Psyllid ID: psy12482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
LLARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLEFSSPIKS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEEEEEEEEEccccEEEEEEEEccccccccccccccccEEEEEEEccccccccccccccccccccccccEEEEEEcHHHHcccEEEEEEEEcccccccccEEEEEEEcccccccccccEEEcccccccHHHHccccccEEEEEEEEccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEccccccccccccccccccccccccEEEEcccccccccccEEEEEEEEccccccccEEEEEEEEcccccccccccHHHccccHHHHHHHHHHHccccEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEccccccEccEEEEEEcccHHHHcccEEEEEEEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccccEEEEEEEcccccHHccccccccEEEEEEEEccccccEEccccccEccccccccEEEEEEccHHHHHccEEEEEEEEccccccccEEEEEEEEcccccccccccccEccccccccccccccccccEEEEEEEccccccccccccccccccccEEEEEEEEccccccccccccccEEEEEEccccccccccccEEEEccccccccEEEEEccccHHHHHHcEEEEEEEcccHcccccEEEEEEEEcccccccccEccccccccHHHHHHHHHHHcccccEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
llarskagkrktrvkkhtlspVFDEVLKTAgerdfsvssqqdkqaspddlsahseaglnksvssiltdddvterlphhnksllgarsdsmasvysgagegrygsVIVKGEVEFGLQYNYKQGALEIHVKQckdlapvdtkrqrsdpyvkvyllpdkskagkrktrvkkhtlspvFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEnkvfddpspkcyplqeRSEILDELICSKgeliiglkfvppedsslssakksssaaKGSLHVLIKEAkslcpvksntvDAFCKayllpdkgraskhktgiikrstspqwnhtvVYRDVSLEELSERCLELTVwdhdrltsneFLGGIrlnlghgkhySKLVDWMDSSGKEILLWQQMmerpnfwvesciplrsslefsspiks
Flexible Loop (DISEMBL)
llarskagkrktrvkkhtlspvfdevLKTAGERDFsvssqqdkqaspDDLSAHSEAGLNKSVSSILTDDDVTERLPHhnksllgarsdsMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDlapvdtkrqrsdpyvkvyllpdkskagkrktrvkkhtlspvfdeVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAyllpdkgraskhktgiikrstspqwnhtvVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPlrsslefsspiks
Low Complexity Region (SEG)
LLARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDsslssakksssaakgslHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVsleelserclelTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLEFSSPIKS
Disordered region (IsUnstruct)
*********************************************************************************************YSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDT*****DPYVKVYLLP*************KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFV********************LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGR****KTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLR***********
Disordered Region (DISOPRED)
LLARS*AGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSA******************************************************VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK**KRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE**********SKGELIIGLKFVPPE**************KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLP***********IIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSS*********
Disordered Region (DISEMBL)
***************KHTLSPVFDEVLKTAGER**********************AGLNKSVSSILTDDDVTERLPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK*********KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP*****************SLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL********
Disordered Region (DISPRO)
*****KAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERL*************SM*SV*******RYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDS*******SSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLEFSS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LLARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLEFSSPIKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	419	2.2.26 [Sep-21-2011]
Q80T23	753	Synaptotagmin-like protei	yes	N/A	0.766	0.426	0.467	1e-82
Q812E4	753	Synaptotagmin-like protei	yes	N/A	0.766	0.426	0.452	2e-80
Q96C24	671	Synaptotagmin-like protei	yes	N/A	0.766	0.478	0.452	4e-80
Q8VHQ7	672	Synaptotagmin-like protei	no	N/A	0.766	0.477	0.458	2e-79
Q8TDW5	730	Synaptotagmin-like protei	no	N/A	0.766	0.439	0.458	3e-79
Q9R0Q1	673	Synaptotagmin-like protei	no	N/A	0.766	0.476	0.455	3e-79
Q99N50	950	Synaptotagmin-like protei	no	N/A	0.742	0.327	0.446	5e-70
A6QP06	943	Synaptotagmin-like protei	no	N/A	0.720	0.320	0.432	4e-68
Q9HCH5	934	Synaptotagmin-like protei	no	N/A	0.720	0.323	0.429	4e-68
Q8IYJ3	562	Synaptotagmin-like protei	no	N/A	0.715	0.533	0.416	4e-65

>sp|Q80T23|SYTL5_MOUSE Synaptotagmin-like protein 5 OS=Mus musculus GN=Sytl5 PE=1 SV=1

 Score =  307 bits (786), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 159/340 (46%), Positives = 223/340 (65%), Gaps = 19/340 (5%)

Query: 88  DSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPY 147
           +SM SVYS  G+  YG+V V GE+   + Y YK G L I VK C++LA  D K+QR+D Y
Sbjct: 412 NSMMSVYSETGD--YGNVKVTGEILLHISYCYKTGGLYIFVKSCRNLATGDEKKQRTDAY 469

Query: 148 VKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND 207
           VK YLLPDKS+  KRKT+++  T +P F+E LK+ ++   LE RTL LSVWH D FGRN 
Sbjct: 470 VKSYLLPDKSRNNKRKTKIRTGT-NPEFNETLKYTISHTQLETRTLQLSVWHYDRFGRNS 528

Query: 208 FLGEVMMSLENKVFDDPSPKCYPLQERSEILDEL-ICSKGELIIGLKFVPPEDSSLSSA- 265
           FLGEV ++ ++  F++P  + + LQ + E+  ++ +  KGEL I L+++PPE++ +  A 
Sbjct: 529 FLGEVEIAFDSWNFENPCDEWFVLQPKVELAPDISLQYKGELTIVLRYIPPEENLIFPAG 588

Query: 266 -------------KKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASK 311
                        K+SSS + G L V IK+AK+L  VKS  T D+F K YLLPD  +A+K
Sbjct: 589 QRQEKKIFKRGKKKESSSISGGILEVFIKKAKNLTAVKSGGTSDSFVKGYLLPDDNKATK 648

Query: 312 HKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK 371
           HKT ++K+S +P+WNHT ++  +  +++   CLELT+WD +  +SN FLGG+RLN G G 
Sbjct: 649 HKTAVVKKSVNPEWNHTFIFSGLYPQDIKNACLELTIWDKEAFSSNVFLGGVRLNSGSGM 708

Query: 372 HYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
            Y K VDWMDS G+E  LWQ+M + P   VE  + LRSS+
Sbjct: 709 SYGKTVDWMDSHGEEQRLWQKMADNPGTSVEGVLMLRSSM 748

May act as Rab effector protein and play a role in vesicle trafficking. Binds phospholipids.
Mus musculus (taxid: 10090)

>sp|Q812E4|SYTL5_RAT Synaptotagmin-like protein 5 OS=Rattus norvegicus GN=Sytl5 PE=2 SV=1

 Score =  300 bits (767), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/340 (45%), Positives = 220/340 (64%), Gaps = 19/340 (5%)

Query: 88  DSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPY 147
           +SM SVYS  G+  YG+V V GE+   + Y YK G L I VK C++LA  D K+QR+D Y
Sbjct: 412 NSMMSVYSETGD--YGNVKVTGEILLHISYCYKTGGLYIFVKNCRNLAIGDEKKQRTDAY 469

Query: 148 VKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND 207
           VK YLLPDK++  KRKT+++  T +P F+E LK+ ++   LE RTL LSVWH D FGRN 
Sbjct: 470 VKSYLLPDKTRNNKRKTKIRTGT-NPEFNETLKYTISHTQLETRTLQLSVWHYDRFGRNS 528

Query: 208 FLGEVMMSLENKVFDDPSPKCYPLQERSEILDEL-ICSKGELIIGLKFVPPEDSSL---- 262
           FLGEV ++ ++  F++P  + + LQ + E+  ++ +  KGEL I L+++PPE++ +    
Sbjct: 529 FLGEVEIAFDSWNFENPCDEWFVLQPKVELAPDISLQYKGELTIVLRYIPPEENLIFPVE 588

Query: 263 ----------SSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASK 311
                        K+S + + G L V IKEAK+L  VK+  T D+F K YLLPD  +A+K
Sbjct: 589 QPQGKKIFKKGKKKESPAISGGILEVFIKEAKNLTAVKAGGTSDSFVKGYLLPDDNKATK 648

Query: 312 HKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK 371
           HKT ++K+S +PQWNH  ++  +  +++   CLELT+WD +  +SN FLGG+RLN G G 
Sbjct: 649 HKTAVVKKSVNPQWNHVFIFSGLYPQDIQNACLELTIWDKEAFSSNIFLGGVRLNSGSGI 708

Query: 372 HYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
            + K VDWMDS G+E  LWQ+M + P   VE  + LRSS+
Sbjct: 709 SHGKAVDWMDSRGEEQRLWQKMADNPGTSVEGVLMLRSSM 748

May act as Rab effector protein and play a role in vesicle trafficking. Binds phospholipids.

Rattus norvegicus (taxid: 10116)

>sp|Q96C24|SYTL4_HUMAN Synaptotagmin-like protein 4 OS=Homo sapiens GN=SYTL4 PE=1 SV=2

 Score =  298 bits (764), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 148/327 (45%), Positives = 212/327 (64%), Gaps = 6/327 (1%)

Query: 89  SMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYV 148
           SM S+YS AG+  +G++ V G + F L+Y  +  +L +HVK+C  LA  D  ++RS+PYV
Sbjct: 340 SMMSIYSEAGD--FGNIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYV 397

Query: 149 KVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDF 208
           K YLLPDKS+ GKRKT +K+ T++P++DE L++++    L  RTL  SVWH   FGRN F
Sbjct: 398 KTYLLPDKSRQGKRKTSIKRDTINPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTF 457

Query: 209 LGEVMMSLENKVFDDPSPKCYPLQER--SEILDELICSKGELIIGLKFVPPEDSSLSSAK 266
           LGE  + +++   D     C PL  +  +E    L   KGEL++ LK++P   + +   +
Sbjct: 458 LGEAEIQMDSWKLDKKLDHCLPLHGKISAESPTGLPSHKGELVVSLKYIPASKTPVGGDR 517

Query: 267 KSSSAAKGS-LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324
           K S   +G  L V IKEAK+L   K+  T D+F K YLLP + +ASK KT ++K++ +P 
Sbjct: 518 KKSKGGEGGELQVWIKEAKNLTAAKAGGTSDSFVKGYLLPMRNKASKRKTPVMKKTLNPH 577

Query: 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSG 384
           +NHT VY  V LE+L   CLELTVWD + L SN+FLGG+RL +G G    ++VDWMDS+G
Sbjct: 578 YNHTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLGGVRLGVGTGISNGEVVDWMDSTG 637

Query: 385 KEILLWQQMMERPNFWVESCIPLRSSL 411
           +E+ LWQ+M + P  W E  + LRSS+
Sbjct: 638 EEVSLWQKMRQYPGSWAEGTLQLRSSM 664

Modulates exocytosis of dense-core granules and secretion of hormones in the pancreas and the pituitary. Interacts with vesicles containing negatively charged phospholipids in a Ca(2+)-independent manner.

Homo sapiens (taxid: 9606)

>sp|Q8VHQ7|SYTL4_RAT Synaptotagmin-like protein 4 OS=Rattus norvegicus GN=Sytl4 PE=1 SV=1

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 150/327 (45%), Positives = 211/327 (64%), Gaps = 6/327 (1%)

Query: 89  SMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYV 148
           SM S+YS AG+  +G+V V G++ F L++  K   L IHVK+C  LA  D  ++RS+PYV
Sbjct: 341 SMMSLYSEAGD--FGNVSVTGKIAFSLKFEQKTQTLVIHVKECHQLAYADEAKKRSNPYV 398

Query: 149 KVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDF 208
           K YLLPDKS+ GKRKT +K+ T++P++DE  +++++   L  RTL  SVWH   FGRN F
Sbjct: 399 KTYLLPDKSRQGKRKTSIKRDTINPLYDETFRYEISESLLAQRTLQFSVWHHGRFGRNTF 458

Query: 209 LGEVMMSLENKVFDDPSPKCYPLQER--SEILDELICSKGELIIGLKFVPPEDSSLSSAK 266
           LGE  + +++   D     C PL  +  +E    L   KGEL++ LK++P     +   +
Sbjct: 459 LGEAEVHMDSWKLDKKLDHCLPLHGKISTESSPGLPAHKGELVVSLKYIPASKLPVGGDR 518

Query: 267 KSSSAAKGS-LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324
           K S   +G  L V IKEAK+L   KS  T D+F K YLLP + +ASK KT ++K++ +P 
Sbjct: 519 KKSKGGEGGELQVWIKEAKNLTAAKSGGTSDSFVKGYLLPMRNKASKRKTPVMKKTLNPH 578

Query: 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSG 384
           +NHT VY  V LE+L   CLELTVWD + L SN+FLGG+RL +G G    ++VDWMDS+G
Sbjct: 579 YNHTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLGGVRLGVGTGISSGEVVDWMDSTG 638

Query: 385 KEILLWQQMMERPNFWVESCIPLRSSL 411
           +E+ LWQ+M + P  W E  + LRSS+
Sbjct: 639 EEVSLWQKMRQYPGSWAEGTLQLRSSM 665

Modulates exocytosis of dense-core granules and secretion of hormones in the pancreas and the pituitary. Interacts with vesicles containing negatively charged phospholipids in a Ca(2+)-independent manner.

Rattus norvegicus (taxid: 10116)

>sp|Q8TDW5|SYTL5_HUMAN Synaptotagmin-like protein 5 OS=Homo sapiens GN=SYTL5 PE=1 SV=1

 Score =  296 bits (757), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 156/340 (45%), Positives = 217/340 (63%), Gaps = 19/340 (5%)

Query: 88  DSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPY 147
           +SM SVYS  G+  YG+V V GE+   + Y YK G L I VK C++LA  D K+QR+D Y
Sbjct: 389 NSMMSVYSETGD--YGNVKVSGEILLHISYCYKTGGLYIFVKNCRNLAIGDEKKQRTDAY 446

Query: 148 VKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND 207
           VK YLLPDKS+  KRKT+++  T +P F+E LK+ ++   LE RTL LSVWH D FGRN 
Sbjct: 447 VKSYLLPDKSRNNKRKTKIRTGT-NPEFNETLKYTISHTQLETRTLQLSVWHYDRFGRNS 505

Query: 208 FLGEVMMSLENKVFDDPSPKCYPLQERSEILDEL-ICSKGELIIGLKFVPPEDSSL---- 262
           FLGEV +  ++  F++P+ + + LQ + E   ++ +  KGEL + L+++PPE++ +    
Sbjct: 506 FLGEVEIPFDSWNFENPTDEWFVLQPKVEFAPDIGLQYKGELTVVLRYIPPEENLMLPPE 565

Query: 263 ----------SSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASK 311
                        K+S   + G L V IKEAK+L  VKS  T D+F K YLLPD  +A+K
Sbjct: 566 QLQGNKTFKKGKKKESPVISGGILEVFIKEAKNLTAVKSGGTSDSFVKGYLLPDDSKATK 625

Query: 312 HKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK 371
           HKT +IK+S +PQWNHT ++  +  +++   CLELT+WD +  +SN FLGG+RLN G G 
Sbjct: 626 HKTLVIKKSVNPQWNHTFMFSGIHPQDIKNVCLELTIWDKEAFSSNIFLGGVRLNSGSGV 685

Query: 372 HYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
            + K VDWMDS G+E  LWQ+M   P    E  + LRSS+
Sbjct: 686 SHGKNVDWMDSQGEEQRLWQKMANNPGTPFEGVLMLRSSM 725

May act as Rab effector protein and play a role in vesicle trafficking. Binds phospholipids.

Homo sapiens (taxid: 9606)

>sp|Q9R0Q1|SYTL4_MOUSE Synaptotagmin-like protein 4 OS=Mus musculus GN=Sytl4 PE=1 SV=1

 Score =  295 bits (756), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 149/327 (45%), Positives = 211/327 (64%), Gaps = 6/327 (1%)

Query: 89  SMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYV 148
           S+ S+YS AG+  +G++ V G++ F L++  K   L IHVK+C  LA  D  ++RS+PYV
Sbjct: 342 SIMSIYSEAGD--FGNISVTGKIAFSLKFEQKTQTLVIHVKECHQLAYADEAKKRSNPYV 399

Query: 149 KVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDF 208
           K YLLPDKS+ GKRKT +K+ T++P++DE  +++++   L  RTL  SVWH   FGRN F
Sbjct: 400 KTYLLPDKSRQGKRKTSIKRDTINPLYDETFRYEISESLLAQRTLQFSVWHHGRFGRNTF 459

Query: 209 LGEVMMSLENKVFDDPSPKCYPLQER--SEILDELICSKGELIIGLKFVPPEDSSLSSAK 266
           LGE  + +++   D     C PL  +  +E    L   KGEL++ LK++P     +   +
Sbjct: 460 LGEAEVHMDSWKLDKKLDHCLPLHGKISTESSPGLPAHKGELVVSLKYIPASKLPVGGDR 519

Query: 267 KSSSAAKGS-LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324
           K S   +G  L V IKEAK+L   KS  T D+F K YLLP + +ASK KT ++K++ SP 
Sbjct: 520 KKSKGGEGGELQVWIKEAKNLTAAKSGGTSDSFVKGYLLPMRNKASKRKTPVMKKTLSPH 579

Query: 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSG 384
           +NHT VY  V LE+L   CLELTVWD + L SN+FLGG+RL +G G    ++VDWMDS+G
Sbjct: 580 YNHTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLGGVRLGVGTGISNGEVVDWMDSTG 639

Query: 385 KEILLWQQMMERPNFWVESCIPLRSSL 411
           +E+ LWQ+M + P  W E  + LRSS+
Sbjct: 640 EEVSLWQKMRQYPGSWAEGTLQLRSSM 666

Modulates exocytosis of dense-core granules and secretion of hormones in the pancreas and the pituitary. Interacts with vesicles containing negatively charged phospholipids in a Ca(2+)-independent manner.

Mus musculus (taxid: 10090)

>sp|Q99N50|SYTL2_MOUSE Synaptotagmin-like protein 2 OS=Mus musculus GN=Sytl2 PE=1 SV=2

 Score =  265 bits (677), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 145/325 (44%), Positives = 209/325 (64%), Gaps = 14/325 (4%)

Query: 87  SDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDP 146
           S S+ SVYSG     +G++ VKG V+F L Y      L + V QCKDLA  D K+QRSDP
Sbjct: 628 SGSVMSVYSGD----FGNLEVKGSVQFALDYVESLKELHVFVAQCKDLAAADVKKQRSDP 683

Query: 147 YVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRN 206
           YVK YLLPDK K GK+KT V K TL+PV++E+L++++  + L+ + L LSVWH D F RN
Sbjct: 684 YVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIERQFLKTQKLNLSVWHRDTFKRN 743

Query: 207 DFLGEVMMSLENKVFD---DPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLS 263
            FLGEV + LE   +D   +   K YPL+ ++  +     ++GE+ + L++VP      S
Sbjct: 744 SFLGEVELDLETWDWDSKQNKQLKWYPLKRKTAPVALETENRGEMKLALQYVP----EPS 799

Query: 264 SAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323
             KK  +   G +H+ +KE   L  ++ + +++F K  +LPD  R S+ KT  + ++T+P
Sbjct: 800 PGKKLPTT--GEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNP 857

Query: 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSS 383
            +NHT+VY     E+L E C+ELTVWDH +LT N+FLGG+R+  G GK Y   VDWMDS+
Sbjct: 858 VFNHTMVYDGFRPEDLMEACVELTVWDHYKLT-NQFLGGLRIGFGTGKSYGTEVDWMDST 916

Query: 384 GKEILLWQQMMERPNFWVESCIPLR 408
            +E+ LW++M+  PN WVE+ +PLR
Sbjct: 917 SEEVALWEKMVNSPNTWVEATLPLR 941

Isoform 11 acts as a RAB27A effector protein and plays a role in cytotoxic granule exocytosis in lymphocytes. Required for cytotoxic granule docking at the immunologic synapse. Isoform 1 may play a role in melanosome transport and vesicle trafficking. It controls melanosome distribution in the cell periphery and regulates melanocyte morphology. Isoform 1 acts as a positive mediator of mucus secretion by the surface mucus cells of the stomach. Mediates basal mucus secretion by gastric surface cells by promoting the proper granule biognesis and docking of mucus granules with the apical plasma membrane.

Mus musculus (taxid: 10090)

>sp|A6QP06|SYTL2_BOVIN Synaptotagmin-like protein 2 OS=Bos taurus GN=SYTL2 PE=2 SV=1

 Score =  259 bits (661), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 135/312 (43%), Positives = 203/312 (65%), Gaps = 10/312 (3%)

Query: 100 GRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKA 159
           G +G++ VKG ++F + Y      L + V QCKDLA  D K+QRSDPYVK YLLPDK K 
Sbjct: 630 GDFGNLEVKGSIQFAIDYVDSLKELHVFVAQCKDLAAADIKKQRSDPYVKTYLLPDKGKM 689

Query: 160 GKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK 219
           GK+KT V K TL+PV++E+L++++  + L+ + L LSVWH D F RN FLGEV + LE  
Sbjct: 690 GKKKTLVVKKTLNPVYNEILRYKINKQILKTQKLNLSVWHRDTFKRNSFLGEVELDLETW 749

Query: 220 VFDDPSPKC---YPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSL 276
            +D+   K    YPL+ ++  +     ++GE+ + L++VP         KK  +   G +
Sbjct: 750 DWDNKQNKQLKWYPLKRKTAPVPLEAENRGEMKLALQYVP----EPVPGKKLPTT--GEV 803

Query: 277 HVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSL 336
           H+ +KE   L  ++ + +++F K  +LPD  R S+ KT  + ++T+P +NHT+VY     
Sbjct: 804 HIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPVFNHTMVYDGFRP 863

Query: 337 EELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMER 396
           E+L+E C+ELTVWDH +LT N+FLGG+R+  G GK Y   VDWMDS+ +E+ LW++M++ 
Sbjct: 864 EDLTEACVELTVWDHYKLT-NQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVKS 922

Query: 397 PNFWVESCIPLR 408
           PN W+E+ +PLR
Sbjct: 923 PNTWIEAILPLR 934

May act as a RAB27A effector protein and play a role in cytotoxic granule exocytosis in lymphocytes.

Bos taurus (taxid: 9913)

>sp|Q9HCH5|SYTL2_HUMAN Synaptotagmin-like protein 2 OS=Homo sapiens GN=SYTL2 PE=1 SV=3

 Score =  258 bits (660), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 134/312 (42%), Positives = 202/312 (64%), Gaps = 10/312 (3%)

Query: 100 GRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKA 159
           G +G++ VKG ++F ++Y      L + V QCKDLA  D K+QRSDPYVK YLLPDK K 
Sbjct: 621 GDFGNLEVKGNIQFAIEYVESLKELHVFVAQCKDLAAADVKKQRSDPYVKAYLLPDKGKM 680

Query: 160 GKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK 219
           GK+KT V K TL+PV++E+L++++  + L+ + L LS+WH D F RN FLGEV + LE  
Sbjct: 681 GKKKTLVVKKTLNPVYNEILRYKIEKQILKTQKLNLSIWHRDTFKRNSFLGEVELDLETW 740

Query: 220 VFDDPSPKC---YPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSL 276
            +D+   K    YPL+ ++  +     ++GE+ + L++VP         KK  +   G +
Sbjct: 741 DWDNKQNKQLRWYPLKRKTAPVALEAENRGEMKLALQYVP----EPVPGKKLPTT--GEV 794

Query: 277 HVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSL 336
           H+ +KE   L  ++ + +++F K  +LPD  R S+ KT  + ++T+P +NHT+VY     
Sbjct: 795 HIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQKTRAVGKTTNPIFNHTMVYDGFRP 854

Query: 337 EELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMER 396
           E+L E C+ELTVWDH +LT N+FLGG+R+  G GK Y   VDWMDS+ +E+ LW++M+  
Sbjct: 855 EDLMEACVELTVWDHYKLT-NQFLGGLRIGFGTGKSYGTEVDWMDSTSEEVALWEKMVNS 913

Query: 397 PNFWVESCIPLR 408
           PN W+E+ +PLR
Sbjct: 914 PNTWIEATLPLR 925

Isoform 1 acts as a RAB27A effector protein and plays a role in cytotoxic granule exocytosis in lymphocytes. It is required for cytotoxic granule docking at the immunologic synapse. Isoform 4 binds phosphatidylserine (PS) and phosphatidylinositol-4,5-bisphosphate (PIP2) and promotes the recruitment of glucagon-containing granules to the cell membrane in pancreatic alpha cells. Binding to PS is inhibited by Ca(2+) while binding to PIP2 is Ca(2+) insensitive.

Homo sapiens (taxid: 9606)

>sp|Q8IYJ3|SYTL1_HUMAN Synaptotagmin-like protein 1 OS=Homo sapiens GN=SYTL1 PE=1 SV=1

 Score =  248 bits (634), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 130/312 (41%), Positives = 190/312 (60%), Gaps = 12/312 (3%)

Query: 100 GRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKA 159
           G   +V V+G V F L Y      L +HV QC+ LA    +R+RSDPYVK YLLPDK   
Sbjct: 259 GDAEAVQVRGSVHFALHYEPGAAELRVHVIQCQGLA--AARRRRSDPYVKSYLLPDKQS- 315

Query: 160 GKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK 219
            KRKT VKK  L+PVF+E L++ +   +L+ R L LSVWH +  GRN FLGEV + L+  
Sbjct: 316 -KRKTAVKKRNLNPVFNETLRYSVPQAELQGRVLSLSVWHRESLGRNIFLGEVEVPLDTW 374

Query: 220 VFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVL 279
            +    P   PLQ R     + + S+G L + LK+VP      + ++ +     G LH  
Sbjct: 375 DWGS-EPTWLPLQPRVPPSPDDLPSRGLLALSLKYVP------AGSEGAGLPPSGELHFW 427

Query: 280 IKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEEL 339
           +KEA+ L P+++ ++D + + ++LPD  +AS+ +T +++RS SP +NHT+VY      +L
Sbjct: 428 VKEARDLLPLRAGSLDTYVQCFVLPDDSQASRQRTRVVRRSLSPVFNHTMVYDGFGPADL 487

Query: 340 SERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNF 399
            + C EL++WDH  L +N  LGG RL+LG G  Y   V WMDS+ +E  LWQ ++E+P  
Sbjct: 488 RQACAELSLWDHGAL-ANRQLGGTRLSLGTGSSYGLQVPWMDSTPEEKQLWQALLEQPCE 546

Query: 400 WVESCIPLRSSL 411
           WV+  +PLR++L
Sbjct: 547 WVDGLLPLRTNL 558

May play a role in vesicle trafficking (By similarity). Binds phosphatidylinositol 3,4,5-trisphosphate. Acts as a RAB27A effector protein and may play a role in cytotoxic granule exocytosis in lymphocytes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
91077372	2116	PREDICTED: similar to bitesize CG33555-P	0.949	0.188	0.618	1e-145
270002107	535	hypothetical protein TcasGA2_TC001061 [T	0.887	0.695	0.641	1e-143
345486469	3024	PREDICTED: hypothetical protein LOC10012	0.785	0.108	0.686	1e-139
157135382	476	bitesize isoform [Aedes aegypti] gi|1088	0.825	0.726	0.621	1e-137
347965178	3164	AGAP005288-PA [Anopheles gambiae str. PE	0.823	0.109	0.610	1e-136
350407091	3384	PREDICTED: hypothetical protein LOC10075	0.914	0.113	0.593	1e-136
340724624	3385	PREDICTED: hypothetical protein LOC10064	0.914	0.113	0.593	1e-136
347965176	1496	AGAP005288-PB [Anopheles gambiae str. PE	0.825	0.231	0.607	1e-136
347965180	693	AGAP005288-PC [Anopheles gambiae str. PE	0.825	0.499	0.607	1e-134
332019650	3336	Synaptotagmin-like protein 5 [Acromyrmex	0.914	0.114	0.606	1e-134

>gi|91077372|ref|XP_975183.1| PREDICTED: similar to bitesize CG33555-PC [Tribolium castaneum]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 256/414 (61%), Positives = 311/414 (75%), Gaps = 16/414 (3%)

Query: 9    KRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSS---- 64
            +R  R ++H + P  D  +  A       S    K A+P  ++  S  G   SVSS    
Sbjct: 1705 RRGRRSQQHNV-PSDDVSISEAHSSPMLTSRNGSKSATPSPVAPGSRRGTG-SVSSQDWS 1762

Query: 65   -ILTDDDVTERLPHHNK----SLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNY 119
             +  DDD+   +  H      S LG RSDSMASVYSGAGEGRYG+V V+G+VEFGLQYNY
Sbjct: 1763 NVNADDDIDRLVVIHQTRSSLSSLGMRSDSMASVYSGAGEGRYGTVTVRGQVEFGLQYNY 1822

Query: 120  KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVL 179
            K  ALEI +KQCKDLAPVD KR RSDPYVKVYLLPDKSK+GKRKT+VKKHTL+PVFDE L
Sbjct: 1823 KARALEILIKQCKDLAPVDVKRNRSDPYVKVYLLPDKSKSGKRKTKVKKHTLNPVFDETL 1882

Query: 180  KFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILD 239
            KF ++L  LE RTLWL+VWHSDMFGRNDFLGEVMM+LENKVFDDP+PK Y LQER+E  D
Sbjct: 1883 KFHISLNGLETRTLWLTVWHSDMFGRNDFLGEVMMTLENKVFDDPTPKWYNLQERTEPFD 1942

Query: 240  ELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFC 298
            +++  KG++I+ LKFVPP+ +     K+S    +G+LHVL+KEAK L  VK+N T D FC
Sbjct: 1943 DMLSFKGDIIVCLKFVPPDMTVHKKGKRS----RGTLHVLVKEAKCLTAVKANGTSDPFC 1998

Query: 299  KAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNE 358
            K+YLLPDKGR+SK KT + KR+ +P WNHT VY DV+L+EL+ERCLELTVWDHDRL SNE
Sbjct: 1999 KSYLLPDKGRSSKQKTPVAKRTVNPVWNHTFVYDDVTLQELAERCLELTVWDHDRLASNE 2058

Query: 359  FLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLE 412
            FLGG+R +LG GKHY K VDWMD++GKE+ LW+ M+ERPNFWVE C+ LR +L+
Sbjct: 2059 FLGGVRFSLGTGKHYGKSVDWMDATGKELSLWKSMLERPNFWVEGCLALRPTLD 2112

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002107|gb|EEZ98554.1| hypothetical protein TcasGA2_TC001061 [Tribolium castaneum]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 247/385 (64%), Positives = 300/385 (77%), Gaps = 13/385 (3%)

Query: 37  VSSQQDKQASPDDLSAHSEAGL----NKSVSSILTDDDVTERLPHHNK----SLLGARSD 88
            S    K A+P  ++  S  G     ++  S++  DDD+   +  H      S LG RSD
Sbjct: 151 TSRNGSKSATPSPVAPGSRRGTGSVSSQDWSNVNADDDIDRLVVIHQTRSSLSSLGMRSD 210

Query: 89  SMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYV 148
           SMASVYSGAGEGRYG+V V+G+VEFGLQYNYK  ALEI +KQCKDLAPVD KR RSDPYV
Sbjct: 211 SMASVYSGAGEGRYGTVTVRGQVEFGLQYNYKARALEILIKQCKDLAPVDVKRNRSDPYV 270

Query: 149 KVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDF 208
           KVYLLPDKSK+GKRKT+VKKHTL+PVFDE LKF ++L  LE RTLWL+VWHSDMFGRNDF
Sbjct: 271 KVYLLPDKSKSGKRKTKVKKHTLNPVFDETLKFHISLNGLETRTLWLTVWHSDMFGRNDF 330

Query: 209 LGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKS 268
           LGEVMM+LENKVFDDP+PK Y LQER+E  D+++  KG++I+ LKFVPP+ +     K+S
Sbjct: 331 LGEVMMTLENKVFDDPTPKWYNLQERTEPFDDMLSFKGDIIVCLKFVPPDMTVHKKGKRS 390

Query: 269 SSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNH 327
               +G+LHVL+KEAK L  VK+N T D FCK+YLLPDKGR+SK KT + KR+ +P WNH
Sbjct: 391 ----RGTLHVLVKEAKCLTAVKANGTSDPFCKSYLLPDKGRSSKQKTPVAKRTVNPVWNH 446

Query: 328 TVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEI 387
           T VY DV+L+EL+ERCLELTVWDHDRL SNEFLGG+R +LG GKHY K VDWMD++GKE+
Sbjct: 447 TFVYDDVTLQELAERCLELTVWDHDRLASNEFLGGVRFSLGTGKHYGKSVDWMDATGKEL 506

Query: 388 LLWQQMMERPNFWVESCIPLRSSLE 412
            LW+ M+ERPNFWVE C+ LR +L+
Sbjct: 507 SLWKSMLERPNFWVEGCLALRPTLD 531

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486469|ref|XP_001607636.2| PREDICTED: hypothetical protein LOC100123872 [Nasonia vitripennis]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/344 (68%), Positives = 278/344 (80%), Gaps = 15/344 (4%)

Query: 81   SLLGARSDSMASVYSGAGEGRY-GSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDT 139
            S LGARSDSMASVYSGAGEGR+ GSV V+GEVEF LQY+YKQ   E+HV QC+DLAPVD 
Sbjct: 2674 SSLGARSDSMASVYSGAGEGRWCGSVAVRGEVEFSLQYDYKQLTFEVHVTQCRDLAPVDV 2733

Query: 140  KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWH 199
            KR RSDPYVKVYLLPDKSK+GKRKT+VKKHTL+PVFDE LKF  +L  LE RTLWL+VWH
Sbjct: 2734 KRNRSDPYVKVYLLPDKSKSGKRKTKVKKHTLNPVFDETLKFHTSLNSLESRTLWLTVWH 2793

Query: 200  SDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPE- 258
            SDMFGRNDFLGEV M LENK+FDDP P+ YPLQER+E  D+ I  KGE+I+GLKFVPP+ 
Sbjct: 2794 SDMFGRNDFLGEVRMPLENKIFDDPRPQWYPLQERTEPFDDPIAYKGEVIVGLKFVPPDP 2853

Query: 259  --------DSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGR 308
                    DS+ +  KKS S  +G+LHVL+KEA++L     N  T D FCK+YLLPDKGR
Sbjct: 2854 ARQDRDRGDSATNKLKKSWS--RGALHVLVKEARNLQTRAKNSGTCDPFCKSYLLPDKGR 2911

Query: 309  ASKHKTGIIKRST-SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
            +SK KT +++RST SP WNHT VY+DVSL+EL++R LELTVWDHDR+ SNEFLGG+R NL
Sbjct: 2912 SSKQKTAVVRRSTGSPVWNHTFVYKDVSLQELADRGLELTVWDHDRIASNEFLGGVRFNL 2971

Query: 368  GHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
            G GKHY K VDWMD++G+E+ LWQ M+ERPNFWVE  + LR +L
Sbjct: 2972 GTGKHYGKAVDWMDATGREMSLWQNMLERPNFWVEGAVTLRPNL 3015

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157135382|ref|XP_001656631.1| bitesize isoform [Aedes aegypti] gi|108881260|gb|EAT45485.1| AAEL003283-PA, partial [Aedes aegypti]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/375 (62%), Positives = 286/375 (76%), Gaps = 29/375 (7%)

Query: 67  TDDDVTERLP-HHNK---SLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQG 122
           +D+D+   +  H N+   S LG RSDSMASVYSGAGEGRYG+V V+G++EFG+QYNYKQG
Sbjct: 96  SDEDIDRLVALHQNRASLSSLGVRSDSMASVYSGAGEGRYGTVTVRGQIEFGMQYNYKQG 155

Query: 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ 182
           ALEIHVKQCKDLA VDTKR RSDPYVKVYLLPDKSK GKRKT+VKKHTL+PVFDEVL+F 
Sbjct: 156 ALEIHVKQCKDLAAVDTKRNRSDPYVKVYLLPDKSKGGKRKTKVKKHTLNPVFDEVLRFH 215

Query: 183 LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELI 242
           ++L  L+ RT+WL+VWHSDMFGRNDFLGEVMM L+ KVFD+P+P+ Y LQERSE  D+L 
Sbjct: 216 MSLSGLQTRTIWLTVWHSDMFGRNDFLGEVMMGLQGKVFDNPAPQWYQLQERSEPFDDLS 275

Query: 243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAA------------------------KGSLHV 278
             KG++I+GLK++PP+    +      + +                        +G+LHV
Sbjct: 276 AYKGDIIVGLKYIPPDSEGGTPQHHHQNGSGTLNLRKFSTRSITSTSSNSSGPGRGALHV 335

Query: 279 LIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLE 337
           L+KEAK+L P+K+N T DAFCK+YLLPDK R+SK KT ++KRS SP WN+T +Y DVSL 
Sbjct: 336 LVKEAKNLQPLKANGTCDAFCKSYLLPDKNRSSKQKTPVVKRSNSPVWNYTFIYEDVSLA 395

Query: 338 ELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERP 397
           ELSER LELT+WDHDRL SNEFLGG+R +L  GKH  + VDWMDS+GKE+ LWQ M+ RP
Sbjct: 396 ELSERALELTIWDHDRLASNEFLGGVRFSLATGKHNGRSVDWMDSTGKELSLWQNMINRP 455

Query: 398 NFWVESCIPLRSSLE 412
           NFWVE  + LR SL+
Sbjct: 456 NFWVEGALVLRPSLD 470

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965178|ref|XP_309076.5| AGAP005288-PA [Anopheles gambiae str. PEST] gi|333466451|gb|EAA04822.6| AGAP005288-PA [Anopheles gambiae str. PEST]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/388 (61%), Positives = 287/388 (73%), Gaps = 43/388 (11%)

Query: 67   TDDDVTERLP--HHNK---SLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQ 121
            +D+D+ +RL   H N+   S LG RSDSMASVYSGAGEGRYG+V V+G++EFG+QYNYKQ
Sbjct: 2772 SDEDI-DRLVALHQNRASLSSLGVRSDSMASVYSGAGEGRYGTVTVRGQIEFGMQYNYKQ 2830

Query: 122  GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
            GALEIHVKQCKDLA VDTKR RSDPYVKVYLLPDKSK+GKRKT+VKKHTL+PVFDEVL+F
Sbjct: 2831 GALEIHVKQCKDLAAVDTKRNRSDPYVKVYLLPDKSKSGKRKTKVKKHTLNPVFDEVLRF 2890

Query: 182  QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDEL 241
             ++L  L+ RT+W++VWHSDMFGRNDFLGEVMM L++KVFD+P P+ Y LQERSE  ++L
Sbjct: 2891 HMSLNSLQTRTIWITVWHSDMFGRNDFLGEVMMGLQDKVFDNPQPQWYQLQERSEPFEDL 2950

Query: 242  ICSKGELIIGLKFVPPEDSSLSSAKKSSSA------------------------------ 271
               KG++I+GLK+V  +          S                                
Sbjct: 2951 SAYKGDIIVGLKYVSADADGGGIMGAGSGVIGGSGGSTSSGFGTLNLRKFSTRSLTSNSS 3010

Query: 272  ------AKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324
                  +KG+LHVL+KEAK L P+KSN T DAFCK+YLLPDK R+SK KT +IKR+ SP 
Sbjct: 3011 STLSGHSKGALHVLVKEAKHLQPIKSNGTCDAFCKSYLLPDKNRSSKQKTPVIKRTNSPV 3070

Query: 325  WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSG 384
            WN+T VY DVSL ELSER LELT+WDHDRL SNEFLGG+R +LG+GKH  + V+WMDS+G
Sbjct: 3071 WNYTFVYEDVSLAELSERALELTIWDHDRLASNEFLGGVRFSLGNGKHNGRAVEWMDSTG 3130

Query: 385  KEILLWQQMMERPNFWVESCIPLRSSLE 412
            KE+ LWQ M+ RPNFWVE  + LR SLE
Sbjct: 3131 KELSLWQNMINRPNFWVEGALVLRPSLE 3158

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407091|ref|XP_003487982.1| PREDICTED: hypothetical protein LOC100750145 [Bombus impatiens]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/413 (59%), Positives = 302/413 (73%), Gaps = 30/413 (7%)

Query: 29   TAGERDFSVSSQQDKQA-SPDDLSAHSEA--------GLNKSVSSILTDDDVTERLPHHN 79
            +AG+RD S S +Q   + +PDD S+ SEA        G     S  + D D  +   H  
Sbjct: 2963 SAGKRDNSRSRRQQAMSLTPDDGSSLSEACSTPIIGAGSRSGSSHTVIDVDDMDSGLHSG 3022

Query: 80   K-------SLLGARSDSMASVYSGAGEGRY-GSVIVKGEVEFGLQYNYKQGALEIHVKQC 131
                    S LGARSDSMASVYSGAGEGR   SV+V GEVEF LQY+YK    E+HV +C
Sbjct: 3023 HLATRASLSSLGARSDSMASVYSGAGEGRCCRSVVVTGEVEFALQYDYKHLTFEVHVTKC 3082

Query: 132  KDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECR 191
            K+LAPVD KR+RSDPYVKVYLLPDKSK+GKRKT+VKKHTL+P F+E LKF ++L  LE R
Sbjct: 3083 KNLAPVDVKRKRSDPYVKVYLLPDKSKSGKRKTKVKKHTLNPEFNETLKFHMSLSGLETR 3142

Query: 192  TLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIG 251
            TLWL+VWHSDMFGRNDFLGEV M LENK+FDDP+PK YPLQER+E  D+ +  KGE+I+G
Sbjct: 3143 TLWLTVWHSDMFGRNDFLGEVRMPLENKIFDDPTPKWYPLQERTEPFDDPVAYKGEVIVG 3202

Query: 252  LKFVPPEDSSL----------SSAKKSSSAAKGSLHVLIKEAKSLCPVKSN--TVDAFCK 299
            LKFVPP+ + L          S++K   + ++G+LHVL+KEA++L     N  T D FCK
Sbjct: 3203 LKFVPPDPTQLERDREIGTDRSASKSKKNWSRGALHVLVKEARNLQTRAKNSGTCDPFCK 3262

Query: 300  AYLLPDKGRASKHKTGIIKRS-TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNE 358
            +YLLPDKGR+ K KTG+++RS  SP W HT +Y+DVSL+EL+ER LELTVWDHDR+ SNE
Sbjct: 3263 SYLLPDKGRSGKQKTGVVRRSGGSPVWGHTFIYKDVSLQELAERGLELTVWDHDRIASNE 3322

Query: 359  FLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
            FLGG+R NLG GKHY K VDWMD++G+E+ LWQ M+ERPNFWVE  + LR +L
Sbjct: 3323 FLGGVRFNLGTGKHYGKPVDWMDATGRELSLWQSMLERPNFWVEGAVTLRPNL 3375

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724624|ref|XP_003400681.1| PREDICTED: hypothetical protein LOC100644979 [Bombus terrestris]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/413 (59%), Positives = 302/413 (73%), Gaps = 30/413 (7%)

Query: 29   TAGERDFSVSSQQDKQA-SPDDLSAHSEA--------GLNKSVSSILTDDDVTERLPHHN 79
            +AG+RD S S +Q   + +PDD S+ SEA        G     S  + D D  +   H  
Sbjct: 2964 SAGKRDNSRSRRQQAMSLTPDDGSSLSEACSTPIIGAGSRAGSSHTVIDVDDMDSGLHSG 3023

Query: 80   K-------SLLGARSDSMASVYSGAGEGRY-GSVIVKGEVEFGLQYNYKQGALEIHVKQC 131
                    S LGARSDSMASVYSGAGEGR   SV+V GEVEF LQY+YK    E+HV +C
Sbjct: 3024 HLATRASLSSLGARSDSMASVYSGAGEGRCCRSVVVTGEVEFALQYDYKHLTFEVHVTKC 3083

Query: 132  KDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECR 191
            K+LAPVD KR+RSDPYVKVYLLPDKSK+GKRKT+VKKHTL+P F+E LKF ++L  LE R
Sbjct: 3084 KNLAPVDVKRKRSDPYVKVYLLPDKSKSGKRKTKVKKHTLNPEFNETLKFHMSLSGLETR 3143

Query: 192  TLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIG 251
            TLWL+VWHSDMFGRNDFLGEV M LENK+FDDP+PK YPLQER+E  D+ +  KGE+I+G
Sbjct: 3144 TLWLTVWHSDMFGRNDFLGEVRMPLENKIFDDPTPKWYPLQERTEPFDDPVAYKGEVIVG 3203

Query: 252  LKFVPPEDSSL----------SSAKKSSSAAKGSLHVLIKEAKSLCPVKSN--TVDAFCK 299
            LKFVPP+ + L          S++K   + ++G+LHVL+KEA++L     N  T D FCK
Sbjct: 3204 LKFVPPDPTQLERDREIGTDRSASKSKKNWSRGALHVLVKEARNLQTRAKNSGTCDPFCK 3263

Query: 300  AYLLPDKGRASKHKTGIIKRS-TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNE 358
            +YLLPDKGR+ K KTG+++RS  SP W HT +Y+DVSL+EL+ER LELTVWDHDR+ SNE
Sbjct: 3264 SYLLPDKGRSGKQKTGVVRRSGGSPVWGHTFIYKDVSLQELAERGLELTVWDHDRIASNE 3323

Query: 359  FLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
            FLGG+R NLG GKHY K VDWMD++G+E+ LWQ M+ERPNFWVE  + LR +L
Sbjct: 3324 FLGGVRFNLGTGKHYGKPVDWMDATGRELSLWQSMLERPNFWVEGAVTLRPNL 3376

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965176|ref|XP_001688162.2| AGAP005288-PB [Anopheles gambiae str. PEST] gi|333466452|gb|EDO64490.2| AGAP005288-PB [Anopheles gambiae str. PEST]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 235/387 (60%), Positives = 285/387 (73%), Gaps = 41/387 (10%)

Query: 67   TDDDVTERLP-HHNK---SLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQG 122
            +D+D+   +  H N+   S LG RSDSMASVYSGAGEGRYG+V V+G++EFG+QYNYKQG
Sbjct: 1104 SDEDIDRLVALHQNRASLSSLGVRSDSMASVYSGAGEGRYGTVTVRGQIEFGMQYNYKQG 1163

Query: 123  ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ 182
            ALEIHVKQCKDLA VDTKR RSDPYVKVYLLPDKSK+GKRKT+VKKHTL+PVFDEVL+F 
Sbjct: 1164 ALEIHVKQCKDLAAVDTKRNRSDPYVKVYLLPDKSKSGKRKTKVKKHTLNPVFDEVLRFH 1223

Query: 183  LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELI 242
            ++L  L+ RT+W++VWHSDMFGRNDFLGEVMM L++KVFD+P P+ Y LQERSE  ++L 
Sbjct: 1224 MSLNSLQTRTIWITVWHSDMFGRNDFLGEVMMGLQDKVFDNPQPQWYQLQERSEPFEDLS 1283

Query: 243  CSKGELIIGLKFVPPEDSSLSSAKKSSSA------------------------------- 271
              KG++I+GLK+V  +          S                                 
Sbjct: 1284 AYKGDIIVGLKYVSADADGGGIMGAGSGVIGGSGGSTSSGFGTLNLRKFSTRSLTSNSSS 1343

Query: 272  -----AKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW 325
                 +KG+LHVL+KEAK L P+KSN T DAFCK+YLLPDK R+SK KT +IKR+ SP W
Sbjct: 1344 TLSGHSKGALHVLVKEAKHLQPIKSNGTCDAFCKSYLLPDKNRSSKQKTPVIKRTNSPVW 1403

Query: 326  NHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGK 385
            N+T VY DVSL ELSER LELT+WDHDRL SNEFLGG+R +LG+GKH  + V+WMDS+GK
Sbjct: 1404 NYTFVYEDVSLAELSERALELTIWDHDRLASNEFLGGVRFSLGNGKHNGRAVEWMDSTGK 1463

Query: 386  EILLWQQMMERPNFWVESCIPLRSSLE 412
            E+ LWQ M+ RPNFWVE  + LR SLE
Sbjct: 1464 ELSLWQNMINRPNFWVEGALVLRPSLE 1490

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347965180|ref|XP_003435722.1| AGAP005288-PC [Anopheles gambiae str. PEST] gi|333466453|gb|EGK96247.1| AGAP005288-PC [Anopheles gambiae str. PEST]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/387 (60%), Positives = 285/387 (73%), Gaps = 41/387 (10%)

Query: 67  TDDDVTERLP-HHNK---SLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQG 122
           +D+D+   +  H N+   S LG RSDSMASVYSGAGEGRYG+V V+G++EFG+QYNYKQG
Sbjct: 301 SDEDIDRLVALHQNRASLSSLGVRSDSMASVYSGAGEGRYGTVTVRGQIEFGMQYNYKQG 360

Query: 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ 182
           ALEIHVKQCKDLA VDTKR RSDPYVKVYLLPDKSK+GKRKT+VKKHTL+PVFDEVL+F 
Sbjct: 361 ALEIHVKQCKDLAAVDTKRNRSDPYVKVYLLPDKSKSGKRKTKVKKHTLNPVFDEVLRFH 420

Query: 183 LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELI 242
           ++L  L+ RT+W++VWHSDMFGRNDFLGEVMM L++KVFD+P P+ Y LQERSE  ++L 
Sbjct: 421 MSLNSLQTRTIWITVWHSDMFGRNDFLGEVMMGLQDKVFDNPQPQWYQLQERSEPFEDLS 480

Query: 243 CSKGELIIGLKFVPPEDSSLSSAKKSSSA------------------------------- 271
             KG++I+GLK+V  +          S                                 
Sbjct: 481 AYKGDIIVGLKYVSADADGGGIMGAGSGVIGGSGGSTSSGFGTLNLRKFSTRSLTSNSSS 540

Query: 272 -----AKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW 325
                +KG+LHVL+KEAK L P+KSN T DAFCK+YLLPDK R+SK KT +IKR+ SP W
Sbjct: 541 TLSGHSKGALHVLVKEAKHLQPIKSNGTCDAFCKSYLLPDKNRSSKQKTPVIKRTNSPVW 600

Query: 326 NHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGK 385
           N+T VY DVSL ELSER LELT+WDHDRL SNEFLGG+R +LG+GKH  + V+WMDS+GK
Sbjct: 601 NYTFVYEDVSLAELSERALELTIWDHDRLASNEFLGGVRFSLGNGKHNGRAVEWMDSTGK 660

Query: 386 EILLWQQMMERPNFWVESCIPLRSSLE 412
           E+ LWQ M+ RPNFWVE  + LR SLE
Sbjct: 661 ELSLWQNMINRPNFWVEGALVLRPSLE 687

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019650|gb|EGI60124.1| Synaptotagmin-like protein 5 [Acromyrmex echinatior]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/409 (60%), Positives = 298/409 (72%), Gaps = 26/409 (6%)

Query: 29   TAGERDFSVSS-QQDKQASPDDLSAHSEA------GLNKSVSSILTDDDVTERLPHH--- 78
            T  +RD S S  QQ    + DD S+ SEA      G      S  T  D+ +  P H   
Sbjct: 2919 TTSKRDNSRSRRQQTMSLTSDDGSSLSEACSTPIIGAGSRAGSSHTVLDMDDIDPGHLAT 2978

Query: 79   --NKSLLGARSDSMASVYSGAGEGRY-GSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLA 135
              + S LGARSDSMASVYSGAGEGR   SV+V GEVEF LQY+YK    E+HV +CK+LA
Sbjct: 2979 RSSLSSLGARSDSMASVYSGAGEGRCCRSVVVTGEVEFALQYDYKNLTFEVHVTKCKNLA 3038

Query: 136  PVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL 195
            PVD KR+RSDPYVKVYLLPDKSK+GKRKT+VKKHTL+P F+E LKF ++L  LE RTLWL
Sbjct: 3039 PVDVKRKRSDPYVKVYLLPDKSKSGKRKTKVKKHTLNPEFNETLKFHMSLSGLETRTLWL 3098

Query: 196  SVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFV 255
            +VWHSDMFGRNDFLGEV M LENK+FDDP+P  YPLQER+E  D+ +  KGE+I+GLKFV
Sbjct: 3099 TVWHSDMFGRNDFLGEVRMPLENKIFDDPTPHWYPLQERTEPFDDPVAYKGEVIVGLKFV 3158

Query: 256  PP-----EDSSLSSAKKSSSAAK-----GSLHVLIKEAKSLCPVKSN--TVDAFCKAYLL 303
            PP     E    SSA++ SS  K     G+LHVL+KEA++L     N  T D FCK+YLL
Sbjct: 3159 PPDPAQQERDRESSAERGSSKTKKNWSRGALHVLVKEARNLQTRGKNSGTCDPFCKSYLL 3218

Query: 304  PDKGRASKHKTGIIKRS-TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGG 362
            PDKGR+ K KTG+++RS  SP W HT +Y+DVSL+EL+ER LELTVWDHDR+ SNEFLGG
Sbjct: 3219 PDKGRSGKQKTGVVRRSGGSPVWGHTFIYKDVSLQELAERGLELTVWDHDRIASNEFLGG 3278

Query: 363  IRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
            +R NLG GKHY K VDWMD++G+E+ LWQ M+ERPNFWVE  + LR +L
Sbjct: 3279 VRFNLGTGKHYGKSVDWMDATGRELSLWQNMLERPNFWVEGAVTLRPNL 3327

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
FB|FBgn0264754	2645	btsz "bitesize" [Drosophila me	0.508	0.080	0.604	3.6e-111
UNIPROTKB|E2RS38	734	SYTL5 "Uncharacterized protein	0.546	0.311	0.434	3.7e-72
UNIPROTKB|E2RS41	756	SYTL5 "Uncharacterized protein	0.539	0.298	0.402	2.2e-70
UNIPROTKB|F1NUG3	695	F1NUG3 "Uncharacterized protei	0.904	0.545	0.407	5.5e-70
MGI|MGI:2668451	753	Sytl5 "synaptotagmin-like 5" [	0.766	0.426	0.435	8e-69
UNIPROTKB|E1BPE2	671	SYTL4 "Uncharacterized protein	0.766	0.478	0.425	1.7e-68
ZFIN|ZDB-GENE-070912-424	745	sytl5 "synaptotagmin-like 5" [	0.923	0.519	0.388	3.5e-68
UNIPROTKB|E2R9U0	671	SYTL4 "Uncharacterized protein	0.766	0.478	0.428	5.6e-68
UNIPROTKB|Q8TDW5	730	SYTL5 "Synaptotagmin-like prot	0.887	0.509	0.409	5.6e-68
UNIPROTKB|D4A074	731	Sytl5 "Synaptotagmin-like prot	0.904	0.518	0.407	2.4e-67

FB|FBgn0264754 btsz "bitesize" [Drosophila melanogaster (taxid:7227)]

 Score = 698 (250.8 bits), Expect = 3.6e-111, Sum P(2) = 3.6e-111
 Identities = 136/225 (60%), Positives = 171/225 (76%)

Query:    40 QQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLP--HHNKSLL---GARSDSMASVY 94
             Q D   SP    A SE    +S      D+D+ +RL   H N+S L   G RS+SMASVY
Sbjct:  2242 QADGSGSPIQSRASSETWPTQS------DEDI-DRLVAMHQNRSSLSSLGVRSESMASVY 2294

Query:    95 SGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP 154
             SGAGEGRYG+V+VKG+VEF +QYNYK  ALE+HV +CKDLA VD KR RSDPYVKVYLLP
Sbjct:  2295 SGAGEGRYGTVVVKGQVEFAMQYNYKLSALEVHVVRCKDLAAVDAKRNRSDPYVKVYLLP 2354

Query:   155 DKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMM 214
             DKSKAGKRKT+VKKHTL+P+FDE ++F   +  LE RTLWL+VWHSDMFGRNDFLGEV +
Sbjct:  2355 DKSKAGKRKTKVKKHTLNPIFDETMRFHTPISSLESRTLWLTVWHSDMFGRNDFLGEVSV 2414

Query:   215 SLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPED 259
             +L+ ++FD+P  + Y LQERSE  DE+   +G++++GLK++PPE+
Sbjct:  2415 NLQGRLFDNPQSQWYLLQERSEPFDEVATYRGDIVVGLKYIPPEN 2459

GO:0048489 "synaptic vesicle transport" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0045793 "positive regulation of cell size" evidence=IMP

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0010004 "gastrulation involving germ band extension" evidence=IMP

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0043297 "apical junction assembly" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0042249 "establishment of planar polarity of embryonic epithelium" evidence=IMP

UNIPROTKB|E2RS38 SYTL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 421 (153.3 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
 Identities = 106/244 (43%), Positives = 144/244 (59%)

Query:    19 LSPVFDEVL-KTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPH 77
             LS  F E L  T   R  SV    DK    D L   +E G+N  VSS  + +       H
Sbjct:   329 LSGSFPEDLDNTVNIRSKSVPGALDKDL--DSLE-ETEEGVNDLVSSRFSANT------H 379

Query:    78 HNKSLLGARS-DSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAP 136
                S L   S +SM SVYS  G+  YG+V V GE+   + Y YK G L I VK C++LA 
Sbjct:   380 SLASGLSTTSLNSMMSVYSETGD--YGNVKVSGEILLHISYCYKTGGLYIFVKNCRNLAI 437

Query:   137 VDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLS 196
              D K+QR+D YVK YLLPDKS+  KRKT+++  T +P F+E LK+ ++   LE RTL LS
Sbjct:   438 GDEKKQRTDAYVKSYLLPDKSRNNKRKTKIRTGT-NPEFNETLKYTISHTQLETRTLQLS 496

Query:   197 VWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDEL-ICSKGELIIGLKFV 255
             VWH D FGRN FLGEV +  ++  F++PS + + LQ + E   ++ +  KGEL + L+++
Sbjct:   497 VWHYDRFGRNSFLGEVEIPFDSWNFENPSDEWFVLQPKVEFAADIGLHYKGELTVSLRYI 556

Query:   256 PPED 259
             PPE+
Sbjct:   557 PPEE 560

GO:0006887 "exocytosis" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RS41 SYTL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 406 (148.0 bits), Expect = 2.2e-70, Sum P(2) = 2.2e-70
 Identities = 95/236 (40%), Positives = 138/236 (58%)

Query:    31 GERDFSVSSQQDKQASPDDL-SAHSEAGLNKSVSSILTDDDVTERLPHHNKSLLGARSD- 88
             G  D  + S ++ +   +DL S+   A  +   S + T             ++  A SD 
Sbjct:   350 GALDKDLDSLEETEEGVNDLVSSRFSANTHSLASGLSTSSQAGSDRKWTYLNVPDADSDT 409

Query:    89 ----SMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRS 144
                 SM SVYS  G+  YG+V V GE+   + Y YK G L I VK C++LA  D K+QR+
Sbjct:   410 TSLNSMMSVYSETGD--YGNVKVSGEILLHISYCYKTGGLYIFVKNCRNLAIGDEKKQRT 467

Query:   145 DPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFG 204
             D YVK YLLPDKS+  KRKT+++  T +P F+E LK+ ++   LE RTL LSVWH D FG
Sbjct:   468 DAYVKSYLLPDKSRNNKRKTKIRTGT-NPEFNETLKYTISHTQLETRTLQLSVWHYDRFG 526

Query:   205 RNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDEL-ICSKGELIIGLKFVPPED 259
             RN FLGEV +  ++  F++PS + + LQ + E   ++ +  KGEL + L+++PPE+
Sbjct:   527 RNSFLGEVEIPFDSWNFENPSDEWFVLQPKVEFAADIGLHYKGELTVSLRYIPPEE 582

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F1NUG3 F1NUG3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 168/412 (40%), Positives = 237/412 (57%)

Query:    28 KTAGERDFSVSSQQDKQASPDDLSAHSEA---GLNKSVSSI-LTDDDVTE-------RLP 76
             ++  E D S S  + KQ   D LS  S++    L++ +  +  T++D+ +       R  
Sbjct:   282 RSRSEIDLSESFSEGKQ---DTLSIRSKSVPSTLDEELDYLDETEEDIDDIVASRYSRKR 338

Query:    77 HHNKSLLGARS-DSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLA 135
              H  S L   S +SM SVYS  G+  Y +V V GE+   + Y+YK GAL I VK C++LA
Sbjct:   339 GHLTSGLSRTSINSMLSVYSETGD--YSNVKVSGEILLQINYSYKTGALNILVKSCRNLA 396

Query:   136 PVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL 195
              VD K+QR+DPYVK YLLPDKS+  KRKT++K ++ +P F+E LK+ ++   LE RTL L
Sbjct:   397 IVDEKKQRTDPYVKAYLLPDKSRQSKRKTKIKSNSTNPEFNETLKYVISHTQLETRTLQL 456

Query:   196 SVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDEL-ICSKGELIIGLKF 254
             SVWH D FGRN FLGEV +  ++  F++   + + LQ + E+  ++ +  KGEL + L++
Sbjct:   457 SVWHYDRFGRNSFLGEVEIPFDSWNFENQGDEWFVLQPKVEVATDVGLQYKGELTVVLRY 516

Query:   255 VPPE--------------DXXXXXXXXXXXXXXXXXHVLIKEAKSLCPVKSN-TVDAFCK 299
             +PPE                                 V+IKEAK+L  VKS  T D F K
Sbjct:   517 IPPEINLMLPLGQFQGKKSFKKGKKGENHLPSGGILEVVIKEAKNLTAVKSGGTSDTFVK 576

Query:   300 AYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRLTSNEF 359
              YLLPD  +A+KHKT I+K++ +PQWNHT  +  +            TVWD + L+SN F
Sbjct:   577 GYLLPDDNKATKHKTPIVKKNVNPQWNHTFAFSGLNSRDIRNVCLELTVWDKESLSSNIF 636

Query:   360 LGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
             LGG+RL+ G G    K VDWMDS G+E  LWQ+M++ P   VE  + LRSS+
Sbjct:   637 LGGVRLSTGSGVSNGKEVDWMDSQGEEQHLWQKMIDSPGTSVEGILMLRSSM 688

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

MGI|MGI:2668451 Sytl5 "synaptotagmin-like 5" [Mus musculus (taxid:10090)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 148/340 (43%), Positives = 204/340 (60%)

