEECCCCCEEEEecc---cEEEE--EeCCc--eE--EEEeecCcccEEEEEECCC
Q psy12456         76 LWDLRKLKNF--KTLQLDPNYEIRDLCFDQSGTYMAVAGT---DVRVF--LCKQW--QE--LAMFNEHTAMVTGVRFGTH  144 (162)
Q Consensus        76 ~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~i~--~~~~~--~~--~~~~~~h~~~v~~~~~s~~  144 (162)
                      .+++.+.+..  ..+..........+.|+|+|++|+....   ...+|  +....  +.  .............+.|+..
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g  330 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT  330 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence            7887654322  2222222223567889999998887652   23444  44332  12  2122333444555555444


Q ss_pred             CceEEEeecC
Q psy12456        145 AHYLASSSMD  154 (162)
Q Consensus       145 ~~~l~s~s~D  154 (162)
                      +.+++....+
T Consensus       331 ~~l~~~t~~~  340 (751)
T 2xe4_A          331 SHLVILTNEG  340 (751)
T ss_dssp             TEEEEEECTT
T ss_pred             CEEEEEeCCC
Confidence            4444444443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.53  E-value=1.5e-05  Score=55.46  Aligned_cols=146  Identities=10%  Similarity=0.162  Sum_probs=93.5

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCC--cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcccCcce
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDS--QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA-DENCVKLWDLRKLKNF   85 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d~~v~~wd~~~~~~~   85 (162)
                      .....+.|+ ++.++.+++.+|  .|+.+|+++++.+..+...... ....+.+++..|.... .++.+.+||..+.+.+
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~-FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY-FGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC-CEEEEEEETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc-ceeEEEEeCCEEEEEEeeCCEEEEEECccCcEE
Confidence            345778888 677777777776  8999999999999888765433 3333333444555554 5789999999998888


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeec--Cc---ccEEEEEECCCCceEEEeecCCeEE
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE--HT---AMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~--h~---~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      .++.....  -..++  +++..+..++..  +.+++..+.+.+..+.-  ..   ..++.+.|. +++.++..-.+..|.
T Consensus       121 ~ti~~~~e--G~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~  195 (262)
T 3nol_A          121 RSFNYDGE--GWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV  195 (262)
T ss_dssp             EEEECSSC--CCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EEEECCCC--ceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence            88776432  23444  455555554434  55555555666655432  12   335567776 677776665566676


Q ss_pred             Eee
Q psy12456        159 LYS  161 (162)
Q Consensus       159 iw~  161 (162)
                      +.|
T Consensus       196 vID  198 (262)
T 3nol_A          196 RID  198 (262)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.49  E-value=1.7e-05  Score=62.54  Aligned_cols=148  Identities=14%  Similarity=0.096  Sum_probs=88.1

Q ss_pred             cEEEEEeCCCCcEEEEeeC----CCcEEEEECCCCe-eeeeccCCCCCEEEEEEccCCCEEE-EEeCC---CeEEEEEcc
Q psy12456         10 TLTTAQLHPDGLIFGIGTS----DSQVQIWDLKKQK-NVTDFQLDAGPIQALSFSENGYYLA-TAADE---NCVKLWDLR   80 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~----dg~i~~wd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d---~~v~~wd~~   80 (162)
                      ....+.++|||++++....    +..+.++|+++++ ....+..+....... +++++..|+ ..+.+   +.|..+|+.
T Consensus       235 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~  313 (693)
T 3iuj_A          235 RYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAA  313 (693)
T ss_dssp             SEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETT
T ss_pred             EEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCC
Confidence            3577899999998855433    3589999997763 344455554444443 566555544 44443   578889987


Q ss_pred             cCcc--eeEEeeCCCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEEee-cCcccEEEEEECCCCceEEEee
Q psy12456         81 KLKN--FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAMFN-EHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        81 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                      +...  ...+..+... +.  .|++++..|+....+     +.+++... .....+. .....+..+.++|+++.++...
T Consensus       314 ~~~~~~~~~l~~~~~~-~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~  389 (693)
T 3iuj_A          314 NPGPAHWRDLIPERQQ-VL--TVHSGSGYLFAEYMVDATARVEQFDYEG-KRVREVALPGLGSVSGFNGKHDDPALYFGF  389 (693)
T ss_dssp             SCCGGGCEEEECCCSS-CE--EEEEETTEEEEEEEETTEEEEEEECTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEEE
T ss_pred             CCCccccEEEecCCCC-EE--EEEEECCEEEEEEEECCeeEEEEEECCC-CeeEEeecCCCceEEeeecCCCCCEEEEEe
Confidence            6443  2344444333 33  788888887776543     33443332 2333333 3445677888888887665443


Q ss_pred             cC----CeEEEeeC
Q psy12456        153 MD----RTLKLYSL  162 (162)
Q Consensus       153 ~D----~~i~iw~~  162 (162)
                      .+    +++..||+
T Consensus       390 ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          390 ENYAQPPTLYRFEP  403 (693)
T ss_dssp             ECSSSCCEEEEECT
T ss_pred             cCCCCCCEEEEEEC
Confidence            33    56777663

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.49  E-value=1.9e-05  Score=55.19  Aligned_cols=138  Identities=12%  Similarity=0.103  Sum_probs=95.8

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCC-CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCC----CC
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLD-AGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDP----NY   94 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~----~~   94 (162)
                      +.++++.-.++.+.++|..+.+.+.+++.. ...   ..+++|+..++.+..++.|.+.|..+.+.........    ..
T Consensus        76 ~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~  152 (266)
T 2iwa_A           76 EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVI  152 (266)
T ss_dssp             TEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             CEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccc
Confidence            456666777899999999999999888643 222   3466688777777788999999998877666655321    11


Q ss_pred             CeeEEEECCCCCEEEEec--ccEEEEEeCCceEEEEeecC-------------cccEEEEEECCCCc-eEEEeecCCeEE
Q psy12456         95 EIRDLCFDQSGTYMAVAG--TDVRVFLCKQWQELAMFNEH-------------TAMVTGVRFGTHAH-YLASSSMDRTLK  158 (162)
Q Consensus        95 ~v~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~h-------------~~~v~~~~~s~~~~-~l~s~s~D~~i~  158 (162)
                      .+..+.|. +++..+...  .++.+.+..+.+.+..+.-.             .....+++|+|+++ +++++....++.
T Consensus       153 ~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~  231 (266)
T 2iwa_A          153 RLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF  231 (266)
T ss_dssp             CEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             cceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence            25677777 665544442  23777777788777766531             13568999999875 667777777776


Q ss_pred             Eee
Q psy12456        159 LYS  161 (162)
Q Consensus       159 iw~  161 (162)
                      .-+
T Consensus       232 ~i~  234 (266)
T 2iwa_A          232 EIK  234 (266)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.44  E-value=1.7e-05  Score=55.28  Aligned_cols=145  Identities=8%  Similarity=0.021  Sum_probs=93.4

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCC-EEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP-IQALSFSENGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      .....+.|+ ++.++.+.+.+|.|+++|+++++.+..+ ..... -..+++..+ +.....-.++.+.+||..+.+.+.+
T Consensus        55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEE
Confidence            334677787 4678888888899999999999988877 44322 123555433 3444445678999999999888888


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeec--Ccc---cEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE--HTA---MVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~--h~~---~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      +.....  -..++  ++++.+..+...  +.+++..+.+.+..+.-  +..   .++.+.|. +++.++..-.+..|.+-
T Consensus       132 i~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI  206 (268)
T 3nok_A          132 TRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI  206 (268)
T ss_dssp             EECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred             EeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence            776432  23444  456665555444  55555556666655432  222   35677776 67777666556666655


Q ss_pred             e
Q psy12456        161 S  161 (162)
Q Consensus       161 ~  161 (162)
                      |
T Consensus       207 D  207 (268)
T 3nok_A          207 D  207 (268)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.42  E-value=2.7e-05  Score=58.28  Aligned_cols=142  Identities=9%  Similarity=0.132  Sum_probs=95.2

Q ss_pred             CCCcEE-EEeeCCCcEEEEECCCC----eeeeecc-------CCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEc
Q psy12456         18 PDGLIF-GIGTSDSQVQIWDLKKQ----KNVTDFQ-------LDAGPIQALSFSENGYYLATAADE------NCVKLWDL   79 (162)
Q Consensus        18 ~~g~~~-a~g~~dg~i~~wd~~~~----~~~~~~~-------~~~~~v~~i~~~~~~~~l~s~~~d------~~v~~wd~   79 (162)
                      ++++++ +.|..++.|.++|+.+.    +.+..++       .....-..+...|++ .++++..+      +.+.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            666655 55666899999999755    5555552       111133567888999 77777666      78999999


Q ss_pred             ccCcceeEEeeCCCCC--eeEEEECCCCCEEEEec---------------------ccEEEEEeCCceEEEEeecC--cc
Q psy12456         80 RKLKNFKTLQLDPNYE--IRDLCFDQSGTYMAVAG---------------------TDVRVFLCKQWQELAMFNEH--TA  134 (162)
Q Consensus        80 ~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~---------------------~~~~i~~~~~~~~~~~~~~h--~~  134 (162)
                      .+.+.+.++.......  --++.|+|+++.+++..                     ..+.+|++.+.+.+.++.--  ..
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            9888777765332211  12467899999888884                     23788888877777666542  23


Q ss_pred             cEEEEEE--CCCCceEEEee------cCCeEEEe
Q psy12456        135 MVTGVRF--GTHAHYLASSS------MDRTLKLY  160 (162)
Q Consensus       135 ~v~~~~~--s~~~~~l~s~s------~D~~i~iw  160 (162)
                      ....+.|  +|+++++-.++      .+++|.+|
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~  285 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLW  285 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEE
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEE
Confidence            4556666  99998765544      55677654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.40  E-value=5.3e-06  Score=60.75  Aligned_cols=91  Identities=9%  Similarity=-0.094  Sum_probs=71.4

Q ss_pred             CcEEEEeeCCC----cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe----------CCCeEEEEEcccCcce
Q psy12456         20 GLIFGIGTSDS----QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA----------DENCVKLWDLRKLKNF   85 (162)
Q Consensus        20 g~~~a~g~~dg----~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~d~~v~~wd~~~~~~~   85 (162)
                      ...+++-..++    +|.++|..+++.+.++.....|  .++++||++++..++          .++.|.+||..+.+.+
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv  109 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI  109 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence            33555555455    7889999999999999866667  799999999888886          3688999999998888


Q ss_pred             eEEeeC--C----CCCeeEEEECCCCCEEEEec
Q psy12456         86 KTLQLD--P----NYEIRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        86 ~~~~~~--~----~~~v~~~~~~~~~~~~~~~~  112 (162)
                      .++...  .    ......+.++|+|+++.+++
T Consensus       110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan  142 (368)
T 1mda_H          110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFL  142 (368)
T ss_dssp             EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEE
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEc
Confidence            877653  1    01346789999999988875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.39  E-value=0.00016  Score=49.76  Aligned_cols=146  Identities=8%  Similarity=0.045  Sum_probs=90.7

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCC--cEEEEECCCCeeeeeccCCCCCE-EEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDS--QVQIWDLKKQKNVTDFQLDAGPI-QALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg--~i~~wd~~~~~~~~~~~~~~~~v-~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .....+.|++ +.++.+.+.+|  .|+.+|+++++.+........+. ..+++.. ++.....-.++.+.+||..+.+.+
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEE
Confidence            4567888987 66666666654  89999999999998887654332 2344432 333344446789999999998888


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeec--Cc---ccEEEEEECCCCceEEEeecCCeEE
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNE--HT---AMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~--h~---~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      .++.....  -..++  +++..+..+...  +.+++..+.+.++++.-  +.   ..++.+.+. +++.++..-.+..|.
T Consensus        99 ~ti~~~~~--Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~  173 (243)
T 3mbr_X           99 ARFRYPGE--GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA  173 (243)
T ss_dssp             EEEECSSC--CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             EEEeCCCC--ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence            88776432  24455  445444444333  55555556666655442  21   245666665 566666554455665


Q ss_pred             Eee
Q psy12456        159 LYS  161 (162)
Q Consensus       159 iw~  161 (162)
                      +-|
T Consensus       174 vID  176 (243)
T 3mbr_X          174 RID  176 (243)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            544

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.36  E-value=9.9e-06  Score=62.46  Aligned_cols=138  Identities=12%  Similarity=0.066  Sum_probs=90.2

Q ss_pred             EEEeCCCCcEEEEeeCCC--------------------------------------cEEEEECCC--Cee-eeeccCCCC
Q psy12456         13 TAQLHPDGLIFGIGTSDS--------------------------------------QVQIWDLKK--QKN-VTDFQLDAG   51 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg--------------------------------------~i~~wd~~~--~~~-~~~~~~~~~   51 (162)
                      -++++|+|+++.+.+.+.                                      .|.+.|.++  ++. +..+.....
T Consensus       199 ~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~  278 (595)
T 1fwx_A          199 NCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANN  278 (595)
T ss_dssp             CEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESS
T ss_pred             ceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCC
Confidence            367899999888888653                                      477888877  444 455543322


Q ss_pred             CEEEEEEccCCCEEEEEe-CCCeEEEEEcccCcc----------eeEEeeCCCCCeeEEEECCCCCEEEEec---ccEEE
Q psy12456         52 PIQALSFSENGYYLATAA-DENCVKLWDLRKLKN----------FKTLQLDPNYEIRDLCFDQSGTYMAVAG---TDVRV  117 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~~-~d~~v~~wd~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~i  117 (162)
                       ..++.++|||++++.++ .+.+|.++|+.+.+.          ....+.......+.++|+|+| ++.+..   ..+.+
T Consensus       279 -PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~k  356 (595)
T 1fwx_A          279 -PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK  356 (595)
T ss_dssp             -CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred             -ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEE
Confidence             34689999999887776 578999999986531          011122233457889999999 544433   23667


Q ss_pred             EEeCC----------ceEEEEeecCcccE-----EEEEECCCCceEEEee
Q psy12456        118 FLCKQ----------WQELAMFNEHTAMV-----TGVRFGTHAHYLASSS  152 (162)
Q Consensus       118 ~~~~~----------~~~~~~~~~h~~~v-----~~~~~s~~~~~l~s~s  152 (162)
                      |+...          .+.+..+.-|-.+-     .++.++|||++|.++.
T Consensus       357 wdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          357 WNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             EEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             EEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcC
Confidence            77654          45666666665432     1224579999998764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.32  E-value=0.00027  Score=50.25  Aligned_cols=148  Identities=14%  Similarity=0.136  Sum_probs=87.5

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC--------------------CCCCEEEEEEcc-CCCEEEEEe
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL--------------------DAGPIQALSFSE-NGYYLATAA   69 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~--------------------~~~~v~~i~~~~-~~~~l~s~~   69 (162)
                      ...+++.++|+++.++..++.|..||.++++.. .+..                    ......++++.+ +++ |..+.
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d   98 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD   98 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence            345778999997778888999999998765432 2210                    012468899997 554 55555


Q ss_pred             CCCeEEEEEcccCcceeEEe--eC--CCCCeeEEEECC-CCCEEEEecc-----------------cEEEEEeCC--ceE
Q psy12456         70 DENCVKLWDLRKLKNFKTLQ--LD--PNYEIRDLCFDQ-SGTYMAVAGT-----------------DVRVFLCKQ--WQE  125 (162)
Q Consensus        70 ~d~~v~~wd~~~~~~~~~~~--~~--~~~~v~~~~~~~-~~~~~~~~~~-----------------~~~i~~~~~--~~~  125 (162)
                      ..+.+..+|..+.+ +..+.  ..  .......+++.+ +|.+.++-..                 ...++.+..  .+ 
T Consensus        99 ~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-  176 (322)
T 2fp8_A           99 CYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE-  176 (322)
T ss_dssp             TTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-
T ss_pred             CCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-
Confidence            55557888865322 11111  00  112367899999 8876665422                 244544432  22 


Q ss_pred             EEEeecCcccEEEEEECCCCce-EEEeecCCeEEEeeC
Q psy12456        126 LAMFNEHTAMVTGVRFGTHAHY-LASSSMDRTLKLYSL  162 (162)
Q Consensus       126 ~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iw~~  162 (162)
                      +..+.........++|+|+++. +++-..++.|..|++
T Consensus       177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~  214 (322)
T 2fp8_A          177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWL  214 (322)
T ss_dssp             EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEES
T ss_pred             EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEEC
Confidence            2222111233567899999874 455566678877763

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.31  E-value=0.00013  Score=57.69  Aligned_cols=74  Identities=12%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             EEEeCCCCcEEEEeeCCCc-------------------EEEEECCCCeeeeeccC--CC-------CCEEEEEEccCCC-
Q psy12456         13 TAQLHPDGLIFGIGTSDSQ-------------------VQIWDLKKQKNVTDFQL--DA-------GPIQALSFSENGY-   63 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~-------------------i~~wd~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~-   63 (162)
                      ...+.|++.++.+++.++.                   |..+|.++++.+..++.  |.       .+........+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5678898889999988864                   99999999998877754  22       1222223333554 


Q ss_pred             --EEEEEeCCCeEEEEEcccCccee
Q psy12456         64 --YLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus        64 --~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                        .++.++.+|.+.++|.++.+.+.
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~  343 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLS  343 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             EEEEEEECCCCeEEEEECCCCCEec
Confidence              78889999999999998877653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.31  E-value=0.00027  Score=48.86  Aligned_cols=152  Identities=8%  Similarity=0.086  Sum_probs=90.0

Q ss_pred             cEEEEEeCCC-CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEE-EEeCCCeEEEEEcccCcceeE
Q psy12456         10 TLTTAQLHPD-GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLA-TAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        10 ~v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      .+..++++|+ +.++.+-..++.|..+|++.+.....+.........+++++++..|. +-...+.|.++++..... ..
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~  115 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RV  115 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EE
Confidence            3468899985 55666666678999999976654333333334678999999755444 445567899999864222 22


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEec-c--cEEEEEeC-CceEEEEe-ecCcccEEEEEECCCCc-eEEEeecCCeEEEee
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAG-T--DVRVFLCK-QWQELAMF-NEHTAMVTGVRFGTHAH-YLASSSMDRTLKLYS  161 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~-~--~~~i~~~~-~~~~~~~~-~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iw~  161 (162)
                      +..........++++|++..+..+. .  ..+|+... .......+ ........+++++|++. .+++-...+.|..++
T Consensus       116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence            2211223468899999654443333 2  23443321 12222222 22334578899999765 446666677888776


Q ss_pred             C
Q psy12456        162 L  162 (162)
Q Consensus       162 ~  162 (162)
                      +
T Consensus       196 ~  196 (267)
T 1npe_A          196 P  196 (267)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.27  E-value=4.4e-08  Score=71.67  Aligned_cols=135  Identities=13%  Similarity=0.014  Sum_probs=61.1

Q ss_pred             eCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCC------CCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEe
Q psy12456         16 LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA------GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        16 ~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~------~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~   89 (162)
                      +.+++.++++++.||.++.||.++++.+..++.+.      .++    +. ++..+++++.|+.+..||.++.+..-.+.
T Consensus        45 ~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~  119 (369)
T 2hz6_A           45 THVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS  119 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSC----C------CCCCEEEEEEEEECCC---------
T ss_pred             eEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcEEEEec
Confidence            44677788888999999999998888766655431      121    11 34567788889999999998776544433


Q ss_pred             eCCCCCeeEEEECCCCCEEEEecccEEEEE--eCCceEEEEeecCcccEEEEEECCCC---ceEEEeecCCeEEEeeC
Q psy12456         90 LDPNYEIRDLCFDQSGTYMAVAGTDVRVFL--CKQWQELAMFNEHTAMVTGVRFGTHA---HYLASSSMDRTLKLYSL  162 (162)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~D~~i~iw~~  162 (162)
                      .+.     ...++|++..+.+++.+..++-  .++.+.+-.+..+.  .....+.++.   ..+..++.|+.+..||.
T Consensus       120 ~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          120 SAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             ------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             CCC-----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEEC
Confidence            221     1345567778888877655443  33333322222111  1122233321   45556788999988873

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.23  E-value=0.00045  Score=51.49  Aligned_cols=147  Identities=8%  Similarity=0.092  Sum_probs=84.6

Q ss_pred             cEEEEEeCCC--CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC-C----eEEEEEcccC
Q psy12456         10 TLTTAQLHPD--GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE-N----CVKLWDLRKL   82 (162)
Q Consensus        10 ~v~~~~~~~~--g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-~----~v~~wd~~~~   82 (162)
                      ....++++|+  +.++++-. .+.|+.+|++.++...... .......|++++++++|..+... +    .+...+. ..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~-~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGE-QHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEB-TEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeC-CCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            4467889983  55555444 4889999998765444333 34557899999999966666542 1    2333332 22


Q ss_pred             cce--eEEeeCCCCCeeEEEECC-CCCEEEEecccEEE--EEeCCceEEEEee-cCcccEEEEEECCCCc-eEEEeecCC
Q psy12456         83 KNF--KTLQLDPNYEIRDLCFDQ-SGTYMAVAGTDVRV--FLCKQWQELAMFN-EHTAMVTGVRFGTHAH-YLASSSMDR  155 (162)
Q Consensus        83 ~~~--~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i--~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~-~l~s~s~D~  155 (162)
                      ...  ..+..  ......++++| ++.+.++-..+.+|  +............ .....-..++|+|+++ ++++-...+
T Consensus       215 ~~~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~  292 (430)
T 3tc9_A          215 GFKVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQH  292 (430)
T ss_dssp             TSCSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred             ceeeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCC
Confidence            211  12211  12356788999 67665554344344  4433332212221 1223467899999998 556666677


Q ss_pred             eEEEee
Q psy12456        156 TLKLYS  161 (162)
Q Consensus       156 ~i~iw~  161 (162)
                      .|..++
T Consensus       293 ~I~~~~  298 (430)
T 3tc9_A          293 YILRSD  298 (430)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            787765

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.23  E-value=0.00014  Score=50.58  Aligned_cols=129  Identities=14%  Similarity=0.287  Sum_probs=85.3

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCC----CCC
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDP----NYE   95 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~----~~~   95 (162)
                      ++++.+.-.++.+.+||.++.+.+.+++.....   ..+++++..|+..+.+..|.++|..+.+.........    ...
T Consensus        97 ~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~  173 (262)
T 3nol_A           97 DKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPE  173 (262)
T ss_dssp             TEEEEEESSSSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCC
T ss_pred             CEEEEEEeeCCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccc
Confidence            455666667899999999999999988754322   3444677777777778899999998888766655421    122


Q ss_pred             eeEEEECCCCCEEEEecc--cEEEEEeCCceEEEEeecC------------cccEEEEEECCCCc-eEEEee
Q psy12456         96 IRDLCFDQSGTYMAVAGT--DVRVFLCKQWQELAMFNEH------------TAMVTGVRFGTHAH-YLASSS  152 (162)
Q Consensus        96 v~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~h------------~~~v~~~~~s~~~~-~l~s~s  152 (162)
                      ++.+.+. +|+..+..-.  .+.+.+.++.+.+..+.-.            ....++++|+|+++ ++++|-
T Consensus       174 lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          174 LNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            4557775 5655544422  2666666677666655421            13568999999765 445553

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.22  E-value=0.00018  Score=56.70  Aligned_cols=149  Identities=13%  Similarity=0.100  Sum_probs=95.8

Q ss_pred             EEEEeCCCCcEEEEeeCCC-------------------cEEEEECCCCeeeeeccC--CC--------CCEEEEEEccCC
Q psy12456         12 TTAQLHPDGLIFGIGTSDS-------------------QVQIWDLKKQKNVTDFQL--DA--------GPIQALSFSENG   62 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg-------------------~i~~wd~~~~~~~~~~~~--~~--------~~v~~i~~~~~~   62 (162)
                      ...++.|++.++..++.++                   .|..+|.++++.+..++.  |+        .++ -+....+|
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~-l~~~~~dG  324 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMI-LADIKIAG  324 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCE-EEEEEETT
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcE-EEecccCC
Confidence            3567889888888887764                   499999999998877653  21        233 23344467


Q ss_pred             ---CEEEEEeCCCeEEEEEcccCcceeEEeeCCCC----------Ce------------------------eEEEECCCC
Q psy12456         63 ---YYLATAADENCVKLWDLRKLKNFKTLQLDPNY----------EI------------------------RDLCFDQSG  105 (162)
Q Consensus        63 ---~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~----------~v------------------------~~~~~~~~~  105 (162)
                         ..++.++.++.+.++|.++.+.+-.....+..          ++                        ..++++|+.
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence               68899999999999999887765544322110          00                        146788887


Q ss_pred             CEEEEecc---------------------------------------------cEEEEEeCCceEEEEeecCcccEEEEE
Q psy12456        106 TYMAVAGT---------------------------------------------DVRVFLCKQWQELAMFNEHTAMVTGVR  140 (162)
Q Consensus       106 ~~~~~~~~---------------------------------------------~~~i~~~~~~~~~~~~~~h~~~v~~~~  140 (162)
                      .++.+...                                             .+..++..+.+.+-++. +..++.+..
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~  483 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGT  483 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCE
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcc
Confidence            77766432                                             13444555554443333 222333334


Q ss_pred             ECCCCceEEEeecCCeEEEeeC
Q psy12456        141 FGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       141 ~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +...+..+..++.|+.++.||.
T Consensus       484 ~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          484 LTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             EEETTTEEEEECTTSEEEEEET
T ss_pred             eEeCCCEEEEECCCCcEEEEEC
Confidence            5556677777899999999984

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.15  E-value=7.5e-05  Score=58.85  Aligned_cols=130  Identities=12%  Similarity=0.081  Sum_probs=85.4

Q ss_pred             CCCC---cEEEEeeCCCcEEEEECCCCeeeeeccCCC-----------CCE------------------------EEEEE
Q psy12456         17 HPDG---LIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-----------GPI------------------------QALSF   58 (162)
Q Consensus        17 ~~~g---~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~-----------~~v------------------------~~i~~   58 (162)
                      ..+|   .+++.++.+|.+.++|.++++.+..++...           .++                        ..+++
T Consensus       321 ~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~  400 (677)
T 1kb0_A          321 KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSF  400 (677)
T ss_dssp             EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEE
T ss_pred             ccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceE
Confidence            3466   688999999999999999999876654221           111                        14688


Q ss_pred             ccCCCEEEEEeC-------------------------------------------CCeEEEEEcccCcceeEEeeCCCCC
Q psy12456         59 SENGYYLATAAD-------------------------------------------ENCVKLWDLRKLKNFKTLQLDPNYE   95 (162)
Q Consensus        59 ~~~~~~l~s~~~-------------------------------------------d~~v~~wd~~~~~~~~~~~~~~~~~   95 (162)
                      +|+..++.+...                                           .+.|..||+.+.+.+-+....  .+
T Consensus       401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~  478 (677)
T 1kb0_A          401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--SP  478 (677)
T ss_dssp             ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES--SS
T ss_pred             cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC--CC
Confidence            998887777543                                           267999999887754444332  23


Q ss_pred             eeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCc-ccEEEEEECCCCceE
Q psy12456         96 IRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHT-AMVTGVRFGTHAHYL  148 (162)
Q Consensus        96 v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l  148 (162)
                      .....+...+..+..++.+  +++++.++.+.+.++.... ....-+.|.++++.+
T Consensus       479 ~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          479 WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence            3444555666677777666  6677777888887776433 223345566677544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.14  E-value=0.00032  Score=48.34  Aligned_cols=129  Identities=9%  Similarity=0.176  Sum_probs=86.5

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCC----CCC
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDP----NYE   95 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~----~~~   95 (162)
                      ++++.+.-.++.+.+||.++.+.+.+++....+   ..+.+++..|..+..++.|.++|..+++...+.....    ...
T Consensus        75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~  151 (243)
T 3mbr_X           75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDN  151 (243)
T ss_dssp             TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCC
T ss_pred             CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccc
Confidence            556666777899999999999999988754433   2344567777777788999999999888766655421    123


Q ss_pred             eeEEEECCCCCEEEEe--cccEEEEEeCCceEEEEeec-------------CcccEEEEEECCCCc-eEEEee
Q psy12456         96 IRDLCFDQSGTYMAVA--GTDVRVFLCKQWQELAMFNE-------------HTAMVTGVRFGTHAH-YLASSS  152 (162)
Q Consensus        96 v~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~-------------h~~~v~~~~~s~~~~-~l~s~s  152 (162)
                      ++.+.+. +|+..+..  +.++.+.+.++.+.+..+.-             -....+++++.|+++ +++||-
T Consensus       152 lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          152 LNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             ceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            4566665 55554443  22366667777776665541             113568999998654 556664

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.13  E-value=0.00016  Score=51.15  Aligned_cols=135  Identities=13%  Similarity=0.071  Sum_probs=85.1

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeE
Q psy12456         19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRD   98 (162)
Q Consensus        19 ~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~   98 (162)
                      ++ .+.+++.++.+..+|.+ ++....+..+...+.++...+++. +..++.++.+..||.. .+....+... ...+.+
T Consensus       107 ~~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~-~~~~~~  181 (330)
T 3hxj_A          107 ED-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN-DAITSA  181 (330)
T ss_dssp             TT-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS-SCCCSC
T ss_pred             CC-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC-CCceee
Confidence            44 45567788999999988 776666655555556667777776 5567778889999987 4444444432 234666


Q ss_pred             EEECCCCCEEEEecccEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         99 LCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +...+++.+.+.. ..+..++ ...+.+..+......+.++...+++..++ ++.++.+..++
T Consensus       182 ~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~gl~~~~  241 (330)
T 3hxj_A          182 ASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV-TSLDGHLYAIN  241 (330)
T ss_dssp             CEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE-EETTTEEEEEC
T ss_pred             eEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE-EcCCCeEEEEC
Confidence            7777778766555 4455555 44444444444445567777777766554 44555555543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.12  E-value=0.00087  Score=48.22  Aligned_cols=150  Identities=11%  Similarity=0.197  Sum_probs=94.7

Q ss_pred             EEEeCCC-CcEEEEeeCCCcEEEEECCCCeeee-eccC----CC--CCEEEEEE---ccCCCEEEEEe------------
Q psy12456         13 TAQLHPD-GLIFGIGTSDSQVQIWDLKKQKNVT-DFQL----DA--GPIQALSF---SENGYYLATAA------------   69 (162)
Q Consensus        13 ~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~~~~-~~~~----~~--~~v~~i~~---~~~~~~l~s~~------------   69 (162)
                      +++|++. +.++++.-..|+|..||...+.... .+..    ..  ..+..|.|   .|++.++++..            
T Consensus        17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~   96 (334)
T 2p9w_A           17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSS   96 (334)
T ss_dssp             CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCS
T ss_pred             CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccccc
Confidence            5788884 4444444479999999997654332 2322    11  13578999   68877777544            


Q ss_pred             -CCCeEEEEEcc---cCcceeEEeeC------------CCCCeeEEEECCCCCEEEEeccc-EEEEEeCCc-eEEEEee-
Q psy12456         70 -DENCVKLWDLR---KLKNFKTLQLD------------PNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQW-QELAMFN-  130 (162)
Q Consensus        70 -~d~~v~~wd~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~-~~~~~~~-  130 (162)
                       .+..|..||+.   +.+.+....+.            ......+++..++|..-++++.. ..|+..... +.+..+. 
T Consensus        97 ~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~  176 (334)
T 2p9w_A           97 HGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAW  176 (334)
T ss_dssp             SSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEE
T ss_pred             CCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeee
Confidence             26779999998   55554433321            11237889999999877777666 566655432 2222211 


Q ss_pred             -----cCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        131 -----EHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       131 -----~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                           ......+++.+.|++..|+....++.+.-+|+
T Consensus       177 ~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          177 ESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             CCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred             cCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence                 11223678999999987776655888877764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.12  E-value=0.00014  Score=51.43  Aligned_cols=142  Identities=13%  Similarity=0.127  Sum_probs=83.7

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEee
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL   90 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~   90 (162)
                      +.++...++|.++ .|+.++.+..+|.+ ++.+..+......+.++...+++...+ ++  +.+..+| .+.+.......
T Consensus       139 ~~~~~~~~~g~l~-vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~  212 (330)
T 3hxj_A          139 YATPIVSEDGTIY-VGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA  212 (330)
T ss_dssp             CSCCEECTTSCEE-EECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC
T ss_pred             eeeeEEcCCCEEE-EEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc
Confidence            4455666778755 57778999999988 777766665555666777877777554 44  6788898 54443333332


Q ss_pred             CCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         91 DPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                       ....+.++...+++.+.+..... +..++ ...+.+..+......+..+...+++... .++.++.+..+|
T Consensus       213 -~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~ggl~~~d  281 (330)
T 3hxj_A          213 -GYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDTIY-FGSYDGHLYAIN  281 (330)
T ss_dssp             -SSCCCSCCEECTTSCEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSCEE-EECTTCEEEEEC
T ss_pred             -CCcceeceEECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCeEE-EecCCCCEEEEC
Confidence             22346778888887665544322 33332 2334444444333333444455555444 455566666554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.09  E-value=0.001  Score=47.19  Aligned_cols=149  Identities=8%  Similarity=0.048  Sum_probs=91.8

Q ss_pred             cEEEEEeCC-CCcEEEEeeC-----------------CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEE-eC
Q psy12456         10 TLTTAQLHP-DGLIFGIGTS-----------------DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATA-AD   70 (162)
Q Consensus        10 ~v~~~~~~~-~g~~~a~g~~-----------------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~   70 (162)
                      ..+.+++.| +|+++++-..                 +|.|..||..+++....... ......|+++|++++|..+ ..
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~  205 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFL  205 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGG
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCC
Confidence            467899999 9988776432                 36788899876654322211 1223578999999866555 55


Q ss_pred             CCeEEEEEcccCc--ceeEEeeCCCCCeeEEEECCCCCEEEEecc----------cEEEEEeCC-ceEEEEeecC----c
Q psy12456         71 ENCVKLWDLRKLK--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT----------DVRVFLCKQ-WQELAMFNEH----T  133 (162)
Q Consensus        71 d~~v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~~~i~~~~~-~~~~~~~~~h----~  133 (162)
                      .+.|..|++....  ....+.. ... ...+++.++|.+.++...          ..+|+.+.. .+.+..+...    .
T Consensus       206 ~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~  283 (322)
T 2fp8_A          206 SHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAG  283 (322)
T ss_dssp             GTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTT
T ss_pred             CCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCcc
Confidence            6889999986421  1122211 122 678899999987666543          344444432 4445455433    2


Q ss_pred             ccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        134 AMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       134 ~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..++.+.+ .+++++++....+.|..+++
T Consensus       284 ~~~~~~~~-~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          284 EHFEQIQE-HDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             SCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred             ccceEEEE-eCCEEEEeecCCCceEEEec
Confidence            34666666 46777777777778887764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.07  E-value=0.0005  Score=47.92  Aligned_cols=134  Identities=8%  Similarity=0.056  Sum_probs=88.7

Q ss_pred             EEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCC-
Q psy12456         14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDP-   92 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~-   92 (162)
                      +++.. ++++.+.-.++.+.+||.++.+.+.+++.....   ..+++++..|+.++.++.|.++|..+.+...+..... 
T Consensus       101 it~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~  176 (268)
T 3nok_A          101 LASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR  176 (268)
T ss_dssp             EEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC---CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred             EEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce---eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC
Confidence            33443 456666667899999999999999988754332   2344678888888889999999998888766655421 


Q ss_pred             ---CCCeeEEEECCCCCEEEEec--ccEEEEEeCCceEEEEeecC-------------cccEEEEEECCCC-ceEEEee
Q psy12456         93 ---NYEIRDLCFDQSGTYMAVAG--TDVRVFLCKQWQELAMFNEH-------------TAMVTGVRFGTHA-HYLASSS  152 (162)
Q Consensus        93 ---~~~v~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~h-------------~~~v~~~~~s~~~-~~l~s~s  152 (162)
                         ...++.+.|. +|+..+..-  .++.+.+..+.+.+..+.-.             ....++++|.|++ ++++||-
T Consensus       177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence               1134667776 665554442  22666666677666655421             1357899999865 4666664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.96  E-value=0.002  Score=46.07  Aligned_cols=150  Identities=11%  Similarity=0.136  Sum_probs=85.1

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeec-cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc---ccCcc
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF-QLDAGPIQALSFSENGYYLATAADENCVKLWDL---RKLKN   84 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~---~~~~~   84 (162)
                      ..+..+++.|++.+++++...+..+-.|- .++.-..+ ......+..+++.+++..++ ++.++.+...+.   .+++.
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~  240 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGE  240 (327)
T ss_dssp             CCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECC
T ss_pred             cceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEe
Confidence            35788999999999887765544444542 12211111 12345788899999887654 455787776631   12221


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeC---CceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK---QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +..-.......+..+.+.+++..++++......+..+   +|+.+.........+.++.|.++++ +..++.+|.|.-++
T Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          241 LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             CBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             ccCCcccCCcceEEEEecCCCEEEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            1110001123478888998888887765442233332   3444432222334577888875555 44566788776543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.91  E-value=0.002  Score=44.36  Aligned_cols=150  Identities=8%  Similarity=-0.059  Sum_probs=84.8

Q ss_pred             CcEEEEEeCCC-CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC---CCeEEEEEcccCcc
Q psy12456          9 PTLTTAQLHPD-GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD---ENCVKLWDLRKLKN   84 (162)
Q Consensus         9 ~~v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---d~~v~~wd~~~~~~   84 (162)
                      .....++++|+ +.++++-..++.|.+++++.................++++|++..|..+..   .+.|..+++.... 
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-  157 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-  157 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-
Confidence            45688999996 556666666789999998754322222222245689999996555555543   3678888875322 


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ...+..........++++|++..+..+...   +.+++............ .....+++.. .+..+++....+.|..+|
T Consensus       158 ~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEe
Confidence            222221122346889999987666555432   44444432222222222 2233556553 344555555567777765

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.88  E-value=0.0027  Score=44.80  Aligned_cols=149  Identities=14%  Similarity=0.110  Sum_probs=83.2

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC-C-eEEEEEcccCccee
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE-N-CVKLWDLRKLKNFK   86 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-~-~v~~wd~~~~~~~~   86 (162)
                      .....++++|+|+++++-..++.|..||.+.+ ....+.. ......++++++++++++.... + .|..+|..+.+...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45677899999998888778899999998653 3333332 2457889999999866655432 2 45556655443222


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCc--e-EEEEee---------cCcccEEEEEECCCCc-eEEEeec
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW--Q-ELAMFN---------EHTAMVTGVRFGTHAH-YLASSSM  153 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~~~---------~h~~~v~~~~~s~~~~-~l~s~s~  153 (162)
                      ............++..+.+..+++-..+.++|.+...  . .+....         ..-.....+  +|+++ ++++-..
T Consensus       110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred             EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence            2221111223455555555544444334455554322  1 121000         111234555  66765 4455566


Q ss_pred             CCeEEEee
Q psy12456        154 DRTLKLYS  161 (162)
Q Consensus       154 D~~i~iw~  161 (162)
                      .+.|..++
T Consensus       188 ~~~I~~~~  195 (306)
T 2p4o_A          188 KMLLLRIP  195 (306)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence            77787776

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.84  E-value=7.8e-05  Score=58.85  Aligned_cols=82  Identities=11%  Similarity=0.166  Sum_probs=60.6

Q ss_pred             CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC-E
Q psy12456         29 DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT-Y  107 (162)
Q Consensus        29 dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  107 (162)
                      +|.|+.||+++++.+..++.+. ++..-.+...+.+++.++.|+.+++||.++.+.+-+++.........+.|..+|+ |
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            4789999999999988876553 2333355667889999999999999999998887777655433335567777775 5


Q ss_pred             EEEe
Q psy12456        108 MAVA  111 (162)
Q Consensus       108 ~~~~  111 (162)
                      +++.
T Consensus       533 v~~~  536 (689)
T 1yiq_A          533 VTFM  536 (689)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.79  E-value=0.0037  Score=43.39  Aligned_cols=151  Identities=11%  Similarity=0.212  Sum_probs=96.0

Q ss_pred             cEEEEEeCCCC-cEEEEeeCCCcEEEEECCCCeeeeeccCC-CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc---
Q psy12456         10 TLTTAQLHPDG-LIFGIGTSDSQVQIWDLKKQKNVTDFQLD-AGPIQALSFSENGYYLATAADENCVKLWDLRKLKN---   84 (162)
Q Consensus        10 ~v~~~~~~~~g-~~~a~g~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~---   84 (162)
                      .+..++++|++ .++++...++.|...|++ ++.++.+... ..-...|++.+++.++++.-.++.+.++++.....   
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~  106 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKI  106 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeee
Confidence            58999999964 577788889999999987 8887777532 24577899999888777665677888888754332   


Q ss_pred             eeEEee-----CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC---ceEEEEee-------cCcccEEEEEECCCC-c
Q psy12456         85 FKTLQL-----DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ---WQELAMFN-------EHTAMVTGVRFGTHA-H  146 (162)
Q Consensus        85 ~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~---~~~~~~~~-------~h~~~v~~~~~s~~~-~  146 (162)
                      ......     ........++++|.+..+.++...  ..+|.++.   ...+....       .+...+.++++.|.. +
T Consensus       107 ~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~  186 (255)
T 3qqz_A          107 LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNT  186 (255)
T ss_dssp             EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTE
T ss_pred             eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCe
Confidence            222221     123346889999988655554432  56776641   01111111       123457889998764 4


Q ss_pred             eEEEeecCCeEEEee
Q psy12456        147 YLASSSMDRTLKLYS  161 (162)
Q Consensus       147 ~l~s~s~D~~i~iw~  161 (162)
                      +++.....+.+-.+|
T Consensus       187 lliLS~~s~~L~~~d  201 (255)
T 3qqz_A          187 LLVLSHESRALQEVT  201 (255)
T ss_dssp             EEEEETTTTEEEEEC
T ss_pred             EEEEECCCCeEEEEc
Confidence            445554555555544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.77  E-value=0.0052  Score=44.72  Aligned_cols=150  Identities=13%  Similarity=0.244  Sum_probs=88.2

Q ss_pred             EEEEeCCCCcEEEEe------------eCCCcEEEEECCCCe-eeeecc--C-----CCCCEEEEEEcc--CCC-EEEEE
Q psy12456         12 TTAQLHPDGLIFGIG------------TSDSQVQIWDLKKQK-NVTDFQ--L-----DAGPIQALSFSE--NGY-YLATA   68 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g------------~~dg~i~~wd~~~~~-~~~~~~--~-----~~~~v~~i~~~~--~~~-~l~s~   68 (162)
                      -.+++.|+|..+.+.            ..+|.|.++|+++.. ....+.  +     ..-....|.+.+  ++. +|..+
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            345678888766554            268999999997421 112222  1     123456777765  343 34444


Q ss_pred             -eC--CCeEEEEEcccCcc----eeEEeeCCCCCeeEEEECCCCCEEEEec-----------------ccEEEEEeCCce
Q psy12456         69 -AD--ENCVKLWDLRKLKN----FKTLQLDPNYEIRDLCFDQSGTYMAVAG-----------------TDVRVFLCKQWQ  124 (162)
Q Consensus        69 -~~--d~~v~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~  124 (162)
                       ..  +.++.+|++.....    +..+........+++.+.++|.+.++..                 ....++.+... 
T Consensus       133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-  211 (355)
T 3sre_A          133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-  211 (355)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-
T ss_pred             ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-
Confidence             33  46788888754322    2333333334578999999998777654                 12466665543 


Q ss_pred             EEEEeecCcccEEEEEECCCCceE-EEeecCCeEEEeeC
Q psy12456        125 ELAMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTLKLYSL  162 (162)
Q Consensus       125 ~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iw~~  162 (162)
                      .+......-..-++++||||++.+ ++-+..+.|..|++
T Consensus       212 ~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~  250 (355)
T 3sre_A          212 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  250 (355)
T ss_dssp             CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEE
Confidence            222222333457889999999755 55556778887763

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.66  E-value=0.0026  Score=45.98  Aligned_cols=134  Identities=9%  Similarity=-0.008  Sum_probs=79.5

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEE
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDL   99 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~   99 (162)
                      +..+.+++.+|.+..+|.++++.+.....  .....+..  ++..+..++.++.+..+|.++.+..-.............
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~  314 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP  314 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC
T ss_pred             CCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC
Confidence            34566677889999999999988766553  23444444  356788888899999999987664433321111112222


Q ss_pred             EECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEE-EEECCCCceEEEeecCCeEEEee
Q psy12456        100 CFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTG-VRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       100 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ...  +..+..++.+  +.+++..+.+.+..+......+.. ...  .+..+..++.|+.+..|+
T Consensus       315 ~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          315 VLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             EEE--CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            222  3455555554  555565666665555442222221 111  134556678899999886

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.65  E-value=0.0044  Score=49.42  Aligned_cols=147  Identities=11%  Similarity=0.109  Sum_probs=79.0

Q ss_pred             EEEeCCCCcEEEEeeCC-----CcEEEEECCCCee--eeeccC-CCCCEEEEEEccCCCEEEEEeC---CCeEEEEEccc
Q psy12456         13 TAQLHPDGLIFGIGTSD-----SQVQIWDLKKQKN--VTDFQL-DAGPIQALSFSENGYYLATAAD---ENCVKLWDLRK   81 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~d-----g~i~~wd~~~~~~--~~~~~~-~~~~v~~i~~~~~~~~l~s~~~---d~~v~~wd~~~   81 (162)
                      .+.|+|||+.|+....|     .+|.++++.++..  ...+.. +......+.|+||+++|+..+.   ...|.++|+.+
T Consensus       225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred             eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            57899999887777665     2578888876532  223322 2234667899999998887663   33677888865


Q ss_pred             Cc-ce--eEEeeCCCCCeeEEEECCCCCEEEEecc----cEEEEEeCCc--eEEEE-eecCcc--cEEEEEECCCCceEE
Q psy12456         82 LK-NF--KTLQLDPNYEIRDLCFDQSGTYMAVAGT----DVRVFLCKQW--QELAM-FNEHTA--MVTGVRFGTHAHYLA  149 (162)
Q Consensus        82 ~~-~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~i~~~~~~--~~~~~-~~~h~~--~v~~~~~s~~~~~l~  149 (162)
                      .. ..  ..+..........+.|+..+.++.....    ..+++.....  ..... +-.|..  .+..+.+. .+.+++
T Consensus       305 ~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~  383 (751)
T 2xe4_A          305 GNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVV  383 (751)
T ss_dssp             CTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEE
T ss_pred             CCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEE
Confidence            42 12  2221112222333443333444444332    2455554221  11112 222322  35556665 345566


Q ss_pred             EeecCCeEEEe
Q psy12456        150 SSSMDRTLKLY  160 (162)
Q Consensus       150 s~s~D~~i~iw  160 (162)
                      +...|+..++|
T Consensus       384 ~~~~~g~~~l~  394 (751)
T 2xe4_A          384 AGRRAGLTRIW  394 (751)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEeCCEEEEE
Confidence            77778866554

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.63  E-value=0.0013  Score=44.74  Aligned_cols=140  Identities=14%  Similarity=0.089  Sum_probs=78.0

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeee------eeccC-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEccc
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV------TDFQL-DAGPIQALSFSENGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~------~~~~~-~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      ..++.++|||+|.+.|+  .+|.+.-.+..+.+..      ..+-. --....++.|.|+|.+.++  .|+.|.-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            46679999999999988  6677666665442111      11100 0011367899999998887  558776555321


Q ss_pred             Ccc-----eeEEeeC-CCCCeeEEEECCCCCEEEEecccEEEEEeCCc---------eEEEEeecCcccEEEEEECCCCc
Q psy12456         82 LKN-----FKTLQLD-PNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW---------QELAMFNEHTAMVTGVRFGTHAH  146 (162)
Q Consensus        82 ~~~-----~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~~~h~~~v~~~~~s~~~~  146 (162)
                      ...     ....... .=..+..+.+.|+|.+-++.  +.+++.....         .........-..-..+.|.|++.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            111     0011111 01247899999999998888  3323322111         00111112333345577899888


Q ss_pred             eEEEeecCCe
Q psy12456        147 YLASSSMDRT  156 (162)
Q Consensus       147 ~l~s~s~D~~  156 (162)
                      +++..  ++.
T Consensus       195 l~~v~--~g~  202 (236)
T 1tl2_A          195 LFGVQ--GGK  202 (236)
T ss_dssp             EEEEE--TTE
T ss_pred             EEEEe--CCe
Confidence            77654  553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.60  E-value=0.012  Score=43.97  Aligned_cols=148  Identities=8%  Similarity=0.049  Sum_probs=83.1

Q ss_pred             cEEEEEeCCC---CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC---Ce-EEEEEccc-
Q psy12456         10 TLTTAQLHPD---GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE---NC-VKLWDLRK-   81 (162)
Q Consensus        10 ~v~~~~~~~~---g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---~~-v~~wd~~~-   81 (162)
                      ....++++|+   |.++++-.. +.|+.+|+.+++...... .......++++++++++++....   .. +...+... 
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            3567899985   766665444 889999997776554433 34557899999999955544321   11 22232211 


Q ss_pred             CcceeEEeeCCCCCeeEEEECC-CCCEEEEecccEEEEEeCC--ceEEEE-ee-cCcccEEEEEECCCCc-eEEEeecCC
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQ-SGTYMAVAGTDVRVFLCKQ--WQELAM-FN-EHTAMVTGVRFGTHAH-YLASSSMDR  155 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~i~~~~~--~~~~~~-~~-~h~~~v~~~~~s~~~~-~l~s~s~D~  155 (162)
                      ........  .......++++| ++.+.++-..+.+|+.+..  ...... +. .....-..++|+|+++ ++++-...+
T Consensus       218 ~~~~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~  295 (433)
T 4hw6_A          218 FTERLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH  295 (433)
T ss_dssp             TCCEEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred             eecccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence            11001111  122356788999 6665555444445554433  222111 11 1122234699999998 556666677


Q ss_pred             eEEEee
Q psy12456        156 TLKLYS  161 (162)
Q Consensus       156 ~i~iw~  161 (162)
                      .|+.++
T Consensus       296 ~I~~~~  301 (433)
T 4hw6_A          296 CIYRVD  301 (433)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777754

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.60  E-value=0.0096  Score=43.02  Aligned_cols=151  Identities=9%  Similarity=0.020  Sum_probs=87.1

Q ss_pred             cEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456         10 TLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSEN-GYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        10 ~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      .+..++|++ ++.++.+-...+.|..++++.+.....+.........+++++. ++++++-...+.|.+.++..... ..
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~  152 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KV  152 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EE
Confidence            457889996 5556666666788999998765533333322234468899875 45555556677899998864322 22


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEec-cc-EEEEEeCC-ceEEEE-eecCcccEEEEEECCCCc-eEEEeecCCeEEEee
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAG-TD-VRVFLCKQ-WQELAM-FNEHTAMVTGVRFGTHAH-YLASSSMDRTLKLYS  161 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~-~~-~~i~~~~~-~~~~~~-~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iw~  161 (162)
                      +..........+++.|.+..+.... .. .+|+.... ...... ....-....+++++|++. ++.+-+..+.|..++
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~  231 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  231 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEe
Confidence            2212223468899998655444433 33 44443321 111222 222334578899997544 445555566676665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.59  E-value=0.011  Score=43.38  Aligned_cols=152  Identities=9%  Similarity=0.019  Sum_probs=87.4

Q ss_pred             CcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcccCccee
Q psy12456          9 PTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSEN-GYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         9 ~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      .....++|++ ++.++.+-...+.|..++++.+.....+.........+++++. +.++++-...+.|.+.++..... .
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~  194 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-K  194 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-E
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-E
Confidence            3467789997 5556666667788999998766543333322233457889875 44555555677888888754222 2


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEec-cc-EEEEEeCC-ceEEE-EeecCcccEEEEEECCCCc-eEEEeecCCeEEEee
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAG-TD-VRVFLCKQ-WQELA-MFNEHTAMVTGVRFGTHAH-YLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~-~~i~~~~~-~~~~~-~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iw~  161 (162)
                      .+..........+++.|.+..+.... .. .+|+.... ..... .....-....+++|+|++. ++++-+..+.|..++
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d  274 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN  274 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence            22222223468899998665544443 22 44444321 11111 2223334578899986544 445555566676665

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.57  E-value=0.013  Score=43.71  Aligned_cols=150  Identities=10%  Similarity=0.139  Sum_probs=88.5

Q ss_pred             EEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeec-cCC-CCCEEEEEEccCCCEEEEE-eCCCeEEEEEcccC--cc-
Q psy12456         12 TTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDF-QLD-AGPIQALSFSENGYYLATA-ADENCVKLWDLRKL--KN-   84 (162)
Q Consensus        12 ~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~-~~~-~~~v~~i~~~~~~~~l~s~-~~d~~v~~wd~~~~--~~-   84 (162)
                      ..++++| +|.++++-..++.|+.+|..+++....+ ... ...-..++|+|++++|..+ ...+.|..+++...  .. 
T Consensus       231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~  310 (433)
T 4hw6_A          231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLA  310 (433)
T ss_dssp             CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBC
T ss_pred             CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccC
Confidence            4578899 8888877777889999998866552222 211 1223469999999855444 45678988876421  10 


Q ss_pred             -eeEEeeC--------------CCCCeeEEEE---------CCCCCEEEEecccEEEEEeCCceEEEEeecC--------
Q psy12456         85 -FKTLQLD--------------PNYEIRDLCF---------DQSGTYMAVAGTDVRVFLCKQWQELAMFNEH--------  132 (162)
Q Consensus        85 -~~~~~~~--------------~~~~v~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h--------  132 (162)
                       ...+...              .-.....+++         .+++.+.++-..+.+|..+.....+..+-+.        
T Consensus       311 ~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~  390 (433)
T 4hw6_A          311 VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGY  390 (433)
T ss_dssp             CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCC
T ss_pred             cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCcccc
Confidence             1111111              0112456888         6666665554444444433332233332211        


Q ss_pred             ----------cccEEEEEEC-CCCceEEEeecCCeEEEee
Q psy12456        133 ----------TAMVTGVRFG-THAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       133 ----------~~~v~~~~~s-~~~~~l~s~s~D~~i~iw~  161 (162)
                                -....++++. +++.++++=...+.|+..+
T Consensus       391 ~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          391 VDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             BCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence                      1236789998 7788887777777888765

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.52  E-value=0.023  Score=45.38  Aligned_cols=149  Identities=11%  Similarity=0.124  Sum_probs=94.7

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc--------CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ--------LDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~--------~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      ...|.++...++|.+.+ |+.++-+..||.++++...-..        .....|.++...+++..|..|..++-+..||.
T Consensus       356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            45689999999998775 6777679999987664332211        12357899998888885666777677999998


Q ss_pred             ccCcceeEEee----CCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEeec-------CcccEEEEEECCCCceE
Q psy12456         80 RKLKNFKTLQL----DPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNE-------HTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        80 ~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------h~~~v~~~~~s~~~~~l  148 (162)
                      ++.+ ...+..    -....|.++...+++.+.+.....+.+++....+ ...+..       ....|.++...+++++.
T Consensus       435 ~~~~-~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW  512 (795)
T 4a2l_A          435 NSGQ-VENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRS-FTTIEKEKDGTPVVSKQITTLFRDSHKRLW  512 (795)
T ss_dssp             TTCC-EEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTE-EEECCBCTTCCBCCCCCEEEEEECTTCCEE
T ss_pred             CCCc-EEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCe-EEEccccccccccCCceEEEEEECCCCCEE
Confidence            7543 222221    1123588888888887655554446566544432 222211       23568899888888876


Q ss_pred             EEeecCCeEEEee
Q psy12456        149 ASSSMDRTLKLYS  161 (162)
Q Consensus       149 ~s~s~D~~i~iw~  161 (162)
                      +... +| +..|+
T Consensus       513 igt~-~G-l~~~~  523 (795)
T 4a2l_A          513 IGGE-EG-LSVFK  523 (795)
T ss_dssp             EEES-SC-EEEEE
T ss_pred             EEeC-Cc-eEEEe
Confidence            6543 44 55443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.50  E-value=0.012  Score=46.33  Aligned_cols=74  Identities=15%  Similarity=0.155  Sum_probs=54.2

Q ss_pred             EEEEeCCCCcEEEEeeCCCc-------------------EEEEECCCCeeeeeccC--CC-------CCEEEEEEccCCC
Q psy12456         12 TTAQLHPDGLIFGIGTSDSQ-------------------VQIWDLKKQKNVTDFQL--DA-------GPIQALSFSENGY   63 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg~-------------------i~~wd~~~~~~~~~~~~--~~-------~~v~~i~~~~~~~   63 (162)
                      ...++.|++.++..++.++.                   |..+|.++++.+..++.  |.       .+.....+..+++
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            34678888888888887764                   99999999998877764  22       2333333334664


Q ss_pred             ---EEEEEeCCCeEEEEEcccCcce
Q psy12456         64 ---YLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus        64 ---~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                         .++.++.++.+.++|..+.+.+
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEe
Confidence               6888999999999998877765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.47  E-value=0.008  Score=43.39  Aligned_cols=69  Identities=7%  Similarity=0.006  Sum_probs=47.3

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCC---------CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEe
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLD---------AGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~---------~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~   89 (162)
                      +..+.+++.++.|..+|.++++.+..+...         ...+.. ....++..+..++.++.|..+|.++.+..-...
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            455667788899999999999887666542         122322 122245678888899999999998776544443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.39  E-value=0.0031  Score=49.41  Aligned_cols=107  Identities=15%  Similarity=0.170  Sum_probs=67.3

Q ss_pred             EEEeCC-CCcEEEEeeCCC-----------cEEEEECCCCeee--eeccC-CCCCEEEEEEccCCCEEEEEeC-CCeEEE
Q psy12456         13 TAQLHP-DGLIFGIGTSDS-----------QVQIWDLKKQKNV--TDFQL-DAGPIQALSFSENGYYLATAAD-ENCVKL   76 (162)
Q Consensus        13 ~~~~~~-~g~~~a~g~~dg-----------~i~~wd~~~~~~~--~~~~~-~~~~v~~i~~~~~~~~l~s~~~-d~~v~~   76 (162)
                      .+++.| +|++++.|+.+.           .+.+||+.+++..  ..+.. +.....++++..+++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            345666 899999988653           5889999887532  22221 2223345677889999999984 457999


Q ss_pred             EEcccCc--ceeEEeeCCCCCeeEEEECCCCCEEEEecc--------cEEEEEeC
Q psy12456         77 WDLRKLK--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT--------DVRVFLCK  121 (162)
Q Consensus        77 wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~i~~~~  121 (162)
                      ||..+.+  .+..+.. .+. -..++..+++++++.|+.        ++.+|+..
T Consensus       270 yd~~t~~W~~~~~~~~-~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQV-ARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             EEGGGTEEEECCCCSS-CCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ecCcCCceeECCCCCc-ccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCC
Confidence            9987532  2211111 111 234566678999888882        36667653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.38  E-value=0.023  Score=42.25  Aligned_cols=70  Identities=20%  Similarity=0.299  Sum_probs=49.3

Q ss_pred             EEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCC-CCCEEEEEEccCCCEEE-EEeCCCeEEEEEcc
Q psy12456         11 LTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLD-AGPIQALSFSENGYYLA-TAADENCVKLWDLR   80 (162)
Q Consensus        11 v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~-s~~~d~~v~~wd~~   80 (162)
                      ...++++| +|.++++-..++.|..+|...+.....+... ...-..++|+|++++|. +-...+.|..++..
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            35678999 8888888778899999998876542222221 13356899999999544 44567788888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.36  E-value=0.016  Score=40.11  Aligned_cols=115  Identities=12%  Similarity=0.132  Sum_probs=70.6

Q ss_pred             ccCCCCCEEEEEEccCCCEEE-EEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC
Q psy12456         46 FQLDAGPIQALSFSENGYYLA-TAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ  122 (162)
Q Consensus        46 ~~~~~~~v~~i~~~~~~~~l~-s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~  122 (162)
                      +.+-...+..++++|++..|. +...++.|...|.. .+..+.+..........+++.+++.++++.-.+  +.++....
T Consensus        22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred             CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence            444445799999999766554 46677888888886 555555554433457888999999876664444  33333332


Q ss_pred             ce---EEEEee------cCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456        123 WQ---ELAMFN------EHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       123 ~~---~~~~~~------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..   .+....      ..+....+++|.|.++.|..+.......+|.
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~  148 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYK  148 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEE
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEE
Confidence            21   122221      2344578999999886555555544445543

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.33  E-value=0.021  Score=40.57  Aligned_cols=152  Identities=13%  Similarity=0.044  Sum_probs=85.6

Q ss_pred             CcEEEEEeCCC-CcEEEEeeCCCcEEEEECCC----CeeeeeccCCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcccC
Q psy12456          9 PTLTTAQLHPD-GLIFGIGTSDSQVQIWDLKK----QKNVTDFQLDAGPIQALSFSEN-GYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         9 ~~v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~----~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      .....++|+++ +.++.+-..++.|..++++.    ......+.........+++++. ++.+++-...+.|.+.|+...
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            34568899985 55666666678999999875    2222223222234468899874 445555566788999998643


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCCEEEEec-cc-EEEEEeC-CceEEEEe-ecCcccEEEEEECCCCc-eEEEeecCCeE
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGTYMAVAG-TD-VRVFLCK-QWQELAMF-NEHTAMVTGVRFGTHAH-YLASSSMDRTL  157 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~-~~i~~~~-~~~~~~~~-~~h~~~v~~~~~s~~~~-~l~s~s~D~~i  157 (162)
                      . ...+........+.+++.|.+..+..+. .. .+|+... .......+ ...-....+++++|++. ++.+-+..+.|
T Consensus       110 ~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I  188 (316)
T 1ijq_A          110 K-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  188 (316)
T ss_dssp             S-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             c-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeE
Confidence            2 2222221223468899998655443333 22 3454432 22222222 22334578899997654 44555556677


Q ss_pred             EEee
Q psy12456        158 KLYS  161 (162)
Q Consensus       158 ~iw~  161 (162)
                      ..++
T Consensus       189 ~~~d  192 (316)
T 1ijq_A          189 SSID  192 (316)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.31  E-value=0.024  Score=41.04  Aligned_cols=101  Identities=12%  Similarity=0.045  Sum_probs=58.8

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe-eeeecc---CCCCCEEEEEEccC----CCEEEEEeC---C----Ce
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK-NVTDFQ---LDAGPIQALSFSEN----GYYLATAAD---E----NC   73 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~-~~~~~~---~~~~~v~~i~~~~~----~~~l~s~~~---d----~~   73 (162)
                      .....+++.|+|+++++ ..+|.|+++|. .++ .+..+.   ........|+++|+    +..+++-..   +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            34578899999986655 55699999974 444 333322   12345789999997    444444332   2    45


Q ss_pred             EEEEEcccC-------cce-eEEeeCCCCCeeEEEECCCCCEEEEe
Q psy12456         74 VKLWDLRKL-------KNF-KTLQLDPNYEIRDLCFDQSGTYMAVA  111 (162)
Q Consensus        74 v~~wd~~~~-------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~  111 (162)
                      |..|+....       +.+ ..+..........+.|.|+|.+.++.
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            666666432       111 11211111124678999999876664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.31  E-value=0.027  Score=41.44  Aligned_cols=153  Identities=10%  Similarity=0.041  Sum_probs=86.2

Q ss_pred             CCcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC----eeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEccc
Q psy12456          8 GPTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ----KNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRK   81 (162)
Q Consensus         8 ~~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~----~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~   81 (162)
                      ...+..++|++ ++.++.+-...+.|+.++++..    .....+.........+++.+ .++++++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            34578899998 4556666566788999998652    22222332334677899998 455555556678899888864


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCEEEEec-c-cEEEEE--eCCceEEEEeecCcccEEEEEECCCCc-eEEEeecCCe
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG-T-DVRVFL--CKQWQELAMFNEHTAMVTGVRFGTHAH-YLASSSMDRT  156 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~-~~~i~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~  156 (162)
                      ........ ......+.+++.|.+.++.... . ..+|+.  .+...........-....+++++|++. +..+=+..+.
T Consensus       191 ~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          191 VKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             CSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            33222222 2223468899998655444433 2 233333  222111122233335678899987654 3344445566


Q ss_pred             EEEee
Q psy12456        157 LKLYS  161 (162)
Q Consensus       157 i~iw~  161 (162)
                      |..+|
T Consensus       270 I~~~d  274 (400)
T 3p5b_L          270 ISSID  274 (400)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66655

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.27  E-value=0.051  Score=43.75  Aligned_cols=152  Identities=13%  Similarity=0.044  Sum_probs=84.7

Q ss_pred             CcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCC----eeeeeccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcccC
Q psy12456          9 PTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQ----KNVTDFQLDAGPIQALSFSENGY-YLATAADENCVKLWDLRKL   82 (162)
Q Consensus         9 ~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~----~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~~   82 (162)
                      ..+.++++++ ++.++.+-...+.|+.+++...    .....+........+|++.+.+. ++++-...+.|.+.++...
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence            4567889988 5666666666788998988753    22222332334456899988664 5555556788999998643


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCCEEEEec-cc-EEEEE--eCCceEEEEeecCcccEEEEEECCCCc-eEEEeecCCeE
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGTYMAVAG-TD-VRVFL--CKQWQELAMFNEHTAMVTGVRFGTHAH-YLASSSMDRTL  157 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~-~~i~~--~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i  157 (162)
                      . ...+........+.+++.|...+|.... .+ .+|+.  .........+...-....+|++.+.+. ++++=.....|
T Consensus       504 ~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          504 K-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             S-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             e-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            3 2233222333478899998754444433 22 33433  322222222333335678888885544 44443444556


Q ss_pred             EEee
Q psy12456        158 KLYS  161 (162)
Q Consensus       158 ~iw~  161 (162)
                      ...+
T Consensus       583 ~~~d  586 (791)
T 3m0c_C          583 SSID  586 (791)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.24  E-value=0.018  Score=41.69  Aligned_cols=99  Identities=9%  Similarity=0.103  Sum_probs=58.4

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe--eeeecc---CCCCCEEEEEEccC---CCEEEEE-eCC-----CeEE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--NVTDFQ---LDAGPIQALSFSEN---GYYLATA-ADE-----NCVK   75 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~--~~~~~~---~~~~~v~~i~~~~~---~~~l~s~-~~d-----~~v~   75 (162)
                      ....+++.|+|+++++ ..+|.|++++  .++  .+..+.   ........|+++|+   +..|..+ ..+     ..|.
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            4578999999996655 5669999998  333  222222   12346789999998   4444443 322     5677


Q ss_pred             EEEcccCc-----ce-eEEee--CCCCCeeEEEECCCCCEEEEe
Q psy12456         76 LWDLRKLK-----NF-KTLQL--DPNYEIRDLCFDQSGTYMAVA  111 (162)
Q Consensus        76 ~wd~~~~~-----~~-~~~~~--~~~~~v~~~~~~~~~~~~~~~  111 (162)
                      .|+.....     .+ ..+..  ........+.|.|+|.+.++.
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            77765321     11 11210  111124688999999766653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.22  E-value=0.006  Score=47.15  Aligned_cols=130  Identities=12%  Similarity=0.069  Sum_probs=76.2

Q ss_pred             CCCc---EEEEeeCCCcEEEEECCCCeeeeeccCCC-------------CCE--------------------------EE
Q psy12456         18 PDGL---IFGIGTSDSQVQIWDLKKQKNVTDFQLDA-------------GPI--------------------------QA   55 (162)
Q Consensus        18 ~~g~---~~a~g~~dg~i~~wd~~~~~~~~~~~~~~-------------~~v--------------------------~~   55 (162)
                      ++|+   +++.++.+|.+.++|.++++.+..++...             .++                          ..
T Consensus       311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  390 (571)
T 2ad6_A          311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV  390 (571)
T ss_dssp             ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence            4673   67788999999999999998876654221             122                          23


Q ss_pred             EEEccCCCEEEEEe-------------------------------------CCCeEEEEEcccCcceeEEeeCCCCCeeE
Q psy12456         56 LSFSENGYYLATAA-------------------------------------DENCVKLWDLRKLKNFKTLQLDPNYEIRD   98 (162)
Q Consensus        56 i~~~~~~~~l~s~~-------------------------------------~d~~v~~wd~~~~~~~~~~~~~~~~~v~~   98 (162)
                      ++++|+..++....                                     .++.|..||+.+.+..-++....  .+..
T Consensus       391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~--~~~~  468 (571)
T 2ad6_A          391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWG  468 (571)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCS
T ss_pred             ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC--Cccc
Confidence            57888776666553                                     34688999988776544443321  2222


Q ss_pred             EEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCccc-EEEEEECCCCceEE
Q psy12456         99 LCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAM-VTGVRFGTHAHYLA  149 (162)
Q Consensus        99 ~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~  149 (162)
                      ..+...+..+..++.+  +..++.++.+.+-++...... -..+.+..+++.++
T Consensus       469 ~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv  522 (571)
T 2ad6_A          469 GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence            2222234455556655  566666777777666533221 12233545665443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.22  E-value=0.027  Score=39.62  Aligned_cols=150  Identities=13%  Similarity=0.128  Sum_probs=81.2

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCC--cEEEEECCCCeeeeeccC-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc-
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDS--QVQIWDLKKQKNVTDFQL-DAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN-   84 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg--~i~~wd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~-   84 (162)
                      .....+++.|+|+++++.....  .|..+|..+++....... .......++..+++..+++-..++.|..+|....+. 
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEe
Confidence            3567899999999777664432  466677777664322221 122345566656555555555678888888753211 


Q ss_pred             eeEE-------ee-CCCCCeeEEEECCCCCEEEEeccc---EEEEEeCC-ce--EEEEeecCcccEEEEEECCCCceEEE
Q psy12456         85 FKTL-------QL-DPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQ-WQ--ELAMFNEHTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus        85 ~~~~-------~~-~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~-~~--~~~~~~~h~~~v~~~~~s~~~~~l~s  150 (162)
                      +...       .. ........+  +|++.++..+...   +.++.... ..  ....+... .....+++.++++++++
T Consensus       152 v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi~vd~dG~l~va  228 (306)
T 2p4o_A          152 IWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDFAFDVEGNLYGA  228 (306)
T ss_dssp             EEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSEEEBTTCCEEEE
T ss_pred             EEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCeEECCCCCEEEE
Confidence            1100       00 011123444  7777766555432   44555432 11  11111111 23456788888888777


Q ss_pred             eecCCeEEEee
Q psy12456        151 SSMDRTLKLYS  161 (162)
Q Consensus       151 ~s~D~~i~iw~  161 (162)
                      ....+.|..++
T Consensus       229 ~~~~~~V~~~~  239 (306)
T 2p4o_A          229 THIYNSVVRIA  239 (306)
T ss_dssp             CBTTCCEEEEC
T ss_pred             eCCCCeEEEEC
Confidence            76667777765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.20  E-value=0.032  Score=40.22  Aligned_cols=148  Identities=6%  Similarity=-0.026  Sum_probs=80.9

Q ss_pred             EEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEE-EEeCC-CeEEEEEcccCcceeE
Q psy12456         11 LTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLA-TAADE-NCVKLWDLRKLKNFKT   87 (162)
Q Consensus        11 v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d-~~v~~wd~~~~~~~~~   87 (162)
                      ...+++.+ .++++.+-...+.|.+.+++.......+.........++++|.+..|. +-... +.|...++.... ...
T Consensus       118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~  196 (349)
T 3v64_C          118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRI  196 (349)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred             ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEE
Confidence            45678887 566666666678999999875433333333334568999998655444 44444 678777765322 111


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      +..........++++|++..|..+...   +..++.........+........++++ ..+..+.+-...+.|...
T Consensus       197 ~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~  271 (349)
T 3v64_C          197 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSA  271 (349)
T ss_dssp             SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEE
T ss_pred             EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEE
Confidence            111122346789999876655555432   444443322111122223344566666 344455554445555544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.19  E-value=0.036  Score=40.53  Aligned_cols=149  Identities=5%  Similarity=-0.031  Sum_probs=81.4

Q ss_pred             EEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe-CC-CeEEEEEcccCcceeE
Q psy12456         11 LTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA-DE-NCVKLWDLRKLKNFKT   87 (162)
Q Consensus        11 v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d-~~v~~wd~~~~~~~~~   87 (162)
                      ...+++.+ .+.++.+-...+.|.+.+++.......+.........++++|.+.+|.... .. +.|...++.... ...
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~  239 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRI  239 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEE
Confidence            34577776 556666666678888888865433333333334568999998665555444 34 677777765322 222


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEe--CCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +..........++++|++..|..+... .+|+.+  ........+........++++ ..+..+.+-...+.|..++
T Consensus       240 ~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence            211122336789999876655555433 344333  221112122223344566776 3445555555556665544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.17  E-value=0.018  Score=42.97  Aligned_cols=108  Identities=10%  Similarity=0.221  Sum_probs=71.2

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe------------eeeeccC------CCCCEEEEEEccC---CCEEEEE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK------------NVTDFQL------DAGPIQALSFSEN---GYYLATA   68 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~------------~~~~~~~------~~~~v~~i~~~~~---~~~l~s~   68 (162)
                      .|..+..+|+|+++|.-+. ..|.|-.+..+.            ..+.++.      ...+|..+-|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            4567899999999998865 578888886321            1123332      2467999999994   5688888


Q ss_pred             eCCCeEEEEEcccCccee-E-------Eee-CCCCCeeEEEECCCCCEEEE--ecccEEEE
Q psy12456         69 ADENCVKLWDLRKLKNFK-T-------LQL-DPNYEIRDLCFDQSGTYMAV--AGTDVRVF  118 (162)
Q Consensus        69 ~~d~~v~~wd~~~~~~~~-~-------~~~-~~~~~v~~~~~~~~~~~~~~--~~~~~~i~  118 (162)
                      ..|++|++||+....... .       +.. .....+.++||.+++-.+-.  ......||
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY  206 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF  206 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence            999999999997522111 1       111 01145889999998765544  33444444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.11  E-value=0.051  Score=40.81  Aligned_cols=103  Identities=9%  Similarity=0.089  Sum_probs=58.7

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee--eeeccC------CCCCEEEEEEccC----CCEEEEEeC------
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN--VTDFQL------DAGPIQALSFSEN----GYYLATAAD------   70 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~--~~~~~~------~~~~v~~i~~~~~----~~~l~s~~~------   70 (162)
                      .....++|.|+|.++++-...+.|++++...++.  +..+..      ..+....|+|+|+    +.+.++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            3456899999999887655555799888654432  333321      2356779999995    444444432      


Q ss_pred             ------CCeEEEEEcccC-------ccee-EEeeCCCCCeeEEEECCCCCEEEEe
Q psy12456         71 ------ENCVKLWDLRKL-------KNFK-TLQLDPNYEIRDLCFDQSGTYMAVA  111 (162)
Q Consensus        71 ------d~~v~~wd~~~~-------~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~  111 (162)
                            ...|.-|++...       +.+. .+..........+.|.|+|.+.++.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~  161 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI  161 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE
Confidence                  123444444221       1111 1111112236889999999876653

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.11  E-value=0.05  Score=40.60  Aligned_cols=103  Identities=13%  Similarity=0.239  Sum_probs=67.3

Q ss_pred             ccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCC--CC-CeeEEEECCCCCEEEEeccc-EEEEEeCCc----e------
Q psy12456         59 SENGYYLATAADENCVKLWDLRKLKNFKTLQLDP--NY-EIRDLCFDQSGTYMAVAGTD-VRVFLCKQW----Q------  124 (162)
Q Consensus        59 ~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~--~~-~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~----~------  124 (162)
                      +.++..++.+-+ +.||.-++......+.+....  .. .+..+..+|+|.++|..+.. +.|..+...    .      
T Consensus        29 ~~n~t~i~~a~~-n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~  107 (452)
T 3pbp_A           29 SQNGTRIVFIQD-NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQD  107 (452)
T ss_dssp             ETTTTEEEEEET-TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHH
T ss_pred             EcCCCEEEEEEC-CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccc
Confidence            345555555443 678877776433344444432  23 57889999999999997665 777664311    0      


Q ss_pred             --EEEEeec------CcccEEEEEECCCC---ceEEEeecCCeEEEeeC
Q psy12456        125 --ELAMFNE------HTAMVTGVRFGTHA---HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       125 --~~~~~~~------h~~~v~~~~~s~~~---~~l~s~s~D~~i~iw~~  162 (162)
                        ..+.+.-      ...+|..+.|+|-+   ..|+.-..|++||+||+
T Consensus       108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl  156 (452)
T 3pbp_A          108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDI  156 (452)
T ss_dssp             TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEET
T ss_pred             ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEc
Confidence              1223321      24679999999964   57888889999999996

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.10  E-value=0.043  Score=39.83  Aligned_cols=131  Identities=15%  Similarity=0.325  Sum_probs=82.8

Q ss_pred             CCcEEEEECC-CCeeeeeccC-------CCCCEEEEEE--ccC-CC-EEEEEeCCCeEEEEEccc-------CcceeEEe
Q psy12456         29 DSQVQIWDLK-KQKNVTDFQL-------DAGPIQALSF--SEN-GY-YLATAADENCVKLWDLRK-------LKNFKTLQ   89 (162)
Q Consensus        29 dg~i~~wd~~-~~~~~~~~~~-------~~~~v~~i~~--~~~-~~-~l~s~~~d~~v~~wd~~~-------~~~~~~~~   89 (162)
                      +++|++|++. ..+.+..+..       ....+..+++  +|. +. +++....++.+..|++..       .+.++++.
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            5889999663 2223444421       1134566787  774 43 688888899999999832       23456665


Q ss_pred             eCCCCCeeEEEECCCCCEEEEecccEEEEEeC-------CceEEEEee-cC-cccEEEEEE--CCCCc-eE-EEeecCCe
Q psy12456         90 LDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK-------QWQELAMFN-EH-TAMVTGVRF--GTHAH-YL-ASSSMDRT  156 (162)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~~~~~~~-~h-~~~v~~~~~--s~~~~-~l-~s~s~D~~  156 (162)
                      ...  .+..|...+....|..+-.+.-||.+.       +.+.+..+. ++ ...+.+|++  .++++ +| +|+-.+.+
T Consensus       178 lgs--q~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          178 MNS--QTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             CSS--CEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             CCC--CcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            543  577888888878888888876677654       233444442 22 236888887  45555 45 44446778


Q ss_pred             EEEee
Q psy12456        157 LKLYS  161 (162)
Q Consensus       157 i~iw~  161 (162)
                      ..+||
T Consensus       256 ~~Vyd  260 (355)
T 3amr_A          256 YAIYD  260 (355)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88886

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.10  E-value=0.0023  Score=49.48  Aligned_cols=80  Identities=13%  Similarity=0.042  Sum_probs=51.7

Q ss_pred             CCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCE
Q psy12456         28 SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTY  107 (162)
Q Consensus        28 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  107 (162)
                      .+|.+..||+++++.+.+++... ++.+..+...+..++.++.|+.+.++|.++.+.+-+++.........+.+..+++.
T Consensus       442 ~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~  520 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ  520 (571)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEE
Confidence            35789999999998887765332 22222233346678889999999999999888776665433221223344455553


Q ss_pred             E
Q psy12456        108 M  108 (162)
Q Consensus       108 ~  108 (162)
                      +
T Consensus       521 y  521 (571)
T 2ad6_A          521 Y  521 (571)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.056  Score=41.09  Aligned_cols=149  Identities=10%  Similarity=0.097  Sum_probs=85.0

Q ss_pred             cEEEEEeCCC--CcEEEEeeCCCcEEEEECCCCeeeeeccCC---CCCEEEEEE-------ccCCCEEEEEeCCC-----
Q psy12456         10 TLTTAQLHPD--GLIFGIGTSDSQVQIWDLKKQKNVTDFQLD---AGPIQALSF-------SENGYYLATAADEN-----   72 (162)
Q Consensus        10 ~v~~~~~~~~--g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~---~~~v~~i~~-------~~~~~~l~s~~~d~-----   72 (162)
                      ....+++.|+  ++++++-...+.|++.|+.++.........   ......|+|       ++++.+|..+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4678999983  667766666678999999877665444322   234789999       99998676666543     