Query:    88 DSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPY 147
             +SM SVYS  G+  YG+V V GE+   + Y YK G L I VK C++LA  D K+QR+D Y
Sbjct:   412 NSMMSVYSETGD--YGNVKVTGEILLHISYCYKTGGLYIFVKSCRNLATGDEKKQRTDAY 469

Query:   148 VKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND 207
             VK YLLPDKS+  KRKT+++  T +P F+E LK+ ++   LE RTL LSVWH D FGRN 
Sbjct:   470 VKSYLLPDKSRNNKRKTKIRTGT-NPEFNETLKYTISHTQLETRTLQLSVWHYDRFGRNS 528

Query:   208 FLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICS-KGELIIGLKFVPPEDXXXXXXX 266
             FLGEV ++ ++  F++P  + + LQ + E+  ++    KGEL I L+++PPE+       
Sbjct:   529 FLGEVEIAFDSWNFENPCDEWFVLQPKVELAPDISLQYKGELTIVLRYIPPEENLIFPAG 588

Query:   267 X--------------XXXXXXXXXHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASK 311
                                      V IK+AK+L  VKS  T D+F K YLLPD  +A+K
Sbjct:   589 QRQEKKIFKRGKKKESSSISGGILEVFIKKAKNLTAVKSGGTSDSFVKGYLLPDDNKATK 648

Query:   312 HKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGHGK 371
             HKT ++K+S +P+WNHT ++  +            T+WD +  +SN FLGG+RLN G G 
Sbjct:   649 HKTAVVKKSVNPEWNHTFIFSGLYPQDIKNACLELTIWDKEAFSSNVFLGGVRLNSGSGM 708

Query:   372 HYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
              Y K VDWMDS G+E  LWQ+M + P   VE  + LRSS+
Sbjct:   709 SYGKTVDWMDSHGEEQRLWQKMADNPGTSVEGVLMLRSSM 748

GO:0005515 "protein binding" evidence=IPI

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006887 "exocytosis" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1BPE2 SYTL4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 139/327 (42%), Positives = 199/327 (60%)

Query:    89 SMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYV 148
             SM S+YS AG+  +G++ V G++ F L+Y  +  AL IHVK+C+ LA  D  ++RS+PYV
Sbjct:   340 SMMSIYSEAGD--FGNIFVTGKIAFSLKYEQQTQALVIHVKECQQLAYADEAKKRSNPYV 397

Query:   149 KVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDF 208
             K YLLPDKS+ GKRKT +K+ T++P++DE+L++++    L  RTL  SVWH   FGRN F
Sbjct:   398 KAYLLPDKSRQGKRKTSIKQDTINPLYDEILRYEIPESLLAQRTLQFSVWHHGRFGRNTF 457

Query:   209 LGEVMMSLENKVFDDPSPKCYPLQER--SEILDELICSKGELIIGLKFVPPEDX-XXXXX 265
             LGE  + +++   D     C PL  +  +E    L   KGEL++ LK++P          
Sbjct:   458 LGEAEVQMDSWKLDKKLDHCLPLHGKISAESSTSLPAHKGELVVSLKYIPASKLPVGSDR 517

Query:   266 XXXXXXXXXXXHVLIKEAKSLCPVK-SNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324
                         V IKEAK+L   K   T D+F K YLLP + +ASK KT ++K++ +P 
Sbjct:   518 KKSKGGEGGELQVWIKEAKNLTAAKLGGTSDSFVKGYLLPLRNKASKRKTPVVKKTLNPH 577

Query:   325 WNHTVVYRDVXXXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSG 384
             +NHT VY  V            TVWD + L SN+FLGG+RL++G G    ++VDWMDS+G
Sbjct:   578 YNHTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLGGVRLSVGTGISNGEVVDWMDSTG 637

Query:   385 KEILLWQQMMERPNFWVESCIPLRSSL 411
             +E+ LWQ+M + P  W E  + LRSS+
Sbjct:   638 EEVSLWQKMRQYPGSWAEGTLQLRSSM 664

GO:0071985 "multivesicular body sorting pathway" evidence=IEA

GO:0050714 "positive regulation of protein secretion" evidence=IEA

GO:0046676 "negative regulation of insulin secretion" evidence=IEA

GO:0045921 "positive regulation of exocytosis" evidence=IEA

GO:0042043 "neurexin family protein binding" evidence=IEA

GO:0030141 "secretory granule" evidence=IEA

GO:0019898 "extrinsic to membrane" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

ZFIN|ZDB-GENE-070912-424 sytl5 "synaptotagmin-like 5" [Danio rerio (taxid:7955)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 161/414 (38%), Positives = 227/414 (54%)

Query:    21 PVFDEVLKTAGERDFSVSSQQDKQASPDD-LSAHSEAGLNKSVSSILTDDDV--TER--- 74
             P+        G  D  ++S+QD     D  LSAH +   N+SV S L       +ER   
Sbjct:   331 PLISRCRSVPGLNDGDMASEQDSDEDIDAVLSAHYKT--NRSVCSYLESSSTPASERKWG 388

Query:    75 -LPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKD 133
              L   +        +S+ SVYS  G+  YGSV V GE+   + Y+YK GAL + V++C+ 
Sbjct:   389 FLNVPDSDADTTSINSLMSVYSETGD--YGSVRVSGEILLNISYSYKTGALNVLVRECRC 446

Query:   134 LAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTL 193
             LA  D +RQR+D YVK YLLPDKS+  KRKT +K ++ +PVF+E L++ ++   LE RTL
Sbjct:   447 LATGDERRQRTDAYVKTYLLPDKSRQSKRKTSIKSNSTNPVFNENLRYVVSHSQLETRTL 506

Query:   194 WLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER--SEILDELICSKGELIIG 251
              +SVWH D FG N+FLGE  ++ ++  FD    + + LQ R  S+ +D ++  KGEL + 
Sbjct:   507 QVSVWHHDRFGHNNFLGETELTFDSWEFDTQIEEWFALQPRIESDYVDSVMHYKGELTVV 566

Query:   252 LKFVPPE-------DXXXXXXXXXXXXXXXXX-------HVLIKEAKSLCPVKSNTVDAF 297
             LK++P E       D                         +L+KEAK+L  VK  + D F
Sbjct:   567 LKYIPAERNVSLPLDQVQVKKGFLKGKKKTITLPKGGMVELLVKEAKNLTAVKGGSSDPF 626

Query:   298 CKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRLTSN 357
              K YLLPD  +++KHKT ++KRS +P+WNHT  Y  +            TVWD +   SN
Sbjct:   627 VKGYLLPDDKKSTKHKTAVVKRSVNPRWNHTFTYCGLQHSDLDSVCLELTVWDREPFASN 686

Query:   358 EFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
              FLGG+RL  G G  Y K VDW D+ G+E  LWQ+M++ P    E  + LRSS+
Sbjct:   687 VFLGGVRLGAGTGLSYGKEVDWNDAYGEEQRLWQRMIDNPEVPQECTLMLRSSM 740

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

UNIPROTKB|E2R9U0 SYTL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 140/327 (42%), Positives = 198/327 (60%)

Query:    89 SMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYV 148
             SM S+YS AG+  +G++ V G++ F L+Y  +  AL IHVK+C  LA  D  ++RS+PYV
Sbjct:   340 SMMSIYSEAGD--FGNIFVTGKIVFTLKYEQQTQALVIHVKECHQLAYADEAKKRSNPYV 397

Query:   149 KVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDF 208
             K YLLPDKS+ GKRKT +K+ T++P++DE L++++    L  RTL  SVWH   FGRN F
Sbjct:   398 KTYLLPDKSRQGKRKTSIKRDTINPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTF 457

Query:   209 LGEVMMSLENKVFDDPSPKCYPLQER--SEILDELICSKGELIIGLKFVPPEDX-XXXXX 265
             LGE  + +++   D+    C PL  +  +E    L   KGEL++ LK++P          
Sbjct:   458 LGEAEVQMDSWKLDEKLDHCLPLHGKISAESPTGLTSHKGELVVSLKYIPASKLPVGGVQ 517

Query:   266 XXXXXXXXXXXHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324
                         V IKEAK+L   KS  T D+F K YLLP + +ASK KT ++K++ +P 
Sbjct:   518 KKSKGGEGGELQVWIKEAKNLMAAKSGGTSDSFVKGYLLPMRNKASKRKTPVMKKTLNPH 577

Query:   325 WNHTVVYRDVXXXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSG 384
             +NHT VY  V            TVWD + L SN+FLGG+RL +G G    ++VDWMDS+G
Sbjct:   578 YNHTFVYNGVRLEDLQHMCLELTVWDREPLASNDFLGGVRLGVGTGISNGEVVDWMDSTG 637

Query:   385 KEILLWQQMMERPNFWVESCIPLRSSL 411
             +E+ LWQ+M + P  W E  + LRSS+
Sbjct:   638 EEVSLWQKMRQYPGSWAEGTLQLRSSM 664

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|Q8TDW5 SYTL5 "Synaptotagmin-like protein 5" [Homo sapiens (taxid:9606)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 162/396 (40%), Positives = 223/396 (56%)

Query:    32 ERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNKSLLGARSDSMA 91
             E   S+ S+    A   D    +E  ++  VSS L+ +  T RL      L     +SM 
Sbjct:   338 EDTVSIRSKSVPGALDKDSLEETEESIDALVSSQLSTN--THRLA---SGLSTTSLNSMM 392

Query:    92 SVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVY 151
             SVYS  G+  YG+V V GE+   + Y YK G L I VK C++LA  D K+QR+D YVK Y
Sbjct:   393 SVYSETGD--YGNVKVSGEILLHISYCYKTGGLYIFVKNCRNLAIGDEKKQRTDAYVKSY 450

Query:   152 LLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGE 211
             LLPDKS+  KRKT+++  T +P F+E LK+ ++   LE RTL LSVWH D FGRN FLGE
Sbjct:   451 LLPDKSRNNKRKTKIRTGT-NPEFNETLKYTISHTQLETRTLQLSVWHYDRFGRNSFLGE 509

Query:   212 VMMSLENKVFDDPSPKCYPLQERSEILDEL-ICSKGELIIGLKFVPPEDXXXX------- 263
             V +  ++  F++P+ + + LQ + E   ++ +  KGEL + L+++PPE+           
Sbjct:   510 VEIPFDSWNFENPTDEWFVLQPKVEFAPDIGLQYKGELTVVLRYIPPEENLMLPPEQLQG 569

Query:   264 -------XXXXXXXXXXXXXHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTG 315
                                  V IKEAK+L  VKS  T D+F K YLLPD  +A+KHKT 
Sbjct:   570 NKTFKKGKKKESPVISGGILEVFIKEAKNLTAVKSGGTSDSFVKGYLLPDDSKATKHKTL 629

Query:   316 IIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGHGKHYSK 375
             +IK+S +PQWNHT ++  +            T+WD +  +SN FLGG+RLN G G  + K
Sbjct:   630 VIKKSVNPQWNHTFMFSGIHPQDIKNVCLELTIWDKEAFSSNIFLGGVRLNSGSGVSHGK 689

Query:   376 LVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
              VDWMDS G+E  LWQ+M   P    E  + LRSS+
Sbjct:   690 NVDWMDSQGEEQRLWQKMANNPGTPFEGVLMLRSSM 725

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|D4A074 Sytl5 "Synaptotagmin-like protein 5" [Rattus norvegicus (taxid:10116)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 168/412 (40%), Positives = 233/412 (56%)

Query:    19 LSPVFDEVLK-TAGERDFSVSSQQDKQA-SPDDLSAHSEAGLNKSVSSILTDDDVTERLP 76
             LS  F E L+ T+  R  SV    DK   S +D    +E G++  VSS  + +       
Sbjct:   329 LSESFAEDLEDTSSIRSRSVPGALDKDLNSLED----TEDGVDL-VSSRFSANT------ 377

Query:    77 HHNKSLLGARS-DSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLA 135
             H   S L   S +SM SVYS  G+  YG+V V GE+   + Y YK G L I VK C++LA
Sbjct:   378 HSLASGLSTTSLNSMMSVYSETGD--YGNVKVTGEILLHISYCYKTGGLYIFVKNCRNLA 435

Query:   136 PVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL 195
               D K+QR+D YVK YLLPDK++  KRKT+++  T +P F+E LK+ ++   LE RTL L
Sbjct:   436 IGDEKKQRTDAYVKSYLLPDKTRNNKRKTKIRTGT-NPEFNETLKYTISHTQLETRTLQL 494

Query:   196 SVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICS-KGELIIGLKF 254
             SVWH D FGRN FLGEV ++ ++  F++P  + + LQ + E+  ++    KGEL I L++
Sbjct:   495 SVWHYDRFGRNSFLGEVEIAFDSWNFENPCDEWFVLQPKVELAPDISLQYKGELTIVLRY 554

Query:   255 VPPEDXXXX--------------XXXXXXXXXXXXXHVLIKEAKSLCPVKSN-TVDAFCK 299
             +PPE+                                V IKEAK+L  VK+  T D+F K
Sbjct:   555 IPPEENLIFPVEQPQGKKIFKKGKKKESPAISGGILEVFIKEAKNLTAVKAGGTSDSFVK 614

Query:   300 AYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRLTSNEF 359
              YLLPD  +A+KHKT ++K+S +PQWNH  ++  +            T+WD +  +SN F
Sbjct:   615 GYLLPDDNKATKHKTAVVKKSVNPQWNHVFIFSGLYPQDIQNACLELTIWDKEAFSSNIF 674

Query:   360 LGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL 411
             LGG+RLN G G  + K VDWMDS G+E  LWQ+M + P   VE  + LRSS+
Sbjct:   675 LGGVRLNSGSGISHGKAVDWMDSRGEEQRLWQKMADNPGTSVEGVLMLRSSM 726

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	419
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	2e-80
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	2e-66
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	8e-50
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	2e-46
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	7e-37
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	5e-28
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	9e-27
pfam00168	85	pfam00168, C2, C2 domain	1e-26
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	5e-26
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	7e-26
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	1e-24
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	3e-24
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	5e-24
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	5e-24
cd08381	122	cd08381, C2B_PI3K_class_II, C2 domain second repea	2e-23
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-22
cd00030	102	cd00030, C2, C2 domain	1e-22
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	5e-22
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-21
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	6e-21
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-20
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	2e-20
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	8e-20
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	9e-20
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-19
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	3e-19
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	2e-18
pfam00168	85	pfam00168, C2, C2 domain	3e-18
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	3e-18
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	5e-18
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	2e-17
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	4e-17
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	1e-16
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-16
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	1e-16
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-15
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	1e-15
cd00030	102	cd00030, C2, C2 domain	2e-15
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	4e-15
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-14
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	4e-14
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	2e-13
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	3e-13
cd04028	146	cd04028, C2B_RIM1alpha, C2 domain second repeat co	1e-12
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	2e-12
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	5e-12
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	3e-11
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	4e-11
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	5e-11
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	3e-10
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	8e-10
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	2e-09
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	4e-09
cd08680	124	cd08680, C2_Kibra, C2 domain found in Human protei	5e-09
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	9e-09
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-08
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	1e-08
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-08
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	3e-08
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	3e-08
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	4e-08
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	4e-08
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	4e-08
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	6e-08
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	7e-08
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	1e-07
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	1e-07
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	2e-07
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	2e-07
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-07
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	5e-07
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	6e-07
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	7e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	7e-07
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-06
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	2e-06
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	3e-06
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	3e-06
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	3e-06
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	4e-06
cd08409	137	cd08409, C2B_Synaptotagmin-15, C2 domain second re	9e-06
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	9e-06
cd08406	136	cd08406, C2B_Synaptotagmin-12, C2 domain second re	1e-05
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	1e-05
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	1e-05
cd08408	138	cd08408, C2B_Synaptotagmin-14_16, C2 domain second	3e-05
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	4e-05
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	5e-05
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	5e-05
cd08685	119	cd08685, C2_RGS-like, C2 domain of the Regulator O	6e-05
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	6e-05
cd08392	128	cd08392, C2A_SLP-3, C2 domain first repeat present	1e-04
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	1e-04
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	2e-04
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	2e-04
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	2e-04
cd08407	138	cd08407, C2B_Synaptotagmin-13, C2 domain second re	2e-04
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	5e-04
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	7e-04
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	7e-04
cd08389	124	cd08389, C2A_Synaptotagmin-14_16, C2A domain first	0.001
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	0.001
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	0.002
cd04010	148	cd04010, C2B_RasA3, C2 domain second repeat presen	0.002
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	0.002
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	0.002
cd08677	118	cd08677, C2A_Synaptotagmin-13, C2 domain	0.002
PLN02952	599	PLN02952, PLN02952, phosphoinositide phospholipase	0.002
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	0.003
cd08408	138	cd08408, C2B_Synaptotagmin-14_16, C2 domain second	0.003
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	0.003
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	0.004
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	0.004

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score =  244 bits (624), Expect = 2e-80
 Identities = 97/165 (58%), Positives = 124/165 (75%), Gaps = 4/165 (2%)

Query: 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLL 303
           +GEL + LK+VPPE      +KK S+   G LHV +KEAK+L  +KS  T D+F K YLL
Sbjct: 1   RGELKVALKYVPPESEGALKSKKPST---GELHVWVKEAKNLPALKSGGTSDSFVKCYLL 57

Query: 304 PDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGI 363
           PDK + SK KT ++K+S +P WNHT VY  VS E+LS+ CLELTVWDHD+L+SN+FLGG+
Sbjct: 58  PDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGV 117

Query: 364 RLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLR 408
           RL LG GK Y + VDWMDS+G+EILLWQ+M++ PN WVE  +PLR
Sbjct: 118 RLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTLPLR 162

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score =  207 bits (529), Expect = 2e-66
 Identities = 73/123 (59%), Positives = 93/123 (75%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           GE+EF L YNYK G+LE+H+K+C++LA  D K++RS+PYVKVYLLPDKSK  KRKT VKK
Sbjct: 1   GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK 60

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
           +T +PVF+E LK+ ++   LE RTL LSVWH D FGRN FLGEV + L++   D    + 
Sbjct: 61  NTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEW 120

Query: 229 YPL 231
           YPL
Sbjct: 121 YPL 123

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score =  164 bits (417), Expect = 8e-50
 Identities = 70/125 (56%), Positives = 87/125 (69%)

Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
           +G V+F L Y+ K   L +HV QC+DLA  D K+QRSDPYVK YLLPDKS  GKRKT VK
Sbjct: 1   QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVK 60

Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPK 227
           K TL+PVF+E L++++  E+L  R L LSVWH D  GRN FLGEV + L +  + +  P 
Sbjct: 61  KKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPT 120

Query: 228 CYPLQ 232
            YPLQ
Sbjct: 121 WYPLQ 125

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score =  155 bits (394), Expect = 2e-46
 Identities = 65/124 (52%), Positives = 89/124 (71%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           GE+ F L Y+YK  +L +HVK+C++LA  D  ++RS+PYVK YLLPDKS+  KRKT +K+
Sbjct: 2   GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR 61

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
           +T +PV++E LK+ ++   LE RTL LSVWH D FGRN FLGEV + L++  FD    +C
Sbjct: 62  NTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEEC 121

Query: 229 YPLQ 232
            PL 
Sbjct: 122 LPLH 125

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score =  130 bits (329), Expect = 7e-37
 Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 3/126 (2%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           GE+EF L YN++   LEI +K C++LA  D K+++  PYVKV LLPDKS   KRKT VKK
Sbjct: 2   GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK 61

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPK- 227
            T++PVF+E LK+ +  + L  R L +SVWHS    R  FLGEV++ L +  F+D   + 
Sbjct: 62  GTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQR 121

Query: 228 --CYPL 231
              YPL
Sbjct: 122 FLWYPL 127

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score =  107 bits (268), Expect = 5e-28
 Identities = 40/109 (36%), Positives = 64/109 (58%), Gaps = 1/109 (0%)

Query: 111 VEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHT 170
           +   L YN ++  L + + +C +LA +D     SDP+VK+YL PD  K  K KT+VKK T
Sbjct: 2   ILVSLMYNTQRRGLIVGIIRCVNLAAMDAN-GYSDPFVKLYLKPDAGKKSKHKTQVKKKT 60

Query: 171 LSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK 219
           L+P F+E   + +   DL  +TL ++VW  D+   ND++G + + +  K
Sbjct: 61  LNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAK 109

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score =  103 bits (259), Expect = 9e-27
 Identities = 53/127 (41%), Positives = 78/127 (61%), Gaps = 3/127 (2%)

Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
           + G ++  L Y+     L + V Q +DL P D    R +PYVKVYLLPD+S+  KR+T+ 
Sbjct: 1   ITGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLR-NPYVKVYLLPDRSEKSKRRTKT 59

Query: 167 KKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPS 225
            K TL+P +++  ++  +  E L+ RTL ++VW  D  G NDFLGEV++ L + + DD  
Sbjct: 60  VKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDD-E 118

Query: 226 PKCYPLQ 232
           P  YPLQ
Sbjct: 119 PHWYPLQ 125

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score =  101 bits (255), Expect = 1e-26
 Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 5/89 (5%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L + V   K+L P D    +SDPYVKV L   K     +KT+V K+TL+PV++E   F++
Sbjct: 1   LRVTVISAKNLPPKDLNG-KSDPYVKVSLGGQKKD--TKKTKVVKNTLNPVWNETFTFEV 57

Query: 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEV 212
           TL +L    L + V+  D FG++DF+GEV
Sbjct: 58  TLPELA--ELRIEVYDYDRFGKDDFIGEV 84

Length = 85

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score =  101 bits (254), Expect = 5e-26
 Identities = 45/107 (42%), Positives = 67/107 (62%), Gaps = 9/107 (8%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVD---TKRQRSDPYVKVYLLPDKSKAGKRKTR 165
           G+++F L Y+++   L + + Q  DL  +D   T    SDPYVKVYLLPDK K  K +T+
Sbjct: 3   GKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGT----SDPYVKVYLLPDKKK--KFETK 56

Query: 166 VKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEV 212
           V + TL+PVF+E   F++   +L  +TL  SV+  D F ++D +GEV
Sbjct: 57  VHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEV 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score =  101 bits (253), Expect = 7e-26
 Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 2/96 (2%)

Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV 174
           L+ + K   L + V++ K+L P+D     SDPYVK+ L+PD     K+KT+  K TL+PV
Sbjct: 6   LKISVKDNKLTVEVREAKNLIPMDPNGL-SDPYVKLKLIPDPKNETKQKTKTIKKTLNPV 64

Query: 175 FDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLG 210
           ++E   F L   D + R L + VW  D   RNDF+G
Sbjct: 65  WNETFTFDLKPADKD-RRLSIEVWDWDRTTRNDFMG 99

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 97.7 bits (244), Expect = 1e-24
 Identities = 37/107 (34%), Positives = 64/107 (59%)

Query: 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
            G+L V++  AK+L  +  +  D + K YLLPD  + +K KT +++++ +P +N  +VY 
Sbjct: 12  NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYD 71

Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDW 379
            + +E+L +R L+++VW HD L  NEFLGG+ + L       +   W
Sbjct: 72  GLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKW 118

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 96.2 bits (240), Expect = 3e-24
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 18/137 (13%)

Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPV--KSNTVDAFCKAYLL 303
           GE+   L +               +   GSL V IKE ++L     K    + + K YLL
Sbjct: 1   GEIEFSLSY---------------NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLL 45

Query: 304 PDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGI 363
           PDK + SK KT + K +T+P +N T+ Y  +S  +L  R L+L+VW HDR   N FLG +
Sbjct: 46  PDKSKQSKRKTSVKKNTTNPVFNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEV 104

Query: 364 RLNLGHGKHYSKLVDWM 380
            + L      S+  +W 
Sbjct: 105 EIPLDSWDLDSQQSEWY 121

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 97.0 bits (242), Expect = 5e-24
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 14/122 (11%)

Query: 108 KGEVEFGLQY------------NYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPD 155
           +GE++  L+Y                G L + VK+ K+L  + +    SD +VK YLLPD
Sbjct: 1   RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKS-GGTSDSFVKCYLLPD 59

Query: 156 KSKAGKRKTRVKKHTLSPVFDEVLKF-QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMM 214
           KSK  K+KT V K +++PV++    +  ++ EDL    L L+VW  D    NDFLG V +
Sbjct: 60  KSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRL 119

Query: 215 SL 216
            L
Sbjct: 120 GL 121

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 96.1 bits (240), Expect = 5e-24
 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           GE+   L Y      L + V + ++L P D K   SDPYVKV LL    K  K+KT VKK
Sbjct: 1   GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGL-SDPYVKVSLLQGGKKLKKKKTSVKK 59

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
            TL+PVF+E   F +  E LE  +L ++V   D  GRN+ +G+V++  ++
Sbjct: 60  GTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

 Score = 93.9 bits (234), Expect = 2e-23
 Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 5/125 (4%)

Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
            G+V+  + Y  K G L + V   K+L  +D      DPYVK YLLPD  K  KRKT+V 
Sbjct: 1   GGQVKLSISY--KNGTLFVMVMHAKNLPLLDG--SDPDPYVKTYLLPDPQKTTKRKTKVV 56

Query: 168 KHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSP 226
           + T +P F+E+L +  L +EDL+ R L +SVW  D    N+FLG V + L+       + 
Sbjct: 57  RKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETE 116

Query: 227 KCYPL 231
           K YPL
Sbjct: 117 KWYPL 121

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 15/132 (11%)

Query: 272 AKGSLHVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVV 330
            +  L V I    +L  + +N   D F K YL PD G+ SKHKT + K++ +P++N    
Sbjct: 11  QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFF 70

Query: 331 YRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLW 390
           Y D+   +L+++ LE+TVWD D   SN+++GG++L +             ++ G+ +  W
Sbjct: 71  Y-DIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGI-------------NAKGERLRHW 116

Query: 391 QQMMERPNFWVE 402
              ++ P+  +E
Sbjct: 117 LDCLKNPDKKIE 128

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 91.4 bits (227), Expect = 1e-22
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 8/109 (7%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L + V + ++L   D    +SDPYVKV L   +    K KT+V K+TL+PV++E  +F +
Sbjct: 1   LRVTVIEARNLPAKDLNG-KSDPYVKVSLGGKQ----KFKTKVVKNTLNPVWNETFEFPV 55

Query: 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD-PSPKCYPL 231
              D E  TL + VW  D F ++DFLGEV + L   +          PL
Sbjct: 56  L--DPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 90.4 bits (225), Expect = 5e-22
 Identities = 46/112 (41%), Positives = 73/112 (65%), Gaps = 3/112 (2%)

Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
             G ++  ++Y+ ++  L + V +C++L P D      DPYV++YLLPDKSK+ +RKT V
Sbjct: 1   PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCD-SSDIPDPYVRLYLLPDKSKSTRRKTSV 59

Query: 167 KKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF--GRNDFLGEVMMSL 216
           KK  L+PVFDE  +F ++LE+L+ RTL ++V +S  F       LG+V++ L
Sbjct: 60  KKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDL 111

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 88.3 bits (219), Expect = 2e-21
 Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L + +   ++L P D   + SDPYVKV L  D  +  K+KT+V K+TL+PV++E   F+ 
Sbjct: 2   LTVKIISARNLPPKDKGGK-SDPYVKVSLDGDPKE--KKKTKVVKNTLNPVWNE--TFEF 56

Query: 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
            +   E   L + V+  D FGR+DF+G+V + L +
Sbjct: 57  EVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSD 91

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 87.8 bits (218), Expect = 6e-21
 Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 3/109 (2%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G + F L+YN ++ AL +++ +C+DL  +D +   SDPYVK+ LLP+K    K KTRV +
Sbjct: 3   GTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEH--KVKTRVLR 60

Query: 169 HTLSPVFDEVLKF-QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
            T +PV+DE   F  +    L+  +L  +V   D + R+D +GEV+  L
Sbjct: 61  KTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPL 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 86.1 bits (214), Expect = 2e-20
 Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 1/99 (1%)

Query: 273 KGSLHVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVY 331
              L V + +A+ L P    ++ + + K YLLPD+   SK +T  +K++ +P+WN T  Y
Sbjct: 15  TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEY 74

Query: 332 RDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG 370
            +V  E L ER LE+TVWD+DR   N+FLG + ++L   
Sbjct: 75  SNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADA 113

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 85.8 bits (213), Expect = 2e-20
 Identities = 38/110 (34%), Positives = 68/110 (61%), Gaps = 2/110 (1%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G + F +QY+ ++  L + + + ++L P        DP+VKV LLPD+ ++   +++VK+
Sbjct: 1   GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRS--LQSKVKR 58

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
            T +P FDE   FQ++ ++L+ RTL LSV+  D F R+  +G V+  L++
Sbjct: 59  KTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKD 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 84.6 bits (210), Expect = 8e-20
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 11/122 (9%)

Query: 101 RYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK--SK 158
            YG + VK        Y   + +L + +   ++L P+D+    SDP+VKV LLP      
Sbjct: 1   PYGVLTVK------AYYRASEQSLRVEILNARNLLPLDSN-GSSDPFVKVELLPRHLFPD 53

Query: 159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECR--TLWLSVWHSDMFGRNDFLGEVMMSL 216
               KT+VKK TL P+FDE  +F +  E        L  +V   D+ G NDF GE  + L
Sbjct: 54  VPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113

Query: 217 EN 218
            +
Sbjct: 114 ND 115

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 84.3 bits (209), Expect = 9e-20
 Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 3/111 (2%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G +EF L Y+    AL   + + K L  +D     SDPYVK+ LLP  SKA K +T+   
Sbjct: 2   GTLEFTLLYDPANSALHCTIIRAKGLKAMD-ANGLSDPYVKLNLLPGASKATKLRTKTVH 60

Query: 169 HTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
            T +P F+E L +  +T ED++ +TL L V   D FG NDFLGE  + L+ 
Sbjct: 61  KTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFG-NDFLGETRIPLKK 110

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 4/112 (3%)

Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
            G ++F + Y++++  L + + +  +L P       SDP+VK+YLLPDK    K +T+VK
Sbjct: 2   LGRIQFSVSYDFQESTLTLKILKAVEL-PAKDFSGTSDPFVKIYLLPDKKH--KLETKVK 58

Query: 168 KHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
           +  L+P ++E   F+    E L+ R L+L V   D F RND +GEV + L  
Sbjct: 59  RKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNK 110

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 82.5 bits (204), Expect = 3e-19
 Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 3/101 (2%)

Query: 270 SAAKGSLHVLIKEAKSLCP--VKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNH 327
                 LHV + + + L     K    D + K YLLPDK    K KT + K++ +P +N 
Sbjct: 11  DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNE 70

Query: 328 TVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLG 368
           T+ Y+ V  EEL  R L L+VW  D L  N FLG + ++LG
Sbjct: 71  TLRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLG 110

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 80.2 bits (198), Expect = 2e-18
 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 268 SSSAAKGSLHVLIKEAKSLC---PVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ 324
           S      SL+V +KE ++L      K  + + + K YLLPDK R SK KT I + +T+P 
Sbjct: 9   SYDYKTQSLNVHVKECRNLAYGDEAKKRS-NPYVKTYLLPDKSRQSKRKTSIKRNTTNPV 67

Query: 325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWM 380
           +N T+ Y  +S  +L  R L+L+VW +DR   N FLG + + L      S+  + +
Sbjct: 68  YNETLKY-SISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECL 122

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 6/90 (6%)

Query: 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDV 334
           L V +  AK+L P   N   D + K  L   K      KT ++K + +P WN T  + +V
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKD--TKKTKVVKNTLNPVWNETFTF-EV 57

Query: 335 SLEELSERCLELTVWDHDRLTSNEFLGGIR 364
           +L EL+E  L + V+D+DR   ++F+G + 
Sbjct: 58  TLPELAE--LRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 18/127 (14%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKV-YLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ 182
           L + V +C+DLA         DP+ +V      K+    ++T+VKK T +P FDE   F+
Sbjct: 1   LSVRVLECRDLALKSN--GTCDPFARVTLNYSSKTDT--KRTKVKKKTNNPRFDEAFYFE 56

Query: 183 LT-------------LEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCY 229
           LT              EDLE   L + +WH+ M   +DFLGEV + L+           Y
Sbjct: 57  LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWY 116

Query: 230 PLQERSE 236
            LQ R  
Sbjct: 117 FLQPREA 123

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 79.4 bits (196), Expect = 5e-18
 Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
            +GE+ F L+Y+   G L + + Q ++L P D     +DPY KV LLPD+S    +++++
Sbjct: 1   TRGELHFSLEYDKDMGILNVKLIQARNLQPRDFS-GTADPYCKVRLLPDRSNT--KQSKI 57

Query: 167 KKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDP 224
            K TL+P FDE   F++  ++L  RTL + ++  D F R++ +G V + L      + 
Sbjct: 58  HKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEK 115

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 78.2 bits (193), Expect = 2e-17
 Identities = 35/106 (33%), Positives = 64/106 (60%), Gaps = 1/106 (0%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G++ F L+Y    G L + + + K+L  +D     SDPYVK++L+ +  +  K+KT +KK
Sbjct: 2   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTIKK 60

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMM 214
            TL+P ++E   F++  E ++   L ++V   D  G+ND +G+V++
Sbjct: 61  RTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVL 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 76.9 bits (190), Expect = 4e-17
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 30/154 (19%)

Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSL-CPVKSNTVDAFCKAYLLP 304
           GEL++ L ++P       +A++        L V++ +A++L         D + K  LL 
Sbjct: 1   GELLLSLSYLP-------TAER--------LTVVVLKARNLPPSDGKGLSDPYVKVSLLQ 45

Query: 305 DKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIR 364
              +  K KT + K + +P +N    + DV  E+L E  L +TV D D +  NE +G  +
Sbjct: 46  GGKKLKKKKTSVKKGTLNPVFNEAFSF-DVPAEQLEEVSLVITVVDKDSVGRNEVIG--Q 102

Query: 365 LNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPN 398
           + LG            DS G+E+  W +M+  P 
Sbjct: 103 VVLG-----------PDSGGEELEHWNEMLASPR 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 75.8 bits (187), Expect = 1e-16
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 3/90 (3%)

Query: 274 GSLHVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
             L V ++EAK+L P+  N + D + K  L+PD    +K KT  IK++ +P WN T  + 
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTF- 71

Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGG 362
           D+   +   R L + VWD DR T N+F+G 
Sbjct: 72  DLKPADKDRR-LSIEVWDWDRTTRNDFMGS 100

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRD 333
           +LH  I  AK L  + +N   D + K  LLP   +A+K +T  + ++ +P++N T+ Y  
Sbjct: 16  ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75

Query: 334 VSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
           ++ E++  + L L V D DR   N+FLG  R+ L
Sbjct: 76  ITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPL 108

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 75.9 bits (187), Expect = 1e-16
 Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 1/107 (0%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           GE+   L YN     + +++ + ++L  +D     SDPYVKV+L+    +  K+KT +KK
Sbjct: 2   GELLLSLCYNPTANRITVNIIKARNLKAMDIN-GTSDPYVKVWLMYKDKRVEKKKTVIKK 60

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
            TL+PVF+E   F + LE L   TL ++V   D   RND +G++ + 
Sbjct: 61  RTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLG 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 72.1 bits (177), Expect = 1e-15
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 6/94 (6%)

Query: 275 SLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRD 333
           +L V I  A++L P  K    D + K  L  D     K KT ++K + +P WN T  +  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKE--KKKTKVVKNTLNPVWNETFEF-- 56

Query: 334 VSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
             +       LE+ V+D DR   ++F+G + + L
Sbjct: 57  -EVPPPELAELEIEVYDKDRFGRDDFIGQVTIPL 89

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 36/102 (35%), Positives = 60/102 (58%), Gaps = 1/102 (0%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           GE+ F L Y    G L + + + ++L  +D     SDPYVKV L+ +  +  K+KT VKK
Sbjct: 1   GELMFSLCYLPTAGRLTLTIIKARNLKAMDIT-GFSDPYVKVSLMCEGRRLKKKKTSVKK 59

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLG 210
           +TL+P ++E L F +  E+++  +L ++V   D  G N+ +G
Sbjct: 60  NTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDV 334
           L V + EA++L     N   D + K  L   +    K KT ++K + +P WN T  +   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQ----KFKTKVVKNTLNPVWNETFEFP-- 54

Query: 335 SLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVD 378
            + +     L + VWD DR + ++FLG + + L       K  +
Sbjct: 55  -VLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGE 97

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 71.1 bits (175), Expect = 4e-15
 Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 4/103 (3%)

Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
           S+ +  L V + + ++L P   S+  D + + YLLPDK ++++ KT + K + +P ++ T
Sbjct: 12  SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDET 71

Query: 329 VVYRDVSLEELSERCLELTVWDHDRL--TSNEFLGGIRLNLGH 369
             +  VSLEEL  R L++ V +         + LG + ++L  
Sbjct: 72  FEF-PVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSD 113

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 5/109 (4%)

Query: 275 SLHVLIKEAKSLCPVK--SNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
           +L + I +A  L P K  S T D F K YLLPDK    K +T + +++ +P WN T ++ 
Sbjct: 17  TLTLKILKAVEL-PAKDFSGTSDPFVKIYLLPDKKH--KLETKVKRKNLNPHWNETFLFE 73

Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
               E+L +R L L V D+DR + N+ +G + L L       +   W D
Sbjct: 74  GFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKD 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 44/127 (34%), Positives = 59/127 (46%), Gaps = 17/127 (13%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L + V +C DLA    K    DPY  V L+    K   ++T+VKK T +P FDE   F +
Sbjct: 2   LSVRVIECSDLA---LKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDV 58

Query: 184 TL-------------EDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC-Y 229
           T+             ED E   L + +WH+ M G + FLGEV + L        S +  Y
Sbjct: 59  TIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWY 118

Query: 230 PLQERSE 236
            LQ R E
Sbjct: 119 FLQPREE 125

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 36/156 (23%)

Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTV----DAFCKAY 301
           G++   L++VP                 G L V+I EAK+L   K   V    D + K +
Sbjct: 2   GDICFSLRYVP---------------TAGKLTVVILEAKNL---KKMDVGGLSDPYVKIH 43

Query: 302 LLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLG 361
           L+ +  R  K KT I KR+ +P +N +  + +V  E++ +  L +TV D+DR+  N+ +G
Sbjct: 44  LMQNGKRLKKKKTTIKKRTLNPYYNESFSF-EVPFEQIQKVHLIVTVLDYDRIGKNDPIG 102

Query: 362 GIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERP 397
             ++ LG            +++G E+  W  M+  P
Sbjct: 103 --KVVLG-----------CNATGAELRHWSDMLASP 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 66.5 bits (162), Expect = 3e-13
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           GE+   L Y    G L + + + K L   D   Q SDP+VK+ L+        +KT   +
Sbjct: 1   GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMS-QGSDPFVKIQLVHGLKLIKTKKTSCMR 59

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMM 214
            T+ P ++E   F++  E+LE  +L  +V+  ++   NDF+G +++
Sbjct: 60  GTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVI 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|175994 cd04028, C2B_RIM1alpha, C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 10/113 (8%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G+++ GL    K+G LE+ V + + L      +    PYVKVYLL  K    K+KT++ +
Sbjct: 18  GDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIAR 75

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND---FLGEVMMSLEN 218
            TL P++ + L F ++      +TL + VW    +GR D   F+G   + L++
Sbjct: 76  KTLDPLYQQQLVFDVSPTG---KTLQVIVWGD--YGRMDKKVFMGVAQILLDD 123

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 146

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 1/103 (0%)

Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
           +GE+   L Y      L + V + + L  +D     +DPYVKV L   K +  K+KT VK
Sbjct: 1   RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGL-ADPYVKVNLYYGKKRISKKKTHVK 59

Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLG 210
           K TL+PVF+E   F +  E+LE  ++   V  SD   +N+ +G
Sbjct: 60  KCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 62.8 bits (153), Expect = 5e-12
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 15/125 (12%)

Query: 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
             + V I +A++L  +  N T D + K +L+    R  K KT I KR+ +P +N + ++ 
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIF- 73

Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQ 392
           ++ LE L E  L +TV D DRL+ N+ +G I   LG             S G E+  W+ 
Sbjct: 74  NIPLERLRETTLIITVMDKDRLSRNDLIGKI--YLGW-----------KSGGLELKHWKD 120

Query: 393 MMERP 397
           M+ +P
Sbjct: 121 MLSKP 125

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 60.6 bits (147), Expect = 3e-11
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 1/106 (0%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           GE+   L Y      L + V + ++L   D  +  +DP+VKVYLL D  K  K+KT VK+
Sbjct: 2   GEILLSLSYLPTAERLTVVVVKARNLV-WDNGKTTADPFVKVYLLQDGRKISKKKTSVKR 60

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMM 214
              +P+F+E + F +    L+  +L ++V  S   G+   +G V++
Sbjct: 61  DDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVII 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 17/125 (13%)

Query: 273 KGSLHVLIKEAKSLCPVK--SNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVV 330
              L V I +A  L P      T D + K YLLPDK +  K +T + +++ +P +N T  
Sbjct: 15  SNQLTVGIIQAADL-PAMDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFT 71

Query: 331 YRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLW 390
           ++ V   EL  + L  +V+D DR + ++ +G +R+ L         VD     G     W
Sbjct: 72  FK-VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLL-------TVDL----GHVTEEW 119

Query: 391 QQMME 395
           + +  
Sbjct: 120 RDLES 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 11/129 (8%)

Query: 271 AAKGSLHVLIKEAKSLCPVK-SNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTV 329
                L V++ +A+ L  +  S   D + K  L   K R SK KT + K + +P +N + 
Sbjct: 12  PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESF 71

Query: 330 VYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLG-----HGKHYSKLVDWMDSSG 384
           V+ D+  EEL +  +E  V D DR+T NE +G  RL LG      G H+ K V   +   
Sbjct: 72  VF-DIPSEELEDISVEFLVLDSDRVTKNEVIG--RLVLGPKASGSGGHHWKEVC--NPPR 126

Query: 385 KEILLWQQM 393
           ++I  W  +
Sbjct: 127 RQIAEWHML 135

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 8/94 (8%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L  HV + +DLAP D +   SDP+V+V+           +T V K +  P ++EV +F+L
Sbjct: 2   LRCHVLEARDLAPKD-RNGTSDPFVRVFY-----NGQTLETSVVKKSCYPRWNEVFEFEL 55

Query: 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE 217
              +     L + VW  D+  +NDFLG+V+ S++
Sbjct: 56  --MEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQ 87

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 56.0 bits (136), Expect = 8e-10
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 126 IHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL 185
           ++V + ++L P D    +SDPY+K+ L   K K   R   +   TL+PVF ++  F+L  
Sbjct: 4   VYVVRARNLQPKDPN-GKSDPYLKIKLG--KKKINDRDNYIPN-TLNPVFGKM--FELEA 57

Query: 186 EDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
                  L +SV   D+ G +D +GE ++ LE++ F      C
Sbjct: 58  TLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFFSKHRATC 100

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 13/101 (12%)

Query: 122 GALEIHVKQCKDLAPVDT-----KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFD 176
           G L IHV + +DL   D       + +SDPYV V     +  A   K++V K  L+P ++
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIV-----RVGAQTFKSKVIKENLNPKWN 55

Query: 177 EVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE 217
           EV  ++  ++++  + L + ++  D   ++DFLG + + L 
Sbjct: 56  EV--YEAVVDEVPGQELEIELFDEDP-DKDDFLGRLSIDLG 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 136 PVDTKRQRSDPYVKVYL--LPDKSKAGKRKTRVKKH-TLSPVFDEVLKFQLTLEDLECRT 192
           P   K    DPYV+V +  LP    A K KT+V K+   +PV++E  +F +T+ +L    
Sbjct: 17  PKGDKGSIVDPYVEVEIHGLPADDSA-KFKTKVVKNNGFNPVWNETFEFDVTVPELA--F 73

Query: 193 LWLSVWHSDMFGRNDFLG 210
           L   V+  D    +DFLG
Sbjct: 74  LRFVVYDEDSGD-DDFLG 90

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176062 cd08680, C2_Kibra, C2 domain found in Human protein Kibra

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 111 VEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKR---KTRVK 167
           V+ GL+Y+    +L I V+Q ++L+ +    + S  YV+V LLP    +      +T+  
Sbjct: 3   VQIGLRYDSGDSSLVISVEQLRNLSALSIP-ENSKVYVRVALLP--CSSSTSCLFRTKAL 59

Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
           +    PVF+EV +  ++   L  +TL + V       + + LG   +SL
Sbjct: 60  EDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISL 108

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that promotes SWH pathway activity. Kibra contains two amino-terminal WW domains, an internal C2-like domain, and a carboxy-terminal glutamic acid-rich stretch. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 124

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 276 LHVLIKEAKSLCPV---KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
           L V +  A+ L PV    S+  DAF +         ++ +KT ++K+S +P WN      
Sbjct: 1   LKVRVVAARDL-PVMDRSSDLTDAFVEVKFG-----STTYKTDVVKKSLNPVWNSEWFRF 54

Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
           +V  EEL +  L++ V DHD  ++N+ +G + ++L
Sbjct: 55  EVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDL 89

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 122 GALEIHVKQCKDLAPVD-TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
           G L +HV + KDLA  D + + +SDPY  + +      A + KT+   +TL+P ++    
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV-----GAQRFKTQTIPNTLNPKWNY--W 53

Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDP---SPKCYPLQ 232
            +  +   + + L L +W  D F   D+LGE  ++LE    D     S K   L+
Sbjct: 54  CEFPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLK 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 14/98 (14%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKR---KTRVKKHTLSPVFDEVLK 180
           L+IH+K+ ++LA  D +   SDPYVK        K G +   K++     L+PV+DE  K
Sbjct: 2   LDIHLKEGRNLAARD-RGGTSDPYVKF-------KYGGKTVYKSKTIYKNLNPVWDE--K 51

Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
           F L +ED+    L++ V+  D    +DF+G   + L  
Sbjct: 52  FTLPIEDVTQ-PLYIKVFDYDRGLTDDFMGSAFVDLST 88

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 6/92 (6%)

Query: 275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDK--GRASKHKTGIIKRSTSPQWNHTVVY 331
           SL V I  A++L P+ SN + D F K  LLP          KT + K++  P ++ +  +
Sbjct: 17  SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEF 76

Query: 332 RDVSLEELSER--CLELTVWDHDRLTSNEFLG 361
            +V  E+ S     L  TV D+D L SN+F G
Sbjct: 77  -NVPPEQCSVEGALLLFTVKDYDLLGSNDFEG 107

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 21/115 (18%)

Query: 122 GALEIHVKQCKDLAPVDTKRQRS---DPYVKVYLLPDKSKAGKR--KTRVKKHTLSPVFD 176
           G + + +K   DL P+    +     DP+V +         G+R  +T  ++HTL+PVF+
Sbjct: 1   GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF-------GRRVFRTSWRRHTLNPVFN 53

Query: 177 EVLKFQ-LTLE---DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPK 227
           E L F+    E   D++ +     V   D F  ND++    +S++  +   P P 
Sbjct: 54  ERLAFEVYPHEKNFDIQFK-----VLDKDKFSFNDYVATGSLSVQELLNAAPQPD 103

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 144 SDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVL--KFQLTLEDLECRTLWLSVWHSD 201
            DP VKV +   K     + T VKK T  P ++E     F  + ++L  + + +SV+ S 
Sbjct: 21  IDPVVKVEVGGQK-----KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75

Query: 202 MFGRNDFLGE 211
               +  +G 
Sbjct: 76  SLRSDTLIGS 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 8/103 (7%)

Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL 354
           D + K  L+ +  R  K KT + K + +P +N  +V+ DV  E +    L + V D+DR+
Sbjct: 36  DPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVF-DVPPENVDNVSLIIAVVDYDRV 94

Query: 355 TSNEFLGGIRLN---LGHGK-HYSKLVDWMDSSGKEILLWQQM 393
             NE +G  R+     G G+ H++++   + +  K I  W Q+
Sbjct: 95  GHNELIGVCRVGPNADGQGREHWNEM---LANPRKPIAQWHQL 134

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 17/113 (15%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKR--KTRVKKHTLSPVFDEVLKF 181
           L + V   ++L   D    +SDP+VK YL       G++  KT+  K TL+PV++E  + 
Sbjct: 1   LTVDVISAENLPSADRN-GKSDPFVKFYL------NGEKVFKTKTIKKTLNPVWNESFEV 53

Query: 182 QLTLEDLECRT---LWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPL 231
            +       R    L + V+  D  G++D LG   + L +   ++ +    PL
Sbjct: 54  PVP-----SRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 50.7 bits (122), Expect = 4e-08
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 13/110 (11%)

Query: 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGK--RKTRVKKHTLSPVFDEVL 179
           G L + + +  DL   D     SDPYV        +K GK    TR+ +  L+PV++E  
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASF----AKFGKPLYSTRIIRKDLNPVWEETW 56

Query: 180 KFQLTLEDLECR-TLWLSVWHSDMFGRNDFLGEV------MMSLENKVFD 222
              +T ++++    L   +W SD F  +D LG V      ++   N +  
Sbjct: 57  FVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDRNWMGR 106

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 275 SLHVLIKEAKSLC--PVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
            L + IK  ++L     K      + K  LLPDK   SK KT + K + +P +N T+ Y 
Sbjct: 16  CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV 75

Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLG 361
            V  + LS R L+++VW    L    FLG
Sbjct: 76  -VEADLLSSRQLQVSVWHSRTLKRRVFLG 103

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 50.6 bits (122), Expect = 7e-08
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 27/138 (19%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF-Q 182
           L  ++ Q +DL   D K   SDP+ +V  L ++S+    +T V K TLSP +D+ L F +
Sbjct: 3   LRAYIYQARDLLAAD-KSGLSDPFARVSFL-NQSQ----ETEVIKETLSPTWDQTLIFDE 56

Query: 183 LTL----EDL--ECRTLWLSVWHSDMFGRNDFLG------EVMMSLENKVFDDPSPKCYP 230
           + L    E++      + + ++  D  G+++FLG       V + LE      P  + +P
Sbjct: 57  VELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDF--PPKLQWFP 114

Query: 231 L----QERSEILD--ELI 242
           +    Q   E+L   ELI
Sbjct: 115 IYKGGQSAGELLAAFELI 132

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 32/97 (32%), Positives = 59/97 (60%), Gaps = 4/97 (4%)

Query: 274 GSLHVLIKEAKSLCPVK-SNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
           G L+V + +A++L P   S T D +CK  LLPD+    + K  I K++ +P+++ + V+ 
Sbjct: 16  GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSK--IHKKTLNPEFDESFVF- 72

Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
           +V  +EL +R LE+ ++D D+ + +E +G + L L  
Sbjct: 73  EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAE 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
           G L++ V +  +LA  D     SDPYV + L        K KTRV K  L+PV++E L  
Sbjct: 2   GLLKVRVVRGTNLAVRDFTS--SDPYVVLTL-----GNQKVKTRVIKKNLNPVWNEEL-- 52

Query: 182 QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE 217
            L++ +     L L V+  D F ++D +GE  + LE
Sbjct: 53  TLSVPNPM-APLKLEVFDKDTFSKDDSMGEAEIDLE 87

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 15/105 (14%)

Query: 276 LHVLIKEAKSLCPVKSNTVDAF-CKAYLLPDKGRASKHKTGIIKRSTSPQWNHT------ 328
           L V + E + L    + T D F         K    +  T + K++ +P+++        
Sbjct: 1   LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKR--TKVKKKTNNPRFDEAFYFELT 58

Query: 329 ------VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
                      V  E+L +  L + +W    ++ ++FLG +R+ L
Sbjct: 59  IGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPL 103

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 15/103 (14%)

Query: 144 SDPYVKVYLLPDKSKAGKR----KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWH 199
           SDPYVK+ L              +T+  K TL+P ++E   F++     E R L   V+ 
Sbjct: 21  SDPYVKISLY--DPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVN--PREHRLL-FEVFD 75

Query: 200 SDMFGRNDFLGEVMMSLENKVFDDP------SPKCYPLQERSE 236
            +   R+DFLG+V + L N   + P      + K Y L+ RS 
Sbjct: 76  ENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS 118

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 20/139 (14%)

Query: 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
           G L + +K  + L   D      DPYV   +   +  A   +T+VKK T +PV++E    
Sbjct: 2   GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELA---RTKVKKDTSNPVWNETKYI 58

Query: 182 QL-TLEDLECRTLWLSVWHSDMFGRND-FLGEVMMSLENKVFDDPSPK--CYPLQERSEI 237
            + +L +     L L+V+  +   R D  +G     L + +  +P  +     L    + 
Sbjct: 59  LVNSLTE----PLNLTVYDFNDK-RKDKLIGTAEFDL-SSLLQNPEQENLTKNLLRNGK- 111

Query: 238 LDELICSKGELIIGLKFVP 256
                   GEL   L+F P
Sbjct: 112 ------PVGELNYDLRFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 2/104 (1%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G+++  L YN     L + V + + L  +D     +  YVKV L+        +KT V  
Sbjct: 2   GDIQISLTYNPTLNRLTVVVLRARGLRQLD--HAHTSVYVKVSLMIHNKVVKTKKTEVVD 59

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEV 212
              SP F+E   F++T   L+  +L LSV  S    ++  LG V
Sbjct: 60  GAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRV 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 6/38 (15%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ 41
          +SK  KRKT VKK+T +PVF+E LK      + +S  Q
Sbjct: 48 KSKQSKRKTSVKKNTTNPVFNETLK------YHISKSQ 79

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 137 VDTKRQRSDPYVKVYLLPDKSKAGKR-KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL 195
           +  K++  DPYV+V      S AG++ KT VKK++ +P ++E + F      L C  + +
Sbjct: 28  LGEKKELVDPYVEV------SFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL-CERIKI 80

Query: 196 SVWHSDMFGRNDFLGEVMMSL 216
            +   D  G +D +G   + L
Sbjct: 81  QIRDWDRVGNDDVIGTHFIDL 101

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 21/209 (10%)

Query: 122 GALEIHVKQCKDLAPVDTKRQR-SDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
           G +E+ +K  + L   D+      DPY+ V      S     KTRVKK+TL+PV++E   
Sbjct: 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTF----SDRVIGKTRVKKNTLNPVWNET-- 489

Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDE 240
           F + L       L LS++  + F  +  +G   + L   +  +P  K     E  E L  
Sbjct: 490 FYILLNSFTDP-LNLSLYDFNSFKSDKVVGSTQLDL-ALLHQNPVKK----NELYEFLRN 543

Query: 241 LICSKGELIIGLKFVPP-EDSSL--SSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAF 297
              + G L   L+F P  ED      S +    +  G L V ++E K+L  + S   +  
Sbjct: 544 TK-NVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKS 602

Query: 298 CKAYLLPDKGRASKHKTGIIKRSTSPQWN 326
            + Y    +     + TG +K +  P WN
Sbjct: 603 AELYTNAKE----VYSTGKLKFTNHPSWN 627

Length = 1227

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 15/134 (11%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L + V   +DL P D  +  S  YV++          K++TR K   L+PV++E L F +
Sbjct: 2   LVVEVVDAQDLMPKD-GQGSSSAYVELDFD-----GQKKRTRTKPKDLNPVWNEKLVFNV 55

Query: 184 T-LEDLECRTLWLSVWHSDMFGR-NDFLGEVMMSLENKVFDDPS-PKCYPLQERSEILDE 240
           +    L    L + V++    GR   FLG V +S  + V    +  + YPL++R   L  
Sbjct: 56  SDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRG--LFS 113

Query: 241 LICSKGELIIGLKF 254
            +  +GE  IGLK 
Sbjct: 114 RV--RGE--IGLKV 123

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEV 178
            +   L +HV + K L    T     + YVK+ L PDK    ++KT     + +P+F E 
Sbjct: 9   GQNRKLTLHVLEAKGL--RSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHET 66

Query: 179 LKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVM 213
             F +   D   + L ++VW+     R+  L   M
Sbjct: 67  FSFDVNERD-YQKRLLVTVWNKLSKSRDSGLLGCM 100

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 5/80 (6%)

Query: 276 LHVLIKEAKSLCP--VKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRD 333
           L V + +A++L P        D F K  LLPD+ R+ +  + + +++ +P ++ T V+  
Sbjct: 16  LTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQ--SKVKRKTQNPNFDETFVF-Q 72

Query: 334 VSLEELSERCLELTVWDHDR 353
           VS +EL  R L L+V+D DR
Sbjct: 73  VSFKELQRRTLRLSVYDVDR 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 17/119 (14%)

Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVK-SNTVDAFCKAYLLP 304
           GEL++ L ++P               + G L+V I  AK L     S   D F K  L+ 
Sbjct: 1   GELLLSLNYLP---------------SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVH 45

Query: 305 DKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGI 363
                   KT  ++ +  P +N +  ++ V  EEL    L  TV+ H+  +SN+F+G I
Sbjct: 46  GLKLIKTKKTSCMRGTIDPFYNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRI 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 31/118 (26%)

Query: 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPD---------KSKAGKRK---------- 163
            L++ V + K L   D     SDPY  + ++P          K +   RK          
Sbjct: 29  VLKVTVIEAKGLLAKDVN-GFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPA 87

Query: 164 -----TRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
                T VK  TL+PV++E   F+  +ED+    L L +W  D    +DFLG V + L
Sbjct: 88  KSIKVTEVKPQTLNPVWNE--TFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPL 139

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 9/113 (7%)

Query: 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
           G L + + + +DL P +    +SDPY +V +      + + KT+V   TL+P ++  ++F
Sbjct: 15  GRLMVVIVEGRDLKPCN-SNGKSDPYCEVSM-----GSQEHKTKVVSDTLNPKWNSSMQF 68

Query: 182 QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234
            +  +DLE   L ++V+  D F  +DFLG   + +   +  +      P+ +R
Sbjct: 69  FV--KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVA-DILKETKESKGPITKR 118

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVS 335
           L V++  A+ L  +       + K  L+         KT ++  + SP +N +  ++ V+
Sbjct: 17  LTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFK-VT 75

Query: 336 LEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMME 395
             +L    L L+V     +  ++ LG  R+ LG          +M + GKE+  W  M+ 
Sbjct: 76  SRQLDTASLSLSVMQSGGVRKSKLLG--RVVLG---------PFMYARGKELEHWNDMLS 124

Query: 396 RP 397
           +P
Sbjct: 125 KP 126

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 27/99 (27%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 264 SAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTS 322
            A+   ++  G L V+I E + L P  SN   D +C+  +      + +HKT ++  + +
Sbjct: 5   LARSQRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM-----GSQEHKTKVVSDTLN 59

Query: 323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLG 361
           P+WN ++ +    +++L +  L +TV+D D  + ++FLG
Sbjct: 60  PKWNSSMQF---FVKDLEQDVLCITVFDRDFFSPDDFLG 95

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 19/122 (15%)

Query: 276 LHVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR-- 332
           L V++ +A++L      T  D F K YLL D  + SK KT + +  T+P +N  +++   
Sbjct: 17  LTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVP 76

Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQ 392
            + L++LS   L +TV +           G   N+GH      ++    +SG  +  W Q
Sbjct: 77  AIVLQDLS---LRVTVAEST-------EDGKTPNVGH------VIIGPAASGMGLSHWNQ 120

Query: 393 MM 394
           M+
Sbjct: 121 ML 122

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVF-DEVLKFQ 182
           L++ V   +DL  +D     +D +V+V       K     T V K +L+PV+  E  +F+
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYK-----TDVVKKSLNPVWNSEWFRFE 55

Query: 183 LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
           +  E+L+   L + V   D +  ND +G+V + L
Sbjct: 56  VDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDL 89

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 277 HVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVY-RDVS 335
            V + EA+ L       +D   K  +   K       T + K +  P +N    +    S
Sbjct: 7   RVRVIEARQL---VGGNIDPVVKVEVGGQK-----KYTSVKKGTNCPFYNEYFFFNFHES 58

Query: 336 LEELSERCLELTVWDHDRLTSNEFLGGIRLNLG 368
            +EL ++ ++++V+D   L S+  +G  +L++G
Sbjct: 59  PDELFDKIIKISVYDSRSLRSDTLIGSFKLDVG 91

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 110 EVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKA-GKRKTRVKK 168
           E+  GL+YN   G L + V +  +   +    +  D YVK+ LL    +   K KT +++
Sbjct: 3   ELLLGLEYNALTGRLSVEVIKGSNFKNL-AMNKAPDTYVKLTLLNSDGQEISKSKTSIRR 61

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
               P F E   FQ+ L  L   TL  SV++     R + +G   + L +
Sbjct: 62  GQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 10/89 (11%)

Query: 138 DTKRQRSDPYVKVYLLPDKSKAGKR---KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLW 194
           D+    SDPYV    L D +  GKR   KTR    TL+P +DE   F+L +   E   + 
Sbjct: 16  DSSNGLSDPYV---TLVDTN--GKRRIAKTRTIYDTLNPRWDEE--FELEVPAGEPLWIS 68

Query: 195 LSVWHSDMFGRNDFLGEVMMSLENKVFDD 223
            +VW     G++D  G   + L+ K F D
Sbjct: 69  ATVWDRSFVGKHDLCGRASLKLDPKRFGD 97

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 273 KGSLHVLIKEAKSLCPV--KSNTVDAFCKAYLLPDKGRASKH--KTGIIKRSTSPQWNHT 328
           K +L V I E + L  +  +S T D + K  LLP+K    +H  KT +++++ +P ++ T
Sbjct: 15  KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK----EHKVKTRVLRKTRNPVYDET 70

Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLG 361
             +  +   +L +  L   V   DR + ++ +G
Sbjct: 71  FTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIG 103

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 42.2 bits (100), Expect = 5e-05
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVL 179
           G L +H+++  DL  ++    + DPYV+V L+    K    +T    +TL+PV+DEVL
Sbjct: 1   GVLRLHIRKANDLKNLEGVG-KIDPYVRV-LVNGIVKG---RTVTISNTLNPVWDEVL 53

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVS 335
           LHVL  EAK L    S T +++ K  L PDK    + KT  +  S +P ++ T  + DV+
Sbjct: 16  LHVL--EAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSF-DVN 72

Query: 336 LEELSERCLELTVW 349
             +  +R L +TVW
Sbjct: 73  ERDYQKRLL-VTVW 85

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 10/82 (12%)