Q ss_pred             --eEEEEEccc-Ccce-----eEE-eeCCCCCeeEEEECCC-CCEEEEecccEEE--EEeC-------CceE--------
Q psy12456         73 --CVKLWDLRK-LKNF-----KTL-QLDPNYEIRDLCFDQS-GTYMAVAGTDVRV--FLCK-------QWQE--------  125 (162)
Q Consensus        73 --~v~~wd~~~-~~~~-----~~~-~~~~~~~v~~~~~~~~-~~~~~~~~~~~~i--~~~~-------~~~~--------  125 (162)
                        .+.+.+-.. .+..     ..+ ...   ....++++|+ +.+.++-..+.+|  ++..       ....        
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~---~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYK---QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEES---CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             CceEEEEecCCCCceeecccceeeccCC---CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence              244454222 0110     111 111   2356788995 4444444334334  3433       1111        


Q ss_pred             ---EEE-ee-cCcccEEEEEECCCCce-EEEeecCCeEEEee
Q psy12456        126 ---LAM-FN-EHTAMVTGVRFGTHAHY-LASSSMDRTLKLYS  161 (162)
Q Consensus       126 ---~~~-~~-~h~~~v~~~~~s~~~~~-l~s~s~D~~i~iw~  161 (162)
                         ... +. .....-..++|+|+++. +++=+..+.|+.++
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid  338 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD  338 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence               111 11 22344678999999984 55556667777643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.09  E-value=0.0083  Score=46.50  Aligned_cols=132  Identities=15%  Similarity=0.188  Sum_probs=76.3

Q ss_pred             CCC---cEEEEeeCCCcEEEEECCCCeeeeeccCCC-------------CCE----------------------------
Q psy12456         18 PDG---LIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-------------GPI----------------------------   53 (162)
Q Consensus        18 ~~g---~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~-------------~~v----------------------------   53 (162)
                      .+|   .+++.++.+|.+.++|.++++.+..++...             .++                            
T Consensus       331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~G  410 (582)
T 1flg_A          331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLG  410 (582)
T ss_dssp             SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTC
T ss_pred             CCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCcc
Confidence            466   378889999999999999998876554321             000                            


Q ss_pred             ----EEEEEccCCCEEEEEe---------------------------------CCCeEEEEEcccCcceeEEeeCCCCCe
Q psy12456         54 ----QALSFSENGYYLATAA---------------------------------DENCVKLWDLRKLKNFKTLQLDPNYEI   96 (162)
Q Consensus        54 ----~~i~~~~~~~~l~s~~---------------------------------~d~~v~~wd~~~~~~~~~~~~~~~~~v   96 (162)
                          ..++++|+...+....                                 .++.|..||+++.+.+=+.....  +.
T Consensus       411 g~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~  488 (582)
T 1flg_A          411 GKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PL  488 (582)
T ss_dssp             SSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CC
T ss_pred             ccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CC
Confidence                1346676554444332                                 25789999998876543333221  12


Q ss_pred             eEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccE-EEEEECCCCc-eEEEe
Q psy12456         97 RDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMV-TGVRFGTHAH-YLASS  151 (162)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v-~~~~~s~~~~-~l~s~  151 (162)
                      ..-.+...+.++..++.|  ++.++.++.+.+-+++...... .-+.|..+++ +++..
T Consensus       489 ~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~  547 (582)
T 1flg_A          489 WAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             CSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             cccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence            111112234455567666  6677777787776666443321 2255655665 55443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.05  E-value=0.0022  Score=49.69  Aligned_cols=82  Identities=18%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC-E
Q psy12456         29 DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT-Y  107 (162)
Q Consensus        29 dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~  107 (162)
                      +|.|.-||+++++.+-+.+... ++..-.....+.+++.++.|+.++.||.++.+.+-+++.........+.+..+|+ |
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence            6889999999999876665332 2211112224668888999999999999998877666654332223456666665 5


Q ss_pred             EEEe
Q psy12456        108 MAVA  111 (162)
Q Consensus       108 ~~~~  111 (162)
                      +++.
T Consensus       544 v~~~  547 (582)
T 1flg_A          544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.05  E-value=0.045  Score=39.03  Aligned_cols=150  Identities=12%  Similarity=0.070  Sum_probs=85.2

Q ss_pred             EEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeee-eeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCcceeE
Q psy12456         11 LTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        11 v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      ..+++|++ ++.++.+-..++.|..++++.+... ..+.........+++.+ .+.++++-...+.|.++++..... ..
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~  115 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-KV  115 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-EE
Confidence            45788888 4666666667788999998765321 11222223456789987 455555555677899999864222 22


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEec-c-cEEEEEeCC-ceEEEE-eecCcccEEEEEECCCCc-eEEEeecCCeEEEee
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAG-T-DVRVFLCKQ-WQELAM-FNEHTAMVTGVRFGTHAH-YLASSSMDRTLKLYS  161 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~-~-~~~i~~~~~-~~~~~~-~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iw~  161 (162)
                      +..........+++.|.+.++..+. . ..+|+.... ...... ....-..-.+++++|++. +..+=+..+.|..++
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            2212233468899998654444443 2 344444321 111112 222334568899997544 445555566676665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.04  E-value=0.0076  Score=47.20  Aligned_cols=136  Identities=8%  Similarity=0.005  Sum_probs=72.2

Q ss_pred             CCCcEEEEeeCCC---------cEEEEECCCCeeeeeccCCC---------CCEEEEEEcc-CCCEEEEEeCCC------
Q psy12456         18 PDGLIFGIGTSDS---------QVQIWDLKKQKNVTDFQLDA---------GPIQALSFSE-NGYYLATAADEN------   72 (162)
Q Consensus        18 ~~g~~~a~g~~dg---------~i~~wd~~~~~~~~~~~~~~---------~~v~~i~~~~-~~~~l~s~~~d~------   72 (162)
                      .++.+++.|+.+|         .+..||..+.+.......+.         ..-.++.+.. +++.++.|+.+.      
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~  427 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  427 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence            4556666665554         45778887765332221111         1123444543 677788887532      


Q ss_pred             -----eEEEEEcccCcceeEE--eeCCCCCeeEEEECCCCCEEEEeccc-------------EEEEEeC--CceEEEEee
Q psy12456         73 -----CVKLWDLRKLKNFKTL--QLDPNYEIRDLCFDQSGTYMAVAGTD-------------VRVFLCK--QWQELAMFN  130 (162)
Q Consensus        73 -----~v~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~-------------~~i~~~~--~~~~~~~~~  130 (162)
                           .+.+||..+.+-....  .......-.+.+..|++++++.|+.+             +.+|+..  +|..+....
T Consensus       428 ~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~  507 (656)
T 1k3i_A          428 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS  507 (656)
T ss_dssp             CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred             CCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC
Confidence                 5777887643321111  11111112445667899999998732             4566643  344433222


Q ss_pred             cCcccEEEEEECCCCceEEEeec
Q psy12456        131 EHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus       131 ~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                      .....-....+.|+++.++.|+.
T Consensus       508 ~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          508 IVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             SCCCTTEEEEECTTSCEEEEECC
T ss_pred             CccccccHhhcCCCcEEEecCCC
Confidence            21122233446789999999885

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.00  E-value=0.093  Score=41.93  Aligned_cols=147  Identities=10%  Similarity=0.040  Sum_probs=90.4

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc----CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ----LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      ...|.++...++|.++-.|+.++-+..||.++++...-..    .....|.++...+++.+.+. ..+| +..||..+.+
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~~  482 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLSA-LVRFNPEQRS  482 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESSC-EEEEETTTTE
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecCc-eeEEeCCCCe
Confidence            4568888888899844457776779999988765432211    22457999998888875544 4444 8888876533


Q ss_pred             ceeEEeeC------CCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEee-------cCcccEEEEEECCCCceEEE
Q psy12456         84 NFKTLQLD------PNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN-------EHTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus        84 ~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-------~h~~~v~~~~~s~~~~~l~s  150 (162)
                      . ..+...      ....|.++...+++.+.+.....+..++....+.  .+.       .....|.++...+++++.++
T Consensus       483 ~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig  559 (795)
T 4a2l_A          483 F-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGEEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG  559 (795)
T ss_dssp             E-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEESSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE
T ss_pred             E-EEccccccccccCCceEEEEEECCCCCEEEEeCCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE
Confidence            2 211110      1245888888888876655544455555544332  221       13456889988888886654


Q ss_pred             eecCCeEEEee
Q psy12456        151 SSMDRTLKLYS  161 (162)
Q Consensus       151 ~s~D~~i~iw~  161 (162)
                      .. .| +..||
T Consensus       560 T~-~G-l~~~d  568 (795)
T 4a2l_A          560 TR-EG-FYCFN  568 (795)
T ss_dssp             ES-SC-EEEEE
T ss_pred             eC-CC-ceeEC
Confidence            43 33 44443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.99  E-value=0.0031  Score=49.92  Aligned_cols=151  Identities=13%  Similarity=0.042  Sum_probs=79.7

Q ss_pred             cEEEEEeCCCC-cEEEEeeCCCcEEEEECCC----CeeeeeccCCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcccCc
Q psy12456         10 TLTTAQLHPDG-LIFGIGTSDSQVQIWDLKK----QKNVTDFQLDAGPIQALSFSEN-GYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus        10 ~v~~~~~~~~g-~~~a~g~~dg~i~~wd~~~----~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .+..++|++++ .++.+-...+.|+.+++..    ......+.........|++.+. ++++++-...+.|.+.++....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            44567888854 4555555668899999875    2222222211223456888854 4455554566789998876432


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEecc-c-EEEEEeCC-ceEEEEe-ecCcccEEEEEECCCC-ceEEEeecCCeEE
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-D-VRVFLCKQ-WQELAMF-NEHTAMVTGVRFGTHA-HYLASSSMDRTLK  158 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~-~~i~~~~~-~~~~~~~-~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~  158 (162)
                       ...+........+.+++.|.+.+|..+.. . .+|+.... ......+ ...-....+|+|+|++ +++++-+..+.|.
T Consensus       487 -~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~  565 (699)
T 1n7d_A          487 -RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS  565 (699)
T ss_dssp             -EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred             -eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence             22221111223577889886544433332 2 34443221 1111111 1222345679999864 4555555666777


Q ss_pred             Eee
Q psy12456        159 LYS  161 (162)
Q Consensus       159 iw~  161 (162)
                      .++
T Consensus       566 ~~d  568 (699)
T 1n7d_A          566 SID  568 (699)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.97  E-value=0.053  Score=38.65  Aligned_cols=141  Identities=11%  Similarity=0.154  Sum_probs=79.6

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeec-cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc--ccCccee
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF-QLDAGPIQALSFSENGYYLATAADENCVKLWDL--RKLKNFK   86 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~--~~~~~~~   86 (162)
                      .+..+.+.+++.+++++. +|.|.. ..+.++.-... ......+..+++.+++.+++.+......+-+|-  .+++.+ 
T Consensus       123 ~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~-  199 (327)
T 2xbg_A          123 SPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH-  199 (327)
T ss_dssp             CEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE-
T ss_pred             CeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC-
Confidence            356777777788887765 454322 22234322222 234457889999999888877765554555553  333332 


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEecccEEEEEe-CC-ceEEEEee----cCcccEEEEEECCCCceEEEeecCCeE
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLC-KQ-WQELAMFN----EHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~-~~-~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                        .......+..+.+.+++..++.+... .++.. .. .+....+.    .+...+..+.+.|++..++.+. ++.+
T Consensus       200 --~~~~~~~~~~~~~~~~g~~~~~~~~G-~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          200 --NRTTSRRLHNMGFTPDGRLWMIVNGG-KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL  272 (327)
T ss_dssp             --ECCSSSCEEEEEECTTSCEEEEETTT-EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred             --CCCCCCccceeEECCCCCEEEEeCCc-eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence              22223457888899988877665432 23322 11 22222221    1223588899988777776553 5655

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.93  E-value=0.063  Score=38.91  Aligned_cols=141  Identities=12%  Similarity=0.125  Sum_probs=78.0

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee--eeecc----CCCCCEEEEEEccC----CCEEEEEe--CCCeEEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN--VTDFQ----LDAGPIQALSFSEN----GYYLATAA--DENCVKL   76 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~--~~~~~----~~~~~v~~i~~~~~----~~~l~s~~--~d~~v~~   76 (162)
                      .....+++.|||.++++--..|.|++++.+.++.  +..+.    ...+....|+++|+    +...++-+  .+..|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            3457899999999887766589999998765543  22221    22356789999995    44444322  3344544


Q ss_pred             EEcccC-----c--cee----EEeeCCCCCeeEEEECCCCCEEEEecc-------------cEEEEEeCCceE-------
Q psy12456         77 WDLRKL-----K--NFK----TLQLDPNYEIRDLCFDQSGTYMAVAGT-------------DVRVFLCKQWQE-------  125 (162)
Q Consensus        77 wd~~~~-----~--~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~-------  125 (162)
                      |.+...     .  ...    .+..........+.|.|+|.+.++.+.             ..+|+-++....       
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf  191 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPF  191 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCC
Confidence            554331     1  111    111111122467899999987666431             134443332111       


Q ss_pred             --EEEee-cCcccEEEEEECCCCceEEE
Q psy12456        126 --LAMFN-EHTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus       126 --~~~~~-~h~~~v~~~~~s~~~~~l~s  150 (162)
                        ...+. +| .....++|.|+++++++
T Consensus       192 ~~~~i~a~G~-RNp~Gla~dp~G~L~~~  218 (347)
T 3das_A          192 PGSPVYSYGH-RNVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             TTCCEEEBCC-SBCCEEEECTTCCEEEE
T ss_pred             CCCeEEeeCC-CCcceEEECCCCCEEEE
Confidence              01122 33 23567899998877764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.93  E-value=0.0035  Score=49.32  Aligned_cols=84  Identities=14%  Similarity=0.227  Sum_probs=57.0

Q ss_pred             CCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC-
Q psy12456         28 SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT-  106 (162)
Q Consensus        28 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  106 (162)
                      .+|.|..||+++++.+..++.+. +.....+...+.+++.++.|+.+++||.++.+.+-.++.........+.+..+|+ 
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~  514 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence            34889999999999887766432 2333344456788999999999999999988877666654322223445545554 


Q ss_pred             EEEEec
Q psy12456        107 YMAVAG  112 (162)
Q Consensus       107 ~~~~~~  112 (162)
                      |++.++
T Consensus       515 yva~~~  520 (668)
T 1kv9_A          515 YVAIMA  520 (668)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            565554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.92  E-value=0.11  Score=41.40  Aligned_cols=146  Identities=10%  Similarity=0.146  Sum_probs=85.7

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeec---cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF---QLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      ....|.++...++|.+.+ |+.++-+..||..+++...-.   ......|.++...+++.+. .|..++-+..+|.++.+
T Consensus       361 ~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~  438 (781)
T 3v9f_A          361 SNKVVSSVCDDGQGKLWI-GTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKK  438 (781)
T ss_dssp             SSSCEEEEEECTTSCEEE-EEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCE
T ss_pred             CCcceEEEEEcCCCCEEE-EeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCc
Confidence            345689999999888774 555555888997654332111   1223568888888777644 46666668888875432


Q ss_pred             ceeEEee--CCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEEEeecC-----cccEEEEEECCCCceEEEeecCC
Q psy12456         84 NFKTLQL--DPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEH-----TAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        84 ~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                       +..+..  .....|.++...+++.+.+.....+..++....+........     ...|.++...+++.+.+....+|
T Consensus       439 -~~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G  516 (781)
T 3v9f_A          439 -FQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG  516 (781)
T ss_dssp             -EEECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred             -EEEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence             222211  123458888888888765554433555554332211111111     35688898888888766443344

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.55  E-value=0.13  Score=37.09  Aligned_cols=113  Identities=13%  Similarity=0.154  Sum_probs=73.5

Q ss_pred             CCCCCcEEEEEe---CCCCcEEEEee-------------CCCcEEEEECC---CCeeeeeccC-------------CCCC
Q psy12456          5 GAGGPTLTTAQL---HPDGLIFGIGT-------------SDSQVQIWDLK---KQKNVTDFQL-------------DAGP   52 (162)
Q Consensus         5 ~~~~~~v~~~~~---~~~g~~~a~g~-------------~dg~i~~wd~~---~~~~~~~~~~-------------~~~~   52 (162)
                      |.+...+..+.+   .|+|.++++..             .+..+..||+.   +++.+.....             ....
T Consensus        59 g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~  138 (334)
T 2p9w_A           59 GDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFG  138 (334)
T ss_dssp             SCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEE
T ss_pred             CCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccC
Confidence            334445688999   68888888644             26779999998   7766543321             1124


Q ss_pred             EEEEEEccCCCEEEEEeCC-CeEEEEEcccCcceeEEeeCC-----CCCeeEEEECCCCCEEEEecccEEEE
Q psy12456         53 IQALSFSENGYYLATAADE-NCVKLWDLRKLKNFKTLQLDP-----NYEIRDLCFDQSGTYMAVAGTDVRVF  118 (162)
Q Consensus        53 v~~i~~~~~~~~l~s~~~d-~~v~~wd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~i~  118 (162)
                      ...|+..++|+..++++.. +.|...+... +.+..+....     ......++++|++..|++.....+++
T Consensus       139 ~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~  209 (334)
T 2p9w_A          139 VVQSAQDRDGNSYVAFALGMPAIARVSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALT  209 (334)
T ss_dssp             EEEEEECTTSCEEEEEEESSCEEEEECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEE
T ss_pred             CceeEECCCCCEEEeCCCCCCeEEEEeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEE
Confidence            7899999999999988877 6655555432 2222222111     12256889999998888876564444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.54  E-value=0.012  Score=45.79  Aligned_cols=83  Identities=10%  Similarity=0.052  Sum_probs=53.8

Q ss_pred             CCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC-
Q psy12456         28 SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT-  106 (162)
Q Consensus        28 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  106 (162)
                      .+|.+.-||+++++.+-+.+.. .+..+-.+...+.+++.++.|+.++.||.++.+.+-+++.........+.+..+|+ 
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            3578999999999887766432 12111112235677888999999999999998877666654332234455656664 


Q ss_pred             EEEEe
Q psy12456        107 YMAVA  111 (162)
Q Consensus       107 ~~~~~  111 (162)
                      |+++.
T Consensus       530 yv~~~  534 (599)
T 1w6s_A          530 YVAIY  534 (599)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            45443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.51  E-value=0.23  Score=39.62  Aligned_cols=149  Identities=11%  Similarity=0.088  Sum_probs=89.2

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeec--cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF--QLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      ...|.++...++|.+.+ |+.++-+..+|.++++...-.  ......|.++...+++.+ ..|.. +-+..||..+.+..
T Consensus       406 ~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~  482 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVI  482 (781)
T ss_dssp             CSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCC
T ss_pred             CcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEE
Confidence            45688888888888776 666666889998766543221  123467999988887764 44555 45888887654322


Q ss_pred             eEEeeC----CCCCeeEEEECCCCCEEEEec-ccEEEEEeCCceEEEEeec----CcccEEEEEECCCCceEEEeecCCe
Q psy12456         86 KTLQLD----PNYEIRDLCFDQSGTYMAVAG-TDVRVFLCKQWQELAMFNE----HTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        86 ~~~~~~----~~~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~----h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      ......    ....+.++...++|.+.+... ..+..++.... .+..+..    ....|.++...+++.+.++.. +|-
T Consensus       483 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Gl  560 (781)
T 3v9f_A          483 HHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ-LVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGL  560 (781)
T ss_dssp             EEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCC-EEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEE
T ss_pred             ecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC-eEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCc
Confidence            211111    124588898888887665543 33444433222 3333321    234688888888888666443 554


Q ss_pred             EEEee
Q psy12456        157 LKLYS  161 (162)
Q Consensus       157 i~iw~  161 (162)
                      +..||
T Consensus       561 v~~~d  565 (781)
T 3v9f_A          561 VCFPS  565 (781)
T ss_dssp             EEESC
T ss_pred             eEEEC
Confidence            35443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.50  E-value=0.13  Score=37.15  Aligned_cols=100  Identities=14%  Similarity=0.189  Sum_probs=55.3

Q ss_pred             cEEEEEeCCCCc-EEEEeeCCCcEEEEECCCCee---eeecc----CCCCCEEEEEEccC----CCEEEEEeC-------
Q psy12456         10 TLTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQKN---VTDFQ----LDAGPIQALSFSEN----GYYLATAAD-------   70 (162)
Q Consensus        10 ~v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~~~---~~~~~----~~~~~v~~i~~~~~----~~~l~s~~~-------   70 (162)
                      ....+++.|+|+ +++ +...|.|++++.. ++.   +..+.    ........|+++|+    +...++-..       
T Consensus        19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            346889999999 665 4567999999854 332   22121    12345689999995    444444332       


Q ss_pred             CCeEEEEEcccC----cceeE-EeeCC-----CCCeeEEEECCCCCEEEEe
Q psy12456         71 ENCVKLWDLRKL----KNFKT-LQLDP-----NYEIRDLCFDQSGTYMAVA  111 (162)
Q Consensus        71 d~~v~~wd~~~~----~~~~~-~~~~~-----~~~v~~~~~~~~~~~~~~~  111 (162)
                      ...|.-|++...    ..... +..-+     ......+.|.|+|.+.++-
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence            124555555321    11111 11101     1124579999999665553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.39  E-value=0.096  Score=40.80  Aligned_cols=30  Identities=17%  Similarity=0.126  Sum_probs=24.6

Q ss_pred             CCC---cEEEEeeCCCcEEEEECCCCeeeeecc
Q psy12456         18 PDG---LIFGIGTSDSQVQIWDLKKQKNVTDFQ   47 (162)
Q Consensus        18 ~~g---~~~a~g~~dg~i~~wd~~~~~~~~~~~   47 (162)
                      .+|   .+++.++.+|.+.++|.++++.+...+
T Consensus       318 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          318 KDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             TTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence            467   578889999999999999998876554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.38  E-value=0.18  Score=37.05  Aligned_cols=151  Identities=9%  Similarity=-0.012  Sum_probs=84.8

Q ss_pred             CcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe-C-CCeEEEEEcccCcce
Q psy12456          9 PTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA-D-ENCVKLWDLRKLKNF   85 (162)
Q Consensus         9 ~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~-d~~v~~wd~~~~~~~   85 (162)
                      .....+++.+ .++++.+-...+.|.+.+++.......+.........|+++|.+.+|.... . .+.|...++..... 
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-  237 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-  237 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-
Confidence            4567788887 677777777788999999876544433433344578999999655555554 2 36777777753222 


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEee--cCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFN--EHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ..+..........+++++++..|..+...   +..++.+.........  ..-....+++.. .+..+.+-...+.|..+
T Consensus       238 ~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~  316 (400)
T 3p5b_L          238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  316 (400)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred             EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence            22211222346889999877666665433   4444443221111112  122334455552 34444555445555554


Q ss_pred             e
Q psy12456        161 S  161 (162)
Q Consensus       161 ~  161 (162)
                      +
T Consensus       317 ~  317 (400)
T 3p5b_L          317 N  317 (400)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.38  E-value=0.038  Score=43.78  Aligned_cols=101  Identities=12%  Similarity=0.003  Sum_probs=57.3

Q ss_pred             EEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe-CC-CeEEEEEcccCcceeE
Q psy12456         11 LTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA-DE-NCVKLWDLRKLKNFKT   87 (162)
Q Consensus        11 v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d-~~v~~wd~~~~~~~~~   87 (162)
                      ...+++.+ .++++.+-...+.|.++++........+.........|+++|.+.+|..+. .. +.|...++.... ...
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~  533 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYS  533 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeE
Confidence            45678885 566666666678899999876543333332223446789998655444443 22 567776664221 111


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEec
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~  112 (162)
                      +..........++++|++..|..+.
T Consensus       534 l~~~~l~~PnGlavd~~~~~LY~aD  558 (699)
T 1n7d_A          534 LVTENIQWPNGITLDLLSGRLYWVD  558 (699)
T ss_dssp             ESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred             EEeCCCCCccEEEEeccCCEEEEEe
Confidence            1111122356789998755444443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.33  E-value=0.16  Score=35.91  Aligned_cols=150  Identities=9%  Similarity=-0.035  Sum_probs=83.5

Q ss_pred             cEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC-C-CeEEEEEcccCccee
Q psy12456         10 TLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD-E-NCVKLWDLRKLKNFK   86 (162)
Q Consensus        10 ~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-d-~~v~~wd~~~~~~~~   86 (162)
                      ....+++.+ +++++.+-..++.|.++|++.......+.........++++|.+..|..+.. . +.|...++.. +...
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~  156 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIY  156 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeE
Confidence            346778886 5566666667889999998754333223323345689999986655554443 3 6787777643 2222


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCc--eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQW--QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .+..........++++|++..|..+...   +..++.+..  ..+......-....++++. .+..+.+-...+.|..++
T Consensus       157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~  235 (316)
T 1ijq_A          157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN  235 (316)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEe
Confidence            2211222346789999877666555432   444444321  1121111122335566664 355555555566666554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.21  E-value=0.27  Score=37.39  Aligned_cols=69  Identities=19%  Similarity=0.220  Sum_probs=46.6

Q ss_pred             EEEEeCC-CCcEEEEeeCCCcEEEEECC-------CCee-----------eee-ccC-CCCCEEEEEEccCCCEEEEE-e
Q psy12456         12 TTAQLHP-DGLIFGIGTSDSQVQIWDLK-------KQKN-----------VTD-FQL-DAGPIQALSFSENGYYLATA-A   69 (162)
Q Consensus        12 ~~~~~~~-~g~~~a~g~~dg~i~~wd~~-------~~~~-----------~~~-~~~-~~~~v~~i~~~~~~~~l~s~-~   69 (162)
                      ..++++| ++.++++-..++.|..+|+.       +++.           ... +.. ....-+.|+|+|++++|..+ .
T Consensus       250 ~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~  329 (496)
T 3kya_A          250 NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI  329 (496)
T ss_dssp             CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred             eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeC
Confidence            5678899 67777777788999999987       4442           111 221 22345789999999954444 4


Q ss_pred             CCCeEEEEEcc
Q psy12456         70 DENCVKLWDLR   80 (162)
Q Consensus        70 ~d~~v~~wd~~   80 (162)
                      ..+.|+.++..
T Consensus       330 ~~h~I~kid~d  340 (496)
T 3kya_A          330 NNHYFMRSDYD  340 (496)
T ss_dssp             TTTEEEEEEEE
T ss_pred             CCCEEEEEecC
Confidence            66788886653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.14  E-value=0.21  Score=35.48  Aligned_cols=149  Identities=5%  Similarity=-0.061  Sum_probs=80.1

Q ss_pred             EEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC--CCeEEEEEcccCcceeE
Q psy12456         11 LTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD--ENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        11 v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~--d~~v~~wd~~~~~~~~~   87 (162)
                      ...+++.+ .++++.+-...+.|.+++++.......+.........++++|.+.+|..+..  .+.|...++.... ...
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~  159 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFI  159 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEE
Confidence            34577876 5666666667789999998754332222233345689999986555555552  4677777765322 222


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      +..........++++|++..|..+...   +..++.+................++++.. +..+.+-...+.|..++
T Consensus       160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACN  235 (318)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEE
Confidence            211122346789999876666555433   44444332111111222233445566532 34444444455555443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.09  E-value=0.36  Score=37.71  Aligned_cols=152  Identities=12%  Similarity=0.055  Sum_probs=83.1

Q ss_pred             CcEEEEEeCCC-CcEEEEeeCCCcEEEEECCCCee-eeeccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcccCcce
Q psy12456          9 PTLTTAQLHPD-GLIFGIGTSDSQVQIWDLKKQKN-VTDFQLDAGPIQALSFSENGY-YLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         9 ~~v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      ....++++++. +.++.+-...+.|..++++.... ...+.........+++++.+. ++++-...+.|.+.++.... .
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~  118 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-R  118 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-E
Confidence            34678899984 44555555578898898875432 222333334678999998554 55555567899999986432 2


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEecc--cEEEEEeC-CceEEE-EeecCcccEEEEEECCCC-ceEEEeecCCeEEEe
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGT--DVRVFLCK-QWQELA-MFNEHTAMVTGVRFGTHA-HYLASSSMDRTLKLY  160 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~i~~~~-~~~~~~-~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iw  160 (162)
                      ..+........+.+++.|.+.++.....  ..+|+... .+.... .....-....++++.+++ +++.+=+..+.|...
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~  198 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  198 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEe
Confidence            2222122234678899886444433332  23444332 111111 122234457889998754 444444445566655


Q ss_pred             e
Q psy12456        161 S  161 (162)
Q Consensus       161 ~  161 (162)
                      +
T Consensus       199 ~  199 (619)
T 3s94_A          199 N  199 (619)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.01  E-value=0.28  Score=35.64  Aligned_cols=135  Identities=13%  Similarity=0.222  Sum_probs=79.0

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCC----C---EEEEEe-C--CCeEEEEEcc-cCcceeE
Q psy12456         19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENG----Y---YLATAA-D--ENCVKLWDLR-KLKNFKT   87 (162)
Q Consensus        19 ~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~----~---~l~s~~-~--d~~v~~wd~~-~~~~~~~   87 (162)
                      ...+++.....+-+.+||+ +++.+..+..  +.+..+...|+-    +   +++... .  +.+|.+|++. ....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            4455665666788999999 7888888764  567777777632    2   233333 3  5799999873 2222332


Q ss_pred             Eee------CCCCCeeEEEE--CCC-CC-EEEEeccc--EEEEEe-------CCceEEEEeecCcccEEEEEECCCCceE
Q psy12456         88 LQL------DPNYEIRDLCF--DQS-GT-YMAVAGTD--VRVFLC-------KQWQELAMFNEHTAMVTGVRFGTHAHYL  148 (162)
Q Consensus        88 ~~~------~~~~~v~~~~~--~~~-~~-~~~~~~~~--~~i~~~-------~~~~~~~~~~~h~~~v~~~~~s~~~~~l  148 (162)
                      ...      .....+-.+|+  +|. ++ ++.+...+  +..|.+       ...+.++++.-. ..+..+...+....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCeE
Confidence            210      11134556788  774 54 45555544  334433       123456666544 357777787776777


Q ss_pred             EEeecCCeE
Q psy12456        149 ASSSMDRTL  157 (162)
Q Consensus       149 ~s~s~D~~i  157 (162)
                      ..+-.|..|
T Consensus       195 yv~eEd~GI  203 (355)
T 3amr_A          195 YIAEEDEAI  203 (355)
T ss_dssp             EEEETTTEE
T ss_pred             EEecccceE
Confidence            677777543

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.97  E-value=0.29  Score=41.19  Aligned_cols=91  Identities=11%  Similarity=0.136  Sum_probs=54.7

Q ss_pred             cEEEEECCCCeeeeeccCCC-CCEEEEE---EccC-CCEEEEEe----------CCCeEEEEEcccCc--ceeEEeeCCC
Q psy12456         31 QVQIWDLKKQKNVTDFQLDA-GPIQALS---FSEN-GYYLATAA----------DENCVKLWDLRKLK--NFKTLQLDPN   93 (162)
Q Consensus        31 ~i~~wd~~~~~~~~~~~~~~-~~v~~i~---~~~~-~~~l~s~~----------~d~~v~~wd~~~~~--~~~~~~~~~~   93 (162)
                      .+++.|..+.+.+..++... ..+.+++   |..+ ..+++.|.          ..|.|.+|++.+.+  .+.+..  .+
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~--v~  885 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE--VK  885 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE--ES
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE--cC
Confidence            36778877777666665432 2344444   3332 46888775          24689999985332  222222  24


Q ss_pred             CCeeEEEECCCCCEEEEecccEEEEEeCCce
Q psy12456         94 YEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQ  124 (162)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~  124 (162)
                      .++.+++-- +|.+++..+..+++|.+...+
T Consensus       886 g~v~al~~~-~g~Lla~ig~~l~vy~l~~~~  915 (1158)
T 3ei3_A          886 GAVYSMVEF-NGKLLASINSTVRLYEWTTEK  915 (1158)
T ss_dssp             SCEEEEEEE-TTEEEEEETTEEEEEEECTTS
T ss_pred             CcCEEEeee-CCEEEEEcCCEEEEEECCCCc
Confidence            457776633 467777777779999886543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.72  E-value=0.19  Score=38.97  Aligned_cols=68  Identities=22%  Similarity=0.323  Sum_probs=49.0

Q ss_pred             EEEeCCCCcEEEE-eeCCCcEEEEECCCC------ee-------eeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q psy12456         13 TAQLHPDGLIFGI-GTSDSQVQIWDLKKQ------KN-------VTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD   78 (162)
Q Consensus        13 ~~~~~~~g~~~a~-g~~dg~i~~wd~~~~------~~-------~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd   78 (162)
                      .+.++|||+++++ |.-+.++.++|+++-      +.       ....+.-.+| ...+|.++|+-..+-.-|..|.-|+
T Consensus       327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP-lHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP-LHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE-EEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc-cEEEECCCCceEeeeeecceEEEEe
Confidence            3779999998755 455899999999852      11       2223333344 4679999997777777899999999


Q ss_pred             ccc
Q psy12456         79 LRK   81 (162)
Q Consensus        79 ~~~   81 (162)
                      +.+
T Consensus       406 i~~  408 (638)
T 3sbq_A          406 MEE  408 (638)
T ss_dssp             HHH
T ss_pred             ccH
Confidence            864

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.56  E-value=0.63  Score=36.38  Aligned_cols=152  Identities=9%  Similarity=0.038  Sum_probs=85.5

Q ss_pred             CcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          9 PTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSE-NGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         9 ~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      ..+.++++.+ ++.++.+-...+.|+.++++.......+.........+++++ .++.+++-...+.|.+.++.... ..
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~  427 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RK  427 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EE
Confidence            3467899998 555666666678899999876433333333334556899987 45555665667889998886432 22


Q ss_pred             EEeeCCCCCeeEEEECCC-CCEEEEecc-cEEEEEeC-Cce-EEEEeecCcccEEEEEECCCC-ceEEEeecCCeEEEee
Q psy12456         87 TLQLDPNYEIRDLCFDQS-GTYMAVAGT-DVRVFLCK-QWQ-ELAMFNEHTAMVTGVRFGTHA-HYLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~-~~~~~~~~~-~~~i~~~~-~~~-~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iw~  161 (162)
                      .+........+.+++.|. |.+..+-.. ..+|+... .+. ........-...+++++.+++ ++..+=+..+.|...+
T Consensus       428 ~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~  507 (619)
T 3s94_A          428 ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMN  507 (619)
T ss_dssp             EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEe
Confidence            222222345789999986 544444322 23444321 121 111123334567788887644 4444434445555443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.39  E-value=0.73  Score=36.08  Aligned_cols=152  Identities=9%  Similarity=0.018  Sum_probs=86.4

Q ss_pred             CcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcccCccee
Q psy12456          9 PTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY-YLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         9 ~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      ..+..++|++ ++.++.+-..++.|..++++.......+.........+++++.+. ++++-...+.|.+.++..... .
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~  115 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-Q  115 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-E
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-E
Confidence            3567899998 455666666789999999876543333332223456889987544 445555667899988854322 2


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEec-c-cEEEEEeC-CceEEEEeecCcccEEEEEECCCCc-eEEEeecCCeEEEee
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAG-T-DVRVFLCK-QWQELAMFNEHTAMVTGVRFGTHAH-YLASSSMDRTLKLYS  161 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~-~~~i~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iw~  161 (162)
                      .+........+.+++.|...+|.... . ..+|+... .......+-..-....++++.++++ ...+=...+.|...+
T Consensus       116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d  194 (628)
T 4a0p_A          116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSN  194 (628)
T ss_dssp             EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEc
Confidence            22212233468999998544443333 2 34444331 1111222222345677888887644 444444555666554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.12  E-value=1  Score=36.30  Aligned_cols=103  Identities=12%  Similarity=-0.005  Sum_probs=64.1

Q ss_pred             cEEEEEeCCCC-cEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe-CC-CeEEEEEcccCccee
Q psy12456         10 TLTTAQLHPDG-LIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA-DE-NCVKLWDLRKLKNFK   86 (162)
Q Consensus        10 ~v~~~~~~~~g-~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d-~~v~~wd~~~~~~~~   86 (162)
                      ....+++.+.+ +++.+-...+.|.+.+++.......+........+|+++|.+.+|.... .. +.|...++.... ..
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~  550 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IY  550 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eE
Confidence            44578888755 6666777788999999875543333333345578999999755555554 33 678777775322 22


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEecc
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGT  113 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~  113 (162)
                      .+..........+++.+.+..|..+..
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LYwaD~  577 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLYWVDS  577 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCCceEEEEecCCCeEEEEeC
Confidence            222222234688999977666555543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.50  E-value=0.78  Score=31.88  Aligned_cols=136  Identities=15%  Similarity=0.211  Sum_probs=67.7

Q ss_pred             CCcEEEEeeCC------CcEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeC---------CCeEEEEEccc
Q psy12456         19 DGLIFGIGTSD------SQVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAAD---------ENCVKLWDLRK   81 (162)
Q Consensus        19 ~g~~~a~g~~d------g~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~---------d~~v~~wd~~~   81 (162)
                      ++++++.|+.+      ..+.+||+.+++-...  +......-..+.+  ++..++.|+.         -..+.+||+.+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            67888888865      4588999988754332  2221111222222  5666666653         24477888865


Q ss_pred             Cc--ceeEEeeCCCCCeeEEEECCCCCEEEEecc-------cEEEEEeCC--ceEEEEeecCcccEEEEEECCCCceEEE
Q psy12456         82 LK--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-------DVRVFLCKQ--WQELAMFNEHTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus        82 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~i~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s  150 (162)
                      .+  .+..+. .... -..++.. ++++++.|+.       ++.+++..+  |..+..+.........+.+  ++++++.
T Consensus       179 ~~W~~~~~~p-~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~  253 (306)
T 3ii7_A          179 ETWTELCPMI-EARK-NHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVL  253 (306)
T ss_dssp             TEEEEECCCS-SCCB-SCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEE
T ss_pred             CeEEECCCcc-chhh-cceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEE
Confidence            32  121111 1111 1122222 5666677653       245555432  5444333221122222333  5677777


Q ss_pred             eecC-----CeEEEee
Q psy12456        151 SSMD-----RTLKLYS  161 (162)
Q Consensus       151 ~s~D-----~~i~iw~  161 (162)
                      |+.+     ..+..||
T Consensus       254 GG~~~~~~~~~~~~yd  269 (306)
T 3ii7_A          254 AGFQGVGRLGHILEYN  269 (306)
T ss_dssp             ECBCSSSBCCEEEEEE
T ss_pred             eCcCCCeeeeeEEEEc
Confidence            7754     3456665

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.45  E-value=0.93  Score=32.59  Aligned_cols=62  Identities=18%  Similarity=0.212  Sum_probs=37.5

Q ss_pred             CCcEEEEEeCCC----CcEEEEeeCC-----CcEEEEECCCC-----eee-eecc---CCCCCEEEEEEccCCCEEEEEe
Q psy12456          8 GPTLTTAQLHPD----GLIFGIGTSD-----SQVQIWDLKKQ-----KNV-TDFQ---LDAGPIQALSFSENGYYLATAA   69 (162)
Q Consensus         8 ~~~v~~~~~~~~----g~~~a~g~~d-----g~i~~wd~~~~-----~~~-~~~~---~~~~~v~~i~~~~~~~~l~s~~   69 (162)
                      ......++++|+    +.++++-...     +.|..|+...+     +.+ ..+.   .....-..++|.|||.++++.+
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            456788999998    5555544432     56778887643     112 2233   1111235789999998776643

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.39  E-value=1.4  Score=34.33  Aligned_cols=98  Identities=14%  Similarity=0.108  Sum_probs=58.1

Q ss_pred             EEEEEccCCCEEEEEe-CCCeEEEEEcccCcc-----------eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEE
Q psy12456         54 QALSFSENGYYLATAA-DENCVKLWDLRKLKN-----------FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFL  119 (162)
Q Consensus        54 ~~i~~~~~~~~l~s~~-~d~~v~~wd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~  119 (162)
                      ..+..+|||++++.++ .+.++.++|+++...           ...-+..........+|.++|....+-.-|  +..|+
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence            3678999999988877 477999999875321           111122223346678999999554554444  55565


Q ss_pred             eCCc----------eEEEEeecCcccEEEEEE------CCCCceEEEee
Q psy12456        120 CKQW----------QELAMFNEHTAMVTGVRF------GTHAHYLASSS  152 (162)
Q Consensus       120 ~~~~----------~~~~~~~~h~~~v~~~~~------s~~~~~l~s~s  152 (162)
                      ....          ..+..+.-|-. +-++.-      .|+|+||++..
T Consensus       406 i~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          406 MEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred             ccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence            4322          34445555544 223322      46777877753

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.18  E-value=0.92  Score=31.48  Aligned_cols=62  Identities=15%  Similarity=0.254  Sum_probs=38.1

Q ss_pred             CCcEEEEeeCC----CcEEEEECCCCeeee--eccCCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEcccC
Q psy12456         19 DGLIFGIGTSD----SQVQIWDLKKQKNVT--DFQLDAGPIQALSFSENGYYLATAADE------NCVKLWDLRKL   82 (162)
Q Consensus        19 ~g~~~a~g~~d----g~i~~wd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d------~~v~~wd~~~~   82 (162)
                      ++.+++.|+.+    ..+.+||+.+++-..  .+.........+.+  ++..++.|+.+      ..+.+||..+.
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~  128 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTE  128 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence            67788888865    668899998875432  22222222222333  56677777755      35788888653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.03  E-value=1.7  Score=34.02  Aligned_cols=152  Identities=9%  Similarity=0.012  Sum_probs=86.0

Q ss_pred             CcEEEEEeCCC-CcEEEEeeCCCcEEEEECCCCeeeeeccC------CCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcc
Q psy12456          9 PTLTTAQLHPD-GLIFGIGTSDSQVQIWDLKKQKNVTDFQL------DAGPIQALSFSENGY-YLATAADENCVKLWDLR   80 (162)
Q Consensus         9 ~~v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~~~~~~~~------~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~   80 (162)
                      ..+.++++.+. +.++.+=...+.|+.++++.......+..      .......+|+...+. ++.+-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            45778999985 45555555578888888765433222322      234678999998755 45566677889998885


Q ss_pred             cCcceeEEeeCCCCCeeEEEECC-CCCEEEEecc-cE-EEEEeCC-ceEEE-EeecCcccEEEEEECCCCc-eEEEeecC
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQ-SGTYMAVAGT-DV-RVFLCKQ-WQELA-MFNEHTAMVTGVRFGTHAH-YLASSSMD  154 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~-~~-~i~~~~~-~~~~~-~~~~h~~~v~~~~~s~~~~-~l~s~s~D  154 (162)
                      . +....+........+.+++.| .|.+..+-.. .. +|+.... +.... .....-...+++++.++++ +..+=+..
T Consensus       420 G-~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~  498 (628)
T 4a0p_A          420 G-RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDL  498 (628)
T ss_dssp             S-CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             C-CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC
Confidence            3 322233222334578999999 5555544322 22 5554321 21111 1233344567888887644 33443444


Q ss_pred             CeEEEee
Q psy12456        155 RTLKLYS  161 (162)
Q Consensus       155 ~~i~iw~  161 (162)
                      +.|...+
T Consensus       499 ~~I~~~~  505 (628)
T 4a0p_A          499 RRIESSD  505 (628)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEe
Confidence            5555544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.93  E-value=1  Score=31.12  Aligned_cols=136  Identities=14%  Similarity=0.207  Sum_probs=67.8

Q ss_pred             CCcEEEEeeCCC-----cEEEEECCCCeeee--eccCCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEcccCc--c
Q psy12456         19 DGLIFGIGTSDS-----QVQIWDLKKQKNVT--DFQLDAGPIQALSFSENGYYLATAADE-----NCVKLWDLRKLK--N   84 (162)
Q Consensus        19 ~g~~~a~g~~dg-----~i~~wd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d-----~~v~~wd~~~~~--~   84 (162)
                      ++++++.|+.++     .+.+||+.+++-..  .+......-..+.+  +++.++.|+.+     ..+..||+.+.+  .
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            678888887543     58889988775432  22222222222222  56677777654     357888886532  1


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecc-------cEEEEEeC--CceEEEEeecCcccEEEEEECCCCceEEEeecCC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGT-------DVRVFLCK--QWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~i~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                      +..+. ........+.  .++++++.|+.       ++.+++..  .|..+..+.........+.+  +++.++.|+.++
T Consensus       190 ~~~~p-~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  264 (301)
T 2vpj_A          190 VTPMA-TKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDG  264 (301)
T ss_dssp             ECCCS-SCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             CCCCC-cccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCC
Confidence            11111 1111112222  25667677654       24556543  34544433221111222223  567777777653


Q ss_pred             -----eEEEee
Q psy12456        156 -----TLKLYS  161 (162)
Q Consensus       156 -----~i~iw~  161 (162)
                           .+.+||
T Consensus       265 ~~~~~~v~~yd  275 (301)
T 2vpj_A          265 NSLLSSIECYD  275 (301)
T ss_dssp             SSBEEEEEEEE
T ss_pred             CcccccEEEEc
Confidence                 355555

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=93.72  E-value=1.3  Score=31.51  Aligned_cols=51  Identities=18%  Similarity=0.219  Sum_probs=30.0

Q ss_pred             CCcEEEEeeC-C---------CcEEEEECCCCeeeee--cc-CCCCCEEEEEEccCCCEEEEEeCC
Q psy12456         19 DGLIFGIGTS-D---------SQVQIWDLKKQKNVTD--FQ-LDAGPIQALSFSENGYYLATAADE   71 (162)
Q Consensus        19 ~g~~~a~g~~-d---------g~i~~wd~~~~~~~~~--~~-~~~~~v~~i~~~~~~~~l~s~~~d   71 (162)
                      ++++++.|+. +         ..+.+||+.+.+-...  +. .......++.  .+++.++.|+.+
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~  128 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence            5788888876 2         4688999988754322  21 1112222223  467777888754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.52  E-value=1.5  Score=31.78  Aligned_cols=139  Identities=9%  Similarity=0.160  Sum_probs=78.5

Q ss_pred             EEEEEeCC--CCc--EEEEeeC--CCcEEEEECCCC----eeeeeccCC-CCCEEEEEEccCCCEEEEEeC---------
Q psy12456         11 LTTAQLHP--DGL--IFGIGTS--DSQVQIWDLKKQ----KNVTDFQLD-AGPIQALSFSENGYYLATAAD---------   70 (162)
Q Consensus        11 v~~~~~~~--~g~--~~a~g~~--dg~i~~wd~~~~----~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~---------   70 (162)
                      .-.+.+.+  +|.  ++++-..  +.++.+|+++.+    ..+.++... -.....+++.++|.+.++..-         
T Consensus       114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~  193 (355)
T 3sre_A          114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS  193 (355)
T ss_dssp             EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHH
T ss_pred             eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccccc
Confidence            33444443  343  5555444  567888777653    223444432 245788999999988877651         


Q ss_pred             --------CCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCC---ceEEEEeecCcccE
Q psy12456         71 --------ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQ---WQELAMFNEHTAMV  136 (162)
Q Consensus        71 --------d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~---~~~~~~~~~h~~~v  136 (162)
                              .+.+.-+|..  + +.... ..-...+.++|+|+++.+..+.+.   +..|....   ....+.+ ......
T Consensus       194 ~e~~~~~~~g~vyr~d~~--~-~~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~P  268 (355)
T 3sre_A          194 WEMHLGLAWSFVTYYSPN--D-VRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLV  268 (355)
T ss_dssp             HHHHTTCCCEEEEEECTT--C-CEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEE
T ss_pred             chhhccCCccEEEEEECC--e-EEEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCC
Confidence                    1334334432  2 22211 111236889999999888777643   55555532   1222334 224567


Q ss_pred             EEEEECC-CCceEEEeecC
Q psy12456        137 TGVRFGT-HAHYLASSSMD  154 (162)
Q Consensus       137 ~~~~~s~-~~~~l~s~s~D  154 (162)
                      -.++..+ +|++.+++..+
T Consensus       269 DGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          269 DNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEECTTTCCEEEEEESC
T ss_pred             ceEEEeCCCCcEEEEecCC
Confidence            7888988 58888766544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.53  E-value=1.7  Score=29.60  Aligned_cols=101  Identities=12%  Similarity=0.009  Sum_probs=57.2

Q ss_pred             CCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc-----ceeEEeeCC-CCCeeEEEECCCCCEEEEecccEEEEEeCCce
Q psy12456         51 GPIQALSFSENGYYLATAADENCVKLWDLRKLK-----NFKTLQLDP-NYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQ  124 (162)
Q Consensus        51 ~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~-----~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~  124 (162)
                      ..+..++|+|++.+.+.  .++.+.-.+..+.+     ...+..... -.....+.|.|+|.+-++  .|.+|+-.....
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            46779999999987776  56654444332211     111111100 011477899999998888  445665443211


Q ss_pred             ---------EEEEeecCcccEEEEEECCCCceEEEeecCCeE
Q psy12456        125 ---------ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTL  157 (162)
Q Consensus       125 ---------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i  157 (162)
                               ....-++-=..+..+.|.|++.+.+..  |+.+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence                     011111111346889999999888766  6664

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.12  E-value=2.1  Score=29.77  Aligned_cols=136  Identities=15%  Similarity=0.261  Sum_probs=65.6

Q ss_pred             CCcEEEEeeC----C-----CcEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEcccC
Q psy12456         19 DGLIFGIGTS----D-----SQVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAADE-----NCVKLWDLRKL   82 (162)
Q Consensus        19 ~g~~~a~g~~----d-----g~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-----~~v~~wd~~~~   82 (162)
                      ++.+++.|+.    +     ..+.+||+.+++-...  +.........+.+  ++..++.|+.+     ..+..||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            6778888876    2     4588899887753322  2222222222333  56677776643     35778888653


Q ss_pred             c--ceeEEeeCCCCCeeEEEECCCCCEEEEeccc-------EEEEEeC--CceEEEEeecCcccEEEEEECCCCceEEEe
Q psy12456         83 K--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-------VRVFLCK--QWQELAMFNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        83 ~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~i~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      +  .+..+. .....-..+.+  ++++++.|+.+       +.+++..  .|..+..+......-..+.+  ++++++.|
T Consensus       148 ~W~~~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G  222 (308)
T 1zgk_A          148 EWHLVAPML-TRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAG  222 (308)
T ss_dssp             EEEECCCCS-SCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             eEeECCCCC-ccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEe
Confidence            2  111111 11111122222  56666666532       4455543  24433322211111122223  56677777


Q ss_pred             ecC-----CeEEEee
Q psy12456        152 SMD-----RTLKLYS  161 (162)
Q Consensus       152 s~D-----~~i~iw~  161 (162)
                      +.+     ..+.+||
T Consensus       223 G~~~~~~~~~v~~yd  237 (308)
T 1zgk_A          223 GYDGQDQLNSVERYD  237 (308)
T ss_dssp             CBCSSSBCCCEEEEE
T ss_pred             CCCCCCccceEEEEe
Confidence            664     3456655

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=91.74  E-value=2.3  Score=29.35  Aligned_cols=136  Identities=15%  Similarity=0.236  Sum_probs=67.4

Q ss_pred             CCcEEEEeeCC-----CcEEEEECCCCe---eee--eccCCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEcccCc
Q psy12456         19 DGLIFGIGTSD-----SQVQIWDLKKQK---NVT--DFQLDAGPIQALSFSENGYYLATAADE-----NCVKLWDLRKLK   83 (162)
Q Consensus        19 ~g~~~a~g~~d-----g~i~~wd~~~~~---~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d-----~~v~~wd~~~~~   83 (162)
                      ++.+++.|+.+     ..+.+||+.+++   -..  .+......-..+.+  ++..++.|+.+     ..+.+||..+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~  139 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ  139 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence            57788888865     358899988766   322  22222222222233  56677777643     357888876533


Q ss_pred             --ceeEEeeCCCCCeeEEEECCCCCEEEEecc-------cEEEEEeC--CceEEEEeecCcccEEEEEECCCCceEEEee
Q psy12456         84 --NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-------DVRVFLCK--QWQELAMFNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        84 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~i~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                        .+..+. ..... ..++. .++++++.|+.       ++.+++..  .|..+..+......-..+.+  +++.++.|+
T Consensus       140 W~~~~~~p-~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG  214 (301)
T 2vpj_A          140 WSMLGDMQ-TAREG-AGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGG  214 (301)
T ss_dssp             EEEEEECS-SCCBS-CEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             EEECCCCC-CCccc-ceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeC
Confidence              222211 11111 22222 25667677653       24555543  34444332211111122222  566777777


Q ss_pred             cC-----CeEEEee
Q psy12456        153 MD-----RTLKLYS  161 (162)
Q Consensus       153 ~D-----~~i~iw~  161 (162)
                      .+     ..+.+||
T Consensus       215 ~~~~~~~~~v~~yd  228 (301)
T 2vpj_A          215 FDGTAHLSSVEAYN  228 (301)
T ss_dssp             BCSSSBCCCEEEEE
T ss_pred             CCCCcccceEEEEe
Confidence            64     3456665

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.92  E-value=2.9  Score=29.09  Aligned_cols=129  Identities=15%  Similarity=0.201  Sum_probs=62.4

Q ss_pred             CCcEEEEeeCC--------CcEEEEECCCCeeee--eccCCCCCEEEEEEccCCCEEEEEeC-C-----CeEEEEEcccC
Q psy12456         19 DGLIFGIGTSD--------SQVQIWDLKKQKNVT--DFQLDAGPIQALSFSENGYYLATAAD-E-----NCVKLWDLRKL   82 (162)
Q Consensus        19 ~g~~~a~g~~d--------g~i~~wd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~-d-----~~v~~wd~~~~   82 (162)
                      ++++++.|+.+        ..+.+||+.+++-..  .+......-..+.  -+++.++.|+. +     ..+..||..+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            67788888843        458899998775332  2222221222222  35667777765 2     36888888653


Q ss_pred             c--ceeEEeeCCCCCeeEEEECCCCCEEEEeccc-------EEEEEeC--CceEEEEeecCcccEEEEEECCCCceEEEe
Q psy12456         83 K--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-------VRVFLCK--QWQELAMFNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        83 ~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~i~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      +  .+..+. .+... ..++. -++++++.|+.+       +.+++..  .|..+..+.........+.+  ++++++.|
T Consensus       176 ~W~~~~~~p-~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~G  250 (315)
T 4asc_A          176 EWKELAPMQ-TARSL-FGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIG  250 (315)
T ss_dssp             EEEECCCCS-SCCBS-CEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEE
T ss_pred             eEEECCCCC-Cchhc-eEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEEC
Confidence            2  222111 11111 12222 256666676542       3444433  35554432211111222223  56777777


Q ss_pred             ecC
Q psy12456        152 SMD  154 (162)
Q Consensus       152 s~D  154 (162)
                      +.+
T Consensus       251 G~~  253 (315)
T 4asc_A          251 GFA  253 (315)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.87  E-value=2.8  Score=28.88  Aligned_cols=61  Identities=20%  Similarity=0.399  Sum_probs=36.1

Q ss_pred             CCcEEEEeeCCC-----cEEEEECCCCeeee--eccCCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEEccc
Q psy12456         19 DGLIFGIGTSDS-----QVQIWDLKKQKNVT--DFQLDAGPIQALSFSENGYYLATAADEN-----CVKLWDLRK   81 (162)
Q Consensus        19 ~g~~~a~g~~dg-----~i~~wd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d~-----~v~~wd~~~   81 (162)
                      ++.+++.|+.++     .+.+||..+++-..  .+.........+.+  ++..++.|+.++     .+..||+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~  133 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKS  133 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCC
Confidence            677888888653     58889988775332  22222222222233  566777776543     467788764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=90.76  E-value=6.9  Score=33.11  Aligned_cols=103  Identities=11%  Similarity=0.112  Sum_probs=64.7

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeee--eeccCCCCCEEEEEEccC------CCEEEEEeC-CCeEEEEE
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV--TDFQLDAGPIQALSFSEN------GYYLATAAD-ENCVKLWD   78 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~i~~~~~------~~~l~s~~~-d~~v~~wd   78 (162)
                      +..|+.++.+.  .+++.++ ++.+.+++++.++..  ...+. ...|.++++.|.      +.+++.|.. |+++++++
T Consensus       513 ~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l-~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s  588 (1158)
T 3ei3_A          513 AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEM-EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK  588 (1158)
T ss_dssp             CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEEC-SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCC-CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence            44566666664  3455554 678888887755322  22222 357999999863      468999997 99999999


Q ss_pred             cccCcceeEEeeCCCCCeeEEEEC--CCCCEEEEeccc
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCFD--QSGTYMAVAGTD  114 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~  114 (162)
                      +...+.+...........+++++.  ....++..|-.|
T Consensus       589 L~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~d  626 (1158)
T 3ei3_A          589 LPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD  626 (1158)
T ss_dssp             TTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred             CCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCC
Confidence            987766655444322234444443  234567777666

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.24  E-value=3.3  Score=28.57  Aligned_cols=136  Identities=14%  Similarity=0.247  Sum_probs=66.9

Q ss_pred             CCcEEEEeeCCC-----cEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeCC-------CeEEEEEcccCc-
Q psy12456         19 DGLIFGIGTSDS-----QVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAADE-------NCVKLWDLRKLK-   83 (162)
Q Consensus        19 ~g~~~a~g~~dg-----~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-------~~v~~wd~~~~~-   83 (162)
                      ++++++.|+.++     .+.+||+.+++-...  +.........+.+  +++.++.|+.+       ..+..||+.+.+ 
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            678888888654     477899887754322  2222222222222  56666666542       347888886532 


Q ss_pred             -ceeEEeeCCCCCeeEEEECCCCCEEEEecc-------cEEEEEeC--CceEEEEeecCcccEEEEEECCCCceEEEeec
Q psy12456         84 -NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-------DVRVFLCK--QWQELAMFNEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        84 -~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~i~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                       .+..+. ..... .+++. -++++++.|+.       ++.+++..  .|..+..+......-..+.+  +++.++.|+.
T Consensus       186 ~~~~~~p-~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~  260 (302)
T 2xn4_A          186 TYIAEMS-TRRSG-AGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGD  260 (302)
T ss_dssp             EEECCCS-SCCBS-CEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             EECCCCc-ccccc-ccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCc
Confidence             221111 11111 12222 25667777654       24555543  35444432211111112222  5677777776


Q ss_pred             CC-----eEEEee
Q psy12456        154 DR-----TLKLYS  161 (162)
Q Consensus       154 D~-----~i~iw~  161 (162)
                      ++     .+.+||
T Consensus       261 ~~~~~~~~v~~yd  273 (302)
T 2xn4_A          261 DGSCNLASVEYYN  273 (302)
T ss_dssp             CSSSBCCCEEEEE
T ss_pred             CCCcccccEEEEc
Confidence            53     366665

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.96  E-value=0.9  Score=37.41  Aligned_cols=38  Identities=13%  Similarity=0.192  Sum_probs=32.4

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ   47 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~   47 (162)
                      .+.++...++..++.+-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            45667778888899999999999999999998887653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.52  E-value=3.9  Score=28.37  Aligned_cols=136  Identities=12%  Similarity=0.165  Sum_probs=67.0

Q ss_pred             CCcEEEEeeCC-----CcEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEcccCc--c
Q psy12456         19 DGLIFGIGTSD-----SQVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAADE-----NCVKLWDLRKLK--N   84 (162)
Q Consensus        19 ~g~~~a~g~~d-----g~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-----~~v~~wd~~~~~--~   84 (162)
                      ++++++.|+.+     ..+.+||+.+++-...  +......-..+.+  ++..++.|+.+     ..+..||+.+.+  .
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            67888888754     3588899887754322  2222222222333  56677777654     357888886532  1


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecc-------cEEEEEeCC--ceEEEEeecCcccEEEEEECCCCceEEEeecCC
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGT-------DVRVFLCKQ--WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~i~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                      +..+. .+...-..+.+  ++++++.|+.       ++.+++..+  |..+..+.........+.+  ++++++.|+.++
T Consensus       199 ~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  273 (308)
T 1zgk_A          199 ITAMN-TIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDG  273 (308)
T ss_dssp             CCCCS-SCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             CCCCC-CccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCC
Confidence            11111 11111122222  5667777653       255555432  4444332211111122222  567777777543


Q ss_pred             -----eEEEee
Q psy12456        156 -----TLKLYS  161 (162)
Q Consensus       156 -----~i~iw~  161 (162)
                           .+.+||
T Consensus       274 ~~~~~~v~~yd  284 (308)
T 1zgk_A          274 HTFLDSVECYD  284 (308)
T ss_dssp             SCBCCEEEEEE
T ss_pred             CcccceEEEEc
Confidence                 355555

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=88.24  E-value=2.9  Score=32.59  Aligned_cols=57  Identities=14%  Similarity=0.077  Sum_probs=40.6

Q ss_pred             EEEEeCCCCcEEEEeeCC------------CcEEEEECCCCeeeeeccCC-CCCEEEEEEccCCCEEEEE
Q psy12456         12 TTAQLHPDGLIFGIGTSD------------SQVQIWDLKKQKNVTDFQLD-AGPIQALSFSENGYYLATA   68 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~d------------g~i~~wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~   68 (162)
                      --+.|+|+|.+++.-..+            ..+.+.+..+++..+-+..+ ...+..++|+||++.|...
T Consensus       479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            558899999988765543            23556676667665555554 4679999999999887665

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.94  E-value=7.1  Score=29.38  Aligned_cols=102  Identities=19%  Similarity=0.190  Sum_probs=56.5

Q ss_pred             EEEEEeCCCCc-EEEEeeCCCcEEEEECCCC---eeeeecc---C------CCCCEEEEEEccC----CCEEEEEeCC--
Q psy12456         11 LTTAQLHPDGL-IFGIGTSDSQVQIWDLKKQ---KNVTDFQ---L------DAGPIQALSFSEN----GYYLATAADE--   71 (162)
Q Consensus        11 v~~~~~~~~g~-~~a~g~~dg~i~~wd~~~~---~~~~~~~---~------~~~~v~~i~~~~~----~~~l~s~~~d--   71 (162)
                      -..++|.|+|. .|.++...|.|++++.+..   +++..+.   .      ..+....|+|+|+    +.+.++-+.+  
T Consensus        16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~   95 (463)
T 2wg3_C           16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE   95 (463)
T ss_dssp             EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred             ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence            35789999996 3445677899999975432   1222222   1      1356789999996    4444443321  


Q ss_pred             ----------CeEEEEEcccC----------cceeEEe-eCCCCCeeEEEECCCCCEEEEec
Q psy12456         72 ----------NCVKLWDLRKL----------KNFKTLQ-LDPNYEIRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        72 ----------~~v~~wd~~~~----------~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~  112 (162)
                                ..|.-|.+...          +.+.... .........+.|.|+|.+.++.+
T Consensus        96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G  157 (463)
T 2wg3_C           96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG  157 (463)
T ss_dssp             SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred             CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence                      12333554311          1111111 11122367899999998666543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=87.21  E-value=3.7  Score=29.59  Aligned_cols=63  Identities=6%  Similarity=0.019  Sum_probs=40.7

Q ss_pred             CcEEEEeeCCCcEEEEECCCCeeeeeccCC-CCCEEEEEEc--c-CCCEEEEE-eCCCeEEEEEcccC
Q psy12456         20 GLIFGIGTSDSQVQIWDLKKQKNVTDFQLD-AGPIQALSFS--E-NGYYLATA-ADENCVKLWDLRKL   82 (162)
Q Consensus        20 g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~~--~-~~~~l~s~-~~d~~v~~wd~~~~   82 (162)
                      +.++.+++.||.|.-+|.++|+..-+++.. ..++....-.  + ++..++.. ..||.|..+|..+.
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G   77 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG   77 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC
Confidence            346788999999999999999998887654 1233221110  1 22333333 57898988887653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.56  E-value=11  Score=29.93  Aligned_cols=69  Identities=13%  Similarity=0.139  Sum_probs=41.1

Q ss_pred             EEEEeCCCCcEEEEeeCCC------cEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeCCC--eEEEEEccc
Q psy12456         12 TTAQLHPDGLIFGIGTSDS------QVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAADEN--CVKLWDLRK   81 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg------~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d~--~v~~wd~~~   81 (162)
                      +++.+..++++++.|+.++      .+.+||..+.+-...  +......-. ++.-.++..++.|+.++  .+.+||..+
T Consensus       444 s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~~v~~yd~~t  522 (695)
T 2zwa_A          444 TFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGPAMLLYNVTE  522 (695)
T ss_dssp             EEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCE-EEECTTSCEEEECCBCSSCSEEEEETTT
T ss_pred             EEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccce-EEEEcCCEEEEECCCCCCCCEEEEECCC
Confidence            3444433788888888643      478899887654322  221111122 23323778888887654  688899865

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.28  E-value=7  Score=27.61  Aligned_cols=49  Identities=10%  Similarity=-0.038  Sum_probs=25.1

Q ss_pred             CcEEEEECCCCeeee--eccCCCCCEEEEEEccCCCEEEEEeC------CCeEEEEEc
Q psy12456         30 SQVQIWDLKKQKNVT--DFQLDAGPIQALSFSENGYYLATAAD------ENCVKLWDL   79 (162)
Q Consensus        30 g~i~~wd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~------d~~v~~wd~   79 (162)
                      ..+.+||+.+.+-..  .+......-.+++.. ++..++.|+.      ...+..||+
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence            468899998875432  222111110122222 5566666653      234666776

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=86.01  E-value=9  Score=28.63  Aligned_cols=101  Identities=7%  Similarity=-0.030  Sum_probs=54.4

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeC-------CCCCeeEEEECCC----CCEEEEecc-------
Q psy12456         52 PIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLD-------PNYEIRDLCFDQS----GTYMAVAGT-------  113 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~-------~~~~v~~~~~~~~----~~~~~~~~~-------  113 (162)
                      .-.+|+|.|+|.++++-...+.|..++..+.+........       ....+..++|+|+    +.+.++-+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            4568999999997776554456877775432221111111       1234568999994    443333321       


Q ss_pred             -----cEEEEEeC--C-------ceEEE-Eee-cCcccEEEEEECCCCceEEEee
Q psy12456        114 -----DVRVFLCK--Q-------WQELA-MFN-EHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus       114 -----~~~i~~~~--~-------~~~~~-~~~-~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                           ..+|+.++  .       .+.+. .+. ........+.|.|++.++++.+
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                 22333221  1       11121 121 1122478899999999887754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=85.84  E-value=12  Score=29.70  Aligned_cols=134  Identities=12%  Similarity=0.198  Sum_probs=68.4

Q ss_pred             CCCcEEEEeeCC----CcEEEEECCCCeeeeec--------cCCCCCEEEEEEccCCCEEEEEeCCC------eEEEEEc
Q psy12456         18 PDGLIFGIGTSD----SQVQIWDLKKQKNVTDF--------QLDAGPIQALSFSENGYYLATAADEN------CVKLWDL   79 (162)
Q Consensus        18 ~~g~~~a~g~~d----g~i~~wd~~~~~~~~~~--------~~~~~~v~~i~~~~~~~~l~s~~~d~------~v~~wd~   79 (162)
                      .++.+++.|+.+    ..+.+||..+++....-        ......-..+.+..++..++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            567788888854    45888998877543221        11112223334432677777777542      4678888


Q ss_pred             ccC--cceeEEeeCCCCCeeEEEECCCCCEEEEecc----cEEEEEeCC--ceEEEE---eecCcccEEEEEECCC-Cce
Q psy12456         80 RKL--KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT----DVRVFLCKQ--WQELAM---FNEHTAMVTGVRFGTH-AHY  147 (162)
Q Consensus        80 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~i~~~~~--~~~~~~---~~~h~~~v~~~~~s~~-~~~  147 (162)
                      .+.  +.+..+.. +.. -.+++.-.++++++.|+.    ++.+|+..+  |..+..   .......-..+.+..+ ++.
T Consensus       476 ~t~~W~~~~~~p~-~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSH-TRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSB-CCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCC-Ccc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            652  22222111 111 233344347788888776    456666433  444432   1111111122444444 667


Q ss_pred             EEEeec
Q psy12456        148 LASSSM  153 (162)
Q Consensus       148 l~s~s~  153 (162)
                      ++.|+.
T Consensus       554 yv~GG~  559 (695)
T 2zwa_A          554 IILGGG  559 (695)
T ss_dssp             EEECCB
T ss_pred             EEECCc
Confidence            777776

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=85.74  E-value=2  Score=35.43  Aligned_cols=38  Identities=18%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEe
Q psy12456         52 PIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~   89 (162)
                      .+.+++..++..++++-+.|+++|+|++.+.+.+....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677777888899999999999999999887665543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=85.57  E-value=6.4  Score=30.70  Aligned_cols=59  Identities=14%  Similarity=0.104  Sum_probs=38.4

Q ss_pred             EEEEEEccCCCEEEEEeCC------------CeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEe
Q psy12456         53 IQALSFSENGYYLATAADE------------NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVA  111 (162)
Q Consensus        53 v~~i~~~~~~~~l~s~~~d------------~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  111 (162)
                      .-.|+|+|.|.+++.-..+            ..+.+.+..+.+..+.+......+++.++|+|+++.|.+.
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            4578999999977766543            2344455444443343444445679999999999877554

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=85.54  E-value=7.2  Score=30.40  Aligned_cols=61  Identities=11%  Similarity=0.044  Sum_probs=42.8

Q ss_pred             CcEEEEEeCCCCcEEEEeeC------------CCcEEEEECCCCeeeeeccCC-CCCEEEEEEccCCCEEEEEe
Q psy12456          9 PTLTTAQLHPDGLIFGIGTS------------DSQVQIWDLKKQKNVTDFQLD-AGPIQALSFSENGYYLATAA   69 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~------------dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~   69 (162)
                      .....+.|.++|.++.....            ...+..++..+++...-+... ...+..++|+||++.|..+-
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            45578999999998874332            125666777677765555443 35689999999998887764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=85.21  E-value=7.5  Score=26.97  Aligned_cols=134  Identities=12%  Similarity=0.129  Sum_probs=63.2

Q ss_pred             EeCCCCcEEEEeeC-----C------CcEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeCC--------Ce
Q psy12456         15 QLHPDGLIFGIGTS-----D------SQVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAADE--------NC   73 (162)
Q Consensus        15 ~~~~~g~~~a~g~~-----d------g~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d--------~~   73 (162)
                      ....++++++.|+.     .      ..+..||..+++-...  +.........+.+  ++..++.|+.+        ..
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~  118 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS  118 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence            34457888888884     1      1277889887754321  2111111122222  55666677632        35


Q ss_pred             EEEEEcccCc--ceeEEeeCCCCCeeEEEECCCCCEEEEecc--------cEEEEEeC--CceEEEEeecCcccEEEEEE
Q psy12456         74 VKLWDLRKLK--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT--------DVRVFLCK--QWQELAMFNEHTAMVTGVRF  141 (162)
Q Consensus        74 v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~i~~~~--~~~~~~~~~~h~~~v~~~~~  141 (162)
                      +..||..+.+  .+..+. .+.. -.+++. .++++++.|+.        ++.+++..  +|..+..+......-..+.+
T Consensus       119 ~~~~d~~~~~W~~~~~~p-~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  195 (315)
T 4asc_A          119 VMCYDRLSFKWGESDPLP-YVVY-GHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH  195 (315)
T ss_dssp             EEEEETTTTEEEECCCCS-SCCB-SCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             EEEECCCCCcEeECCCCC-Cccc-ceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE
Confidence            7888886532  221111 1111 122222 35566667664        24555543  24444332211111122222


Q ss_pred             CCCCceEEEeecCC
Q psy12456        142 GTHAHYLASSSMDR  155 (162)
Q Consensus       142 s~~~~~l~s~s~D~  155 (162)
                        +++.++.|+.++
T Consensus       196 --~~~iyv~GG~~~  207 (315)
T 4asc_A          196 --DGRIIVAAGVTD  207 (315)
T ss_dssp             --TTEEEEEEEECS
T ss_pred             --CCEEEEEeccCC
Confidence              567777777654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.03  E-value=0.7  Score=38.79  Aligned_cols=36  Identities=11%  Similarity=0.154  Sum_probs=29.8

Q ss_pred             EEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc
Q psy12456         12 TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ   47 (162)
Q Consensus        12 ~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~   47 (162)
                      .+++..++..++.+-+.|+++|+||+.+++++.+..
T Consensus       241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            344566788899999999999999999998887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=84.90  E-value=8.7  Score=27.49  Aligned_cols=52  Identities=13%  Similarity=0.121  Sum_probs=31.0

Q ss_pred             CEEEEEEccCCC-EEEEEeCCCeEEEEEcccCc--ceeEE---eeCCCCCeeEEEECCC
Q psy12456         52 PIQALSFSENGY-YLATAADENCVKLWDLRKLK--NFKTL---QLDPNYEIRDLCFDQS  104 (162)
Q Consensus        52 ~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~~~--~~~~~---~~~~~~~v~~~~~~~~  104 (162)
                      .-..|+|.|+++ +++ +...+.|.+++.....  .+...   ..........++++|+
T Consensus        19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pd   76 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLI-TLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPD   76 (353)
T ss_dssp             SEEEEEECSTTCCEEE-EETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTT
T ss_pred             CcEEEEEcCCCCEEEE-EeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCC
Confidence            346899999998 554 5567889888743211  01111   0111224678999995

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=84.43  E-value=9.3  Score=27.41  Aligned_cols=62  Identities=16%  Similarity=0.183  Sum_probs=36.7

Q ss_pred             CCcEEEEEeCCC----CcEEEEeeC---C----CcEEEEECCCC-------eee-eeccC-CCCCEEEEEEccCCCEEEE
Q psy12456          8 GPTLTTAQLHPD----GLIFGIGTS---D----SQVQIWDLKKQ-------KNV-TDFQL-DAGPIQALSFSENGYYLAT   67 (162)
Q Consensus         8 ~~~v~~~~~~~~----g~~~a~g~~---d----g~i~~wd~~~~-------~~~-~~~~~-~~~~v~~i~~~~~~~~l~s   67 (162)
                      ......++++|+    +.++++-..   +    +.|..|+...+       +.+ ..+.. ....-..|+|.|||.++++
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt  151 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT  151 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence            356788999997    555554432   3    56777776543       111 22321 1112356899999987776


Q ss_pred             Ee
Q psy12456         68 AA   69 (162)
Q Consensus        68 ~~   69 (162)
                      -+
T Consensus       152 ~G  153 (354)
T 3a9g_A          152 TG  153 (354)
T ss_dssp             CC
T ss_pred             EC
Confidence            44

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=84.34  E-value=8.3  Score=26.77  Aligned_cols=65  Identities=9%  Similarity=0.026  Sum_probs=35.9

Q ss_pred             EeCCCCcEEEEeeC----CC-------cEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeCC-------CeE
Q psy12456         15 QLHPDGLIFGIGTS----DS-------QVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAADE-------NCV   74 (162)
Q Consensus        15 ~~~~~g~~~a~g~~----dg-------~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d-------~~v   74 (162)
                      ....++.+++.|+.    ++       .+..||..+++-...  +.........+.+  ++..++.|+.+       ..+
T Consensus        52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred             EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence            34567888888883    12       177889877654322  2222222222233  56677777653       246


Q ss_pred             EEEEccc
Q psy12456         75 KLWDLRK   81 (162)
Q Consensus        75 ~~wd~~~   81 (162)
                      .+||..+
T Consensus       130 ~~yd~~~  136 (318)
T 2woz_A          130 LCYDPVA  136 (318)
T ss_dssp             EEEETTT
T ss_pred             EEEeCCC
Confidence            7788764

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=84.04  E-value=3  Score=33.31  Aligned_cols=69  Identities=14%  Similarity=0.238  Sum_probs=42.8

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCC--EEEEEEcc---C-------CCEEEEEe--CCCeEE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP--IQALSFSE---N-------GYYLATAA--DENCVK   75 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~--v~~i~~~~---~-------~~~l~s~~--~d~~v~   75 (162)
                      .|+++.+  +..++.+-+.|.++|+||+++++.+.+......+  ... ...|   .       +.++++-+  ..|..+
T Consensus       223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s-~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk  299 (729)
T 3f7f_A          223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPS-HFRKVEAVGEYLSLYNNTLVTLLPLENGLFQ  299 (729)
T ss_dssp             EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSS-CCCCCCSCCCCEEESSSEEEEEETTTTCEEE
T ss_pred             eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCcccccc-ccCcccCcchhHhheeeEEEEEecCCCCeEE
Confidence            4565544  3678899999999999999999877665431110  000 0111   1       24555443  457889


Q ss_pred             EEEccc
Q psy12456         76 LWDLRK   81 (162)
Q Consensus        76 ~wd~~~   81 (162)
                      +|++..
T Consensus       300 ~~~l~~  305 (729)
T 3f7f_A          300 MGTLLV  305 (729)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            998853

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=83.09  E-value=9.5  Score=26.48  Aligned_cols=62  Identities=19%  Similarity=0.221  Sum_probs=35.3

Q ss_pred             CCcEEEEeeCC-------CcEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeC------CCeEEEEEcccC
Q psy12456         19 DGLIFGIGTSD-------SQVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAAD------ENCVKLWDLRKL   82 (162)
Q Consensus        19 ~g~~~a~g~~d-------g~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~------d~~v~~wd~~~~   82 (162)
                      ++++++.|+.+       ..+.+||+.+.+-...  +......-..+.  .++..++.|+.      -..+..||+.+.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            67788888864       2477889887754332  221111111222  35666777764      235888998653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=82.09  E-value=15  Score=32.15  Aligned_cols=126  Identities=17%  Similarity=0.243  Sum_probs=73.7

Q ss_pred             CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEE
Q psy12456         30 SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMA  109 (162)
Q Consensus        30 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  109 (162)
                      .+|.|-|+..+..+...+....   +.-.+|..+.++.-. ..++.++|+.+.+.+..+....  +|.==.|-.....-+
T Consensus        48 ~~vvIidl~~~~~~~rrpi~Ad---sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e--~VvfWkWis~~~l~l  121 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISLNTVAL  121 (1630)
T ss_pred             ceEEEEECCCCCCcccccccch---hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC--CceEEEecCCCeeEE
Confidence            4788888877554322221111   223677777666655 5789999998766666655533  233234444444444


Q ss_pred             EecccEEEEEeC-CceEEEEeecC----cccEEEEEECCCCceEEEee-------cCCeEEEee
Q psy12456        110 VAGTDVRVFLCK-QWQELAMFNEH----TAMVTGVRFGTHAHYLASSS-------MDRTLKLYS  161 (162)
Q Consensus       110 ~~~~~~~i~~~~-~~~~~~~~~~h----~~~v~~~~~s~~~~~l~s~s-------~D~~i~iw~  161 (162)
                      +..+.+--|... ...+++.|..|    ...|..-.-+++.+|++-.|       -.|.+.+|+
T Consensus       122 VT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS  185 (1630)
T 1xi4_A          122 VTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS  185 (1630)
T ss_pred             EcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeee
Confidence            444445556653 23456666666    34577777788899887433       346666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	162
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.003
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-11
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-09
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.002
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.2 bits (204), Expect = 3e-20
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 3/139 (2%)

Query: 26  GTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF 85
           G  D+  ++WD+++      F      I A+ F  NG   AT +D+   +L+DLR  +  
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261

Query: 86  KTLQLDPNYE-IRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFG 142
            T   D     I  + F +SG  +     D    V+   +     +   H   V+ +   
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