Query: 143 RSDPYVKVY-LLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLEC-----RTLWLS 196
           +SDP++++     D +     +T V K+TL+PV+     F + L+ L C     R + + 
Sbjct: 20  KSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FTIPLQKL-CNGDYDRPIKIE 75

Query: 197 VWHSDMFGRNDFLGEVMMSLEN 218
           V+  D  G++D +GE   +L+ 
Sbjct: 76  VYDYDSSGKHDLIGEFETTLDE 97

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 19/37 (51%), Positives = 23/37 (62%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQ 40
          +S   KRKT VKK T++PVF+E LK   E D   S Q
Sbjct: 49 KSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQ 85

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 17/105 (16%)

Query: 122 GALEIHVKQCKDLAPVDTKRQRS---------DPYVKVYLLPDKSKAGKRKTRVKKHTLS 172
           G L+I + +  DL P D   + +         DPYV + +  D +  GK  T+ K  T S
Sbjct: 4   GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDV--DDTHIGKTSTKPK--TNS 59

Query: 173 PVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE 217
           PV++E    + T E    R L L+V+H    G +DF+    +S E
Sbjct: 60  PVWNE----EFTTEVHNGRNLELTVFHDAAIGPDDFVANCTISFE 100

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 16/25 (64%), Positives = 20/25 (80%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLK 28
          +S  GKRKT VKK TL+PVF+E L+
Sbjct: 49 KSNRGKRKTSVKKKTLNPVFNETLR 73

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 276 LHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDV 334
           L V + +A+ L P     +  A+ +           K +T    +  +P WN  +V+   
Sbjct: 2   LVVEVVDAQDLMPKDGQGSSSAYVELDFD-----GQKKRTRTKPKDLNPVWNEKLVFNVS 56

Query: 335 SLEELSERCLELTVWDHDRLT-SNEFLGGIRLN 366
               LS   LE+ V++  R      FLG +R++
Sbjct: 57  DPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRIS 89

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 12/89 (13%)

Query: 132 KDLAPVDTKRQRSDPYVKVYLLPDKSKAG--KRKTRVKKHTLSPVFDEVLKFQLTLEDLE 189
           K+L P+D     SDPYVK  L       G  K K++V   TL+P + E  +F L L D +
Sbjct: 10  KNLPPMDDNGL-SDPYVKFRL-------GNEKYKSKVCSKTLNPQWLE--QFDLHLFDDQ 59

Query: 190 CRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
            + L + VW  D   +++F+G   + L  
Sbjct: 60  SQILEIEVWDKDTGKKDEFIGRCEIDLSA 88

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ 182
           A  +H  Q K L  +D         VKV L    +K  K++T+  KH ++PV++E++ F+
Sbjct: 24  AKNLHSDQLKLLLGIDVS-------VKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE 76

Query: 183 LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE 217
           L  E L   ++ L V + D  G++  LG   + L 
Sbjct: 77  LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLH 111

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 11/86 (12%)

Query: 277 HVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVS 335
           HVL  EA+ L P  ++ T D F + +     G+    +T ++K+S  P+WN    +    
Sbjct: 5   HVL--EARDLAPKDRNGTSDPFVRVFY---NGQT--LETSVVKKSCYPRWNEVFEFE--- 54

Query: 336 LEELSERCLELTVWDHDRLTSNEFLG 361
           L E ++  L + VWD D ++ N+FLG
Sbjct: 55  LMEGADSPLSVEVWDWDLVSKNDFLG 80

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 7/97 (7%)

Query: 122  GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
            G L I ++  ++L   D +   SDP+VK++L          KT+V K TL+PV++E    
Sbjct: 1040 GYLTIMLRSGENLPSSD-ENGYSDPFVKLFLNEKSV----YKTKVVKKTLNPVWNEEFTI 1094

Query: 182  QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
            ++     +   L ++V   D   +ND LG   + L  
Sbjct: 1095 EVLNRVKD--VLTINVNDWDSGEKNDLLGTAEIDLSK 1129

Length = 1227

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L + + + K+L      +   DPY  V L  D+ +  + KT  K   L+P + E   F  
Sbjct: 2   LRLRILEAKNLPS----KGTRDPYCTVSL--DQVEVARTKTVEK---LNPFWGEEFVFDD 52

Query: 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
              D+   TL           R+  +G+V +S
Sbjct: 53  PPPDVTFFTLSFYNKDKRSKDRDIVIGKVALS 84

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 7/112 (6%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPY-VKVYLLPDKSKAGKRKTRVK 167
           G+++   +Y+     L + V + +D+   D  R  +  + V + LLP  SK  + KT+V+
Sbjct: 3   GDLDVAFEYDPSARKLTVTVIRAQDIPTKD--RGGASSWQVHLVLLP--SKKQRAKTKVQ 58

Query: 168 KHTLSPVFDEVLKF-QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
           +   +PVF+E   F ++  E+L    L   ++  +   +   +GE ++ L  
Sbjct: 59  RGP-NPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQ 109

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 19/97 (19%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L + +K    L        + D   KV       +  K+KTRV ++ L+PV++E  ++ L
Sbjct: 1   LVVSLKNLPGLKG------KGDRIAKVTF-----RGVKKKTRVLENELNPVWNETFEWPL 49

Query: 184 T--LEDLECRTLWLSVWHSDM--FGRNDFLGEVMMSL 216
               +  E     L +   D    GRN  +G   +SL
Sbjct: 50  AGSPDPDE----SLEIVVKDYEKVGRNRLIGSATVSL 82

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 6/41 (14%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQ 44
          +SK+ +RKT VKK  L+PVFDE        +F VS ++ K+
Sbjct: 49 KSKSTRRKTSVKKDNLNPVFDETF------EFPVSLEELKR 83

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 13/104 (12%)

Query: 276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT------- 328
           L V + E   L  +K+ T D +    L+    +    +T + K++ +PQ++         
Sbjct: 2   LSVRVIECSDL-ALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTI 60

Query: 329 -----VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
                    ++  E+  +  L + +W       + FLG +R+ L
Sbjct: 61  DSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPL 104

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 26/116 (22%)

Query: 126 IHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF---- 181
           +HV   + L+  D+    +DPYV +     K +    ++ V+K TLSP FD    F    
Sbjct: 7   VHVHSAEGLSKQDSGG-GADPYVII-----KCEGESVRSPVQKDTLSPEFDTQAIFYRKK 60

Query: 182 ---QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER 234
               + ++          VW+S++    +FLG+  +S +    D  + +  PL++R
Sbjct: 61  PRSPIKIQ----------VWNSNLLCD-EFLGQATLSAD--PNDSQTLRTLPLRKR 103

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRV-KKHTLSPVFDEVL 179
           G L + V + ++L P   K  + DPY  + +       G  +KT+   +    P +DE L
Sbjct: 1   GTLVVVVLKARNL-PNKRKLDKQDPYCVLRI------GGVTKKTKTDFRGGQHPEWDEEL 53

Query: 180 KFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ----ERS 235
           +F++T +      L ++V+  D   + D +G+  + L   + +      Y L        
Sbjct: 54  RFEITEDKK--PILKVAVFDDD-KRKPDLIGDTEVDLSPALKEGEFDDWYELTLKGRYAG 110

Query: 236 EILDEL 241
           E+  EL
Sbjct: 111 EVYLEL 116

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176059 cd08677, C2A_Synaptotagmin-13, C2 domain

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 163 KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
           +T +KK  L   ++E L F L  E+    TL L++   D F R+  LGE+ + L +
Sbjct: 50  QTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLAD 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This CD contains the first C2 repeat, C2A, and has a type-I topology. Length = 118

>gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 145 DPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFG 204
           D Y K+Y++   +   K+KT++ +    P ++E   F LT+ +L    L + V   DM  
Sbjct: 498 DFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELA--LLRIEVREYDMSE 555

Query: 205 RNDFLGE 211
           ++DF G+
Sbjct: 556 KDDFGGQ 562

Length = 599

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 2/22 (9%)

Query: 8  GKR--KTRVKKHTLSPVFDEVL 27
          G+R  +T  ++HTL+PVF+E L
Sbjct: 35 GRRVFRTSWRRHTLNPVFNERL 56

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 16/105 (15%)

Query: 295 DAFCKAYLLPDKGRA-SKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR 353
           D + K  LL   G+  SK KT I +    P++  T V++ V+L +LSE  L  +V++  +
Sbjct: 37  DTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-VALFQLSEVTLMFSVYNKRK 95

Query: 354 LTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGK-EILLWQQMMERP 397
           +   E +G   L L             +SSG+ E   W +M E  
Sbjct: 96  MKRKEMIGWFSLGL-------------NSSGEEEEEHWNEMKESK 127

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 160 GKRK--TRVKKHTLSPVFDEVLKF---QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMM 214
           GK K  T VK+ T SPV+ E   F    L   +    TL L+V H ++ G + FLG+V +
Sbjct: 29  GKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSI 88

Query: 215 SLENKVFDDPSPK 227
            L +   D    +
Sbjct: 89  PLNDLDEDKGRRR 101

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 274 GSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRD 333
           G L V + EAK L   K  +       Y +   G A + KT  I  + +P+WN    + +
Sbjct: 1   GVLRVHVVEAKDLAA-KDRSGKGKSDPYAILSVG-AQRFKTQTIPNTLNPKWN---YWCE 55

Query: 334 VSLEELSERCLELTVWDHDRLTSNEFLGG 362
             +     + L+L +WD DR    ++LG 
Sbjct: 56  FPIFSAQNQLLKLILWDKDRFAGKDYLGE 84

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 274 GSLHVLIKEAKSLCPVKSNTV--DAFCKAYLLPDKGRASK--HKTGIIKRSTSPQWNHTV 329
           G L V I  A  L      T   D +  A       +  K  + T II++  +P W  T 
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASF----AKFGKPLYSTRIIRKDLNPVWEETW 56

Query: 330 VYRDVSLEELSERCLELTVWDHDRLTSNEFLG 361
                  E  +   L   +WD DR T+++ LG
Sbjct: 57  FVLVTPDEVKAGERLSCRLWDSDRFTADDRLG 88

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	419
KOG1028|consensus	421		100.0
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	100.0
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	100.0
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	100.0
KOG1028|consensus	421		99.98
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.97
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.97
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.96
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.96
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.96
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.96
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.96
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.95
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.95
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.95
KOG1013|consensus	362		99.95
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.95
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.95
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.95
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.94
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.94
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.94
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.94
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.94
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.94
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.94
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.93
KOG2059|consensus	800		99.93
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.93
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.93
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.92
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.92
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.92
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.92
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.92
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.92
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.92
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.92
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.92
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.91
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.91
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.91
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.91
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.91
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.91
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.9
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.9
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.9
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.9
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.9
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.9
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.89
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.89
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.89
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.89
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.89
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.89
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.89
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.88
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.88
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.88
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.88
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.88
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.88
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.88
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.88
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.87
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.87
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.85
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.85
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.85
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.85
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.85
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.84
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.84
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.84
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.84
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.83
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.83
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.83
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.83
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.83
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.83
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.83
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.82
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.82
KOG1328|consensus	1103		99.82
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.82
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.82
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.82
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.82
KOG0696|consensus	683		99.81
KOG0696|consensus	683		99.81
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.81
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.81
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.81
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.8
KOG2059|consensus	800		99.8
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.8
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.79
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.79
KOG1013|consensus	362		99.79
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.79
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.79
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.79
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.78
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.78
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.78
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.78
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.78
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.78
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.77
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.77
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.77
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.77
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.77
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.76
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.76
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.76
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.76
KOG1030|consensus	168		99.76
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.76
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.75
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.75
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.75
KOG1030|consensus	168		99.75
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.75
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.75
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.74
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.74
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.74
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.74
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.73
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.73
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.73
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.73
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.73
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.72
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.72
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.72
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.72
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.72
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.72
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.72
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.71
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.71
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.71
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.71
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.71
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.7
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.7
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.7
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.7
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.7
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.69
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.69
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.69
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.69
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.69
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.69
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.69
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.68
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.68
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.68
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.68
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.67
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.67
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.67
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.67
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.66
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.66
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.65
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.65
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.65
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.65
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.64
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.64
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.64
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.63
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.63
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.63
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.63
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.62
KOG1326|consensus	1105		99.62
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.62
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.62
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.61
PLN03008	868	Phospholipase D delta	99.6
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.59
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.59
KOG1011|consensus	1283		99.58
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.57
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.56
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.56
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.55
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.53
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.53
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.52
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.52
KOG0905|consensus	1639		99.49
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.47
KOG1326|consensus	1105		99.44
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.44
PLN03008	868	Phospholipase D delta	99.44
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.39
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.36
KOG0905|consensus	1639		99.34
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.34
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.33
KOG1328|consensus	1103		99.32
PLN02223	537	phosphoinositide phospholipase C	99.3
KOG1327|consensus	529		99.28
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.25
PLN02223	537	phosphoinositide phospholipase C	99.23
PLN02230	598	phosphoinositide phospholipase C 4	99.21
PLN02952	599	phosphoinositide phospholipase C	99.19
PLN02222	581	phosphoinositide phospholipase C 2	99.19
PLN02952	599	phosphoinositide phospholipase C	99.17
KOG1327|consensus	529		99.16
KOG1031|consensus	1169		99.14
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	99.13
KOG1011|consensus	1283		99.12
PLN02228	567	Phosphoinositide phospholipase C	99.11
KOG0169|consensus	746		99.11
KOG1031|consensus	1169		99.11
PLN02230	598	phosphoinositide phospholipase C 4	99.09
PLN02270	808	phospholipase D alpha	99.09
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	99.08
KOG1264|consensus	1267		99.08
PLN02222	581	phosphoinositide phospholipase C 2	99.05
PLN02228	567	Phosphoinositide phospholipase C	99.04
PLN02270	808	phospholipase D alpha	99.01
KOG0169|consensus	746		98.95
KOG1264|consensus	1267		98.95
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.86
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.77
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.73
KOG2060|consensus	405		98.72
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.5
KOG2060|consensus	405		98.5
PLN02352	758	phospholipase D epsilon	98.39
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	98.37
PLN02352	758	phospholipase D epsilon	98.22
KOG3837|consensus	523		97.78
PLN02964	644	phosphatidylserine decarboxylase	97.62
PLN02964	644	phosphatidylserine decarboxylase	97.61
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.51
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.47
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.41
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.35
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.31
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.27
KOG1265|consensus	1189		97.1
KOG1265|consensus	1189		97.04
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.93
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.91
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.9
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.89
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.89
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.88
PF15627	156	CEP76-C2: CEP76 C2 domain	96.83
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.63
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.58
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.21
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	96.11
KOG3837|consensus	523		95.99
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	95.95
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	95.84
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	95.8
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	95.79
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	94.98
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	94.93
PF15627	156	CEP76-C2: CEP76 C2 domain	94.89
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	94.23
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	94.13
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	94.05
KOG1452|consensus	442		92.31
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	92.06
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	90.25
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	89.59
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	89.19
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	88.5
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	88.24
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	87.98
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	87.24
KOG1452|consensus	442		84.68
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	81.43

>KOG1028|consensus

Probab=100.00  E-value=3.6e-51  Score=391.83  Aligned_cols=272  Identities=41%  Similarity=0.653  Sum_probs=251.5

Q ss_pred             ceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEc
Q psy12482        104 SVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL  183 (419)
Q Consensus       104 ~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v  183 (419)
                      .....|+|.+++.|+.....|.|+|++|++|+.++.. |.+||||+++++|+.  ..+.+|+++++|+||+|||+|.|.|
T Consensus       149 ~~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~-g~sdpyVK~~llPdk--~~k~kT~v~r~tlnP~fnEtf~f~v  225 (421)
T KOG1028|consen  149 NVKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRG-GTSDPYVKVYLLPDK--KGKFKTRVHRKTLNPVFNETFRFEV  225 (421)
T ss_pred             cceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCC-CCCCCeeEEEEcCCC--CCcceeeeeecCcCCccccceEeec
Confidence            4567899999999999999999999999999999943 789999999999988  4489999999999999999999999


Q ss_pred             ccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCccc
Q psy12482        184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLS  263 (419)
Q Consensus       184 ~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~  263 (419)
                      +.+++....|.++|||+|.++++++||++.++|..+........|.+|.+.......   ..|+|.++++|.|.      
T Consensus       226 ~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~---~~gel~~sL~Y~p~------  296 (421)
T KOG1028|consen  226 PYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEE---LAGELLLSLCYLPT------  296 (421)
T ss_pred             CHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCccc---ccceEEEEEEeecC------
Confidence            999999999999999999999999999999999998888778899999887554332   22899999999998      


Q ss_pred             cccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccC
Q psy12482        264 SAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSER  342 (419)
Q Consensus       264 ~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~  342 (419)
                               .|+|.|.|++|+||+.++.+ .+||||++.+.......++++|.+++++.||+|||+|.|. ++.+.+++.
T Consensus       297 ---------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~-vp~~~l~~~  366 (421)
T KOG1028|consen  297 ---------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFD-VPPEQLAEV  366 (421)
T ss_pred             ---------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEe-CCHHHhhee
Confidence                     79999999999999999998 9999999999988888899999999999999999999995 999999999


Q ss_pred             eEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCC
Q psy12482        343 CLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSS  410 (419)
Q Consensus       343 ~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~  410 (419)
                      +|.|+|||++.++++++||++.++..             ..|.+..||.+|+++|++|+++||.|+++
T Consensus       367 ~l~l~V~d~d~~~~~~~iG~~~lG~~-------------~~~~~~~hW~~m~~~p~~pv~~wh~l~~~  421 (421)
T KOG1028|consen  367 SLELTVWDHDTLGSNDLIGRCILGSD-------------STGEEVRHWQEMLNSPRKPVAQWHSLRSS  421 (421)
T ss_pred             EEEEEEEEcccccccceeeEEEecCC-------------CCchHHHHHHHHHhCccCceeeeEecccC
Confidence            99999999999999999999999873             47888999999999999999999999874

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=100.00  E-value=1.2e-33  Score=229.61  Aligned_cols=134  Identities=25%  Similarity=0.435  Sum_probs=125.4

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCC--C-CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKS--N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTS  322 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~--~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n  322 (419)
                      |+|.++++|.|.               .++|.|+|++|+||+.++.  . .+||||+|.+.+++.+..++||++++++.|
T Consensus         2 Gel~~sL~Y~~~---------------~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~n   66 (138)
T cd08407           2 GEVLLSISYLPA---------------ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKIN   66 (138)
T ss_pred             CEEEEEEEEeCC---------------CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCC
Confidence            999999999998               7999999999999999883  2 689999999998877778899999999999


Q ss_pred             CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEE
Q psy12482        323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVE  402 (419)
Q Consensus       323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~  402 (419)
                      |+|||.|.|. ++.+++.+.+|.|+|||++.++++++||++.|++             ...|.+.+||.+|+.+|+++|+
T Consensus        67 PvfNE~f~F~-v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~-------------~~~g~~~~hW~~ml~~p~~~va  132 (138)
T cd08407          67 PVWNEMIMFE-LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGL-------------HTSGTERQHWEEMLDNPRRQIA  132 (138)
T ss_pred             CccccEEEEE-CCHHHhCccEEEEEEEeCCCCcCcceeceEEecC-------------cCCCcHHHHHHHHHhCCCCchh
Confidence            9999999996 9999999999999999999999999999999998             3578899999999999999999


Q ss_pred             eeeecc
Q psy12482        403 SCIPLR  408 (419)
Q Consensus       403 ~w~~l~  408 (419)
                      +||.|+
T Consensus       133 ~WH~L~  138 (138)
T cd08407         133 MWHQLH  138 (138)
T ss_pred             EEEECC
Confidence            999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=100.00  E-value=2.2e-32  Score=218.29  Aligned_cols=133  Identities=23%  Similarity=0.396  Sum_probs=119.7

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCC-CC
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST-SP  323 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~-nP  323 (419)
                      .+|.++++|.|.               .++|.|+|++|+||+++... ..||||||++.+.+.+..++||.++++|+ ||
T Consensus         1 ~el~~sL~Y~p~---------------~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P   65 (135)
T cd08692           1 AELQLGTCFQAV---------------NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQV   65 (135)
T ss_pred             CeEEEEeeecCc---------------CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCc
Confidence            379999999999               89999999999999998655 78999999999888888899999999995 69


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES  403 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~  403 (419)
                      +|||+|.|+ ++.++ .+.++.|+|||++..+++++||++.|+.+.            ..|.+.+||.+|+.+|+++|++
T Consensus        66 ~fNEsF~Fd-v~~~~-~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~------------~~~~~~~hW~~m~~~pr~~ia~  131 (135)
T cd08692          66 KWGETMIFP-VTQQE-HGIQFLIKLYSRSSVRRKHFLGQVWISSDS------------SSSEAVEQWKDTIANPEKVVTK  131 (135)
T ss_pred             eecceEEEe-CCchh-heeEEEEEEEeCCCCcCCceEEEEEECCcc------------CCchhhhhHHHHHhCCCCeeeE
Confidence            999999996 88764 467899999999999999999999999843            3566799999999999999999


Q ss_pred             eeec
Q psy12482        404 CIPL  407 (419)
Q Consensus       404 w~~l  407 (419)
                      ||.|
T Consensus       132 WH~L  135 (135)
T cd08692         132 WHSL  135 (135)
T ss_pred             eecC
Confidence            9987

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=100.00  E-value=3.3e-32  Score=221.49  Aligned_cols=134  Identities=28%  Similarity=0.457  Sum_probs=124.8

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ  324 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~  324 (419)
                      |+|.++++|.|.               .++|.|+|++|+||+..+.+ .+||||+|.+.+++....+++|+++++++||+
T Consensus         2 G~i~~sL~Y~~~---------------~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~   66 (136)
T cd08406           2 GEILLSLSYLPT---------------AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPI   66 (136)
T ss_pred             cEEEEEEEEcCC---------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCe
Confidence            999999999998               78999999999999998877 89999999998876666688999999999999


Q ss_pred             cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEee
Q psy12482        325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESC  404 (419)
Q Consensus       325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w  404 (419)
                      |||+|.|. ++..++.+.+|.|+|||++.++++++||++.|+.             ...|.+.+||.+|+.+|+.+|++|
T Consensus        67 ~nE~f~F~-v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~-------------~~~g~~~~hW~~ml~~~~~~v~~W  132 (136)
T cd08406          67 FNEAMIFS-VPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGP-------------AASGMGLSHWNQMLASLRKPVAMW  132 (136)
T ss_pred             eceeEEEE-CCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECC-------------CCCChhHHHHHHHHHCCCCeeeEe
Confidence            99999996 9988999999999999999999999999999976             357889999999999999999999


Q ss_pred             eecc
Q psy12482        405 IPLR  408 (419)
Q Consensus       405 ~~l~  408 (419)
                      |.|+
T Consensus       133 H~l~  136 (136)
T cd08406         133 HPLR  136 (136)
T ss_pred             eecC
Confidence            9985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>KOG1028|consensus

Probab=99.98  E-value=1.9e-32  Score=262.84  Aligned_cols=207  Identities=31%  Similarity=0.416  Sum_probs=167.4

Q ss_pred             cccCcceeeecccCCCCcccceeeeceeeceeeccccccccCCCCcCcccccccCccCCcccccccccccccCCcccccc
Q psy12482          5 SKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNKSLLG   84 (419)
Q Consensus         5 ~k~~k~kT~v~~~t~nP~wnE~f~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~   84 (419)
                      +|++|+||+|+++|+||+|||+|.|. +....+....+. +.|+|+|.|++++++|++.+.+...+....  ...|..+.
T Consensus       199 dk~~k~kT~v~r~tlnP~fnEtf~f~-v~~~~l~~~~L~-l~V~~~drfsr~~~iGev~~~l~~~~~~~~--~~~w~~l~  274 (421)
T KOG1028|consen  199 DKKGKFKTRVHRKTLNPVFNETFRFE-VPYEELSNRVLH-LSVYDFDRFSRHDFIGEVILPLGEVDLLST--TLFWKDLQ  274 (421)
T ss_pred             CCCCcceeeeeecCcCCccccceEee-cCHHHhccCEEE-EEEEecCCcccccEEEEEEecCcccccccc--ceeeeccc
Confidence            34899999999999999999999996 333344444444 779999999999999999887776666542  11122221


Q ss_pred             cccCCccccccCCCCCCCCceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeec
Q psy12482         85 ARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKT  164 (419)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT  164 (419)
                      .....        .      ....|+|.++|+|.+..++|+|.|++|++|..++.. +.+||||++++.+++++..++||
T Consensus       275 ~~~~~--------~------~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~-~~~d~~Vk~~l~~~~~~~~kkkT  339 (421)
T KOG1028|consen  275 PSSTD--------S------EELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVG-GLSDPYVKVTLLDGDKRLSKKKT  339 (421)
T ss_pred             cccCC--------c------ccccceEEEEEEeecCCCeEEEEEEEecCCCcccCC-CCCCccEEEEEecCCceeeeeee
Confidence            11100        0      011289999999999999999999999999999987 89999999999988888889999


Q ss_pred             ccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482        165 RVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ  232 (419)
Q Consensus       165 ~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~  232 (419)
                      .+++++.||+|||+|.|.|+.+.+.+..|.|+|||++.++++++||++.++...  ...+..+|.++.
T Consensus       340 ~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~  405 (421)
T KOG1028|consen  340 SVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEML  405 (421)
T ss_pred             ecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998875  233345666543

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.97  E-value=6.2e-30  Score=215.01  Aligned_cols=161  Identities=60%  Similarity=1.069  Sum_probs=141.6

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|.++++|.|...+...   .......+.|.|+|++|+||+..+.. .+||||+|.+.+...+..+++|++++++.||
T Consensus         1 ~G~l~~~l~y~~~~~~~~~---~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP   77 (162)
T cd04020           1 RGELKVALKYVPPESEGAL---KSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNP   77 (162)
T ss_pred             CceEEEEEEecCccccccc---cccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCC
Confidence            4999999999996533222   11333479999999999999999877 8999999999876666778999999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES  403 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~  403 (419)
                      +|||.|.|..++..++.+..|.|+|||++.++++++||++.|+++.+...+....|+++.|.++.||++|+.+|+.+|.+
T Consensus        78 ~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~  157 (162)
T cd04020          78 VWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEG  157 (162)
T ss_pred             CCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEE
Confidence            99999999745566777778999999999999999999999999999888889999999999999999999999999999


Q ss_pred             eeecc
Q psy12482        404 CIPLR  408 (419)
Q Consensus       404 w~~l~  408 (419)
                      ..|||
T Consensus       158 ~~~~~  162 (162)
T cd04020         158 TLPLR  162 (162)
T ss_pred             EEecC
Confidence            99996

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.97  E-value=3.2e-30  Score=211.38  Aligned_cols=136  Identities=22%  Similarity=0.418  Sum_probs=124.0

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ  324 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~  324 (419)
                      .|+|.+++.|.|.               .++|.|+|++|+||+..+.+.+||||+|.+.+......+++|++++++.||+
T Consensus         1 ~G~i~~sl~y~~~---------------~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~   65 (137)
T cd08409           1 LGDIQISLTYNPT---------------LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPS   65 (137)
T ss_pred             CcEEEEEEEECCC---------------CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCc
Confidence            3999999999998               7999999999999999884489999999998765555678999999999999


Q ss_pred             cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEee
Q psy12482        325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESC  404 (419)
Q Consensus       325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w  404 (419)
                      |||.|.|. ++.+++.+.+|.|+|||++..+++++||++.|+...           ..+|.+.+||.+|+.+|+++|++|
T Consensus        66 fnE~F~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~-----------~~~~~~~~hW~~~~~~p~~~i~~W  133 (137)
T cd08409          66 FNESFSFK-VTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFM-----------YARGKELEHWNDMLSKPKELIKRW  133 (137)
T ss_pred             ccceEEEE-CCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcc-----------cCCChHHHHHHHHHhCCCCceeEE
Confidence            99999996 988899888999999999999999999999998754           467899999999999999999999


Q ss_pred             eec
Q psy12482        405 IPL  407 (419)
Q Consensus       405 ~~l  407 (419)
                      |.|
T Consensus       134 H~l  136 (137)
T cd08409         134 HAL  136 (137)
T ss_pred             EeC
Confidence            997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.96  E-value=3.7e-29  Score=204.65  Aligned_cols=133  Identities=29%  Similarity=0.450  Sum_probs=120.9

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCC-CCcceeecccccCCCCC
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDK-GRASKHKTGIIKRSTSP  323 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~-~~~~~~~T~~~~~t~nP  323 (419)
                      |+|.+++.|.+.               .++|.|+|++|+||+.++.. .+||||++.+.+.. ....+++|++++++.||
T Consensus         2 ~ei~~sL~Y~~~---------------~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nP   66 (138)
T cd08408           2 PELLLGLEYNAL---------------TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDP   66 (138)
T ss_pred             CeEEEEeEEcCC---------------CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCC
Confidence            899999999988               79999999999999998877 89999999998653 33457899999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCc-hhHHHHHHHHhCCCceEE
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSG-KEILLWQQMMERPNFWVE  402 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g-~~~~~W~~l~~~p~~~i~  402 (419)
                      +|||+|.|+ ++.+++.+.+|.|+|||++.++++++||++.|++..             .| .+.+||++|+.+|+++|+
T Consensus        67 vfnEtF~f~-i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~-------------~~~~~~~hW~~~l~~~~~~v~  132 (138)
T cd08408          67 EFKETFVFQ-VALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNS-------------SGEEEEEHWNEMKESKGQQVC  132 (138)
T ss_pred             cEeeeEEEE-CCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcC-------------CCchHHHHHHHHHhCCCCEEe
Confidence            999999997 998899999999999999999999999999998843             44 578999999999999999


Q ss_pred             eeeec
Q psy12482        403 SCIPL  407 (419)
Q Consensus       403 ~w~~l  407 (419)
                      +||.|
T Consensus       133 ~WH~l  137 (138)
T cd08408         133 RWHTL  137 (138)
T ss_pred             Eeeec
Confidence            99998

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.96  E-value=7.3e-29  Score=203.08  Aligned_cols=134  Identities=30%  Similarity=0.465  Sum_probs=120.2

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ  324 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~  324 (419)
                      |+|.+++.|.|.               .+.|.|+|++|+||+.++.. .+||||+|.+.++.....+++|++++++.||+
T Consensus         1 G~i~~~l~y~~~---------------~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~   65 (135)
T cd08410           1 GELLLSLNYLPS---------------AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPF   65 (135)
T ss_pred             CcEEEEEEECCC---------------CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCc
Confidence            899999999998               79999999999999999877 89999999986654445678999999999999


Q ss_pred             cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEee
Q psy12482        325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESC  404 (419)
Q Consensus       325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w  404 (419)
                      |||+|.|. ++..++++..|.|+|||++..+++++||++.|+..            ...+.+.+||..|+.+|+.+|++|
T Consensus        66 wnE~F~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~------------~~~~~~~~~W~~l~~~~~~~~~~w  132 (135)
T cd08410          66 YNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQY------------SSGPSETNHWRRMLNSQRTAVEQW  132 (135)
T ss_pred             cceeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCc------------cCCchHHHHHHHHHhCCCCEeeEe
Confidence            99999996 88888888889999999999999999999998763            344557899999999999999999


Q ss_pred             eec
Q psy12482        405 IPL  407 (419)
Q Consensus       405 ~~l  407 (419)
                      |.|
T Consensus       133 h~l  135 (135)
T cd08410         133 HSL  135 (135)
T ss_pred             ecC
Confidence            987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.96  E-value=1.1e-28  Score=202.85  Aligned_cols=135  Identities=30%  Similarity=0.515  Sum_probs=122.7

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|.+++.|.|.               .+.|.|.|++|++|+.++.. .+||||+|.+.+.+....+++|.+++++.||
T Consensus         1 ~G~l~~~l~y~~~---------------~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP   65 (136)
T cd08402           1 LGDICFSLRYVPT---------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNP   65 (136)
T ss_pred             CcEEEEEeEEcCC---------------CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCC
Confidence            4999999999998               79999999999999998887 8999999999765555567899999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES  403 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~  403 (419)
                      +|||.|.|+ ++..+++...|.|+|||++.++++++||++.|++.             ..|.+.+||.+|+.+|++++++
T Consensus        66 ~wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~-------------~~~~~~~~W~~~~~~~~~~~~~  131 (136)
T cd08402          66 YYNESFSFE-VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCN-------------ATGAELRHWSDMLASPRRPIAQ  131 (136)
T ss_pred             cccceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCc-------------cCChHHHHHHHHHhCCCCeeeE
Confidence            999999997 88777777789999999999999999999999984             3578899999999999999999


Q ss_pred             eeecc
Q psy12482        404 CIPLR  408 (419)
Q Consensus       404 w~~l~  408 (419)
                      ||.|+
T Consensus       132 wh~~~  136 (136)
T cd08402         132 WHTLQ  136 (136)
T ss_pred             EEEcC
Confidence            99985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.96  E-value=2.7e-28  Score=200.57  Aligned_cols=135  Identities=33%  Similarity=0.568  Sum_probs=122.0

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|.++++|.+.               .+.|.|+|++|+||+.++.. .+||||+|.+.+.+....+++|++++++.||
T Consensus         1 ~G~l~~sl~y~~~---------------~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P   65 (136)
T cd08405           1 RGELLLSLCYNPT---------------ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNP   65 (136)
T ss_pred             CcEEEEEEEEcCC---------------CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCC
Confidence            4999999999988               79999999999999998877 8999999999765444567899999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES  403 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~  403 (419)
                      +|||.|.|. ++.+++.+..|.|+|||++.++++++||++.|++..             .|.+.+||.+|+.+|+++|++
T Consensus        66 ~wne~F~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~-------------~~~~~~~w~~~~~~~~~~~~~  131 (136)
T cd08405          66 VFNESFIFN-IPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKS-------------GGLELKHWKDMLSKPRQPVAQ  131 (136)
T ss_pred             cccceEEEe-CCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCcc-------------CCchHHHHHHHHhCCCCchhE
Confidence            999999996 877777777899999999999999999999999965             378899999999999999999


Q ss_pred             eeecc
Q psy12482        404 CIPLR  408 (419)
Q Consensus       404 w~~l~  408 (419)
                      ||.|.
T Consensus       132 wh~l~  136 (136)
T cd08405         132 WHRLK  136 (136)
T ss_pred             EEecC
Confidence            99984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.96  E-value=2.3e-28  Score=190.56  Aligned_cols=118  Identities=21%  Similarity=0.338  Sum_probs=107.6

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL  188 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l  188 (419)
                      |+|+++|+|++..+.|+|+|++|++|+ .  . |.+||||++++.++.+ ..+++|+++++|+||+|||+|.|.|+.+++
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~-g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l   75 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENIS-V--D-AGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEES   75 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCC-C--C-CCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHh
Confidence            589999999999999999999999999 3  2 5689999999987544 347899999999999999999999999999


Q ss_pred             cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecC
Q psy12482        189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPL  231 (419)
Q Consensus       189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L  231 (419)
                      .+.+|.|+|||+|.++++++||++.++++++....+..+|.+|
T Consensus        76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             CCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            9999999999999999999999999999998777788889765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.95  E-value=7.5e-28  Score=197.29  Aligned_cols=132  Identities=31%  Similarity=0.626  Sum_probs=120.1

Q ss_pred             ceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCcc
Q psy12482        247 ELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW  325 (419)
Q Consensus       247 ~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~w  325 (419)
                      .|+|++.|.+.               .+.|.|+|++|+||++++.. .+||||+|.+.++.....+++|++++++.||+|
T Consensus         1 ~i~~~l~y~~~---------------~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~w   65 (133)
T cd08384           1 KILVSLMYNTQ---------------RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEF   65 (133)
T ss_pred             CEEEEEEEcCC---------------CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCc
Confidence            47899999988               79999999999999999887 899999999987655667789999999999999


Q ss_pred             ccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeee
Q psy12482        326 NHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCI  405 (419)
Q Consensus       326 ne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~  405 (419)
                      ||+|.|+ ++..++....|.|+|||++..+++++||++.|+++             ..|.+..||++|+.+|+++|++||
T Consensus        66 ne~f~f~-~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~-------------~~~~~~~~W~~~l~~~~~~~~~wh  131 (133)
T cd08384          66 NEEFFYD-IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN-------------AKGERLRHWLDCLKNPDKKIEAWH  131 (133)
T ss_pred             ccEEEEE-CCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecC-------------CCCchHHHHHHHHhCCCCChheee
Confidence            9999996 87777777889999999999999999999999985             367788999999999999999999


Q ss_pred             ec
Q psy12482        406 PL  407 (419)
Q Consensus       406 ~l  407 (419)
                      .|
T Consensus       132 ~l  133 (133)
T cd08384         132 TL  133 (133)
T ss_pred             cC
Confidence            87

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.95  E-value=1.1e-27  Score=196.43  Aligned_cols=133  Identities=28%  Similarity=0.471  Sum_probs=120.5

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ  324 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~  324 (419)
                      |+|.+++.|.+.               .+.|+|+|++|++|++++.. .+||||+|.+.+.+....+++|.+++++.||+
T Consensus         1 g~l~~~~~y~~~---------------~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~   65 (134)
T cd08403           1 GELMFSLCYLPT---------------AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPT   65 (134)
T ss_pred             CeEEEEEEEcCC---------------CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCc
Confidence            899999999998               79999999999999999987 89999999997655556678999999999999


Q ss_pred             cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEee
Q psy12482        325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESC  404 (419)
Q Consensus       325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w  404 (419)
                      |||.|.|. ++...+....|.|+|||++.++++++||++.|++.             ..|.+..||.+|+.+|++++++|
T Consensus        66 wne~f~f~-i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~-------------~~~~~~~~w~~~~~~~~~~~~~w  131 (134)
T cd08403          66 YNEALVFD-VPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN-------------ADGQGREHWNEMLANPRKPIAQW  131 (134)
T ss_pred             ccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC-------------CCCchHHHHHHHHHCCCCeeeEe
Confidence            99999996 87777777779999999999999999999999874             45677899999999999999999


Q ss_pred             eec
Q psy12482        405 IPL  407 (419)
Q Consensus       405 ~~l  407 (419)
                      |.|
T Consensus       132 h~~  134 (134)
T cd08403         132 HQL  134 (134)
T ss_pred             ecC
Confidence            987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.95  E-value=1.1e-26  Score=234.06  Aligned_cols=244  Identities=23%  Similarity=0.298  Sum_probs=183.0

Q ss_pred             ccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEE
Q psy12482        119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVW  198 (419)
Q Consensus       119 ~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~  198 (419)
                      ...|.++|.|..|.+|...... +.+|||++|.+..    ..+++|-....+.||+||+.....+..   ....|.+.++
T Consensus       708 ~pIg~irv~v~~andl~n~i~g-~~~dPya~v~~n~----~~k~rti~~~~~~npiw~~i~Yv~v~s---k~~r~~l~~~  779 (1227)
T COG5038         708 TPIGAIRVSVRKANDLRNEIPG-GKSDPYATVLVNN----LVKYRTIYGSSTLNPIWNEILYVPVTS---KNQRLTLECM  779 (1227)
T ss_pred             CccceEEEEeehhhcccccccC-cccccceEEEecc----eeEEEEecccCccccceeeeEEEEecC---CccEEeeeee
Confidence            3678999999999999977665 8999999999953    457899999999999999987777644   2346999999


Q ss_pred             ecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhh----hhhccccceEEEEEEeCCCCCccccc---------
Q psy12482        199 HSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILD----ELICSKGELIIGLKFVPPEDSSLSSA---------  265 (419)
Q Consensus       199 d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~----~~~~~~G~l~l~l~~~~~~~~~~~~~---------  265 (419)
                      ++...+.|..||++.+++.++....+......-........    .....+|.+.+.+.|.|........+         
T Consensus       780 ~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~  859 (1227)
T COG5038         780 DYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSS  859 (1227)
T ss_pred             cchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhhhh
Confidence            99999999999999999998755333322221111111000    01345577777777766533210000         


Q ss_pred             --------------------------------------------------------------------------------
Q psy12482        266 --------------------------------------------------------------------------------  265 (419)
Q Consensus       266 --------------------------------------------------------------------------------  265 (419)
                                                                                                      
T Consensus       860 e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd  939 (1227)
T COG5038         860 EKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDD  939 (1227)
T ss_pred             HHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecC
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy12482        266 --------------------------------------------------------------------------------  265 (419)
Q Consensus       266 --------------------------------------------------------------------------------  265 (419)
                                                                                                      
T Consensus       940 ~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v 1019 (1227)
T COG5038         940 ASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLV 1019 (1227)
T ss_pred             CCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEE
Confidence                                                                                            


Q ss_pred             ------------cccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEc
Q psy12482        266 ------------KKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR  332 (419)
Q Consensus       266 ------------~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~  332 (419)
                                  ....-...|.|.|.+..|.||+..+.+ .+||||++.+    +..+.++|+++++|+||+|||.+..+
T Consensus      1020 ~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~l----n~k~vyktkv~KktlNPvwNEe~~i~ 1095 (1227)
T COG5038        1020 QVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFL----NEKSVYKTKVVKKTLNPVWNEEFTIE 1095 (1227)
T ss_pred             EEEEeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEe----cceecccccchhccCCCCccccceEe
Confidence                        000112378999999999999999999 8999999999    66668999999999999999999875


Q ss_pred             ccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCcee
Q psy12482        333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLV  377 (419)
Q Consensus       333 ~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~  377 (419)
                       |.  .-....++|.|+|||...+++.||.+.|+|..+..++...
T Consensus      1096 -v~--~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n 1137 (1227)
T COG5038        1096 -VL--NRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTN 1137 (1227)
T ss_pred             -ee--ccccceEEEEEeecccCCCccccccccccHhhcCcCCccc
Confidence             43  3334669999999999999999999999999876555443

>KOG1013|consensus

Probab=99.95  E-value=2.8e-29  Score=220.86  Aligned_cols=276  Identities=25%  Similarity=0.342  Sum_probs=239.9

Q ss_pred             eeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cc
Q psy12482        106 IVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LT  184 (419)
Q Consensus       106 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~  184 (419)
                      ...|.+.+.+.|+.....+..+|.+|++|.+++.+ +..|||++..+++...+..+.+|++..+++||.|||+-.+. +.
T Consensus        77 t~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~-~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~  155 (362)
T KOG1013|consen   77 TTLGALEFELLYDSESRMLDTTLDRAKGLKPMDIN-GLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGIT  155 (362)
T ss_pred             hhccchhhhhhhhhhhhhcceeechhcccchhhhh-hhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccc
Confidence            34799999999999999999999999999999998 99999999999998888888999999999999999988777 55


Q ss_pred             cCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCC--CceecCccc-cchhhhhhccccceEEEEEEeCCCCCc
Q psy12482        185 LEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPS--PKCYPLQER-SEILDELICSKGELIIGLKFVPPEDSS  261 (419)
Q Consensus       185 ~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~--~~w~~L~~~-~~~~~~~~~~~G~l~l~l~~~~~~~~~  261 (419)
                      .+......+++.|+|.+.+..++++|+..+++..+...+..  ..|+.-.-+ .......-..+|+|.+++.|...    
T Consensus       156 ~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~----  231 (362)
T KOG1013|consen  156 DDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSST----  231 (362)
T ss_pred             cchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcC----
Confidence            66666678899999999999999999999998877655432  345443222 11112224678999999999877    


Q ss_pred             cccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccc
Q psy12482        262 LSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS  340 (419)
Q Consensus       262 ~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~  340 (419)
                                 ...+.|+++++..|..+|.+ .+||||++.+.++.+...+++|.+.++|.+|+||+.|.|. +.+.+|.
T Consensus       232 -----------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~-i~pgdLa  299 (362)
T KOG1013|consen  232 -----------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD-IGPGDLA  299 (362)
T ss_pred             -----------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc-CCccchh
Confidence                       78999999999999999999 9999999999988888889999999999999999999995 9999999


Q ss_pred             cCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCCC
Q psy12482        341 ERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSL  411 (419)
Q Consensus       341 ~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~~  411 (419)
                      ...+.|.|||.+..+..+.+|-+.+++             ...++...||.+.+-.+...+..||-|....
T Consensus       300 ~~kv~lsvgd~~~G~s~d~~GG~~~g~-------------~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~~  357 (362)
T KOG1013|consen  300 YKKVALSVGDYDIGKSNDSIGGSMLGG-------------YRRGEVHKHWGRCLFDQDANFERSSGLETEG  357 (362)
T ss_pred             cceEEEeecccCCCcCccCCCcccccc-------------cccchhhcCcccccccccccccccccccccc
Confidence            999999999999988899999998876             5688999999999999999999999987654

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.95  E-value=3.5e-27  Score=193.82  Aligned_cols=134  Identities=30%  Similarity=0.468  Sum_probs=121.3

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|.++++|.+.               .+.|.|+|++|+||+.++.. .+||||++.+.+++....+++|.+++++.||
T Consensus         1 ~G~l~~~l~y~~~---------------~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP   65 (136)
T cd08404           1 RGELLLSLCYQPT---------------TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNP   65 (136)
T ss_pred             CCeEEEEEEEeCC---------------CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCC
Confidence            4999999999987               78999999999999999877 8999999999766544567899999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES  403 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~  403 (419)
                      +|||+|.|. ++..++....|.|+|||++.++++++||++.|++..             .+.+..||.+|...|+++|++
T Consensus        66 ~w~e~F~f~-v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-------------~~~~~~~w~~l~~~~~~~i~~  131 (136)
T cd08404          66 VFNESFVFD-IPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-------------SGSGGHHWKEVCNPPRRQIAE  131 (136)
T ss_pred             ccCceEEEE-CCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC-------------CCchHHHHHHHHhCCCCeeeE
Confidence            999999996 887777777899999999999999999999999853             577899999999999999999


Q ss_pred             eeec
Q psy12482        404 CIPL  407 (419)
Q Consensus       404 w~~l  407 (419)
                      ||.|
T Consensus       132 Wh~l  135 (136)
T cd08404         132 WHML  135 (136)
T ss_pred             EEec
Confidence            9997

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.95  E-value=6.5e-27  Score=188.87  Aligned_cols=125  Identities=56%  Similarity=0.941  Sum_probs=115.2

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|.++|.|.+..+.|.|+|++|+||++++...|.+||||++++.++.....++||++++++.||+|||+|.|.++.++
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~   80 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE   80 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence            49999999999999999999999999999886437899999999998876666789999999999999999999998888


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ  232 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~  232 (419)
                      +....|.|+|||++.++++++||++.++|.++...+....||+|+
T Consensus        81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            888899999999999999999999999999998888888999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.95  E-value=1.2e-26  Score=187.01  Aligned_cols=124  Identities=52%  Similarity=0.951  Sum_probs=114.9

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL  188 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l  188 (419)
                      |+|++++.|.+..+.|.|.|++|+||+..+...+.+||||++++.+++.+..++||++++++.||+|||+|.|.++.+++
T Consensus         2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l   81 (125)
T cd04029           2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQL   81 (125)
T ss_pred             cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHh
Confidence            99999999999999999999999999988754478999999999988766667899999999999999999999988888


Q ss_pred             cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482        189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ  232 (419)
Q Consensus       189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~  232 (419)
                      .+..|.|.|||++.++++++||++.++|.++...+....|++|+
T Consensus        82 ~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          82 ETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             CCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            88899999999999999999999999999999999999999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.94  E-value=8.6e-27  Score=181.70  Aligned_cols=118  Identities=25%  Similarity=0.385  Sum_probs=103.9

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCcc
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW  325 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~w  325 (419)
                      |+|+++++|.|.               .++|.|+|++|+||+ .+ +.+||||+|.+.+..+ ..+++|+++++|+||+|
T Consensus         1 ~~l~fsL~Y~~~---------------~~~L~V~vikA~~L~-~~-g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvf   62 (118)
T cd08677           1 PKLHYSLSYDKQ---------------KAELHVNILEAENIS-VD-AGCECYISGCVSVSEG-QKEAQTALKKLALHTQW   62 (118)
T ss_pred             CeEEEEEEEcCc---------------CCEEEEEEEEecCCC-CC-CCCCeEEEEEEcCCcC-ccEEEcceecCCCCCcc
Confidence            589999999998               899999999999998 33 3699999999986543 45789999999999999


Q ss_pred             ccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHH
Q psy12482        326 NHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQM  393 (419)
Q Consensus       326 ne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l  393 (419)
                      ||+|.|. ++.+++...+|.|+|||+|.++++++||++.++++++           .-+.+.+||.++
T Consensus        63 nE~f~F~-v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~-----------~~~~~~~~W~~~  118 (118)
T cd08677          63 EEELVFP-LPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADV-----------SMMLGAAQWVDL  118 (118)
T ss_pred             ccEEEEe-CCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccc-----------cCCccccchhcC
Confidence            9999996 9999999999999999999999999999999999873           345567788754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.94  E-value=2.1e-26  Score=184.04  Aligned_cols=121  Identities=29%  Similarity=0.415  Sum_probs=111.5

Q ss_pred             EEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCC-CCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482        110 EVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK-AGKRKTRVKKHTLSPVFDEVLKFQLTLEDL  188 (419)
Q Consensus       110 ~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~-~~~~kT~~~~~t~nP~wne~f~f~v~~~~l  188 (419)
                      +|.++|.|++..+.|.|+|++|+||+.++.. +.+||||+++++|+..+ ..++||++++++.||+|||+|.|.++.+++
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~-~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L   80 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIP-ENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKL   80 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccccC-CCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHh
Confidence            7999999999999999999999999999876 88999999999998765 357899999999999999999999999999


Q ss_pred             cccEEEEEEEecCCCCCCceeEEEEEeCcccccCC-CCCceecC
Q psy12482        189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD-PSPKCYPL  231 (419)
Q Consensus       189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~-~~~~w~~L  231 (419)
                      .+.+|.|+||+++..+++++||++.|+|+++.... ....||+|
T Consensus        81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            99999999999999999999999999999986665 46789876

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.94  E-value=3.5e-26  Score=184.54  Aligned_cols=125  Identities=49%  Similarity=0.827  Sum_probs=113.4

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      .|+|.++|.|.+..+.|.|.|++|+||++++...|.+||||++++.|+.....++||++++++.||+|||+|.|.++.++
T Consensus         1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~   80 (128)
T cd08392           1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL   80 (128)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence            49999999999999999999999999999886337899999999998876666889999999999999999999998888


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCC---CCCceecCc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD---PSPKCYPLQ  232 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~---~~~~w~~L~  232 (419)
                      +....|.|.|||.+.++++++||++.|+|.++....   ....||+|.
T Consensus        81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            888899999999999889999999999999987653   567899873

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.94  E-value=2.3e-26  Score=186.83  Aligned_cols=124  Identities=27%  Similarity=0.330  Sum_probs=109.6

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCC-CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTK-RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~-~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      .|+|.++|+|.+..++|.|.|++|+||+.++.. .+.+||||+|++.+++++..++||++++++.||+|||+|.|.++.+
T Consensus         1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~   80 (138)
T cd08407           1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE   80 (138)
T ss_pred             CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence            399999999999999999999999999998832 1448999999999888777889999999999999999999999999


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      ++.+.+|.|+|||++.++++++||++.+++..  .+.+..+|..+..
T Consensus        81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~  125 (138)
T cd08407          81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLD  125 (138)
T ss_pred             HhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHh
Confidence            99999999999999999999999999999975  3444566766543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.94  E-value=5.8e-26  Score=182.22  Aligned_cols=119  Identities=41%  Similarity=0.721  Sum_probs=110.0

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEc-ccCc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL-TLED  187 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v-~~~~  187 (419)
                      |+|.++|.|.  .+.|.|.|++|++|+..+ . +.+||||++++.++.....++||++++++.||+|||+|.|.+ +..+
T Consensus         2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~-~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~   77 (122)
T cd08381           2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-G-SDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED   77 (122)
T ss_pred             CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-C-CCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence            8999999999  799999999999999999 6 899999999999877666688999999999999999999997 6677


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecC
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPL  231 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L  231 (419)
                      +....|.|+|||++.++++++||++.++|.++........||+|
T Consensus        78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            88889999999999999999999999999998887778899987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.94  E-value=1.5e-25  Score=183.24  Aligned_cols=125  Identities=29%  Similarity=0.515  Sum_probs=111.0

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      .|+|.++|.|  ..+.|.|.|++|+||++.+...|.+||||++++.+++.+..++||+++++++||+|||+|.|.+.   
T Consensus        17 ~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~---   91 (146)
T cd04028          17 MGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS---   91 (146)
T ss_pred             cceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc---
Confidence            7999999999  47899999999999998753227899999999999887667899999999999999999999987   


Q ss_pred             ccccEEEEEEE-ecCCCCCCceeEEEEEeCcccccCCCCCceecCccccch
Q psy12482        188 LECRTLWLSVW-HSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEI  237 (419)
Q Consensus       188 l~~~~l~i~v~-d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~  237 (419)
                      +.+..|.|+|| |++.++++++||++.|+|+++........||+|.+....
T Consensus        92 l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~  142 (146)
T cd04028          92 PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL  142 (146)
T ss_pred             CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence            56779999999 678888899999999999999888888999999876543

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.94  E-value=1.3e-25  Score=184.49  Aligned_cols=133  Identities=29%  Similarity=0.503  Sum_probs=120.4

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ  324 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~  324 (419)
                      |+|.|+++|.+.               .+.|.|.|++|+||+..+.. .+||||++.+.+.+....+++|+++.++.||.
T Consensus         1 G~i~~~l~y~~~---------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~   65 (134)
T cd00276           1 GELLLSLSYLPT---------------AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPV   65 (134)
T ss_pred             CeEEEEEEeeCC---------------CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCe
Confidence            899999999987               79999999999999998866 89999999998765555678999999999999


Q ss_pred             cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEee
Q psy12482        325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESC  404 (419)
Q Consensus       325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w  404 (419)
                      |||+|.|. ++...+....|.|+|||++..+++++||.+.|++++             .|.+.++|++|+++|+++|++|
T Consensus        66 wne~f~f~-i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~-------------~~~~~~~W~~l~~~~~~~~~~w  131 (134)
T cd00276          66 FNEAFSFD-VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS-------------GGEELEHWNEMLASPRKPIARW  131 (134)
T ss_pred             eeeeEEEE-CCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC-------------CCcHHHHHHHHHhCCCCceEEe
Confidence            99999996 877776677899999999998889999999999963             6778999999999999999999


Q ss_pred             eec
Q psy12482        405 IPL  407 (419)
Q Consensus       405 ~~l  407 (419)
                      |.|
T Consensus       132 h~~  134 (134)
T cd00276         132 HKL  134 (134)
T ss_pred             eeC
Confidence            987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.93  E-value=1.3e-25  Score=182.79  Aligned_cols=124  Identities=27%  Similarity=0.382  Sum_probs=111.4

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      .|+|.++|.|.+..++|.|.|++|+||+..+.. |.+||||+|++.+++.+..++||++++++.||+|||+|.|.++.++
T Consensus         1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~-g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~   79 (136)
T cd08406           1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGK-TTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV   79 (136)
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCC-CCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence            399999999999999999999999999999876 8999999999998877767789999999999999999999999999


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      +.+..|.|+|||++.++++++||++.|+...  .+.+..+|..+...
T Consensus        80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~  124 (136)
T cd08406          80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLAS  124 (136)
T ss_pred             hCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHC
Confidence            9999999999999999999999999998764  34556778776543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>KOG2059|consensus

Probab=99.93  E-value=1.8e-25  Score=214.16  Aligned_cols=220  Identities=21%  Similarity=0.368  Sum_probs=183.7

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      ..|.|.|.+|+||++.+.. |..||||.|.+...    ...+|.++.+++.|.|.|.|.|.++.   ....|.|.|||.|
T Consensus         5 ~sl~vki~E~knL~~~~~~-g~~D~yC~v~lD~E----~v~RT~tv~ksL~PF~gEe~~~~iP~---~F~~l~fYv~D~d   76 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPS-GMRDCYCTVNLDQE----EVCRTATVEKSLCPFFGEEFYFEIPR---TFRYLSFYVWDRD   76 (800)
T ss_pred             cceeEEEeecccCCCCCCC-CCcCcceEEeecch----hhhhhhhhhhhcCCccccceEEecCc---ceeeEEEEEeccc
Confidence            4689999999999999988 99999999999643    36899999999999999999999987   3558999999999


Q ss_pred             CCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEe
Q psy12482        202 MFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIK  281 (419)
Q Consensus       202 ~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~  281 (419)
                       +++|+.||.+.|.-+++....+.+.|+.|++-...    ....|+|++.+.+.+...             ...+...++
T Consensus        77 -~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~d----sEVQG~v~l~l~~~e~~~-------------~~~~~c~~L  138 (800)
T KOG2059|consen   77 -LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPD----SEVQGKVHLELALTEAIQ-------------SSGLVCHVL  138 (800)
T ss_pred             -cccccccceeeeeHHHHhhCCCCccceeccccCCC----hhhceeEEEEEEeccccC-------------CCcchhhhh
Confidence             89999999999999988877888999999875443    456799999999987642             456777888


Q ss_pred             ccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcc-------------ccccCeEEEEE
Q psy12482        282 EAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLE-------------ELSERCLELTV  348 (419)
Q Consensus       282 ~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~-------------~~~~~~l~i~V  348 (419)
                      .+|++.+...+.+|||++|...+.. +...++|.++++|.+|.|||.|+|. +..+             +.....|++++
T Consensus       139 ~~r~~~P~~~~~~dp~~~v~~~g~~-~~~~~~T~~~kkt~~p~~~Ev~~f~-~~~~~~~s~ks~~~~~~e~~~l~irv~l  216 (800)
T KOG2059|consen  139 KTRQGLPIINGQCDPFARVTLCGPS-KLKEKKTKVKKKTTNPQFDEVFYFE-VTREESYSKKSLFMPEEEDDMLEIRVDL  216 (800)
T ss_pred             hhcccCceeCCCCCcceEEeecccc-hhhccccceeeeccCcchhhheeee-eccccccccchhcCcccCCceeeEEEee
Confidence            8888877666689999999986543 3444799999999999999999996 5443             11234589999


Q ss_pred             EE-CCCCCCCceeEEEEEeCCC
Q psy12482        349 WD-HDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       349 ~d-~~~~~~~~~lG~~~i~l~~  369 (419)
                      |+ ++....+.|+|++.+++..
T Consensus       217 W~~~~~~~~~~FlGevrv~v~~  238 (800)
T KOG2059|consen  217 WNDLNLVINDVFLGEVRVPVDV  238 (800)
T ss_pred             ccchhhhhhhhhceeEEeehhh
Confidence            98 6777779999999999865

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.93  E-value=6.5e-25  Score=175.41  Aligned_cols=122  Identities=17%  Similarity=0.290  Sum_probs=106.0

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCC-CceeccEEEEEcccCc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTL-SPVFDEVLKFQLTLED  187 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~  187 (419)
                      .+|+++|+|.|..++|+|.|++|+||+++... +.+||||+|++.+++++..++||+++++|. ||+|||+|.|+|+.++
T Consensus         1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~~~-~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~   79 (135)
T cd08692           1 AELQLGTCFQAVNSRIQLQILEAQNLPSSSTP-LTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE   79 (135)
T ss_pred             CeEEEEeeecCcCCeEEEEEEEccCCCcccCC-CCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh
Confidence            37999999999999999999999999998654 677999999999888888899999999995 6999999999998865


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                       .+..|.|+|||++..+++++||++.++.++. ...+..+|.++..
T Consensus        80 -~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~  123 (135)
T cd08692          80 -HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIA  123 (135)
T ss_pred             -heeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHh
Confidence             4679999999999999999999999999762 3334577877643

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.93  E-value=7.8e-25  Score=176.34  Aligned_cols=122  Identities=22%  Similarity=0.422  Sum_probs=112.9

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cccC
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLE  186 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~  186 (419)
                      .|+|.+++.|++..++|.|+|++|+||+..+.. +.+||||++.+.++..  .++||+++++ .||+|||+|.|. ++.+
T Consensus         2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~-~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~   77 (124)
T cd08389           2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRG-GASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPE   77 (124)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEecCCCchhcC-CCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHH
Confidence            699999999999999999999999999999876 8899999999988764  4789999888 999999999998 8888


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      ++.+..|.|.|||++.++++++||++.|+|+++........|++|++
T Consensus        78 ~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          78 ELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             HhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            88899999999999999999999999999999988888899999975

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.92  E-value=1.9e-24  Score=174.81  Aligned_cols=122  Identities=33%  Similarity=0.606  Sum_probs=112.9

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|++++.|.+..+.|.|+|++|++|+..+.. +.+||||++++.+++.  .+++|++++++.||+|||+|.|.++..+
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~~~   78 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFS-GTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVFEVPPQE   78 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCC-CCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEEeCCHHH
Confidence            699999999999999999999999999999877 8899999999987653  3689999999999999999999998887


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ  232 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~  232 (419)
                      +....|.|+|||++.++++++||++.++++++........|++|+
T Consensus        79 l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          79 LPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             hCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            777899999999999999999999999999998888889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.92  E-value=1.6e-24  Score=174.87  Aligned_cols=121  Identities=34%  Similarity=0.634  Sum_probs=106.6

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTS  322 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n  322 (419)
                      +|+|++++.|.+.               .+.|.|+|++|+||++++..  .+||||+|.+.+......+++|++++++.|
T Consensus         1 ~G~i~~sl~y~~~---------------~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~n   65 (125)
T cd08393           1 QGSVQFALDYDPK---------------LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLN   65 (125)
T ss_pred             CcEEEEEEEEECC---------------CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCC
Confidence            4999999999987               78999999999999999863  899999999987765566789999999999


Q ss_pred             CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      |+|||+|.|+ ++..++....|.|+|||++.++++++||++.|+|+++...+....||+
T Consensus        66 P~~nE~f~f~-v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~  123 (125)
T cd08393          66 PVFNETLRYK-VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYP  123 (125)
T ss_pred             CccCceEEEE-CCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEE
Confidence            9999999997 888888888899999999999999999999999999654444455554

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.92  E-value=2.3e-24  Score=174.46  Aligned_cols=124  Identities=35%  Similarity=0.570  Sum_probs=110.2