Query: 143 THAHYLASSSMDRTLKLYS 161
                +A+ S D  LK+++
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.4 bits (150), Expect = 8e-13
 Identities = 13/69 (18%), Positives = 28/69 (40%)

Query: 10  TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA 69
            +T+      G +   G  D    +WD  K             +  L  +++G  +AT +
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331

Query: 70  DENCVKLWD 78
            ++ +K+W+
Sbjct: 332 WDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.6 bits (140), Expect = 2e-11
 Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 61  NGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLC 120
           +     + A +   KLWD+R+    +T       +I  +CF  +G   A    D    L 
Sbjct: 195 DTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLF 253

Query: 121 KQWQELAMFNEHTAM----VTGVRFGTHAHYLASSSMDRTLKLYSL 162
               +  +           +T V F      L +   D    ++  
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 51  GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYM 108
             I A+ +  +   L +A+ +  + +WD         +    +  +    +  SG Y+
Sbjct: 56  AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYV 112

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.9 bits (185), Expect = 1e-17
 Identities = 32/166 (19%), Positives = 72/166 (43%), Gaps = 23/166 (13%)

Query: 17  HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSF------------------ 58
           + DG +    ++D  V++W +  ++   + +     ++ +S+                  
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211

Query: 59  --SENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-- 114
              + G +L + + +  +K+WD+       TL    N+ +R + F   G ++     D  
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVLFHSGGKFILSCADDKT 270

Query: 115 VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
           +RV+  K  + +   N H   VT + F   A Y+ + S+D+T+K++
Sbjct: 271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (166), Expect = 5e-15
 Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 3/109 (2%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE 71
            T +    G     G+ D  +++WD+     +         ++ + F   G ++ + AD+
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 268

Query: 72  NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVF 118
             +++WD +  +  KTL     + +  L F ++  Y+     D  V+V+
Sbjct: 269 KTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.7 bits (148), Expect = 2e-12
 Identities = 23/167 (13%), Positives = 63/167 (37%), Gaps = 21/167 (12%)

Query: 17  HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKL 76
            P+G      + D  +++W+++    V  F      ++ +  +++G  +A+ +++  V++
Sbjct: 110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169

Query: 77  WDLRKLKNFKTLQ-------------------LDPNYEIRDLCFDQSGTYMAVAGTD--V 115
           W +   +    L+                   +            + G ++     D  +
Sbjct: 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 229

Query: 116 RVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           +++       L     H   V GV F +   ++ S + D+TL+++  
Sbjct: 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 276

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 3e-11
 Identities = 13/67 (19%), Positives = 27/67 (40%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE 71
                H  G        D  +++WD K ++ +         + +L F +   Y+ T + +
Sbjct: 251 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 310

Query: 72  NCVKLWD 78
             VK+W+
Sbjct: 311 QTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (119), Expect = 1e-08
 Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 3/153 (1%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE 71
           T    HP   +    + D+ +++WD +        +     +Q +SF  +G  LA+ + +
Sbjct: 21  TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80

Query: 72  NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF 129
             +KLWD +  +  +T+    ++ +  +    +G ++  A  D  ++++  +    +  F
Sbjct: 81  MTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139

Query: 130 NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
             H   V  VR       +AS S D+T++++ +
Sbjct: 140 TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (107), Expect = 4e-07
 Identities = 20/114 (17%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 51  GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFD--QSGTYM 108
            P+  + F      + +A+++  +K+WD       +TL+      ++D+ FD        
Sbjct: 18  SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLAS 76

Query: 109 AVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
             A   ++++  + ++ +   + H   V+ V    +  ++ S+S D+T+K++ +
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 7e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 121 KQW----QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           K+W     E    + H + VT V F      + S+S D T+K++  
Sbjct: 1   KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (170), Expect = 2e-15
 Identities = 30/172 (17%), Positives = 58/172 (33%), Gaps = 26/172 (15%)

Query: 17  HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-------GPIQALSFSENGYYLATAA 69
             DG     G+ D  V++WD +    V     +          + ++ F+ +G  + + +
Sbjct: 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273

Query: 70  DENCVKLWDLRKLKNFKTLQLDPNYE-----------IRDLCFDQSGTYMAVAGTD--VR 116
            +  VKLW+L+   N    +   +             +  +   Q+  Y+     D  V 
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333

Query: 117 VFLCKQWQELAMFNEHTAMVTGV------RFGTHAHYLASSSMDRTLKLYSL 162
            +  K    L M   H   V  V        G   +  A+ S D   +++  
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (137), Expect = 5e-11
 Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 6/77 (7%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQAL------SFSENGYYL 65
            +     +      G+ D  V  WD K    +   Q     + ++      S        
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371

Query: 66  ATAADENCVKLWDLRKL 82
           AT + +   ++W  +K+
Sbjct: 372 ATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.0 bits (128), Expect = 7e-10
 Identities = 19/127 (14%), Positives = 42/127 (33%), Gaps = 17/127 (13%)

Query: 10  TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL------------DAGPIQALS 57
           ++ +     DG     G+ D  V++W+L+   N +D +                 + +++
Sbjct: 256 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 315

Query: 58  FSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPN-----YEIRDLCFDQSGTYMAVAG 112
            ++N  Y+ + + +  V  WD +       LQ   N                    A   
Sbjct: 316 TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS 375

Query: 113 TDVRVFL 119
            D +  +
Sbjct: 376 GDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 1e-05
 Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 24/132 (18%)

Query: 26  GTSDSQVQIWDLKKQKNVTDFQLDA-----GPIQALSFSENGYYLATAADENCVKLWDLR 80
             ++    +++    + + D +L         +  + FS +G YLAT  +    +++ + 
Sbjct: 34  KQTNDYYILYNPALPREI-DVELHKSLDHTSVVCCVKFSNDGEYLATGCN-KTTQVYRVS 91

Query: 81  KLKNFKTLQLDP-----------------NYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW 123
                  L  D                  +  IR +CF   G ++A    D  + +    
Sbjct: 92  DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE 151

Query: 124 QELAMFNEHTAM 135
               +       
Sbjct: 152 NRKIVMILQGHE 163

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 6e-13
 Identities = 27/160 (16%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 8   GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT 67
           G T     L  DG+    G+ D+ +++WD++    +            +   +N   L +
Sbjct: 175 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVS 232

Query: 68  AADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQE 125
              ++ VK+WD++  +  +TLQ    ++    C   +  ++  +  D  V+++  K  + 
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292

Query: 126 LAMFNE-----HTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
           +             +V  +R        A  S + T +  
Sbjct: 293 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 5e-06
 Identities = 13/147 (8%), Positives = 39/147 (26%), Gaps = 5/147 (3%)

Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
           L   G     G+ D+ +++W     K +       G + +    +N          +  +
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII-----SGSTDR 77

Query: 76  LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAM 135
              +   +  + +     +     C       +     D  + +        +      +
Sbjct: 78  TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137

Query: 136 VTGVRFGTHAHYLASSSMDRTLKLYSL 162
                       + S + D  +K++  
Sbjct: 138 AAVRCVQYDGRRVVSGAYDFMVKVWDP 164

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-06
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 17  HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKL 76
           H        G+ D+ +++WD++  + +         ++ + +      + + A +  VK+
Sbjct: 104 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR--RVVSGAYDFMVKV 161

Query: 77  WDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTA 134
           WD        TLQ    +  R       G ++     D  +RV+  +    +     H +
Sbjct: 162 WDPETETCLHTLQ---GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218

Query: 135 MVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           + +G+      + L S + D T+K++ +
Sbjct: 219 LTSGMEL--KDNILVSGNADSTVKIWDI 244

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 4e-05
 Identities = 15/119 (12%), Positives = 36/119 (30%), Gaps = 2/119 (1%)

Query: 35  WDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNY 94
           W   + K+    +     +        G  + + +D+N +K+W     K  +TL      
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTG 58

Query: 95  EIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSM 153
            +       +          ++V+  +  + +     HT+ V  +          S   
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 4e-11
 Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 18/145 (12%)

Query: 27  TSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK 86
           + D  +++W+    + V         I  L +      + + + +N ++LWD+       
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE---CGA 209

Query: 87  TLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL-----------CKQWQELAMFNEHTAM 135
            L++   +E    C       +     D ++ +                 L    EH+  
Sbjct: 210 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 269

Query: 136 VTGVRFGTHAHYLASSSMDRTLKLY 160
           V  ++F      + SSS D T+ ++
Sbjct: 270 VFRLQF--DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 1e-04
 Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 26  GTSDSQVQIWDLKKQKNVTDFQLDA---------GPIQALSFSENGYYLATAADENCVKL 76
           G  D ++++WDL    +                 G +  L F  + + + +++ ++ + +
Sbjct: 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 291

Query: 77  WD 78
           WD
Sbjct: 292 WD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
           L  D      G  D+ ++IWD    +         G +  L + E      ++     V 
Sbjct: 21  LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80

Query: 76  LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAM 135
             +  ++ N      +    +R             +     +          +   H A 
Sbjct: 81  DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140

Query: 136 VTGVRFGTHAHYLASSSMDRTLKLYSL 162
           V  V F     Y+ S+S DRT+K+++ 
Sbjct: 141 VNVVDF--DDKYIVSASGDRTIKVWNT 165

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.003
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 57 SFSENGYYLATAADENCVKLWDLRKLKNFKTLQ 89
              +   + +   +N +K+WD   L+  + L 
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT 52

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.8 bits (135), Expect = 8e-11
 Identities = 23/160 (14%), Positives = 52/160 (32%), Gaps = 9/160 (5%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA--GPIQALSFSENGYYLATAA 69
           +    + D     I  ++ +V I++    K V   +L    G +  + ++ +   + T  
Sbjct: 11  SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG 70

Query: 70  DENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLC-------KQ 122
            +    +W L+      TL +                     G+  RV            
Sbjct: 71  TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 130

Query: 123 WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           W    +     + V  + +  ++  LA+ S D   +++S 
Sbjct: 131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.2 bits (123), Expect = 3e-09
 Identities = 14/81 (17%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 85  FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFL----CKQWQELAMFNEHTAMVTGVR 140
           + +  ++P   I    +++  T +A+   +  V +      +W ++    EH   VTGV 
Sbjct: 2   YHSFLVEP---ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVD 58

Query: 141 FGTHAHYLASSSMDRTLKLYS 161
           +   ++ + +   DR   +++
Sbjct: 59  WAPDSNRIVTCGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.2 bits (123), Expect = 4e-09
 Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 52  PIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDP-NYEIRDLCFDQSGTYMAV 110
           PI   +++++   +A   + + V +++    K  +  +L   N ++  + +      +  
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 111 AGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH 146
            GTD   ++                +          
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.0 bits (94), Expect = 2e-05
 Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 7/141 (4%)

Query: 27  TSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADEN-CVKLWDLRKLKNF 85
           + DS V + D  K+  V     +  P+ A++F      +A   D    +  +D    K  
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS 279

Query: 86  KTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRF---- 141
              +LD   +           +  +               L   + H   V+ +      
Sbjct: 280 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL--DSLHKNSVSQISVLSGG 337

Query: 142 GTHAHYLASSSMDRTLKLYSL 162
                   ++ MD  + ++ +
Sbjct: 338 KAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 11/98 (11%)

Query: 4   SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLK------KQKNVTDFQLDAGPIQALS 57
           S AG  +       P        T+  + Q  D K               L    +  +S
Sbjct: 273 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQIS 332

Query: 58  FSENG----YYLATAADENCVKLWDLRKLKN-FKTLQL 90
               G        T   +  + +WD+R L++  K L++
Sbjct: 333 VLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLKI 370

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 6e-10
 Identities = 7/65 (10%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 15  QLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCV 74
           +    G  F     D+ +  W      ++   + ++  + +   S +  Y+ T + +   
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKA 330

Query: 75  KLWDL 79
            ++++
Sbjct: 331 TVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-07
 Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 5/137 (3%)

Query: 28  SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT 87
                      ++            I +L +   G +LA   + + V++  + K   ++ 
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261

Query: 88  LQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHA 145
              +       L F   G +    G D  +  +       +    + ++ V         
Sbjct: 262 HLHESCV--LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD 318

Query: 146 HYLASSSMDRTLKLYSL 162
            Y+ + S D+   +Y +
Sbjct: 319 KYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-07
 Identities = 14/101 (13%), Positives = 26/101 (25%), Gaps = 5/101 (4%)

Query: 51  GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYE----IRDLCFDQSGT 106
             + A++ S    ++ T     CVK+WD+    N   +           IR       G 
Sbjct: 52  EVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC 110

Query: 107 YMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHY 147
            + V G    + +                     +      
Sbjct: 111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.004
 Identities = 10/111 (9%), Positives = 26/111 (23%), Gaps = 9/111 (8%)

Query: 52  PIQALSFSENGYYLATAADENCVKLWDL-RKLKNFKTLQLDPNYEIRDLCFDQSGTYMAV 110
           P  +   + +G         + +    + R  +   TL  +    +  +       ++  
Sbjct: 11  PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL--NHGEVVCAVTISNPTRHVYT 68

Query: 111 AGTD-VRVF-----LCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR 155
            G   V+V+       K              +   +       L       
Sbjct: 69  GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.0 bits (123), Expect = 3e-09
 Identities = 7/114 (6%), Positives = 22/114 (19%), Gaps = 9/114 (7%)

Query: 56  LSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD- 114
            +      Y+      N + + D+     +K+  +   +               V     
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 115 --VRVFLCKQWQELAMFN------EHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
             +        +     N      E    +           + ++         
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.7 bits (117), Expect = 2e-08
 Identities = 13/169 (7%), Positives = 30/169 (17%), Gaps = 23/169 (13%)

Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGP-IQALSFSENGYYL-ATAADENC 73
           L        +    + + + D+          +           + +             
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 74  VKLWDLRKLKNFKTLQLDPNYE-----IRDLCFDQSGTYMAVAGTD-------------- 114
           +   DL   KN     L          +        G  +                    
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 115 VRVFLCKQWQELAMFNEHTAM--VTGVRFGTHAHYLASSSMDRTLKLYS 161
           + VF      E            V  +R         +      + + +
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT 172

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.1 bits (105), Expect = 8e-07
 Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 28  SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT 87
             +++  +DLK++K +    LD      ++F + G  L      N + +++   L+  K 
Sbjct: 270 VLNRLAKYDLKQRKLIKAANLDHTY-YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 328

Query: 88  LQL 90
           ++L
Sbjct: 329 IKL 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 6/105 (5%)

Query: 17  HPDGLIFGIGTSDSQVQIWDLKKQK-NVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
             D                DLK  K +  +F            S            N + 
Sbjct: 217 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLA 275

Query: 76  LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVF 118
            +DL++ K  K   LD       + FD+ G  + + GT   + VF
Sbjct: 276 KYDLKQRKLIKAANLDHT--YYCVAFDKKGDKLYLGGTFNDLAVF 318

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.2 bits (123), Expect = 3e-09
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 17  HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKL 76
                 +        +  +D+K +K           +  L  S +   +    D+  +  
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTRKVTEV----KNNLTDLRLSADRKTVMVRKDDGKIYT 340

Query: 77  WDLRKLKNFKTLQLD 91
           + L K ++ +T++ D
Sbjct: 341 FPLEKPEDERTVETD 355

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 19/158 (12%), Positives = 38/158 (24%), Gaps = 10/158 (6%)

Query: 9   PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATA 68
           P      L    L         Q+ + D   +K V               S +G YL   
Sbjct: 21  PKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVI 79

Query: 69  ADENCVKLWDLRKLKNFKTLQLDPNYEIRDL----CFDQSGTYMAVAGT---DVRVFLCK 121
             +  + + DL   +  K  ++    E R +           Y            +   +
Sbjct: 80  GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE 139

Query: 122 QWQELAMFNEHTAMVTGVRF--GTHAHYLASSSMDRTL 157
             +   + +     V    +        + +S      
Sbjct: 140 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 177

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 19/162 (11%), Positives = 40/162 (24%), Gaps = 9/162 (5%)

Query: 9   PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATA 68
           PT        + L         Q+ + D    +  T              S +G YL   
Sbjct: 21  PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVI 79

Query: 69  ADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC----FDQSGTYMAVAGTD---VRVFLCK 121
             +  V + DL   +     ++    E R +           Y            +   +
Sbjct: 80  GRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE 139

Query: 122 QWQELAMFNEHTAMVTGVRFGTHAHYLA-SSSMDRTLKLYSL 162
             +   + +          +       A  +S  R   + ++
Sbjct: 140 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.7 bits (111), Expect = 1e-07
 Identities = 16/97 (16%), Positives = 28/97 (28%)

Query: 51  GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAV 110
             I ALS S +G  L +A  E  +  WD+    + +         I  +     G    V
Sbjct: 13  KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV 72

Query: 111 AGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHY 147
           +  D    +      +         ++    G     
Sbjct: 73  SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA 109

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.2 bits (102), Expect = 2e-06
 Identities = 12/65 (18%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 17  HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALS--FSENGYYLATAADENCV 74
            PD +    G+ D+ V +W++ K  +       A  + +++     N   + +A  ++ +
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNI 292

Query: 75  KLWDL 79
           K W++
Sbjct: 293 KFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.0 bits (78), Expect = 0.002
 Identities = 13/137 (9%), Positives = 36/137 (26%), Gaps = 1/137 (0%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF-QLDAGPIQALSFSENGYYLATAAD 70
           T      DG       ++  +  WD+    +   F  + A  I  +  +  G     + D
Sbjct: 16  TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD 75

Query: 71  ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFN 130
           ++   +       +      +            +   +AVA     + +    +   +  
Sbjct: 76  DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 135

Query: 131 EHTAMVTGVRFGTHAHY 147
            + +    +        
Sbjct: 136 SYNSSCVALSNDKQFVA 152

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 34.2 bits (76), Expect = 0.004
 Identities = 4/31 (12%), Positives = 11/31 (35%)

Query: 132 HTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           H   +T +        L S+  +  +  + +
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDI 41

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 3e-07
 Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 5/96 (5%)

Query: 45  DFQLDAGP---IQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL--QLDPNYEIRDL 99
             Q++  P   I  +    +   L   + +  + ++          L   L   + +   
Sbjct: 3   IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 100 CFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAM 135
            F  +       GT     L         F   T  
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN 98

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 5e-07
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE 71
            + +  P         SD  +  W+L+ +K + +F         +  + +   L  A  +
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-KFNEDSVVKIACSDNILCLATSD 313

Query: 72  NCVKLWDLRKLKNFKTLQLDPNY 94
           +  K          +T++L+ + 
Sbjct: 314 DTFKTNAAID----QTIELNASS 332

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-06
 Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 17/116 (14%)

Query: 14  AQLHPDGLIFGIGTSDSQVQIWDL---------------KKQKNVTDFQLDAGPIQALSF 58
           A L  +   +   + D +V +                  +  +        A P+ ++ F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 59  SENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD 114
           S    +L TA  +  +  W+L+  K  K        E   +    S   + +A +D
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIACSDNILCLATSD 313

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 6/39 (15%), Positives = 15/39 (38%)

Query: 124 QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
           Q + +       ++ ++       L  +S D +L +Y  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF 40

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG---PIQALSFSENGYYLA 66
           ++  ++ P   +  I + D  + ++    Q    D         P+   +F +N     
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 67 TAADENC 73
                 
Sbjct: 73 YVGTVQG 79

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (107), Expect = 4e-07
 Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 1/64 (1%)

Query: 17  HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAG-PIQALSFSENGYYLATAADENCVK 75
            PDG      ++D  ++IW++   K      +      Q L        L + +    + 
Sbjct: 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306

Query: 76  LWDL 79
             + 
Sbjct: 307 FVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 5e-07
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 61  NGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVF 118
           +G  +A+A+ +  +K+W++  LK  KT+ +    E + L    +   +     +  +   
Sbjct: 249 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 2e-06
 Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 17 HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKL 76
           P G       + + V    +    +   +   +        S +GYY A+      V++
Sbjct: 26 TPAGDKI-QYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRI 84

Query: 77 W 77
          W
Sbjct: 85 W 85

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 2e-05
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 85  FKTLQLDPNYEIRDLCFDQSGTYMAVA-GTDVRVFLCKQWQELAMFNEHTAMVTGVRFGT 143
           F +L          L    +G  +    GT V         +  ++ EH+   T  +   
Sbjct: 9   FPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP 68

Query: 144 HAHYLASSSMDRTLKLY 160
             +Y AS  +   ++++
Sbjct: 69  SGYYCASGDVHGNVRIW 85

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 9e-07
 Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 12  TTAQLHPDGLIFGIGTSDSQVQIWDLKK-QKNVTDFQLDAGPIQALSFSENGYYLATAAD 70
              +   +  +   G+ D+ + I+ +K+  K +         +  L +      L ++  
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGA 277

Query: 71  ENCVKLWD 78
           + C+K W+
Sbjct: 278 DACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (79), Expect = 0.002
 Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 99  LCFDQSGTYMAVAGTD--VRVF-LCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDR 155
              +     +A    D  + ++ + +  + +   N H   V  + +      L SS  D 
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGADA 279

Query: 156 TLKLYS 161
            +K ++
Sbjct: 280 CIKRWN 285

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-06
 Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 53  IQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG 112
           I  L F +N  Y+ T AD+  ++++D    K    L    +  +  L +   G  ++ + 
Sbjct: 16  ITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGGILVSGST 72

Query: 113 TDVRVFLC---KQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL 162
                           +   +  T     +    +  Y+ + S D TL ++ L
Sbjct: 73  DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-06
 Identities = 14/106 (13%), Positives = 35/106 (33%)

Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVK 75
           L  +      G  D  ++++D   +K +       G + AL ++  G  ++ + D     
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78

Query: 76  LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK 121
               +          +      D+   ++  Y+     D  + + K
Sbjct: 79  WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.0 bits (99), Expect = 5e-06
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 16  LHPDGLIFGIGTSDSQVQIWDLKKQKNV-TDFQLDAGPIQALSFSENGYYLATAADENCV 74
            +    I  +  S++Q  I++L+  K V  +   DA  I +++F       A   D    
Sbjct: 290 FYVSDNIL-VSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKD-GQS 347

Query: 75  KLWDL 79
            L  L
Sbjct: 348 FLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 7e-05
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 51  GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAV 110
                 +F  +   L + ++ N   +++LR  K      L    +I  + F    T +A 
Sbjct: 283 NLSAITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAA 340

Query: 111 AGTDVRVFL 119
              D + FL
Sbjct: 341 VEKDGQSFL 349

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 2e-06
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 16/129 (12%)

Query: 35  WDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQL---D 91
                 +        +  + +LSF+++G  L +A  +  ++ WD++  +   TL +   D
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD 333

Query: 92  PNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASS 151
              E   L  D+ G  +A  G     FL K W+                       L   
Sbjct: 334 IEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR-------------SGMGADLNESLCCV 380

Query: 152 SMDRTLKLY 160
            +DR+++ +
Sbjct: 381 CLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 4e-06
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 12/102 (11%)

Query: 17  HPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQ----ALSFSENGYYLATAADEN 72
           +  G        D +++ WD+K ++ +T   +    I+     L+  E+G  LA      
Sbjct: 298 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG--- 354

Query: 73  CVKLWDLRKLKNFKTLQL--DPNYEIRDLCFDQSGTYMAVAG 112
              ++D++ LK      +  D N  +  +C D+S  +   AG
Sbjct: 355 ---VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 2e-04
 Identities = 13/141 (9%), Positives = 37/141 (26%), Gaps = 31/141 (21%)

Query: 51  GPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDL----------- 99
             I ++S   +  +  + + +  +K+WD + L N        ++ +              
Sbjct: 15  ADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72

Query: 100 -CFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHA----------- 145
                    +A       +  +   +  E          +       H+           
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 146 ----HYLASSSMDRTLKLYSL 162
               H L ++ +  T  ++  
Sbjct: 133 RLLSHRLVATDVKGTTYIWKF 153

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.3 bits (100), Expect = 4e-06
 Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 25  IGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN 84
              + + ++ +DL+K  ++    L      +++ S +G  +        +  +D   L+ 
Sbjct: 255 AFGAYNVLESFDLEKNASIKRVPLPHSY-YSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313

Query: 85  FKTLQL 90
              + L
Sbjct: 314 KGQVDL 319

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 1e-05
 Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 9/106 (8%)

Query: 64  YLATAADENCVKLWDLRKLKNFKTLQL-DPNYEIRDLCFDQSGTYMAVAGT--------D 114
           Y+   A  + + + D  K+   K + + D             G                D
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 115 VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY 160
           +         +L+   E    + G         LA       L+L 
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT 108

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 18/150 (12%), Positives = 35/150 (23%), Gaps = 20/150 (13%)

Query: 26  GTSDSQVQIWDLKKQKNVTDFQLDAGP--IQALSFSENGYYL-ATAADENCVKLWDLRKL 82
                ++ + D +K        +            +  G    AT      +   DL   
Sbjct: 7   PARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG 66

Query: 83  KNFKTLQLDPNYE----IRDLCFDQSGTYMAVAGTDVRVFLCKQWQ-------------E 125
           +    + L    E    +        G  +A+  + VR+ L                   
Sbjct: 67  ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS 126

Query: 126 LAMFNEHTAMVTGVRFGTHAHYLASSSMDR 155
                E    +T + +      L     D 
Sbjct: 127 RRKAFEAPRQITMLAWARDGSKLYGLGRDL 156

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 4e-05
 Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 2/124 (1%)

Query: 26  GTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYL-ATAADENCVKLWDLRKLKN 84
            +    + + D+   K      + + P      S +G  +    A  N V + D      
Sbjct: 8   NSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 85  FKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTH 144
             T+    + +   +  D    Y+    +     +      +A   +      G+     
Sbjct: 67  IATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD 126

Query: 145 AHYL 148
              L
Sbjct: 127 GKKL 130

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 8/73 (10%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 18  PDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENG--YYLATAADENCVK 75
                +   T+   V + D K  + +  F++      +++ S++      A +  +  + 
Sbjct: 268 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI-DSINVSQDEKPLLYALSTGDKTLY 326

Query: 76  LWDLRKLKNFKTL 88
           + D    +  +++
Sbjct: 327 IHDAESGEELRSV 339

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.7 bits (80), Expect = 0.001
 Identities = 8/62 (12%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 61  NGYYLATAADENCVKLWDLRKLKNFKTLQLDPN-YEIRDLCFDQSGTYMAVAGTD---VR 116
           +    AT   +  +++WD+   K  +   LD      + +    +G    ++ +    + 
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321

Query: 117 VF 118
            +
Sbjct: 322 FY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.9 bits (78), Expect = 0.003
 Identities = 11/106 (10%), Positives = 30/106 (28%), Gaps = 15/106 (14%)

Query: 51  GPIQALSFSENGYYLATAADEN-CVKLWDLRKLKNFKTLQLD--PNYEIRDLCF--DQSG 105
                LS+      +A    ++  V+  D    K    +Q     +  +  + F   +  
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 106 TYMAVAGTDVRVFLCK----------QWQELAMFNEHTAMVTGVRF 141
            Y+       +V +            +    + F      ++ + +
Sbjct: 78  QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	162
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.98
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.98
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.95
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.91
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.85
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.83
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.8
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.78
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.76
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.75
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.74
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.74
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.71
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.71
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.65
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.57
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.48
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.45
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.4
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.38
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.23
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.13
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.1
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.09
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.04
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.93
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.9
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.86
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.8
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.72
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.68
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.63
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.44
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.4
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.38
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.28
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.25
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.25
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.9
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.82
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.64
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.52
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.19
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.1
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.95
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.92
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.75
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.15
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.96
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.82
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.75
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.65
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.3
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.95
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	94.47
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.25
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.21
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.03
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.26
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.55
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	88.14
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	87.51
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.39
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	86.65
d2nt0a1	143	Glucosylceramidase {Human (Homo sapiens) [TaxId: 9	86.14
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.61
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	85.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	83.98
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	80.6

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=1e-30  Score=189.45  Aligned_cols=157  Identities=15%  Similarity=0.210  Sum_probs=132.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe--eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      -...+|++++|+|+|++||+|+.||.|+|||+++++  .+..+++|.++|.+++|+|++++|++++.|++|++||+.+.+
T Consensus         5 ~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_           5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CCCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            345789999999999999999999999999998775  567788999999999999999999999999999999997655


Q ss_pred             ceeEEee-CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCce----EEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         84 NFKTLQL-DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ----ELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        84 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      ....... .+...+.+++|+|+++++++++.+  +++|.+....    .......|...|.+++|+|++++|++|+.|++
T Consensus        85 ~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~  164 (371)
T d1k8kc_          85 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK  164 (371)
T ss_dssp             EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence            4333332 344579999999999999999877  6777764421    23345678999999999999999999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      |++|++
T Consensus       165 v~v~~~  170 (371)
T d1k8kc_         165 CRIFSA  170 (371)
T ss_dssp             EEEEEC
T ss_pred             EEEEee
Confidence            999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=3.6e-30  Score=182.26  Aligned_cols=156  Identities=22%  Similarity=0.356  Sum_probs=141.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .....+....+.+.+.++++|+.|+.+++||+++++++..+..|..+|.+++|+|++++|++|+.|+.+++||++..+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~  261 (340)
T d1tbga_         182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccc
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999877665


Q ss_pred             eEEee-CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 KTLQL-DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..+.. .+...+.+++|+|++.++++|+.|  +++|+...++.+..+.+|..+|++++|+|++++|++|+.|++|++||
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            55432 234569999999999999999877  78888888899999999999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.6e-29  Score=179.80  Aligned_cols=156  Identities=22%  Similarity=0.369  Sum_probs=136.5

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeee--eeccCCCCCEEEEEEccCCCEEEEEeC--CCeEEEEEccc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNV--TDFQLDAGPIQALSFSENGYYLATAAD--ENCVKLWDLRK   81 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~--d~~v~~wd~~~   81 (162)
                      .|...|++++|+|+|++||+|+.||+|+|||+++++..  ..+..|.++|.+++|+|+++++++++.  +..+++|++.+
T Consensus        56 ~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~  135 (311)
T d1nr0a1          56 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT  135 (311)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred             CCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccc
Confidence            46789999999999999999999999999999887644  557789999999999999999999986  45699999987


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCE-EEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEE
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTY-MAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      .+....+..+ ...|.+++|+|++++ +++|+.|  +++|+.+..+....+..|..+|.++.|+|+++++++++.|+.|+
T Consensus       136 ~~~~~~l~~h-~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~  214 (311)
T d1nr0a1         136 GTSNGNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV  214 (311)
T ss_dssp             CCBCBCCCCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccc-ccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccc
Confidence            7766666554 457999999999885 6777766  78888888888889999999999999999999999999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      +||+
T Consensus       215 ~~d~  218 (311)
T d1nr0a1         215 LYNG  218 (311)
T ss_dssp             EEET
T ss_pred             cccc
Confidence            9984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=9.5e-29  Score=175.70  Aligned_cols=156  Identities=13%  Similarity=0.242  Sum_probs=134.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCC--CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCE-EEEEeCCCeEEEEEcccC
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSD--SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYY-LATAADENCVKLWDLRKL   82 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~d--g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~d~~v~~wd~~~~   82 (162)
                      .+..+|.+++|+|+++++++++.+  ..+++|++++++....+..|...|.+++|+|++++ +++|+.|+.|++||+++.
T Consensus       100 ~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~  179 (311)
T d1nr0a1         100 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF  179 (311)
T ss_dssp             CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred             cccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccc
Confidence            356789999999999999998864  56999999999999999999999999999998875 888999999999999987


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEe-------ecCcccEEEEEECCCCceEEEeec
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMF-------NEHTAMVTGVRFGTHAHYLASSSM  153 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~-------~~h~~~v~~~~~s~~~~~l~s~s~  153 (162)
                      +....+.. +..+|.++.|+|++.++++++.|  +++|+......+..+       .+|...|.+++|+|++++|++|+.
T Consensus       180 ~~~~~~~~-~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~  258 (311)
T d1nr0a1         180 KFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA  258 (311)
T ss_dssp             EEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccc-ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeC
Confidence            76665554 45679999999999999999876  778887666555443       358899999999999999999999


Q ss_pred             CCeEEEeeC
Q psy12456        154 DRTLKLYSL  162 (162)
Q Consensus       154 D~~i~iw~~  162 (162)
                      |++|++||+
T Consensus       259 Dg~v~iwd~  267 (311)
T d1nr0a1         259 DKTIKIWNV  267 (311)
T ss_dssp             TSEEEEEET
T ss_pred             CCeEEEEEC
Confidence            999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.8e-28  Score=171.19  Aligned_cols=155  Identities=19%  Similarity=0.402  Sum_probs=140.7

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCC--------------------CEE
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENG--------------------YYL   65 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~--------------------~~l   65 (162)
                      .+...+.+++++|+++++++++.||.+++|+.++++.+..+..|...+..++|+|++                    .++
T Consensus       141 ~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (317)
T d1vyhc1         141 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL  220 (317)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred             cCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCcee
Confidence            456778999999999999999999999999999999999999999999999998754                    479


Q ss_pred             EEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECC
Q psy12456         66 ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGT  143 (162)
Q Consensus        66 ~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~  143 (162)
                      ++++.|+.|++||+++.+.+..+..+ ...+.+++++|++.+|++++.|  +++|+....+.+..+.+|...|++++|+|
T Consensus       221 ~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~  299 (317)
T d1vyhc1         221 LSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK  299 (317)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS
T ss_pred             EeccCCCEEEEEECCCCcEEEEEeCC-CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcC
Confidence            99999999999999988877777654 4579999999999999999877  77888888888999999999999999999


Q ss_pred             CCceEEEeecCCeEEEee
Q psy12456        144 HAHYLASSSMDRTLKLYS  161 (162)
Q Consensus       144 ~~~~l~s~s~D~~i~iw~  161 (162)
                      ++++|++|+.|++|++||
T Consensus       300 ~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         300 TAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEeC
Confidence            999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-28  Score=173.96  Aligned_cols=153  Identities=16%  Similarity=0.302  Sum_probs=134.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|++++++|++.++++|+.||.+++||+++++.+..+. |..+|.+++|+|+++++++++.|+.+++||++..+..
T Consensus       181 ~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  259 (337)
T d1gxra_         181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY  259 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred             ccccccccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc
Confidence            456789999999999999999999999999999999888776 6789999999999999999999999999999876654


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ..  ..+...+.+++|+|++++|++++.|  +++|+....+.+..+. |...|.+++|+|++++|++|+.|++|++|||
T Consensus       260 ~~--~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         260 QL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cc--cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            32  2345679999999999999999887  7788877777776654 7788999999999999999999999999995

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=5e-28  Score=169.69  Aligned_cols=155  Identities=17%  Similarity=0.258  Sum_probs=119.9

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc-CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc------
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ-LDAGPIQALSFSENGYYLATAADENCVKLWDL------   79 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~------   79 (162)
                      |..+|++++|+|+|++|++|+.||+|++||+++++.+..+. .|..+|.+++|+|++++ ++++.|+.+++|+.      
T Consensus        11 H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~   89 (299)
T d1nr0a2          11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVD   89 (299)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSC
T ss_pred             CCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCcccc
Confidence            66789999999999999999999999999999988887774 67788888888888753 34445566666663      


Q ss_pred             ----------------------------------------------------------------------------ccCc
Q psy12456         80 ----------------------------------------------------------------------------RKLK   83 (162)
Q Consensus        80 ----------------------------------------------------------------------------~~~~   83 (162)
                                                                                                  ++.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~  169 (299)
T d1nr0a2          90 SSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS  169 (299)
T ss_dssp             TTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                                        2211


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEE---EEeecCcccEEEEEECCCCceEEEeecCCeEE
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQEL---AMFNEHTAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      ........+...|.+++|+|++.++++++.+  +++|+......+   ..+..|..+|.+++|+|++++|++++.|+.|+
T Consensus       170 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~  249 (299)
T d1nr0a2         170 VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI  249 (299)
T ss_dssp             EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEE
Confidence            1111111233468899999999999999877  677776554333   34677999999999999999999999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      +||+
T Consensus       250 iwd~  253 (299)
T d1nr0a2         250 VWNM  253 (299)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.5e-27  Score=168.64  Aligned_cols=157  Identities=15%  Similarity=0.277  Sum_probs=135.3

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      -|...|++++|+|++++||+|+.||+|+|||+++++.+..++.|..+|.+++|+|++.++++|+.|+.+++|+.......
T Consensus        53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  132 (340)
T d1tbga_          53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN  132 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccc
Confidence            36778999999999999999999999999999999999999999999999999999999999999999999996432210


Q ss_pred             ----eEEe----------------------------------------eCCCCCeeEEEECCCCCEEEEeccc--EEEEE
Q psy12456         86 ----KTLQ----------------------------------------LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFL  119 (162)
Q Consensus        86 ----~~~~----------------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~  119 (162)
                          ..+.                                        ......+....+.+...++++++.+  +++|+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d  212 (340)
T d1tbga_         133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD  212 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEE
Confidence                0000                                        0122246677888899999998877  77888


Q ss_pred             eCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        120 CKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       120 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ....+.+..+.+|...|++++|+|++++|++++.|+.|++|++
T Consensus       213 ~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~  255 (340)
T d1tbga_         213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL  255 (340)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEee
Confidence            8888899999999999999999999999999999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-27  Score=169.82  Aligned_cols=155  Identities=15%  Similarity=0.229  Sum_probs=131.4

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee-----eeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN-----VTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~-----~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      .|...|++++|+|+|++||+|+ ||.|+|||++++..     ......|.++|.+++|+|++++|++++.|++|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            4678899999999999999987 89999999976532     22334688899999999999999999999999999997


Q ss_pred             cCcc--eeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCe
Q psy12456         81 KLKN--FKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRT  156 (162)
Q Consensus        81 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~  156 (162)
                      ..+.  ...+.. +...+..++|+|++.++++++.+  +++|+....+.......|...|.+++|++++..+++++.|+.
T Consensus       128 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~  206 (337)
T d1gxra_         128 APTPRIKAELTS-SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT  206 (337)
T ss_dssp             CC--EEEEEEEC-SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5443  233333 44568999999999999998877  778888888888888999999999999999999999999999


Q ss_pred             EEEeeC
Q psy12456        157 LKLYSL  162 (162)
Q Consensus       157 i~iw~~  162 (162)
                      +++||+
T Consensus       207 v~i~d~  212 (337)
T d1gxra_         207 VRSWDL  212 (337)
T ss_dssp             EEEEET
T ss_pred             cccccc
Confidence            999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.8e-27  Score=172.30  Aligned_cols=157  Identities=15%  Similarity=0.163  Sum_probs=130.9

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee--eeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN--VTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .|..+|++++|+|++++|++|+.|++|+|||+++++.  ...+..|..+|.+++|+|++++|++++.|+++++|++....
T Consensus        49 gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~  128 (371)
T d1k8kc_          49 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN  128 (371)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccc
Confidence            4677899999999999999999999999999987754  44456788899999999999999999999999999987544


Q ss_pred             ceeE---EeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC------------------ceEEEEeecCcccEEEEE
Q psy12456         84 NFKT---LQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ------------------WQELAMFNEHTAMVTGVR  140 (162)
Q Consensus        84 ~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~------------------~~~~~~~~~h~~~v~~~~  140 (162)
                      ....   ....+...|.+++|+|+++++++++.|  +++|+...                  .+.+.....|...|.+++
T Consensus       129 ~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  208 (371)
T d1k8kc_         129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC  208 (371)
T ss_dssp             TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred             ccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEE
Confidence            3222   222345679999999999999999887  67776422                  124556678999999999


Q ss_pred             ECCCCceEEEeecCCeEEEeeC
Q psy12456        141 FGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       141 ~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      |+|+++++++++.|+.|++||+
T Consensus       209 ~s~~g~~l~s~~~d~~i~iwd~  230 (371)
T d1k8kc_         209 FSANGSRVAWVSHDSTVCLADA  230 (371)
T ss_dssp             ECSSSSEEEEEETTTEEEEEEG
T ss_pred             eecccccccccccCCcceEEee
Confidence            9999999999999999999984

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.4e-27  Score=164.59  Aligned_cols=155  Identities=19%  Similarity=0.369  Sum_probs=140.3

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      |..+|++++|+|++++|++|+.||+|+|||+++++.+.+++.|..+|.+++|+|++.+++++..++.+..|+....+...
T Consensus        16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (317)
T d1vyhc1          16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR   95 (317)
T ss_dssp             CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE
T ss_pred             CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccccccc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999987666544


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      .+.. +...+.++.++|++..+++++.|  +++|+....+.+..+..|...+..++|+|++++|++++.|+.|++|++
T Consensus        96 ~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~  172 (317)
T d1vyhc1          96 TMHG-HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV  172 (317)
T ss_dssp             CCCC-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cccc-ccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEee
Confidence            4433 44568999999999999999887  678888888888889999999999999999999999999999999984

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.3e-26  Score=167.25  Aligned_cols=155  Identities=21%  Similarity=0.303  Sum_probs=125.5

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeec-------cCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF-------QLDAGPIQALSFSENGYYLATAADENCVKLWDLR   80 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~   80 (162)
                      ...+..+.+.+++++|++|+.||.|++||+++++.+..+       ..|.++|.+++|+|++++|++++.|+.|++||++
T Consensus       205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  284 (388)
T d1erja_         205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  284 (388)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEecc
Confidence            334444444558999999999999999999988776554       3577899999999999999999999999999997


Q ss_pred             cCccee-----------EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEE------
Q psy12456         81 KLKNFK-----------TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRF------  141 (162)
Q Consensus        81 ~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~------  141 (162)
                      +.+...           .....+...+.+++|+|++++|++|+.|  +++|+..+.+.+..+.+|...|.++++      
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~  364 (388)
T d1erja_         285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL  364 (388)
T ss_dssp             --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred             CCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCccc
Confidence            543221           1112345579999999999999999887  788888888999999999999999874      


Q ss_pred             CCCCceEEEeecCCeEEEeeC
Q psy12456        142 GTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       142 s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +|++++|+||+.|++|++|++
T Consensus       365 spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         365 GPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             CTTCEEEEEEETTSEEEEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEee
Confidence            678999999999999999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.8e-27  Score=170.39  Aligned_cols=155  Identities=24%  Similarity=0.409  Sum_probs=126.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeec------cCCCCCEEEEEEccCCCEEEEEeCCC---eEEE
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDF------QLDAGPIQALSFSENGYYLATAADEN---CVKL   76 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~------~~~~~~v~~i~~~~~~~~l~s~~~d~---~v~~   76 (162)
                      .....+++++|+|++ ++|+|+.||+|+|||+++++++..+      ..|..+|.+++|+|++++|++|+.|+   .|++
T Consensus       182 ~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~l  260 (393)
T d1sq9a_         182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL  260 (393)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred             CCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeee
Confidence            345568899999998 8899999999999999998877654      45788999999999999999999987   4899


Q ss_pred             EEcccCcceeEEee------------CCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCccc-------
Q psy12456         77 WDLRKLKNFKTLQL------------DPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAM-------  135 (162)
Q Consensus        77 wd~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~-------  135 (162)
                      ||+++.+.+..+..            .|...|.+++|+|++++|++++.|  +++|+..+.+.+..+++|...       
T Consensus       261 wd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~  340 (393)
T d1sq9a_         261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI  340 (393)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred             cccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccE
Confidence            99987665554431            245579999999999999999988  889998899999999988654       


Q ss_pred             --------------EEEEEECCCC----------ceEEEeecCCeEEEee
Q psy12456        136 --------------VTGVRFGTHA----------HYLASSSMDRTLKLYS  161 (162)
Q Consensus       136 --------------v~~~~~s~~~----------~~l~s~s~D~~i~iw~  161 (162)
                                    +.++.|.+.+          +.+++++.|+.|++|.
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         341 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             EEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence                          4455554432          4588899999999986

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.5e-26  Score=165.55  Aligned_cols=153  Identities=16%  Similarity=0.281  Sum_probs=120.2

Q ss_pred             CcEEEEEeCCC-----CcEEEEeeCCCcEEEEECCCCe------------------eeeeccCCCCCEEEEEEccCCCEE
Q psy12456          9 PTLTTAQLHPD-----GLIFGIGTSDSQVQIWDLKKQK------------------NVTDFQLDAGPIQALSFSENGYYL   65 (162)
Q Consensus         9 ~~v~~~~~~~~-----g~~~a~g~~dg~i~~wd~~~~~------------------~~~~~~~~~~~v~~i~~~~~~~~l   65 (162)
                      ..+..+++.++     +.++++++.||.+++||+....                  .......+...+.+++|+|++ +|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~l  198 (393)
T d1sq9a_         120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI  198 (393)
T ss_dssp             SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred             CceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EE
Confidence            34556666664     4689999999999999985321                  111222344568899999997 89


Q ss_pred             EEEeCCCeEEEEEcccCcceeEEee-----CCCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEEe------
Q psy12456         66 ATAADENCVKLWDLRKLKNFKTLQL-----DPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAMF------  129 (162)
Q Consensus        66 ~s~~~d~~v~~wd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~------  129 (162)
                      ++|+.|++|++||+++.+.+..++.     .+..+|.+++|+|++++|++|+.|     +++|+....+.+..+      
T Consensus       199 asgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~  278 (393)
T d1sq9a_         199 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS  278 (393)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred             EEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccccc
Confidence            9999999999999987766554432     245579999999999999999876     678887665554443      


Q ss_pred             -------ecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        130 -------NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       130 -------~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                             .+|...|++++|+|++++|+|+|.|++|++||+
T Consensus       279 ~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         279 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             ccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence                   479999999999999999999999999999995

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8e-26  Score=163.08  Aligned_cols=154  Identities=21%  Similarity=0.337  Sum_probs=128.2

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc------------------CCCCCEEEEEEccCCCEEEEE
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ------------------LDAGPIQALSFSENGYYLATA   68 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~------------------~~~~~v~~i~~~~~~~~l~s~   68 (162)
                      |...|++++|+|+|++||+|+ |+.|+|||+.+++.+..+.                  .|...|.+++|+|++++|++|
T Consensus        61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            678899999999999999986 8999999999888776654                  345569999999999999999


Q ss_pred             eCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCc
Q psy12456         69 ADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAH  146 (162)
Q Consensus        69 ~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~  146 (162)
                      +.|+.|++||....+....... +...+.++++++++..+++++.+  +++|+............+...+....+.++++
T Consensus       140 ~~dg~v~i~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (388)
T d1erja_         140 AEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK  218 (388)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred             cccccccccccccccccccccc-ccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCC
Confidence            9999999999988776666654 45579999999999999998877  77787777766666666666555554456889


Q ss_pred             eEEEeecCCeEEEeeC
Q psy12456        147 YLASSSMDRTLKLYSL  162 (162)
Q Consensus       147 ~l~s~s~D~~i~iw~~  162 (162)
                      +|++++.|+.|++|++
T Consensus       219 ~l~~~~~d~~i~i~~~  234 (388)
T d1erja_         219 YIAAGSLDRAVRVWDS  234 (388)
T ss_dssp             EEEEEETTSCEEEEET
T ss_pred             eEEEEcCCCeEEEeec
Confidence            9999999999999984

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=3.9e-26  Score=159.94  Aligned_cols=153  Identities=15%  Similarity=0.255  Sum_probs=121.6

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeee-eccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCccee
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVT-DFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~   86 (162)
                      ...+++++++|+++++++|+.||.+++||+++++... ....|..+|.+++|+|++++|++++.|+.|++||+.+.....
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  215 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA  215 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4567889999999999999999999999998876543 334688899999999999999999999999999997654332


Q ss_pred             ---EEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCce--EEEEee-cCcccEEEEEECCCCceEEEeecCCeEE
Q psy12456         87 ---TLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQ--ELAMFN-EHTAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        87 ---~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~--~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                         .+.. +...|.+++|+|++.++++++.|  +++|+.....  .+.... .+...|..+.| +++++|++++.|++|+
T Consensus       216 ~~~~~~~-h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~  293 (299)
T d1nr0a2         216 HTNSWTF-HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIK  293 (299)
T ss_dssp             CCCCCCC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEE
T ss_pred             ccccccc-cccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEE
Confidence               2222 34579999999999999999887  7788766543  222333 34556777755 5577899999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      +|||
T Consensus       294 iWdl  297 (299)
T d1nr0a2         294 FWNV  297 (299)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1e-24  Score=155.34  Aligned_cols=157  Identities=15%  Similarity=0.195  Sum_probs=131.3

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeC--CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCE-EEEEeCCCeEEEEEcccC
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTS--DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYY-LATAADENCVKLWDLRKL   82 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~d~~v~~wd~~~~   82 (162)
                      .+..+|++++|+|+|+++++++.  ++.+++|+.++++.+..+..|..+|.+++|+|++.+ +++++.|+.+++||++..
T Consensus       113 ~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  192 (325)
T d1pgua1         113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF  192 (325)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred             cccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccc
Confidence            35668999999999999887765  678999999999999999999999999999998764 778999999999999876


Q ss_pred             cceeEEeeC--CCCCeeEEEECCC-CCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEEC---CCCceEEEeecC
Q psy12456         83 KNFKTLQLD--PNYEIRDLCFDQS-GTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFG---THAHYLASSSMD  154 (162)
Q Consensus        83 ~~~~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~s~D  154 (162)
                      +.......+  +...|.+++|+|+ +.++++++.|  +++|+.+..+.+..+.+|..++..+.|+   |++++|++++.|
T Consensus       193 ~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D  272 (325)
T d1pgua1         193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD  272 (325)
T ss_dssp             EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT
T ss_pred             ccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCC
Confidence            654444322  3456999999996 6889988877  7888888888888999888887666555   689999999999


Q ss_pred             CeEEEeeC
Q psy12456        155 RTLKLYSL  162 (162)
Q Consensus       155 ~~i~iw~~  162 (162)
                      +.|++||+
T Consensus       273 ~~i~iwd~  280 (325)
T d1pgua1         273 ATIRVWDV  280 (325)
T ss_dssp             SEEEEEET
T ss_pred             CeEEEEEC
Confidence            99999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.8e-24  Score=154.00  Aligned_cols=157  Identities=20%  Similarity=0.335  Sum_probs=126.0

Q ss_pred             CCCCCcEEEEEeCC--CCcEEEEeeCCCcEEEEECCCCeee--------eeccCCCCCEEEEEEccCCCEEEEEeC--CC
Q psy12456          5 GAGGPTLTTAQLHP--DGLIFGIGTSDSQVQIWDLKKQKNV--------TDFQLDAGPIQALSFSENGYYLATAAD--EN   72 (162)
Q Consensus         5 ~~~~~~v~~~~~~~--~g~~~a~g~~dg~i~~wd~~~~~~~--------~~~~~~~~~v~~i~~~~~~~~l~s~~~--d~   72 (162)
                      |+++..|++++|+|  +|.++|+|+.||+|+|||++.++..        ..+..|.++|.+++|+++++++++++.  ++
T Consensus        60 gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~  139 (325)
T d1pgua1          60 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN  139 (325)
T ss_dssp             TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC
T ss_pred             CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccc
Confidence            56678899999998  6789999999999999999764322        234567889999999999999988764  67


Q ss_pred             eEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCE-EEEeccc--EEEEEeCCceEEEE---eecCcccEEEEEECCC-C
Q psy12456         73 CVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTY-MAVAGTD--VRVFLCKQWQELAM---FNEHTAMVTGVRFGTH-A  145 (162)
Q Consensus        73 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~--~~i~~~~~~~~~~~---~~~h~~~v~~~~~s~~-~  145 (162)
                      .+++|+..+.+.+..+.. +...+.+++|+|++.+ +++++.|  +++|+....+....   ...|...|.+++|+|+ +
T Consensus       140 ~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~  218 (325)
T d1pgua1         140 FGVFISWDSGNSLGEVSG-HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG  218 (325)
T ss_dssp             SEEEEETTTCCEEEECCS-CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred             eEEEEeecccccceeeee-cccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccc
Confidence            899999987777766654 4457999999999875 5667666  67777666554443   4567888999999996 6


Q ss_pred             ceEEEeecCCeEEEeeC
Q psy12456        146 HYLASSSMDRTLKLYSL  162 (162)
Q Consensus       146 ~~l~s~s~D~~i~iw~~  162 (162)
                      .++++++.|+.|++||+
T Consensus       219 ~~l~s~~~d~~i~iwd~  235 (325)
T d1pgua1         219 EFVITVGSDRKISCFDG  235 (325)
T ss_dssp             CEEEEEETTCCEEEEET
T ss_pred             eeccccccccceeeeee
Confidence            88999999999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.1e-24  Score=151.68  Aligned_cols=148  Identities=16%  Similarity=0.225  Sum_probs=119.1

Q ss_pred             EEeCCCCcEEEEeeCCC-cEEEEECCCCeeeeecc-CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeC
Q psy12456         14 AQLHPDGLIFGIGTSDS-QVQIWDLKKQKNVTDFQ-LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLD   91 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~dg-~i~~wd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~   91 (162)
                      ..++|++..+++++.|+ .+++|+++..+....+. .|..++.+++|+|++.+|++|+.|+.|++||+.+.+........
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~  203 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF  203 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc
Confidence            45677888888888875 69999998766655554 46788999999999999999999999999999876644332223


Q ss_pred             CCCCeeEEEECCC----------CCEEEEeccc--EEEEEeCC-ceEEEEeecCcccEEEEEECCCCceEEEeecCCeEE
Q psy12456         92 PNYEIRDLCFDQS----------GTYMAVAGTD--VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLK  158 (162)
Q Consensus        92 ~~~~v~~~~~~~~----------~~~~~~~~~~--~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~  158 (162)
                      +...+.+++|+|.          +.++++|+.|  +++|+... .+.+..+.+|...|+++.|+|++ .+++++.|++|+
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~  282 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIK  282 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEE
T ss_pred             cccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEE
Confidence            4557999999875          4689999887  77887655 45667778999999999999976 578999999999


Q ss_pred             EeeC
Q psy12456        159 LYSL  162 (162)
Q Consensus       159 iw~~  162 (162)
                      +|++
T Consensus       283 iW~i  286 (287)
T d1pgua2         283 RWNV  286 (287)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-24  Score=151.05  Aligned_cols=146  Identities=18%  Similarity=0.292  Sum_probs=119.9

Q ss_pred             EEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCC
Q psy12456         13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDP   92 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~   92 (162)
                      ...+++++.++++|+.||.|++||++.++.+..+..|...+.+++++  +++|++++.|+.|++||+...+....+..+.
T Consensus       180 ~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  257 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPN  257 (342)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred             cccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccc
Confidence            44556688999999999999999999999999999999999887775  4699999999999999998777665554433


Q ss_pred             --CCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEee-----cCcccEEEEEECCCCceEEEeecCCe----EEE
Q psy12456         93 --NYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFN-----EHTAMVTGVRFGTHAHYLASSSMDRT----LKL  159 (162)
Q Consensus        93 --~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~s~D~~----i~i  159 (162)
                        ...+.++.+  ++.++++++.|  +++|+.++.+.++.+.     +|...|++++|+|++.++++|+.||+    |++
T Consensus       258 ~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~  335 (342)
T d2ovrb2         258 KHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV  335 (342)
T ss_dssp             SCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred             eeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEE
Confidence              334555555  55788999887  7888888887776653     57788999999999999999999985    999


Q ss_pred             eeC
Q psy12456        160 YSL  162 (162)
Q Consensus       160 w~~  162 (162)
                      ||+
T Consensus       336 ~Df  338 (342)
T d2ovrb2         336 LDF  338 (342)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            985

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.7e-23  Score=147.81  Aligned_cols=76  Identities=20%  Similarity=0.371  Sum_probs=65.2

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL   82 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~   82 (162)
                      .|+....++++++  +|++||+|+.||+|+|||+++++.+.++++|.++|.+++|+|+ .+|++|+.|++|++|++...
T Consensus         9 ~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~   84 (355)
T d1nexb2           9 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKG   84 (355)
T ss_dssp             ECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTT
T ss_pred             CCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccc
Confidence            3566666787665  5789999999999999999999999999999999999999986 47888888888888887543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.5e-23  Score=146.27  Aligned_cols=151  Identities=13%  Similarity=0.181  Sum_probs=124.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .....+.++.++|++.++++++.||.|++||++++..+..+++|..+|.++++++  ++|++++.|++|++||+++.+. 
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-  275 (355)
T d1nexb2         199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR-  275 (355)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE-
T ss_pred             ccccccccccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccce-
Confidence            3556778899999999999999999999999999999999999999999999864  6899999999999999987553 


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEE-EeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELA-MFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                       .+..++.......++++++.++++|+.+ +++|+.++.+.+. .+.+|...|.+++|+|+ ..+++++.||+++||.
T Consensus       276 -~~~~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~  351 (355)
T d1nexb2         276 -KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEI  351 (355)
T ss_dssp             -EEEEECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEE
T ss_pred             -ecccccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEE
Confidence             3344444334445678888888887655 8899988887765 46789999999999986 5788899999876653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.2e-22  Score=137.22  Aligned_cols=151  Identities=19%  Similarity=0.338  Sum_probs=105.5

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      ...+...|+|++  ++|++||+|+.||+|+|||+++++++.++++|.++|.+++|  ++++|++|+.|+.+++|+++...
T Consensus        11 ~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          11 RSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             CCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccccc
Confidence            345667888865  57999999999999999999999999999999999998887  57799999999999999986543


Q ss_pred             ceeEEee------------------------------------------CCCCCeeEEEECCCCCEEEEeccc--EEEEE
Q psy12456         84 NFKTLQL------------------------------------------DPNYEIRDLCFDQSGTYMAVAGTD--VRVFL  119 (162)
Q Consensus        84 ~~~~~~~------------------------------------------~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~  119 (162)
                      .......                                          .+...+..+.+.  ...+.+++.|  +++|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d  164 (293)
T d1p22a2          87 MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWN  164 (293)
T ss_dssp             EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred             ccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeec
Confidence            2211100                                          011122222322  2334444444  56666


Q ss_pred             eCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        120 CKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       120 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ....+.+..+.+|...|..+.++  +.++++++.|++|++||+
T Consensus       165 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~  205 (293)
T d1p22a2         165 TSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI  205 (293)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             CCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEec
Confidence            66666666677777777766664  456777777777777764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-22  Score=140.21  Aligned_cols=152  Identities=17%  Similarity=0.317  Sum_probs=114.4

Q ss_pred             CCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          5 GAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         5 ~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      |+.+..+++  ++++|++||+|+.||+|+|||+++++++.++.+|.++|.+++|+|+  +|++++.|+++++|+......
T Consensus        14 GH~~~V~s~--~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~   89 (342)
T d2ovrb2          14 GHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGEC   89 (342)
T ss_dssp             CSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEE
T ss_pred             CcCCceEEE--EEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccc
Confidence            444444454  5667999999999999999999999999999999999999999875  899999999999999653221


Q ss_pred             eeEEee---------------------------------------------------------------------C----
Q psy12456         85 FKTLQL---------------------------------------------------------------------D----   91 (162)
Q Consensus        85 ~~~~~~---------------------------------------------------------------------~----   91 (162)
                      ......                                                                     .    
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~  169 (342)
T d2ovrb2          90 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC  169 (342)
T ss_dssp             EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEE
T ss_pred             eecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccccee
Confidence            100000                                                                     0    


Q ss_pred             ----CCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         92 ----PNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        92 ----~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                          ........++.+++.++++++.|  +++|+....+.+..+..|...+.+++++  ++++++++.|+.|++||+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~  244 (342)
T d2ovrb2         170 LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDI  244 (342)
T ss_dssp             EEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             eEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEec
Confidence                00011233455567788888877  7778877778888888899888888775  468899999999999984

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.9e-23  Score=144.96  Aligned_cols=160  Identities=12%  Similarity=0.102  Sum_probs=118.6

Q ss_pred             ccCCCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeee---eccCCCCCEEEEEEccC-CCEEEEEeCCCeEEEEE
Q psy12456          3 ASGAGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVT---DFQLDAGPIQALSFSEN-GYYLATAADENCVKLWD   78 (162)
Q Consensus         3 ~~~~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~---~~~~~~~~v~~i~~~~~-~~~l~s~~~d~~v~~wd   78 (162)
                      .-++|...|++++|+|++++||+|+.||+|+|||+++++...   ....|.++|.+++|+|+ +.+|++|+.|+++++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            457889999999999999999999999999999997654322   22358899999999986 56899999999999999


Q ss_pred             cccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCc----eEEEEeecC--cccEEEEEECCCCceEEE
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQW----QELAMFNEH--TAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~----~~~~~~~~h--~~~v~~~~~s~~~~~l~s  150 (162)
                      +...........+.........+.++...+++++.+  +++|+.+..    ........+  ........+.+.+..+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (342)
T d1yfqa_          86 LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV  165 (342)
T ss_dssp             SSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence            987665555444444444555667777888888777  556654322    122222222  223445566778889999


Q ss_pred             eecCCeEEEeeC
Q psy12456        151 SSMDRTLKLYSL  162 (162)
Q Consensus       151 ~s~D~~i~iw~~  162 (162)
                      ++.|+.|++|++
T Consensus       166 ~~~d~~i~~~~~  177 (342)
T d1yfqa_         166 GMNNSQVQWFRL  177 (342)
T ss_dssp             EESTTEEEEEES
T ss_pred             ecCCCcEEEEec
Confidence            999999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=4.9e-21  Score=136.06  Aligned_cols=153  Identities=14%  Similarity=0.086  Sum_probs=124.1

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCC--cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDS--QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      .++..|++++|+|||++|++++.+.  .|++||+++++.. .+..|...|.+++|+|++++|++++.++.+++|++...+
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            3577899999999999988776553  7899999877654 566788999999999999999999999999999998877


Q ss_pred             ceeEEeeCCCCCeeEEEECCCCCEEEEecc----------c--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEe
Q psy12456         84 NFKTLQLDPNYEIRDLCFDQSGTYMAVAGT----------D--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        84 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      ....+.. +...+.+++|+|+|++++.+..          +  +++|+....+. .....|...+..+.|+|++++|+++
T Consensus       119 ~~~~~~~-~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~  196 (360)
T d1k32a3         119 PTVIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYL  196 (360)
T ss_dssp             EEEEEEC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EECSCSSSBEEEEEECTTSCEEEEE
T ss_pred             eeeeeec-ccccccchhhccceeeeeeeccccccceeeccccceeeeccccCce-eeecccccccccccccCCCCEEEEE
Confidence            6665554 3446889999999999986542          2  45666655443 3445577778999999999999999


Q ss_pred             ecCCeEEEee
Q psy12456        152 SMDRTLKLYS  161 (162)
Q Consensus       152 s~D~~i~iw~  161 (162)
                      +.|+.+++|+
T Consensus       197 s~~~~~~~~d  206 (360)
T d1k32a3         197 SYRSLDPSPD  206 (360)
T ss_dssp             ESCCCCCEEC
T ss_pred             eCCCceEccc
Confidence            9999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=2.4e-21  Score=137.74  Aligned_cols=145  Identities=13%  Similarity=0.191  Sum_probs=116.7

Q ss_pred             EEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCC--eEEEEEcccCcceeEEe
Q psy12456         13 TAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADEN--CVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        13 ~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~--~v~~wd~~~~~~~~~~~   89 (162)
                      +-+||| ||+++|+++ +|+|.+||++.++.++.  .|...|.+++|+|||++|++++.+.  .|++||..+.+.. .+.
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~   82 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE   82 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence            457999 999999887 47999999988776653  5888999999999999998877653  7899999875533 333


Q ss_pred             eCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEee----------cCCeE
Q psy12456         90 LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSS----------MDRTL  157 (162)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s----------~D~~i  157 (162)
                       .+...+.+++|+|+++++++++.+  +.+|+....+....+..|...+.+++|+|++++|+.++          .++.+
T Consensus        83 -~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~  161 (360)
T d1k32a3          83 -ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  161 (360)
T ss_dssp             -CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             -CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccce
Confidence             345579999999999999999887  55666666777778888999999999999999998543          44568


Q ss_pred             EEeeC
Q psy12456        158 KLYSL  162 (162)
Q Consensus       158 ~iw~~  162 (162)
                      ++|++
T Consensus       162 ~v~d~  166 (360)
T d1k32a3         162 HVYDM  166 (360)
T ss_dssp             EEEET
T ss_pred             eeecc
Confidence            88874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.3e-19  Score=124.47  Aligned_cols=147  Identities=16%  Similarity=0.303  Sum_probs=117.8

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      .+...|....+.+  ..+++++.|+.+++||+++++.+..+..+...+..+.++  +.++++++.|++|++||+++.+.+
T Consensus       136 ~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~  211 (293)
T d1p22a2         136 GHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACL  211 (293)
T ss_dssp             CCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE
T ss_pred             ccccccccceecc--cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceee
Confidence            4455666666554  567889999999999999999999999998888877775  568999999999999999987777


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCC---------ceEEEEeecCcccEEEEEECCCCceEEEeecC
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQ---------WQELAMFNEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~---------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      .....+ ...+.  ++++++.++++++.|  +++|+...         ...+..+.+|...|++++|+  +++|+|+|.|
T Consensus       212 ~~~~~~-~~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~D  286 (293)
T d1p22a2         212 RVLEGH-EELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHD  286 (293)
T ss_dssp             EEECCC-SSCEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSS
T ss_pred             eeeccc-ceeee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecC
Confidence            666543 33444  456788899999887  67776422         24677889999999999994  6789999999


Q ss_pred             CeEEEee
Q psy12456        155 RTLKLYS  161 (162)
Q Consensus       155 ~~i~iw~  161 (162)
                      ++|++||
T Consensus       287 g~i~iWD  293 (293)
T d1p22a2         287 DTILIWD  293 (293)
T ss_dssp             SEEEEEC
T ss_pred             CEEEEeC
Confidence            9999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=7.6e-19  Score=121.81  Aligned_cols=153  Identities=14%  Similarity=0.222  Sum_probs=109.6

Q ss_pred             CCCCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC----------------------------------CeeeeeccCCCC
Q psy12456          6 AGGPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK----------------------------------QKNVTDFQLDAG   51 (162)
Q Consensus         6 ~~~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~----------------------------------~~~~~~~~~~~~   51 (162)
                      .|...|+++++++++ .+++++.|+++++|+...                                  ++.+..+..+ .
T Consensus        44 ~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  121 (287)
T d1pgua2          44 DHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN-S  121 (287)
T ss_dssp             CCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECS-S
T ss_pred             CCCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecccc-c
Confidence            345567777777654 456677777777776543                                  2222222221 2


Q ss_pred             CEEEEEEccCCCEEEEEeCCC-eEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEE-
Q psy12456         52 PIQALSFSENGYYLATAADEN-CVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELA-  127 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~~~d~-~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~-  127 (162)
                      +  ..++++++..+++++.|+ .+++|++...+........+...+.+++|+|++.++++++.+  +++|+....+... 
T Consensus       122 ~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         122 P--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             C--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             e--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccc
Confidence            2  245667778888887764 799999876554444444455679999999999999999877  7788877766544 


Q ss_pred             EeecCcccEEEEEECCC----------CceEEEeecCCeEEEeeC
Q psy12456        128 MFNEHTAMVTGVRFGTH----------AHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       128 ~~~~h~~~v~~~~~s~~----------~~~l~s~s~D~~i~iw~~  162 (162)
                      .+..|...|.+++|+|.          ++++++|+.|++|++||+
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~  244 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV  244 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEEC
Confidence            47889999999999875          468999999999999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2e-18  Score=120.57  Aligned_cols=156  Identities=13%  Similarity=0.089  Sum_probs=102.6

Q ss_pred             CCCcEEEEEeCCC-CcEEEEeeCCCcEEEEECCCCeeeeeccCCC-CCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          7 GGPTLTTAQLHPD-GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA-GPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         7 ~~~~v~~~~~~~~-g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      +..+|++++|+|+ +.++++|+.||.|++|++..+........+. .......+.++...+++++.|+++++||++....
T Consensus        55 h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~  134 (342)
T d1yfqa_          55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT
T ss_pred             CCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeecccccc
Confidence            6778999999985 5689999999999999998877766665443 3344556677889999999999999999864332


Q ss_pred             eeEEeeC-----CCCCeeEEEECCCC----------------------------------------------CEEEEecc
Q psy12456         85 FKTLQLD-----PNYEIRDLCFDQSG----------------------------------------------TYMAVAGT  113 (162)
Q Consensus        85 ~~~~~~~-----~~~~v~~~~~~~~~----------------------------------------------~~~~~~~~  113 (162)
                      .......     ........++.+.+                                              ..+++++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  214 (342)
T d1yfqa_         135 GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             BCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             ceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC
Confidence            1111100     00111222333333                                              34444444


Q ss_pred             c--EEEEEeCCc---------eEE------EEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456        114 D--VRVFLCKQW---------QEL------AMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus       114 ~--~~i~~~~~~---------~~~------~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      +  +.++.....         ...      .....|...|++++|+|++++|+||+.||.|++||+
T Consensus       215 dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEEC
Confidence            3  223322110         000      011346667899999999999999999999999995

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.2e-17  Score=122.97  Aligned_cols=154  Identities=12%  Similarity=0.077  Sum_probs=109.6

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee--eeecc---CCCCCEEEEEEccCCCEE-EEEeCCCeEEEEEccc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN--VTDFQ---LDAGPIQALSFSENGYYL-ATAADENCVKLWDLRK   81 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~--~~~~~---~~~~~v~~i~~~~~~~~l-~s~~~d~~v~~wd~~~   81 (162)
                      +..+..++|+|||+++++++.||.+++||+++++.  +..++   .|.+.+.+.+|+|||++| +++..++++++||..+
T Consensus        61 g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t  140 (432)
T d1qksa2          61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  140 (432)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcc
Confidence            34689999999999999999999999999988653  23332   344555666778899986 6788899999999988


Q ss_pred             CcceeEEeeC----------CCCCeeEEEECCCCCEEEEecc-c--EEEEEeCCceEEEEee-cCcccEEEEEECCCCce
Q psy12456         82 LKNFKTLQLD----------PNYEIRDLCFDQSGTYMAVAGT-D--VRVFLCKQWQELAMFN-EHTAMVTGVRFGTHAHY  147 (162)
Q Consensus        82 ~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~-~--~~i~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~  147 (162)
                      .+.+..+..+          +......+.++|++..++.+.. +  +.+++....+...... .+...+..++|+|++++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~  220 (432)
T d1qksa2         141 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY  220 (432)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred             ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCE
Confidence            7765544321          2233567889999987765543 3  5555554444333222 34567889999999998


Q ss_pred             EEEeecC-CeEEEee
Q psy12456        148 LASSSMD-RTLKLYS  161 (162)
Q Consensus       148 l~s~s~D-~~i~iw~  161 (162)
                      ++.++.+ ..+.+++
T Consensus       221 ~~va~~~~~~v~v~d  235 (432)
T d1qksa2         221 FITAANARNKLVVID  235 (432)
T ss_dssp             EEEEEGGGTEEEEEE
T ss_pred             EEEeccccceEEEee
Confidence            8776654 4677765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.76  E-value=8.2e-18  Score=123.27  Aligned_cols=155  Identities=13%  Similarity=0.160  Sum_probs=109.0

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeee--ecc---CCCCCEEEEEEccCCCEEEEE-eCCCeEEEEEccc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVT--DFQ---LDAGPIQALSFSENGYYLATA-ADENCVKLWDLRK   81 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~--~~~---~~~~~v~~i~~~~~~~~l~s~-~~d~~v~~wd~~~   81 (162)
                      +..+..++|+|||+++++++.||.+++||+.+++...  .++   .|.+.+.+++|+|||++++++ ..++++++||..+
T Consensus        61 g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          61 GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            3568999999999999999999999999999886443  222   344556677888999987555 4789999999765


Q ss_pred             CcceeEEee------------------------------------------------------CCCCCeeEEEECCCCCE
Q psy12456         82 LKNFKTLQL------------------------------------------------------DPNYEIRDLCFDQSGTY  107 (162)
Q Consensus        82 ~~~~~~~~~------------------------------------------------------~~~~~v~~~~~~~~~~~  107 (162)
                      .+.......                                                      .....+..+.|+|++++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  220 (426)
T d1hzua2         141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY  220 (426)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCE
T ss_pred             cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcE
Confidence            432211100                                                      01112457889999988


Q ss_pred             EEEeccc---EEEEEeC------------------------------------------------------CceEEEEee
Q psy12456        108 MAVAGTD---VRVFLCK------------------------------------------------------QWQELAMFN  130 (162)
Q Consensus       108 ~~~~~~~---~~i~~~~------------------------------------------------------~~~~~~~~~  130 (162)
                      +.++..+   +.++...                                                      .++....+.
T Consensus       221 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~  300 (426)
T d1hzua2         221 FMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ  300 (426)
T ss_dssp             EEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred             EEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEe
Confidence            8777532   2222110                                                      013344567


Q ss_pred             cCcccEEEEEECCCCceEE-------EeecCCeEEEeeC
Q psy12456        131 EHTAMVTGVRFGTHAHYLA-------SSSMDRTLKLYSL  162 (162)
Q Consensus       131 ~h~~~v~~~~~s~~~~~l~-------s~s~D~~i~iw~~  162 (162)
                      +|...+..++|+|++++++       +++.|++|++||+
T Consensus       301 g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~  339 (426)
T d1hzua2         301 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL  339 (426)
T ss_dssp             CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEET
T ss_pred             cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEEC
Confidence            7888899999999999998       4567899999985

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.76  E-value=7.6e-18  Score=123.44  Aligned_cols=132  Identities=11%  Similarity=0.061  Sum_probs=96.8

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeC----CCC
Q psy12456         19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLD----PNY   94 (162)
Q Consensus        19 ~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~----~~~   94 (162)
                      .+.++++...||+|+|||+.+++.+.+++.+. .+.+++|+|||+++++++.|+++++||+.+.+........    +..
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~  109 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS  109 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred             CeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcc
Confidence            34456778889999999999999999999875 5899999999999999999999999999877644332221    122


Q ss_pred             CeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecCccc-----------EEEEEECCCCceEEEe
Q psy12456         95 EIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHTAM-----------VTGVRFGTHAHYLASS  151 (162)
Q Consensus        95 ~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~~~-----------v~~~~~s~~~~~l~s~  151 (162)
                      .+.+++|+|+|+++++++..   +++|+......+.....|...           ...+.+++++..+...
T Consensus       110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence            35567788999998776533   778877777666666555433           4455566666555443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=1.4e-16  Score=112.06  Aligned_cols=74  Identities=9%  Similarity=-0.019  Sum_probs=62.3

Q ss_pred             EEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC-CCCCEEEEEEccCCCEE-EEEeCCCeEEEEEcccCcceeE
Q psy12456         14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL-DAGPIQALSFSENGYYL-ATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l-~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      +++++++++|++++.|++|.+||+++++.+.+++. +...+.+++|+|||+++ +++..++.|.+||+.+.+.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence            46899999999999999999999999999998874 44556799999999987 5556789999999987655443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=2.3e-16  Score=110.51  Aligned_cols=66  Identities=11%  Similarity=-0.050  Sum_probs=55.9

Q ss_pred             eeEEEECCCCCEEEEecccEEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEeeC
Q psy12456         96 IRDLCFDQSGTYMAVAGTDVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYSL  162 (162)
Q Consensus        96 v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~~  162 (162)
                      ...+.++|++.++..++..+++|+..+.+.+..+. +...+.+++|+|++++|++++.|++|++||+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         243 YFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             eEEEEecccceEEEEccccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            44567888888888887779999998888887765 4566889999999999999999999999985

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.74  E-value=5.3e-16  Score=114.12  Aligned_cols=147  Identities=10%  Similarity=0.033  Sum_probs=109.9

Q ss_pred             EeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce--eEEee--
Q psy12456         15 QLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF--KTLQL--   90 (162)
Q Consensus        15 ~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~--~~~~~--   90 (162)
                      +.+++..++++.+.||+|.|||.++++.+..+..+. .+..++|+|||+++++++.|+++++||+.+.+..  .....  
T Consensus        27 ~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~  105 (432)
T d1qksa2          27 DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS  105 (432)
T ss_dssp             CCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred             cCCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence            345555567899999999999999999999998774 6899999999999999999999999999875532  22221  


Q ss_pred             CCCCCeeEEEECCCCCEEEE-eccc--EEEEEeCCceEEEEeecC-----------cccEEEEEECCCCceE-EEeecCC
Q psy12456         91 DPNYEIRDLCFDQSGTYMAV-AGTD--VRVFLCKQWQELAMFNEH-----------TAMVTGVRFGTHAHYL-ASSSMDR  155 (162)
Q Consensus        91 ~~~~~v~~~~~~~~~~~~~~-~~~~--~~i~~~~~~~~~~~~~~h-----------~~~v~~~~~s~~~~~l-~s~s~D~  155 (162)
                      .+...+.+..|+|+|+++++ ++.+  +++|+..+.+.+..+..|           ......+.++|++..+ ++...++
T Consensus       106 ~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~  185 (432)
T d1qksa2         106 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG  185 (432)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCC
Confidence            12223455577889998754 4433  888888777777665543           3446678899998765 5667788


Q ss_pred             eEEEeeC
Q psy12456        156 TLKLYSL  162 (162)
Q Consensus       156 ~i~iw~~  162 (162)
                      .|.+|+.
T Consensus       186 ~i~~~d~  192 (432)
T d1qksa2         186 KILLVDY  192 (432)
T ss_dssp             EEEEEET
T ss_pred             eEEEEEc
Confidence            8988873

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.71  E-value=2.9e-15  Score=103.48  Aligned_cols=137  Identities=12%  Similarity=0.144  Sum_probs=107.0

Q ss_pred             EEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEE-EEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEE
Q psy12456         22 IFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYL-ATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLC  100 (162)
Q Consensus        22 ~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~  100 (162)
                      .+++++.|++|.+||+++++.+.+++... ....++|+|||++| ++++.++.|++||+.+.+.+..+..+.  .+..+.
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g~-~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~--~~~~~~   80 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVA   80 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEECCC-CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc--cccccc
Confidence            35667889999999999999999988654 46789999999987 566788999999999888777766543  478899


Q ss_pred             ECCCCCEEEEeccc---EEEEEeCCceEEEEeecCcccEEEEEECCCCceEE-EeecCCeEEEeeC
Q psy12456        101 FDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLA-SSSMDRTLKLYSL  162 (162)
Q Consensus       101 ~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~D~~i~iw~~  162 (162)
                      +++++.++++.+.+   ..+++....+....+..+. ....+.|+|+++.++ ++..|+.+.+|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~  145 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINT  145 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             cccccccccccccccceeeecccccceeeeeccccc-cceEEEeecCCCeeeeeeccccceeeeec
Confidence            99999877665443   5666666666676666554 567889999998764 5566888888873

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=9.3e-16  Score=107.37  Aligned_cols=138  Identities=12%  Similarity=0.102  Sum_probs=105.1

Q ss_pred             cEEEEeeCCCcEEEEECCCCeeeeeccCC--CCCEEEEEEccCCCEE-EEEeCCCeEEEEEcccCcceeEEeeCCC----
Q psy12456         21 LIFGIGTSDSQVQIWDLKKQKNVTDFQLD--AGPIQALSFSENGYYL-ATAADENCVKLWDLRKLKNFKTLQLDPN----   93 (162)
Q Consensus        21 ~~~a~g~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l-~s~~~d~~v~~wd~~~~~~~~~~~~~~~----   93 (162)
                      +|+++++.|++|.+||+++++.+.+++.+  ...+.+++|+|||+++ ++++.++.|.+||+.+.+.+.....+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            58999999999999999999999988754  3456789999999987 5667899999999998887666554321    


Q ss_pred             CCeeEEEECCCCCEEEEeccc--------------EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         94 YEIRDLCFDQSGTYMAVAGTD--------------VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        94 ~~v~~~~~~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      ..+..++|+|++++++++..+              ..+++....+....+..+ ..+..+.|+|+++++++++.|  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~~~  158 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--LHV  158 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--EEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC--cce
Confidence            124578999999999887643              234445555555555543 457889999999999888755  556