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEE-EcccC
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF-QLTLE  186 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f-~v~~~  186 (419)
                      +|+|.+++.|.+..+.|+|+|++|+||+..+...+.+||||++++.++..  +++||++++++.||+|||+|.| .++..
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~--~~~kT~v~~~t~nP~wnE~F~f~~~~~~   79 (128)
T cd08388           2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRVLRKTRNPVYDETFTFYGIPYN   79 (128)
T ss_pred             CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC--ceeeccEEcCCCCCceeeEEEEcccCHH
Confidence            69999999999999999999999999999876437899999999987653  3679999999999999999999 57777


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccC--CCCCceecCcc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD--DPSPKCYPLQE  233 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~--~~~~~w~~L~~  233 (419)
                      ++.+..|.|.|||++.++++++||++.++|+++...  .+.+.|.+|++
T Consensus        80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            777778999999999999999999999999998776  56688999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.92  E-value=2.7e-24  Score=173.37  Aligned_cols=121  Identities=35%  Similarity=0.586  Sum_probs=106.3

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCC-C-CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKS-N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTS  322 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~-~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n  322 (419)
                      .|+|++++.|.+.               .+.|.|.|++|+||++.+. . .+||||+|.+.+++....+++|++++++.|
T Consensus         1 ~G~i~~sl~y~~~---------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~n   65 (125)
T cd04029           1 SGEILFSLSYDYK---------------TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTN   65 (125)
T ss_pred             CcEEEEEEEEECC---------------CCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCC
Confidence            3999999999988               7999999999999998765 3 899999999987766667889999999999


Q ss_pred             CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      |+|||+|.|. ++..++....|.|+|||++.++++++||++.|+++.+...+....||.
T Consensus        66 P~wnE~f~f~-i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  123 (125)
T cd04029          66 PVYNETLKYS-ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLP  123 (125)
T ss_pred             CcccceEEEE-CCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEE
Confidence            9999999997 888888888899999999999999999999999998655555555554

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.92  E-value=1.1e-24  Score=174.26  Aligned_cols=108  Identities=19%  Similarity=0.347  Sum_probs=100.4

Q ss_pred             ceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCC-cceeecccccCCCCCc
Q psy12482        247 ELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGR-ASKHKTGIIKRSTSPQ  324 (419)
Q Consensus       247 ~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~-~~~~~T~~~~~t~nP~  324 (419)
                      +|.+++.|.+.               .++|.|+|++|+||++++.. .+||||++.+.++..+ ..+++|++++++.||+
T Consensus         2 ~i~~sL~Y~~~---------------~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPv   66 (124)
T cd08680           2 QVQIGLRYDSG---------------DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPV   66 (124)
T ss_pred             eEEEEEEECCC---------------CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCc
Confidence            68999999998               79999999999999998877 8999999999987654 3588999999999999


Q ss_pred             cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      |||+|.|+ ++.+++.+.+|.|+|||++.++++++||.+.|+|+++
T Consensus        67 fnE~F~f~-v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~  111 (124)
T cd08680          67 FNEVFRVP-ISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF  111 (124)
T ss_pred             cccEEEEE-CCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence            99999997 9999999999999999999999999999999999995

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.92  E-value=5.7e-24  Score=172.94  Aligned_cols=124  Identities=39%  Similarity=0.717  Sum_probs=113.6

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|.++|.|.+..+.|+|+|++|+||+..+.. +.+||||+|++.+++....+++|++++++.||+|||+|.|.+...+
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~   80 (127)
T cd04030           2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSS-DIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE   80 (127)
T ss_pred             CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCC-CCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence            699999999999999999999999999999986 8899999999987765566889999999999999999999998887


Q ss_pred             ccccEEEEEEEecCCC--CCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482        188 LECRTLWLSVWHSDMF--GRNDFLGEVMMSLENKVFDDPSPKCYPLQ  232 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~--~~~~~iG~~~~~l~~~~~~~~~~~w~~L~  232 (419)
                      +....|.|.|||.+.+  +++++||++.++|.++........||+|+
T Consensus        81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            8778999999999875  68999999999999988888889999884

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.92  E-value=5.5e-24  Score=172.07  Aligned_cols=122  Identities=60%  Similarity=1.025  Sum_probs=111.6

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCC-CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVD-TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      |+|.+++.|.+..+.|.|+|++|+||+..+ .. +.+||||++++.+++....+++|++++++.||+|||+|.|.+...+
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~   79 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKK-KRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ   79 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCC-CCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHH
Confidence            899999999999999999999999999988 55 7899999999987765445789999999999999999999998877


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecC
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPL  231 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L  231 (419)
                      +....|.|+|||++.++++++||++.++|+++........||+|
T Consensus        80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            77789999999999999999999999999999877788999986

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.92  E-value=6.3e-24  Score=171.81  Aligned_cols=122  Identities=37%  Similarity=0.658  Sum_probs=111.8

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|.+++.|.+..+.|.|+|++|+||+..+.. +.+||||++++.++..  .+++|++++++.||+|||+|.|.++..+
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~-~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~i~~~~   78 (124)
T cd08385           2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTFKVPYSE   78 (124)
T ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCC-CCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEEeCCHHH
Confidence            699999999999999999999999999999877 8899999999987653  3789999999999999999999998777


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ  232 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~  232 (419)
                      +....|.|+|||++.++++++||++.++++++..+....+|++|.
T Consensus        79 l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          79 LGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             hCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            777799999999999999999999999999988877889999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.92  E-value=4.5e-24  Score=171.26  Aligned_cols=118  Identities=32%  Similarity=0.691  Sum_probs=103.6

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ  324 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~  324 (419)
                      |+|.+++.|.                 .+.|.|.|++|+||+.++ + .+||||+|.+.+......+++|++++++.||+
T Consensus         2 G~l~~~l~y~-----------------~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~   63 (122)
T cd08381           2 GQVKLSISYK-----------------NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPT   63 (122)
T ss_pred             CeEEEEEEEe-----------------CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCC
Confidence            9999999998                 388999999999999999 6 99999999998776666789999999999999


Q ss_pred             cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      |||+|.|+.++..++....|.|+|||++.++++++||++.|+|+++...+....||.
T Consensus        64 wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~  120 (122)
T cd08381          64 FNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYP  120 (122)
T ss_pred             cccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEE
Confidence            999999973377788888899999999999999999999999999765544455554

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.91  E-value=8.5e-24  Score=168.65  Aligned_cols=118  Identities=24%  Similarity=0.420  Sum_probs=104.2

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL  188 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l  188 (419)
                      |+|.+++.|  ..+.|.|+|++|+||++++ . +.+||||+++++|+..+..++||++++++.||+|||+|.|.++.+++
T Consensus         1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~-g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~   76 (119)
T cd08685           1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-S-GTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDY   76 (119)
T ss_pred             CEEEEEEEE--cCCEEEEEEEEEECCCCCC-C-CCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHh
Confidence            788888888  5799999999999999988 5 88999999999988766667899999999999999999999987766


Q ss_pred             cccEEEEEEEecCCCC-CCceeEEEEEeCcccccCCCCCceecC
Q psy12482        189 ECRTLWLSVWHSDMFG-RNDFLGEVMMSLENKVFDDPSPKCYPL  231 (419)
Q Consensus       189 ~~~~l~i~v~d~~~~~-~~~~iG~~~~~l~~~~~~~~~~~w~~L  231 (419)
                      .. .|.|+|||.+..+ ++++||++.|++.++..+.....||.|
T Consensus        77 ~~-~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          77 QK-RLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CC-EEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            54 6889999998765 478999999999998877778899976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.91  E-value=1.2e-23  Score=169.73  Aligned_cols=109  Identities=31%  Similarity=0.507  Sum_probs=101.0

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCC--CCCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKS--NTVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~--~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      |+|.+++.|.+.               .++|.|+|++|+||++++.  +.+||||++.+.++.....++||++++++.||
T Consensus         2 G~i~~sl~Y~~~---------------~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nP   66 (128)
T cd08392           2 GEIEFALHYNFR---------------TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNP   66 (128)
T ss_pred             cEEEEEEEEeCC---------------CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCC
Confidence            999999999998               7999999999999999885  38999999999887666668899999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      +|||+|.|+ ++..++....|.|.|||++.++++++||++.|+|+++
T Consensus        67 vfNE~F~f~-v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~  112 (128)
T cd08392          67 VFNETLKYV-VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADW  112 (128)
T ss_pred             ccceEEEEE-cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCc
Confidence            999999997 8888888889999999999999999999999999985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.91  E-value=2.1e-23  Score=169.19  Aligned_cols=123  Identities=41%  Similarity=0.714  Sum_probs=108.5

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEc-ccC
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL-TLE  186 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v-~~~  186 (419)
                      .|+|.++|.|.+..+.|.|+|++|++|+..+.. +.+||||+|++.+++....+++|++++++.||+|||+|.|.+ ...
T Consensus         2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   80 (125)
T cd04031           2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDG-SLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE   80 (125)
T ss_pred             cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCC-CCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence            699999999999999999999999999999877 889999999998765555678999999999999999999984 445


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ  232 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~  232 (419)
                      ++....|.|+|||++..+++++||++.++|.+ ........||+|+
T Consensus        81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~-~~~~~~~~W~~L~  125 (125)
T cd04031          81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLAD-ALLDDEPHWYPLQ  125 (125)
T ss_pred             HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccc-ccccCCcceEECc
Confidence            66677999999999998899999999999998 3444557899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.91  E-value=3.7e-24  Score=175.43  Aligned_cols=125  Identities=25%  Similarity=0.361  Sum_probs=111.7

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      .|+|.++|.|.+..++|.|.|++|+||+..+ . +.+||||+|++.+++....+++|++++++.||+|||+|.|.++.++
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~-~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~   78 (137)
T cd08409           1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-H-AHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ   78 (137)
T ss_pred             CcEEEEEEEECCCCCeEEEEEEEecCCCccc-C-CCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence            4999999999999999999999999999988 5 7799999999998766556789999999999999999999999888


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      +....|.|+||+.+..+++++||++.++......+.+.++|..+...
T Consensus        79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~  125 (137)
T cd08409          79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK  125 (137)
T ss_pred             hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence            98889999999999888999999999997665556667888887543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.91  E-value=5.8e-24  Score=173.98  Aligned_cols=123  Identities=26%  Similarity=0.433  Sum_probs=108.1

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCC-CCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK-SKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      |+|.++|.|++..++|.|+|++|+||+.++.. +.+||||++++.++. ....++||++++++.||+|||+|.|.++.++
T Consensus         2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~-~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~   80 (138)
T cd08408           2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMN-KAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQ   80 (138)
T ss_pred             CeEEEEeEEcCCCCeEEEEEEEecCCCccccC-CCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHH
Confidence            79999999999999999999999999999887 889999999999753 3345689999999999999999999999999


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      +.+..|.|+|||++.++++++||++.+++... ...+..+|+.+..
T Consensus        81 l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~-~~~~~~hW~~~l~  125 (138)
T cd08408          81 LSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS-GEEEEEHWNEMKE  125 (138)
T ss_pred             hCccEEEEEEEECCCCCCCcEEEEEEECCcCC-CchHHHHHHHHHh
Confidence            99999999999999999999999999998753 2233467887754

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.91  E-value=3.3e-23  Score=169.49  Aligned_cols=128  Identities=27%  Similarity=0.411  Sum_probs=107.5

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccC-CC-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVK-SN-TVDAFCKAYLLPDKGRASKHKTGIIKRS  320 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~-~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t  320 (419)
                      ...|+|.+++.|.                 .+.|.|+|++|+||++.+ .. .+||||++++.++.....++||++++++
T Consensus        15 ~~~G~l~lsl~y~-----------------~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kkt   77 (146)
T cd04028          15 PSMGDIQLGLYDK-----------------KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKT   77 (146)
T ss_pred             CCcceEEEEEEeC-----------------CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCC
Confidence            3569999999993                 589999999999999875 44 8999999999987666678999999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEE-ECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCc
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVW-DHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNF  399 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~-d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~  399 (419)
                      +||+|||+|.|+ ++   +.+..|.|+|| |++.++++++||++.|+|+.+.                         .+.
T Consensus        78 lnPvfNE~F~f~-v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~-------------------------~~~  128 (146)
T cd04028          78 LDPLYQQQLVFD-VS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLD-------------------------LSN  128 (146)
T ss_pred             CCCccCCeEEEE-Ec---CCCCEEEEEEEeCCCCCCCCceEEEEEEEccccc-------------------------CCC
Confidence            999999999997 65   56778999999 6888889999999999998731                         122


Q ss_pred             eEEeeeeccCCCCcCCC
Q psy12482        400 WVESCIPLRSSLEFSSP  416 (419)
Q Consensus       400 ~i~~w~~l~~~~~~~~~  416 (419)
                      .+..|++|.++.+.-.|
T Consensus       129 ~~~~Wy~L~~~~~~~~~  145 (146)
T cd04028         129 LVIGWYKLFPTSSLVDP  145 (146)
T ss_pred             CceeEEecCCcccccCC
Confidence            36788888888776655

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.90  E-value=4.2e-23  Score=173.54  Aligned_cols=125  Identities=35%  Similarity=0.575  Sum_probs=111.3

Q ss_pred             eeEEEEEEEEEc------------cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCcee
Q psy12482        108 KGEVEFGLQYNY------------KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVF  175 (419)
Q Consensus       108 ~G~i~~~l~y~~------------~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~w  175 (419)
                      +|+|.++|.|.+            ..+.|.|+|++|+||+..+.. +.+||||++++.+++....++||++++++.||+|
T Consensus         1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~-g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~W   79 (162)
T cd04020           1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSG-GTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVW   79 (162)
T ss_pred             CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCC-CCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCC
Confidence            499999999999            458999999999999999876 8999999999987766666899999999999999


Q ss_pred             ccEEEEE-cccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        176 DEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       176 ne~f~f~-v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      ||+|.|. +..+++.+..|.|+|||++.++++++||++.+++.++........|+.+..
T Consensus        80 nE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020          80 NHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             CCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            9999998 445667777999999999999899999999999999887777788888754

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.90  E-value=4.5e-23  Score=167.14  Aligned_cols=123  Identities=33%  Similarity=0.620  Sum_probs=110.5

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cccC
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLE  186 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~  186 (419)
                      +|+|++++.|.+..+.|.|.|++|++|+..+.. +.+||||++++.+++.  .+.+|++++++.||+|||+|.|. ++.+
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~-~~~dpyv~v~~~~~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~   78 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFS-GTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPYE   78 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCccCC-CCCCceEEEEECCCCC--cceeeeeecCCCCCccceeEEEcccCHH
Confidence            699999999999999999999999999998877 7899999999976653  36899999999999999999998 4445


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      .+....|.|+|||++.++++++||++.+++.++........|+.|++
T Consensus        79 ~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          79 KLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             HhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            56667899999999999999999999999999988888899999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.90  E-value=5.2e-23  Score=166.31  Aligned_cols=122  Identities=32%  Similarity=0.585  Sum_probs=111.1

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCC-CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVD-TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      |+|.+++.|.+..+.|.|.|++|++|+..+ .. +.+||||++++.+++..  .++|++++++.||+|||+|.|.++...
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~-~~~dpyV~v~l~~~~~~--~~~T~v~~~~~~P~wne~f~f~i~~~~   77 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDV-AHCDPFVKVCLLPDERR--SLQSKVKRKTQNPNFDETFVFQVSFKE   77 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCC-CCCCcEEEEEEeeCCCC--ceEeeeEcCCCCCccceEEEEEcCHHH
Confidence            899999999999999999999999999988 55 78999999999876633  578999999999999999999998877


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      +....|.|.|||++..+++++||++.++|.++........|++|.+
T Consensus        78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            7777999999999998889999999999999988888889999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.90  E-value=3e-23  Score=170.45  Aligned_cols=124  Identities=30%  Similarity=0.449  Sum_probs=111.3

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|.++++|.+..+.|.|+|++|++|+..+.. |.+||||++++.+++....+++|++++++.||.|||+|.|.++..+
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~-g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~   79 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVS-GLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE   79 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccC-CCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence            499999999999999999999999999999887 8999999999987765555789999999999999999999998877


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      +....|.|+|||++.++++++||++.+++..  ...+..+|++|...
T Consensus        80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~  124 (136)
T cd08404          80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNP  124 (136)
T ss_pred             hCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhC
Confidence            7777999999999999999999999999987  35567889988654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.90  E-value=1.3e-22  Score=164.29  Aligned_cols=109  Identities=26%  Similarity=0.485  Sum_probs=96.7

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTS  322 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n  322 (419)
                      +|+|.+++.|.+.               .+.|.|+|++|+||+..+..  .+||||+|.+.+..  ..++||++++++.|
T Consensus         2 ~G~l~~~l~y~~~---------------~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~--~~~~kT~v~~~t~n   64 (128)
T cd08388           2 LGTLFFSLRYNSE---------------KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK--EHKVKTRVLRKTRN   64 (128)
T ss_pred             CeEEEEEEEEECC---------------CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc--CceeeccEEcCCCC
Confidence            5999999999988               79999999999999998753  88999999997543  34679999999999


Q ss_pred             CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      |+|||+|.|..++..++.+..|.|+|||++.++++++||++.|+|+++
T Consensus        65 P~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l  112 (128)
T cd08388          65 PVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGA  112 (128)
T ss_pred             CceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEecccc
Confidence            999999999447777777778999999999999999999999999873

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.90  E-value=3.7e-23  Score=169.31  Aligned_cols=124  Identities=25%  Similarity=0.439  Sum_probs=107.7

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL  188 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l  188 (419)
                      |+|.++|.|.+..+.|.|.|++|++|+..+.. |.+||||++++.++.....+++|++++++.||+|||+|.|.++.+++
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~-g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l   79 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMS-QGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEEL   79 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCC-CCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHh
Confidence            89999999999999999999999999999887 88999999999766554557899999999999999999999988888


Q ss_pred             cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      .+..|.|+|||++..+++++||++.|+.... ......+|+.|.+.
T Consensus        80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~-~~~~~~~W~~l~~~  124 (135)
T cd08410          80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS-GPSETNHWRRMLNS  124 (135)
T ss_pred             CCCEEEEEEEeCCCCCCCcEEEEEEEcCccC-CchHHHHHHHHHhC
Confidence            8789999999999999999999999876442 22235778887654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.89  E-value=5.6e-23  Score=168.92  Aligned_cols=124  Identities=28%  Similarity=0.502  Sum_probs=109.8

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|.+++.|.+..+.|.|.|++|++|+.++.. +.+||||+|++.+++....+++|++++++.||.|||+|.|.++.++
T Consensus         1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~   79 (136)
T cd08402           1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ   79 (136)
T ss_pred             CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCC-CCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence            499999999999999999999999999999887 8899999999987665556789999999999999999999998877


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      +....|.|+|||++.++++++||++.+++...  +.+..+|+++...
T Consensus        80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~  124 (136)
T cd08402          80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS  124 (136)
T ss_pred             hCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence            77779999999999999999999999999763  4556788887544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.89  E-value=6e-23  Score=168.71  Aligned_cols=124  Identities=31%  Similarity=0.548  Sum_probs=108.7

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|.++|+|.+..+.|.|+|++|+||+..+.. +.+||||+|++.+++....+++|++++++.||+|||+|.|.++.+.
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~-g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~   79 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMDIN-GTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER   79 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccC-CCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence            499999999999999999999999999998876 8899999999986655455789999999999999999999988777


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      +.+..|.|+|||++.++++++||++.+++.+.  +....+|++|...
T Consensus        80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~  124 (136)
T cd08405          80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSK  124 (136)
T ss_pred             hCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhC
Confidence            77779999999999999999999999999874  4455678776543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.89  E-value=2.3e-22  Score=162.61  Aligned_cols=119  Identities=31%  Similarity=0.585  Sum_probs=103.1

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|++++.|.+.               .+.|.|+|++|+||++++.. .+||||+|.+.+.+  ..+++|++++++.||
T Consensus         2 ~G~l~~sl~y~~~---------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~~P   64 (124)
T cd08387           2 RGELHFSLEYDKD---------------MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR--SNTKQSKIHKKTLNP   64 (124)
T ss_pred             CCEEEEEEEECCC---------------CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC--CCcEeCceEcCCCCC
Confidence            5999999999997               79999999999999998877 89999999996543  346899999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      +|||.|.|. ++..++....|.|+|||++.++++++||++.|+++++...+....||.
T Consensus        65 ~wne~f~f~-v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~  121 (124)
T cd08387          65 EFDESFVFE-VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRK  121 (124)
T ss_pred             CcccEEEEe-CCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEE
Confidence            999999996 888788778899999999999999999999999998654444444443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.89  E-value=1.1e-22  Score=166.62  Aligned_cols=123  Identities=29%  Similarity=0.468  Sum_probs=108.6

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL  188 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l  188 (419)
                      |+|.+++.|.+..+.|+|+|++|++|+..+.. |.+||||+|++.+++.+..+++|++++++.||.|||+|.|.++.+.+
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~-g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~   79 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDIT-GFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV   79 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccccC-CCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence            89999999999999999999999999999887 88999999999876655567899999999999999999999987777


Q ss_pred             cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      ....|.|+|||++..+++++||++.+++..  ...+..+|+++...
T Consensus        80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~~  123 (134)
T cd08403          80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNA--DGQGREHWNEMLAN  123 (134)
T ss_pred             CCCEEEEEEEECCCCCCCceeEEEEECCCC--CCchHHHHHHHHHC
Confidence            777899999999999999999999999873  34556778887543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.89  E-value=3.3e-22  Score=162.52  Aligned_cols=121  Identities=26%  Similarity=0.544  Sum_probs=105.2

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|.+++.|.+.               .+.|.|+|++|+||+..+.. .+||||+|.+.+++....+++|++++++.||
T Consensus         2 ~G~l~~~l~y~~~---------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP   66 (127)
T cd04030           2 LGRIQLTIRYSSQ---------------RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNP   66 (127)
T ss_pred             CeEEEEEEEEeCC---------------CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCC
Confidence            5999999999988               79999999999999999987 9999999999876555678999999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCC--CCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRL--TSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~--~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      +|||+|.|. ++..+++...|.|.|||++.+  +++++||++.|+++++..++....||.
T Consensus        67 ~wne~f~f~-i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~  125 (127)
T cd04030          67 VFDETFEFP-VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYD  125 (127)
T ss_pred             EECeEEEEe-cCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEE
Confidence            999999996 887888888899999999875  689999999999998644444444443

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.89  E-value=3.2e-22  Score=158.87  Aligned_cols=118  Identities=14%  Similarity=0.277  Sum_probs=99.6

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccC-CCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKH-TLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      |.|.|+|++|++|+..+ . |.+||||++.+.     ..+.+|+++.+ +.||+|||+|.|.+...   ...|.|+|||+
T Consensus         2 g~L~v~v~~Ak~l~~~~-~-g~sDPYv~i~lg-----~~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~   71 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-L-TRMDPYCRIRVG-----HAVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDE   71 (121)
T ss_pred             cEEEEEEEEccCCCcCC-C-CCCCceEEEEEC-----CEEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeC
Confidence            78999999999988776 5 899999999995     34678999875 89999999999998653   24799999999


Q ss_pred             CCCCCCceeEEEEEeCc-ccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        201 DMFGRNDFLGEVMMSLE-NKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~-~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      +.+++|++||++.+++. .+..++....|++|.+....     ...|+|+|+++|
T Consensus        72 d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~-----~~~g~i~l~l~y  121 (121)
T cd04016          72 RAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE-----DKEGMINLVFSY  121 (121)
T ss_pred             CCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC-----CCceEEEEEEeC
Confidence            99999999999999996 45666678999999864432     355999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.89  E-value=1.5e-22  Score=165.81  Aligned_cols=122  Identities=32%  Similarity=0.567  Sum_probs=108.5

Q ss_pred             EEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCccc
Q psy12482        110 EVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLE  189 (419)
Q Consensus       110 ~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~  189 (419)
                      +|.++|.|.+..+.|.|+|++|++|+..+.. +.+||||+|++.+++.+..+++|++++++.||+|||+|.|.++..++.
T Consensus         1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~-~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~   79 (133)
T cd08384           1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDAN-GYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLA   79 (133)
T ss_pred             CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCC-CCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhC
Confidence            4789999999999999999999999999887 889999999999876656678999999999999999999999887777


Q ss_pred             ccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        190 CRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       190 ~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      ...|.|+|||++..+++++||++.+++..  .+....+|+++...
T Consensus        80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~  122 (133)
T cd08384          80 KKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKN  122 (133)
T ss_pred             CCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhC
Confidence            78999999999988899999999999975  33456789987654

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.88  E-value=4.2e-22  Score=160.42  Aligned_cols=119  Identities=20%  Similarity=0.364  Sum_probs=103.2

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      .|+|.+++.|.+.               .++|.|+|++|+||++.+.+ .+||||++.+.+..  ..+++|+++++ .||
T Consensus         2 ~G~l~~sl~Y~~~---------------~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~--~~~~kTkv~~~-~nP   63 (124)
T cd08389           2 CGDLDVAFEYDPS---------------ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK--KQRAKTKVQRG-PNP   63 (124)
T ss_pred             CEEEEEEEEECCC---------------CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC--cceeecccccC-CCC
Confidence            4999999999998               79999999999999999877 88999999887653  35689999887 999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      +|||+|.|+.++..++.+.+|.|+|||++.++++++||++.|+|+++...+....||+
T Consensus        64 ~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~  121 (124)
T cd08389          64 VFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLT  121 (124)
T ss_pred             cccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEe
Confidence            9999999965788888889999999999999999999999999998654444445544

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.88  E-value=6.3e-22  Score=159.96  Aligned_cols=119  Identities=38%  Similarity=0.661  Sum_probs=102.4

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccC-CC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVK-SN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~-~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      |+|.+++.|.+.               .+.|.|+|++|+||+.++ .. .+||||+|.+.+......+++|++++++.||
T Consensus         1 G~i~~~l~y~~~---------------~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P   65 (123)
T cd08521           1 GEIEFSLSYNYK---------------TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNP   65 (123)
T ss_pred             CeEEEEEEEeCC---------------CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCC
Confidence            899999999987               799999999999999988 55 8999999999766544567899999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecc
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWM  380 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~  380 (419)
                      +|||+|.|. ++..++....|.|+|||++.++++++||++.++|+++........||
T Consensus        66 ~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~  121 (123)
T cd08521          66 VFNETLKYH-ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWY  121 (123)
T ss_pred             cccceEEEe-CCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEE
Confidence            999999996 88777877889999999999999999999999999854333333443

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.88  E-value=7.7e-22  Score=159.58  Aligned_cols=108  Identities=31%  Similarity=0.532  Sum_probs=97.5

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      .|+|.+++.|.+.               .+.|.|+|++|+||+.++.. .+||||+|.+.++.  ..+++|++++++.||
T Consensus         2 ~G~l~~~l~y~~~---------------~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~--~~~~kT~v~~~t~nP   64 (124)
T cd08385           2 LGKLQFSLDYDFQ---------------SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNP   64 (124)
T ss_pred             ccEEEEEEEEeCC---------------CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC--CCceecccCcCCCCC
Confidence            4999999999987               79999999999999998877 89999999997643  346899999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      +|||.|.|. ++..++....|.|+|||++.++++++||++.|+++++
T Consensus        65 ~wne~f~f~-i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~  110 (124)
T cd08385          65 VFNETFTFK-VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTV  110 (124)
T ss_pred             ceeeeEEEe-CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcc
Confidence            999999997 7777777778999999999999999999999999885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.88  E-value=6.1e-22  Score=163.15  Aligned_cols=127  Identities=35%  Similarity=0.522  Sum_probs=102.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcc-------------cCccc
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLT-------------LEDLE  189 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~-------------~~~l~  189 (419)
                      +|.|+|++|++|+.  .+ |.+||||+|++.++..+..+++|++++++.||+|||+|.|.+.             .+++.
T Consensus         1 kL~V~Vi~ArnL~~--~~-g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~   77 (148)
T cd04010           1 KLSVRVIECSDLAL--KN-GTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE   77 (148)
T ss_pred             CEEEEEEeCcCCCC--CC-CCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccccc
Confidence            48999999999998  34 7899999999987655555789999999999999999999984             33455


Q ss_pred             ccEEEEEEEecCCCCCCceeEEEEEeCcccccC-CCCCceecCccccchh------hhhhccccceEEEE
Q psy12482        190 CRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD-DPSPKCYPLQERSEIL------DELICSKGELIIGL  252 (419)
Q Consensus       190 ~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~-~~~~~w~~L~~~~~~~------~~~~~~~G~l~l~l  252 (419)
                      ...|.|.|||++..+++++||++.|++.++... .....||+|.+.....      .......|.|++.+
T Consensus        78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (148)
T cd04010          78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI  147 (148)
T ss_pred             EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence            568999999999888999999999999998776 5678999998876544      22234556665543

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.88  E-value=7.6e-22  Score=159.99  Aligned_cols=110  Identities=37%  Similarity=0.657  Sum_probs=98.4

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      .|+|.+++.|.+.               .++|.|+|++|+||+.++.+ .+||||+|.+.+.+....+++|++++++.||
T Consensus         2 ~G~l~~~l~~~~~---------------~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP   66 (125)
T cd04031           2 TGRIQIQLWYDKV---------------TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNP   66 (125)
T ss_pred             cEEEEEEEEEeCC---------------CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCC
Confidence            4999999999998               79999999999999999887 8999999999765555567899999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~  369 (419)
                      +|||+|.|..+...++....|.|+|||++..+++++||++.++|++
T Consensus        67 ~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~  112 (125)
T cd04031          67 EWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLAD  112 (125)
T ss_pred             ccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence            9999999963455666677899999999999999999999999987

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.88  E-value=4.9e-22  Score=157.43  Aligned_cols=112  Identities=23%  Similarity=0.294  Sum_probs=95.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeC--CCCCCCeeecccccCCCCceeccEEEEEcccC-cccccEEEEEEEe
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP--DKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE-DLECRTLWLSVWH  199 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~--~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-~l~~~~l~i~v~d  199 (419)
                      +|+|.|++|++|+..+ . |.+||||+|++..  ...+.++++|++++++.||+|||+|.|.++.+ .+....|.|.|||
T Consensus         1 kL~V~Vi~A~~L~~~d-~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D   78 (120)
T cd08395           1 KVTVKVVAANDLKWQT-T-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKD   78 (120)
T ss_pred             CEEEEEEECcCCCccc-C-CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence            4899999999999887 4 8899999999853  22333467999999999999999999999764 4667789999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccCCCCCceecCccccc
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSE  236 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~  236 (419)
                      ++..+++++||++.+++.++...+....|++|.+...
T Consensus        79 ~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~  115 (120)
T cd08395          79 YCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIH  115 (120)
T ss_pred             ecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCccc
Confidence            9988889999999999999988888889999976543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.88  E-value=5.8e-22  Score=160.61  Aligned_cols=120  Identities=27%  Similarity=0.374  Sum_probs=100.6

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc---CcccccEEEEEEEec
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL---EDLECRTLWLSVWHS  200 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~---~~l~~~~l~i~v~d~  200 (419)
                      ++|+|++|+||+..+.. |.+||||+|++.     ..+++|++++++.||+|||+|.|.++.   +++....|.|.|||+
T Consensus         1 ~~V~V~~A~~L~~~d~~-g~~dpYv~v~l~-----~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~   74 (126)
T cd08682           1 VQVTVLQARGLLCKGKS-GTNDAYVIIQLG-----KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHR   74 (126)
T ss_pred             CEEEEEECcCCcCCCCC-cCCCceEEEEEC-----CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEc
Confidence            57999999999998876 889999999995     346899999999999999999999876   334567999999999


Q ss_pred             CCCCCCceeEEEEEeCcccc--cCCCCCceecCccccchhhhhhccccceEEEE
Q psy12482        201 DMFGRNDFLGEVMMSLENKV--FDDPSPKCYPLQERSEILDELICSKGELIIGL  252 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~--~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l  252 (419)
                      +.++++++||++.++|.++.  .......||+|.+....   .....|+|+|++
T Consensus        75 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~---~~~~~Gei~l~~  125 (126)
T cd08682          75 NLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGK---DDKERGEIEVDI  125 (126)
T ss_pred             cccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCC---CccccceEEEEe
Confidence            99989999999999999986  45567899999864331   134569999876

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.88  E-value=4.6e-22  Score=158.62  Aligned_cols=107  Identities=24%  Similarity=0.378  Sum_probs=93.0

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCcc
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW  325 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~w  325 (419)
                      |+|.+++.|.                 .+.|.|+|++|+||++++.+.+||||+|.+.++.....+++|++++++.||+|
T Consensus         1 G~l~l~~~~~-----------------~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~   63 (119)
T cd08685           1 GQLKLSIEGQ-----------------NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLF   63 (119)
T ss_pred             CEEEEEEEEc-----------------CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCcc
Confidence            7899999883                 68999999999999999844899999999998766667889999999999999


Q ss_pred             ccEEEEcccCccccccCeEEEEEEECCCCC-CCceeEEEEEeCCCCC
Q psy12482        326 NHTVVYRDVSLEELSERCLELTVWDHDRLT-SNEFLGGIRLNLGHGK  371 (419)
Q Consensus       326 ne~f~f~~v~~~~~~~~~l~i~V~d~~~~~-~~~~lG~~~i~l~~~~  371 (419)
                      ||+|.|+ ++..++.. .|.|+|||++..+ ++++||.+.|++.++.
T Consensus        64 nE~F~f~-v~~~~~~~-~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~  108 (119)
T cd08685          64 HETFSFD-VNERDYQK-RLLVTVWNKLSKSRDSGLLGCMSFGVKSIV  108 (119)
T ss_pred             ccEEEEE-cChHHhCC-EEEEEEECCCCCcCCCEEEEEEEecHHHhc
Confidence            9999996 77666644 5899999999875 4789999999998854

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.87  E-value=2.8e-21  Score=156.57  Aligned_cols=119  Identities=29%  Similarity=0.487  Sum_probs=100.1

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|++++.|.+.               .+.|.|.|++|+||+.++.. .+||||+|.+.+..  ..+++|++++++.||
T Consensus         2 ~G~l~~~l~y~~~---------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~--~~~~kT~v~~~t~~P   64 (125)
T cd08386           2 LGRIQFSVSYDFQ---------------ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK--KHKLETKVKRKNLNP   64 (125)
T ss_pred             ccEEEEEEEECCC---------------CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC--CcceeeeeecCCCCC
Confidence            5999999999987               78999999999999998877 89999999986543  345899999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecc
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWM  380 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~  380 (419)
                      +|||+|.|..++.+.+....|.|+|||++..+++++||++.|+++++...+....|+
T Consensus        65 ~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~  121 (125)
T cd08386          65 HWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWK  121 (125)
T ss_pred             ccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEE
Confidence            999999996345556666789999999999999999999999998854333333333

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.87  E-value=1.3e-21  Score=160.72  Aligned_cols=124  Identities=35%  Similarity=0.524  Sum_probs=110.9

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL  188 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l  188 (419)
                      |+|.++++|.+..+.|.|.|++|++|+..+.. +.+||||++++.+++....+++|++++++.||.|||+|.|.++...+
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l   79 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGK-GLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQL   79 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCC-CCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHh
Confidence            89999999999999999999999999998876 78999999999877655557899999999999999999999988777


Q ss_pred             cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        189 ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       189 ~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      ....|.|+|||.+..+++++||++.+++++  ......+|++|....
T Consensus        80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~  124 (134)
T cd00276          80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP  124 (134)
T ss_pred             CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence            677999999999988899999999999998  566678999987653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.85  E-value=5.5e-21  Score=155.12  Aligned_cols=123  Identities=29%  Similarity=0.426  Sum_probs=102.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc-CcccccEEEEEEEecC
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL-EDLECRTLWLSVWHSD  201 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-~~l~~~~l~i~v~d~~  201 (419)
                      +|+|+|++|++|+..+.. +.+||||++++.+     .+++|++++++.||+|||.|.|.+.. ..+....|.|.|||.+
T Consensus         1 ~L~V~vi~A~~L~~~d~~-g~~dpyv~v~~~~-----~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~   74 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQ-GSSSAYVELDFDG-----QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDR   74 (127)
T ss_pred             CeEEEEEEeeCCCCCCCC-CCcCcEEEEEECC-----EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCC
Confidence            489999999999999876 8899999999962     36799999999999999999999864 3344568999999998


Q ss_pred             CCC-CCceeEEEEEeCcccc-cCCCCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482        202 MFG-RNDFLGEVMMSLENKV-FDDPSPKCYPLQERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       202 ~~~-~~~~iG~~~~~l~~~~-~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      .++ ++++||++.++++++. .......||+|..+...    ...+|+|.|++.+.
T Consensus        75 ~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~----~~~~G~l~l~~~~~  126 (127)
T cd04022          75 RSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLF----SRVRGEIGLKVYIT  126 (127)
T ss_pred             CCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCC----CCccEEEEEEEEEc
Confidence            886 8999999999999986 34556889999865332    23569999998763

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.85  E-value=1.3e-20  Score=152.14  Aligned_cols=121  Identities=37%  Similarity=0.527  Sum_probs=105.1

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cccC
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLE  186 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~  186 (419)
                      .|+|.+++.|.+..+.|+|+|++|++|+..+.. +.+||||++++.++.....+++|++++++.||.|||+|.|. +...
T Consensus         1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~   79 (123)
T cd04035           1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDAN-GLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE   79 (123)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCC-CCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence            499999999999999999999999999998876 78999999999876655567899999999999999999996 5555


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceec
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYP  230 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~  230 (419)
                      ++....|.|+|||++.. ++++||++.++++++........|+.
T Consensus        80 ~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~  122 (123)
T cd04035          80 DIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC  122 (123)
T ss_pred             HhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence            66667999999999988 89999999999999876655555544

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.85  E-value=6e-21  Score=151.23  Aligned_cols=106  Identities=18%  Similarity=0.187  Sum_probs=85.5

Q ss_pred             eEEEEEeccccccccCCCCCCcEEEEEEeC--CCCCcceeecccccCCCCCccccEEEEcccCcc-ccccCeEEEEEEEC
Q psy12482        275 SLHVLIKEAKSLCPVKSNTVDAFCKAYLLP--DKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLE-ELSERCLELTVWDH  351 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~--~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~-~~~~~~l~i~V~d~  351 (419)
                      +|+|+|++|+||+..+.+.+||||+|.+.+  ...+..+++|.++.+++||+|||+|.|. ++.+ .+....|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~-v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFI-LGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEE-eeCcCCCceeEEEEEEEEe
Confidence            589999999999988766899999999864  2233456799999999999999999996 6643 45667799999999


Q ss_pred             CCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        352 DRLTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      +..+++++||++.|+++++..++....|+.
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~  109 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLP  109 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEE
Confidence            988889999999999988644444334443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.85  E-value=1.7e-20  Score=151.63  Aligned_cols=118  Identities=28%  Similarity=0.495  Sum_probs=101.3

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccC-CC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVK-SN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~-~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      |+|.+++.|.+.               .+.|.|.|++|+||+.++ .. .+||||+|.+.+++  ...++|++++++.||
T Consensus         1 G~l~~~l~y~~~---------------~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~--~~~~~T~v~~~~~~P   63 (123)
T cd08390           1 GRLWFSVQYDLE---------------EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE--RRSLQSKVKRKTQNP   63 (123)
T ss_pred             CEEEEEEEECCC---------------CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC--CCceEeeeEcCCCCC
Confidence            899999999988               799999999999999988 45 89999999987553  245789999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      +|||.|.|. ++...+....|.|+|||++..+++++||++.|+|+++........|++
T Consensus        64 ~wne~f~f~-i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~  120 (123)
T cd08390          64 NFDETFVFQ-VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRD  120 (123)
T ss_pred             ccceEEEEE-cCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEe
Confidence            999999996 887777777899999999999899999999999998654444444544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.85  E-value=2.6e-20  Score=152.19  Aligned_cols=112  Identities=35%  Similarity=0.577  Sum_probs=99.5

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCC--CCCeeecccccCCCCceeccEEEEEccc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKS--KAGKRKTRVKKHTLSPVFDEVLKFQLTL  185 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~--~~~~~kT~~~~~t~nP~wne~f~f~v~~  185 (419)
                      .|+|.++++|.+..+.|+|+|++|++|+..+.. +.+||||+|++.+...  ...+++|++++++.||+|||+|.|.+..
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~-g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~   80 (133)
T cd04009           2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSN-GSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP   80 (133)
T ss_pred             ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCC-CCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence            699999999999999999999999999998876 8899999999986542  2447899999999999999999999866


Q ss_pred             Cc--ccccEEEEEEEecCCCCCCceeEEEEEeCcccc
Q psy12482        186 ED--LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKV  220 (419)
Q Consensus       186 ~~--l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~  220 (419)
                      ..  +....|.|+|||++.++++++||++.++|+++.
T Consensus        81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence            32  346689999999999988999999999999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=1.8e-20  Score=150.79  Aligned_cols=121  Identities=25%  Similarity=0.406  Sum_probs=104.2

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM  202 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~  202 (419)
                      +|+|+|++|++|+..+.. +.+||||++++..    ...++|++++++.||+|||.|.|.+..  + ...|.|+|||++.
T Consensus         1 ~L~v~v~~a~~L~~~d~~-g~~Dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~f~v~~--~-~~~l~~~v~D~d~   72 (121)
T cd04042           1 QLDIHLKEGRNLAARDRG-GTSDPYVKFKYGG----KTVYKSKTIYKNLNPVWDEKFTLPIED--V-TQPLYIKVFDYDR   72 (121)
T ss_pred             CeEEEEEEeeCCCCcCCC-CCCCCeEEEEECC----EEEEEeeeccCCCCCccceeEEEEecC--C-CCeEEEEEEeCCC
Confidence            489999999999999887 8999999999852    236899999999999999999999753  2 3589999999999


Q ss_pred             CCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482        203 FGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVP  256 (419)
Q Consensus       203 ~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~  256 (419)
                      .+++++||++.++++++........|++|.+....     ...|+|.|.++|.|
T Consensus        73 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~-----~~~G~l~l~~~~~~  121 (121)
T cd04042          73 GLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD-----EDLGYISLVVTLTP  121 (121)
T ss_pred             CCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc-----cCceEEEEEEEECC
Confidence            98999999999999998888888999999765431     34599999999876

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.84  E-value=2.1e-20  Score=149.83  Aligned_cols=117  Identities=23%  Similarity=0.373  Sum_probs=99.0

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      |.|+|+|++|++|+..+.. +.+||||++++..     .+++|++++ ++.||+|||.|.|.+...  ....|.|+|||+
T Consensus         1 g~L~V~v~~A~~L~~~~~~-~~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~   72 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKL-DKQDPYCVLRIGG-----VTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDD   72 (118)
T ss_pred             CEEEEEEEEccCCCCCCcC-CCCCceEEEEECC-----CccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeC
Confidence            5799999999999999876 8999999999963     357788765 579999999999998764  245899999999


Q ss_pred             CCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        201 DMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      +..+ +++||++.+++.++.......+|++|....       ...|+|+++++|
T Consensus        73 ~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~-------~~~G~i~l~l~f  118 (118)
T cd08681          73 DKRK-PDLIGDTEVDLSPALKEGEFDDWYELTLKG-------RYAGEVYLELTF  118 (118)
T ss_pred             CCCC-CcceEEEEEecHHHhhcCCCCCcEEeccCC-------cEeeEEEEEEEC
Confidence            8876 899999999999987766778999997643       245999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.84  E-value=1.8e-20  Score=151.27  Aligned_cols=122  Identities=30%  Similarity=0.466  Sum_probs=103.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM  202 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~  202 (419)
                      +|+|+|++|++|+..+.. +.+||||+|++.     ..+.+|++++++.||+|||+|.|.+....  ...|.|+|||++.
T Consensus         1 ~L~v~vi~a~~L~~~d~~-~~~DPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~   72 (123)
T cd04025           1 RLRCHVLEARDLAPKDRN-GTSDPFVRVFYN-----GQTLETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDL   72 (123)
T ss_pred             CEEEEEEEeeCCCCCCCC-CCcCceEEEEEC-----CEEEeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCC
Confidence            489999999999999876 789999999985     23579999999999999999999986643  4589999999999


Q ss_pred             CCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEE
Q psy12482        203 FGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGL  252 (419)
Q Consensus       203 ~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l  252 (419)
                      .+++++||++.++++++........|+.|.+............|.|.+.+
T Consensus        73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          73 VSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             CCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            99999999999999998766667899999876655444566778888765

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.84  E-value=2.9e-20  Score=148.92  Aligned_cols=120  Identities=23%  Similarity=0.365  Sum_probs=99.9

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |.|.|++|+||+..+...|.+||||+|++.  +  ...++|+++++|.||+|||+|.|.++..   ...|.|.|||++.+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~--~--~~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~   74 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD--Q--EEVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVL   74 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEEC--C--ccEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCC
Confidence            679999999999874323789999999994  1  2357999999999999999999999753   35899999999999


Q ss_pred             CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      +++++||++.++++++........|++|++....    .+..|+|+++++|
T Consensus        75 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~----~~~~G~i~l~~~~  121 (121)
T cd08401          75 RRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDAD----SEVQGKVHLELRL  121 (121)
T ss_pred             CCCceEEEEEEEHHHccCCCCcEeeEEEEccCCC----CcccEEEEEEEEC
Confidence            9999999999999998777777899999875332    2246999998864

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=9.6e-20  Score=151.03  Aligned_cols=126  Identities=19%  Similarity=0.191  Sum_probs=102.1

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccC-CCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKH-TLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM  202 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~  202 (419)
                      |+|+|++|++|+..+.. |.+||||++++..     ++.+|+++.+ +.||+|||.|.|.+...  ....|.|.|||++.
T Consensus         2 L~V~Vi~A~~L~~~d~~-g~sDPYV~v~l~~-----~~~kTk~~~~~t~nP~WNE~F~f~v~~~--~~~~l~v~V~d~~~   73 (150)
T cd04019           2 LRVTVIEAQDLVPSDKN-RVPEVFVKAQLGN-----QVLRTRPSQTRNGNPSWNEELMFVAAEP--FEDHLILSVEDRVG   73 (150)
T ss_pred             EEEEEEEeECCCCCCCC-CCCCeEEEEEECC-----EEeeeEeccCCCCCCcccCcEEEEecCc--cCCeEEEEEEEecC
Confidence            78999999999999987 8999999999962     3678888876 69999999999998542  23589999999998


Q ss_pred             CCCCceeEEEEEeCcccccC----CCCCceecCccccch--hhhhhccccceEEEEEEeCC
Q psy12482        203 FGRNDFLGEVMMSLENKVFD----DPSPKCYPLQERSEI--LDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       203 ~~~~~~iG~~~~~l~~~~~~----~~~~~w~~L~~~~~~--~~~~~~~~G~l~l~l~~~~~  257 (419)
                      .+++++||++.++|+++...    .....||+|......  ........|+|+|.++|.+.
T Consensus        74 ~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~  134 (150)
T cd04019          74 PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG  134 (150)
T ss_pred             CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence            88899999999999997542    346899999876431  00113456999999999754

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.83  E-value=1.1e-19  Score=146.97  Aligned_cols=122  Identities=20%  Similarity=0.285  Sum_probs=99.4

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      ..|+|+|++|+||+..    +.+||||+|++..    .+..+|+++ ++.||.|||+|.|.+...++.  .+.|.|||.+
T Consensus         4 ~~L~V~Vi~A~~L~~~----~~~DPYv~v~l~~----~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~--~l~v~v~d~~   72 (126)
T cd08400           4 RSLQLNVLEAHKLPVK----HVPHPYCVISLNE----VKVARTKVR-EGPNPVWSEEFVFDDLPPDVN--SFTISLSNKA   72 (126)
T ss_pred             eEEEEEEEEeeCCCCC----CCCCeeEEEEECC----EeEEEeecC-CCCCCccCCEEEEecCCCCcC--EEEEEEEECC
Confidence            4699999999999864    4689999999942    224678874 689999999999986554433  7889999999


Q ss_pred             CCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        202 MFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       202 ~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      ..+++++||++.++|+++..+.....|++|.+....   .....|+|+|+++|.+.
T Consensus        73 ~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~---~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          73 KRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPL---KGGEWGSLRIRARYSHE  125 (126)
T ss_pred             CCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCC---CCCcCcEEEEEEEEEcc
Confidence            999999999999999998877778899999876431   13456999999999864

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.83  E-value=9.2e-20  Score=149.35  Aligned_cols=124  Identities=31%  Similarity=0.457  Sum_probs=102.3

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCC--CCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPD--KSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~--~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      |+|+|++|++|+..+.. +.+||||+|++.+.  +....+++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus         2 L~v~Vi~a~~L~~~d~~-~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~   77 (133)
T cd04033           2 LRVKVLAGIDLAKKDIF-GASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDEN   77 (133)
T ss_pred             EEEEEEEeECCCcccCC-CCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECC
Confidence            78999999999999876 88999999999753  2223357999999999999999999998653   347999999999


Q ss_pred             CCCCCceeEEEEEeCcccccCCC------CCceecCccccchhhhhhccccceEEEEEEe
Q psy12482        202 MFGRNDFLGEVMMSLENKVFDDP------SPKCYPLQERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       202 ~~~~~~~iG~~~~~l~~~~~~~~------~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      .++++++||++.+++.++....+      ...||+|.+....    ....|+|++++.|.
T Consensus        78 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~----~~~~G~l~~~~~~~  133 (133)
T cd04033          78 RLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK----SRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC----CcceeEEEEEEeeC
Confidence            99999999999999999876543      3589999865332    24569999999883

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.83  E-value=1.4e-19  Score=147.84  Aligned_cols=123  Identities=33%  Similarity=0.595  Sum_probs=106.6

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|.+++.|..  +.|+|+|++|++|+..+.. +.+||||+|.+.+.+....+++|++++++.||.|||+|.|.+...+
T Consensus         1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~-~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~   77 (131)
T cd04026           1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPN-GLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD   77 (131)
T ss_pred             CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCC-CCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh
Confidence            499999999987  8999999999999998876 7899999999986554456789999999999999999999976544


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                       ....|.|+|||++..+++++||++.+++.++... ....||+|....
T Consensus        78 -~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~  123 (131)
T cd04026          78 -KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE  123 (131)
T ss_pred             -cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence             3458999999999888999999999999997643 778899997654

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.83  E-value=1.1e-19  Score=145.25  Aligned_cols=115  Identities=27%  Similarity=0.437  Sum_probs=100.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM  202 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~  202 (419)
                      .|+|.|++|++|+..+.. +.+||||++++.     ..+++|++++++.||.|||+|.|.+...  ....|.|+|||++.
T Consensus         1 ~~~V~v~~a~~L~~~~~~-~~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~   72 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDN-GLSDPYVKFRLG-----NEKYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDT   72 (116)
T ss_pred             CEEEEEEEEECCCCCCCC-CCCCcEEEEEEC-----CEeEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCC
Confidence            378999999999999887 889999999995     2368999999999999999999997653  35689999999999


Q ss_pred             CCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482        203 FGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       203 ~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      .+++++||++.++|+++........|++|.+.          .|+|++.+.|.
T Consensus        73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~----------~G~~~~~~~~~  115 (116)
T cd08376          73 GKKDEFIGRCEIDLSALPREQTHSLELELEDG----------EGSLLLLLTLT  115 (116)
T ss_pred             CCCCCeEEEEEEeHHHCCCCCceEEEEEccCC----------CcEEEEEEEec
Confidence            88999999999999998877788899999764          29999988774

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.83  E-value=3.5e-19  Score=180.45  Aligned_cols=237  Identities=23%  Similarity=0.331  Sum_probs=170.7

Q ss_pred             cCCEEEEEEEeecCCCCCC--CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEE
Q psy12482        120 KQGALEIHVKQCKDLAPVD--TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSV  197 (419)
Q Consensus       120 ~~~~L~v~v~~a~~L~~~~--~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v  197 (419)
                      ..|.|.|+|.+|++|...+  .. +..|||+.+....-    ...||++++++.||+|||+|...+..  + ...|.++|
T Consensus       434 aIGVv~vkI~sa~~lk~~d~~i~-~~vDpyit~~~~~r----~~gkT~v~~nt~nPvwNEt~Yi~lns--~-~d~L~Lsl  505 (1227)
T COG5038         434 AIGVVEVKIKSAEGLKKSDSTIN-GTVDPYITVTFSDR----VIGKTRVKKNTLNPVWNETFYILLNS--F-TDPLNLSL  505 (1227)
T ss_pred             eeEEEEEEEeeccCccccccccc-CCCCceEEEEeccc----cCCccceeeccCCccccceEEEEecc--c-CCceeEEE
Confidence            4689999999999999887  44 78999999996421    23499999999999999998877643  2 34899999


Q ss_pred             EecCCCCCCceeEEEEEeCcccccCCCC--------------------CceecCccccchhhh-----hh----------
Q psy12482        198 WHSDMFGRNDFLGEVMMSLENKVFDDPS--------------------PKCYPLQERSEILDE-----LI----------  242 (419)
Q Consensus       198 ~d~~~~~~~~~iG~~~~~l~~~~~~~~~--------------------~~w~~L~~~~~~~~~-----~~----------  242 (419)
                      ||.+...+|+++|.+.++|..+......                    .+||+..+.......     ..          
T Consensus       506 yD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl  585 (1227)
T COG5038         506 YDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTL  585 (1227)
T ss_pred             EeccccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEe
Confidence            9998888999999999998865332110                    123332111110000     00          


Q ss_pred             --------------------------------------------------------------------------------
Q psy12482        243 --------------------------------------------------------------------------------  242 (419)
Q Consensus       243 --------------------------------------------------------------------------------  242 (419)
                                                                                                      
T Consensus       586 ~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~l  665 (1227)
T COG5038         586 REVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDL  665 (1227)
T ss_pred             eccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHh
Confidence                                                                                            


Q ss_pred             --------------ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCC
Q psy12482        243 --------------CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKG  307 (419)
Q Consensus       243 --------------~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~  307 (419)
                                    ..+|+|.++..|.|........+......+.|.++|.|..|.+|.....+ .+|||++|.+    +
T Consensus       666 i~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~----n  741 (1227)
T COG5038         666 IDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLV----N  741 (1227)
T ss_pred             hhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEe----c
Confidence                          01122222222222222222222222345689999999999999977777 9999999998    6


Q ss_pred             CcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCc
Q psy12482        308 RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKH  372 (419)
Q Consensus       308 ~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~  372 (419)
                      +..+.+|-....++||.|||.++-+ |.  ... ..+.+.+||....+.|..||++.+.+.++..
T Consensus       742 ~~~k~rti~~~~~~npiw~~i~Yv~-v~--sk~-~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~  802 (1227)
T COG5038         742 NLVKYRTIYGSSTLNPIWNEILYVP-VT--SKN-QRLTLECMDYEESGDDRNLGEVNINVSNVSK  802 (1227)
T ss_pred             ceeEEEEecccCccccceeeeEEEE-ec--CCc-cEEeeeeecchhccccceeceeeeeeeeeee
Confidence            7888999999999999999998876 32  222 3399999999999999999999999999765

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.83  E-value=1.8e-19  Score=145.37  Aligned_cols=113  Identities=33%  Similarity=0.551  Sum_probs=98.4

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|.+++.|.+.               .+.|+|+|++|++|++.+.. .+||||++.+.+......+++|++++++.||
T Consensus         1 ~G~~~~~l~y~~~---------------~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P   65 (123)
T cd04035           1 LGTLEFTLLYDPA---------------NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNP   65 (123)
T ss_pred             CcEEEEEEEEeCC---------------CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCC
Confidence            4999999999998               79999999999999988876 8999999999765555667999999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcC
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHY  373 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~  373 (419)
                      +|||.|.|..++..++....|.|+|||++.. ++++||.+.++++++...
T Consensus        66 ~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~  114 (123)
T cd04035          66 EFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPN  114 (123)
T ss_pred             CccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence            9999999953555566667799999999988 799999999999986544

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.82  E-value=1.3e-19  Score=145.37  Aligned_cols=116  Identities=22%  Similarity=0.418  Sum_probs=99.5

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |+|+|++|++|+..+.. +.+||||++++.+.+  ..+++|++++++.||+|||+|.|.+...  ....|.|+|||++..
T Consensus         2 L~V~vi~a~~L~~~~~~-~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~   76 (119)
T cd04036           2 LTVRVLRATNITKGDLL-STPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV   76 (119)
T ss_pred             eEEEEEEeeCCCccCCC-CCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC
Confidence            78999999999998876 889999999996443  2368999999999999999999998664  244799999999988


Q ss_pred             CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                       ++++||++.+++.++..+.....|++|.+..         .|+|.+.+.+
T Consensus        77 -~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~~---------~g~l~~~~~~  117 (119)
T cd04036          77 -MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQG---------KEELEVEFLL  117 (119)
T ss_pred             -CCcccEEEEEEHHHCCCCCcEEEEEECCCCC---------CceEEEEEEe
Confidence             8999999999999988888889999997642         3898888765

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.82  E-value=1.1e-19  Score=148.61  Aligned_cols=111  Identities=32%  Similarity=0.392  Sum_probs=96.3

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCC--CcceeecccccCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKG--RASKHKTGIIKRST  321 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~--~~~~~~T~~~~~t~  321 (419)
                      +|+|.+++.|.+.               .+.|.|+|++|++|+.++.. .+||||+|.+.+...  ...+++|+++++++
T Consensus         2 ~G~l~~~l~y~~~---------------~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~   66 (133)
T cd04009           2 YGVLTVKAYYRAS---------------EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTL   66 (133)
T ss_pred             ceEEEEEEEEcCC---------------CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCC
Confidence            5999999999987               78999999999999998877 899999999975432  35678999999999


Q ss_pred             CCccccEEEEcccCccc--cccCeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482        322 SPQWNHTVVYRDVSLEE--LSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~--~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      ||+|||.|.|+ +....  +....|.|+|||++.++++++||++.|+|+++.
T Consensus        67 nP~wnE~f~f~-i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          67 FPLFDESFEFN-VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             CCccCCEEEEE-echhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence            99999999996 65432  345679999999999999999999999998853

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>KOG1328|consensus

Probab=99.82  E-value=5.8e-21  Score=183.26  Aligned_cols=98  Identities=34%  Similarity=0.469  Sum_probs=85.7

Q ss_pred             cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCC--CcceeecccccCCCCCccccEEEEcccCccccc--cCeEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKG--RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS--ERCLELT  347 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~--~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~--~~~l~i~  347 (419)
                      ...|.|-|+.|+++.+.|.| .+||||.|++.+...  -...++|.++++|+||+|+|.|+|. ||++...  ..+|.|+
T Consensus       946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs-Vp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS-VPPEPCSTETAMLHFT 1024 (1103)
T ss_pred             ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-cCccccccccceEEEE
Confidence            45677888999999999999 999999999987643  2446899999999999999999997 8876654  5779999


Q ss_pred             EEECCCCCCCceeEEEEEeCCCCC
Q psy12482        348 VWDHDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       348 V~d~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      |||||-++.++|-|++.+.|++|+
T Consensus      1025 VMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             eeccceecccccchHHHHhhCCCC
Confidence            999999999999999999999863

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.82  E-value=1.6e-19  Score=146.19  Aligned_cols=122  Identities=20%  Similarity=0.363  Sum_probs=102.5

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |.|+|++|+||+.  .. |.+||||++++...   ..+++|++++++.||+|||.|.|.+...   ...|.|+|||++..
T Consensus         1 l~v~v~~A~~L~~--~~-g~~dpyv~v~~~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~   71 (126)
T cd08678           1 LLVKNIKANGLSE--AA-GSSNPYCVLEMDEP---PQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKK   71 (126)
T ss_pred             CEEEEEEecCCCC--CC-CCcCCEEEEEECCC---CcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCC
Confidence            5799999999998  44 89999999999521   2358999999999999999999998542   45899999999999


Q ss_pred             CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      +++++||++.+++.++........|++|.+....   .....|+|.+.+.|.+.
T Consensus        72 ~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---~~~~~G~l~l~~~~~~~  122 (126)
T cd08678          72 SDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYE---GDSVSGSITVEFLFMEP  122 (126)
T ss_pred             CCCceEEEEEEeHHHhccCCceeEEEEecCCCCC---CCCcceEEEEEEEEecc
Confidence            8999999999999998877777899999866331   13456999999999876

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.82  E-value=1.8e-19  Score=146.73  Aligned_cols=123  Identities=30%  Similarity=0.451  Sum_probs=101.7

Q ss_pred             CEEEEEEEeecCCCCCCC--CCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEe
Q psy12482        122 GALEIHVKQCKDLAPVDT--KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWH  199 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d  199 (419)
                      |.|+|.|++|++|+..+.  . +.+||||++++.     ..+++|++++++.||.|||+|.|.+..  .....|.|+|||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~-~~~dPyv~v~~~-----~~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d   72 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGK-GKSDPYAILSVG-----AQRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWD   72 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCC-CCcCCeEEEEEC-----CEEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEE
Confidence            579999999999999887  6 789999999984     336899999999999999999998865  335699999999


Q ss_pred             cCCCCCCceeEEEEEeCccccc---CCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVF---DDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~---~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      ++..+++++||++.+++.++..   ......|++|.+....  ......|+|+|.+.|
T Consensus        73 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~--~~~~~~G~i~l~~~~  128 (128)
T cd04024          73 KDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG--KTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccC--ccccccceEEEEEEC
Confidence            9998899999999999998762   3345789999876332  124567999998865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.82  E-value=1.3e-19  Score=144.82  Aligned_cols=115  Identities=20%  Similarity=0.265  Sum_probs=94.7

Q ss_pred             EEEEEEeecC---CCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        124 LEIHVKQCKD---LAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       124 L~v~v~~a~~---L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      |.|+|++|++   |+.++.. |.+||||+|.+.     .++.+|++++++.||+|||+|.|.+...   ...|.|+|||+
T Consensus         2 L~v~v~~A~~~~~l~~~d~~-g~sDPYv~i~~g-----~~~~rTk~~~~~~nP~WnE~f~f~v~~~---~~~l~v~V~d~   72 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGR-GSTDAYCVAKYG-----PKWVRTRTVEDSSNPRWNEQYTWPVYDP---CTVLTVGVFDN   72 (126)
T ss_pred             eEEEEEEeECCccccccccC-CCCCeeEEEEEC-----CEEeEcCcccCCCCCcceeEEEEEecCC---CCEEEEEEEEC
Confidence            8999999999   8888887 899999999995     3367999999999999999999998542   33899999999


Q ss_pred             CCCC------CCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEE
Q psy12482        201 DMFG------RNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELII  250 (419)
Q Consensus       201 ~~~~------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l  250 (419)
                      +..+      ++++||++.+++.++........|++|......   .....|+|.+
T Consensus        73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---~~~~~g~l~~  125 (126)
T cd08379          73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPS---GVKKMGELEC  125 (126)
T ss_pred             CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCC---CccCCcEEEe
Confidence            8873      899999999999998877777899999754321   1223476653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.82  E-value=2.3e-19  Score=146.57  Aligned_cols=119  Identities=29%  Similarity=0.524  Sum_probs=97.5

Q ss_pred             ccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEE
Q psy12482        119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVW  198 (419)
Q Consensus       119 ~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~  198 (419)
                      ...|.|+|+|++|++|+..+.. |.+||||++++.     ..+++|++++++.||.|||+|.|.+..  +....|.|+||
T Consensus        12 ~~~G~L~V~Vi~A~~L~~~d~~-g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V~   83 (136)
T cd08375          12 SGIGRLMVVIVEGRDLKPCNSN-GKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITVF   83 (136)
T ss_pred             CCcEEEEEEEEEeeCCCCCCCC-CCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEEEecC--ccCCEEEEEEE
Confidence            3468899999999999999877 899999999995     336899999999999999999999854  33458999999


Q ss_pred             ecCCCCCCceeEEEEEeCccccc-----CCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        199 HSDMFGRNDFLGEVMMSLENKVF-----DDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       199 d~~~~~~~~~iG~~~~~l~~~~~-----~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      |++.++++++||++.+++.++..     ..+...|..+..         ...|+|++++.+
T Consensus        84 D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~---------~~~g~i~l~~~~  135 (136)
T cd08375          84 DRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHE---------VPTGEVVVKLDL  135 (136)
T ss_pred             ECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecccc---------ccceeEEEEEEe
Confidence            99999899999999999998765     222334555532         234999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>KOG0696|consensus

Probab=99.81  E-value=2.5e-20  Score=170.03  Aligned_cols=111  Identities=33%  Similarity=0.602  Sum_probs=99.7

Q ss_pred             hccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482        242 ICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRS  320 (419)
Q Consensus       242 ~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t  320 (419)
                      +..+|.|++.+...                 ...|.|+|.+|+||.+||.+ .|||||++.+.++.....+++|++++.+
T Consensus       165 tE~RGrl~l~~~~~-----------------~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~  227 (683)
T KOG0696|consen  165 TERRGRLYLEAHIK-----------------RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKAT  227 (683)
T ss_pred             hhhcceEEEEEEec-----------------CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhh
Confidence            45679999988774                 58999999999999999999 9999999999998888899999999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      +||+|||+|.|. +.+++.. ..|.|+|||||+.+++++||...++++++.
T Consensus       228 LNP~wNEtftf~-Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl~  276 (683)
T KOG0696|consen  228 LNPVWNETFTFK-LKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISELQ  276 (683)
T ss_pred             cCccccceeEEe-ccccccc-ceeEEEEecccccccccccceecccHHHHh
Confidence            999999999996 6665554 459999999999999999999999998753

>KOG0696|consensus

Probab=99.81  E-value=3.5e-20  Score=169.09  Aligned_cols=123  Identities=34%  Similarity=0.585  Sum_probs=110.2

Q ss_pred             eeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc
Q psy12482        106 IVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL  185 (419)
Q Consensus       106 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~  185 (419)
                      +.+|+|.+.+..  ....|+|.|.+|+||.++|.+ |.+||||++.+.|+.+...++||++++.++||+|||+|.|.+.+
T Consensus       166 E~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpN-GlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp  242 (683)
T KOG0696|consen  166 ERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPN-GLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKP  242 (683)
T ss_pred             hhcceEEEEEEe--cCceEEEEehhhccccccCCC-CCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEeccc
Confidence            347999887775  578999999999999999998 99999999999998888889999999999999999999999887


Q ss_pred             CcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        186 EDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       186 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      ++- +..|.|+|||+|..++++|+|..+++++++ ...+...||.|..
T Consensus       243 ~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl-~K~p~~GWyKlLs  288 (683)
T KOG0696|consen  243 SDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISEL-QKAPVDGWYKLLS  288 (683)
T ss_pred             ccc-cceeEEEEecccccccccccceecccHHHH-hhcchhhHHHHhh
Confidence            764 459999999999999999999999999995 4567888998743

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.81  E-value=1.8e-19  Score=145.94  Aligned_cols=88  Identities=25%  Similarity=0.376  Sum_probs=76.5

Q ss_pred             EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCc---cccccCeEEEEEEEC
Q psy12482        276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSL---EELSERCLELTVWDH  351 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~---~~~~~~~l~i~V~d~  351 (419)
                      ++|+|++|+||+.++.+ .+||||+|.+.     ..+++|++++++.||+|||.|.|. ++.   .++....|.|+|||+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-----~~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~   74 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-----KEKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHR   74 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEEC-----CeeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEc
Confidence            57999999999998877 89999999983     245799999999999999999996 654   234567799999999


Q ss_pred             CCCCCCceeEEEEEeCCC
Q psy12482        352 DRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~  369 (419)
                      +.++++++||++.|+|++
T Consensus        75 ~~~~~d~~iG~~~i~l~~   92 (126)
T cd08682          75 NLLGLDKFLGQVSIPLND   92 (126)
T ss_pred             cccCCCceeEEEEEEHHH
Confidence            999999999999999965

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=3.7e-19  Score=142.56  Aligned_cols=113  Identities=30%  Similarity=0.452  Sum_probs=94.6

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |.|+|++|++|+.+     .+||||++++..     .+.+|++++++.||+|||+|.|.+..  +....|.|+|||++..
T Consensus         2 L~V~Vi~a~~L~~~-----~~Dpyv~v~l~~-----~~~kT~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~~   69 (121)
T cd08378           2 LYVRVVKARGLPAN-----SNDPVVEVKLGN-----YKGSTKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDKA   69 (121)
T ss_pred             EEEEEEEecCCCcc-----cCCCEEEEEECC-----ccccccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCCC
Confidence            78999999999877     479999999962     36899999999999999999998643  3456899999999977


Q ss_pred             CCCceeEEEEEeCcccccCC-----CCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        204 GRNDFLGEVMMSLENKVFDD-----PSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~~~~-----~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                       ++++||++.++++++....     ....||+|.+...     ...+|+|+|++.|
T Consensus        70 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-----~~~~G~i~l~~~~  119 (121)
T cd08378          70 -KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-----GRVGGELMLAVWF  119 (121)
T ss_pred             -cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-----CccceEEEEEEEe
Confidence             7899999999999976533     2468999987654     2356999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.81  E-value=1.9e-19  Score=141.98  Aligned_cols=105  Identities=27%  Similarity=0.467  Sum_probs=91.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCcee-ccEEEEEcccCcccccEEEEEEEecCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVF-DEVLKFQLTLEDLECRTLWLSVWHSDM  202 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~l~~~~l~i~v~d~~~  202 (419)
                      |.|+|++|++|+.++...+.+||||++++.+     .++||++++++.||.| ||+|.|.++..++.+..|.|+|||++.
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-----~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~   75 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-----TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT   75 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC-----eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence            6899999999999884337899999999963     4789999999999999 999999998877767799999999999


Q ss_pred             CCCCceeEEEEEeCccccc---CCCCCceecCcc
Q psy12482        203 FGRNDFLGEVMMSLENKVF---DDPSPKCYPLQE  233 (419)
Q Consensus       203 ~~~~~~iG~~~~~l~~~~~---~~~~~~w~~L~~  233 (419)
                      ++++++||++.+++.++..   ......||+|..
T Consensus        76 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          76 YSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             CCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            9999999999999999876   335788999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.80  E-value=2.6e-19  Score=147.56  Aligned_cols=95  Identities=22%  Similarity=0.400  Sum_probs=80.8

Q ss_pred             eEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEccc-------------Ccccccc
Q psy12482        275 SLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDV-------------SLEELSE  341 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v-------------~~~~~~~  341 (419)
                      +|.|+|++|+||+. ..+.+||||+|.+.+...+..+++|++++++.||+|||+|.|. +             +..+++.
T Consensus         1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEE-EecccccccccccCCcccccE
Confidence            48999999999988 3338999999999875445567899999999999999999997 5             3345566


Q ss_pred             CeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482        342 RCLELTVWDHDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       342 ~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      ..|.|.|||++.++++++||++.|++..+.
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~  108 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLD  108 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEeccccc
Confidence            779999999999889999999999998853

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>KOG2059|consensus

Probab=99.80  E-value=8.8e-20  Score=175.36  Aligned_cols=223  Identities=22%  Similarity=0.261  Sum_probs=169.3

Q ss_pred             cceeeecccCCCCcccceeeeceeeceeeccccccccCCCCcCcccccccCccCCcccccccccccccCCcccccccccC
Q psy12482          9 KRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNKSLLGARSD   88 (419)
Q Consensus         9 k~kT~v~~~t~nP~wnE~f~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (419)
                      ..||.++.+||.|.|.|.|.|++++.|.-     ++|.++|-| +.+++.+|.|.+.-.++....  ....|..+..   
T Consensus        39 v~RT~tv~ksL~PF~gEe~~~~iP~~F~~-----l~fYv~D~d-~~~D~~IGKvai~re~l~~~~--~~d~W~~L~~---  107 (800)
T KOG2059|consen   39 VCRTATVEKSLCPFFGEEFYFEIPRTFRY-----LSFYVWDRD-LKRDDIIGKVAIKREDLHMYP--GKDTWFSLQP---  107 (800)
T ss_pred             hhhhhhhhhhcCCccccceEEecCcceee-----EEEEEeccc-cccccccceeeeeHHHHhhCC--CCccceeccc---
Confidence            56899999999999999999987777654     457788999 999999999887544443222  2334443321   


Q ss_pred             CccccccCCCCCCCCceeeeeEEEEEEEEEc--cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccc
Q psy12482         89 SMASVYSGAGEGRYGSVIVKGEVEFGLQYNY--KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV  166 (419)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~G~i~~~l~y~~--~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~  166 (419)
                                  -..+.++.|+|++.+....  +...+...+++++++.+...  +.+|||+++....... ....+|++
T Consensus       108 ------------VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~--~~~dp~~~v~~~g~~~-~~~~~T~~  172 (800)
T KOG2059|consen  108 ------------VDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIIN--GQCDPFARVTLCGPSK-LKEKKTKV  172 (800)
T ss_pred             ------------cCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeC--CCCCcceEEeecccch-hhccccce
Confidence                        0112345899999999875  45678888889998888775  5699999999864332 23479999


Q ss_pred             ccCCCCceeccEEEEEcccCcc-------------cccEEEEEEEe-cCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482        167 KKHTLSPVFDEVLKFQLTLEDL-------------ECRTLWLSVWH-SDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ  232 (419)
Q Consensus       167 ~~~t~nP~wne~f~f~v~~~~l-------------~~~~l~i~v~d-~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~  232 (419)
                      ++.|.+|.|||.|.|.+..+.-             ....|++.+|+ .+....+.|+|++.+++..+........||-|+
T Consensus       173 ~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lq  252 (800)
T KOG2059|consen  173 KKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQ  252 (800)
T ss_pred             eeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEe
Confidence            9999999999999999876510             12368899998 455556999999999999887777889999998


Q ss_pred             cccchhhh-hhccccceEEEEEEeCC
Q psy12482        233 ERSEILDE-LICSKGELIIGLKFVPP  257 (419)
Q Consensus       233 ~~~~~~~~-~~~~~G~l~l~l~~~~~  257 (419)
                      +....... ..+..|.+++.++|...
T Consensus       253 p~~~g~~~~~~~~lGslrl~v~y~~D  278 (800)
T KOG2059|consen  253 PRPNGEKSSDGGDLGSLRLNVTYTED  278 (800)
T ss_pred             cCCCcccCCCCCCccceeeeEEeeec
Confidence            87655443 36778999999999744

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.80  E-value=1.6e-18  Score=142.89  Aligned_cols=127  Identities=21%  Similarity=0.312  Sum_probs=101.3

Q ss_pred             EEEEEEeecC--CCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC------cccccEEEE
Q psy12482        124 LEIHVKQCKD--LAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE------DLECRTLWL  195 (419)
Q Consensus       124 L~v~v~~a~~--L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~------~l~~~~l~i  195 (419)
                      ..++|..|++  |+..+.. +.+||||++++...+....+.||+++++|+||+|||+|.|.|...      .+....|.|
T Consensus         4 ~el~i~~~~~~~l~~~~~~-~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~   82 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNP-KDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF   82 (155)
T ss_pred             eEEEEEEeeccccCCCcCC-CCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence            3455556666  6777765 789999999985334445689999999999999999999999765      355678999


Q ss_pred             EEEecCCC-CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        196 SVWHSDMF-GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       196 ~v~d~~~~-~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      +|||++.+ ++|++||++.++|+.+........|++|......      .-|+|.+.++...+
T Consensus        83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~------~Gg~l~v~ir~r~p  139 (155)
T cd08690          83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKA------TGGKLEVKVRLREP  139 (155)
T ss_pred             EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCC------cCCEEEEEEEecCC
Confidence            99999876 5799999999999998877778889998754332      23999999988654

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.79  E-value=3e-19  Score=141.85  Aligned_cols=87  Identities=16%  Similarity=0.321  Sum_probs=74.3

Q ss_pred             ceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccC-CCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482        274 GSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKR-STSPQWNHTVVYRDVSLEELSERCLELTVWDHD  352 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~-t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~  352 (419)
                      |.|+|+|++|++|+..+.+++||||++.+.    . .+++|+++.+ +.||+|||+|.|+ +...   ...|.|+|||+|
T Consensus         2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg----~-~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~d   72 (121)
T cd04016           2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVG----H-AVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDER   72 (121)
T ss_pred             cEEEEEEEEccCCCcCCCCCCCceEEEEEC----C-EEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeCC
Confidence            789999999999988774499999999993    2 3578999876 7999999999997 5432   245999999999


Q ss_pred             CCCCCceeEEEEEeCCC
Q psy12482        353 RLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       353 ~~~~~~~lG~~~i~l~~  369 (419)
                      .+++|++||.+.|++..
T Consensus        73 ~~~~dd~iG~~~i~l~~   89 (121)
T cd04016          73 AFTMDERIAWTHITIPE   89 (121)
T ss_pred             CCcCCceEEEEEEECch
Confidence            99999999999999964

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.79  E-value=5.5e-19  Score=139.63  Aligned_cols=107  Identities=26%  Similarity=0.406  Sum_probs=90.4

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEEec
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWHS  200 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d~  200 (419)
                      |.|+|+|++|++|+..+...+.+||||+|++.+.+  ...++|++++++.||+|||+|.|.+...++ ....|.|+|||+
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~   78 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDS   78 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeC
Confidence            57999999999999988642679999999997654  236899999999999999999998766544 346899999999


Q ss_pred             CCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        201 DMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      +.++++++||++.+++.++.   ....|+++..
T Consensus        79 d~~~~dd~lG~~~i~l~~l~---~~~~~~~~~~  108 (111)
T cd04041          79 DRFTADDRLGRVEIDLKELI---EDRNWMGRRE  108 (111)
T ss_pred             CCCCCCCcceEEEEEHHHHh---cCCCCCcccc
Confidence            99999999999999999976   4457888764

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>KOG1013|consensus

Probab=99.79  E-value=1.2e-19  Score=160.50  Aligned_cols=206  Identities=25%  Similarity=0.292  Sum_probs=157.2

Q ss_pred             CccccccCcceeeecccCCCCcccceeeeceeeceeeccccccccCCCCcCcccccccCccCCcccccccccccccCCcc
Q psy12482          1 LLARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNK   80 (419)
Q Consensus         1 ~~~~~k~~k~kT~v~~~t~nP~wnE~f~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~   80 (419)
                      ||+..|..+.+|++..+++||.|||+-.+..+.+..+-..... ..+.|-+.+.+....|+.-+.+..+.....-....+
T Consensus       123 lpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~R-k~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~c  201 (362)
T KOG1013|consen  123 LPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLR-KVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNIC  201 (362)
T ss_pred             ccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhh-eeeccCcccccccCcccchhhhhccChhhcchhhhh
Confidence            6888999999999999999999999988876666555433333 446677777777777774433333221111000000


Q ss_pred             cccccccCCccccccCCCCCCCCceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC
Q psy12482         81 SLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG  160 (419)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~  160 (419)
                        +.   ..++     .........+.+|+|.+++.|......|.|.+++|..|..+|.+ +.+||||+.++.++....-
T Consensus       202 --l~---~~lp-----~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsn-g~sDpyvS~~l~pdv~~~f  270 (362)
T KOG1013|consen  202 --LE---KSLP-----SERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSN-GYSDPYVSQRLSPDVGKKF  270 (362)
T ss_pred             --hh---ccCC-----cccccccchhhccceeeeeccCcCCCceEEEEEEeeeeeccccC-CCCCccceeecCCCcchhh
Confidence              00   0000     01111222355899999999999999999999999999999998 9999999999998887777


Q ss_pred             eeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcc
Q psy12482        161 KRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN  218 (419)
Q Consensus       161 ~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~  218 (419)
                      ++||.+.+++.+|+||+.|.|.+...+|....+.|.|||++..+..+++|.+..++-.
T Consensus       271 kkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r  328 (362)
T KOG1013|consen  271 KKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR  328 (362)
T ss_pred             cccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccccc
Confidence            8999999999999999999999999999999999999999987789999998877643

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.79  E-value=1.3e-18  Score=140.11  Aligned_cols=116  Identities=28%  Similarity=0.434  Sum_probs=97.7

Q ss_pred             CEEEEEEEeecCCCCCCCC-----CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEE
Q psy12482        122 GALEIHVKQCKDLAPVDTK-----RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLS  196 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~-----~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~  196 (419)
                      |.|+|+|++|++|+..+..     .+.+||||++++..     ..++|++++++.||.|||+|.|.+...  ....|.|+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~~P~W~e~f~~~v~~~--~~~~l~i~   73 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-----QTFKSKVIKENLNPKWNEVYEAVVDEV--PGQELEIE   73 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-----EeEEccccCCCCCCcccceEEEEeCCC--CCCEEEEE
Confidence            5799999999999988742     26799999999962     468999999999999999999987543  34589999


Q ss_pred             EEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        197 VWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       197 v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      |||++.. ++++||++.+++.++........|++|.+.         ..|+|++.+.|
T Consensus        74 v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~---------~~G~~~~~~~~  121 (121)
T cd08391          74 LFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV---------KSGRLHLKLEW  121 (121)
T ss_pred             EEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC---------CCceEEEEEeC
Confidence            9999987 899999999999998776677899999764         23999988764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.79  E-value=2e-18  Score=140.93  Aligned_cols=107  Identities=32%  Similarity=0.632  Sum_probs=92.5

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|.|++.|.+                 +.|+|+|++|+||+..+.. .+||||+|.+.+......+++|++++++.||
T Consensus         1 ~g~~~~~~~~~~-----------------~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P   63 (131)
T cd04026           1 RGRIYLKISVKD-----------------NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNP   63 (131)
T ss_pred             CcEEEEEEEECC-----------------CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCC
Confidence            499999999974                 7899999999999988877 8999999999765545677999999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      .|||+|.|+ +...+ ....|.|+|||++..+++++||++.++++++
T Consensus        64 ~wne~f~~~-~~~~~-~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l  108 (131)
T cd04026          64 VWNETFTFD-LKPAD-KDRRLSIEVWDWDRTTRNDFMGSLSFGVSEL  108 (131)
T ss_pred             CccceEEEe-CCchh-cCCEEEEEEEECCCCCCcceeEEEEEeHHHh
Confidence            999999996 65433 2456999999999988999999999999763

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.79  E-value=2e-18  Score=141.47  Aligned_cols=122  Identities=27%  Similarity=0.464  Sum_probs=97.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc-----Ccc--cccEEEE
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL-----EDL--ECRTLWL  195 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~-----~~l--~~~~l~i  195 (419)
                      +|+|+|++|++|+..+.. |.+||||+|++.     ..+++|++++++.||.|||+|.|.+..     +++  ....|.|
T Consensus         2 ~l~v~V~~a~~L~~~d~~-g~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v   75 (135)
T cd04017           2 QLRAYIYQARDLLAADKS-GLSDPFARVSFL-----NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVV   75 (135)
T ss_pred             EEEEEEEEeecCcCCCCC-CCCCCEEEEEEC-----CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEE
Confidence            689999999999999987 899999999996     336899999999999999999997421     112  1247999


Q ss_pred             EEEecCCCCCCceeEEEEEe-Ccccc---cCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        196 SVWHSDMFGRNDFLGEVMMS-LENKV---FDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       196 ~v~d~~~~~~~~~iG~~~~~-l~~~~---~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      +|||++..+++++||++.+. +..+.   ...+..+|++|.....       ..|+|++++.+.+.
T Consensus        76 ~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~-------~~Geil~~~~~~~~  134 (135)
T cd04017          76 ELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQ-------SAGELLAAFELIEV  134 (135)
T ss_pred             EEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCC-------chhheeEEeEEEEe
Confidence            99999999999999999873 33322   2456789999975432       45999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.78  E-value=2.1e-18  Score=139.99  Aligned_cols=119  Identities=25%  Similarity=0.360  Sum_probs=100.0

Q ss_pred             EEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCc
Q psy12482        128 VKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND  207 (419)
Q Consensus       128 v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~  207 (419)
                      |++|++|+.  .. +.+||||+|++.     ..+++|++++++.||+|||+|.|.+.........|.|+|||++..++++
T Consensus         2 vi~a~~L~~--~~-g~~Dpyv~v~~~-----~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~   73 (127)
T cd08373           2 VVSLKNLPG--LK-GKGDRIAKVTFR-----GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNR   73 (127)
T ss_pred             eEEeeCCcc--cC-CCCCCEEEEEEC-----CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCc
Confidence            688999998  44 789999999995     2357999999999999999999998654345669999999999988999


Q ss_pred             eeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCCC
Q psy12482        208 FLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPED  259 (419)
Q Consensus       208 ~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~  259 (419)
                      +||++.++++++........|++|.+....     ...|+|.++++|.|...
T Consensus        74 ~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~-----~~~~~l~l~~~~~~~~~  120 (127)
T cd08373          74 LIGSATVSLQDLVSEGLLEVTEPLLDSNGR-----PTGATISLEVSYQPPDG  120 (127)
T ss_pred             eEEEEEEEhhHcccCCceEEEEeCcCCCCC-----cccEEEEEEEEEeCCCC
Confidence            999999999998877777889999755432     23499999999999854

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.78  E-value=1.3e-18  Score=137.24  Aligned_cols=88  Identities=28%  Similarity=0.483  Sum_probs=78.6

Q ss_pred             EEEEEeccccccccCC-C-CCCcEEEEEEeCCCCCcceeecccccCCCCCcc-ccEEEEcccCccccccCeEEEEEEECC
Q psy12482        276 LHVLIKEAKSLCPVKS-N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW-NHTVVYRDVSLEELSERCLELTVWDHD  352 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~-~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~w-ne~f~f~~v~~~~~~~~~l~i~V~d~~  352 (419)
                      |.|+|++|+||+.++. . .+||||+|.+..     .+++|+++++++||+| ||.|.|. ++..++.+..|.|+|||++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-----~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d   74 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-----TTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHD   74 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC-----eeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCC
Confidence            5799999999999884 4 899999999842     6689999999999999 9999996 8776676778999999999


Q ss_pred             CCCCCceeEEEEEeCCC
Q psy12482        353 RLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       353 ~~~~~~~lG~~~i~l~~  369 (419)
                      .++++++||++.++++.
T Consensus        75 ~~~~~~~iG~~~~~l~~   91 (110)
T cd08688          75 TYSANDAIGKVYIDLNP   91 (110)
T ss_pred             CCCCCCceEEEEEeHHH
Confidence            99999999999999965

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.78  E-value=3.7e-18  Score=137.02  Aligned_cols=118  Identities=24%  Similarity=0.427  Sum_probs=98.0

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      |.|.|+|++|++|+..+.. +.+||||++++..     ...+|++++++.||.|||+|.|.+..  + ...|.|+|||++
T Consensus         1 g~l~v~v~~a~~L~~~~~~-~~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~~~~~~--~-~~~l~~~v~d~~   71 (119)
T cd08377           1 GFLQVKVIRASGLAAADIG-GKSDPFCVLELVN-----ARLQTHTIYKTLNPEWNKIFTFPIKD--I-HDVLEVTVYDED   71 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCC-CCCCcEEEEEECC-----EeeecceecCCcCCccCcEEEEEecC--c-CCEEEEEEEECC
Confidence            5799999999999998877 7899999999952     24799999999999999999998753  2 358999999999


Q ss_pred             CCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        202 MFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       202 ~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      ..+++++||++.+++.++..  ....|+.|.+....    ....|+|.+++.+
T Consensus        72 ~~~~~~~iG~~~~~l~~~~~--~~~~~~~l~~~~~~----~~~~G~i~l~~~~  118 (119)
T cd08377          72 KDKKPEFLGKVAIPLLSIKN--GERKWYALKDKKLR----TRAKGSILLEMDV  118 (119)
T ss_pred             CCCCCceeeEEEEEHHHCCC--CCceEEECcccCCC----CceeeEEEEEEEe
Confidence            88899999999999988653  34689999765432    2346999998876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.78  E-value=3e-18  Score=138.69  Aligned_cols=122  Identities=24%  Similarity=0.336  Sum_probs=98.8

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      |.|+|+|++|++|+..+...+.+||||++++..+   ...++|++++++.||.|||.|.|.+..   ....|.|+|||++
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~~---~~~~l~~~v~d~~   75 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVNS---LTEPLNLTVYDFN   75 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeCC---CCCEEEEEEEecC
Confidence            6799999999999976533367899999999743   246899999999999999999999862   3558999999999


Q ss_pred             CCCCCceeEEEEEeCcccccCCCCCc-eecCccccchhhhhhccccceEEEEEEeC
Q psy12482        202 MFGRNDFLGEVMMSLENKVFDDPSPK-CYPLQERSEILDELICSKGELIIGLKFVP  256 (419)
Q Consensus       202 ~~~~~~~iG~~~~~l~~~~~~~~~~~-w~~L~~~~~~~~~~~~~~G~l~l~l~~~~  256 (419)
                      ..+++++||++.+++.++........ |+.+...       .+..|+|+++++|.|
T Consensus        76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~-------~k~~G~i~~~l~~~p  124 (124)
T cd04044          76 DKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRN-------GKPVGELNYDLRFFP  124 (124)
T ss_pred             CCCCCceeEEEEEEHHHhccCccccCcchhhhcC-------CccceEEEEEEEeCC
Confidence            98899999999999999876655543 4445422       234599999999986

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.78  E-value=4.5e-18  Score=142.57  Aligned_cols=124  Identities=20%  Similarity=0.385  Sum_probs=100.2

Q ss_pred             CCEEEEEEEeecCCCCCCC-----------------------------CCCCCCcEEEEEEeCCCCCCCeeecccccCCC
Q psy12482        121 QGALEIHVKQCKDLAPVDT-----------------------------KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTL  171 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~-----------------------------~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~  171 (419)
                      .|.|.|+|.+|++|+.+|.                             ..|.+||||+|.+...    ...+|++++++.
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~----~~~rT~v~~~~~   81 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGA----RVARTRVIENSE   81 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCe----EeeEEEEeCCCC
Confidence            4789999999999999872                             3367899999999521    246999999999


Q ss_pred             CceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEE
Q psy12482        172 SPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIG  251 (419)
Q Consensus       172 nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~  251 (419)
                      ||+|||+|.|.+...   ...|.|.|||.+..+ +++||++.++++++..+.....|++|......   .....|+|+++
T Consensus        82 nP~WnE~F~~~~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~---~~~~~~~l~v~  154 (158)
T cd04015          82 NPVWNESFHIYCAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGK---PPKPGAKIRVS  154 (158)
T ss_pred             CCccceEEEEEccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCC---CCCCCCEEEEE
Confidence            999999999987542   347999999999875 68999999999998877788899999765322   12334899999


Q ss_pred             EEEe
Q psy12482        252 LKFV  255 (419)
Q Consensus       252 l~~~  255 (419)
                      +.|.
T Consensus       155 ~~f~  158 (158)
T cd04015         155 LQFT  158 (158)
T ss_pred             EEEC
Confidence            9883

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.78  E-value=7.1e-18  Score=136.77  Aligned_cols=119  Identities=24%  Similarity=0.399  Sum_probs=98.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM  202 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~  202 (419)
                      .|+|+|++|++|+..+.. +.+||||++++...+  ....+|++++++.||.|||+|.|.+...  ....|.|+|||++.
T Consensus         2 ~~~V~v~~a~~L~~~~~~-~~~Dpyv~v~~~~~~--~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~   76 (126)
T cd04043           2 LFTIRIVRAENLKADSSN-GLSDPYVTLVDTNGK--RRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSF   76 (126)
T ss_pred             EEEEEEEEeECCCCCCCC-CCCCceEEEEECCCC--eeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCC
Confidence            589999999999999876 899999999875432  2357999999999999999999998664  34589999999998


Q ss_pred             CCCCceeEEEEEeCcccccC---CCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        203 FGRNDFLGEVMMSLENKVFD---DPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       203 ~~~~~~iG~~~~~l~~~~~~---~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      .+++++||++.++|.++...   .....|++|.+.           |+|++.+.+.-.
T Consensus        77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~~-----------g~i~l~~~~~~~  123 (126)
T cd04043          77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDTQ-----------GRLLLRVSMEGE  123 (126)
T ss_pred             CCCCceEEEEEEecCHHHcCCCCCCceEEEEcCCC-----------CeEEEEEEEeee
Confidence            88999999999999875433   245689999752           999999888643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.77  E-value=4.4e-18  Score=136.59  Aligned_cols=118  Identities=25%  Similarity=0.258  Sum_probs=96.6

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |.|.|++|++|+..+.. |.+||||++.+..    ....+|++++++.||+|||.|.|.+...   ...|.|.|||++..
T Consensus         2 l~v~vi~a~~L~~~d~~-g~~DPYv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~   73 (121)
T cd04054           2 LYIRIVEGKNLPAKDIT-GSSDPYCIVKVDN----EVIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTL   73 (121)
T ss_pred             EEEEEEEeeCCcCCCCC-CCCCceEEEEECC----EeeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCC
Confidence            78999999999999987 8899999999842    1246999999999999999999987642   35899999999999


Q ss_pred             CCCceeEEEEEeCcccccCC-CCCceecCccccchhhhhhccccceEEEEE
Q psy12482        204 GRNDFLGEVMMSLENKVFDD-PSPKCYPLQERSEILDELICSKGELIIGLK  253 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~~~~-~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~  253 (419)
                      +++++||++.++++++.... ....|++|.+....    ....|+|.+.+.
T Consensus        74 ~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~----~~~~G~i~l~~~  120 (121)
T cd04054          74 SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD----EEVQGEIHLELS  120 (121)
T ss_pred             CCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC----CccccEEEEEEE
Confidence            99999999999998875432 36889999764322    234599988764

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.77  E-value=3.6e-18  Score=139.80  Aligned_cols=111  Identities=38%  Similarity=0.612  Sum_probs=95.4

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC-------------cccc
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE-------------DLEC  190 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~-------------~l~~  190 (419)
                      |+|.|++|++|+.+ .. +.+||||+|++... ....+++|++++++.||.|||+|.|.+...             ++..
T Consensus         1 L~V~Vi~A~~L~~~-~~-g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~   77 (137)
T cd08675           1 LSVRVLECRDLALK-SN-GTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEK   77 (137)
T ss_pred             CEEEEEEccCCCcc-cC-CCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccc
Confidence            57999999999988 55 88999999999843 234578999999999999999999997653             4466


Q ss_pred             cEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccch
Q psy12482        191 RTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEI  237 (419)
Q Consensus       191 ~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~  237 (419)
                      ..|.|+|||++..+++++||++.+++.++........|++|.+....
T Consensus        78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~  124 (137)
T cd08675          78 SELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP  124 (137)
T ss_pred             cEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence            79999999999888999999999999998777778999999887644

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=4.8e-18  Score=132.89  Aligned_cols=101  Identities=24%  Similarity=0.423  Sum_probs=84.7

Q ss_pred             EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482        276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL  354 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~  354 (419)
                      |.|+|++|+||+..+.. .+||||+|.+..     .+++|++++++.||+|||.|.|. +..  .....|.|+|+|++. 
T Consensus         2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~Wne~f~f~-v~~--~~~~~l~v~v~d~~~-   72 (105)
T cd04050           2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK-----TTQKSKVKERTNNPVWEEGFTFL-VRN--PENQELEIEVKDDKT-   72 (105)
T ss_pred             EEEEEeeecCCCCcccCCCCCcEEEEEECC-----EEEeCccccCCCCCcccceEEEE-eCC--CCCCEEEEEEEECCC-
Confidence            78999999999998877 999999999942     56899999999999999999997 543  233569999999886 


Q ss_pred             CCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCC
Q psy12482        355 TSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSS  410 (419)
Q Consensus       355 ~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~  410 (419)
                        +++||++.|+|+                       ++...|+..+.+|++|..+
T Consensus        73 --~~~iG~~~i~l~-----------------------~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          73 --GKSLGSLTLPLS-----------------------ELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             --CCccEEEEEEHH-----------------------HhhccccceeeeeEecCCC
Confidence              789999999995                       4556666778888888765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.77  E-value=6.9e-18  Score=137.84  Aligned_cols=117  Identities=28%  Similarity=0.423  Sum_probs=98.3

Q ss_pred             CCEEEEEEEeecCCCCCCCC---------CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCccccc
Q psy12482        121 QGALEIHVKQCKDLAPVDTK---------RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECR  191 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~---------~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~  191 (419)
                      .|.|+|+|++|++|...+..         .+.+||||++++..    ....+|++++++.||.|||+|.|.+..    ..
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~----~~~~kT~~~~~t~~P~Wne~f~~~v~~----~~   74 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD----THIGKTSTKPKTNSPVWNEEFTTEVHN----GR   74 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC----EEEeEEeEcCCCCCCCcceeEEEEcCC----CC
Confidence            46899999999999988752         15789999999952    124689999999999999999999863    45


Q ss_pred             EEEEEEEecCCCCCCceeEEEEEeCccccc--CCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482        192 TLWLSVWHSDMFGRNDFLGEVMMSLENKVF--DDPSPKCYPLQERSEILDELICSKGELIIGLKFVP  256 (419)
Q Consensus       192 ~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~--~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~  256 (419)
                      .|.|.|||.+..+++++||++.++|.++..  ......|++|.+.           |+|++.+.|..
T Consensus        75 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~-----------G~l~l~~~~~~  130 (132)
T cd04014          75 NLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEPQ-----------GKLHVKIELKG  130 (132)
T ss_pred             EEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccCC-----------cEEEEEEEEec
Confidence            899999999988889999999999999776  4567899999742           99999999865

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=3.1e-18  Score=133.94  Aligned_cols=100  Identities=21%  Similarity=0.367  Sum_probs=86.0

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |.|+|++|++|+..+.. +.+||||++++.     ..+++|++++++.||+|||.|.|.+....  ...|.|+|||.+. 
T Consensus         2 L~V~v~~A~~L~~~~~~-~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~v~~~~--~~~l~v~v~d~~~-   72 (105)
T cd04050           2 LFVYLDSAKNLPLAKST-KEPSPYVELTVG-----KTTQKSKVKERTNNPVWEEGFTFLVRNPE--NQELEIEVKDDKT-   72 (105)
T ss_pred             EEEEEeeecCCCCcccC-CCCCcEEEEEEC-----CEEEeCccccCCCCCcccceEEEEeCCCC--CCEEEEEEEECCC-
Confidence            78999999999998876 899999999996     24789999999999999999999987643  3489999999875 


Q ss_pred             CCCceeEEEEEeCcccccCC--CCCceecCccc
Q psy12482        204 GRNDFLGEVMMSLENKVFDD--PSPKCYPLQER  234 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~~~~--~~~~w~~L~~~  234 (419)
                        +++||++.++|.++....  ....||+|...
T Consensus        73 --~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~  103 (105)
T cd04050          73 --GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS  103 (105)
T ss_pred             --CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence              789999999999876543  46789999765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.76  E-value=2.1e-18  Score=136.31  Aligned_cols=95  Identities=26%  Similarity=0.404  Sum_probs=81.1

Q ss_pred             ceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcccc-ccCeEEEEEEE
Q psy12482        274 GSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEEL-SERCLELTVWD  350 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~-~~~~l~i~V~d  350 (419)
                      |.|+|+|++|+||+..+..  .+||||+|.+...+  ...++|+++++++||+|||.|.|. +...++ ....|.|+|||
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d   77 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWD   77 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEe
Confidence            6899999999999998864  89999999986543  346899999999999999999996 554443 34679999999


Q ss_pred             CCCCCCCceeEEEEEeCCCCC
Q psy12482        351 HDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      ++.++++++||++.++++++.
T Consensus        78 ~d~~~~dd~lG~~~i~l~~l~   98 (111)
T cd04041          78 SDRFTADDRLGRVEIDLKELI   98 (111)
T ss_pred             CCCCCCCCcceEEEEEHHHHh
Confidence            999999999999999998764

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.76  E-value=4.6e-18  Score=133.01  Aligned_cols=96  Identities=25%  Similarity=0.400  Sum_probs=81.0

Q ss_pred             CEEEEEEEeecCCCCCCCC---CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEE
Q psy12482        122 GALEIHVKQCKDLAPVDTK---RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVW  198 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~---~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~  198 (419)
                      |.|.|+|++|++|+..+..   ++.+||||++++.     ..++||++++++.||+|||.|.|.+...+. ...|.|.||
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~   74 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RRVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVL   74 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CEeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEE
Confidence            6799999999999987632   1358999999994     336799999999999999999999865443 458999999


Q ss_pred             ecCCCCCCceeEEEEEeCcccccCC
Q psy12482        199 HSDMFGRNDFLGEVMMSLENKVFDD  223 (419)
Q Consensus       199 d~~~~~~~~~iG~~~~~l~~~~~~~  223 (419)
                      |++..+++++||++.++|+++....
T Consensus        75 D~d~~~~dd~IG~~~l~L~~l~~~~   99 (108)
T cd04039          75 DKDKFSFNDYVATGSLSVQELLNAA   99 (108)
T ss_pred             ECCCCCCCcceEEEEEEHHHHHhhC
Confidence            9999999999999999999875443

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.76  E-value=8e-18  Score=135.52  Aligned_cols=118  Identities=19%  Similarity=0.288  Sum_probs=95.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |+|+|++|++|+..+.. +.+||||++++.+    ...++|++++++.||.|||+|.|.+..    ...|.|+|||++.+
T Consensus         2 l~v~v~~A~~L~~~~~~-~~~dpyv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~   72 (123)
T cd08382           2 VRLTVLCADGLAKRDLF-RLPDPFAVITVDG----GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKF   72 (123)
T ss_pred             eEEEEEEecCCCccCCC-CCCCcEEEEEECC----ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCC
Confidence            78999999999999887 8999999999942    336899999999999999999999865    45999999999988


Q ss_pred             CC--CceeEEEEEeCcccccCC-CCCceecCccccchhhhhhccccceEEEE
Q psy12482        204 GR--NDFLGEVMMSLENKVFDD-PSPKCYPLQERSEILDELICSKGELIIGL  252 (419)
Q Consensus       204 ~~--~~~iG~~~~~l~~~~~~~-~~~~w~~L~~~~~~~~~~~~~~G~l~l~l  252 (419)
                      ++  +++||++.+++.++.... ....|++|.+.....  .....|+|.+.+
T Consensus        73 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~--~~~~~G~v~~~~  122 (123)
T cd08382          73 KKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSD--NLSVRGKIVVSL  122 (123)
T ss_pred             CCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCC--CceEeeEEEEEe
Confidence            75  579999999999976444 347799996655431  233468887764

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.76  E-value=7.3e-19  Score=145.09  Aligned_cols=115  Identities=20%  Similarity=0.371  Sum_probs=86.6

Q ss_pred             eEEEEEeccccccccCCC---------------CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcccc
Q psy12482        275 SLHVLIKEAKSLCPVKSN---------------TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEEL  339 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~---------------~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~  339 (419)
                      .|.|+|++|++|+.+|.+               .+||||+|.+.+     .+.+|++++++.||+|||.|.|+ +.....
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-----~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~   74 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-----QKVKTSVKKNSYNPEWNEQIVFP-EMFPPL   74 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-----EeeecceEcCCCCCCcceEEEEE-eeCCCc
Confidence            478999999999998733               489999999842     24689999999999999999996 433333


Q ss_pred             ccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCce
Q psy12482        340 SERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFW  400 (419)
Q Consensus       340 ~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~  400 (419)
                      . ..|.|+|||+|..++|++||.+.|++.++...+. ..|+...|+   +|..|...|...
T Consensus        75 ~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~-~~~lp~~~p---~W~~lyg~~~~~  130 (151)
T cd04018          75 C-ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGD-EGFLPTFGP---SFVNLYGSPREY  130 (151)
T ss_pred             C-CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCc-cccCCccCc---eEEEeecCcccc
Confidence            3 4599999999999999999999999998755442 233333332   455555555543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1030|consensus

Probab=99.76  E-value=3.1e-18  Score=138.61  Aligned_cols=94  Identities=35%  Similarity=0.482  Sum_probs=84.5

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      -|.|+|.|.+|.||..+|.. +++||||.+.++     .++.||+++++++||+|||.|.|.+..   ....|.+.|||+
T Consensus         5 vGLL~v~v~~g~~L~~rD~~-~sSDPyVVl~lg-----~q~lkT~~v~~n~NPeWNe~ltf~v~d---~~~~lkv~VyD~   75 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFL-GSSDPYVVLELG-----NQKLKTRVVYKNLNPEWNEELTFTVKD---PNTPLKVTVYDK   75 (168)
T ss_pred             ceEEEEEEEeecCeeeeccc-cCCCCeEEEEEC-----CeeeeeeeecCCCCCcccceEEEEecC---CCceEEEEEEeC
Confidence            47899999999999999986 899999999997     557899999999999999999999877   355899999999


Q ss_pred             CCCCCCceeEEEEEeCcccccCC
Q psy12482        201 DMFGRNDFLGEVMMSLENKVFDD  223 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~~~~  223 (419)
                      |.+++|++||.++|+|..+....
T Consensus        76 D~fs~dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   76 DTFSSDDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             CCCCcccccceeeeccHHHHHHh
Confidence            99999999999999998865433

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.76  E-value=3.7e-18  Score=136.53  Aligned_cols=98  Identities=21%  Similarity=0.336  Sum_probs=78.9

Q ss_pred             eEEEEEecccc---ccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEE
Q psy12482        275 SLHVLIKEAKS---LCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWD  350 (419)
Q Consensus       275 ~l~v~v~~a~~---L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d  350 (419)
                      .|.|+|++|+|   |+.++.. .+||||+|.+.     ..+.+|+++++++||+|||+|.|. +.  +.. ..|.|+|||
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g-----~~~~rTk~~~~~~nP~WnE~f~f~-v~--~~~-~~l~v~V~d   71 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG-----PKWVRTRTVEDSSNPRWNEQYTWP-VY--DPC-TVLTVGVFD   71 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEEC-----CEEeEcCcccCCCCCcceeEEEEE-ec--CCC-CEEEEEEEE
Confidence            38899999999   8888877 99999999983     235799999999999999999996 42  222 369999999


Q ss_pred             CCCCC------CCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        351 HDRLT------SNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       351 ~~~~~------~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      ++..+      +|++||++.|+++.+..+.....||.
T Consensus        72 ~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~  108 (126)
T cd08379          72 NSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYP  108 (126)
T ss_pred             CCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEE
Confidence            98873      89999999999987554444444444

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.75  E-value=3.6e-18  Score=133.60  Aligned_cols=92  Identities=20%  Similarity=0.312  Sum_probs=77.3

Q ss_pred             ceEEEEEeccccccccCCC-----CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEE
Q psy12482        274 GSLHVLIKEAKSLCPVKSN-----TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTV  348 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~-----~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V  348 (419)
                      |.|.|+|.+|++|++.+..     .+||||+|.+.     ..+++|++++++.||+|||.|.|+ +...+ ....|.|+|
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~~~kT~v~~~t~nPvWne~f~f~-v~~~~-~~~~L~~~V   73 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RRVFRTSWRRHTLNPVFNERLAFE-VYPHE-KNFDIQFKV   73 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CEeEeeeeecCCCCCcccceEEEE-EeCcc-CCCEEEEEE
Confidence            6899999999999987631     48999999983     245799999999999999999996 54333 235699999


Q ss_pred             EECCCCCCCceeEEEEEeCCCCCc
Q psy12482        349 WDHDRLTSNEFLGGIRLNLGHGKH  372 (419)
Q Consensus       349 ~d~~~~~~~~~lG~~~i~l~~~~~  372 (419)
                      ||++.++++++||++.|+|+.+..
T Consensus        74 ~D~d~~~~dd~IG~~~l~L~~l~~   97 (108)
T cd04039          74 LDKDKFSFNDYVATGSLSVQELLN   97 (108)
T ss_pred             EECCCCCCCcceEEEEEEHHHHHh
Confidence            999999999999999999987543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.75  E-value=2.6e-17  Score=133.16  Aligned_cols=123  Identities=24%  Similarity=0.397  Sum_probs=99.1

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      ...|+|+|++|++|...+.. |.+||||++.+.     ..+.+|++++++.||+|||.|.|.+..   ....|.|+|||+
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~-g~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~   72 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSG-GGADPYVIIKCE-----GESVRSPVQKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNS   72 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCC-CCcCccEEEEEC-----CEEEEeCccCCCCCCcccceEEEEecC---CCCEEEEEEEEC
Confidence            35799999999999998876 899999999985     236899999999999999999998654   256899999999


Q ss_pred             CCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        201 DMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      +.. ++++||++.+++.++  ......|++|......  ......|+|.+++.+.+.
T Consensus        73 ~~~-~d~~lG~~~~~l~~~--~~~~~~~~~l~~~~~~--~~~~~~G~i~~~~~~~~~  124 (126)
T cd04046          73 NLL-CDEFLGQATLSADPN--DSQTLRTLPLRKRGRD--AAGEVPGTISVKVTSSDD  124 (126)
T ss_pred             CCC-CCCceEEEEEecccC--CCcCceEEEcccCCCC--CCCCCCCEEEEEEEEccc
Confidence            877 489999999999874  3445578888643321  235677999998887654

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=1.3e-17  Score=135.06  Aligned_cols=115  Identities=24%  Similarity=0.436  Sum_probs=93.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM  202 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~  202 (419)
                      .|+|.|++|++|+..+.. +.+||||+|++.     ..+++|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus         2 ~L~V~vi~a~~L~~~d~~-g~~DPyv~v~~~-----~~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~   72 (127)
T cd04027           2 KISITVVCAQGLIAKDKT-GTSDPYVTVQVG-----KTKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDD   72 (127)
T ss_pred             eEEEEEEECcCCcCCCCC-CCcCcEEEEEEC-----CEeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCC
Confidence            689999999999999887 889999999985     2357999999999999999999987432   3489999999985


Q ss_pred             C-----------CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEE
Q psy12482        203 F-----------GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGL  252 (419)
Q Consensus       203 ~-----------~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l  252 (419)
                      .           +.+++||++.+++.++.  .....|+.|.+....    ....|+|.+++
T Consensus        73 ~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~----~~~~G~i~~~~  127 (127)
T cd04027          73 DIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDK----SAVSGAIRLHI  127 (127)
T ss_pred             CcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCC----CcEeEEEEEEC
Confidence            2           46899999999998763  445799999876532    34569998864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>KOG1030|consensus

Probab=99.75  E-value=2.4e-18  Score=139.27  Aligned_cols=90  Identities=27%  Similarity=0.448  Sum_probs=79.4

Q ss_pred             cceEEEEEeccccccccCC-CCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        273 KGSLHVLIKEAKSLCPVKS-NTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~-~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      .|-|+|.|.+|.||...|. +++||||.+.++.+     +.+|+++++++||+|||.|.|. +.  +.. ..|+++|||+
T Consensus         5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q-----~lkT~~v~~n~NPeWNe~ltf~-v~--d~~-~~lkv~VyD~   75 (168)
T KOG1030|consen    5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQ-----KLKTRVVYKNLNPEWNEELTFT-VK--DPN-TPLKVTVYDK   75 (168)
T ss_pred             ceEEEEEEEeecCeeeeccccCCCCeEEEEECCe-----eeeeeeecCCCCCcccceEEEE-ec--CCC-ceEEEEEEeC
Confidence            6899999999999999999 49999999999544     4889999999999999999997 43  333 4499999999


Q ss_pred             CCCCCCceeEEEEEeCCCCC
Q psy12482        352 DRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~~~  371 (419)
                      |.+++|++||.|+|++..+.
T Consensus        76 D~fs~dD~mG~A~I~l~p~~   95 (168)
T KOG1030|consen   76 DTFSSDDFMGEATIPLKPLL   95 (168)
T ss_pred             CCCCcccccceeeeccHHHH
Confidence            99999999999999998754

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.75  E-value=5.1e-18  Score=137.64  Aligned_cols=91  Identities=26%  Similarity=0.405  Sum_probs=78.1

Q ss_pred             eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccC-ccccccCeEEEEEEECC
Q psy12482        275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVS-LEELSERCLELTVWDHD  352 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~-~~~~~~~~l~i~V~d~~  352 (419)
                      +|+|+|++|++|++.+.. .+||||+|.+..     .+++|++++++.||+|||.|.|. +. ...+....|.|+|||++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~   74 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-----QKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDR   74 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-----EEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCC
Confidence            489999999999998877 899999999843     35799999999999999999997 54 33444567999999999


Q ss_pred             CCC-CCceeEEEEEeCCCCC
Q psy12482        353 RLT-SNEFLGGIRLNLGHGK  371 (419)
Q Consensus       353 ~~~-~~~~lG~~~i~l~~~~  371 (419)
                      .++ ++++||++.|+++++.
T Consensus        75 ~~~~~d~~lG~v~i~l~~l~   94 (127)
T cd04022          75 RSGRRRSFLGRVRISGTSFV   94 (127)
T ss_pred             CCcCCCCeeeEEEEcHHHcC
Confidence            886 8999999999998853

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.75  E-value=7.9e-18  Score=135.37  Aligned_cols=100  Identities=20%  Similarity=0.346  Sum_probs=82.7

Q ss_pred             eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482        275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR  353 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~  353 (419)
                      +|+|+|++|+||+..+.. .+||||++.+    +....++|++++++.||+|||.|.|. +.  .+. ..|.|+|||++.
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~----~~~~~~kT~~~~~t~nP~Wne~f~f~-v~--~~~-~~l~~~v~D~d~   72 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKY----GGKTVYKSKTIYKNLNPVWDEKFTLP-IE--DVT-QPLYIKVFDYDR   72 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEE----CCEEEEEeeeccCCCCCccceeEEEE-ec--CCC-CeEEEEEEeCCC
Confidence            589999999999999887 9999999998    33456899999999999999999996 43  333 569999999999


Q ss_pred             CCCCceeEEEEEeCCCCCcCCceeecccC
Q psy12482        354 LTSNEFLGGIRLNLGHGKHYSKLVDWMDS  382 (419)
Q Consensus       354 ~~~~~~lG~~~i~l~~~~~~~~~~~w~~~  382 (419)
                      .+++++||.+.|+++++..++....|+.+
T Consensus        73 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~L  101 (121)
T cd04042          73 GLTDDFMGSAFVDLSTLELNKPTEVKLKL  101 (121)
T ss_pred             CCCCcceEEEEEEHHHcCCCCCeEEEEEC
Confidence            99999999999999886544444444443

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.74  E-value=1.1e-17  Score=136.65  Aligned_cols=93  Identities=29%  Similarity=0.601  Sum_probs=81.0

Q ss_pred             CCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEE
Q psy12482        270 SAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTV  348 (419)
Q Consensus       270 ~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V  348 (419)
                      ....|.|+|+|++|++|+..+.. .+||||++.+.     ..+++|++++++.||.|||.|.|. +.  +.....|.|+|
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f~-v~--~~~~~~l~i~V   82 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQFF-VK--DLEQDVLCITV   82 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEEE-ec--CccCCEEEEEE
Confidence            34479999999999999999877 99999999983     235899999999999999999996 43  44456799999


Q ss_pred             EECCCCCCCceeEEEEEeCCCC
Q psy12482        349 WDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       349 ~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      ||++.++++++||++.|++.++
T Consensus        83 ~D~d~~~~d~~lG~~~i~l~~l  104 (136)
T cd08375          83 FDRDFFSPDDFLGRTEIRVADI  104 (136)
T ss_pred             EECCCCCCCCeeEEEEEEHHHh
Confidence            9999999999999999999774

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.74  E-value=1.8e-17  Score=136.92  Aligned_cols=106  Identities=28%  Similarity=0.462  Sum_probs=89.1

Q ss_pred             EccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCC------------------------CCeeecccccCCCCc
Q psy12482        118 NYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK------------------------AGKRKTRVKKHTLSP  173 (419)
Q Consensus       118 ~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~------------------------~~~~kT~~~~~t~nP  173 (419)
                      .+..+.|.|+|++|++|..++.. |.+||||+|.+.+....                        ...++|++++++.||
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP  102 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVN-GFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP  102 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCC-CCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence            45678899999999999999987 89999999999754321                        124789999999999


Q ss_pred             eeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecC
Q psy12482        174 VFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPL  231 (419)
Q Consensus       174 ~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L  231 (419)
                      .|||+|.|.+..  +....|.|+|||++    +++||++.++++++. ......||+|
T Consensus       103 ~WnE~F~f~v~~--~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L  153 (153)
T cd08676         103 VWNETFRFEVED--VSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL  153 (153)
T ss_pred             ccccEEEEEecc--CCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence            999999999754  34568999999987    799999999999987 4567899986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.74  E-value=2.6e-17  Score=129.70  Aligned_cols=102  Identities=18%  Similarity=0.312  Sum_probs=83.6

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      +.|.|+|++|++|+..+    ..||||+|.++     ..+.+|++.++ .||.|||.|.|.+..  .. ..|.|+|||++
T Consensus         2 ~~L~V~Vv~Ar~L~~~~----~~dPYV~Ik~g-----~~k~kT~v~~~-~nP~WnE~F~F~~~~--~~-~~L~v~V~dkd   68 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD----KFNTYVTLKVQ-----NVKSTTIAVRG-SQPCWEQDFMFEINR--LD-LGLVIELWNKG   68 (127)
T ss_pred             ceEEEEEEEeeCCCCCC----CCCCeEEEEEC-----CEEeEeeECCC-CCCceeeEEEEEEcC--CC-CEEEEEEEeCC
Confidence            57999999999997643    45899999995     34678888877 599999999999854  23 35999999998


Q ss_pred             CCCCCceeEEEEEeCcccccCCCC--CceecCccccch
Q psy12482        202 MFGRNDFLGEVMMSLENKVFDDPS--PKCYPLQERSEI  237 (419)
Q Consensus       202 ~~~~~~~iG~~~~~l~~~~~~~~~--~~w~~L~~~~~~  237 (419)
                      .+ +|++||++.|+|+++..+...  .+||+|.+....
T Consensus        69 ~~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~  105 (127)
T cd08394          69 LI-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEVNM  105 (127)
T ss_pred             Cc-CCCceEEEEEEhHHcccCCCCCCCccEecChHHhc
Confidence            66 899999999999998766555  789999865443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.74  E-value=1.1e-17  Score=132.23  Aligned_cols=103  Identities=22%  Similarity=0.290  Sum_probs=86.1

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc--CcccccEEEEEEE
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL--EDLECRTLWLSVW  198 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~--~~l~~~~l~i~v~  198 (419)
                      .-.|+|+|++|++|+    . +.+||||++++.     .++++|++++++.||.|||+|.|.+..  .++.+..|.|+||
T Consensus         3 ~~~l~V~v~~a~~L~----~-~~~dpyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~   72 (111)
T cd04011           3 DFQVRVRVIEARQLV----G-GNIDPVVKVEVG-----GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY   72 (111)
T ss_pred             cEEEEEEEEEcccCC----C-CCCCCEEEEEEC-----CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence            457999999999998    3 789999999997     235789999999999999999998643  3455679999999


Q ss_pred             ecCCCCCCceeEEEEEeCcccccCC---CCCceecCcc
Q psy12482        199 HSDMFGRNDFLGEVMMSLENKVFDD---PSPKCYPLQE  233 (419)
Q Consensus       199 d~~~~~~~~~iG~~~~~l~~~~~~~---~~~~w~~L~~  233 (419)
                      |++.++++++||++.++|+++....   -...|++|..
T Consensus        73 d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          73 DSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            9999889999999999999875443   2467998864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.73  E-value=9.1e-18  Score=139.21  Aligned_cols=89  Identities=28%  Similarity=0.338  Sum_probs=75.8

Q ss_pred             eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccC-CCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482        275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKR-STSPQWNHTVVYRDVSLEELSERCLELTVWDHD  352 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~-t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~  352 (419)
                      .|+|+|++|+||++++.+ .+||||+|.+.+     .+++|+++.+ +.||+|||.|.|. ++  +.....|.|+|+|++
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-----~~~kTk~~~~~t~nP~WNE~F~f~-v~--~~~~~~l~v~V~d~~   72 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-----QVLRTRPSQTRNGNPSWNEELMFV-AA--EPFEDHLILSVEDRV   72 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-----EEeeeEeccCCCCCCcccCcEEEE-ec--CccCCeEEEEEEEec
Confidence            389999999999999988 999999999943     4578888866 6999999999996 53  233356999999999


Q ss_pred             CCCCCceeEEEEEeCCCCC
Q psy12482        353 RLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       353 ~~~~~~~lG~~~i~l~~~~  371 (419)
                      ..+++++||++.|+|+++.
T Consensus        73 ~~~~dd~lG~v~i~L~~l~   91 (150)
T cd04019          73 GPNKDEPLGRAVIPLNDIE   91 (150)
T ss_pred             CCCCCCeEEEEEEEHHHCc
Confidence            9888999999999998853

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.73  E-value=1.5e-17  Score=131.52  Aligned_cols=91  Identities=23%  Similarity=0.388  Sum_probs=77.0

Q ss_pred             CcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcc-cCccccccCeEEEEEEE
Q psy12482        272 AKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRD-VSLEELSERCLELTVWD  350 (419)
Q Consensus       272 ~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~-v~~~~~~~~~l~i~V~d  350 (419)
                      +...|+|+|++|+||+   .+.+||||+|++.+     .+++|++++++.||+|||.|.|.. .+..++....|.|+|||
T Consensus         2 ~~~~l~V~v~~a~~L~---~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d   73 (111)
T cd04011           2 QDFQVRVRVIEARQLV---GGNIDPVVKVEVGG-----QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYD   73 (111)
T ss_pred             CcEEEEEEEEEcccCC---CCCCCCEEEEEECC-----EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEc
Confidence            3678999999999998   33799999999952     357899999999999999999961 23344556789999999


Q ss_pred             CCCCCCCceeEEEEEeCCCC
Q psy12482        351 HDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~  370 (419)
                      ++.++++++||++.|+|+.+
T Consensus        74 ~~~~~~~~~iG~~~i~l~~v   93 (111)
T cd04011          74 SRSLRSDTLIGSFKLDVGTV   93 (111)
T ss_pred             CcccccCCccEEEEECCccc
Confidence            99999999999999999875

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.73  E-value=6.2e-17  Score=131.60  Aligned_cols=120  Identities=22%  Similarity=0.318  Sum_probs=95.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCC--------CCeeecccccCCCCcee-ccEEEEEcccCcccccEE
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK--------AGKRKTRVKKHTLSPVF-DEVLKFQLTLEDLECRTL  193 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~--------~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~l~~~~l  193 (419)
                      ...|.+++|++|+ .+.. |.+||||++++.+++..        .++++|++++++.||+| ||+|.|.+..    ...|
T Consensus         2 ~~~~~~~~A~~L~-~~~f-g~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~----~~~L   75 (137)
T cd08691           2 SFSLSGLQARNLK-KGMF-FNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP----TDVL   75 (137)
T ss_pred             EEEEEEEEeCCCC-CccC-CCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC----CCEE
Confidence            3678999999998 6666 89999999999866543        34789999999999999 9999999854    3389


Q ss_pred             EEEEEecCCCCC---CceeEEEEEeCcccccCC---CCCceecCccccchhhhhhccccceEEEE
Q psy12482        194 WLSVWHSDMFGR---NDFLGEVMMSLENKVFDD---PSPKCYPLQERSEILDELICSKGELIIGL  252 (419)
Q Consensus       194 ~i~v~d~~~~~~---~~~iG~~~~~l~~~~~~~---~~~~w~~L~~~~~~~~~~~~~~G~l~l~l  252 (419)
                      .|+|||++..++   +++||++.+++.++....   ....|++|..+..    .+..+|+|.+.+
T Consensus        76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~----~s~v~G~~~l~~  136 (137)
T cd08691          76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTP----TDHVSGQLTFRF  136 (137)
T ss_pred             EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCC----CCcEEEEEEEEe
Confidence            999999865443   699999999999975442   3567999987653    255668888764

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.73  E-value=2e-17  Score=132.07  Aligned_cols=99  Identities=23%  Similarity=0.365  Sum_probs=80.9