Q ss_pred             ee
Q psy12456        160 YS  161 (162)
Q Consensus       160 w~  161 (162)
                      ||
T Consensus       159 ~d  160 (337)
T d1pbyb_         159 MD  160 (337)
T ss_dssp             EE
T ss_pred             ee
Confidence            65

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.67  E-value=5.3e-14  Score=97.00  Aligned_cols=149  Identities=13%  Similarity=0.146  Sum_probs=113.3

Q ss_pred             CcEEEEEeCCCCcEE-EEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEE-EeCCCeEEEEEcccCccee
Q psy12456          9 PTLTTAQLHPDGLIF-GIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLAT-AADENCVKLWDLRKLKNFK   86 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~-a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~d~~v~~wd~~~~~~~~   86 (162)
                      ..+..++++|||+++ +++..++.|++||+.+++.+..+..+. ....++|++++.+++. +..++.+.+|+..+.+...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeee
Confidence            346789999999976 567789999999999999999998775 4678999999886554 5567889999998776666


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEecc-c--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecC-CeEEEee
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGT-D--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD-RTLKLYS  161 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D-~~i~iw~  161 (162)
                      .....  ....+++++|++..++.... +  ..+++......+..+..+. .+..+.++|+++.+..++.+ +.+.+|+
T Consensus       111 ~~~~~--~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (301)
T d1l0qa2         111 TVKTG--KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVID  186 (301)
T ss_dssp             EEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ecccc--ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCC-CceEEEeeccccceeeeccccccccccc
Confidence            55432  34788999999988766543 3  5667777777776666554 47889999999888777665 4555554

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=5.2e-15  Score=103.65  Aligned_cols=139  Identities=14%  Similarity=0.188  Sum_probs=98.1

Q ss_pred             EEEEeeCCCcEEEEECCCCeee---eeccCCCCCEEEEEEccCCCEEEEE-eCCCeEEEEEcccCcceeEE--eeCCCCC
Q psy12456         22 IFGIGTSDSQVQIWDLKKQKNV---TDFQLDAGPIQALSFSENGYYLATA-ADENCVKLWDLRKLKNFKTL--QLDPNYE   95 (162)
Q Consensus        22 ~~a~g~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~s~-~~d~~v~~wd~~~~~~~~~~--~~~~~~~   95 (162)
                      +++++..|++|++||++....+   ..+ .+.+.+..|+|+|||++|+++ ..|+.|++|++.........  .......
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE-cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            5678889999999999765333   333 356788999999999998555 45899999999754432222  1223334


Q ss_pred             eeEEEECCCCCEEEEeccc---EEEEEeCCceE--EEEeecCcccEEEEEECCCCceEEEeec-CCeEEEee
Q psy12456         96 IRDLCFDQSGTYMAVAGTD---VRVFLCKQWQE--LAMFNEHTAMVTGVRFGTHAHYLASSSM-DRTLKLYS  161 (162)
Q Consensus        96 v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~-D~~i~iw~  161 (162)
                      +..++|+|+|+++++++.+   +.++.......  ......+...+.++.|+|++++++.++. +..|.+|+
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~  156 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT  156 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEE
Confidence            6789999999999998754   45555443322  2334566777889999999998877764 45677776

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.57  E-value=3e-13  Score=96.28  Aligned_cols=153  Identities=12%  Similarity=-0.024  Sum_probs=107.9

Q ss_pred             cCCCCCcEEEEEeCCCCcEEEEe-----eCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe---------
Q psy12456          4 SGAGGPTLTTAQLHPDGLIFGIG-----TSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA---------   69 (162)
Q Consensus         4 ~~~~~~~v~~~~~~~~g~~~a~g-----~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~---------   69 (162)
                      .+....++..++++|||+.+++.     +.++.+.+||..+++.+..+..+..+  .++|+|||++|++++         
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            45667778899999999988764     33467999999999999988776544  689999999998875         


Q ss_pred             -CCCeEEEEEcccCcceeEEeeCCCC------CeeEEEECCCCCEEEEeccc----EEEEEeCCceEEEEeecCcccEEE
Q psy12456         70 -DENCVKLWDLRKLKNFKTLQLDPNY------EIRDLCFDQSGTYMAVAGTD----VRVFLCKQWQELAMFNEHTAMVTG  138 (162)
Q Consensus        70 -~d~~v~~wd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~~h~~~v~~  138 (162)
                       .++.|.+||..+.+.+.....+...      ....+.|+++++.+.....+    ..++.....+..    .+......
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  169 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD----QLLSSPTC  169 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE----EEecccee
Confidence             3578999999988776655433211      12446777887766554432    334433333322    23334567


Q ss_pred             EEECCCCce-EEEeecCCeEEEeeC
Q psy12456        139 VRFGTHAHY-LASSSMDRTLKLYSL  162 (162)
Q Consensus       139 ~~~s~~~~~-l~s~s~D~~i~iw~~  162 (162)
                      +.|+|+++. +++.+.|+++.+|+.
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~  194 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEc
Confidence            889998864 478889999999974

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=8.4e-12  Score=86.96  Aligned_cols=155  Identities=10%  Similarity=0.127  Sum_probs=102.0

Q ss_pred             CCCcEEEEEeCCCCcEEEE-eeCCCcEEEEECCCCeeeeecc---CCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEccc
Q psy12456          7 GGPTLTTAQLHPDGLIFGI-GTSDSQVQIWDLKKQKNVTDFQ---LDAGPIQALSFSENGYYLATAAD-ENCVKLWDLRK   81 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~-g~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~-d~~v~~wd~~~   81 (162)
                      ++..++.++|+|||++|++ +..|+.|++|++........+.   .+...+..++|+|||++|++++. ++.+.+|+...
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence            3456789999999998854 4558999999997654332221   22334567999999999999885 67899998765


Q ss_pred             CcceeEEe-eCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCceEE-----E-EeecCcccEEEEEECCCCceEEEe
Q psy12456         82 LKNFKTLQ-LDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQEL-----A-MFNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        82 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~-----~-~~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                      ........ ......+.++.++|++++++.++..   +.++........     . ...........+.|++++.++...
T Consensus       115 ~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred             ccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEee
Confidence            44332222 2233457889999999998887654   555554432111     1 112334556789999998877554


Q ss_pred             e-cCCeEEEee
Q psy12456        152 S-MDRTLKLYS  161 (162)
Q Consensus       152 s-~D~~i~iw~  161 (162)
                      . ..+...+|+
T Consensus       195 ~~~~~~~~v~~  205 (333)
T d1ri6a_         195 NELNSSVDVWE  205 (333)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ccccCceEEEe
Confidence            4 444555554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.45  E-value=3.1e-13  Score=99.61  Aligned_cols=144  Identities=11%  Similarity=0.129  Sum_probs=100.5

Q ss_pred             EEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc-----CCCCCEEEEEEccCCCEEEEEeC---------CCeEEEEE
Q psy12456         13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ-----LDAGPIQALSFSENGYYLATAAD---------ENCVKLWD   78 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~l~s~~~---------d~~v~~wd   78 (162)
                      .+.|.++++++..  .|+.+.+||+.+++....+.     .|...|.+++||||+++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4679999998864  47889999999998765443     44567999999999999998854         46788999


Q ss_pred             cccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEeec------------------CcccEEEE
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMFNE------------------HTAMVTGV  139 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~------------------h~~~v~~~  139 (162)
                      +.+.+. ..+..+ ...+....|||+|+++|..... +.++.....+..+....                  ..+....+
T Consensus        99 ~~~~~~-~~l~~~-~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          99 LNKRQL-ITEERI-PNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             TTTTEE-CCSSCC-CTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             CCCCcc-cccccC-CccccccccccCcceeeEeecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            987553 223332 3458899999999999987544 44444444433322211                  12234568


Q ss_pred             EECCCCceEEEeecCCe-EEEe
Q psy12456        140 RFGTHAHYLASSSMDRT-LKLY  160 (162)
Q Consensus       140 ~~s~~~~~l~s~s~D~~-i~iw  160 (162)
                      .|||||++++....|.+ ++.|
T Consensus       177 ~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         177 WWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             EECTTSSEEEEEEEECTTCCEE
T ss_pred             EECCCCCccceeEecCCcCceE
Confidence            89999999999876643 4443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.40  E-value=8.8e-12  Score=87.77  Aligned_cols=115  Identities=13%  Similarity=0.054  Sum_probs=82.1

Q ss_pred             cEEEEEeCCCCcEEEEee-----CCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe----------CCCeE
Q psy12456         10 TLTTAQLHPDGLIFGIGT-----SDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA----------DENCV   74 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~-----~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~d~~v   74 (162)
                      +++..+.+|||+.+++..     .++++.+||..+++.+.++..+..+  .++|+|||++|+.++          .|+.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            344456789999887653     4567999999999999988866554  689999999887654          47889


Q ss_pred             EEEEcccCcceeEEeeCCC------CCeeEEEECCCCCEEEEeccc----EEEEEeCCceEE
Q psy12456         75 KLWDLRKLKNFKTLQLDPN------YEIRDLCFDQSGTYMAVAGTD----VRVFLCKQWQEL  126 (162)
Q Consensus        75 ~~wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~  126 (162)
                      ++||..+.+.......+..      .....+.|+|++.++..++..    ..+++....+.+
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~  142 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK  142 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEe
Confidence            9999998777665543221      123567899999988776532    455555444433

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=8.7e-12  Score=87.80  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=53.0

Q ss_pred             EEEeCCCCcEEEEe----------eCCCcEEEEECCCCeeeeeccCCCC-------CEEEEEEccCCCEEEEEe--CCCe
Q psy12456         13 TAQLHPDGLIFGIG----------TSDSQVQIWDLKKQKNVTDFQLDAG-------PIQALSFSENGYYLATAA--DENC   73 (162)
Q Consensus        13 ~~~~~~~g~~~a~g----------~~dg~i~~wd~~~~~~~~~~~~~~~-------~v~~i~~~~~~~~l~s~~--~d~~   73 (162)
                      .++|+|||+++++.          ..|+.|++||+++++.+..+..+..       ....++|+|++++++.++  .+..
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~  130 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  130 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence            58999999988764          4478999999999988877654321       224578999999887765  4567


Q ss_pred             EEEEEcccCc
Q psy12456         74 VKLWDLRKLK   83 (162)
Q Consensus        74 v~~wd~~~~~   83 (162)
                      +.+||..+.+
T Consensus       131 ~~~~~~~~~~  140 (355)
T d2bbkh_         131 VGVVDLEGKA  140 (355)
T ss_dssp             EEEEETTTTE
T ss_pred             eeeeecCCCc
Confidence            8888876544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=9.4e-12  Score=88.79  Aligned_cols=72  Identities=11%  Similarity=0.122  Sum_probs=55.9

Q ss_pred             EEEeCCCCcEEEEee----------CCCcEEEEECCCCeeeeeccCCCC-------CEEEEEEccCCCEEEEEe-CCCeE
Q psy12456         13 TAQLHPDGLIFGIGT----------SDSQVQIWDLKKQKNVTDFQLDAG-------PIQALSFSENGYYLATAA-DENCV   74 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~----------~dg~i~~wd~~~~~~~~~~~~~~~-------~v~~i~~~~~~~~l~s~~-~d~~v   74 (162)
                      .++++|||+.+++.+          .|+.|++||..+++++..+..+..       ....++|+|||++++.++ .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            578999999888754          477899999999998887754422       123589999999998876 56899


Q ss_pred             EEEEcccCcc
Q psy12456         75 KLWDLRKLKN   84 (162)
Q Consensus        75 ~~wd~~~~~~   84 (162)
                      .+||+.+.+.
T Consensus       149 ~~~d~~~~~~  158 (368)
T d1mdah_         149 AGLSVPGASD  158 (368)
T ss_dssp             EEEEETTTEE
T ss_pred             EEEECCCCcE
Confidence            9999876543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.38  E-value=5.8e-12  Score=87.93  Aligned_cols=97  Identities=6%  Similarity=0.007  Sum_probs=76.8

Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEec-cc--EEEEEeCCceEEEEeecC
Q psy12456         56 LSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG-TD--VRVFLCKQWQELAMFNEH  132 (162)
Q Consensus        56 i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~--~~i~~~~~~~~~~~~~~h  132 (162)
                      ++|++++++|++++.|++|.+||+.+.+.+.+++..+...+..++|+|+|+++.+++ .+  +.+|+..+.+.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            478999999999999999999999998888877765555578999999999875544 33  778888888777665432


Q ss_pred             c------ccEEEEEECCCCceEEEee
Q psy12456        133 T------AMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus       133 ~------~~v~~~~~s~~~~~l~s~s  152 (162)
                      .      ..+..++|+||++++..++
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEe
Confidence            2      2356789999999887665

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.23  E-value=2.6e-09  Score=75.49  Aligned_cols=150  Identities=11%  Similarity=0.003  Sum_probs=97.0

Q ss_pred             EEEEEeCCCCcE-EEEeeCCCcEEEEECCCCeeeeeccCC------CCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCc
Q psy12456         11 LTTAQLHPDGLI-FGIGTSDSQVQIWDLKKQKNVTDFQLD------AGPIQALSFSENGYYLATAADENCVKLWDLRKLK   83 (162)
Q Consensus        11 v~~~~~~~~g~~-~a~g~~dg~i~~wd~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~   83 (162)
                      ..++.++|+|+. +++.+.||++.+||...++.......+      ........+++++. ++..+.++.+.+|+.....
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAG  245 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCe
Confidence            457789998874 578889999999999887766554322      12234455666654 4455678889999886543


Q ss_pred             ceeEEe--eC---------CCCCeeEEEECCCCCEEEEecc------------cEEEEEeCCceEEEEeecCcccEEEEE
Q psy12456         84 NFKTLQ--LD---------PNYEIRDLCFDQSGTYMAVAGT------------DVRVFLCKQWQELAMFNEHTAMVTGVR  140 (162)
Q Consensus        84 ~~~~~~--~~---------~~~~v~~~~~~~~~~~~~~~~~------------~~~i~~~~~~~~~~~~~~h~~~v~~~~  140 (162)
                      ......  ..         .......+++++++..++....            .+.+++..+.+.+..+. +...+.+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a  324 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS  324 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEE
Confidence            221111  10         0112344566776665544322            14555556666666554 556789999


Q ss_pred             ECCCCc--eEEEeecCCeEEEeeC
Q psy12456        141 FGTHAH--YLASSSMDRTLKLYSL  162 (162)
Q Consensus       141 ~s~~~~--~l~s~s~D~~i~iw~~  162 (162)
                      |+||++  ++++++.|++|++||+
T Consensus       325 ~spDG~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         325 VAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEEC
Confidence            999998  4578999999999995

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.13  E-value=2.8e-09  Score=77.76  Aligned_cols=152  Identities=14%  Similarity=0.163  Sum_probs=101.7

Q ss_pred             CCcEEEEEeCCCCcEE-EEeeCCCcEEEEECCCCeeeeeccC-CCCCEEEEEEccCCC--EEEEEeCCC-----------
Q psy12456          8 GPTLTTAQLHPDGLIF-GIGTSDSQVQIWDLKKQKNVTDFQL-DAGPIQALSFSENGY--YLATAADEN-----------   72 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~-a~g~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~i~~~~~~~--~l~s~~~d~-----------   72 (162)
                      .+.......+|||+++ +....++.|.++|+++.+....++. .......++|+|+++  |++..+.+.           
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~  150 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS  150 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence            3566777788999987 4555789999999999988776653 346788999999987  555544432           


Q ss_pred             ------eEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-----------------EEEEEe---------
Q psy12456         73 ------CVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-----------------VRVFLC---------  120 (162)
Q Consensus        73 ------~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------~~i~~~---------  120 (162)
                            .+..+|..+++.........  ....+.++|+|+++.+.+.+                 +.+..+         
T Consensus       151 ~~~~~~~~~~iD~~t~~v~~qI~v~~--~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~d  228 (441)
T d1qnia2         151 LDNSYTMFTAIDAETMDVAWQVIVDG--NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKA  228 (441)
T ss_dssp             GGGEEEEEEEEETTTCSEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHT
T ss_pred             cccccceEEeecCccceeeEEEecCC--CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecC
Confidence                  23457776655544444332  36788999999998877532                 111111         


Q ss_pred             -----------------CCceEEEEeecCcccEEEEEECCCCceE-EEeecCCeEEEeeC
Q psy12456        121 -----------------KQWQELAMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTLKLYSL  162 (162)
Q Consensus       121 -----------------~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iw~~  162 (162)
                                       ...+.+..+...+. ...+.++|||+++ +++..|++|.+||+
T Consensus       229 Gk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         229 GNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             TCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             CCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence                             11112233333333 4678999999976 66788999999985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.10  E-value=9.9e-10  Score=78.09  Aligned_cols=120  Identities=6%  Similarity=-0.141  Sum_probs=84.8

Q ss_pred             EEEEeCCCCcE--E-EEeeCCCc--EEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe----------CCCeEEE
Q psy12456         12 TTAQLHPDGLI--F-GIGTSDSQ--VQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA----------DENCVKL   76 (162)
Q Consensus        12 ~~~~~~~~g~~--~-a~g~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~----------~d~~v~~   76 (162)
                      ..++..++++.  + +....+|.  +.+||..+++.+.....+..+  .++|+||+++++..+          .|++|.+
T Consensus        23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v  100 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEV  100 (368)
T ss_dssp             BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred             cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEE
Confidence            34456777774  3 23444555  666699999998888776655  589999999888764          4778999


Q ss_pred             EEcccCcceeEEeeCCC------CCeeEEEECCCCCEEEEeccc---EEEEEeCCceEEEEeecCc
Q psy12456         77 WDLRKLKNFKTLQLDPN------YEIRDLCFDQSGTYMAVAGTD---VRVFLCKQWQELAMFNEHT  133 (162)
Q Consensus        77 wd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~h~  133 (162)
                      ||..+.+.+.....+..      .....++|+|+|+++++++.+   +.+|+....+.+..+..+.
T Consensus       101 ~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~  166 (368)
T d1mdah_         101 FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS  166 (368)
T ss_dssp             ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS
T ss_pred             EECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC
Confidence            99998887766654321      113468999999999887643   7788888877777665443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.09  E-value=4.7e-10  Score=82.24  Aligned_cols=106  Identities=19%  Similarity=0.199  Sum_probs=79.7

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeC---------CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTS---------DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLW   77 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~w   77 (162)
                      ....|.+..|+|||++++.++.         ++.+.+||+.+++. ..+..+...+..++|||||++++... ++.+.+|
T Consensus        60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~  137 (470)
T d2bgra1          60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVK  137 (470)
T ss_dssp             SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEE
T ss_pred             ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEee-cccceEE
Confidence            4567899999999999998753         56789999998764 45777788899999999999999865 5679999


Q ss_pred             EcccCcceeEEeeC-----------------CCCCeeEEEECCCCCEEEEeccc
Q psy12456         78 DLRKLKNFKTLQLD-----------------PNYEIRDLCFDQSGTYMAVAGTD  114 (162)
Q Consensus        78 d~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~  114 (162)
                      +....+..+.....                 .......+.|+|+|++++....|
T Consensus       138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            98765543322111                 11123567899999999998654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.04  E-value=3.7e-08  Score=70.23  Aligned_cols=156  Identities=11%  Similarity=0.101  Sum_probs=95.5

Q ss_pred             CCCcEEEEEeCCCCcEEEEeeC-CCcEEEEECCCCe-e--eeecc--CCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEc
Q psy12456          7 GGPTLTTAQLHPDGLIFGIGTS-DSQVQIWDLKKQK-N--VTDFQ--LDAGPIQALSFSENGYYLATAA-DENCVKLWDL   79 (162)
Q Consensus         7 ~~~~v~~~~~~~~g~~~a~g~~-dg~i~~wd~~~~~-~--~~~~~--~~~~~v~~i~~~~~~~~l~s~~-~d~~v~~wd~   79 (162)
                      .+..+.++.|+|||+++++... ..+|.+|+..... .  .....  ......+.++|+|+++++.... .+++|.+|++
T Consensus       143 ~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            3445678999999997777664 4678888765432 1  11111  2235678999999999875555 5789999998


Q ss_pred             ccCccee-----EEeeC-------------CCCCeeEEEECCCCCEEEEeccc--------EEEEEeCCceEE------E
Q psy12456         80 RKLKNFK-----TLQLD-------------PNYEIRDLCFDQSGTYMAVAGTD--------VRVFLCKQWQEL------A  127 (162)
Q Consensus        80 ~~~~~~~-----~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~~~------~  127 (162)
                      ...+...     ....-             .......+.++|+|+++.++...        +..+.......+      .
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            6543221     11110             01124568899999998887431        333333221111      1


Q ss_pred             EeecCcccEEEEEECC-CCceEEEe-ecCCeEEEeeC
Q psy12456        128 MFNEHTAMVTGVRFGT-HAHYLASS-SMDRTLKLYSL  162 (162)
Q Consensus       128 ~~~~h~~~v~~~~~s~-~~~~l~s~-s~D~~i~iw~~  162 (162)
                      ..........+++++| ++++|+.+ ..++.|.+|++
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            1112233456789998 78877544 56789999963

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.93  E-value=2e-08  Score=73.17  Aligned_cols=132  Identities=12%  Similarity=0.098  Sum_probs=88.7

Q ss_pred             EEEEeeCCCcEEEEECCCCeeeeeccC------------------------------CCCCEEEEEEccCCCEEEEEe-C
Q psy12456         22 IFGIGTSDSQVQIWDLKKQKNVTDFQL------------------------------DAGPIQALSFSENGYYLATAA-D   70 (162)
Q Consensus        22 ~~a~g~~dg~i~~wd~~~~~~~~~~~~------------------------------~~~~v~~i~~~~~~~~l~s~~-~   70 (162)
                      .+++|+.+|+|++||+.+++.++++..                              |..........|||++|+.++ .
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~   92 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA   92 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence            378888999999999998887766432                              111233344578999986665 6


Q ss_pred             CCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC--EEEEeccc-E------------------EEEEeCCceEEEEe
Q psy12456         71 ENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT--YMAVAGTD-V------------------RVFLCKQWQELAMF  129 (162)
Q Consensus        71 d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~-~------------------~i~~~~~~~~~~~~  129 (162)
                      +..|.++|+++++............+..++|+|+++  |++..+.+ +                  ..++..+.+...++
T Consensus        93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            789999999998877766554455689999999987  66554433 2                  11222222222222


Q ss_pred             ecCcccEEEEEECCCCceEEEeecC
Q psy12456        130 NEHTAMVTGVRFGTHAHYLASSSMD  154 (162)
Q Consensus       130 ~~h~~~v~~~~~s~~~~~l~s~s~D  154 (162)
                      ... .....+.|+|+++++..++.+
T Consensus       173 ~v~-~~p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         173 IVD-GNLDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EES-SCCCCEEECSSSSEEEEEESC
T ss_pred             ecC-CCccceEECCCCCEEEEEecC
Confidence            222 246678999999998877655

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=5e-07  Score=60.80  Aligned_cols=152  Identities=17%  Similarity=0.098  Sum_probs=86.6

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCC---cEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCC-e--EEEEEcccC
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDS---QVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADEN-C--VKLWDLRKL   82 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~-~--v~~wd~~~~   82 (162)
                      ..+..-+|||||+.||......   .+.+.+...+... .+..+.+......|+|++..++...... .  +..+.....
T Consensus        39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~  117 (269)
T d2hqsa1          39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG  117 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeecccccc
Confidence            3455789999999998765543   3666776655543 3444566778889999998887765422 1  111111110


Q ss_pred             cce---------------------------------eEEe---------eCCCCCeeEEEECCCCCEEEEeccc---EEE
Q psy12456         83 KNF---------------------------------KTLQ---------LDPNYEIRDLCFDQSGTYMAVAGTD---VRV  117 (162)
Q Consensus        83 ~~~---------------------------------~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~---~~i  117 (162)
                      ...                                 ....         ...........|+|++..++..+.+   ..+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i  197 (269)
T d2hqsa1         118 QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHI  197 (269)
T ss_dssp             CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEE
T ss_pred             cceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceee
Confidence            000                                 0000         0001123456899999998887654   445


Q ss_pred             EEeCCceEEEEeecCcccEEEEEECCCCceEEEeecC---CeEEEee
Q psy12456        118 FLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMD---RTLKLYS  161 (162)
Q Consensus       118 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D---~~i~iw~  161 (162)
                      +.............+........|||||++|+-.+..   ..+.+++
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~  244 (269)
T d2hqsa1         198 AKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS  244 (269)
T ss_dssp             EEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             eEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            4443322222334455566778999999988744432   3455554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.86  E-value=1.7e-06  Score=59.03  Aligned_cols=151  Identities=11%  Similarity=0.153  Sum_probs=105.4

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc--CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcce
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ--LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNF   85 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~   85 (162)
                      ......+++.++|.++++....+.+.+++.. ++.+..+.  .+......+++.++++.+++....+.|.+||... +.+
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~  190 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYL  190 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEE
T ss_pred             ccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-cee
Confidence            3445778899999999888888889999864 56666553  3446678899999999888888889999999753 333


Q ss_pred             eEEeeC-CCCCeeEEEECCCCCEEEEecc-cEEEEEeC-CceEEEEeecC--cccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         86 KTLQLD-PNYEIRDLCFDQSGTYMAVAGT-DVRVFLCK-QWQELAMFNEH--TAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        86 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~i~~~~-~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ..+-.. .......+++.++|..+++-.. +.+|..+. .++.+..+...  ......+++.|+++++++ +.++.|++|
T Consensus       191 ~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~f  269 (279)
T d1q7fa_         191 RQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIY  269 (279)
T ss_dssp             EEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEE
T ss_pred             eeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEE
Confidence            333211 1234678999999987766433 33343333 34555555432  235788999999987665 578999999


Q ss_pred             e
Q psy12456        161 S  161 (162)
Q Consensus       161 ~  161 (162)
                      +
T Consensus       270 r  270 (279)
T d1q7fa_         270 R  270 (279)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.80  E-value=1.1e-06  Score=59.44  Aligned_cols=152  Identities=9%  Similarity=0.033  Sum_probs=100.4

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTL   88 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~   88 (162)
                      .....+++.++|+++++-..+..+..++..................+++++++++.+++...++.|..+|...... ..+
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-~~~  176 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-VVL  176 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-EEC
T ss_pred             eecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee-eee
Confidence            4568899999999998887778888888655432221111123446899999999888888888899998764322 222


Q ss_pred             eeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCceE-EEEe-ecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         89 QLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQE-LAMF-NEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        89 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      ..........+++.+++.+.++...+.+++.+..... ...+ ...-....++++.+++.++++-..++.|+..+
T Consensus       177 ~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         177 PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            2222234678999999988877766656555433221 1122 12234578899999999888877777777554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.72  E-value=9.7e-06  Score=56.33  Aligned_cols=154  Identities=12%  Similarity=0.187  Sum_probs=98.3

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCC----CeEEEEEcccCc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADE----NCVKLWDLRKLK   83 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----~~v~~wd~~~~~   83 (162)
                      +..+..++|.++|+++.+-..++.|.-||.++++....+.........++++++|+++++...+    +.+...+.....
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence            4455788999999998888889999999988776555554445567899999999988776432    234444443322


Q ss_pred             ceeEEe-eCCCCCeeEEEECCCCCEEEEeccc------EEEEEeCC-ceEEEEeecCcccEEEEEECCCCce-EEEeecC
Q psy12456         84 NFKTLQ-LDPNYEIRDLCFDQSGTYMAVAGTD------VRVFLCKQ-WQELAMFNEHTAMVTGVRFGTHAHY-LASSSMD  154 (162)
Q Consensus        84 ~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~------~~i~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~D  154 (162)
                      ...... .........+.+.++|.+.++....      ..++.+.. .+.+..+...-...+.++|+|+++. +++-+..
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~  198 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA  198 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccC
Confidence            222111 1122347789999999877664221      33544432 2233333333344678999999874 4666777


Q ss_pred             CeEEEee
Q psy12456        155 RTLKLYS  161 (162)
Q Consensus       155 ~~i~iw~  161 (162)
                      +.|..|+
T Consensus       199 ~~I~~~d  205 (319)
T d2dg1a1         199 NRLHRIA  205 (319)
T ss_dssp             TEEEEEE
T ss_pred             CceEEEE
Confidence            8887775

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.68  E-value=2.3e-06  Score=59.00  Aligned_cols=149  Identities=15%  Similarity=0.137  Sum_probs=95.7

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE-E
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT-L   88 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~-~   88 (162)
                      .+..+++.|||+++++...+++|..||.....  ..+......+.+++|+++|+++++...++.+..++......... .
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            47789999999999999999999999865432  22333446788999999999999888888888887754332222 1


Q ss_pred             -eeCCCCCeeEEEECCCCCEEEEecccEEEEEeC--CceE-EEEee---------cCcccEEEEEECCCCceEEEeecCC
Q psy12456         89 -QLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCK--QWQE-LAMFN---------EHTAMVTGVRFGTHAHYLASSSMDR  155 (162)
Q Consensus        89 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~-~~~~~---------~h~~~v~~~~~s~~~~~l~s~s~D~  155 (162)
                       ..........+++.+++.++++.+.+.++|.+.  .... +....         ........+.+.. +..+.+.+.++
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~  185 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM  185 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence             122234578899999999888877665665542  2211 11111         1122355666653 33445555666


Q ss_pred             eEEEee
Q psy12456        156 TLKLYS  161 (162)
Q Consensus       156 ~i~iw~  161 (162)
                      .|..++
T Consensus       186 ~i~~~~  191 (302)
T d2p4oa1         186 LLLRIP  191 (302)
T ss_dssp             EEEEEE
T ss_pred             eEEecc
Confidence            665554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.63  E-value=5.5e-06  Score=55.84  Aligned_cols=150  Identities=10%  Similarity=0.062  Sum_probs=98.0

Q ss_pred             cEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEe
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQ   89 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~   89 (162)
                      ....+++.++|+++++...++.+++++-.+...+..... .....+|+++++++++++-..+..+..++...... ....
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~  135 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLP  135 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECC
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeecccccccccccccccee-eeee
Confidence            346788999999998888877787776555544433332 24568999999999887766667677776543221 1111


Q ss_pred             eCCCCCeeEEEECCCCCEEEEecccEEEEEeCCc--eEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEee
Q psy12456         90 LDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQW--QELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLYS  161 (162)
Q Consensus        90 ~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw~  161 (162)
                      .........+++.+++.++++...+.++..+...  .........-.....+++.++++++++-...+.|..++
T Consensus       136 ~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         136 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             CCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             ecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEe
Confidence            1112335788999999887776666555554322  22222224445678899999999888877777776553

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.2e-06  Score=64.23  Aligned_cols=140  Identities=9%  Similarity=0.066  Sum_probs=85.9

Q ss_pred             EEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccC---CCCCEEEEEEccCCCEEEEEeC---------CCeEEEEEccc
Q psy12456         14 AQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQL---DAGPIQALSFSENGYYLATAAD---------ENCVKLWDLRK   81 (162)
Q Consensus        14 ~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~~---------d~~v~~wd~~~   81 (162)
                      ..|.+++.++. -..+|.+.+||+.+++....+..   ..-.+....||||+++++....         .+.+.+||+.+
T Consensus        22 ~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            35888888764 45578899999988765333332   2235667789999999887643         46788999976


Q ss_pred             CcceeEEeeC-CCCCeeEEEECCCCCEEEEeccc-EEEEEeCCceEEEEe-ecCcc-----------------cEEEEEE
Q psy12456         82 LKNFKTLQLD-PNYEIRDLCFDQSGTYMAVAGTD-VRVFLCKQWQELAMF-NEHTA-----------------MVTGVRF  141 (162)
Q Consensus        82 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~-~~h~~-----------------~v~~~~~  141 (162)
                      .+........ ....+....|||+|+.+|-...+ +-+........++.. .+-..                 .-.++.|
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W  180 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW  180 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence            5532221111 12235567899999998876543 332222222222221 11111                 1257889


Q ss_pred             CCCCceEEEeecC
Q psy12456        142 GTHAHYLASSSMD  154 (162)
Q Consensus       142 s~~~~~l~s~s~D  154 (162)
                      ||||++||....|
T Consensus       181 SPDgk~iaf~~~D  193 (465)
T d1xfda1         181 SPDGTRLAYAAIN  193 (465)
T ss_dssp             CTTSSEEEEEEEE
T ss_pred             CCCCCeEEEEEec
Confidence            9999999877643

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.40  E-value=4.6e-05  Score=52.76  Aligned_cols=151  Identities=11%  Similarity=0.072  Sum_probs=90.2

Q ss_pred             EEEEEeCCCCcEEEEeeC-------CCcEEEEECCCCeeeeeccCC----CCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456         11 LTTAQLHPDGLIFGIGTS-------DSQVQIWDLKKQKNVTDFQLD----AGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~-------dg~i~~wd~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      .-..+|.|+|+++++...       +|+|..||..+++........    .+.-..++|.++++.+++++....+...|.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            445789999998876443       467888998877543322211    123468999999998888887777888887


Q ss_pred             ccCcceeE-EeeC--CCCCeeEEEECCCCCEEEEecc---------------cEEEEEeCCceEEEEeecCcccEEEEEE
Q psy12456         80 RKLKNFKT-LQLD--PNYEIRDLCFDQSGTYMAVAGT---------------DVRVFLCKQWQELAMFNEHTAMVTGVRF  141 (162)
Q Consensus        80 ~~~~~~~~-~~~~--~~~~v~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~~~~h~~~v~~~~~  141 (162)
                      ........ ....  .....+++.+.++|.+.++-..               ..++|.+........+...-..-+.++|
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~  179 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAV  179 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeeeEE
Confidence            53221110 0000  0112577899999987766321               1356655432222222222333567888


Q ss_pred             CCCCc-----eEEEeecCCeEEEee
Q psy12456        142 GTHAH-----YLASSSMDRTLKLYS  161 (162)
Q Consensus       142 s~~~~-----~l~s~s~D~~i~iw~  161 (162)
                      +|++.     ++++-+..+.|..|+
T Consensus       180 ~~d~d~~~~~lyv~d~~~~~i~~~d  204 (314)
T d1pjxa_         180 RHMNDGRPYQLIVAETPTKKLWSYD  204 (314)
T ss_dssp             EECTTSCEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCcceeEEEEEeecccceEEee
Confidence            87753     556666677777665

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.38  E-value=4.3e-05  Score=52.89  Aligned_cols=149  Identities=5%  Similarity=0.034  Sum_probs=89.6

Q ss_pred             EEEEEeCCCCcEEEEeeC---------------CCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCC-----EEEEEeC
Q psy12456         11 LTTAQLHPDGLIFGIGTS---------------DSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGY-----YLATAAD   70 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~---------------dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~-----~l~s~~~   70 (162)
                      .+.+++.|+|+++++-..               +|.+..++.+ ++..... .....-..++|+|++.     ++++-+.
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceeeeeEECCCCCcceeEEEEEeec
Confidence            577899999998876432               2334444432 2222211 1222346789998764     4555567


Q ss_pred             CCeEEEEEcccCcceeE---E-e--eCCCCCeeEEEECCCCCEEEEeccc--EEEEEeCCceEEEEeecCcccEEEEEEC
Q psy12456         71 ENCVKLWDLRKLKNFKT---L-Q--LDPNYEIRDLCFDQSGTYMAVAGTD--VRVFLCKQWQELAMFNEHTAMVTGVRFG  142 (162)
Q Consensus        71 d~~v~~wd~~~~~~~~~---~-~--~~~~~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s  142 (162)
                      .+.|..||+.....+..   + .  .........+++..+|.+.++....  +.+++.+..+.+..+.......++++|.
T Consensus       197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg  276 (314)
T d1pjxa_         197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK  276 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC
T ss_pred             ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEe
Confidence            78898888754322221   1 1  1111235678999999876665433  4444433344445556666678999999


Q ss_pred             CCCc-eEEEeecCCeEEEee
Q psy12456        143 THAH-YLASSSMDRTLKLYS  161 (162)
Q Consensus       143 ~~~~-~l~s~s~D~~i~iw~  161 (162)
                      |+++ ++++.+.++.|.-.+
T Consensus       277 ~d~~~lyVt~~~~g~i~~~~  296 (314)
T d1pjxa_         277 PQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             TTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEE
Confidence            9886 567777888777655

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.28  E-value=2.8e-05  Score=53.35  Aligned_cols=152  Identities=10%  Similarity=0.062  Sum_probs=91.5

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCe--eeeecc-CCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcc
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQK--NVTDFQ-LDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKN   84 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~--~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~   84 (162)
                      ...+..+++.|+|++++++..++.+..++.....  ...... ........+++.++++++++.+.++.+..+|......
T Consensus        67 ~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~  146 (302)
T d2p4oa1          67 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  146 (302)
T ss_dssp             SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcc
Confidence            3467899999999999999999999888875432  111111 2345678999999999999888888888888764332


Q ss_pred             eeEEee---------CCCCCeeEEEECCCCCEEEEecccEEEEEe--CCceE---EEEeecCcccEEEEEECCCCceEEE
Q psy12456         85 FKTLQL---------DPNYEIRDLCFDQSGTYMAVAGTDVRVFLC--KQWQE---LAMFNEHTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus        85 ~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~---~~~~~~h~~~v~~~~~s~~~~~l~s  150 (162)
                      ......         ........+.+..+. +..+.....+++.+  .....   ...+. .......++|.++++++++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~-l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va  224 (302)
T d2p4oa1         147 SIWLEHPMLARSNSESVFPAANGLKRFGNF-LYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGA  224 (302)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEEEEETTE-EEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEE
T ss_pred             eeEecCCccceeeccCcccccccccccCCc-eeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEE
Confidence            111110         011123455554432 23333334444433  21111   11111 1223456899999998888


Q ss_pred             eecCCeEEEee
Q psy12456        151 SSMDRTLKLYS  161 (162)
Q Consensus       151 ~s~D~~i~iw~  161 (162)
                      ...++.|..++
T Consensus       225 ~~~~~~V~~i~  235 (302)
T d2p4oa1         225 THIYNSVVRIA  235 (302)
T ss_dssp             CBTTCCEEEEC
T ss_pred             EcCCCcEEEEC
Confidence            77788777764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.25  E-value=0.00025  Score=49.88  Aligned_cols=101  Identities=15%  Similarity=0.150  Sum_probs=63.1

Q ss_pred             CEEEEEEccCCCEEEEEeC-CCeEEEEEcccCcce---eEEe-eCCCCCeeEEEECCCCCEEEEeccc---EEEEEeCCc
Q psy12456         52 PIQALSFSENGYYLATAAD-ENCVKLWDLRKLKNF---KTLQ-LDPNYEIRDLCFDQSGTYMAVAGTD---VRVFLCKQW  123 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~~~-d~~v~~wd~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~---~~i~~~~~~  123 (162)
                      -+.+++|+|||+++++++. ...|.+|+.......   .... .......+.+.|+|+++++.+....   +.++.....
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4678999999998888864 457888876432211   1111 1223457889999999988665533   566665432


Q ss_pred             e--EE---EEee--------------cCcccEEEEEECCCCceEEEee
Q psy12456        124 Q--EL---AMFN--------------EHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus       124 ~--~~---~~~~--------------~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                      .  .+   ....              .+......+.++|+++++..+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            1  11   1111              1223456789999999886653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.25  E-value=0.00019  Score=48.48  Aligned_cols=149  Identities=15%  Similarity=0.201  Sum_probs=98.3

Q ss_pred             EEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCC------CCCEEEEEEccC-CCEEEEE-eCCCeEEEEEcccC
Q psy12456         11 LTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLD------AGPIQALSFSEN-GYYLATA-ADENCVKLWDLRKL   82 (162)
Q Consensus        11 v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~------~~~v~~i~~~~~-~~~l~s~-~~d~~v~~wd~~~~   82 (162)
                      ...+++.|+|+++++-..++.|++||.+ ++.+..+...      ...-..+++.++ +.+++.. +.++.|..++.. .
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g  102 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-G  102 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-S
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-c
Confidence            5789999999999888888999999965 6666655321      112345565554 3344433 345577777653 2