Q ss_pred             eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482        275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR  353 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~  353 (419)
                      .++|.|++|+||+..+.. .+||||++.+.     ..+++|++++++.||.|||.|.|. +..  .....|.|+|||++.
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~-~~~--~~~~~l~v~v~d~~~   72 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG-----NEKYKSKVCSKTLNPQWLEQFDLH-LFD--DQSQILEIEVWDKDT   72 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEEC-----CEeEecccccCCCCCceeEEEEEE-ecC--CCCCEEEEEEEECCC
Confidence            478999999999999877 89999999983     245899999999999999999996 542  235679999999999


Q ss_pred             CCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        354 LTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       354 ~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      .+++++||++.++++++..+.....|+.
T Consensus        73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~  100 (116)
T cd08376          73 GKKDEFIGRCEIDLSALPREQTHSLELE  100 (116)
T ss_pred             CCCCCeEEEEEEeHHHCCCCCceEEEEE
Confidence            9999999999999987544333333433

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.73  E-value=2.2e-17  Score=132.23  Aligned_cols=87  Identities=23%  Similarity=0.425  Sum_probs=74.8

Q ss_pred             EEEEEeccccccccCC-C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482        276 LHVLIKEAKSLCPVKS-N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR  353 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~-~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~  353 (419)
                      |.|.|++|+||++++. + .+||||+|.+    +.....+|+++++|+||+|||.|.|. ++..   ...|.|.|||++.
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l----~~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~   73 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNL----DQEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDV   73 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEE----CCccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCC
Confidence            6899999999998753 3 7899999998    33346899999999999999999996 6532   2579999999999


Q ss_pred             CCCCceeEEEEEeCCCC
Q psy12482        354 LTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       354 ~~~~~~lG~~~i~l~~~  370 (419)
                      ++++++||.+.|+++++
T Consensus        74 ~~~~~~iG~~~i~l~~l   90 (121)
T cd08401          74 LRRDSVIGKVAIKKEDL   90 (121)
T ss_pred             CCCCceEEEEEEEHHHc
Confidence            99999999999999774

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.72  E-value=2e-17  Score=132.43  Aligned_cols=89  Identities=19%  Similarity=0.408  Sum_probs=75.1

Q ss_pred             ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeeccccc-CCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIK-RSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~-~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      |.|+|+|++|+||+..+.. .+||||+|.+..     .+++|+++. ++.||+|||.|.|. ++..  ....|.|+|||+
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~   72 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-----VTKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDD   72 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-----CccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeC
Confidence            6799999999999998877 999999999843     447788775 47899999999996 6543  335699999999


Q ss_pred             CCCCCCceeEEEEEeCCCCC
Q psy12482        352 DRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~~~  371 (419)
                      +..+ +++||++.|+++++.
T Consensus        73 ~~~~-~~~iG~~~~~l~~~~   91 (118)
T cd08681          73 DKRK-PDLIGDTEVDLSPAL   91 (118)
T ss_pred             CCCC-CcceEEEEEecHHHh
Confidence            9876 999999999998853

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.72  E-value=2.7e-17  Score=131.86  Aligned_cols=100  Identities=27%  Similarity=0.384  Sum_probs=80.5

Q ss_pred             EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482        276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL  354 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~  354 (419)
                      |.|+|++|++|+..+.. .+||||++.+.+..  ..+++|++++++.||+|||.|.|. +...  ....|.|+|||++..
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~   76 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV   76 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC
Confidence            78999999999998876 89999999985432  356899999999999999999996 6543  335699999999998


Q ss_pred             CCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        355 TSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       355 ~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                       ++++||++.++++.+..+.....|+.
T Consensus        77 -~~~~iG~~~~~l~~l~~g~~~~~~~~  102 (119)
T cd04036          77 -MDDHLGTVLFDVSKLKLGEKVRVTFS  102 (119)
T ss_pred             -CCcccEEEEEEHHHCCCCCcEEEEEE
Confidence             89999999999987544333333433

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.72  E-value=2e-17  Score=133.49  Aligned_cols=88  Identities=27%  Similarity=0.542  Sum_probs=76.3

Q ss_pred             eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482        275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR  353 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~  353 (419)
                      +|+|+|++|++|+.++.+ .+||||+|.+.     ..+.+|++++++.||+|||+|.|. +..  .....|.|+|||++.
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~-~~~--~~~~~l~~~v~d~~~   72 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN-----GQTLETSVVKKSCYPRWNEVFEFE-LME--GADSPLSVEVWDWDL   72 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEEC-----CEEEeceeecCCCCCccCcEEEEE-cCC--CCCCEEEEEEEECCC
Confidence            589999999999998877 89999999983     234789999999999999999996 543  224669999999999


Q ss_pred             CCCCceeEEEEEeCCCC
Q psy12482        354 LTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       354 ~~~~~~lG~~~i~l~~~  370 (419)
                      .+++++||++.++++++
T Consensus        73 ~~~~~~iG~~~~~l~~l   89 (123)
T cd04025          73 VSKNDFLGKVVFSIQTL   89 (123)
T ss_pred             CCCCcEeEEEEEEHHHc
Confidence            99999999999999774

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.72  E-value=1.8e-17  Score=132.70  Aligned_cols=113  Identities=24%  Similarity=0.424  Sum_probs=84.4

Q ss_pred             eEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482        275 SLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL  354 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~  354 (419)
                      .|.|+|++|+||+.+   .+||||+|.+..     .+.+|++++++.||+|||+|.|. +  ..+....|.|+|||++..
T Consensus         1 ~L~V~Vi~a~~L~~~---~~Dpyv~v~l~~-----~~~kT~v~~~t~nP~Wne~F~f~-~--~~~~~~~L~~~v~d~d~~   69 (121)
T cd08378           1 YLYVRVVKARGLPAN---SNDPVVEVKLGN-----YKGSTKAIERTSNPEWNQVFAFS-K--DRLQGSTLEVSVWDKDKA   69 (121)
T ss_pred             CEEEEEEEecCCCcc---cCCCEEEEEECC-----ccccccccCCCCCCccceEEEEE-c--CCCcCCEEEEEEEeCCCC
Confidence            389999999999887   689999999842     45899999999999999999996 3  344557799999999987


Q ss_pred             CCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeee
Q psy12482        355 TSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCI  405 (419)
Q Consensus       355 ~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~  405 (419)
                       ++++||++.|+++.+..++.      ..+.....|+.+...++.++.|-.
T Consensus        70 -~~~~lG~~~i~l~~l~~~~~------~~~~~~~~W~~L~~~~~~~~~G~i  113 (121)
T cd08378          70 -KDDFLGGVCFDLSEVPTRVP------PDSPLAPQWYRLEDKKGGRVGGEL  113 (121)
T ss_pred             -cCceeeeEEEEhHhCcCCCC------CCCCCCcceEEccCCCCCccceEE
Confidence             79999999999998643211      112223455555555444444433

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.72  E-value=3e-17  Score=135.46  Aligned_cols=106  Identities=25%  Similarity=0.417  Sum_probs=84.7

Q ss_pred             EEEEEEEeecCCCCCCCCC-------------CCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCccc
Q psy12482        123 ALEIHVKQCKDLAPVDTKR-------------QRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLE  189 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~-------------~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~  189 (419)
                      .|.|+|++|++|+.++...             +.+||||+|.+.     ..+.+|++++++.||+|||+|.|.+..... 
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-----g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~-   74 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-----GQKVKTSVKKNSYNPEWNEQIVFPEMFPPL-   74 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-----CEeeecceEcCCCCCCcceEEEEEeeCCCc-
Confidence            3789999999999988541             368999999986     235689999999999999999998654333 


Q ss_pred             ccEEEEEEEecCCCCCCceeEEEEEeCcccccCCC-------CCceecCccc
Q psy12482        190 CRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDP-------SPKCYPLQER  234 (419)
Q Consensus       190 ~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~-------~~~w~~L~~~  234 (419)
                      ...|.|+|||++..+++++||++.+++.++.....       ...|+.|...
T Consensus        75 ~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~  126 (151)
T cd04018          75 CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS  126 (151)
T ss_pred             CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence            34899999999999999999999999998755332       2356666543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.72  E-value=6.9e-17  Score=130.11  Aligned_cols=109  Identities=17%  Similarity=0.220  Sum_probs=88.5

Q ss_pred             eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482        275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR  353 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~  353 (419)
                      .|+|.|++|++|++++.. .+||||+|.+...   ....+|.+++++.||+|||.|.|. +.  ......|.|+|||++.
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~~~kT~~v~~t~nP~Wne~f~f~-~~--~~~~~~L~~~V~d~d~   74 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KINDRDNYIPNTLNPVFGKMFELE-AT--LPGNSILKISVMDYDL   74 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe---eccceeeEEECCCCCccceEEEEE-ec--CCCCCEEEEEEEECCC
Confidence            479999999999999987 9999999998432   234678888899999999999996 43  2234679999999999


Q ss_pred             CCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482        354 LTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES  403 (419)
Q Consensus       354 ~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~  403 (419)
                      ++++++||++.|++++.           ..   ..||+.+...|.....+
T Consensus        75 ~~~dd~iG~~~i~l~~~-----------~~---~~~~~~~~~~~~~~~~~  110 (124)
T cd04037          75 LGSDDLIGETVIDLEDR-----------FF---SKHRATCGLPPTYEESG  110 (124)
T ss_pred             CCCCceeEEEEEeeccc-----------cc---chHHHhccCCCcccccC
Confidence            99999999999999762           11   46888888888866443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.72  E-value=6.6e-17  Score=130.63  Aligned_cols=108  Identities=27%  Similarity=0.415  Sum_probs=92.2

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEcccCcc-cccEEEEEEEe
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWH  199 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d  199 (419)
                      |.|.|+|++|++|+..+.. +.+||||+|++.     ...++|++.+ ++.||.|||+|.|.+..... ....|.|+|||
T Consensus         1 g~L~V~V~~A~~L~~~~~~-~~~dpyv~v~~~-----~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d   74 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFL-GKIDPYVIIQCR-----TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMD   74 (124)
T ss_pred             CeEEEEEEecCCCCCCCCC-CCcCceEEEEEC-----CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEE
Confidence            5799999999999998876 889999999985     2346788777 48999999999999876532 24589999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      .+.++++++||++.+++.++........|+.|.+..
T Consensus        75 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~  110 (124)
T cd04049          75 KDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAK  110 (124)
T ss_pred             CccCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccc
Confidence            999889999999999999988777789999998853

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.71  E-value=1e-16  Score=128.28  Aligned_cols=116  Identities=20%  Similarity=0.277  Sum_probs=91.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |.|+|++|++|+..    +.+||||++++..    ...++|+++++ .||.|||+|.|.+...++....|.|.+||.+..
T Consensus         2 L~v~vi~a~~l~~~----~~~dpyv~v~~~~----~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~   72 (117)
T cd08383           2 LRLRILEAKNLPSK----GTRDPYCTVSLDQ----VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK   72 (117)
T ss_pred             eEEEEEEecCCCcC----CCCCceEEEEECC----EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccC
Confidence            78999999999876    5789999999952    12478999988 999999999999988776667899999998876


Q ss_pred             CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      +++..+|.+.|..  +..+.....|++|.+....    ....|+|++.+.|
T Consensus        73 ~~~~~~g~v~l~~--~~~~~~~~~w~~L~~~~~~----~~~~G~l~l~~~~  117 (117)
T cd08383          73 DRDIVIGKVALSK--LDLGQGKDEWFPLTPVDPD----SEVQGSVRLRARY  117 (117)
T ss_pred             CCeeEEEEEEecC--cCCCCcceeEEECccCCCC----CCcCceEEEEEEC
Confidence            6667777766554  4446667899999876432    2356999999876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.71  E-value=9.4e-17  Score=128.87  Aligned_cols=86  Identities=19%  Similarity=0.312  Sum_probs=74.2

Q ss_pred             EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482        276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL  354 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~  354 (419)
                      |.|.|++|++|++++.. .+||||+|.+.    +....+|+++++++||+|||.|.|+ +...   ...|.|+|||++.+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~----~~~~~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~~   73 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD----NEVIIRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDTL   73 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEEC----CEeeeeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCCC
Confidence            78999999999999987 99999999983    3345799999999999999999996 5422   25699999999999


Q ss_pred             CCCceeEEEEEeCCC
Q psy12482        355 TSNEFLGGIRLNLGH  369 (419)
Q Consensus       355 ~~~~~lG~~~i~l~~  369 (419)
                      +++++||++.+++..
T Consensus        74 ~~d~~iG~~~~~~~~   88 (121)
T cd04054          74 SRDDVIGKVSLTREV   88 (121)
T ss_pred             CCCCEEEEEEEcHHH
Confidence            999999999998744

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.71  E-value=6.8e-17  Score=130.79  Aligned_cols=116  Identities=25%  Similarity=0.337  Sum_probs=94.2

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEcccCcc--cccEEEEEEEec
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTLEDL--ECRTLWLSVWHS  200 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l--~~~~l~i~v~d~  200 (419)
                      |+|+|++|++|+..+.. +.+||||+|++.+    ..+++|++.+ ++.||.|||.|.|.+....+  ....|.|+|||+
T Consensus         2 L~V~V~sA~~L~~~~~~-~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~   76 (125)
T cd04051           2 LEITIISAEDLKNVNLF-GKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE   76 (125)
T ss_pred             EEEEEEEcccCCCCCcc-cCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence            78999999999998876 8999999999974    2357888875 68999999999999876542  346899999999


Q ss_pred             CCCCCCceeEEEEEeCcccccCCCC-----CceecCccccchhhhhhccccceEE
Q psy12482        201 DMFGRNDFLGEVMMSLENKVFDDPS-----PKCYPLQERSEILDELICSKGELII  250 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~~~~~~-----~~w~~L~~~~~~~~~~~~~~G~l~l  250 (419)
                      +.++++++||++.+++.++......     ..||+|.....      +..|.|.+
T Consensus        77 ~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g------~~~G~~~~  125 (125)
T cd04051          77 RPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG------KPQGVLNF  125 (125)
T ss_pred             CCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC------CcCeEEeC
Confidence            9888999999999999998665543     67999986542      34577753

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.71  E-value=1.3e-17  Score=139.83  Aligned_cols=89  Identities=26%  Similarity=0.386  Sum_probs=74.6

Q ss_pred             cceEEEEEeccccccccCC------------------------------C-CCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482        273 KGSLHVLIKEAKSLCPVKS------------------------------N-TVDAFCKAYLLPDKGRASKHKTGIIKRST  321 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~------------------------------~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~  321 (419)
                      -|.|.|+|++|++|+++|.                              . .+||||+|.+.    +....+|++++++.
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~----~~~~~rT~v~~~~~   81 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA----GARVARTRVIENSE   81 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC----CeEeeEEEEeCCCC
Confidence            5899999999999999872                              2 68999999983    33457999999999


Q ss_pred             CCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      ||+|||+|.|. +.  ... ..|.|+|+|++.++ +++||.+.|+++++
T Consensus        82 nP~WnE~F~~~-~~--~~~-~~l~~~V~d~d~~~-~~~IG~~~i~l~~l  125 (158)
T cd04015          82 NPVWNESFHIY-CA--HYA-SHVEFTVKDNDVVG-AQLIGRAYIPVEDL  125 (158)
T ss_pred             CCccceEEEEE-cc--CCC-CEEEEEEEeCCCcC-CcEEEEEEEEhHHc
Confidence            99999999996 43  222 45999999999886 68999999999874

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.71  E-value=9.2e-17  Score=129.78  Aligned_cols=99  Identities=13%  Similarity=0.286  Sum_probs=76.5

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD  352 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~  352 (419)
                      ...|+|+|++|+||+..+  .+||||+|.+    +...+.+|+++ ++.||.|||.|.|+ +....+  ..+.|.|||++
T Consensus         3 ~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l----~~~~~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~   72 (126)
T cd08400           3 VRSLQLNVLEAHKLPVKH--VPHPYCVISL----NEVKVARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKA   72 (126)
T ss_pred             eeEEEEEEEEeeCCCCCC--CCCeeEEEEE----CCEeEEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECC
Confidence            457999999999998743  6899999999    33445678874 58999999999996 433333  45899999999


Q ss_pred             CCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        353 RLTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       353 ~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      ..+++++||.+.|+|+++..++....||.
T Consensus        73 ~~~~d~~iG~v~i~l~~l~~~~~~~~W~~  101 (126)
T cd08400          73 KRSKDSEIAEVTVQLSKLQNGQETDEWYP  101 (126)
T ss_pred             CCCCCCeEEEEEEEHhHccCCCcccEeEE
Confidence            99999999999999988543333333333

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.70  E-value=8.6e-17  Score=131.76  Aligned_cols=89  Identities=27%  Similarity=0.514  Sum_probs=73.5

Q ss_pred             ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCc----cccc--cCeEEE
Q psy12482        274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSL----EELS--ERCLEL  346 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~----~~~~--~~~l~i  346 (419)
                      .+|+|.|++|++|+.++.. .+||||+|.+..     .+++|++++++.||+|||.|.|+....    .++.  ...|.|
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v   75 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLN-----QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVV   75 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECC-----eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEE
Confidence            4799999999999999987 999999999842     358999999999999999999962221    1121  245999


Q ss_pred             EEEECCCCCCCceeEEEEEeC
Q psy12482        347 TVWDHDRLTSNEFLGGIRLNL  367 (419)
Q Consensus       347 ~V~d~~~~~~~~~lG~~~i~l  367 (419)
                      +|||++..+++++||++.+..
T Consensus        76 ~V~d~d~~~~d~~iG~~~i~~   96 (135)
T cd04017          76 ELFDQDSVGKDEFLGRSVAKP   96 (135)
T ss_pred             EEEeCcCCCCCccceEEEeee
Confidence            999999999999999999843

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.70  E-value=7.1e-17  Score=133.42  Aligned_cols=95  Identities=31%  Similarity=0.521  Sum_probs=79.1

Q ss_pred             CCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCC------------------------cceeecccccCCCCCc
Q psy12482        270 SAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGR------------------------ASKHKTGIIKRSTSPQ  324 (419)
Q Consensus       270 ~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~------------------------~~~~~T~~~~~t~nP~  324 (419)
                      .+..+.|.|+|++|+||+++|.+ .+||||+|.+.+....                        ...++|.+++++.||+
T Consensus        24 ~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~  103 (153)
T cd08676          24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPV  103 (153)
T ss_pred             CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCc
Confidence            34489999999999999999987 9999999998643221                        1347899999999999


Q ss_pred             cccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482        325 WNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      |||.|.|. +  ..+....|.|+|||++    +++||++.|+++++.
T Consensus       104 WnE~F~f~-v--~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~  143 (153)
T cd08676         104 WNETFRFE-V--EDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP  143 (153)
T ss_pred             cccEEEEE-e--ccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence            99999996 4  3445567999999988    899999999998753

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.70  E-value=5.1e-17  Score=132.20  Aligned_cols=89  Identities=27%  Similarity=0.493  Sum_probs=77.7

Q ss_pred             ceEEEEEeccccccccCC--C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEE
Q psy12482        274 GSLHVLIKEAKSLCPVKS--N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWD  350 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~--~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d  350 (419)
                      |.|+|.|++|+||+..+.  . .+||||+|.+.     ..+++|++++++.||+|||.|.|+ +.  ......|.|+|||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~~P~Wne~f~~~-~~--~~~~~~l~i~v~d   72 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-----AQRFKTQTIPNTLNPKWNYWCEFP-IF--SAQNQLLKLILWD   72 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-----CEEEecceecCCcCCccCCcEEEE-ec--CCCCCEEEEEEEE
Confidence            679999999999999887  6 89999999983     245899999999999999999996 43  3445679999999


Q ss_pred             CCCCCCCceeEEEEEeCCCC
Q psy12482        351 HDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~  370 (419)
                      ++..+++++||++.|+++++
T Consensus        73 ~~~~~~~~~lG~~~i~l~~~   92 (128)
T cd04024          73 KDRFAGKDYLGEFDIALEEV   92 (128)
T ss_pred             CCCCCCCCcceEEEEEHHHh
Confidence            99998999999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.70  E-value=1e-16  Score=126.36  Aligned_cols=97  Identities=16%  Similarity=0.371  Sum_probs=77.4

Q ss_pred             ceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482        274 GSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR  353 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~  353 (419)
                      +.|.|.|++||+|+..+  ..||||+|.+..     .+.+|++.++ .||.|||.|.|. +  .+.... |.|+|||++.
T Consensus         2 ~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~-----~k~kT~v~~~-~nP~WnE~F~F~-~--~~~~~~-L~v~V~dkd~   69 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD--KFNTYVTLKVQN-----VKSTTIAVRG-SQPCWEQDFMFE-I--NRLDLG-LVIELWNKGL   69 (127)
T ss_pred             ceEEEEEEEeeCCCCCC--CCCCeEEEEECC-----EEeEeeECCC-CCCceeeEEEEE-E--cCCCCE-EEEEEEeCCC
Confidence            68999999999997644  469999999932     4578888887 599999999996 4  344444 9999999997


Q ss_pred             CCCCceeEEEEEeCCCCCcCCce--eecccCC
Q psy12482        354 LTSNEFLGGIRLNLGHGKHYSKL--VDWMDSS  383 (419)
Q Consensus       354 ~~~~~~lG~~~i~l~~~~~~~~~--~~w~~~~  383 (419)
                      + +|++||++.|+|+++..+...  ..||.+.
T Consensus        70 ~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~  100 (127)
T cd08394          70 I-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLD  100 (127)
T ss_pred             c-CCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence            6 799999999999998655443  5666654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.70  E-value=1.7e-16  Score=126.55  Aligned_cols=106  Identities=27%  Similarity=0.440  Sum_probs=91.0

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |+|.|++|++|+..+.. +.+||||+|++.+    ...++|+++.++.||.|||+|.|.+...  ....|.|+|||++..
T Consensus         1 l~v~vi~a~~L~~~~~~-~~~dpyv~v~~~~----~~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~   73 (115)
T cd04040           1 LTVDVISAENLPSADRN-GKSDPFVKFYLNG----EKVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRG   73 (115)
T ss_pred             CEEEEEeeeCCCCCCCC-CCCCCeEEEEECC----CcceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCC
Confidence            57899999999998876 8899999999953    2357999999999999999999998654  355899999999998


Q ss_pred             CCCceeEEEEEeCcccccCCCCCceecCccccc
Q psy12482        204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSE  236 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~  236 (419)
                      +++++||++.+++.++........|++|.+.+.
T Consensus        74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~  106 (115)
T cd04040          74 GKDDLLGSAYIDLSDLEPEETTELTLPLDGQGG  106 (115)
T ss_pred             CCCCceEEEEEEHHHcCCCCcEEEEEECcCCCC
Confidence            899999999999999877777788999987543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.69  E-value=2.5e-16  Score=129.85  Aligned_cols=93  Identities=18%  Similarity=0.267  Sum_probs=76.0

Q ss_pred             EEEEecccc--ccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcc------ccccCeEEEE
Q psy12482        277 HVLIKEAKS--LCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLE------ELSERCLELT  347 (419)
Q Consensus       277 ~v~v~~a~~--L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~------~~~~~~l~i~  347 (419)
                      .++|..|++  |+..+.+ .+||||++++.....+..+.+|+++++|+||+|||.|.|. ++..      .+....|.|+
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEEE
Confidence            445555555  7777766 8999999998544456778999999999999999999996 7654      3556779999


Q ss_pred             EEECCCC-CCCceeEEEEEeCCCC
Q psy12482        348 VWDHDRL-TSNEFLGGIRLNLGHG  370 (419)
Q Consensus       348 V~d~~~~-~~~~~lG~~~i~l~~~  370 (419)
                      |||++.+ ++|++||++.|+|+.+
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l  107 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPL  107 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccc
Confidence            9999886 5799999999999884

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.69  E-value=1.2e-16  Score=128.61  Aligned_cols=99  Identities=23%  Similarity=0.460  Sum_probs=79.4

Q ss_pred             ceEEEEEeccccccccCC------C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEE
Q psy12482        274 GSLHVLIKEAKSLCPVKS------N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLEL  346 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~------~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i  346 (419)
                      |.|+|+|++|+||+..+.      . .+||||+|.+..     ..++|++++++.||+|||.|.|. +..  .....|.|
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~~P~W~e~f~~~-v~~--~~~~~l~i   72 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-----QTFKSKVIKENLNPKWNEVYEAV-VDE--VPGQELEI   72 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-----EeEEccccCCCCCCcccceEEEE-eCC--CCCCEEEE
Confidence            579999999999998874      2 789999999842     56899999999999999999996 532  23467999


Q ss_pred             EEEECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        347 TVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       347 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      +|||++.. ++++||.+.++++++..++....||.
T Consensus        73 ~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~  106 (121)
T cd08391          73 ELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLP  106 (121)
T ss_pred             EEEecCCC-CCCcEEEEEEEHHHhcccCccceEEE
Confidence            99999988 89999999999987543333333333

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.69  E-value=2.2e-16  Score=126.50  Aligned_cols=94  Identities=23%  Similarity=0.391  Sum_probs=77.7

Q ss_pred             CCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEE
Q psy12482        270 SAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTV  348 (419)
Q Consensus       270 ~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V  348 (419)
                      ....+.|.|+|++|++|+. +.. .+||||+|.+.+     .+++|++++++.||+|||+|.|.....  .....|.|+|
T Consensus        24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-----~~~kT~vi~~t~nPvWNE~F~f~~~~~--~~~~~L~v~V   95 (127)
T cd04032          24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-----QEKRTEVIWNNNNPRWNATFDFGSVEL--SPGGKLRFEV   95 (127)
T ss_pred             cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-----ccccCceecCCCCCcCCCEEEEecccC--CCCCEEEEEE
Confidence            3447999999999999984 444 889999999832     268999999999999999999951222  2346699999


Q ss_pred             EECCCCCCCceeEEEEEeCCCCC
Q psy12482        349 WDHDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       349 ~d~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      ||++..+++++||++.++|+.+.
T Consensus        96 ~D~d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          96 WDRDNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             EeCCCCCCCCeeEEEEEEecCCc
Confidence            99999999999999999998743

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.69  E-value=1.4e-16  Score=130.40  Aligned_cols=92  Identities=23%  Similarity=0.495  Sum_probs=78.1

Q ss_pred             EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcc-------------cccc
Q psy12482        276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLE-------------ELSE  341 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~-------------~~~~  341 (419)
                      |+|.|++|+||+.+ .. .+||||+|.+... ....+++|++++++.||.|||.|.|. +...             ++..
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~   77 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEK   77 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEE-ccccccccccccccccccccc
Confidence            57999999999988 55 8999999999643 33567899999999999999999997 4432             3456


Q ss_pred             CeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        342 RCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       342 ~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      ..|.|+|||++..+++++||++.|++.++
T Consensus        78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l  106 (137)
T cd08675          78 SELRVELWHASMVSGDDFLGEVRIPLQGL  106 (137)
T ss_pred             cEEEEEEEcCCcCcCCcEEEEEEEehhhc
Confidence            77999999999988999999999999874

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.69  E-value=1.7e-16  Score=127.33  Aligned_cols=104  Identities=27%  Similarity=0.427  Sum_probs=87.2

Q ss_pred             EEEeecCCCCCCCCCCCCCcEEEEEEeCCC--CCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCC--
Q psy12482        127 HVKQCKDLAPVDTKRQRSDPYVKVYLLPDK--SKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDM--  202 (419)
Q Consensus       127 ~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~--~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~--  202 (419)
                      ..++|++|+..+.. +.+||||+|++.+..  .....++|++++++.||+|||+|.|.+..+..  ..|.|+|||++.  
T Consensus         5 ~~i~a~~L~~~d~~-g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d~~~   81 (120)
T cd04048           5 LSISCRNLLDKDVL-SKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVDSKS   81 (120)
T ss_pred             EEEEccCCCCCCCC-CCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEecCCc
Confidence            45789999999987 889999999998653  33346899999999999999999998654443  389999999997  


Q ss_pred             --CCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        203 --FGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       203 --~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                        .+++++||++.+++.++........|+.|.+
T Consensus        82 ~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          82 KDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence              7899999999999999887777778888843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.69  E-value=2.3e-16  Score=126.19  Aligned_cols=106  Identities=27%  Similarity=0.430  Sum_probs=90.3

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      |.|+|+|++|++|+..+.. +.+||||++++..    ..+++|++++++.||.|||+|.|.+...   ...|.|+|||++
T Consensus         1 g~L~V~Vi~a~~L~~~d~~-g~~DPYv~v~~~~----~~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~   72 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGV-GKIDPYVRVLVNG----IVKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYE   72 (120)
T ss_pred             CeEEEEEEeeECCCCccCC-CCcCCEEEEEECC----EEeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECC
Confidence            5789999999999999876 8999999999942    1357899999999999999999987553   358999999999


Q ss_pred             CCCCCceeEEEEEeCcccccCCCCCceecCccccc
Q psy12482        202 MFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSE  236 (419)
Q Consensus       202 ~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~  236 (419)
                      ..+++++||++.+++.++... +...||.|....+
T Consensus        73 ~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~  106 (120)
T cd04045          73 KVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEE  106 (120)
T ss_pred             CCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCCc
Confidence            999999999999999997654 7788988876543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.69  E-value=2.8e-16  Score=125.91  Aligned_cols=92  Identities=24%  Similarity=0.313  Sum_probs=77.4

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      .+.|+|+|++|++|+. +.. +.+||||+|++.     ..++||++++++.||+|||+|.|...... ....|.|+|||+
T Consensus        27 ~~~L~V~V~~A~~L~~-d~~-g~~DPYVkV~~~-----~~~~kT~vi~~t~nPvWNE~F~f~~~~~~-~~~~L~v~V~D~   98 (127)
T cd04032          27 LATLTVTVLRATGLWG-DYF-TSTDGYVKVFFG-----GQEKRTEVIWNNNNPRWNATFDFGSVELS-PGGKLRFEVWDR   98 (127)
T ss_pred             cEEEEEEEEECCCCCc-CcC-CCCCeEEEEEEC-----CccccCceecCCCCCcCCCEEEEecccCC-CCCEEEEEEEeC
Confidence            5789999999999984 554 789999999995     22689999999999999999999742211 355999999999


Q ss_pred             CCCCCCceeEEEEEeCcccc
Q psy12482        201 DMFGRNDFLGEVMMSLENKV  220 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~  220 (419)
                      +..+++++||++.++|....
T Consensus        99 d~~s~dd~IG~~~i~l~~~~  118 (127)
T cd04032          99 DNGWDDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCCCCCeeEEEEEEecCCc
Confidence            99999999999999998643

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.68  E-value=1.7e-16  Score=129.89  Aligned_cols=125  Identities=23%  Similarity=0.326  Sum_probs=91.2

Q ss_pred             EEEEEeccccccccCCC-CCCcEEEEEEeCC--CCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482        276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPD--KGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD  352 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~--~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~  352 (419)
                      |+|+|++|+||+..+.. .+||||+|.+.+.  +....+++|.+++++.||+|||.|.|. +...   ...|.|+|||++
T Consensus         2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~   77 (133)
T cd04033           2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDEN   77 (133)
T ss_pred             EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEECC
Confidence            78999999999998877 8999999999754  223346799999999999999999996 5432   356999999999


Q ss_pred             CCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCC-CceEEeeeeccC
Q psy12482        353 RLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERP-NFWVESCIPLRS  409 (419)
Q Consensus       353 ~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p-~~~i~~w~~l~~  409 (419)
                      .++++++||++.|+++++.......     .+.....|+++.... .....|...|.+
T Consensus        78 ~~~~~~~iG~~~i~l~~l~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~G~l~~~~  130 (133)
T cd04033          78 RLTRDDFLGQVEVPLNNLPTETPGN-----ERRYTFKDYLLRPRSSKSRVKGHLRLYM  130 (133)
T ss_pred             CCCCCCeeEEEEEEHHHCCCcCccc-----cccccchheeeeecCCCCcceeEEEEEE
Confidence            9999999999999998864331110     012244566554221 223556655544

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.68  E-value=3.9e-16  Score=121.43  Aligned_cols=85  Identities=22%  Similarity=0.316  Sum_probs=72.5

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec---
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS---  200 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~---  200 (419)
                      |.|+|++|+||.      +.+||||++++.+.+....+.||+++++|+||+|||+|.|.+..    ...|.+.|||+   
T Consensus         1 L~V~V~~A~~L~------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~   70 (118)
T cd08686           1 LNVIVHSAQGFK------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEKCYS   70 (118)
T ss_pred             CEEEEEeCCCCC------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEcccc
Confidence            679999999995      56899999999876654457999999999999999999999853    44999999998   


Q ss_pred             ----CCCCCCceeEEEEEeCcc
Q psy12482        201 ----DMFGRNDFLGEVMMSLEN  218 (419)
Q Consensus       201 ----~~~~~~~~iG~~~~~l~~  218 (419)
                          +..++|++||.+.+.|+-
T Consensus        71 ~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          71 KVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             cccccccCcccEEEEEEEEECH
Confidence                456789999998888764

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.68  E-value=2.1e-16  Score=129.94  Aligned_cols=88  Identities=25%  Similarity=0.374  Sum_probs=77.4

Q ss_pred             ceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482        274 GSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR  353 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~  353 (419)
                      |.|+|+|++|+||+..+...+||||++.+.     ..+++|++++++.||+|||.|.|. ++.  . ...|.|+|||++.
T Consensus         2 G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g-----~~~~kT~vvk~t~nP~WnE~f~f~-i~~--~-~~~l~~~V~D~d~   72 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDFTSSDPYVVLTLG-----NQKVKTRVIKKNLNPVWNEELTLS-VPN--P-MAPLKLEVFDKDT   72 (145)
T ss_pred             eEEEEEEEeeECCCCCCCCCcCcEEEEEEC-----CEEEEeeeEcCCCCCeecccEEEE-ecC--C-CCEEEEEEEECCC
Confidence            789999999999998776789999999983     246899999999999999999996 542  2 4669999999999


Q ss_pred             CCCCceeEEEEEeCCCC
Q psy12482        354 LTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       354 ~~~~~~lG~~~i~l~~~  370 (419)
                      ++++++||.+.+++.++
T Consensus        73 ~~~dd~iG~a~i~l~~l   89 (145)
T cd04038          73 FSKDDSMGEAEIDLEPL   89 (145)
T ss_pred             CCCCCEEEEEEEEHHHh
Confidence            99999999999999874

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.68  E-value=3.4e-16  Score=126.10  Aligned_cols=120  Identities=27%  Similarity=0.425  Sum_probs=90.5

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |+|.|++|++|+..+.. +.+||||++++....   ...+|++++++.||+|||+|.|.+...  ....|.|+|||++..
T Consensus         2 lrV~Vi~a~~L~~~d~~-g~~DPYv~v~~~~~~---~~~kT~~v~~t~nP~Wne~f~f~~~~~--~~~~L~~~V~d~d~~   75 (124)
T cd04037           2 VRVYVVRARNLQPKDPN-GKSDPYLKIKLGKKK---INDRDNYIPNTLNPVFGKMFELEATLP--GNSILKISVMDYDLL   75 (124)
T ss_pred             EEEEEEECcCCCCCCCC-CCCCcEEEEEECCee---ccceeeEEECCCCCccceEEEEEecCC--CCCEEEEEEEECCCC
Confidence            78999999999999987 899999999996322   236788888999999999999986443  345899999999999


Q ss_pred             CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        204 GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      +++++||++.+++++...   ..+|+........     ...|.++....+.|.
T Consensus        76 ~~dd~iG~~~i~l~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~  121 (124)
T cd04037          76 GSDDLIGETVIDLEDRFF---SKHRATCGLPPTY-----EESGPNQWRDSLKPS  121 (124)
T ss_pred             CCCceeEEEEEeeccccc---chHHHhccCCCcc-----cccCceecCcccCcc
Confidence            999999999999998543   2234333222221     134777666655553

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.67  E-value=2.1e-16  Score=127.95  Aligned_cols=98  Identities=16%  Similarity=0.297  Sum_probs=77.8

Q ss_pred             EEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCC
Q psy12482        276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLT  355 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~  355 (419)
                      |.|+|++|+||+. ..+.+||||++.+..   ...+++|++++++.||+|||.|.|. +..   ....|.|+|||++..+
T Consensus         1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~~~---~~~~l~~~v~d~~~~~   72 (126)
T cd08678           1 LLVKNIKANGLSE-AAGSSNPYCVLEMDE---PPQKYQSSTQKNTSNPFWDEHFLFE-LSP---NSKELLFEVYDNGKKS   72 (126)
T ss_pred             CEEEEEEecCCCC-CCCCcCCEEEEEECC---CCcEEEeEEEecCCCCccCceEEEE-eCC---CCCEEEEEEEECCCCC
Confidence            5799999999988 333899999999831   2356899999999999999999996 642   2356999999999999


Q ss_pred             CCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        356 SNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       356 ~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      ++++||++.++++.+........|+.
T Consensus        73 ~~~~lG~~~i~l~~l~~~~~~~~~~~   98 (126)
T cd08678          73 DSKFLGLAIVPFDELRKNPSGRQIFP   98 (126)
T ss_pred             CCceEEEEEEeHHHhccCCceeEEEE
Confidence            99999999999987544333333333

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.67  E-value=2.8e-16  Score=126.53  Aligned_cols=88  Identities=19%  Similarity=0.340  Sum_probs=76.1

Q ss_pred             eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482        275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR  353 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~  353 (419)
                      .|+|+|++|++|+.++.. .+||||++.+.    ....++|++++++.||+|||.|.|. +..    ...|.|+|||++.
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~----~~~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~   71 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD----GGQTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKK   71 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEEC----CccceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCC
Confidence            389999999999998877 89999999983    2456899999999999999999996 543    4679999999998


Q ss_pred             CCC--CceeEEEEEeCCCCC
Q psy12482        354 LTS--NEFLGGIRLNLGHGK  371 (419)
Q Consensus       354 ~~~--~~~lG~~~i~l~~~~  371 (419)
                      +++  +++||++.++++++.
T Consensus        72 ~~~~~d~~lG~~~i~l~~l~   91 (123)
T cd08382          72 FKKKDQGFLGCVRIRANAVL   91 (123)
T ss_pred             CCCCCCceEeEEEEEHHHcc
Confidence            875  589999999998853

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.67  E-value=2.4e-16  Score=127.29  Aligned_cols=103  Identities=20%  Similarity=0.321  Sum_probs=82.5

Q ss_pred             ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccC-CCCCccccEEEEcccCcccc-ccCeEEEEEEE
Q psy12482        274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKR-STSPQWNHTVVYRDVSLEEL-SERCLELTVWD  350 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~-t~nP~wne~f~f~~v~~~~~-~~~~l~i~V~d  350 (419)
                      |.|.|+|++|+||+..+.. .+||||+|.+..     ..++|++..+ +.||+|||.|.|. +..... ....|.|+|||
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d   74 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-----QERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMD   74 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-----EeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEE
Confidence            6899999999999998877 899999999832     3467777774 8999999999996 654422 34569999999


Q ss_pred             CCCCCCCceeEEEEEeCCCCCcCCceeecccC
Q psy12482        351 HDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDS  382 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~  382 (419)
                      ++.++++++||.+.|+++++...+....|+.+
T Consensus        75 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l  106 (124)
T cd04049          75 KDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL  106 (124)
T ss_pred             CccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence            99999999999999999886555444455443

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.67  E-value=2.6e-16  Score=125.87  Aligned_cols=90  Identities=20%  Similarity=0.392  Sum_probs=77.9

Q ss_pred             ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482        274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD  352 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~  352 (419)
                      |.|+|+|++|++|+..+.. .+||||+|.+    +...+++|+++.++.||+|||.|.|+ +...   ...|.|+|||++
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~----~~~~~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~   72 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLV----NGIVKGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYE   72 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEE----CCEEeeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECC
Confidence            6799999999999998877 9999999998    33466899999999999999999996 4322   256999999999


Q ss_pred             CCCCCceeEEEEEeCCCCC
Q psy12482        353 RLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       353 ~~~~~~~lG~~~i~l~~~~  371 (419)
                      ..+++++||++.++++++.
T Consensus        73 ~~~~d~~IG~~~~~l~~l~   91 (120)
T cd04045          73 KVGKDRSLGSVEINVSDLI   91 (120)
T ss_pred             CCCCCCeeeEEEEeHHHhh
Confidence            9999999999999998753

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.66  E-value=1.6e-15  Score=122.98  Aligned_cols=90  Identities=21%  Similarity=0.307  Sum_probs=77.2

Q ss_pred             eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482        275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR  353 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~  353 (419)
                      .|.|+|++|++|+.++.. .+||||++.+...  ....++|++++++.||.|||.|.|. +...  ....|.|+|||++.
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~--~~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d~   76 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG--KRRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRSF   76 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCC--CeeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECCC
Confidence            689999999999999887 8999999987432  2456899999999999999999996 5443  34669999999999


Q ss_pred             CCCCceeEEEEEeCCC
Q psy12482        354 LTSNEFLGGIRLNLGH  369 (419)
Q Consensus       354 ~~~~~~lG~~~i~l~~  369 (419)
                      .+++++||++.++|+.
T Consensus        77 ~~~~~~iG~~~i~l~~   92 (126)
T cd04043          77 VGKHDLCGRASLKLDP   92 (126)
T ss_pred             CCCCceEEEEEEecCH
Confidence            9899999999999976

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.66  E-value=5.3e-16  Score=124.46  Aligned_cols=88  Identities=28%  Similarity=0.520  Sum_probs=76.3

Q ss_pred             ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482        274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD  352 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~  352 (419)
                      |.|.|+|++|+||+.++.. .+||||+|.+..     ..++|++++++.||.|||+|.|+ +.  ++ ...|.|+|||++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~~~-~~--~~-~~~l~~~v~d~~   71 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-----ARLQTHTIYKTLNPEWNKIFTFP-IK--DI-HDVLEVTVYDED   71 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-----EeeecceecCCcCCccCcEEEEE-ec--Cc-CCEEEEEEEECC
Confidence            6899999999999998887 899999999842     24799999999999999999996 43  22 356999999999


Q ss_pred             CCCCCceeEEEEEeCCCC
Q psy12482        353 RLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       353 ~~~~~~~lG~~~i~l~~~  370 (419)
                      ..+++++||++.+++.++
T Consensus        72 ~~~~~~~iG~~~~~l~~~   89 (119)
T cd08377          72 KDKKPEFLGKVAIPLLSI   89 (119)
T ss_pred             CCCCCceeeEEEEEHHHC
Confidence            988999999999999774

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.65  E-value=2.4e-15  Score=122.34  Aligned_cols=122  Identities=24%  Similarity=0.345  Sum_probs=94.7

Q ss_pred             CEEEEEEEeecCCCCCC--CCCCCCCcEEEEEEeCCCC-CCCeeecccccCCC-CceeccEEEEEcccCcccccEEEEEE
Q psy12482        122 GALEIHVKQCKDLAPVD--TKRQRSDPYVKVYLLPDKS-KAGKRKTRVKKHTL-SPVFDEVLKFQLTLEDLECRTLWLSV  197 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~--~~~~~~dpyv~v~l~~~~~-~~~~~kT~~~~~t~-nP~wne~f~f~v~~~~l~~~~l~i~v  197 (419)
                      ..|+|+|++|++|+..+  .. +..||||++++...+. ...+++|++++++. ||.|||+|.|.+...+  ...|.|+|
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~-~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V   78 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKG-SIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVV   78 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCC-CccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEE
Confidence            36899999999999887  34 7889999999975543 34578999987765 9999999999987544  34799999


Q ss_pred             EecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        198 WHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       198 ~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      ||.+.. ++++||++.+++.++..   ...|++|......    ....|.|.+.+.+
T Consensus        79 ~d~~~~-~~~~iG~~~~~l~~l~~---g~~~~~l~~~~~~----~~~~~~l~v~~~~  127 (128)
T cd00275          79 YDEDSG-DDDFLGQACLPLDSLRQ---GYRHVPLLDSKGE----PLELSTLFVHIDI  127 (128)
T ss_pred             EeCCCC-CCcEeEEEEEEhHHhcC---ceEEEEecCCCCC----CCcceeEEEEEEE
Confidence            999987 89999999999998743   2367888654332    1233788877754

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.65  E-value=8.7e-16  Score=126.26  Aligned_cols=90  Identities=38%  Similarity=0.510  Sum_probs=80.0

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      |.|+|+|++|++|+..+.  +.+||||++++.     ..+++|++++++.||+|||.|.|.+...   ...|.|+|||++
T Consensus         2 G~L~V~Vi~a~nL~~~d~--~~sDPYV~v~~g-----~~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d   71 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF--TSSDPYVVLTLG-----NQKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKD   71 (145)
T ss_pred             eEEEEEEEeeECCCCCCC--CCcCcEEEEEEC-----CEEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECC
Confidence            679999999999998875  679999999995     3478999999999999999999998653   558999999999


Q ss_pred             CCCCCceeEEEEEeCccccc
Q psy12482        202 MFGRNDFLGEVMMSLENKVF  221 (419)
Q Consensus       202 ~~~~~~~iG~~~~~l~~~~~  221 (419)
                      .++++++||++.+++.++..
T Consensus        72 ~~~~dd~iG~a~i~l~~l~~   91 (145)
T cd04038          72 TFSKDDSMGEAEIDLEPLVE   91 (145)
T ss_pred             CCCCCCEEEEEEEEHHHhhh
Confidence            99999999999999988653

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.65  E-value=8.7e-16  Score=125.43  Aligned_cols=90  Identities=24%  Similarity=0.379  Sum_probs=77.0

Q ss_pred             cceEEEEEeccccccccCC-----------CCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcccccc
Q psy12482        273 KGSLHVLIKEAKSLCPVKS-----------NTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSE  341 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~-----------~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~  341 (419)
                      .|.|+|+|++|++|+..+.           +.+||||++.+.    .....+|++++++.||.|||.|.|. +.    ..
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~----~~~~~kT~~~~~t~~P~Wne~f~~~-v~----~~   73 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD----DTHIGKTSTKPKTNSPVWNEEFTTE-VH----NG   73 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC----CEEEeEEeEcCCCCCCCcceeEEEE-cC----CC
Confidence            5889999999999998875           268999999983    3345689999999999999999996 64    23


Q ss_pred             CeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482        342 RCLELTVWDHDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       342 ~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      ..|.|.|||++..+++++||.+.++|+++.
T Consensus        74 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~  103 (132)
T cd04014          74 RNLELTVFHDAAIGPDDFVANCTISFEDLI  103 (132)
T ss_pred             CEEEEEEEeCCCCCCCceEEEEEEEhHHhc
Confidence            669999999999889999999999998743

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.65  E-value=8.6e-16  Score=119.50  Aligned_cols=85  Identities=18%  Similarity=0.347  Sum_probs=70.9

Q ss_pred             EEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC----
Q psy12482        276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH----  351 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~----  351 (419)
                      |.|+|.+|+||+.    .+||||++.+.+.+....+.+|+++++|+||+|||.|.|. +..    ..+|.+.|||+    
T Consensus         1 L~V~V~~A~~L~~----~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~~----s~~L~~~v~d~~~~~   71 (118)
T cd08686           1 LNVIVHSAQGFKQ----SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LEG----SQTLRILCYEKCYSK   71 (118)
T ss_pred             CEEEEEeCCCCCC----CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eCC----CCEEEEEEEEccccc
Confidence            6799999999963    5899999998765444567999999999999999999997 542    35799999998    


Q ss_pred             ---CCCCCCceeEEEEEeCCC
Q psy12482        352 ---DRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       352 ---~~~~~~~~lG~~~i~l~~  369 (419)
                         |..++|+++|.+.|.|+.
T Consensus        72 ~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          72 VKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccccccCcccEEEEEEEEECH
Confidence               567889999888887754

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.64  E-value=1.8e-15  Score=123.54  Aligned_cols=123  Identities=15%  Similarity=0.184  Sum_probs=95.6

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      ..|.|.|++|++|+.++      +|||.|.|..    ....+|+++.++.||.|+|.|.|.....   -..|.|.||..+
T Consensus        11 ~sL~v~V~EAk~Lp~~~------~~Y~~i~Ld~----~~vaRT~v~~~~~nP~W~E~F~f~~~~~---~~~l~v~v~k~~   77 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK------RYYCELCLDK----TLYARTTSKLKTDTLFWGEHFEFSNLPP---VSVITVNLYRES   77 (146)
T ss_pred             EEEEEEEEEccCCCCcC------CceEEEEECC----EEEEEEEEEcCCCCCcceeeEEecCCCc---ccEEEEEEEEcc
Confidence            56999999999998653      7999999962    2246999999999999999999974432   247999998654


Q ss_pred             C-CC---CCceeEEEEEeCcccccCCCCCceecCccccchhh----hhhccccceEEEEEEeCC
Q psy12482        202 M-FG---RNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILD----ELICSKGELIIGLKFVPP  257 (419)
Q Consensus       202 ~-~~---~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~----~~~~~~G~l~l~l~~~~~  257 (419)
                      . .+   ++.+||.+.|++.++..+...+.||+|.+......    ......+.|++++.|.+.
T Consensus        78 ~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          78 DKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             CccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence            3 22   57899999999999988888899999976654320    012334799999999875

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.64  E-value=9.6e-16  Score=122.96  Aligned_cols=99  Identities=22%  Similarity=0.286  Sum_probs=78.9

Q ss_pred             EEeccccccccCCC-CCCcEEEEEEeCCC--CCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC--
Q psy12482        279 LIKEAKSLCPVKSN-TVDAFCKAYLLPDK--GRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR--  353 (419)
Q Consensus       279 ~v~~a~~L~~~~~~-~~dpyV~v~~~~~~--~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~--  353 (419)
                      ..++|++|+..+.. .+||||+|.+....  +....++|++++++.||+|||.|.|. +.....  ..|.|+|||++.  
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~~--~~l~~~V~d~d~~~   81 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEEV--QKLRFEVYDVDSKS   81 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEee--eEEEEEEEEecCCc
Confidence            45889999998877 89999999997653  34557899999999999999999995 443332  469999999997  


Q ss_pred             --CCCCceeEEEEEeCCCCCcCCceeecc
Q psy12482        354 --LTSNEFLGGIRLNLGHGKHYSKLVDWM  380 (419)
Q Consensus       354 --~~~~~~lG~~~i~l~~~~~~~~~~~w~  380 (419)
                        .+++++||++.++++++........|+
T Consensus        82 ~~~~~~d~iG~~~i~l~~l~~~~~~~~~~  110 (120)
T cd04048          82 KDLSDHDFLGEAECTLGEIVSSPGQKLTL  110 (120)
T ss_pred             CCCCCCcEEEEEEEEHHHHhcCCCcEEEE
Confidence              789999999999998754433333333

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.64  E-value=1.6e-15  Score=119.69  Aligned_cols=101  Identities=24%  Similarity=0.316  Sum_probs=82.6

Q ss_pred             CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccc
Q psy12482        141 RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKV  220 (419)
Q Consensus       141 ~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~  220 (419)
                      .|.+||||+|++..    ...++|++++++.||.|||.|.|.+...  ....|.|.|||.+.+ ++++||++.++|+++.
T Consensus        10 ~G~~dPYv~v~v~~----~~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~   82 (111)
T cd04052          10 TGLLSPYAELYLNG----KLVYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLNDLI   82 (111)
T ss_pred             CCCCCceEEEEECC----EEEEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHHHH
Confidence            37899999999952    1257899999999999999999988543  355899999999988 8999999999999874


Q ss_pred             cC-CCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        221 FD-DPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       221 ~~-~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      .. .....|++|...         ..|+|++++.|.|.
T Consensus        83 ~~~~~~~~w~~L~~~---------~~G~i~~~~~~~p~  111 (111)
T cd04052          83 DATSVGQQWFPLSGN---------GQGRIRISALWKPV  111 (111)
T ss_pred             hhhhccceeEECCCC---------CCCEEEEEEEEecC
Confidence            33 345789999852         23999999999873

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.63  E-value=9e-16  Score=124.29  Aligned_cols=88  Identities=20%  Similarity=0.384  Sum_probs=73.4

Q ss_pred             ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482        274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD  352 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~  352 (419)
                      ..|+|+|++|++|+..+.. .+||||+|.+..     .+++|+++.++.||.|||.|.|. +..  . ...|.|+|||++
T Consensus         1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~v~~t~~P~Wne~f~f~-~~~--~-~~~l~i~v~d~d   71 (127)
T cd04027           1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGK-----TKKRTKTIPQNLNPVWNEKFHFE-CHN--S-SDRIKVRVWDED   71 (127)
T ss_pred             CeEEEEEEECcCCcCCCCCCCcCcEEEEEECC-----EeeecceecCCCCCccceEEEEE-ecC--C-CCEEEEEEEECC
Confidence            3689999999999999877 899999999832     35799999999999999999996 422  1 246999999998


Q ss_pred             CC-----------CCCceeEEEEEeCCCC
Q psy12482        353 RL-----------TSNEFLGGIRLNLGHG  370 (419)
Q Consensus       353 ~~-----------~~~~~lG~~~i~l~~~  370 (419)
                      ..           +.+++||++.+++.++
T Consensus        72 ~~~~~~~~~~~~~~~~~~iG~~~i~l~~~  100 (127)
T cd04027          72 DDIKSRLKQKFTRESDDFLGQTIIEVRTL  100 (127)
T ss_pred             CCcccccceeccccCCCcceEEEEEhHHc
Confidence            52           5689999999999763

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.63  E-value=1.6e-15  Score=120.88  Aligned_cols=89  Identities=29%  Similarity=0.421  Sum_probs=76.1

Q ss_pred             EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482        276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL  354 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~  354 (419)
                      |+|.|++|++|+..+.. .+||||+|.+.    ....++|+++.++.||+|||.|.|. ++.  .....+.|+|||++..
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~----~~~~~~T~v~~~~~~P~Wne~f~~~-~~~--~~~~~l~~~v~d~~~~   73 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLN----GEKVFKTKTIKKTLNPVWNESFEVP-VPS--RVRAVLKVEVYDWDRG   73 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEEC----CCcceeeceecCCCCCcccccEEEE-ecc--CCCCEEEEEEEeCCCC
Confidence            57999999999998876 89999999983    2445899999999999999999996 542  2446699999999999


Q ss_pred             CCCceeEEEEEeCCCCC
Q psy12482        355 TSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       355 ~~~~~lG~~~i~l~~~~  371 (419)
                      +++++||++.+++.++.
T Consensus        74 ~~~~~iG~~~~~l~~l~   90 (115)
T cd04040          74 GKDDLLGSAYIDLSDLE   90 (115)
T ss_pred             CCCCceEEEEEEHHHcC
Confidence            99999999999997743

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.63  E-value=1.7e-15  Score=121.32  Aligned_cols=96  Identities=25%  Similarity=0.405  Sum_probs=81.6

Q ss_pred             eEEEEEeccccccccCC--C---CCCcEEEEEEeCCCCCcceeecccccCCCC--CccccEEEEcccCc-----------
Q psy12482        275 SLHVLIKEAKSLCPVKS--N---TVDAFCKAYLLPDKGRASKHKTGIIKRSTS--PQWNHTVVYRDVSL-----------  336 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~--~---~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n--P~wne~f~f~~v~~-----------  336 (419)
                      .|+|.|++|+|++..+.  .   .+||||++.+.+.  ...+++|.++++++|  |+||+.|.|+ ++.           
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~   77 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIK   77 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEe
Confidence            48999999999775443  2   5999999999764  467899999999999  9999999997 655           


Q ss_pred             ----------cccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcC
Q psy12482        337 ----------EELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHY  373 (419)
Q Consensus       337 ----------~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~  373 (419)
                                +.+....|.|+|||.|.+++|++||.++|+|..+...
T Consensus        78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~  124 (133)
T cd08374          78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP  124 (133)
T ss_pred             eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence                      5566788999999999999999999999999875433

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.63  E-value=3.4e-15  Score=120.44  Aligned_cols=118  Identities=26%  Similarity=0.353  Sum_probs=90.2

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      ..|.|+|.+|+ |...+.. +.+||||+|++...    ...+|++++++.||+|||+|.|.+..    ...|.|+|||++
T Consensus         2 ~~L~V~i~~a~-l~~~~~~-~~~dPyv~v~~~~~----~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~   71 (125)
T cd04021           2 SQLQITVESAK-LKSNSKS-FKPDPYVEVTVDGQ----PPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHH   71 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcC-CCCCeEEEEEECCc----ccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCC
Confidence            36899999998 5555545 78999999999521    36899999999999999999999754    348999999999


Q ss_pred             CCCCCceeEEEEEeCcccccCCC-----CCceecCccccchhhhhhccccceEEEE
Q psy12482        202 MFGRNDFLGEVMMSLENKVFDDP-----SPKCYPLQERSEILDELICSKGELIIGL  252 (419)
Q Consensus       202 ~~~~~~~iG~~~~~l~~~~~~~~-----~~~w~~L~~~~~~~~~~~~~~G~l~l~l  252 (419)
                      ..+++++||++.++|.++.....     ...|+++......   .....|+|.+.+
T Consensus        72 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G~~~~~~  124 (125)
T cd04021          72 TLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKG---SSVKVGELTVIL  124 (125)
T ss_pred             CCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCC---cceeeeeEEEEe
Confidence            99899999999999998754322     2247887654421   234458887754

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.62  E-value=1.4e-15  Score=122.99  Aligned_cols=93  Identities=20%  Similarity=0.363  Sum_probs=77.4

Q ss_pred             eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeeccccc-CCCCCccccEEEEcccCcccc--ccCeEEEEEEE
Q psy12482        275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIK-RSTSPQWNHTVVYRDVSLEEL--SERCLELTVWD  350 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~-~t~nP~wne~f~f~~v~~~~~--~~~~l~i~V~d  350 (419)
                      .|+|+|++|++|+..+.. .+||||+|.+..    ..+++|++.. ++.||+|||.|.|. ++...+  ....|.|+|||
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d   75 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYC   75 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEE
Confidence            389999999999998876 899999999953    3457888875 58999999999996 655432  34669999999


Q ss_pred             CCCCCCCceeEEEEEeCCCCCc
Q psy12482        351 HDRLTSNEFLGGIRLNLGHGKH  372 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~~~  372 (419)
                      ++.++++++||.+.|++.++..
T Consensus        76 ~~~~~~~~~lG~~~i~l~~l~~   97 (125)
T cd04051          76 ERPSLGDKLIGEVRVPLKDLLD   97 (125)
T ss_pred             CCCCCCCCcEEEEEEEHHHhhc
Confidence            9998899999999999988543

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>KOG1326|consensus

Probab=99.62  E-value=1.2e-15  Score=152.22  Aligned_cols=244  Identities=24%  Similarity=0.380  Sum_probs=163.1

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      -.++|+|++|-+|.+.|.+ |.+||||++.++.   +...-+...+.+|+||+|++.|.+....  .....+.+.|||+|
T Consensus       613 ~LvrVyvv~A~~L~p~D~n-g~adpYv~l~lGk---~~~~d~~~yip~tlnPVfgkmfel~~~l--p~ek~l~v~vyd~D  686 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGN-GDADPYVKLLLGK---KRTLDRAHYIPNTLNPVFGKMFELECLL--PFEKDLIVEVYDHD  686 (1105)
T ss_pred             eeEEEEEEEeeeccccCCC-CCcCceeeeeecc---chhhhhhhcCcCCCCcHHHHHHHhhccc--chhhcceeEEEEee
Confidence            4577999999999999998 9999999999962   2223577788999999999987776433  23558999999999


Q ss_pred             CCCCCceeEEEEEeCcccccC--------------CCCCceecCccccchhhhh--------------------------
Q psy12482        202 MFGRNDFLGEVMMSLENKVFD--------------DPSPKCYPLQERSEILDEL--------------------------  241 (419)
Q Consensus       202 ~~~~~~~iG~~~~~l~~~~~~--------------~~~~~w~~L~~~~~~~~~~--------------------------  241 (419)
                      ..++++.||+..++|++--..              .....|+.-.+........                          
T Consensus       687 ~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~~  766 (1105)
T KOG1326|consen  687 LEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESDI  766 (1105)
T ss_pred             cccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhhh
Confidence            999999999999999863110              1123344322222211110                          


Q ss_pred             -----------------------------------------------hccccceEEEEEEeCCCCCccccccccCCCCcc
Q psy12482        242 -----------------------------------------------ICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKG  274 (419)
Q Consensus       242 -----------------------------------------------~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~  274 (419)
                                                                     .-.+|++.+=+.+.|.....+.-......+...
T Consensus       767 ~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~  846 (1105)
T KOG1326|consen  767 YDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKY  846 (1105)
T ss_pred             hcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhe
Confidence                                                           011112222111222111111111222344568


Q ss_pred             eEEEEEeccccccccCCC-----CCCcEEEEEEeCCCCCcceeecccccCCCC--CccccEEEEc--ccCccccc-----
Q psy12482        275 SLHVLIKEAKSLCPVKSN-----TVDAFCKAYLLPDKGRASKHKTGIIKRSTS--PQWNHTVVYR--DVSLEELS-----  340 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-----~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n--P~wne~f~f~--~v~~~~~~-----  340 (419)
                      .++|.|+.-.++...|.+     ++|.||+-.+.++  ...+++|.++++++.  -.||-.|.|+  -.+.++++     
T Consensus       847 ~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gd--ee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kk  924 (1105)
T KOG1326|consen  847 ELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGD--EEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKK  924 (1105)
T ss_pred             eEEEEEeeccceeecCccceeeeccceEEecccccc--hhhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhh
Confidence            899999999988776653     7999999998643  356799999998763  4677666664  12222221     


Q ss_pred             -------------cCeEEEEEEECCCCCCCceeEEEEEeCCCCCcC
Q psy12482        341 -------------ERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHY  373 (419)
Q Consensus       341 -------------~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~  373 (419)
                                   ...|.|+|||.|.+++|++||..+|+|++.+..
T Consensus       925 e~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~p  970 (1105)
T KOG1326|consen  925 EYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAP  970 (1105)
T ss_pred             hhccccccccccCchheEEEecccCccChhhhhhheeechhhCcCC
Confidence                         233999999999999999999999999985433

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.62  E-value=2.8e-15  Score=121.17  Aligned_cols=91  Identities=26%  Similarity=0.350  Sum_probs=77.7

Q ss_pred             ceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        274 GSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      |.|.|+|++|+||+..+..  .+||||++.+...   ...++|+++.++.||+|||.|.|. +.   .....|.|+|||+
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~-v~---~~~~~l~~~v~d~   74 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYIL-VN---SLTEPLNLTVYDF   74 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEE-eC---CCCCEEEEEEEec
Confidence            7899999999999976543  6899999999532   456899999999999999999996 54   2245699999999


Q ss_pred             CCCCCCceeEEEEEeCCCCC
Q psy12482        352 DRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~~~  371 (419)
                      +..+++++||.+.++++++.
T Consensus        75 ~~~~~d~~iG~~~~~l~~l~   94 (124)
T cd04044          75 NDKRKDKLIGTAEFDLSSLL   94 (124)
T ss_pred             CCCCCCceeEEEEEEHHHhc
Confidence            99989999999999998854

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.62  E-value=3.8e-15  Score=121.14  Aligned_cols=93  Identities=20%  Similarity=0.290  Sum_probs=75.5

Q ss_pred             eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCC--------cceeecccccCCCCCcc-ccEEEEcccCccccccCeE
Q psy12482        275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGR--------ASKHKTGIIKRSTSPQW-NHTVVYRDVSLEELSERCL  344 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~--------~~~~~T~~~~~t~nP~w-ne~f~f~~v~~~~~~~~~l  344 (419)
                      .+.|++++|+||+ .+.. ++||||++.+.++...        ..+++|.++++++||+| ||.|.|. +..+    ..|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~~~----~~L   75 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GLPT----DVL   75 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cCCC----CEE
Confidence            4679999999998 5555 9999999999754432        35799999999999999 9999996 6433    459


Q ss_pred             EEEEEECCCCCC---CceeEEEEEeCCCCCcC
Q psy12482        345 ELTVWDHDRLTS---NEFLGGIRLNLGHGKHY  373 (419)
Q Consensus       345 ~i~V~d~~~~~~---~~~lG~~~i~l~~~~~~  373 (419)
                      .|+|||++..++   +++||++.|+++++...
T Consensus        76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~  107 (137)
T cd08691          76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLER  107 (137)
T ss_pred             EEEEEecCCCCCccCCceEEEEEEEHHHhccc
Confidence            999999876544   79999999999886433

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.61  E-value=1.1e-15  Score=123.91  Aligned_cols=93  Identities=20%  Similarity=0.252  Sum_probs=74.4

Q ss_pred             EeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCce
Q psy12482        280 IKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEF  359 (419)
Q Consensus       280 v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~  359 (419)
                      |++|+||+. -.+.+||||+|.+..     .+++|++++++.||+|||.|.|+ +.........|.|+|||++..+++++
T Consensus         2 vi~a~~L~~-~~g~~Dpyv~v~~~~-----~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~~   74 (127)
T cd08373           2 VVSLKNLPG-LKGKGDRIAKVTFRG-----VKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNRL   74 (127)
T ss_pred             eEEeeCCcc-cCCCCCCEEEEEECC-----EeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCce
Confidence            788999998 333899999999832     35899999999999999999996 54322445779999999999999999


Q ss_pred             eEEEEEeCCCCCcCCceeec
Q psy12482        360 LGGIRLNLGHGKHYSKLVDW  379 (419)
Q Consensus       360 lG~~~i~l~~~~~~~~~~~w  379 (419)
                      ||++.++++++..++....|
T Consensus        75 iG~~~~~l~~l~~~~~~~~~   94 (127)
T cd08373          75 IGSATVSLQDLVSEGLLEVT   94 (127)
T ss_pred             EEEEEEEhhHcccCCceEEE
Confidence            99999999986544333333

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN03008 Phospholipase D delta

Probab=99.60  E-value=5.5e-15  Score=148.13  Aligned_cols=109  Identities=24%  Similarity=0.382  Sum_probs=91.1

Q ss_pred             CCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCccccc
Q psy12482        142 QRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF  221 (419)
Q Consensus       142 ~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~  221 (419)
                      +.+||||+|.+..    .++.||++++++.||+|||+|.|.+...   ...|.|.|||++.++ +++||++.|+++++..
T Consensus        75 ~tSDPYV~I~Lg~----~rv~RTrVi~n~~NPvWNE~F~f~vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~  146 (868)
T PLN03008         75 ITSDPYVTVVVPQ----ATLARTRVLKNSQEPLWDEKFNISIAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIAS  146 (868)
T ss_pred             CCCCceEEEEECC----cceeeEEeCCCCCCCCcceeEEEEecCC---CceEEEEEEcCCccC-CceeEEEEEEHHHcCC
Confidence            4679999999942    2256999999999999999999998762   348999999999996 6899999999999988


Q ss_pred             CCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCc
Q psy12482        222 DDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSS  261 (419)
Q Consensus       222 ~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~  261 (419)
                      +.....|++|......   ..+..|+|+|++.|.|.....
T Consensus       147 Ge~vd~Wl~Ll~~~~k---p~k~~~kl~v~lqf~pv~~~~  183 (868)
T PLN03008        147 GERISGWFPVLGASGK---PPKAETAIFIDMKFTPFDQIH  183 (868)
T ss_pred             CCceEEEEEccccCCC---CCCCCcEEEEEEEEEEccccc
Confidence            8889999999776542   234558999999999887644

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.59  E-value=1.2e-14  Score=117.58  Aligned_cols=87  Identities=18%  Similarity=0.344  Sum_probs=74.8

Q ss_pred             cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      ...|+|+|++|++|+..+.. .+||||++.+..     .+++|++++++.||+|||.|.|. +.  . ....|.|+|||+
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~v~~~t~nP~Wne~f~f~-~~--~-~~~~l~i~V~d~   72 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-----ESVRSPVQKDTLSPEFDTQAIFY-RK--K-PRSPIKIQVWNS   72 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-----EEEEeCccCCCCCCcccceEEEE-ec--C-CCCEEEEEEEEC
Confidence            47899999999999998877 899999999742     35899999999999999999995 32  2 245699999999


Q ss_pred             CCCCCCceeEEEEEeCCC
Q psy12482        352 DRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~  369 (419)
                      +..+ +++||.+.++++.
T Consensus        73 ~~~~-d~~lG~~~~~l~~   89 (126)
T cd04046          73 NLLC-DEFLGQATLSADP   89 (126)
T ss_pred             CCCC-CCceEEEEEeccc
Confidence            9875 8999999999976

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.59  E-value=6.1e-15  Score=116.45  Aligned_cols=91  Identities=20%  Similarity=0.271  Sum_probs=75.0

Q ss_pred             EEEEeccccccccCCC-CCCcEEEEEEeCCC-CCcceeecccccCCCCCccccEEEEcccCccccc----cCeEEEEEEE
Q psy12482        277 HVLIKEAKSLCPVKSN-TVDAFCKAYLLPDK-GRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS----ERCLELTVWD  350 (419)
Q Consensus       277 ~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~-~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~----~~~l~i~V~d  350 (419)
                      .+..++|++|+.++.. .+||||+|.+.++. .....++|+++++++||+|| .|.|+   ...++    ...|.|+|||
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~---~~~l~~~~~~~~l~~~V~d   78 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP---LQKLCNGDYDRPIKIEVYD   78 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE---HHHhcCCCcCCEEEEEEEE
Confidence            4566799999999987 89999999987543 33457899999999999999 67764   33443    4679999999


Q ss_pred             CCCCCCCceeEEEEEeCCCCC
Q psy12482        351 HDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      ++..+++++||++.++++++.
T Consensus        79 ~d~~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          79 YDSSGKHDLIGEFETTLDELL   99 (110)
T ss_pred             eCCCCCCcEEEEEEEEHHHHh
Confidence            999999999999999998753

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG1011|consensus

Probab=99.58  E-value=9e-14  Score=132.82  Aligned_cols=121  Identities=23%  Similarity=0.413  Sum_probs=99.3

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      +..++++|+.|.+|.+.|.. |.+||||.+.++     ..+++|+++...+||+|||.|.|.....   ...|.+.|||.
T Consensus       294 sakitltvlcaqgl~akdkt-g~sdpyvt~qv~-----ktkrrtrti~~~lnpvw~ekfhfechns---tdrikvrvwde  364 (1283)
T KOG1011|consen  294 SAKITLTVLCAQGLIAKDKT-GKSDPYVTAQVG-----KTKRRTRTIHQELNPVWNEKFHFECHNS---TDRIKVRVWDE  364 (1283)
T ss_pred             ceeeEEeeeecccceecccC-CCCCCcEEEeec-----ccchhhHhhhhccchhhhhheeeeecCC---CceeEEEEecC
Confidence            45789999999999999998 999999999997     5578999999999999999999997653   44899999998


Q ss_pred             CCC-----------CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482        201 DMF-----------GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVP  256 (419)
Q Consensus       201 ~~~-----------~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~  256 (419)
                      |.-           ..|+|||+..|.+..+  +++.+-||.|..+.+.    +...|.|++.+...-
T Consensus       365 d~dlksklrqkl~resddflgqtvievrtl--sgemdvwynlekrtdk----savsgairlhisvei  425 (1283)
T KOG1011|consen  365 DNDLKSKLRQKLTRESDDFLGQTVIEVRTL--SGEMDVWYNLEKRTDK----SAVSGAIRLHISVEI  425 (1283)
T ss_pred             cccHHHHHHHHhhhcccccccceeEEEEec--ccchhhhcchhhccch----hhccceEEEEEEEEE
Confidence            632           2689999999988764  5677889999887665    445688777765543

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.57  E-value=1.7e-14  Score=113.83  Aligned_cols=92  Identities=25%  Similarity=0.348  Sum_probs=75.8

Q ss_pred             EEEEEeecCCCCCCCCCCCCCcEEEEEEeCCC-CCCCeeecccccCCCCceeccEEEEEcccCccc----ccEEEEEEEe
Q psy12482        125 EIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK-SKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLE----CRTLWLSVWH  199 (419)
Q Consensus       125 ~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~----~~~l~i~v~d  199 (419)
                      .+..++|++|+..+.. +.+||||+|++.+.. .....++|++++++.||+|| .|.|.+  .++.    ...|.|+|||
T Consensus         3 ~~~~i~a~~L~~~d~~-~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~--~~l~~~~~~~~l~~~V~d   78 (110)
T cd04047           3 VELQFSGKKLDKKDFF-GKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPL--QKLCNGDYDRPIKIEVYD   78 (110)
T ss_pred             EEEEEEeCCCCCCCCC-CCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEH--HHhcCCCcCCEEEEEEEE
Confidence            4556789999999987 899999999997543 33346899999999999999 566654  2221    4599999999


Q ss_pred             cCCCCCCceeEEEEEeCcccc
Q psy12482        200 SDMFGRNDFLGEVMMSLENKV  220 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~  220 (419)
                      ++..+++++||++.++++++.
T Consensus        79 ~d~~~~d~~iG~~~~~l~~l~   99 (110)
T cd04047          79 YDSSGKHDLIGEFETTLDELL   99 (110)
T ss_pred             eCCCCCCcEEEEEEEEHHHHh
Confidence            999999999999999999976

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.56  E-value=2.2e-14  Score=116.66  Aligned_cols=95  Identities=26%  Similarity=0.405  Sum_probs=78.6

Q ss_pred             ceEEEEEeccccccccC--CC-CCCcEEEEEEeCCCC-CcceeecccccCCC-CCccccEEEEcccCccccccCeEEEEE
Q psy12482        274 GSLHVLIKEAKSLCPVK--SN-TVDAFCKAYLLPDKG-RASKHKTGIIKRST-SPQWNHTVVYRDVSLEELSERCLELTV  348 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~--~~-~~dpyV~v~~~~~~~-~~~~~~T~~~~~t~-nP~wne~f~f~~v~~~~~~~~~l~i~V  348 (419)
                      ..|+|+|++|+||+.++  .. ..||||++.+.+... ...+++|+++.++. ||+|||+|.|. +...+  ...|.|+|
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V   78 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVV   78 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEE
Confidence            47999999999999988  34 889999999976554 56778999988775 99999999996 54322  24699999


Q ss_pred             EECCCCCCCceeEEEEEeCCCCCc
Q psy12482        349 WDHDRLTSNEFLGGIRLNLGHGKH  372 (419)
Q Consensus       349 ~d~~~~~~~~~lG~~~i~l~~~~~  372 (419)
                      ||++.. ++++||.+.++++.+..
T Consensus        79 ~d~~~~-~~~~iG~~~~~l~~l~~  101 (128)
T cd00275          79 YDEDSG-DDDFLGQACLPLDSLRQ  101 (128)
T ss_pred             EeCCCC-CCcEeEEEEEEhHHhcC
Confidence            999988 89999999999987543

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.56  E-value=2.3e-14  Score=114.49  Aligned_cols=85  Identities=21%  Similarity=0.304  Sum_probs=70.6

Q ss_pred             EEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCC
Q psy12482        276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLT  355 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~  355 (419)
                      |.|+|++|+||+..  +.+||||+|.+.    +...++|+++++ .||+|||+|.|. ++..++....|.|.+||++..+
T Consensus         2 L~v~vi~a~~l~~~--~~~dpyv~v~~~----~~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~~   73 (117)
T cd08383           2 LRLRILEAKNLPSK--GTRDPYCTVSLD----QVEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSKD   73 (117)
T ss_pred             eEEEEEEecCCCcC--CCCCceEEEEEC----CEEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccCC
Confidence            78999999999987  678999999993    344578999998 999999999996 7766655567899999988777


Q ss_pred             CCceeEEEEEeCC
Q psy12482        356 SNEFLGGIRLNLG  368 (419)
Q Consensus       356 ~~~~lG~~~i~l~  368 (419)
                      ++..+|.+.|+..
T Consensus        74 ~~~~~g~v~l~~~   86 (117)
T cd08383          74 RDIVIGKVALSKL   86 (117)
T ss_pred             CeeEEEEEEecCc
Confidence            7788888777653

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.55  E-value=4.7e-14  Score=112.98  Aligned_cols=98  Identities=30%  Similarity=0.341  Sum_probs=82.9

Q ss_pred             EEEEEEEeecCCCCCC--CCCC--CCCcEEEEEEeCCCCCCCeeecccccCCCC--ceeccEEEEEccc-----------
Q psy12482        123 ALEIHVKQCKDLAPVD--TKRQ--RSDPYVKVYLLPDKSKAGKRKTRVKKHTLS--PVFDEVLKFQLTL-----------  185 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~--~~~~--~~dpyv~v~l~~~~~~~~~~kT~~~~~t~n--P~wne~f~f~v~~-----------  185 (419)
                      .|+|.|.+|++++..+  .. |  .+||||++.+.+..  ..+++|.++.+++|  |.||+.|.|.+..           
T Consensus         1 eLRViIw~~~~v~~~~~~~~-g~~~sD~yVK~~L~~~~--~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~   77 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNIT-GEKMSDIYVKGWLDGLE--EDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIK   77 (133)
T ss_pred             CEEEEEEECcCCcccccccC-CccccCeEEEEEEccCc--ccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEe
Confidence            3899999999966543  23 5  49999999998763  44789999999999  9999999999766           


Q ss_pred             ----------CcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCC
Q psy12482        186 ----------EDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD  223 (419)
Q Consensus       186 ----------~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~  223 (419)
                                +.+....|.++|||.|.++++++||+++++|..+....
T Consensus        78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence                      56677899999999999999999999999999865443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.53  E-value=5.3e-14  Score=105.38  Aligned_cols=85  Identities=38%  Similarity=0.711  Sum_probs=74.9

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |+|+|++|++|+..+.. +.++|||++.+.....  ..++|++++++.+|.|||.|.|.+......  .|.|+|||.+..
T Consensus         1 L~v~I~~a~~L~~~~~~-~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~--~l~~~V~~~~~~   75 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSN-GKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFPLDDPDLD--SLSFEVWDKDSF   75 (85)
T ss_dssp             EEEEEEEEESSSSSSTT-SSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEEESHGCGT--EEEEEEEEETSS
T ss_pred             CEEEEEEEECCCCcccC-Ccccccceeecceeee--eeeeeeeeeccccceeeeeeeeeeeccccc--ceEEEEEECCCC
Confidence            78999999999998766 7899999999986553  468999999999999999999997776655  599999999999


Q ss_pred             CCCceeEEEE
Q psy12482        204 GRNDFLGEVM  213 (419)
Q Consensus       204 ~~~~~iG~~~  213 (419)
                      +++++||++.
T Consensus        76 ~~~~~iG~~~   85 (85)
T PF00168_consen   76 GKDELIGEVK   85 (85)
T ss_dssp             SSEEEEEEEE
T ss_pred             CCCCEEEEEC
Confidence            8899999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.53  E-value=1.1e-13  Score=111.67  Aligned_cols=87  Identities=25%  Similarity=0.474  Sum_probs=72.4

Q ss_pred             ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482        274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD  352 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~  352 (419)
                      ..|.|+|.+|+ |...+.. .+||||+|.+.    ...+++|++++++.||+|||.|.|. +..    ...|.|+|||++
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~----~~~~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~   71 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD----GQPPKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHH   71 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC----CcccEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCC
Confidence            36899999998 5444445 89999999983    2246899999999999999999996 543    256999999999


Q ss_pred             CCCCCceeEEEEEeCCCC
Q psy12482        353 RLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       353 ~~~~~~~lG~~~i~l~~~  370 (419)
                      ..+++++||++.++|+++
T Consensus        72 ~~~~~~~iG~~~i~l~~l   89 (125)
T cd04021          72 TLKADVLLGEASLDLSDI   89 (125)
T ss_pred             CCCCCcEEEEEEEEHHHh
Confidence            999999999999999763

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.52  E-value=8.3e-15  Score=119.60  Aligned_cols=86  Identities=16%  Similarity=0.372  Sum_probs=69.8

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD  352 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~  352 (419)
                      ...|.|.|++|++|+.++    +|||.|.+    ++....||+++.++.||.|||.|.|.+.+.  .  ..|.|.|++.+
T Consensus        10 ~~sL~v~V~EAk~Lp~~~----~~Y~~i~L----d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~--~--~~l~v~v~k~~   77 (146)
T cd04013          10 ENSLKLWIIEAKGLPPKK----RYYCELCL----DKTLYARTTSKLKTDTLFWGEHFEFSNLPP--V--SVITVNLYRES   77 (146)
T ss_pred             EEEEEEEEEEccCCCCcC----CceEEEEE----CCEEEEEEEEEcCCCCCcceeeEEecCCCc--c--cEEEEEEEEcc
Confidence            467999999999998854    89999999    566678999999999999999999963332  2  45999997643


Q ss_pred             -CCC---CCceeEEEEEeCCCC
Q psy12482        353 -RLT---SNEFLGGIRLNLGHG  370 (419)
Q Consensus       353 -~~~---~~~~lG~~~i~l~~~  370 (419)
                       ..+   ++.+||.+.|++.++
T Consensus        78 ~~~~~~~~~~~IG~V~Ip~~~l   99 (146)
T cd04013          78 DKKKKKDKSQLIGTVNIPVTDV   99 (146)
T ss_pred             CccccccCCcEEEEEEEEHHHh
Confidence             332   578999999999774

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.52  E-value=5.2e-14  Score=105.41  Aligned_cols=84  Identities=27%  Similarity=0.535  Sum_probs=73.3

Q ss_pred             EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482        276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL  354 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~  354 (419)
                      |.|+|++|+||+..+.. ..||||++.+.....  ..++|++++++.+|.|||.|.|. +...+.  ..|.|+|||++..
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~--~~l~~~V~~~~~~   75 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFP-LDDPDL--DSLSFEVWDKDSF   75 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEE-ESHGCG--TEEEEEEEEETSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeee-eecccc--cceEEEEEECCCC
Confidence            78999999999998877 999999999976543  66999999999999999999996 665555  4499999999999


Q ss_pred             CCCceeEEEE
Q psy12482        355 TSNEFLGGIR  364 (419)
Q Consensus       355 ~~~~~lG~~~  364 (419)
                      +++++||+|.
T Consensus        76 ~~~~~iG~~~   85 (85)
T PF00168_consen   76 GKDELIGEVK   85 (85)
T ss_dssp             SSEEEEEEEE
T ss_pred             CCCCEEEEEC
Confidence            9999999984

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG0905|consensus

Probab=99.49  E-value=4.5e-14  Score=142.75  Aligned_cols=126  Identities=38%  Similarity=0.539  Sum_probs=115.4

Q ss_pred             eeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-c
Q psy12482        105 VIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-L  183 (419)
Q Consensus       105 ~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v  183 (419)
                      .++-|+|.++++|.  .+.|.|.|..|++|+-...+ ..+||||+.++.|+.++..++||+++++|.||.|||...|. +
T Consensus      1509 ~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg-~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~ 1585 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDG-QDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGF 1585 (1639)
T ss_pred             cccCceEEEEEEEc--CceEEEEhhhhcccccccCC-CCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCC
Confidence            34568999999998  89999999999999776654 78999999999999998889999999999999999999999 8


Q ss_pred             ccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       184 ~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      +.+.++.+.|+++||..+.+..+.++|.+.++|.++...++...||.|..
T Consensus      1586 p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1586 PKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             chhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            88888889999999999998899999999999999999999899999864

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.47  E-value=1.7e-13  Score=149.90  Aligned_cols=120  Identities=23%  Similarity=0.408  Sum_probs=98.8

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      -|.|+|+|++|+||. . .. +.+||||++.++.    ..++||++++++.||+|||.|.|.+.... ....|.|+|||+
T Consensus      1979 ~G~L~V~V~~a~nl~-~-~~-~~sdPyv~l~~g~----~~~~kTkvvk~~~nP~Wne~f~~~~~~p~-~~~~l~iev~d~ 2050 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK-Q-SM-GNTNAFCKLTLGN----GPPRQTKVVSHSSSPEWKEGFTWAFDSPP-KGQKLHISCKSK 2050 (2102)
T ss_pred             CcceEEEEeeccccc-c-cc-CCCCCeEEEEECC----CCcccccccCCCCCCCcccceeeeecCCC-CCCceEEEEEec
Confidence            589999999999998 3 33 7899999999973    22579999999999999999997764432 234799999999


Q ss_pred             CCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccc---eEEEEEEeC
Q psy12482        201 DMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGE---LIIGLKFVP  256 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~---l~l~l~~~~  256 (419)
                      |.+++ +.+|.+.+++.++...+....||+|.+.+.       ..|.   |.+.+.|.+
T Consensus      2051 d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~~~~-------k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2051 NTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNPESN-------KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             CccCC-CCCceEEEEHHHHhcCceeeeeeecCcccc-------cCCCcceEEEEEEecC
Confidence            99965 489999999999988889999999986432       2377   999988864

>KOG1326|consensus

Probab=99.44  E-value=4.1e-14  Score=141.46  Aligned_cols=90  Identities=23%  Similarity=0.301  Sum_probs=74.4

Q ss_pred             ceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECC
Q psy12482        274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD  352 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~  352 (419)
                      --++|.|.+|-+|.+.|.+ .+||||++.++.   ....-+...+.+|+||+|++.|.+.   ..-..+..+.++|||+|
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk---~~~~d~~~yip~tlnPVfgkmfel~---~~lp~ek~l~v~vyd~D  686 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK---KRTLDRAHYIPNTLNPVFGKMFELE---CLLPFEKDLIVEVYDHD  686 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeecc---chhhhhhhcCcCCCCcHHHHHHHhh---cccchhhcceeEEEEee
Confidence            3577999999999999999 999999999842   2234577888999999999998875   22223355999999999


Q ss_pred             CCCCCceeEEEEEeCCC
Q psy12482        353 RLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       353 ~~~~~~~lG~~~i~l~~  369 (419)
                      ..+.|+.+|+..|+|.+
T Consensus       687 ~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  687 LEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             cccccchhhceehhhhh
Confidence            99999999999999875

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.44  E-value=1.5e-13  Score=108.41  Aligned_cols=70  Identities=19%  Similarity=0.382  Sum_probs=59.2

Q ss_pred             CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        293 TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       293 ~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      .+||||+|.+    +....++|++++++.||+|||.|.|. +.  +.....|.|.|+|++.+ ++++||.+.++|+++
T Consensus        12 ~~dPYv~v~v----~~~~~~kT~v~~~t~nP~Wne~f~f~-v~--~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l   81 (111)
T cd04052          12 LLSPYAELYL----NGKLVYTTRVKKKTNNPSWNASTEFL-VT--DRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDL   81 (111)
T ss_pred             CCCceEEEEE----CCEEEEEEeeeccCCCCccCCceEEE-ec--CcCCCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence            7899999999    33345799999999999999999996 43  33456699999999998 899999999999774

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>PLN03008 Phospholipase D delta

Probab=99.44  E-value=6.1e-14  Score=140.76  Aligned_cols=69  Identities=20%  Similarity=0.365  Sum_probs=58.2

Q ss_pred             CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        293 TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       293 ~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      ++||||+|.+.    ...+.||++++++.||+|||.|.|. +.  +. ...|.|+|+|+|.++ +++||++.|++.++
T Consensus        76 tSDPYV~I~Lg----~~rv~RTrVi~n~~NPvWNE~F~f~-va--h~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L  144 (868)
T PLN03008         76 TSDPYVTVVVP----QATLARTRVLKNSQEPLWDEKFNIS-IA--HP-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDI  144 (868)
T ss_pred             CCCceEEEEEC----CcceeeEEeCCCCCCCCcceeEEEE-ec--CC-CceEEEEEEcCCccC-CceeEEEEEEHHHc
Confidence            67999999993    3446799999999999999999996 43  22 246999999999997 58999999999874

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.39  E-value=5.4e-13  Score=146.07  Aligned_cols=104  Identities=20%  Similarity=0.340  Sum_probs=84.0

Q ss_pred             CcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        272 AKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       272 ~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      -.|.|.|+|++|.||. .+.+.+||||++.+    +.+.++||++++++.||+|||.|.|. +... ..+..|.|+|||+
T Consensus      1978 ~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~----g~~~~~kTkvvk~~~nP~Wne~f~~~-~~~p-~~~~~l~iev~d~ 2050 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLK-QSMGNTNAFCKLTL----GNGPPRQTKVVSHSSSPEWKEGFTWA-FDSP-PKGQKLHISCKSK 2050 (2102)
T ss_pred             CCcceEEEEeeccccc-cccCCCCCeEEEEE----CCCCcccccccCCCCCCCcccceeee-ecCC-CCCCceEEEEEec
Confidence            3799999999999997 33348999999999    44556899999999999999999974 3221 1234499999999


Q ss_pred             CCCCCCceeEEEEEeCCCCCcCCceeecccCC
Q psy12482        352 DRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSS  383 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~  383 (419)
                      |.+++| .||++.|++.++..++....||...
T Consensus      2051 d~f~kd-~~G~~~i~l~~vv~~~~~~~~~~L~ 2081 (2102)
T PLN03200       2051 NTFGKS-SLGKVTIQIDRVVMEGTYSGEYSLN 2081 (2102)
T ss_pred             CccCCC-CCceEEEEHHHHhcCceeeeeeecC
Confidence            999654 8999999999987777777776654

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.36  E-value=9.6e-12  Score=95.95  Aligned_cols=95  Identities=37%  Similarity=0.661  Sum_probs=79.8

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |.|.|++|++|...... +..+|||++++.+.+  ....+|+++.++.||.|||.|.|.+....  ...|.|+||+.+..
T Consensus         2 l~i~i~~~~~l~~~~~~-~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~   76 (101)
T smart00239        2 LTVKIISARNLPKKDKK-GKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRF   76 (101)
T ss_pred             eEEEEEEeeCCCCCCCC-CCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCc
Confidence            68999999999987754 578999999998543  34689999999999999999999976644  56999999999887


Q ss_pred             CCCceeEEEEEeCcccccCC
Q psy12482        204 GRNDFLGEVMMSLENKVFDD  223 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~~~~  223 (419)
                      +.+.++|.+.+++.++....
T Consensus        77 ~~~~~~G~~~~~l~~~~~~~   96 (101)
T smart00239       77 GRDDFIGQVTIPLSDLLLGG   96 (101)
T ss_pred             cCCceeEEEEEEHHHcccCc
Confidence            78999999999998865443

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG0905|consensus

Probab=99.34  E-value=1.2e-12  Score=132.71  Aligned_cols=123  Identities=28%  Similarity=0.563  Sum_probs=112.2

Q ss_pred             cccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482        244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTS  322 (419)
Q Consensus       244 ~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n  322 (419)
                      ..|+|.+++.|.                 .+.|.|.|.-|++|+....+ ..||||+.++.++..+..++||+++++|.|
T Consensus      1511 iggqV~LsIsY~-----------------~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~ 1573 (1639)
T KOG0905|consen 1511 IGGQVKLSISYN-----------------NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRN 1573 (1639)
T ss_pred             cCceEEEEEEEc-----------------CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCC
Confidence            347999999997                 69999999999999877777 999999999999988999999999999999


Q ss_pred             CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCC
Q psy12482        323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSS  383 (419)
Q Consensus       323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~  383 (419)
                      |.|||.+.+..+|.+.+++..|.++||..+.+..+.+||.+.|+|.++...+..+.||...
T Consensus      1574 PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1574 PTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred             CchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence            9999999997789999998889999999999999999999999999987777777887753

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.34  E-value=8.9e-12  Score=96.14  Aligned_cols=94  Identities=30%  Similarity=0.449  Sum_probs=77.7

Q ss_pred             eEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482        275 SLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR  353 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~  353 (419)
                      .|.|.|++|++|...... ..+|||++.+...+  ....+|+++.++.||.|||.|.|+ +....  ...|.|+|||++.
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~   75 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDR   75 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCC
Confidence            378999999999887775 78999999996543  456899999998999999999996 54322  5679999999998


Q ss_pred             CCCCceeEEEEEeCCCCCcC
Q psy12482        354 LTSNEFLGGIRLNLGHGKHY  373 (419)
Q Consensus       354 ~~~~~~lG~~~i~l~~~~~~  373 (419)
                      .+.+.+||.+.+++.++...
T Consensus        76 ~~~~~~~G~~~~~l~~~~~~   95 (101)
T smart00239       76 FGRDDFIGQVTIPLSDLLLG   95 (101)
T ss_pred             ccCCceeEEEEEEHHHcccC
Confidence            88899999999998875433

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.33  E-value=1.5e-11  Score=94.62  Aligned_cols=101  Identities=39%  Similarity=0.602  Sum_probs=84.2

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      |.|.|++|++|...... ...+|||.+.+..    ....+|.+..++.||.||+.|.|.+...  ....|.|+||+.+..
T Consensus         1 l~v~i~~~~~l~~~~~~-~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~   73 (102)
T cd00030           1 LRVTVIEARNLPAKDLN-GKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRF   73 (102)
T ss_pred             CEEEEEeeeCCCCcCCC-CCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCC
Confidence            47899999999886654 7899999999974    2468999999999999999999997653  345899999999988


Q ss_pred             CCCceeEEEEEeCcccc-cCCCCCceecC
Q psy12482        204 GRNDFLGEVMMSLENKV-FDDPSPKCYPL  231 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~-~~~~~~~w~~L  231 (419)
                      +.+.+||.+.+++.++. .......|++|
T Consensus        74 ~~~~~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          74 SKDDFLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             CCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence            77899999999999987 55566778764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1328|consensus

Probab=99.32  E-value=1e-12  Score=127.29  Aligned_cols=112  Identities=32%  Similarity=0.499  Sum_probs=100.7

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCC--CCeeecccccCCCCceeccEEEEEccc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK--AGKRKTRVKKHTLSPVFDEVLKFQLTL  185 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~--~~~~kT~~~~~t~nP~wne~f~f~v~~  185 (419)
                      .|.+.+...|..+.+.|.|.|+.|+++.+.|.+ |.+||||.|.+.|....  ...++|+++++|+||+|+|+|+|.|+.
T Consensus       933 fg~lsvr~~y~~n~q~L~veVlhA~diipLD~N-GlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~ 1011 (1103)
T KOG1328|consen  933 FGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSN-GLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPP 1011 (1103)
T ss_pred             CCceEEEEEeeccccchhhhhhccccccccCCC-CCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCc
Confidence            688999999999999999999999999999998 99999999999865432  335799999999999999999999988


Q ss_pred             Cccc--ccEEEEEEEecCCCCCCceeEEEEEeCcccc
Q psy12482        186 EDLE--CRTLWLSVWHSDMFGRNDFLGEVMMSLENKV  220 (419)
Q Consensus       186 ~~l~--~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~  220 (419)
                      +.-.  .+.|.|+|+|+|.+..++|-|++.+.|+++.
T Consensus      1012 e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1012 EPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred             cccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence            7654  5689999999999999999999999999864

>PLN02223 phosphoinositide phospholipase C

Probab=99.30  E-value=1.1e-11  Score=119.93  Aligned_cols=111  Identities=17%  Similarity=0.203  Sum_probs=90.9

Q ss_pred             cceEEEEEecccccccc-----CCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEE
Q psy12482        273 KGSLHVLIKEAKSLCPV-----KSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLEL  346 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~-----~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i  346 (419)
                      ...|.|+|+.|++++..     +.. ..||||+|.+.+-.....+++|.+..++.||+|||.|.|+ +...++  ..|.|
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~-i~~PEL--AlLrf  484 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFP-LTYPDL--ALISF  484 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEE-EEccCc--eEEEE
Confidence            46799999999998521     222 6799999999765444456778777788999999999997 665565  77999


Q ss_pred             EEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchh
Q psy12482        347 TVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKE  386 (419)
Q Consensus       347 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~  386 (419)
                      +|+|+|..+.++++|+..|++..++.+.+..+.++..|..
T Consensus       485 ~V~D~D~~~~ddfiGQ~~LPv~~Lr~GyR~VpL~~~~g~~  524 (537)
T PLN02223        485 EVYDYEVSTADAFCGQTCLPVSELIEGIRAVPLYDERGKA  524 (537)
T ss_pred             EEEecCCCCCCcEEEEEecchHHhcCCceeEeccCCCcCC
Confidence            9999999889999999999999999998888888877753

>KOG1327|consensus

Probab=99.28  E-value=1.9e-11  Score=117.06  Aligned_cols=199  Identities=20%  Similarity=0.281  Sum_probs=141.4

Q ss_pred             cceeeecccCCCCcccceeeeceeeceeeccccccccCCCCcCcc----cccccCccCCcccccccccccccCCcccccc
Q psy12482          9 KRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAH----SEAGLNKSVSSILTDDDVTERLPHHNKSLLG   84 (419)
Q Consensus         9 k~kT~v~~~t~nP~wnE~f~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~   84 (419)
                      ..+|+++.+.+||.|-+.|..    .+.++..|...+.+++.+..    ...++.|+....+...-......        
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l----~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~--------  109 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLL----QYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLT--------  109 (529)
T ss_pred             ccceeeeeccCCccceeeech----hheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhh--------
Confidence            458999999999999999988    57888888888888888754    33344444222111111000000        


Q ss_pred             cccCCccccccCCCCCCCCceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEe-CCCCCCCeee
Q psy12482         85 ARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLL-PDKSKAGKRK  163 (419)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~-~~~~~~~~~k  163 (419)
                           .......      +.....|.|.+.+.-............+|++|...+.. +.+|||..++-. .++.....++
T Consensus       110 -----~~l~~~~------~~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f-~ksd~~l~~~~~~~d~s~~~~~~  177 (529)
T KOG1327|consen  110 -----GPLLLKP------GKNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFF-SKSDPYLEFYKRVDDGSTQMLYR  177 (529)
T ss_pred             -----hhhhccc------CccCCcccEEEEeecccccCceeeeeeeeeecCccccc-ccCCcceEEEEecCCCceeeccc
Confidence                 0000000      01123699999998888777777778889999999998 999999999876 4666666889


Q ss_pred             cccccCCCCceeccEEEEEcccCccc----ccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        164 TRVKKHTLSPVFDEVLKFQLTLEDLE----CRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       164 T~~~~~t~nP~wne~f~f~v~~~~l~----~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      |.+++++++|.|.+   |.++...+.    +..+.+.+||++..+++++||++..++.++........|....+.
T Consensus       178 tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~~~~~~~~~~~~~~  249 (529)
T KOG1327|consen  178 TEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQEPGSPNQIMLINPK  249 (529)
T ss_pred             cceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcccCCcccccccChh
Confidence            99999999999998   776666553    468999999999999999999999999887543333445444443

>cd00030 C2 C2 domain

Probab=99.25  E-value=4.2e-11  Score=92.15  Aligned_cols=89  Identities=31%  Similarity=0.520  Sum_probs=74.5

Q ss_pred             EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482        276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL  354 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~  354 (419)
                      |.|.|++|++|...... ..+|||.+.+.+    ....+|.++.++.||.|||.|.|+ +...  ....|.|+||+++..
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~   73 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRF   73 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCC
Confidence            46899999999876555 899999999854    456899999999999999999996 5432  345699999999988


Q ss_pred             CCCceeEEEEEeCCCCC
Q psy12482        355 TSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       355 ~~~~~lG~~~i~l~~~~  371 (419)
                      +.+.+||.+.+++..+.
T Consensus        74 ~~~~~ig~~~~~l~~l~   90 (102)
T cd00030          74 SKDDFLGEVEIPLSELL   90 (102)
T ss_pred             CCCceeEEEEEeHHHhh
Confidence            88999999999997743

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02223 phosphoinositide phospholipase C

Probab=99.23  E-value=1.2e-10  Score=112.67  Aligned_cols=108  Identities=19%  Similarity=0.296  Sum_probs=83.4

Q ss_pred             CEEEEEEEeecCCCCC-----CCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEE
Q psy12482        122 GALEIHVKQCKDLAPV-----DTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLS  196 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~-----~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~  196 (419)
                      ..|.|.|+.|.+++..     +.. ..+||||+|.+..-..-..+++|.+..++.||+|||+|.|.+...++.  .|+|.
T Consensus       409 ~~L~V~Visgq~~~~~~~k~~~~~-s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELA--lLrf~  485 (537)
T PLN02223        409 KILKVKIYMGDGWIVDFKKRIGRL-SKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLA--LISFE  485 (537)
T ss_pred             eEEEEEEEEcccccCCcccccCCC-CCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCce--EEEEE
Confidence            5799999999987521     122 467999999997322223356788888999999999999998877766  89999


Q ss_pred             EEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        197 VWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       197 v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      |+|+|..+++++||++.+|+..+..+-   .+.+|....
T Consensus       486 V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~  521 (537)
T PLN02223        486 VYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDER  521 (537)
T ss_pred             EEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCC
Confidence            999998888999999999999875432   456665543

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.21  E-value=5.2e-11  Score=117.53  Aligned_cols=111  Identities=21%  Similarity=0.257  Sum_probs=92.2

Q ss_pred             cceEEEEEecccccccc------CCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEE
Q psy12482        273 KGSLHVLIKEAKSLCPV------KSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLE  345 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~------~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~  345 (419)
                      ...|.|+|+.|.+++..      +.. ..||||+|.+.+-.....+++|++..++.||+|||.|.|+ +...++  ..|+
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~-l~vPEL--AllR  544 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFP-LAVPEL--ALLR  544 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEE-EEcCce--eEEE
Confidence            46799999999987532      222 4799999999864433455788888889999999999997 666666  7799


Q ss_pred             EEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchh
Q psy12482        346 LTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKE  386 (419)
Q Consensus       346 i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~  386 (419)
                      |.|+|+|..++++++|+..|++..++.+.+..+.++..|..
T Consensus       545 f~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V~L~~~~G~~  585 (598)
T PLN02230        545 VEVHEHDINEKDDFGGQTCLPVSEIRQGIHAVPLFNRKGVK  585 (598)
T ss_pred             EEEEECCCCCCCCEEEEEEcchHHhhCccceEeccCCCcCC
Confidence            99999999889999999999999999999999888888753

>PLN02952 phosphoinositide phospholipase C

Probab=99.19  E-value=9.3e-11  Score=115.95  Aligned_cols=110  Identities=24%  Similarity=0.299  Sum_probs=88.3

Q ss_pred             cceEEEEEeccccccccC------CC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEE
Q psy12482        273 KGSLHVLIKEAKSLCPVK------SN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLE  345 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~------~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~  345 (419)
                      ...|.|.|+.|.+|+...      .. ..||||+|.+.+-.....+++|+++.++.||+|||.|.|+ +...++  ..|.
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PEL--Allr  545 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPEL--ALLR  545 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCc--cEEE
Confidence            468999999999875321      11 3599999999764444567799999999999999999997 665555  6799


Q ss_pred             EEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCch
Q psy12482        346 LTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGK  385 (419)
Q Consensus       346 i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~  385 (419)
                      |.|+|+|..+.++++|++.|+++.++.+.+..+.++..|.
T Consensus       546 f~V~D~D~~~~ddfiGq~~lPv~~Lr~GyR~VpL~~~~G~  585 (599)
T PLN02952        546 IEVREYDMSEKDDFGGQTCLPVSELRPGIRSVPLHDKKGE  585 (599)
T ss_pred             EEEEecCCCCCCCeEEEEEcchhHhcCCceeEeCcCCCCC
Confidence            9999999988999999999999998887776666665553

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.19  E-value=7.9e-11  Score=116.07  Aligned_cols=111  Identities=18%  Similarity=0.223  Sum_probs=91.8

Q ss_pred             cceEEEEEeccccccc--c----CCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEE
Q psy12482        273 KGSLHVLIKEAKSLCP--V----KSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLE  345 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~--~----~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~  345 (419)
                      ...|.|+|+.|.+++.  .    +.. ..||||+|.+.+-.....+++|+++.++.||+|||.|.|+ +...++  ..|+
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~-i~~PeL--AllR  527 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFP-LTVPEL--ALLR  527 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEE-EEcCce--eEEE
Confidence            4679999999988531  1    122 5799999999754444556789999999999999999997 666666  7799


Q ss_pred             EEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchh
Q psy12482        346 LTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKE  386 (419)
Q Consensus       346 i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~  386 (419)
                      |.|+|+|..+.++++|+..|++..++.+.+..+.++..|..
T Consensus       528 f~V~d~D~~~~ddfigq~~lPv~~Lr~GyR~V~L~~~~g~~  568 (581)
T PLN02222        528 LEVHEYDMSEKDDFGGQTCLPVWELSQGIRAFPLHSRKGEK  568 (581)
T ss_pred             EEEEECCCCCCCcEEEEEEcchhhhhCccceEEccCCCcCC
Confidence            99999998888999999999999999999999998888854

>PLN02952 phosphoinositide phospholipase C

Probab=99.17  E-value=3.9e-10  Score=111.60  Aligned_cols=110  Identities=22%  Similarity=0.356  Sum_probs=85.4

Q ss_pred             CCEEEEEEEeecCCCCCCC--C---CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEE
Q psy12482        121 QGALEIHVKQCKDLAPVDT--K---RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL  195 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~--~---~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i  195 (419)
                      ...|.|.|+.|.+++....  .   ...+||||+|.+..-..-..+++|+++.++.||+|||+|.|.+...++.  .|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELA--llrf  546 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELA--LLRI  546 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCcc--EEEE
Confidence            4689999999998753211  1   0235999999997322223467899999999999999999998776655  8999


Q ss_pred             EEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        196 SVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       196 ~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      .|+|+|..+.++++|++.+++..+..+-   .|++|....
T Consensus       547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~  583 (599)
T PLN02952        547 EVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKK  583 (599)
T ss_pred             EEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCC
Confidence            9999998888999999999999875443   488886544

>KOG1327|consensus

Probab=99.16  E-value=6e-10  Score=106.98  Aligned_cols=186  Identities=21%  Similarity=0.307  Sum_probs=138.8

Q ss_pred             CeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC----CCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        160 GKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF----GRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       160 ~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~----~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      ...+|.++++.+||.|-+.|......+..+  .|++.+++.+..    ...+|+|++...+.++........-+.+.+. 
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ--~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~-  117 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKVQ--LLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPG-  117 (529)
T ss_pred             cccceeeeeccCCccceeeechhheeeeee--eEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccC-
Confidence            345899999999999999887776666655  899999987643    4678999999999887544433333333322 


Q ss_pred             chhhhhhccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEe-CCCCCcceee
Q psy12482        236 EILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLL-PDKGRASKHK  313 (419)
Q Consensus       236 ~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~-~~~~~~~~~~  313 (419)
                           .....|.|.+.+.=...               ......-..+|++|...|.. ++|||..+.-. +++.....++
T Consensus       118 -----~~~~~g~iti~aee~~~---------------~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~  177 (529)
T KOG1327|consen  118 -----KNAGSGTITISAEEDES---------------DNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYR  177 (529)
T ss_pred             -----ccCCcccEEEEeecccc---------------cCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccc
Confidence                 12345888776654332               23444555669999999988 99999998865 4566778899


Q ss_pred             cccccCCCCCccccEEEEcccCccccc----cCeEEEEEEECCCCCCCceeEEEEEeCCCCCc
Q psy12482        314 TGIIKRSTSPQWNHTVVYRDVSLEELS----ERCLELTVWDHDRLTSNEFLGGIRLNLGHGKH  372 (419)
Q Consensus       314 T~~~~~t~nP~wne~f~f~~v~~~~~~----~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~  372 (419)
                      |.+.+++++|.|-+.    .++...++    +.++.+.+||++.-++++++|.+.-++.....
T Consensus       178 tEv~~n~l~p~w~~~----~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  178 TEVVKNTLNPQWAPF----SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             cceeccCCCCccccc----ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence            999999999999874    25566665    36699999999999999999999988877543

>KOG1031|consensus

Probab=99.14  E-value=1.1e-10  Score=110.81  Aligned_cols=117  Identities=23%  Similarity=0.363  Sum_probs=97.1

Q ss_pred             cceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCCCccc-cEEEEcccCccccccCeEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWN-HTVVYRDVSLEELSERCLELTVW  349 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wn-e~f~f~~v~~~~~~~~~l~i~V~  349 (419)
                      .|.|.|.|..||+||.||..  ..|.||.|++..-.     ++|.+..+++||.|| +-|.|. +.-.++++..|.|+++
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t-----~ktdvf~kslnp~wnsdwfkfe-vddadlqdeplqi~ll   75 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTT-----FKTDVFLKSLNPQWNSDWFKFE-VDDADLQDEPLQIRLL   75 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccc-----eehhhhhhhcCCcccccceEEe-cChhhhccCCeeEEEe
Confidence            47899999999999999987  88999999996444     899999999999998 558996 8888999999999999


Q ss_pred             ECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCC
Q psy12482        350 DHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSS  410 (419)
Q Consensus       350 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~  410 (419)
                      |+|.++.++.||.|.|+++.+          ...     .=.+-....+.-|.+|+|+-.+
T Consensus        76 d~dtysandaigkv~i~idpl----------~~e-----~aaqavhgkgtvisgw~pifdt  121 (1169)
T KOG1031|consen   76 DHDTYSANDAIGKVNIDIDPL----------CLE-----EAAQAVHGKGTVISGWFPIFDT  121 (1169)
T ss_pred             cccccccccccceeeeccChH----------HHH-----hHHhhhcCCceEEeeeeeccee
Confidence            999999999999999999763          111     1123445566778888887655

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.13  E-value=8.1e-11  Score=84.13  Aligned_cols=102  Identities=23%  Similarity=0.267  Sum_probs=81.1

Q ss_pred             EEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCC
Q psy12482        125 EIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFG  204 (419)
Q Consensus       125 ~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~  204 (419)
                      -++|++|++|.-....+..+.-|++--+.-.+  --..||+++++..||+|+|+|.|.+...++++..|.|+|+.  ...
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~k--pv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~   77 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPK--PVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTP   77 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCC--CccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCC
Confidence            47889999998776653455667776554222  22579999999999999999999999999999999999998  456


Q ss_pred             CCceeEEEEEeCcccccCCCCCceecC
Q psy12482        205 RNDFLGEVMMSLENKVFDDPSPKCYPL  231 (419)
Q Consensus       205 ~~~~iG~~~~~l~~~~~~~~~~~w~~L  231 (419)
                      +.+.||.|.+++++ ...++..+|.++
T Consensus        78 RKe~iG~~sL~l~s-~geeE~~HW~e~  103 (103)
T cd08684          78 RKRTIGECSLSLRT-LSTQETDHWLEI  103 (103)
T ss_pred             ccceeeEEEeeccc-CCHHHhhhhhcC
Confidence            88999999999998 345566778653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1011|consensus

Probab=99.12  E-value=6.9e-11  Score=113.46  Aligned_cols=118  Identities=25%  Similarity=0.423  Sum_probs=88.5

Q ss_pred             CCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEE
Q psy12482        269 SSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELT  347 (419)
Q Consensus       269 ~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~  347 (419)
                      .......+.++|.+|.+|.+.|.. ++||||.+.++     ..+++|+++-..+||+|||.|.|.   . ......|++.
T Consensus       290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~-----ktkrrtrti~~~lnpvw~ekfhfe---c-hnstdrikvr  360 (1283)
T KOG1011|consen  290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-----KTKRRTRTIHQELNPVWNEKFHFE---C-HNSTDRIKVR  360 (1283)
T ss_pred             ccccceeeEEeeeecccceecccCCCCCCcEEEeec-----ccchhhHhhhhccchhhhhheeee---e-cCCCceeEEE
Confidence            344578999999999999999988 99999999873     445899999999999999999996   2 1223459999


Q ss_pred             EEECCC-----------CCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCce-EEeeeecc
Q psy12482        348 VWDHDR-----------LTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFW-VESCIPLR  408 (419)
Q Consensus       348 V~d~~~-----------~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~-i~~w~~l~  408 (419)
                      |||.|.           -.+|+|||+..|.+..            ++| +++-|+.+..+-++. +.+=..|+
T Consensus       361 vwded~dlksklrqkl~resddflgqtvievrt------------lsg-emdvwynlekrtdksavsgairlh  420 (1283)
T KOG1011|consen  361 VWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRT------------LSG-EMDVWYNLEKRTDKSAVSGAIRLH  420 (1283)
T ss_pred             EecCcccHHHHHHHHhhhcccccccceeEEEEe------------ccc-chhhhcchhhccchhhccceEEEE
Confidence            999764           2468999999998865            233 356677666654433 44444443

>PLN02228 Phosphoinositide phospholipase C

Probab=99.11  E-value=2.9e-10  Score=111.81  Aligned_cols=111  Identities=25%  Similarity=0.253  Sum_probs=92.0

Q ss_pred             cceEEEEEeccccccc---cC---CC-CCCcEEEEEEeCCCCCcceeecccccCCCCCcc-ccEEEEcccCccccccCeE
Q psy12482        273 KGSLHVLIKEAKSLCP---VK---SN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW-NHTVVYRDVSLEELSERCL  344 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~---~~---~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~w-ne~f~f~~v~~~~~~~~~l  344 (419)
                      ...|.|+|+.|++|+.   .+   .. ..||||+|.+.+-.....+++|+++.++.||+| ||.|.|+ +...++  ..|
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~-~~~pEL--A~l  506 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQ-LRVPEL--ALL  506 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEE-EEcCce--eEE
Confidence            4579999999998732   11   12 479999999976544456679999988899999 9999997 655566  679


Q ss_pred             EEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchh
Q psy12482        345 ELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKE  386 (419)
Q Consensus       345 ~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~  386 (419)
                      .|.|+|+|..+.++++|++.|+++.++.+.+..+.++..|..
T Consensus       507 Rf~V~D~d~~~~d~figq~~lPv~~Lr~GYR~VpL~~~~G~~  548 (567)
T PLN02228        507 WFKVQDYDNDTQNDFAGQTCLPLPELKSGVRAVRLHDRAGKA  548 (567)
T ss_pred             EEEEEeCCCCCCCCEEEEEEcchhHhhCCeeEEEccCCCCCC
Confidence            999999998888999999999999999999999998888864

>KOG0169|consensus

Probab=99.11  E-value=1.3e-10  Score=114.63  Aligned_cols=111  Identities=17%  Similarity=0.303  Sum_probs=93.9

Q ss_pred             eEEEEEecccccccc-CC---C-CCCcEEEEEEeCCCCCcceeecc-cccCCCCCccccEEEEcccCccccccCeEEEEE
Q psy12482        275 SLHVLIKEAKSLCPV-KS---N-TVDAFCKAYLLPDKGRASKHKTG-IIKRSTSPQWNHTVVYRDVSLEELSERCLELTV  348 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~-~~---~-~~dpyV~v~~~~~~~~~~~~~T~-~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V  348 (419)
                      .|.|.|+.|.+++.. +.   + .+||||.|.+.+-......++|+ +..++.||.|+|+|.|+ +..+++  +-|+|.|
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~-l~vPEL--AliRF~V  693 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQ-LSVPEL--ALIRFEV  693 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEE-Eeccce--eEEEEEE
Confidence            799999999976543 22   2 68999999987655556678899 55567899999999997 777777  7899999


Q ss_pred             EECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHH
Q psy12482        349 WDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEIL  388 (419)
Q Consensus       349 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~  388 (419)
                      +|+|..++|+|+|+..|++..++.+.++.+.++..|..+.
T Consensus       694 ~d~d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~~~G~~~~  733 (746)
T KOG0169|consen  694 HDYDYIGKDDFIGQTTLPVSELRQGYRHVPLLSREGEALS  733 (746)
T ss_pred             EecCCCCcccccceeeccHHHhhCceeeeeecCCCCcccc
Confidence            9999999999999999999999999999999998886543

>KOG1031|consensus

Probab=99.11  E-value=1.7e-10  Score=109.50  Aligned_cols=122  Identities=21%  Similarity=0.420  Sum_probs=102.8

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceec-cEEEEEcccCcccccEEEEEEEe
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFD-EVLKFQLTLEDLECRTLWLSVWH  199 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wn-e~f~f~v~~~~l~~~~l~i~v~d  199 (419)
                      .|.|.|.|..||+||-+|......|.||.|.+.     ...+||.+..+++||.|| +.|.|+|...+|++..|.|++.|
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~-----n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld   76 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFA-----NTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLD   76 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEec-----ccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEec
Confidence            367899999999999999764568999999997     457899999999999999 89999999999999999999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccCC----------CCCceecCccccchhhhhhccccceEEEEE
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVFDD----------PSPKCYPLQERSEILDELICSKGELIIGLK  253 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~~~----------~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~  253 (419)
                      +|..+.++.||.+.|+++.+-...          -...|+++.+.      ..+.+|+|.+-+.
T Consensus        77 ~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt------ihgirgeinvivk  134 (1169)
T KOG1031|consen   77 HDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT------IHGIRGEINVIVK  134 (1169)
T ss_pred             ccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee------cccccceeEEEEE
Confidence            999999999999999998763321          23579998764      3456688876554

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.09  E-value=1.2e-09  Score=108.08  Aligned_cols=110  Identities=19%  Similarity=0.271  Sum_probs=83.1

Q ss_pred             CCEEEEEEEeecCCCCCC-----CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEE
Q psy12482        121 QGALEIHVKQCKDLAPVD-----TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL  195 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~-----~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i  195 (419)
                      ...|.|.|+.+.+++...     .....+||||+|.+..-..-..+++|++..++.||+|||+|.|.+...+|.  .|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELA--llRf  545 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELA--LLRV  545 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCcee--EEEE
Confidence            367999999999875211     111357999999997322212356888888999999999999998777766  8999


Q ss_pred             EEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        196 SVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       196 ~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      .|+|+|..++++++|++.+|+..+..+-   ...+|....
T Consensus       546 ~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~  582 (598)
T PLN02230        546 EVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRK  582 (598)
T ss_pred             EEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCC
Confidence            9999998889999999999999874332   245565443

>PLN02270 phospholipase D alpha

Probab=99.09  E-value=9.4e-10  Score=111.02  Aligned_cols=130  Identities=13%  Similarity=0.219  Sum_probs=101.8

Q ss_pred             CCEEEEEEEeecCCCCCC-----------------CCCCCCCcEEEEEEeCCCCCCCeeecccccCC-CCceeccEEEEE
Q psy12482        121 QGALEIHVKQCKDLAPVD-----------------TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHT-LSPVFDEVLKFQ  182 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~-----------------~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t-~nP~wne~f~f~  182 (419)
                      -|.|.|+|.+|++|+.++                 ..++.+||||.|.+..    ....+|+++.+. .||.|||+|...
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~----a~v~rtr~~~~~~~~p~w~e~f~i~   82 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK----ARVGRTRKIENEPKNPRWYESFHIY   82 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC----cEEEEEeecCCCCCCCccccceEEe
Confidence            478999999999998631                 1125689999999953    346799999875 599999988887


Q ss_pred             cccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCc
Q psy12482        183 LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSS  261 (419)
Q Consensus       183 v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~  261 (419)
                      +...   -..+.|+|.|.+.+| ..+||.+.|+..++..+...+.|+++.......   ...-..|++++.|.|.....
T Consensus        83 ~ah~---~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p---~~~~~~~~~~~~f~~~~~~~  154 (808)
T PLN02270         83 CAHM---ASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNP---IHGGSKIHVKLQYFEVTKDR  154 (808)
T ss_pred             eccC---cceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCCCc---CCCCCEEEEEEEEEEcccCc
Confidence            7653   358999999999886 569999999999998888899999987655432   11224899999999876543

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.08  E-value=2.4e-10  Score=81.80  Aligned_cols=99  Identities=18%  Similarity=0.247  Sum_probs=80.4

Q ss_pred             EEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCC
Q psy12482        278 VLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLT  355 (419)
Q Consensus       278 v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~  355 (419)
                      ++|.+++||.-...-  ....|++..+.-.  +....||.++.++.||+|+|+|.|. +-..++++..|.|.|+.  .+.
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVFq-i~l~qL~~V~L~fsv~~--~~~   77 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVFA-IKLQNLQTVRLVFKIQT--QTP   77 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHHH-HHHhhccceEEEEEeec--cCC
Confidence            688999999765443  5667888766532  3345789999999999999999997 88899999999999998  566


Q ss_pred             CCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHH
Q psy12482        356 SNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQM  393 (419)
Q Consensus       356 ~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l  393 (419)
                      +.+.||.|.+++++            +...+..||.++
T Consensus        78 RKe~iG~~sL~l~s------------~geeE~~HW~e~  103 (103)
T cd08684          78 RKRTIGECSLSLRT------------LSTQETDHWLEI  103 (103)
T ss_pred             ccceeeEEEeeccc------------CCHHHhhhhhcC
Confidence            78999999999964            566799999763

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1264|consensus

Probab=99.08  E-value=7.2e-10  Score=109.07  Aligned_cols=126  Identities=19%  Similarity=0.324  Sum_probs=90.3

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeecccccCCCCceec-cEEEEEcccCcccccEEEEEEEe
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFD-EVLKFQLTLEDLECRTLWLSVWH  199 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wn-e~f~f~v~~~~l~~~~l~i~v~d  199 (419)
                      -.|.|.|+.||+|+...  ++...|||.|.+....--.. .++|.+..+++||+|| |.|.|.|...++.  .|+|.|++
T Consensus      1065 ~~lsv~vigaRHL~k~g--r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A--~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG--RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFA--FLRFVVYE 1140 (1267)
T ss_pred             eEEEEEEeeccccccCC--CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceE--EEEEEEec
Confidence            47899999999999554  36677999999974322223 4455567799999999 9999999887655  99999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCC
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPE  258 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~  258 (419)
                      .|.++...|||++..|+..+..+-   .-.+|.......-    ....|++.+...|..
T Consensus      1141 eDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl----ELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL----ELASLLVFIEMRPVL 1192 (1267)
T ss_pred             ccccCCcceeeeeecchhhhhccc---eeeecccCchhhh----hhhhheeeeEecccc
Confidence            999998889999999998764331   1233433222111    225566666666553

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.05  E-value=2.4e-09  Score=105.69  Aligned_cols=109  Identities=23%  Similarity=0.326  Sum_probs=81.5

Q ss_pred             CCEEEEEEEeecCCC--CC--CC-CCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEE
Q psy12482        121 QGALEIHVKQCKDLA--PV--DT-KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL  195 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~--~~--~~-~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i  195 (419)
                      ...|.|.|+.|.+++  ..  .. ....+||||+|.+..-..-..+++|+++.++.||+|||+|.|.+...++.  .|+|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLA--llRf  528 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELA--LLRL  528 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCcee--EEEE
Confidence            357999999998753  11  11 11357999999996322213467899999989999999999998777666  8999


Q ss_pred             EEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        196 SVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       196 ~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      .|+|+|..+.+++||++.+|+..+..+-   ...+|...
T Consensus       529 ~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~  564 (581)
T PLN02222        529 EVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSR  564 (581)
T ss_pred             EEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCC
Confidence            9999998888999999999999864332   24455444

>PLN02228 Phosphoinositide phospholipase C

Probab=99.04  E-value=3.5e-09  Score=104.29  Aligned_cols=128  Identities=19%  Similarity=0.319  Sum_probs=92.5

Q ss_pred             CCEEEEEEEeecCCCC---CCC--CCCCCCcEEEEEEeCCCCCCCeeecccccCCCCcee-ccEEEEEcccCcccccEEE
Q psy12482        121 QGALEIHVKQCKDLAP---VDT--KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVF-DEVLKFQLTLEDLECRTLW  194 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~---~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~w-ne~f~f~v~~~~l~~~~l~  194 (419)
                      ...|.|.|+.|++|+.   ...  .....||||+|.+.+-..-..+++|++++++.||+| ||+|.|.+...++.  .|+
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA--~lR  507 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELA--LLW  507 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCcee--EEE
Confidence            3479999999998732   111  113479999999873222234679999988899999 99999998777666  899


Q ss_pred             EEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        195 LSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       195 i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      |.|+|+|..+.+++||++.+++..+..+-   ...+|.......-    ..+.|.+.+.+.+.
T Consensus       508 f~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l----~~atLfv~~~~~~~  563 (567)
T PLN02228        508 FKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY----KNTRLLVSFALDPP  563 (567)
T ss_pred             EEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC----CCeEEEEEEEEcCc
Confidence            99999998888999999999999874321   2456654433211    12568888877664

>PLN02270 phospholipase D alpha

Probab=99.01  E-value=3.1e-10  Score=114.44  Aligned_cols=120  Identities=17%  Similarity=0.294  Sum_probs=94.2