Q ss_pred             cceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCC-ceEEEEe--ecCcccEEEEEECCCCceEEEeecCCeEEE
Q psy12456         83 KNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQ-WQELAMF--NEHTAMVTGVRFGTHAHYLASSSMDRTLKL  159 (162)
Q Consensus        83 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i  159 (162)
                      +....+..........+++.+++.++++.....+++.... .+.+..+  ..+......+++.+++..+++....+.|++
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~  182 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV  182 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceee
Confidence            3333343333345678999999988777666555444432 3444444  345667888999999998888888888888


Q ss_pred             ee
Q psy12456        160 YS  161 (162)
Q Consensus       160 w~  161 (162)
                      |+
T Consensus       183 ~d  184 (279)
T d1q7fa_         183 FN  184 (279)
T ss_dssp             EE
T ss_pred             ee
Confidence            86

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=7.4e-05  Score=54.51  Aligned_cols=103  Identities=10%  Similarity=0.039  Sum_probs=67.5

Q ss_pred             cEEEEEeCCCCcEEEEee---------CCCcEEEEECCCCeeeee--ccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q psy12456         10 TLTTAQLHPDGLIFGIGT---------SDSQVQIWDLKKQKNVTD--FQLDAGPIQALSFSENGYYLATAADENCVKLWD   78 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~---------~dg~i~~wd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd   78 (162)
                      .+....++|||++++...         ..+.+.++|+.+++....  .......+....|||||+.++-... +.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEec-ceEEEEe
Confidence            455678999999887764         356788999988765332  2233445556789999999988764 5577777


Q ss_pred             cccCcceeEEeeCCC-----------------CCeeEEEECCCCCEEEEecc
Q psy12456         79 LRKLKNFKTLQLDPN-----------------YEIRDLCFDQSGTYMAVAGT  113 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~~~~~  113 (162)
                      .......+.......                 ..-..+.|||+|++||....
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~  192 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI  192 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence            654443332211111                 11246779999999998753

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.82  E-value=0.00022  Score=47.40  Aligned_cols=96  Identities=17%  Similarity=0.112  Sum_probs=62.1

Q ss_pred             EeCCC--CcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC----CC--eEEEEEcccCccee
Q psy12456         15 QLHPD--GLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD----EN--CVKLWDLRKLKNFK   86 (162)
Q Consensus        15 ~~~~~--g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~----d~--~v~~wd~~~~~~~~   86 (162)
                      ..+||  |+.+|-.+ +|.|.+.|+.+++.. .+..+.+.+...+|||||++|+....    +.  .|.+++....+..+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35788  99888765 467888899887764 45555567888999999999986542    22  35555554433221


Q ss_pred             EE-----eeCCCCCeeEEEECCCCCEEEEec
Q psy12456         87 TL-----QLDPNYEIRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        87 ~~-----~~~~~~~v~~~~~~~~~~~~~~~~  112 (162)
                      ..     ............|+|+++.++...
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEE
Confidence            10     011112346778999999988753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=0.0028  Score=41.65  Aligned_cols=131  Identities=8%  Similarity=0.039  Sum_probs=74.8

Q ss_pred             EEEEEeCCCCcEE-EEeeCCCc--EEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCC-eEEEEEcccCccee
Q psy12456         11 LTTAQLHPDGLIF-GIGTSDSQ--VQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADEN-CVKLWDLRKLKNFK   86 (162)
Q Consensus        11 v~~~~~~~~g~~~-a~g~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~-~v~~wd~~~~~~~~   86 (162)
                      .....+++++..+ .+...+|.  +.+.++..+.. ..............|+|++..++..+.++ ...+|.........
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~  207 (269)
T d2hqsa1         129 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  207 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeecccccc
Confidence            3445566766644 44444554  44555554433 23333455667789999999888876554 44444443222222


Q ss_pred             EEeeCCCCCeeEEEECCCCCEEEEeccc-----EEEEEeCCceEEEEeecCcccEEEEEECCC
Q psy12456         87 TLQLDPNYEIRDLCFDQSGTYMAVAGTD-----VRVFLCKQWQELAMFNEHTAMVTGVRFGTH  144 (162)
Q Consensus        87 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~  144 (162)
                      .... .........|+|+|++|+-.+..     +.++..... ....+......+...+|||-
T Consensus       208 ~~~~-~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~-~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         208 QVLS-STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EECC-CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-CEEECCCSSSEEEEEEECCC
T ss_pred             eEee-cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC-CEEEEeCCCCcEEeEEeCCC
Confidence            2222 23345677899999998865532     334444333 33445556677888899983

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.52  E-value=0.0055  Score=41.92  Aligned_cols=151  Identities=9%  Similarity=0.038  Sum_probs=85.6

Q ss_pred             CcEEEEEeCCCCcEEEEeeCC----CcEEEEECCCCeeeeeccC--CCCCEEEEEEccCCCEEEEEeCC------CeEEE
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSD----SQVQIWDLKKQKNVTDFQL--DAGPIQALSFSENGYYLATAADE------NCVKL   76 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~d----g~i~~wd~~~~~~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~d------~~v~~   76 (162)
                      .....++++|||+++++...+    +.+...+...+........  .......+++.++|++.++....      +.+..
T Consensus        82 ~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~  161 (319)
T d2dg1a1          82 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY  161 (319)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEE
T ss_pred             CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEE
Confidence            346789999999988775432    3455556555443332221  12357789999999877764321      22333


Q ss_pred             EEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc-c--EEEEEeCCc----eEE----EEeecCcccEEEEEECCCC
Q psy12456         77 WDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT-D--VRVFLCKQW----QEL----AMFNEHTAMVTGVRFGTHA  145 (162)
Q Consensus        77 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~i~~~~~~----~~~----~~~~~h~~~v~~~~~s~~~  145 (162)
                      ++... +.+..... .....+.++|+|+++.|..+.. .  +..+.++..    ...    ............+++.++|
T Consensus       162 ~~~dg-~~~~~~~~-~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G  239 (319)
T d2dg1a1         162 VSPDF-RTVTPIIQ-NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDD  239 (319)
T ss_dssp             ECTTS-CCEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTC
T ss_pred             Eeccc-ceeEEEee-ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCC
Confidence            33322 22222211 1123577999999986655543 3  444443321    111    1111112235678998999


Q ss_pred             ceEEEeecCCeEEEee
Q psy12456        146 HYLASSSMDRTLKLYS  161 (162)
Q Consensus       146 ~~l~s~s~D~~i~iw~  161 (162)
                      ++.++....+.|..++
T Consensus       240 ~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         240 NLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             CEEEEEETTTEEEEEC
T ss_pred             CEEEEEcCCCEEEEEC
Confidence            9888888888888875

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.19  E-value=0.014  Score=39.49  Aligned_cols=149  Identities=11%  Similarity=0.040  Sum_probs=89.3

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeecc--CC--CCCEEEEEEccCCCEEEEEeCC----CeEEEEEcc
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQ--LD--AGPIQALSFSENGYYLATAADE----NCVKLWDLR   80 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~--~~--~~~v~~i~~~~~~~~l~s~~~d----~~v~~wd~~   80 (162)
                      ..+.++++.++|.++++ +.+ .+.++|..+++...-..  ..  ...+..+.+.|+|++.++....    +.-.+|.+.
T Consensus        59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec
Confidence            45788889999987765 444 48899998886543222  11  1247788999999877665432    234566665


Q ss_pred             cCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-EEEEE--eCC--------ceEEEEeecCcccEEEEEECCCCceEE
Q psy12456         81 KLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-VRVFL--CKQ--------WQELAMFNEHTAMVTGVRFGTHAHYLA  149 (162)
Q Consensus        81 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~i~~--~~~--------~~~~~~~~~h~~~v~~~~~s~~~~~l~  149 (162)
                      ..+......  .......++|++++..+..+.+. .+|+.  ++.        ........+-.....++.+..+|++.+
T Consensus       137 ~g~~~~~~~--~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWv  214 (295)
T d2ghsa1         137 KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWN  214 (295)
T ss_dssp             TTEEEEEEE--EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEE
T ss_pred             CCcEEEEee--ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEe
Confidence            433222221  11235788999999876665443 44443  321        111122233444567788888888777


Q ss_pred             EeecCCeEEEee
Q psy12456        150 SSSMDRTLKLYS  161 (162)
Q Consensus       150 s~s~D~~i~iw~  161 (162)
                      +.-..+.|..||
T Consensus       215 a~~~~g~V~~~d  226 (295)
T d2ghsa1         215 ARWGEGAVDRYD  226 (295)
T ss_dssp             EEETTTEEEEEC
T ss_pred             eeeCCCceEEec
Confidence            655566676665

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.10  E-value=0.024  Score=40.58  Aligned_cols=143  Identities=13%  Similarity=0.176  Sum_probs=87.5

Q ss_pred             CCCcEEEEee-CCCcEEEEECCCCeeeeeccCC-CCCEEEEEEc--cCCCEEEEEeCCC------------------eEE
Q psy12456         18 PDGLIFGIGT-SDSQVQIWDLKKQKNVTDFQLD-AGPIQALSFS--ENGYYLATAADEN------------------CVK   75 (162)
Q Consensus        18 ~~g~~~a~g~-~dg~i~~wd~~~~~~~~~~~~~-~~~v~~i~~~--~~~~~l~s~~~d~------------------~v~   75 (162)
                      +||+++.+.. .+..|-+-|+++.+.....+.. ...+..+...  |...|++.++.+.                  .+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            4788776655 5788999999998875544332 2345666664  4566787776633                  356


Q ss_pred             EEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc-----------------EEEEEeCC---------ceE---E
Q psy12456         76 LWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD-----------------VRVFLCKQ---------WQE---L  126 (162)
Q Consensus        76 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------------~~i~~~~~---------~~~---~  126 (162)
                      +.|..+++.........  ....+.++++|+++.+.+.+                 +.++++..         .+.   +
T Consensus       177 ~ID~~tm~V~~QV~V~g--~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         177 AVDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEecCCceEEEEeeeCC--ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            78877665444433332  35678999999998887532                 22333211         011   1


Q ss_pred             EEeecC-------------cccEEEEEECCCCceEEE-eecCCeEEEeeC
Q psy12456        127 AMFNEH-------------TAMVTGVRFGTHAHYLAS-SSMDRTLKLYSL  162 (162)
Q Consensus       127 ~~~~~h-------------~~~v~~~~~s~~~~~l~s-~s~D~~i~iw~~  162 (162)
                      ..+..-             .....++..+|||++++. +..+.++.++|+
T Consensus       255 ~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~  304 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDV  304 (459)
T ss_dssp             EEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEG
T ss_pred             eeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEe
Confidence            111110             112456889999998854 556889998874

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.95  E-value=0.0081  Score=41.60  Aligned_cols=104  Identities=12%  Similarity=0.111  Sum_probs=65.4

Q ss_pred             cEEEEEeCCCCcEEEEeeCCC-----------cEEEEECCCCeeeee--c-cCCCCCEEEEEEccCCCEEEEEeCC-CeE
Q psy12456         10 TLTTAQLHPDGLIFGIGTSDS-----------QVQIWDLKKQKNVTD--F-QLDAGPIQALSFSENGYYLATAADE-NCV   74 (162)
Q Consensus        10 ~v~~~~~~~~g~~~a~g~~dg-----------~i~~wd~~~~~~~~~--~-~~~~~~v~~i~~~~~~~~l~s~~~d-~~v   74 (162)
                      .+..+....+|++++.|+.+.           .+.+||+.+++-...  . ..+.....+.++.+++.+++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            344566677999999988531           267899998754321  1 1232233456788999999988765 579


Q ss_pred             EEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc
Q psy12456         75 KLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT  113 (162)
Q Consensus        75 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  113 (162)
                      .+||..+.+-...-.......-...+..+++++++.++.
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCC
T ss_pred             eEecCccCcccccccccccccccceeeecCCceeeeccc
Confidence            999987543211111111111345677889999888874

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.92  E-value=0.026  Score=38.04  Aligned_cols=143  Identities=13%  Similarity=0.082  Sum_probs=90.0

Q ss_pred             EEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeC-
Q psy12456         14 AQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLD-   91 (162)
Q Consensus        14 ~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~-   91 (162)
                      ..|++ +++++-+--..++|.-||.++++.. .+.. ...+.++++.+++.++++ +.+ .+..+|..+.+........ 
T Consensus        23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~-~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~   98 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELES   98 (295)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSST
T ss_pred             CeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC-CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeec
Confidence            45675 6666666666789999999887543 3432 246788999999876664 454 4888998765532222211 


Q ss_pred             --CCCCeeEEEECCCCCEEEEecc------cEEEEEeCCceEEEEeecCcccEEEEEECCCCceE-EEeecCCeEEEee
Q psy12456         92 --PNYEIRDLCFDQSGTYMAVAGT------DVRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTLKLYS  161 (162)
Q Consensus        92 --~~~~v~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iw~  161 (162)
                        ....+.++.+.|+|.+.++...      ...++.....+...... .-..-+.+.|+++++.+ ++-+..+.|..|+
T Consensus        99 ~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          99 DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEee
Confidence              1234788899999987665432      24555554443333332 23346789999998754 5666677777665

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.75  E-value=0.028  Score=36.67  Aligned_cols=91  Identities=10%  Similarity=0.064  Sum_probs=55.7

Q ss_pred             EEccC--CCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEeccc------EEEEEe--CCceEE
Q psy12456         57 SFSEN--GYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD------VRVFLC--KQWQEL  126 (162)
Q Consensus        57 ~~~~~--~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~i~~~--~~~~~~  126 (162)
                      ..+||  |+.++-.+. +.|.+.|+...+.. .+.. ........+|||||+.|+-....      ..+|..  ...+..
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEec-CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            35688  888887654 45777888765533 2322 23356788999999999865321      234443  233222


Q ss_pred             EEee-------cCcccEEEEEECCCCceEEEe
Q psy12456        127 AMFN-------EHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus       127 ~~~~-------~h~~~v~~~~~s~~~~~l~s~  151 (162)
                       .+.       ..........|+|+++.++..
T Consensus        82 -~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          82 -RITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             -ECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             -EeeecCCCccCccccccccccCCCCCEEEEE
Confidence             221       122345678899999988754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.15  E-value=0.071  Score=37.75  Aligned_cols=100  Identities=14%  Similarity=0.169  Sum_probs=62.9

Q ss_pred             CcEEEEEeCCCCcEEEEeeC-CC----cEEEEECCCCeeeee-ccCCCCCEEEEEEccCCCEEEEEeCC-----------
Q psy12456          9 PTLTTAQLHPDGLIFGIGTS-DS----QVQIWDLKKQKNVTD-FQLDAGPIQALSFSENGYYLATAADE-----------   71 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~-dg----~i~~wd~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~d-----------   71 (162)
                      ..+....++|+++++|.+-+ +|    .++++|+.+++.+.. +..  .....++|.+|+..|.....+           
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~  202 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccccc
Confidence            34456788999999885443 33    599999999987642 221  112457899999988765432           


Q ss_pred             -----CeEEEEEcccCcceeEEeeCC---CCCeeEEEECCCCCEEEE
Q psy12456         72 -----NCVKLWDLRKLKNFKTLQLDP---NYEIRDLCFDQSGTYMAV  110 (162)
Q Consensus        72 -----~~v~~wd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~  110 (162)
                           ..+..+.+.+.........+.   ...+..+..++++++++.
T Consensus       203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence                 257777776544322222221   123556778899988764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.96  E-value=0.016  Score=43.02  Aligned_cols=81  Identities=19%  Similarity=0.264  Sum_probs=54.9

Q ss_pred             CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC-EE
Q psy12456         30 SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT-YM  108 (162)
Q Consensus        30 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~  108 (162)
                      |.+.-+|+.+++.+-.++.+. ++.+=..+..+.+++.|+.|+.++.+|.++.+.+=+++......-..+.|..+|+ |+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv  544 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            668888888888877665432 2222123346778888999999999999999987666654433234467777874 65


Q ss_pred             EEe
Q psy12456        109 AVA  111 (162)
Q Consensus       109 ~~~  111 (162)
                      ++.
T Consensus       545 ~i~  547 (582)
T d1flga_         545 GVT  547 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.82  E-value=0.15  Score=34.99  Aligned_cols=149  Identities=13%  Similarity=0.242  Sum_probs=86.1

Q ss_pred             EEEeCCCCcEEEEeeC------------CCcEEEEECCCCeee-eecc--CC-----CCCEEEEEE--ccCCC-EEEEEe
Q psy12456         13 TAQLHPDGLIFGIGTS------------DSQVQIWDLKKQKNV-TDFQ--LD-----AGPIQALSF--SENGY-YLATAA   69 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~------------dg~i~~wd~~~~~~~-~~~~--~~-----~~~v~~i~~--~~~~~-~l~s~~   69 (162)
                      .++..|+|..+.+++.            .|.+.++|+++.++. ..+.  ..     .-.-..+.+  .+++. +|+..+
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            4677899987766532            489999998765332 1121  11     011234444  34555 344443


Q ss_pred             ---CCCeEEEEEcccCcc----eeEEeeCCCCCeeEEEECCCCCEEEEecc-----------------cEEEEEeCCceE
Q psy12456         70 ---DENCVKLWDLRKLKN----FKTLQLDPNYEIRDLCFDQSGTYMAVAGT-----------------DVRVFLCKQWQE  125 (162)
Q Consensus        70 ---~d~~v~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~~~i~~~~~~~~  125 (162)
                         ...+|.+|++.....    +...........+++.+..++.+.++-..                 ...++.++..+.
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~  198 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV  198 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence               456788888753221    22232223345788888888888887321                 134555544332


Q ss_pred             EEEeecCcccEEEEEECCCCceE-EEeecCCeEEEeeC
Q psy12456        126 LAMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTLKLYSL  162 (162)
Q Consensus       126 ~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iw~~  162 (162)
                       ......-..-++++++|++++| ++-+..+.|+.|++
T Consensus       199 -~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~  235 (340)
T d1v04a_         199 -RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEK  235 (340)
T ss_dssp             -EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             -EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEe
Confidence             2222233458899999998755 56667788888763

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.75  E-value=0.069  Score=38.14  Aligned_cols=99  Identities=15%  Similarity=0.286  Sum_probs=60.9

Q ss_pred             EEEeCCCCcEEEE-eeCCCcEEEEECCCCe------------eeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q psy12456         13 TAQLHPDGLIFGI-GTSDSQVQIWDLKKQK------------NVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDL   79 (162)
Q Consensus        13 ~~~~~~~g~~~a~-g~~dg~i~~wd~~~~~------------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~   79 (162)
                      .+.++|||+++.+ |..+.++.|+|+++-.            .....+.-.+|. ..+|+..|+-..+---|.+|.-|++
T Consensus       279 GV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPL-ht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         279 GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL-HTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEE-EEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             ceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcc-ccccCCCceEEEEeeccceEEEEec
Confidence            3789999998754 5558999999997411            111122223444 5699998877777778999999998


Q ss_pred             ccC----------cceeEEeeCCCC----CeeEEEECCCCCEEEEec
Q psy12456         80 RKL----------KNFKTLQLDPNY----EIRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        80 ~~~----------~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~  112 (162)
                      .+.          .-+.++..+..-    ....-...|+|+|+++..
T Consensus       358 ~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         358 EDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             HHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             chhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            532          112333222110    001113478899998875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.65  E-value=0.027  Score=41.77  Aligned_cols=81  Identities=14%  Similarity=0.099  Sum_probs=50.8

Q ss_pred             CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC-EE
Q psy12456         30 SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT-YM  108 (162)
Q Consensus        30 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~  108 (162)
                      |.+.-+|+++++.+-...... +..+=.+...+.+++.|+.|+.++.+|.++.+.+=++.......-..+.|..+|+ |+
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi  522 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI  522 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence            467778888887765554221 1111011224667888999999999999998877666654333334466666774 66


Q ss_pred             EEe
Q psy12456        109 AVA  111 (162)
Q Consensus       109 ~~~  111 (162)
                      ++.
T Consensus       523 ~v~  525 (571)
T d2ad6a1         523 GSM  525 (571)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.30  E-value=0.052  Score=40.01  Aligned_cols=81  Identities=15%  Similarity=0.236  Sum_probs=52.7

Q ss_pred             CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC-EE
Q psy12456         30 SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT-YM  108 (162)
Q Consensus        30 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~  108 (162)
                      |.+.-||+.+++.+-.++... +..+=.+...+.+++.|+.|+.++.+|..+.+.+=+++......-..+.+..+|+ ||
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv  516 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYV  516 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            568889999998876665322 1111123335678889999999999999998877666554332223456666774 55


Q ss_pred             EEe
Q psy12456        109 AVA  111 (162)
Q Consensus       109 ~~~  111 (162)
                      ++.
T Consensus       517 ~v~  519 (560)
T d1kv9a2         517 AIM  519 (560)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.95  E-value=0.047  Score=40.36  Aligned_cols=81  Identities=12%  Similarity=0.170  Sum_probs=53.4

Q ss_pred             CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC-EE
Q psy12456         30 SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT-YM  108 (162)
Q Consensus        30 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~  108 (162)
                      |.+.-||+.+++.+-.++... +..+=..+..+.+++.|+.|+.++.+|.++.+.+=++.......-..+.|..+|+ ||
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv  535 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV  535 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence            468889999999887765432 1111122336778889999999999999999887666554322223356666665 55


Q ss_pred             EEe
Q psy12456        109 AVA  111 (162)
Q Consensus       109 ~~~  111 (162)
                      ++.
T Consensus       536 ~v~  538 (573)
T d1kb0a2         536 SVA  538 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.47  E-value=0.36  Score=31.68  Aligned_cols=151  Identities=9%  Similarity=0.053  Sum_probs=86.0

Q ss_pred             cEEEEEeCCCCcEE-EEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEE-EEEeCCCeEEEEEcccCcceeE
Q psy12456         10 TLTTAQLHPDGLIF-GIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYL-ATAADENCVKLWDLRKLKNFKT   87 (162)
Q Consensus        10 ~v~~~~~~~~g~~~-a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~d~~v~~wd~~~~~~~~~   87 (162)
                      .+.+++|++.++.+ -+-..++.|+..+++.+.....+......+.+++++.-+..| .+-...+.|.+.++...... .
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~-~  115 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-V  115 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-E
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE-E
Confidence            35678888765544 444556889988887665544444334567899998755544 45556778999998653322 2


Q ss_pred             EeeCCCCCeeEEEECCCCCEEEEec--c-cEEEEEe--CCceEEEEeecCcccEEEEEECCCCceE-EEeecCCeEEEee
Q psy12456         88 LQLDPNYEIRDLCFDQSGTYMAVAG--T-DVRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAHYL-ASSSMDRTLKLYS  161 (162)
Q Consensus        88 ~~~~~~~~v~~~~~~~~~~~~~~~~--~-~~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~D~~i~iw~  161 (162)
                      ........+..+++.|...++.-..  . ..+|+..  +...........-....++++.+.++.| .+-...+.|...+
T Consensus       116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~  195 (263)
T d1npea_         116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (263)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEE
Confidence            2222223578899988765554332  1 2345432  2222222223333456788887655433 4444556665544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.25  E-value=0.58  Score=33.24  Aligned_cols=53  Identities=9%  Similarity=0.082  Sum_probs=38.0

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCee--eeecc------CCCCCEEEEEEccC
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKN--VTDFQ------LDAGPIQALSFSEN   61 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~--~~~~~------~~~~~v~~i~~~~~   61 (162)
                      ....+++|.|||++|++--.+|+|++++..+++.  +..+.      .-++....|+++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3457899999999998765679999998777643  22221      11356789999985

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.21  E-value=0.55  Score=32.76  Aligned_cols=140  Identities=11%  Similarity=0.076  Sum_probs=79.8

Q ss_pred             CCcEEEEEeCCCCcEEEEeeCCCcEEEEECCC---------CeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q psy12456          8 GPTLTTAQLHPDGLIFGIGTSDSQVQIWDLKK---------QKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWD   78 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd   78 (162)
                      ....+-++++....++++|+.++ ++|..++.         .......+.....|..++|+.+  .|+.. .++.+..++
T Consensus        36 ~~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          36 FASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLD  111 (381)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred             ccccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence            34556678888766787777775 66765421         1100111111235889999755  45544 345678888


Q ss_pred             cccCcceeEEeeCCCCCeeEEEECCCCCEEEEecccEEEEEeCCceEEE------EeecCcccEEEEEECCCCceEEEee
Q psy12456         79 LRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGTDVRVFLCKQWQELA------MFNEHTAMVTGVRFGTHAHYLASSS  152 (162)
Q Consensus        79 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~h~~~v~~~~~s~~~~~l~s~s  152 (162)
                      ............ ...++..+.++|....++....+.-.+.....+...      .+. -+..+.++.|++.+..++++.
T Consensus       112 ~~~l~~~~~~~~-~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~-~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTS-FEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFD-VTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEE-CSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEE-ECSSEEEEEETTSCEEEEEEE
T ss_pred             eecccccccccc-ccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEE-ecCCceEEEEeCCcEEEEEeC
Confidence            765444333222 234578888888765555444455555554432211      111 235688899998888877764


Q ss_pred             c
Q psy12456        153 M  153 (162)
Q Consensus       153 ~  153 (162)
                      .
T Consensus       190 g  190 (381)
T d1xipa_         190 N  190 (381)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.03  E-value=0.065  Score=39.86  Aligned_cols=81  Identities=10%  Similarity=0.080  Sum_probs=52.2

Q ss_pred             CcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCC-EE
Q psy12456         30 SQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGT-YM  108 (162)
Q Consensus        30 g~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~  108 (162)
                      |.+.-||+.+++.+-...... +..+=.++..+.+++.|+.|+.++.+|.++.+.+=++.......-..+.|..+|+ |+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv  531 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             ceEEEEeCCCCceecccCCCC-CCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence            568888888888765543221 1111122335778888999999999999998877666554333334456666764 56


Q ss_pred             EEe
Q psy12456        109 AVA  111 (162)
Q Consensus       109 ~~~  111 (162)
                      ++.
T Consensus       532 av~  534 (596)
T d1w6sa_         532 AIY  534 (596)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.26  E-value=1.2  Score=31.00  Aligned_cols=136  Identities=14%  Similarity=0.063  Sum_probs=77.8

Q ss_pred             CcEEEEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccCcceeE-
Q psy12456          9 PTLTTAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKLKNFKT-   87 (162)
Q Consensus         9 ~~v~~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~~~~~~-   87 (162)
                      +.|..++|+.+  .+++.. ++.+..++...-........-..++..+.++|.  .++....++.+.++++.+.+.... 
T Consensus        87 p~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_          87 PDVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             TTEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEeeCC--EEEEEe-CCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc
Confidence            35788999755  344443 456787877653333333223457888888775  466677788899999976543221 


Q ss_pred             -----EeeCCCCCeeEEEECCCCCEEEEecccE-EEEE-eCCceEEEEeecCcccEEEEEECCCCceEEEe
Q psy12456         88 -----LQLDPNYEIRDLCFDQSGTYMAVAGTDV-RVFL-CKQWQELAMFNEHTAMVTGVRFGTHAHYLASS  151 (162)
Q Consensus        88 -----~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~i~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  151 (162)
                           +..  .....+++|++.++.++++..+. .+.. ......+.........|.++.|-.+..+++.-
T Consensus       162 ~~v~~~~~--~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         162 QNVTSFDV--TNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             ESEEEEEE--CSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCcceEEe--cCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence                 122  23477888888888777765442 2211 11100011111233457888887666666654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.55  E-value=1.9  Score=30.05  Aligned_cols=96  Identities=13%  Similarity=0.228  Sum_probs=56.9

Q ss_pred             EEEEEEccCCCEEEEEe-CC----CeEEEEEcccCcceeEEeeCCCCCeeEEEECCCCCEEEEecc--------------
Q psy12456         53 IQALSFSENGYYLATAA-DE----NCVKLWDLRKLKNFKTLQLDPNYEIRDLCFDQSGTYMAVAGT--------------  113 (162)
Q Consensus        53 v~~i~~~~~~~~l~s~~-~d----~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------  113 (162)
                      +...+++|++++++.+- ..    ..+++.|+.+.+.+.......  ....++|.++++.|.-...              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~--~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV--KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE--CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccc--cccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            45678899999888552 22    378999998876544221111  1256789999987754321              


Q ss_pred             --cEEEEEeCCc----eEEEEeec--CcccEEEEEECCCCceEEE
Q psy12456        114 --DVRVFLCKQW----QELAMFNE--HTAMVTGVRFGTHAHYLAS  150 (162)
Q Consensus       114 --~~~i~~~~~~----~~~~~~~~--h~~~v~~~~~s~~~~~l~s  150 (162)
                        ..+++..+.+    +.+..+..  ....+..+..++++++++.
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence              1244432211    12223333  3345777888999998753

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.14  E-value=2.2  Score=27.63  Aligned_cols=149  Identities=9%  Similarity=-0.033  Sum_probs=77.7

Q ss_pred             CcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEe-CCCeEEEEE--cccCcc
Q psy12456          9 PTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAA-DENCVKLWD--LRKLKN   84 (162)
Q Consensus         9 ~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~d~~v~~wd--~~~~~~   84 (162)
                      ..+..+++.+ .++++.+-...+.|.+.+++.......+.........++++|...++.-.. .....+++.  +.... 
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-  157 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-  157 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-
Confidence            4577888876 455555666678999999876543333333335678999999766555443 223334544  33222 


Q ss_pred             eeEEeeCCCCCeeEEEECCCCCEEEEecc-c--EEEEEeCCceEEEEeecCcccEEEEEECCCCceEEEeecCCeEEEe
Q psy12456         85 FKTLQLDPNYEIRDLCFDQSGTYMAVAGT-D--VRVFLCKQWQELAMFNEHTAMVTGVRFGTHAHYLASSSMDRTLKLY  160 (162)
Q Consensus        85 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~i~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iw  160 (162)
                      ...+..........+++.+.+..|..+.. .  +...+.........+.+-.. ..++++. .+....+-...+.|...
T Consensus       158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~~~~I~~~  234 (263)
T d1npea_         158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVIAM  234 (263)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE-CCEEEEEECCCCEEEEE
Confidence            12222222234678899877665544432 2  33333332222222333222 3456654 34444544444555443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.51  E-value=2.9  Score=28.21  Aligned_cols=62  Identities=11%  Similarity=0.051  Sum_probs=44.8

Q ss_pred             EEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeE
Q psy12456         13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCV   74 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v   74 (162)
                      ++.+++.=.++..-+.-|.+.+||+.++.++..-+....+|..-+-+.+..=++..+.+|.|
T Consensus       260 amqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         260 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred             EEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeE
Confidence            46677766677778888999999999999987766666777755555554445555666654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.39  E-value=3.9  Score=29.61  Aligned_cols=24  Identities=8%  Similarity=0.115  Sum_probs=20.3

Q ss_pred             EEEEeeCCCcEEEEECCCCeeeee
Q psy12456         22 IFGIGTSDSQVQIWDLKKQKNVTD   45 (162)
Q Consensus        22 ~~a~g~~dg~i~~wd~~~~~~~~~   45 (162)
                      .++.+..+|.+.++|..+++++..
T Consensus       316 ~v~~~~k~G~~~~lDr~tG~~i~~  339 (560)
T d1kv9a2         316 VLMQAPKNGFFYVLDRTNGKLISA  339 (560)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEE
T ss_pred             eeeecCccceEEEEecCCCccccc
Confidence            677889999999999999987643

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.65  E-value=3.3  Score=27.94  Aligned_cols=124  Identities=12%  Similarity=0.285  Sum_probs=79.0

Q ss_pred             EEEeCCCCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcccC-cceeEEeeC
Q psy12456         13 TAQLHPDGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAADENCVKLWDLRKL-KNFKTLQLD   91 (162)
Q Consensus        13 ~~~~~~~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d~~v~~wd~~~~-~~~~~~~~~   91 (162)
                      ++-.||..+++|.=. ..++++||+++.+.+..+...+ +|.-=.|-.+ +.|+.... ..|.=|++... +....+..+
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~-~~L~lVT~-taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSS-SEEEEECS-SEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCC-CEEEEEcC-CceEEEcccCCCCchhhhhhc
Confidence            456799999998877 5789999999999998888665 4444455433 45555554 35888998432 334444433


Q ss_pred             CC---CCeeEEEECCCCCEEEEecc---c------EEEEEeCCceEEEEeecCcccEEEEEE
Q psy12456         92 PN---YEIRDLCFDQSGTYMAVAGT---D------VRVFLCKQWQELAMFNEHTAMVTGVRF  141 (162)
Q Consensus        92 ~~---~~v~~~~~~~~~~~~~~~~~---~------~~i~~~~~~~~~~~~~~h~~~v~~~~~  141 (162)
                      ..   ..|-....+++.++++..+-   +      +.+|.... ..-+.+++|...-..+..
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~  203 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKM  203 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECC
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEc
Confidence            22   34666778899999887652   1      34554433 233456777765555544

>d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Glycosyl hydrolase domain
superfamily: Glycosyl hydrolase domain
family: Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
domain: Glucosylceramidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.14  E-value=1.9  Score=25.51  Aligned_cols=53  Identities=19%  Similarity=0.080  Sum_probs=27.4

Q ss_pred             cCCCCCcEEEEEe-CCCCcEEEEeeCC----CcEEEEECCCCeeeeeccCCCCCEEEEEE
Q psy12456          4 SGAGGPTLTTAQL-HPDGLIFGIGTSD----SQVQIWDLKKQKNVTDFQLDAGPIQALSF   58 (162)
Q Consensus         4 ~~~~~~~v~~~~~-~~~g~~~a~g~~d----g~i~~wd~~~~~~~~~~~~~~~~v~~i~~   58 (162)
                      .+.....+..++| +|||.++++...+    -.+.|++...+..-..+++|  .|..+-|
T Consensus        83 ~~s~~~~L~~vAF~nPDgs~vlVv~N~s~~~~~~~i~~~~~~~~~~~lpa~--Si~T~vw  140 (143)
T d2nt0a1          83 VASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGY--SIHTYLW  140 (143)
T ss_dssp             EESSCCSEEEEEEECTTSCEEEEEEECSSSCEEEEEEETTTEEEEEEECTT--EEEEEEE
T ss_pred             eecCcCcceEEEEECCCCCEEEEEEeCCCCCeEEEEEeCCCCEEEEEeCCC--EEEEEEE
Confidence            3445566777777 7888876544332    22445554333333333333  4544444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.61  E-value=0.87  Score=33.40  Aligned_cols=48  Identities=27%  Similarity=0.493  Sum_probs=34.5

Q ss_pred             CCcEEEEeeCCCcEEEEECCCCeeeeeccCCC----CCEEEEEEccCCC-EEEEEe
Q psy12456         19 DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDA----GPIQALSFSENGY-YLATAA   69 (162)
Q Consensus        19 ~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~----~~v~~i~~~~~~~-~l~s~~   69 (162)
                      .|.++.+|+.||.++-+|.++|+.+-+++...    .|   |.+..+|+ |++...
T Consensus       496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G~qYv~i~a  548 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQDGEQYLGVTV  548 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEEE
T ss_pred             cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEEe
Confidence            45566679999999999999999998887532    34   35556774 454443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=85.00  E-value=3.9  Score=27.32  Aligned_cols=109  Identities=13%  Similarity=0.126  Sum_probs=61.3

Q ss_pred             CEEEEEEccCCCEEEEEeCCC-----------eEEEEEcccCc--ceeEEeeCCCCCeeEEEECCCCCEEEEeccc---E
Q psy12456         52 PIQALSFSENGYYLATAADEN-----------CVKLWDLRKLK--NFKTLQLDPNYEIRDLCFDQSGTYMAVAGTD---V  115 (162)
Q Consensus        52 ~v~~i~~~~~~~~l~s~~~d~-----------~v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~  115 (162)
                      ++...+...+++.++.|+.+.           .+.+||..+.+  ....+...+.......++.+++++++.|+.+   .
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            333444455777777776421           36789987543  2222222222223456788999999988644   6


Q ss_pred             EEEEeCC--ceEEEEeecCcccEEEEEECCCCceEEEeecC------CeEEEee
Q psy12456        116 RVFLCKQ--WQELAMFNEHTAMVTGVRFGTHAHYLASSSMD------RTLKLYS  161 (162)
Q Consensus       116 ~i~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D------~~i~iw~  161 (162)
                      .+|+...  |.....+... ..-.++...+++++++.++.+      ..+.+||
T Consensus       101 ~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             eEecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeec
Confidence            7777543  3333322221 222345667789988888753      2466665

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.98  E-value=3.8  Score=26.43  Aligned_cols=153  Identities=10%  Similarity=0.009  Sum_probs=78.9

Q ss_pred             CCcEEEEEeCCCCcEEEEe-eCCCcEEEEECCCCe----eeeeccCCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEccc
Q psy12456          8 GPTLTTAQLHPDGLIFGIG-TSDSQVQIWDLKKQK----NVTDFQLDAGPIQALSFSENGY-YLATAADENCVKLWDLRK   81 (162)
Q Consensus         8 ~~~v~~~~~~~~g~~~a~g-~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d~~v~~wd~~~   81 (162)
                      ...+.+++|++.++.+.-. ..++.|+--+++...    ....+......+.++|+.+.+. ...+-...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            3456788998866655444 445667766664321    1111222234466789887544 444445667899999875


Q ss_pred             CcceeEEeeCCCCCeeEEEECCCCCEEEEec--ccEEEEEe--CCceEEEEeecCcccEEEEEECCCCc-eEEEeecCCe
Q psy12456         82 LKNFKTLQLDPNYEIRDLCFDQSGTYMAVAG--TDVRVFLC--KQWQELAMFNEHTAMVTGVRFGTHAH-YLASSSMDRT  156 (162)
Q Consensus        82 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~i~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~  156 (162)
                      ........ ........+++.|...++.-..  ...+|+..  ............-....++++.+.++ ...+-+..+.
T Consensus       109 ~~~~~~~~-~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~  187 (266)
T d1ijqa1         109 VKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  187 (266)
T ss_dssp             SSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ceEEEEEc-CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCE
Confidence            44322222 2233478889988544443332  22344432  21222222233335567788876544 3344444555


Q ss_pred             EEEee
Q psy12456        157 LKLYS  161 (162)
Q Consensus       157 i~iw~  161 (162)
                      |...+
T Consensus       188 I~~~~  192 (266)
T d1ijqa1         188 ISSID  192 (266)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.60  E-value=5.3  Score=25.71  Aligned_cols=103  Identities=12%  Similarity=-0.010  Sum_probs=59.8

Q ss_pred             CcEEEEEeCC-CCcEEEEeeCCCcEEEEECCCCeeeeeccCCCCCEEEEEEccCCCEEEEEeC--CCeEEEEEcccCcce
Q psy12456          9 PTLTTAQLHP-DGLIFGIGTSDSQVQIWDLKKQKNVTDFQLDAGPIQALSFSENGYYLATAAD--ENCVKLWDLRKLKNF   85 (162)
Q Consensus         9 ~~v~~~~~~~-~g~~~a~g~~dg~i~~wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~--d~~v~~wd~~~~~~~   85 (162)
                      ..+..+++.+ .++++.+-...++|.+.+++.......+.........++++|...+|.-...  .+.|.-.++.... .
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-~  155 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-I  155 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-E
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-e
Confidence            3455677876 4445555556788999999876554445444556789999986555544432  3345444443222 2


Q ss_pred             eEEeeCCCCCeeEEEECCCCCEEEEec
Q psy12456         86 KTLQLDPNYEIRDLCFDQSGTYMAVAG  112 (162)
Q Consensus        86 ~~~~~~~~~~v~~~~~~~~~~~~~~~~  112 (162)
                      ..+..........+++.+.+..|..+.
T Consensus       156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d  182 (266)
T d1ijqa1         156 YSLVTENIQWPNGITLDLLSGRLYWVD  182 (266)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             ecccccccceeeEEEeeccccEEEEec
Confidence            222222223467888888766555543