Q ss_pred             cceEEEEEeccccccccC-----------------C--CCCCcEEEEEEeCCCCCcceeecccccCC-CCCccccEEEEc
Q psy12482        273 KGSLHVLIKEAKSLCPVK-----------------S--NTVDAFCKAYLLPDKGRASKHKTGIIKRS-TSPQWNHTVVYR  332 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~-----------------~--~~~dpyV~v~~~~~~~~~~~~~T~~~~~t-~nP~wne~f~f~  332 (419)
                      -|.|.|+|++|++|++++                 .  ..+||||.|.+    .+....||+++.+. .||.|||.|..+
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~----~~a~v~rtr~~~~~~~~p~w~e~f~i~   82 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL----EKARVGRTRKIENEPKNPRWYESFHIY   82 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe----CCcEEEEEeecCCCCCCCccccceEEe
Confidence            589999999999998631                 1  16799999999    56678899999884 699999999875


Q ss_pred             ccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCCCC
Q psy12482        333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLE  412 (419)
Q Consensus       333 ~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~~~  412 (419)
                         .-... ..|.|+|.|.+.+| ..+||.+.|+..+           -.+|.+++.|++++..-++++..--.|+.+.+
T Consensus        83 ---~ah~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~-----------~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~  146 (808)
T PLN02270         83 ---CAHMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEE-----------ILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQ  146 (808)
T ss_pred             ---eccCc-ceEEEEEecCCccC-ceEEEEEEEEHHH-----------hcCCCccccEEeccCCCCCcCCCCCEEEEEEE
Confidence               32332 55999999999998 5599999999987           35677788888888887777766555555543

>KOG0169|consensus

Probab=98.95  E-value=4.3e-09  Score=104.18  Aligned_cols=97  Identities=27%  Similarity=0.458  Sum_probs=78.0

Q ss_pred             EEEEEEEeecCCCCCCCC---CCCCCcEEEEEEeCCCCCCCeeecc-cccCCCCceeccEEEEEcccCcccccEEEEEEE
Q psy12482        123 ALEIHVKQCKDLAPVDTK---RQRSDPYVKVYLLPDKSKAGKRKTR-VKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVW  198 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~---~~~~dpyv~v~l~~~~~~~~~~kT~-~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~  198 (419)
                      .|.|.|+.+.+++.....   +..+||||.|.+..-..-....+|+ +..++-||.|+|+|.|.+...+|.  .|+|.|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELA--liRF~V~  694 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELA--LIRFEVH  694 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecccee--EEEEEEE
Confidence            699999999976553321   1457899988875222223467899 556899999999999999988887  8999999


Q ss_pred             ecCCCCCCceeEEEEEeCccccc
Q psy12482        199 HSDMFGRNDFLGEVMMSLENKVF  221 (419)
Q Consensus       199 d~~~~~~~~~iG~~~~~l~~~~~  221 (419)
                      |+|..++|+|+|+..+|+..+..
T Consensus       695 d~d~~~~ddF~GQ~tlP~~~L~~  717 (746)
T KOG0169|consen  695 DYDYIGKDDFIGQTTLPVSELRQ  717 (746)
T ss_pred             ecCCCCcccccceeeccHHHhhC
Confidence            99999999999999999998743

>KOG1264|consensus

Probab=98.95  E-value=2.9e-09  Score=104.88  Aligned_cols=121  Identities=16%  Similarity=0.212  Sum_probs=98.0

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCccee-ecccccCCCCCccc-cEEEEcccCccccccCeEEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKH-KTGIIKRSTSPQWN-HTVVYRDVSLEELSERCLELTVWD  350 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~-~T~~~~~t~nP~wn-e~f~f~~v~~~~~~~~~l~i~V~d  350 (419)
                      ...|.|.|+.||.|+....+...|||.|.+.+......++ +|.+..+.+||+|| |.|.|. |..+++  .-|+|.|+|
T Consensus      1064 p~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFe-I~nPe~--A~lRF~V~e 1140 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFE-IYNPEF--AFLRFVVYE 1140 (1267)
T ss_pred             ceEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEE-eeCCce--EEEEEEEec
Confidence            3678999999999995554466799999998765555544 55555678999999 999997 654444  779999999


Q ss_pred             CCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhC
Q psy12482        351 HDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMER  396 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~  396 (419)
                      .|.++...|||+++.++..|+.+-+.++.-+...++++.=.-|+.-
T Consensus      1141 eDmfs~~~FiaqA~yPv~~ik~GfRsVpLkN~ySEdlELaSLLv~i 1186 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKAIKSGFRSVPLKNGYSEDLELASLLVFI 1186 (1267)
T ss_pred             ccccCCcceeeeeecchhhhhccceeeecccCchhhhhhhhheeee
Confidence            9999999999999999999999988888888888877765544443

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.86  E-value=9.3e-09  Score=79.64  Aligned_cols=92  Identities=24%  Similarity=0.371  Sum_probs=69.8

Q ss_pred             EEEEEeccccccccC-------------CC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccC------
Q psy12482        276 LHVLIKEAKSLCPVK-------------SN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVS------  335 (419)
Q Consensus       276 l~v~v~~a~~L~~~~-------------~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~------  335 (419)
                      |.|.|++|.+|+++-             .. ..|+||++.+..- ...+.++|+++.++..|.||..++|+ .+      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl-~~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~~~   78 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFL-PEKELRRTRTVARSFCPEFNHHVEFP-CNLVVQRN   78 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccC-CCCceeeccchhhhcCCCccceEEEe-cccEEEcC
Confidence            468899999998641             12 5789999996432 24567999999999999999999997 44      


Q ss_pred             -------ccccccCeEEEEEEECCCC----------CCCceeEEEEEeCCC
Q psy12482        336 -------LEELSERCLELTVWDHDRL----------TSNEFLGGIRLNLGH  369 (419)
Q Consensus       336 -------~~~~~~~~l~i~V~d~~~~----------~~~~~lG~~~i~l~~  369 (419)
                             .+.|+...|.|+||+....          .+|-+||.+.|++.+
T Consensus        79 ~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~  129 (143)
T cd08683          79 SGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRD  129 (143)
T ss_pred             CCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHH
Confidence                   1335567799999996543          245589999999965

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.77  E-value=2.6e-08  Score=74.95  Aligned_cols=83  Identities=13%  Similarity=0.236  Sum_probs=65.3

Q ss_pred             EEEEEEeecCCCCCC---CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        124 LEIHVKQCKDLAPVD---TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       124 L~v~v~~a~~L~~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      |.|+|..|+|+...+   .. +.++|||.+.+..    ..+.+|++   +.||.|||.|.|.|..    ...+.|.|||.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~-~~~etyV~IKved----~~kaRTr~---srnd~WnE~F~i~Vdk----~nEiel~VyDk   68 (109)
T cd08689           1 LTITITSARDVDHIASPRFS-KRPETYVSIKVED----VERARTKP---SRNDRWNEDFEIPVEK----NNEEEVIVYDK   68 (109)
T ss_pred             CEEEEEEEecCccccchhhc-cCCCcEEEEEECC----EEEEeccC---CCCCcccceEEEEecC----CcEEEEEEEeC
Confidence            678999999998877   34 7789999999963    22577777   4799999999999832    44899999998


Q ss_pred             CCCCCCceeEEEEEeCccc
Q psy12482        201 DMFGRNDFLGEVMMSLENK  219 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~  219 (419)
                      .. ...-.||..-+.++++
T Consensus        69 ~~-~~~~Pi~llW~~~sdi   86 (109)
T cd08689          69 GG-DQPVPVGLLWLRLSDI   86 (109)
T ss_pred             CC-CeecceeeehhhHHHH
Confidence            53 2456788888887775

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.73  E-value=2.4e-08  Score=75.17  Aligned_cols=82  Identities=20%  Similarity=0.283  Sum_probs=63.8

Q ss_pred             EEEEEeccccccccCC---C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        276 LHVLIKEAKSLCPVKS---N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~---~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      |.|+|..||||...+.   . .+||||.+++    ....+.||++   +.||.|||.|.|+ +  +.  ...+.|.|||.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv----ed~~kaRTr~---srnd~WnE~F~i~-V--dk--~nEiel~VyDk   68 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKV----EDVERARTKP---SRNDRWNEDFEIP-V--EK--NNEEEVIVYDK   68 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEE----CCEEEEeccC---CCCCcccceEEEE-e--cC--CcEEEEEEEeC
Confidence            5789999999988773   3 7899999999    4455788887   4899999999996 5  22  35599999997


Q ss_pred             CCCCCCceeEEEEEeCCCC
Q psy12482        352 DRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~~  370 (419)
                      .. ...--+|..-|.+++|
T Consensus        69 ~~-~~~~Pi~llW~~~sdi   86 (109)
T cd08689          69 GG-DQPVPVGLLWLRLSDI   86 (109)
T ss_pred             CC-CeecceeeehhhHHHH
Confidence            54 2345688888887764

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG2060|consensus

Probab=98.72  E-value=6.4e-09  Score=94.56  Aligned_cols=126  Identities=25%  Similarity=0.450  Sum_probs=104.6

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      ..|+|++.+.  ...+.|.|.|++|++|......+..++|||+|++++.+.-..+.+|+..++|++|.|-+...|+-++ 
T Consensus       256 ~mg~iq~~~~--d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-  332 (405)
T KOG2060|consen  256 NMGDIQIALM--DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-  332 (405)
T ss_pred             ccccchhhhh--cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC-
Confidence            4677777654  5678999999999999887766567999999999988887888999999999999999888886433 


Q ss_pred             cccccEEEEEEEe-cCCCCCCceeEEEEEeCcccccCC-CCCceecCccccch
Q psy12482        187 DLECRTLWLSVWH-SDMFGRNDFLGEVMMSLENKVFDD-PSPKCYPLQERSEI  237 (419)
Q Consensus       187 ~l~~~~l~i~v~d-~~~~~~~~~iG~~~~~l~~~~~~~-~~~~w~~L~~~~~~  237 (419)
                        ....|.+.||. +..+..+.|+|.+++-+.++.... +...||+|.+....
T Consensus       333 --~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl  383 (405)
T KOG2060|consen  333 --PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSL  383 (405)
T ss_pred             --CccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCccC
Confidence              57799999995 466667789999999999998877 78899999876443

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.50  E-value=9.2e-08  Score=74.19  Aligned_cols=105  Identities=26%  Similarity=0.470  Sum_probs=77.2

Q ss_pred             EEEEEEeecCCCCCC-----------CC-CCCCCcEEEEEEe--CCCCCCCeeecccccCCCCceeccEEEEEccc----
Q psy12482        124 LEIHVKQCKDLAPVD-----------TK-RQRSDPYVKVYLL--PDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL----  185 (419)
Q Consensus       124 L~v~v~~a~~L~~~~-----------~~-~~~~dpyv~v~l~--~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~----  185 (419)
                      |.|.|++|.+|....           .. .-..|+||++.+.  ++++   .++|+++.++-.|.|+..++|.++.    
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e---~r~TrtVArSFcPeF~Hh~Efpc~lv~~~   77 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKE---LRRTRTVARSFCPEFNHHVEFPCNLVVQR   77 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCc---eeeccchhhhcCCCccceEEEecccEEEc
Confidence            467888888885421           00 0135899999864  4443   5899999999999999999998651    


Q ss_pred             ---------CcccccEEEEEEEecCCC----------CCCceeEEEEEeCccccc-CCCCCceecC
Q psy12482        186 ---------EDLECRTLWLSVWHSDMF----------GRNDFLGEVMMSLENKVF-DDPSPKCYPL  231 (419)
Q Consensus       186 ---------~~l~~~~l~i~v~d~~~~----------~~~~~iG~~~~~l~~~~~-~~~~~~w~~L  231 (419)
                               +.|....+.++||+...-          .+|-+||.+.||+.++.. ..+...||++
T Consensus        78 ~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          78 NSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             CCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence                     234567899999997432          245699999999998754 4578899985

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG2060|consensus

Probab=98.50  E-value=1.8e-07  Score=85.26  Aligned_cols=96  Identities=25%  Similarity=0.419  Sum_probs=81.3

Q ss_pred             CCCcceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEE
Q psy12482        270 SAAKGSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELT  347 (419)
Q Consensus       270 ~~~~~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~  347 (419)
                      ....|.|.|.|++|++|......  .++|||+|++..++.-.-+.+|+...+|.+|-+-+...|.    +......|.+.
T Consensus       265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~----~sp~~k~Lq~t  340 (405)
T KOG2060|consen  265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD----QSPPGKYLQGT  340 (405)
T ss_pred             hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc----cCCCccEEEEE
Confidence            44579999999999999876554  7899999999988877888999999999999998888884    34445679999


Q ss_pred             EE-ECCCCCCCceeEEEEEeCCC
Q psy12482        348 VW-DHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       348 V~-d~~~~~~~~~lG~~~i~l~~  369 (419)
                      || |+.++..+.|||.++|-+.+
T Consensus       341 v~gdygRmd~k~fmg~aqi~l~e  363 (405)
T KOG2060|consen  341 VWGDYGRMDHKSFMGVAQIMLDE  363 (405)
T ss_pred             EeccccccchHHHhhHHHHHhhh
Confidence            99 57888889999999998876

>PLN02352 phospholipase D epsilon

Probab=98.39  E-value=2.1e-06  Score=87.01  Aligned_cols=122  Identities=17%  Similarity=0.186  Sum_probs=86.2

Q ss_pred             CCEEEEEEEeecCCCCC----CCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEE
Q psy12482        121 QGALEIHVKQCKDLAPV----DTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLS  196 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~----~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~  196 (419)
                      -|.|.++|.+|+-+...    ...+...+|||.|.+..    ....+|   .+..||.|||+|...+...  .+..+.|+
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~----~~v~rt---~~~~~p~w~e~f~i~~ah~--~~~~~~f~   79 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN----KKVAKT---SHEYDRVWNQTFQILCAHP--LDSTITIT   79 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC----cEEecC---CCCCCCccccceeEEeeee--cCCcEEEE
Confidence            36777888888733221    11111239999999952    224566   5566999999887776553  23479999


Q ss_pred             EEecCCCCCCceeEEEEEeCcccccCCC-CCceecCccccchhhhhhccccceEEEEEEeCCCCC
Q psy12482        197 VWHSDMFGRNDFLGEVMMSLENKVFDDP-SPKCYPLQERSEILDELICSKGELIIGLKFVPPEDS  260 (419)
Q Consensus       197 v~d~~~~~~~~~iG~~~~~l~~~~~~~~-~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~  260 (419)
                      |.|     ...+||.+.|+..++..+.. .+.|+++........   .. ..|++++.|.|....
T Consensus        80 vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~---~~-~~~~~~~~~~~~~~~  135 (758)
T PLN02352         80 LKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN---PE-LKLRFMLWFRPAELE  135 (758)
T ss_pred             Eec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC---CC-CEEEEEEEEEEhhhC
Confidence            988     36899999999999877756 899999876554321   11 589999999988765

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=98.37  E-value=6e-05  Score=70.34  Aligned_cols=224  Identities=20%  Similarity=0.220  Sum_probs=150.9

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc-----cccEEEEEEE
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL-----ECRTLWLSVW  198 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l-----~~~~l~i~v~  198 (419)
                      +.|.|++|++.+....    -.-.+..++.     .....|..+..+..|.||....+++....+     ++..|++++|
T Consensus         2 ivl~i~egr~F~~~~~----~~~vv~a~~n-----g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~   72 (340)
T PF12416_consen    2 IVLSILEGRNFPQRPR----HPIVVEAKFN-----GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCF   72 (340)
T ss_pred             EEEEEecccCCCCCCC----ccEEEEEEeC-----CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEE
Confidence            6789999999987632    2456666775     345788899999999999999998665443     5678999999


Q ss_pred             ecC-CCCCCceeEEEEEeCccc---ccC--CCCCceecCccccchhhhhhccccceEEEEEEeCCCCCcc----------
Q psy12482        199 HSD-MFGRNDFLGEVMMSLENK---VFD--DPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSL----------  262 (419)
Q Consensus       199 d~~-~~~~~~~iG~~~~~l~~~---~~~--~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~----------  262 (419)
                      ..+ ..++.+.||.+.++|...   ...  .....||+|.......   ...+-+|.+++..........          
T Consensus        73 a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y---~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~  149 (340)
T PF12416_consen   73 AVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKY---KKHKPELLLSLSIEDDSKPQTPDFESFKAKP  149 (340)
T ss_pred             EecCCCCcceeccEEEEEccccccccccccccCCCeeEcccccccc---ccCCccEEEEEEEeccccccCCccccccccC
Confidence            987 566889999999999987   333  3557899997653321   345578999888765544210          


Q ss_pred             ccc----------------------------cccC---CCCcceEEEEEeccccccccC----CC---CCCcEEEEEEeC
Q psy12482        263 SSA----------------------------KKSS---SAAKGSLHVLIKEAKSLCPVK----SN---TVDAFCKAYLLP  304 (419)
Q Consensus       263 ~~~----------------------------~~~~---~~~~~~l~v~v~~a~~L~~~~----~~---~~dpyV~v~~~~  304 (419)
                      ...                            ...+   ......|.|++..|+||...-    ..   ...-|....+.+
T Consensus       150 ~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG  229 (340)
T PF12416_consen  150 APPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG  229 (340)
T ss_pred             CCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC
Confidence            000                            0001   122457889999999987661    11   245677777765


Q ss_pred             CCCCcceeecccccCCCCCcc--ccEEEEcccC--ccccc-----cCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        305 DKGRASKHKTGIIKRSTSPQW--NHTVVYRDVS--LEELS-----ERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       305 ~~~~~~~~~T~~~~~t~nP~w--ne~f~f~~v~--~~~~~-----~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      +.     ..|.......+|.|  ++...|. +.  ...+.     ...|.|.++.     .+..||.+.|++..+
T Consensus       230 n~-----Vt~~~F~~l~~~~f~~er~s~vR-irSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~L  293 (340)
T PF12416_consen  230 ND-----VTTEPFKSLSSPSFPPERASGVR-IRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPL  293 (340)
T ss_pred             cE-----eEeeeccccCCCCcCeeeeeEEe-ecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhc
Confidence            54     66677777788866  4443242 21  22221     3447788876     367899999999874

>PLN02352 phospholipase D epsilon

Probab=98.22  E-value=9.7e-07  Score=89.41  Aligned_cols=111  Identities=15%  Similarity=0.152  Sum_probs=77.0

Q ss_pred             cceEEEEEecccccccc----CC-C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEE
Q psy12482        273 KGSLHVLIKEAKSLCPV----KS-N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLEL  346 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~----~~-~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i  346 (419)
                      -|.|.++|.+|+-+...    +. + ..||||.|.+    .+....||   .+..||.|||.|..+   .....+..|.|
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~----~~~~v~rt---~~~~~p~w~e~f~i~---~ah~~~~~~~f   78 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI----GNKKVAKT---SHEYDRVWNQTFQIL---CAHPLDSTITI   78 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEe----CCcEEecC---CCCCCCccccceeEE---eeeecCCcEEE
Confidence            58888999998733221    11 1 3499999999    55566777   445699999999875   44444445999


Q ss_pred             EEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchh-HHHHHHHHhCCCceEEeeeeccCC
Q psy12482        347 TVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKE-ILLWQQMMERPNFWVESCIPLRSS  410 (419)
Q Consensus       347 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~-~~~W~~l~~~p~~~i~~w~~l~~~  410 (419)
                      +|.|     ...+||.+.|++.++           .+|.. ++.|++++..-++++.+ -.|+.+
T Consensus        79 ~vk~-----~~~~ig~~~~p~~~~-----------~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~  126 (758)
T PLN02352         79 TLKT-----KCSILGRFHIQAHQI-----------VTEASFINGFFPLIMENGKPNPE-LKLRFM  126 (758)
T ss_pred             EEec-----CCeEEEEEEEEHHHh-----------hCCCcccceEEEcccCCCCCCCC-CEEEEE
Confidence            9999     267999999999773           34533 77777777776666655 444444

>KOG3837|consensus

Probab=97.78  E-value=1.5e-05  Score=73.67  Aligned_cols=130  Identities=20%  Similarity=0.222  Sum_probs=98.3

Q ss_pred             cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc---------ccc
Q psy12482        120 KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED---------LEC  190 (419)
Q Consensus       120 ~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~---------l~~  190 (419)
                      ....|.+.|+++.+++..... -..|-||++.+.-......+.+|.+++.|.+|.|+|.|...|....         ..+
T Consensus       365 ~d~elel~ivrg~~~pvp~gp-~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr  443 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGP-MHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR  443 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCc-hhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence            456788999999988766532 3468899998752223345789999999999999999998876521         134


Q ss_pred             cEEEEEEEecCCC-CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482        191 RTLWLSVWHSDMF-GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVP  256 (419)
Q Consensus       191 ~~l~i~v~d~~~~-~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~  256 (419)
                      ..+.|++|+...+ .+|.++|.+.+.|.-+...-+....++|.+..+.      .-|.|.+.++...
T Consensus       444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~------vGGkLevKvRiR~  504 (523)
T KOG3837|consen  444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKA------VGGKLEVKVRIRQ  504 (523)
T ss_pred             cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccc------cCCeeEEEEEEec
Confidence            5799999998664 4688999999999988877788889998765443      2378888777653

>PLN02964 phosphatidylserine decarboxylase

Probab=97.62  E-value=0.00013  Score=73.65  Aligned_cols=87  Identities=17%  Similarity=0.215  Sum_probs=69.8

Q ss_pred             CCcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEE
Q psy12482        271 AAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWD  350 (419)
Q Consensus       271 ~~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d  350 (419)
                      .-.|...+++.+|+    |+  ..|+|..+..    -+..+.||.+.+.|.||+|||.-.|- +-....  ....|.|||
T Consensus        51 ~~~~~~~~~~~~~~----~~--~~~~~~~~~~----~g~~~f~t~~~~~~~~p~~~~~~~~~-~~~~~~--~~~~~~~~~  117 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK--FKDKWLACVS----FGEQTFRTETSDSTDKPVWNSEKKLL-LEKNGP--HLARISVFE  117 (644)
T ss_pred             cccCeEEEEeehhh----hc--cCCcEEEEEE----ecceeeeeccccccCCcccchhhceE-eccCCc--ceEEEEEEe
Confidence            33799999999997    33  2588876654    24557999999999999999998884 555554  336999999


Q ss_pred             CCCCCCCceeEEEEEeCCCC
Q psy12482        351 HDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~  370 (419)
                      ++.++.++++|.|.++|.++
T Consensus       118 ~~~~s~n~lv~~~e~~~t~f  137 (644)
T PLN02964        118 TNRLSKNTLVGYCELDLFDF  137 (644)
T ss_pred             cCCCCHHHhhhheeecHhhc
Confidence            99999999999999988764

>PLN02964 phosphatidylserine decarboxylase

Probab=97.61  E-value=8.7e-05  Score=74.95  Aligned_cols=88  Identities=17%  Similarity=0.204  Sum_probs=72.3

Q ss_pred             ccCCEEEEEEEeecCCCCCCCCCCCCCcEEE-EEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEE
Q psy12482        119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVK-VYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSV  197 (419)
Q Consensus       119 ~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~-v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v  197 (419)
                      +-.|.+.+++++|+    ++    ..|+|.. ++++     .+.+||.+.++|.||+||+...|.|...++.  ...|.|
T Consensus        51 ~~~~~~~~~~~~~~----~~----~~~~~~~~~~~g-----~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~  115 (644)
T PLN02964         51 DFSGIALLTLVGAE----MK----FKDKWLACVSFG-----EQTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISV  115 (644)
T ss_pred             cccCeEEEEeehhh----hc----cCCcEEEEEEec-----ceeeeeccccccCCcccchhhceEeccCCcc--eEEEEE
Confidence            44688899999987    33    2477754 4554     5589999999999999999999999888766  569999


Q ss_pred             EecCCCCCCceeEEEEEeCccccc
Q psy12482        198 WHSDMFGRNDFLGEVMMSLENKVF  221 (419)
Q Consensus       198 ~d~~~~~~~~~iG~~~~~l~~~~~  221 (419)
                      ||.+.++.++++|.|.++|.++..
T Consensus       116 ~~~~~~s~n~lv~~~e~~~t~f~~  139 (644)
T PLN02964        116 FETNRLSKNTLVGYCELDLFDFVT  139 (644)
T ss_pred             EecCCCCHHHhhhheeecHhhccH
Confidence            999999999999999998876543

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.51  E-value=0.0015  Score=54.35  Aligned_cols=93  Identities=15%  Similarity=0.158  Sum_probs=67.2

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCc-ceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRA-SKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWD  350 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~-~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d  350 (419)
                      ...++|.|.+|.++...+  .+|-||++.+..++... ....|..+.. .++.|||.+.|+ |...++. ++.|.|+||+
T Consensus         7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~~   82 (158)
T cd08398           7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSICS   82 (158)
T ss_pred             CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcc-cchhcCChhheEEEEEEE
Confidence            357899999999987532  57899999988754322 2234444443 679999999997 7777775 5669999999


Q ss_pred             CCCCC----CCceeEEEEEeCCC
Q psy12482        351 HDRLT----SNEFLGGIRLNLGH  369 (419)
Q Consensus       351 ~~~~~----~~~~lG~~~i~l~~  369 (419)
                      .....    ....||.+.+.|-+
T Consensus        83 ~~~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          83 VKGRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             EecccCCCCceEEEEEEEEEEEC
Confidence            65321    22569999999866

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.47  E-value=0.00083  Score=55.90  Aligned_cols=93  Identities=16%  Similarity=0.134  Sum_probs=68.0

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEE
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVW  198 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~  198 (419)
                      ...++|.|+.|.++...    ...+-||++.+-.+++... ...|+.+.. .++.|||...|+|...+| .++.|.|+||
T Consensus         7 ~~~~~v~i~~~~~~~~~----~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~   81 (158)
T cd08398           7 NSNLRIKILCATYVNVN----DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSIC   81 (158)
T ss_pred             CCCeEEEEEeeccCCCC----CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEE
Confidence            35689999999998864    2358999998876554432 234444443 679999999999887777 4678999999


Q ss_pred             ecCCCC----CCceeEEEEEeCcc
Q psy12482        199 HSDMFG----RNDFLGEVMMSLEN  218 (419)
Q Consensus       199 d~~~~~----~~~~iG~~~~~l~~  218 (419)
                      +.....    ....||.+.++|-+
T Consensus        82 ~~~~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          82 SVKGRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             EEecccCCCCceEEEEEEEEEEEC
Confidence            976421    23579999999866

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.41  E-value=0.00092  Score=55.98  Aligned_cols=96  Identities=18%  Similarity=0.243  Sum_probs=68.9

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCC-CcceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKG-RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWD  350 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~-~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d  350 (419)
                      ...++|.+..+.++...+....+-||++.+..++. ......|.......++.|||.+.|+ +...++. +..|.|+||+
T Consensus         7 ~~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~~   85 (156)
T cd08380           7 NFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIYA   85 (156)
T ss_pred             CCCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEEE
Confidence            35678888888888652222567889998876543 2333455444444689999999997 6666664 5679999999


Q ss_pred             CCCCC--CCceeEEEEEeCCC
Q psy12482        351 HDRLT--SNEFLGGIRLNLGH  369 (419)
Q Consensus       351 ~~~~~--~~~~lG~~~i~l~~  369 (419)
                      .+..+  ....||.+.++|-+
T Consensus        86 ~~~~~~~~~~~iG~~~~~lFd  106 (156)
T cd08380          86 VSEPGSKKEVPLGWVNVPLFD  106 (156)
T ss_pred             EecCCCCcceEEEEEeEEeEc
Confidence            76544  46899999999966

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.35  E-value=0.0014  Score=55.64  Aligned_cols=95  Identities=16%  Similarity=0.219  Sum_probs=69.6

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEE
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVW  198 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~  198 (419)
                      ...++|+|+.+.+|...+   ...+-||++.+-.+++... ...|+.+.....+.|||.+.|+|...+| .++.|.|.||
T Consensus         7 ~~~f~i~i~~~~~~~~~~---~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~   83 (173)
T cd08693           7 EEKFSITLHKISNLNAAE---RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIY   83 (173)
T ss_pred             CCCEEEEEEEeccCccCC---CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEE
Confidence            357899999999998622   4567899988876554432 3456655556779999999999888777 4678999999


Q ss_pred             ecCCCC----------------CCceeEEEEEeCcc
Q psy12482        199 HSDMFG----------------RNDFLGEVMMSLEN  218 (419)
Q Consensus       199 d~~~~~----------------~~~~iG~~~~~l~~  218 (419)
                      +.....                ....||.+.++|-+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             EecccccccccccccccccccCcceEEEEEeEEEEc
Confidence            875322                24688888888765

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.31  E-value=0.0013  Score=55.78  Aligned_cols=95  Identities=13%  Similarity=0.225  Sum_probs=69.1

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCc-ceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRA-SKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWD  350 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~-~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d  350 (419)
                      ...++|+|..+.+|.. .....+.||++.+..++... ....|..+.....+.|||.+.|+ +...+|. +..|.|+||+
T Consensus         7 ~~~f~i~i~~~~~~~~-~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~~   84 (173)
T cd08693           7 EEKFSITLHKISNLNA-AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIYE   84 (173)
T ss_pred             CCCEEEEEEEeccCcc-CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEEE
Confidence            3579999999999976 22257889999887654322 23456555545679999999997 8777775 5669999998


Q ss_pred             CCCCC----------------CCceeEEEEEeCCC
Q psy12482        351 HDRLT----------------SNEFLGGIRLNLGH  369 (419)
Q Consensus       351 ~~~~~----------------~~~~lG~~~i~l~~  369 (419)
                      .....                ....||.+.+.|-+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             ecccccccccccccccccccCcceEEEEEeEEEEc
Confidence            54321                24689999999865

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.27  E-value=0.0017  Score=54.33  Aligned_cols=95  Identities=23%  Similarity=0.294  Sum_probs=68.0

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCC-CeeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEEe
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKA-GKRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWH  199 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~-~~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d  199 (419)
                      ..++|.+..+.++.....  ...+-||.+.+..+++.. ....|.......++.|||...|.+...+| .++.|.|+||+
T Consensus         8 ~~~~i~i~~~~~~~~~~~--~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~   85 (156)
T cd08380           8 FNLRIKIHGITNINLLDS--EDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYA   85 (156)
T ss_pred             CCeEEEEEeeccccccCC--CceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence            467788888888765221  346788888887655432 23344444444789999999999777666 46789999999


Q ss_pred             cCCCC--CCceeEEEEEeCcc
Q psy12482        200 SDMFG--RNDFLGEVMMSLEN  218 (419)
Q Consensus       200 ~~~~~--~~~~iG~~~~~l~~  218 (419)
                      .+..+  .+..||.+.++|-+
T Consensus        86 ~~~~~~~~~~~iG~~~~~lFd  106 (156)
T cd08380          86 VSEPGSKKEVPLGWVNVPLFD  106 (156)
T ss_pred             EecCCCCcceEEEEEeEEeEc
Confidence            87554  46799999999866

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1265|consensus

Probab=97.10  E-value=0.00087  Score=68.00  Aligned_cols=89  Identities=21%  Similarity=0.469  Sum_probs=70.2

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEe--CCCCCCCeeeccccc-CCCCceec-cEEEEE-cccCcccccEEEE
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLL--PDKSKAGKRKTRVKK-HTLSPVFD-EVLKFQ-LTLEDLECRTLWL  195 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~--~~~~~~~~~kT~~~~-~t~nP~wn-e~f~f~-v~~~~l~~~~l~i  195 (419)
                      .+.+.|.|+++.=|..++.     ..||.|.+-  |.....+.++|++.. ++.||+|+ |.|.|. |-..+|.  .|+|
T Consensus       702 A~t~sV~VISgqFLSdrkv-----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRi  774 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRKV-----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRI  774 (1189)
T ss_pred             EeeEEEEEEeeeecccccc-----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchh--heee
Confidence            3578999999999977654     389999884  555555677888877 78999999 678887 5556665  8999


Q ss_pred             EEEecCCCCCCceeEEEEEeCcccc
Q psy12482        196 SVWHSDMFGRNDFLGEVMMSLENKV  220 (419)
Q Consensus       196 ~v~d~~~~~~~~~iG~~~~~l~~~~  220 (419)
                      .||+.+    ..+||+=.+++..+.
T Consensus       775 avyeEg----gK~ig~RIlpvd~l~  795 (1189)
T KOG1265|consen  775 AVYEEG----GKFIGQRILPVDGLN  795 (1189)
T ss_pred             eeeccC----Cceeeeeccchhccc
Confidence            999865    479999999988754

>KOG1265|consensus

Probab=97.04  E-value=0.0011  Score=67.21  Aligned_cols=94  Identities=20%  Similarity=0.321  Sum_probs=71.9

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCC--CCCcceeecccccC-CCCCccccE-EEEcccCccccccCeEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPD--KGRASKHKTGIIKR-STSPQWNHT-VVYRDVSLEELSERCLELTV  348 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~--~~~~~~~~T~~~~~-t~nP~wne~-f~f~~v~~~~~~~~~l~i~V  348 (419)
                      .+.+.|+|+.|.=|..++   +..||.|.+.+-  ....+.++|+++.+ +.||+|||. |.|..|...++  ..|+|.|
T Consensus       702 A~t~sV~VISgqFLSdrk---vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRiav  776 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK---VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIAV  776 (1189)
T ss_pred             EeeEEEEEEeeeeccccc---cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeeee
Confidence            578999999999886655   457999998643  33445678888875 679999854 88876777777  7899999


Q ss_pred             EECCCCCCCceeEEEEEeCCCCCcCCc
Q psy12482        349 WDHDRLTSNEFLGGIRLNLGHGKHYSK  375 (419)
Q Consensus       349 ~d~~~~~~~~~lG~~~i~l~~~~~~~~  375 (419)
                      |+..    ..+||+=.+++..+..+.+
T Consensus       777 yeEg----gK~ig~RIlpvd~l~~GYr  799 (1189)
T KOG1265|consen  777 YEEG----GKFIGQRILPVDGLNAGYR  799 (1189)
T ss_pred             eccC----CceeeeeccchhcccCcce
Confidence            9943    5789999998877655543

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.93  E-value=0.0037  Score=53.08  Aligned_cols=97  Identities=20%  Similarity=0.203  Sum_probs=69.5

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeeccccc----CCCCceeccEEEEEcccCcc-cccEEE
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKK----HTLSPVFDEVLKFQLTLEDL-ECRTLW  194 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~----~t~nP~wne~f~f~v~~~~l-~~~~l~  194 (419)
                      ...+.|+|..+.+++..... ...+-||.+.+..+++... ...|+...    -...+.|||...|.+...+| .++.|.
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~-~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~   85 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQ-SFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV   85 (171)
T ss_pred             cccEEEEEEEeecCChHHhh-ccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence            35688999999999877643 4578999999876654432 22333211    12357799999999877666 467999


Q ss_pred             EEEEecCCCC---------CCceeEEEEEeCcc
Q psy12482        195 LSVWHSDMFG---------RNDFLGEVMMSLEN  218 (419)
Q Consensus       195 i~v~d~~~~~---------~~~~iG~~~~~l~~  218 (419)
                      |++|+....+         .+..||.+.++|-+
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence            9999976543         35689999999866

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.91  E-value=0.0086  Score=50.73  Aligned_cols=79  Identities=14%  Similarity=0.231  Sum_probs=55.0

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEEe
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWH  199 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d  199 (419)
                      ...++|.|+.+..+. .+.. ....-||++.+..++......+|....-+.++.|||...|+|...+| ..+.|.|.||+
T Consensus         9 ~~~friki~~~~~~~-~~~~-~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~   86 (178)
T cd08399           9 DRKFRVKILGIDIPV-LPRN-TDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC   86 (178)
T ss_pred             CCCEEEEEEeecccC-cCCC-CceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence            346788888887433 2222 23456777777665544444466666667789999999999888777 46789999998


Q ss_pred             cC
Q psy12482        200 SD  201 (419)
Q Consensus       200 ~~  201 (419)
                      ..
T Consensus        87 ~~   88 (178)
T cd08399          87 GK   88 (178)
T ss_pred             Ee
Confidence            73

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.90  E-value=0.0043  Score=51.82  Aligned_cols=76  Identities=20%  Similarity=0.317  Sum_probs=58.2

Q ss_pred             CCCcEEEEEEeCCCCC-cceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482        293 TVDAFCKAYLLPDKGR-ASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWDHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       293 ~~dpyV~v~~~~~~~~-~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d~~~~~~~~~lG~~~i~l~~  369 (419)
                      .+|-||++.+..++.. .....|..+.-+..+.|||.+.|+ |...++. ++.|.|+||+.+..++...||.+.++|-+
T Consensus        29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            5788999998765432 223356656556678999999998 8777775 56799999998766667899999999866

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.89  E-value=0.0059  Score=51.72  Aligned_cols=95  Identities=15%  Similarity=0.191  Sum_probs=65.7

Q ss_pred             cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWD  350 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d  350 (419)
                      ...++|.|.++.+ +..+.+ ....||++.+..++.-....+|..+.-+.++.|||.+.|+ |...++. +..|.|+||+
T Consensus         9 ~~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~   86 (178)
T cd08399           9 DRKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYC   86 (178)
T ss_pred             CCCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECc-cccccCChhhEEEEEEEE
Confidence            3578888888873 344333 4457888877765433334456666666789999999997 8777775 5669999998


Q ss_pred             CCCCC----------------CCceeEEEEEeCCC
Q psy12482        351 HDRLT----------------SNEFLGGIRLNLGH  369 (419)
Q Consensus       351 ~~~~~----------------~~~~lG~~~i~l~~  369 (419)
                      .....                ....||-+.+.|-+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             EecCcccccccccccccccccccceEEEEEEEEEc
Confidence            52211                24578889998866

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.89  E-value=0.0042  Score=51.89  Aligned_cols=77  Identities=22%  Similarity=0.302  Sum_probs=59.8

Q ss_pred             CCCCcEEEEEEeCCCCCCC-eeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEEecCCCCCCceeEEEEEeCcc
Q psy12482        142 QRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWHSDMFGRNDFLGEVMMSLEN  218 (419)
Q Consensus       142 ~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~  218 (419)
                      ..++-||.+.+-.++.... ...|+.+.-+..+.|||...|.|...+| .++.|.|+||+.+..++...||.+.++|-+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            4578899998876554322 3366666666778999999999888777 467999999998766667899999999866

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.88  E-value=0.0036  Score=53.14  Aligned_cols=96  Identities=19%  Similarity=0.206  Sum_probs=69.1

Q ss_pred             cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcc-eeeccccc--C--CCCCccccEEEEcccCccccc-cCeEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRAS-KHKTGIIK--R--STSPQWNHTVVYRDVSLEELS-ERCLE  345 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~-~~~T~~~~--~--t~nP~wne~f~f~~v~~~~~~-~~~l~  345 (419)
                      ...+.|+|..+.+++..... ..|-||++.+..++.... ...|+...  +  ...+.|||.+.|+ +...++. +..|.
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL~   85 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRLV   85 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEEE
Confidence            46789999999999887665 688999999887543222 22333221  1  2357799999997 6666664 56799


Q ss_pred             EEEEECCCCC---------CCceeEEEEEeCCC
Q psy12482        346 LTVWDHDRLT---------SNEFLGGIRLNLGH  369 (419)
Q Consensus       346 i~V~d~~~~~---------~~~~lG~~~i~l~~  369 (419)
                      |+||+....+         ....||.+.+.|-+
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence            9999965543         35789999999966

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.83  E-value=0.015  Score=47.84  Aligned_cols=132  Identities=13%  Similarity=0.161  Sum_probs=88.4

Q ss_pred             cCCEEEEEEEeecCCCCCCC-CCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc----------
Q psy12482        120 KQGALEIHVKQCKDLAPVDT-KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL----------  188 (419)
Q Consensus       120 ~~~~L~v~v~~a~~L~~~~~-~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l----------  188 (419)
                      ....|.+.|..++-.-.--. ..+..+..+.+++.-.+   ++++|+.+..+.+|.|+|.|-|.+..+..          
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~---QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll   83 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG---QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL   83 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecC---ceEecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence            34568888888886532211 00355667777776443   46999999999999999999999877642          


Q ss_pred             -cccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCcee--cCccccchhhhhhccccceEEEEEEeCC
Q psy12482        189 -ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCY--PLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       189 -~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~--~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                       -...|.+.|...+..+...++|+-.++...+........++  +|.......   .-..|-|.+++...|.
T Consensus        84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~---kv~~GiL~l~lELlP~  152 (156)
T PF15627_consen   84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPES---KVPVGILDLRLELLPN  152 (156)
T ss_pred             cCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCC---ccceeEEEEEEEeecC
Confidence             12468888888887777789999999888765444432233  333322221   1244888888888775

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.63  E-value=0.053  Score=44.50  Aligned_cols=121  Identities=19%  Similarity=0.285  Sum_probs=76.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEccc------CcccccEEEE
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTL------EDLECRTLWL  195 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~------~~l~~~~l~i  195 (419)
                      .+.+.|+++.+++...     ...||+.......  ....+|.... ....-.|||.|.+.+..      ..++...+.|
T Consensus         8 ~~~l~i~~l~~~p~~~-----~~v~v~wkr~~~~--~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    8 QFDLTIHELENLPSSN-----GKVFVKWKRGDKS--KGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             EEEEEEEEeECcCCCC-----CEEEEEEEECCCC--ccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            5788899999887621     2344444443211  1123333332 45568999999998433      2256778999


Q ss_pred             EEEecCCCCCCceeEEEEEeCcccccC--CCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        196 SVWHSDMFGRNDFLGEVMMSLENKVFD--DPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       196 ~v~d~~~~~~~~~iG~~~~~l~~~~~~--~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      .|+.....++...||.+.|+|+++...  .+...-++|....       .....|.+++.+.+.
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~-------~~~a~L~isi~~~~~  137 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCK-------KSNATLSISISLSEL  137 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCC-------CCCcEEEEEEEEEEC
Confidence            999875434446999999999997664  3444556665541       123678888887765

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.58  E-value=0.011  Score=48.57  Aligned_cols=74  Identities=23%  Similarity=0.277  Sum_probs=54.9

Q ss_pred             CcEEEEEEeCCCCCCC--eeecccccCC-CCceeccEEEEEcccCcc-cccEEEEEEEecCCCCCC----ceeEEEEEeC
Q psy12482        145 DPYVKVYLLPDKSKAG--KRKTRVKKHT-LSPVFDEVLKFQLTLEDL-ECRTLWLSVWHSDMFGRN----DFLGEVMMSL  216 (419)
Q Consensus       145 dpyv~v~l~~~~~~~~--~~kT~~~~~t-~nP~wne~f~f~v~~~~l-~~~~l~i~v~d~~~~~~~----~~iG~~~~~l  216 (419)
                      +.||.+.+..+++...  ...|.....+ .++.|||.+.|.+...+| .++.|.|+||........    ..||.+.++|
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l   82 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL   82 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence            4577888876665554  2366666655 799999999999887776 467899999998765544    6999999998


Q ss_pred             cc
Q psy12482        217 EN  218 (419)
Q Consensus       217 ~~  218 (419)
                      -+
T Consensus        83 Fd   84 (142)
T PF00792_consen   83 FD   84 (142)
T ss_dssp             B-
T ss_pred             EC
Confidence            76

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.21  E-value=0.015  Score=47.80  Aligned_cols=74  Identities=19%  Similarity=0.319  Sum_probs=53.3

Q ss_pred             CcEEEEEEeCCCCCcc--eeecccccCC-CCCccccEEEEcccCccccc-cCeEEEEEEECCCCCCC----ceeEEEEEe
Q psy12482        295 DAFCKAYLLPDKGRAS--KHKTGIIKRS-TSPQWNHTVVYRDVSLEELS-ERCLELTVWDHDRLTSN----EFLGGIRLN  366 (419)
Q Consensus       295 dpyV~v~~~~~~~~~~--~~~T~~~~~t-~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d~~~~~~~----~~lG~~~i~  366 (419)
                      +-||.+.+..++....  ...|....-+ .++.|||.+.|+ +...++. +..|.|+||..+.....    ..||.+.+.
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~   81 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLP   81 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence            4578888876544333  3467766666 799999999997 7777764 56699999997665544    699999999


Q ss_pred             CCC
Q psy12482        367 LGH  369 (419)
Q Consensus       367 l~~  369 (419)
                      |-+
T Consensus        82 lFd   84 (142)
T PF00792_consen   82 LFD   84 (142)
T ss_dssp             SB-
T ss_pred             eEC
Confidence            866

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=96.11  E-value=0.015  Score=54.53  Aligned_cols=87  Identities=17%  Similarity=0.235  Sum_probs=67.8

Q ss_pred             EEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccc-----cccCeEEEEEEE
Q psy12482        276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEE-----LSERCLELTVWD  350 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~-----~~~~~l~i~V~d  350 (419)
                      +.|.|.+|+|.+...  .....|..++.+     ....|..+..+..|.||..+.+. +....     .+..+|++++|.
T Consensus         2 ivl~i~egr~F~~~~--~~~~vv~a~~ng-----~~l~TDpv~~~~~p~f~teL~WE-~Dr~~l~~~r~~~tPiKl~c~a   73 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP--RHPIVVEAKFNG-----ESLETDPVPHTESPQFNTELAWE-CDRKALKQHRLQRTPIKLQCFA   73 (340)
T ss_pred             EEEEEecccCCCCCC--CccEEEEEEeCC-----ceeeecCCCCCCCceeecceeee-ccHHHHHHhhccCCceEEEEEE
Confidence            678999999998753  235577777743     34788888889999999999885 54433     346779999999


Q ss_pred             CC-CCCCCceeEEEEEeCCCC
Q psy12482        351 HD-RLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       351 ~~-~~~~~~~lG~~~i~l~~~  370 (419)
                      -+ ..+..+.+|.+.|+|+.+
T Consensus        74 ~~~~~~~re~iGyv~LdLRsa   94 (340)
T PF12416_consen   74 VDGSTGKRESIGYVVLDLRSA   94 (340)
T ss_pred             ecCCCCcceeccEEEEEcccc
Confidence            77 567789999999999884

>KOG3837|consensus

Probab=95.99  E-value=0.0034  Score=58.61  Aligned_cols=97  Identities=15%  Similarity=0.203  Sum_probs=74.7

Q ss_pred             cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCc-----cc----cccC
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSL-----EE----LSER  342 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~-----~~----~~~~  342 (419)
                      ...|.+.|.++++++..... ..|-||++++.-......+.+|.+++.|.+|.|+|.|... +..     .+    ....
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeee-ccCCCcccHHHHHHHHhc
Confidence            45688888899988776644 6789999997644345567899999999999999999985 544     11    1244


Q ss_pred             eEEEEEEECCC-CCCCceeEEEEEeCCCC
Q psy12482        343 CLELTVWDHDR-LTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       343 ~l~i~V~d~~~-~~~~~~lG~~~i~l~~~  370 (419)
                      .++|++++... +.+|.++|.+.|.|..+
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~L  473 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEIL  473 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehhh
Confidence            59999999764 56789999999988653

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=95.95  E-value=0.039  Score=42.23  Aligned_cols=76  Identities=17%  Similarity=0.194  Sum_probs=53.1

Q ss_pred             EEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcc-eeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEECC
Q psy12482        276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRAS-KHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWDHD  352 (419)
Q Consensus       276 l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~-~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d~~  352 (419)
                      +.+.+..++++...... .++-||++.+..++.... ...|..+.-...+.|||-+.|+ +...++. +..|.|+||+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEee
Confidence            66677777777654444 468999999876543222 3345555545568999999997 7777765 566999999854

Outlier of C2 family.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=95.84  E-value=0.088  Score=45.30  Aligned_cols=60  Identities=15%  Similarity=0.193  Sum_probs=39.1

Q ss_pred             cceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCC---CceeEEEEEeCCC
Q psy12482        309 ASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTS---NEFLGGIRLNLGH  369 (419)
Q Consensus       309 ~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~---~~~lG~~~i~l~~  369 (419)
                      .....|.+...+.+|.|+|+|.+. +|.......-|.|++++...-.+   ...+|.+.++|-+
T Consensus        58 ~~~~~S~v~yh~k~P~f~deiKi~-LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   58 VTSYYSSVYYHNKNPQFNDEIKIQ-LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             BS-EE----TT-SS-EEEEEEEEE-E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             ceEEEEEEEecCCCCCccEEEEEE-cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            345678888889999999999996 98887778889999999544322   2699999999965

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=95.80  E-value=0.055  Score=41.40  Aligned_cols=77  Identities=21%  Similarity=0.248  Sum_probs=54.3

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEEecC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVWHSD  201 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~d~~  201 (419)
                      +.+.+..+.+....... ..++-||.+.+..+++... ...|..+.-...+.|||...|++...++ .++.|.|++|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~-~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSR-DYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCccccc-CcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            56677777777655432 2358899998876554432 3356555556669999999999887776 4678999999864

Outlier of C2 family.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=95.79  E-value=0.15  Score=43.79  Aligned_cols=59  Identities=19%  Similarity=0.301  Sum_probs=38.7

Q ss_pred             CeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCC-C--CceeEEEEEeCcc
Q psy12482        160 GKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFG-R--NDFLGEVMMSLEN  218 (419)
Q Consensus       160 ~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~-~--~~~iG~~~~~l~~  218 (419)
                      ....|.+..++.+|.|+|+|...++.....+.-|.|++++...-. +  ...+|.+.++|-+
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            456788888899999999999999988888889999999975422 1  2689999999876

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=94.98  E-value=0.091  Score=44.86  Aligned_cols=59  Identities=15%  Similarity=0.312  Sum_probs=47.7

Q ss_pred             cceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCC--CceeEEEEEeCC
Q psy12482        309 ASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTS--NEFLGGIRLNLG  368 (419)
Q Consensus       309 ~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~--~~~lG~~~i~l~  368 (419)
                      ...++|.+.+.+.+|.|||++.+. +|.+.....-|.|++++.....+  ...+|.+-++|-
T Consensus        52 ~se~~S~V~yH~~~P~W~EtiKi~-lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          52 CSEYRSFVLYHNNSPRWNETIKLP-IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             cceEEEEEEEcCCCCCCceeEEEe-cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            445788999999999999999996 99999999999999988443221  267999988883

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=94.93  E-value=0.079  Score=45.23  Aligned_cols=60  Identities=17%  Similarity=0.318  Sum_probs=47.2

Q ss_pred             CCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCC--CCceeEEEEEeCcc
Q psy12482        159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFG--RNDFLGEVMMSLEN  218 (419)
Q Consensus       159 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~--~~~~iG~~~~~l~~  218 (419)
                      ...++|.+.....+|.|+|++...|+.+.....-|.|++++.....  ....+|-+-++|-+
T Consensus        52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            4457889999999999999999999999998899999998864321  12567777777643

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=94.89  E-value=0.19  Score=41.44  Aligned_cols=95  Identities=12%  Similarity=0.203  Sum_probs=63.6

Q ss_pred             CCcceEEEEEeccccccccCC---CCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccc-------
Q psy12482        271 AAKGSLHVLIKEAKSLCPVKS---NTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-------  340 (419)
Q Consensus       271 ~~~~~l~v~v~~a~~L~~~~~---~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-------  340 (419)
                      +....|.+.|..++..-..-.   ...+.-+.+.+.-   +..+++|+.+..+.+|.|+|.|-|+ +..+...       
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f---~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~   81 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF---RGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATT   81 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe---cCceEecCCcccccCCCCCCcEEEE-ecccccccccchhH
Confidence            446789999999987543222   2344455555532   3456999999999999999999996 6554311       


Q ss_pred             ----cCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482        341 ----ERCLELTVWDHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       341 ----~~~l~i~V~d~~~~~~~~~lG~~~i~l~~  369 (419)
                          ...|.+.|.--|..+...++|.-.++.+.
T Consensus        82 lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~  114 (156)
T PF15627_consen   82 LLSISDPIHIVLIRTDPSGETTLVGSHFLDWRK  114 (156)
T ss_pred             hhcCCCceEEEEEEecCCCceEeeeeceehHHH
Confidence                23477778777766656777776665443

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=94.23  E-value=0.34  Score=41.49  Aligned_cols=59  Identities=15%  Similarity=0.219  Sum_probs=46.6

Q ss_pred             CCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC-CCC---ceeEEEEEeCc
Q psy12482        159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF-GRN---DFLGEVMMSLE  217 (419)
Q Consensus       159 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~-~~~---~~iG~~~~~l~  217 (419)
                      ....+|.+.....+|.|+|++...|+.+.....-|.|++++.... .+|   ..+|-+-++|-
T Consensus        52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            446788888899999999999999999999899999999886422 122   46777777764

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=94.13  E-value=0.22  Score=42.71  Aligned_cols=60  Identities=15%  Similarity=0.186  Sum_probs=48.0

Q ss_pred             CcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC-CC---CceeEEEEEeCC
Q psy12482        308 RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL-TS---NEFLGGIRLNLG  368 (419)
Q Consensus       308 ~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~-~~---~~~lG~~~i~l~  368 (419)
                      .....+|.+.+.+.+|.|||++... +|.+.....-|.|++++.... .+   ...+|.+-++|-
T Consensus        51 ~~se~~S~V~Yh~~~P~W~EtIKl~-lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          51 PIDEYKSVIYYQVDKPKWFETFKVA-IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             cceeEEEEEEeecCCCCCceeEEEe-cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            4556788898999999999999996 999999999999999885432 11   256898888884

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=94.05  E-value=1.1  Score=36.63  Aligned_cols=92  Identities=18%  Similarity=0.260  Sum_probs=57.6

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeeccccc-CCCCCccccEEEEcccCcc------ccccCeEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIK-RSTSPQWNHTVVYRDVSLE------ELSERCLE  345 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~-~t~nP~wne~f~f~~v~~~------~~~~~~l~  345 (419)
                      ...+.+.|+++.+++.     .+..|.|.............|.... ....-.|||.|.++ +.+.      .+....+.
T Consensus         6 kf~~~l~i~~l~~~p~-----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~   79 (143)
T PF10358_consen    6 KFQFDLTIHELENLPS-----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFP-CTLYRDKKSKEFQPKELK   79 (143)
T ss_pred             eEEEEEEEEEeECcCC-----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEE-EEEEEcCCCCcEeeEEEE
Confidence            4678899999999986     2334444432221111122333322 23456999999996 4332      25667799


Q ss_pred             EEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        346 LTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       346 i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      |.|+....-++...||.+.|+|+++
T Consensus        80 ~~v~~~~~~~~k~~lG~~~inLaey  104 (143)
T PF10358_consen   80 FSVFEVDGSGKKKVLGKVSINLAEY  104 (143)
T ss_pred             EEEEEecCCCccceEEEEEEEHHHh
Confidence            9999875434446999999999873

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>KOG1452|consensus

Probab=92.31  E-value=0.68  Score=42.13  Aligned_cols=85  Identities=15%  Similarity=0.089  Sum_probs=56.8

Q ss_pred             EEccCCEEEEEEEeecCCCCCCCCC-CCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEE
Q psy12482        117 YNYKQGALEIHVKQCKDLAPVDTKR-QRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWL  195 (419)
Q Consensus       117 y~~~~~~L~v~v~~a~~L~~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i  195 (419)
                      ....+|.|.+++..+|+|.-....+ -..+-|+.+....    ..+.+|.+.....--.|.|+|..++-.    ...+.+
T Consensus        46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr----qh~aRt~vrs~~~~f~w~e~F~~Dvv~----~~vl~~  117 (442)
T KOG1452|consen   46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR----QHPARTRVRSSGPGFAWAEDFKHDVVN----IEVLHY  117 (442)
T ss_pred             eecccceEEEEEecccccccChhccCceeeeeeeeeecc----cCccccccccCCCCccchhhceeeccc----ceeeeE
Confidence            3355799999999999997543322 3567888877741    224556655555555778988887543    337788


Q ss_pred             EEEecCCCCCCcee
Q psy12482        196 SVWHSDMFGRNDFL  209 (419)
Q Consensus       196 ~v~d~~~~~~~~~i  209 (419)
                      -||.++.-.++++.
T Consensus       118 lvySW~pq~RHKLC  131 (442)
T KOG1452|consen  118 LVYSWPPQRRHKLC  131 (442)
T ss_pred             EEeecCchhhcccc
Confidence            88988765566643

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=92.06  E-value=1.6  Score=32.26  Aligned_cols=84  Identities=18%  Similarity=0.217  Sum_probs=54.4

Q ss_pred             CCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCC
Q psy12482        144 SDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD  223 (419)
Q Consensus       144 ~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~  223 (419)
                      .+..+.+.+..    ....+|.-+. ..+..|++.|.+++..    ...|+|.||-.|.   ..+.|-..+.|++.    
T Consensus         9 ~eV~avLklDn----~~VgqT~Wk~-~s~q~WDQ~Fti~LdR----sRELEI~VywrD~---RslCav~~lrLEd~----   72 (98)
T cd08687           9 SEVSAVLKLDN----TVVGQTQWKP-KSNQAWDQSFTLELER----SRELEIAVYWRDW---RSLCAVKFLKLEDE----   72 (98)
T ss_pred             cceEEEEEEcC----eEEeeccccc-cccccccceeEEEeec----ccEEEEEEEEecc---hhhhhheeeEhhhh----
Confidence            45666666642    1234454432 3578999999998755    5589999998774   45778888888872    


Q ss_pred             CCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        224 PSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       224 ~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      ....-++|.+           .|.+...+.|
T Consensus        73 ~~~~~~~lep-----------qg~l~~ev~f   92 (98)
T cd08687          73 RHEVQLDMEP-----------QLCLVAELTF   92 (98)
T ss_pred             cccceecccc-----------ccEEEEEEEe
Confidence            1123344443           3777777777

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.25  E-value=3.4  Score=35.30  Aligned_cols=59  Identities=19%  Similarity=0.216  Sum_probs=44.8

Q ss_pred             CCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC--C-------CCceeEEEEEeCc
Q psy12482        159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF--G-------RNDFLGEVMMSLE  217 (419)
Q Consensus       159 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~--~-------~~~~iG~~~~~l~  217 (419)
                      .....|.+..++.+|.|.|++...++.......-|.|++|+.+-.  .       ....+|-+.++|-
T Consensus        55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl  122 (185)
T cd08697          55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL  122 (185)
T ss_pred             ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence            345788888889999999999999988877788999999987521  1       1245676666664

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=89.59  E-value=2.8  Score=35.80  Aligned_cols=56  Identities=21%  Similarity=0.319  Sum_probs=42.4

Q ss_pred             eecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC-----CCCceeEEEEEeCcc
Q psy12482        162 RKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF-----GRNDFLGEVMMSLEN  218 (419)
Q Consensus       162 ~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~-----~~~~~iG~~~~~l~~  218 (419)
                      ++|.+..+ .+|.|+|+|...++.+.....-|.|++++...-     .....+|-+.++|-+
T Consensus        55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            44444445 899999999999977766778999999987532     235688888888765

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=89.19  E-value=4.7  Score=34.29  Aligned_cols=60  Identities=20%  Similarity=0.263  Sum_probs=45.3

Q ss_pred             CCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCC------CceeEEEEEeCcc
Q psy12482        159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGR------NDFLGEVMMSLEN  218 (419)
Q Consensus       159 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~------~~~iG~~~~~l~~  218 (419)
                      .....|.+..++.+|.|+|++...++.......-|.|++++.+--.+      ...+|-+.++|-+
T Consensus        53 ~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          53 LTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             ceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            44678888889999999999999998877777899999998643211      2457777776643

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=88.50  E-value=1.7  Score=37.15  Aligned_cols=55  Identities=15%  Similarity=0.192  Sum_probs=42.2

Q ss_pred             cccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC-----CCCceeEEEEEeCCC
Q psy12482        314 TGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL-----TSNEFLGGIRLNLGH  369 (419)
Q Consensus       314 T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~-----~~~~~lG~~~i~l~~  369 (419)
                      |.++....+|.|+|+|... +|.......-|.|++++-..-     .....+|.+.++|-+
T Consensus        56 ~sv~~~~k~p~f~deiKi~-LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          56 TSVVYYHKNPVFNDEIKIQ-LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEcCCCCCCceeEEEe-cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            3344444899999999996 887766778899999995532     336789999999865

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=88.24  E-value=3.1  Score=35.56  Aligned_cols=60  Identities=10%  Similarity=0.140  Sum_probs=47.4

Q ss_pred             cceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC--C-------CCceeEEEEEeCCC
Q psy12482        309 ASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL--T-------SNEFLGGIRLNLGH  369 (419)
Q Consensus       309 ~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~--~-------~~~~lG~~~i~l~~  369 (419)
                      .....|.+...+.+|.|+|.+-.. +|.......-|.|+.++-..-  .       ....+|.+.++|-.
T Consensus        55 ~~~~~s~V~yh~k~P~f~dEiKI~-LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          55 TTSAYAAVLHHNQNPEFYDEIKIE-LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             ceEEEEEEEEcCCCCccceeEEEe-cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            445788899999999999999996 888877788899999995421  1       13569999998854

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=87.98  E-value=1.5  Score=37.25  Aligned_cols=60  Identities=13%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             cceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCC------CceeEEEEEeCCC
Q psy12482        309 ASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTS------NEFLGGIRLNLGH  369 (419)
Q Consensus       309 ~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~------~~~lG~~~i~l~~  369 (419)
                      .....|.+...+.+|.|+|.+-.. +|.......-|.|+.++-..-.+      ...+|.+.++|-.
T Consensus        53 ~~~~~S~V~yHnk~P~f~DEiKi~-LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          53 LTEAYTAVTYHNKSPDFYDEIKIK-LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             ceeEEEEEEEeCCCCcccceEEEE-cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            445788889999999999999996 88877777889999999443221      3569999998743

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=87.24  E-value=2.3  Score=32.82  Aligned_cols=66  Identities=20%  Similarity=0.376  Sum_probs=34.8

Q ss_pred             EEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccc-----cccCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482        297 FCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEE-----LSERCLELTVWDHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       297 yV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~-----~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~  369 (419)
                      ||.+.+.    .-+.+.|+++. ..+|.+|-+..|. |..++     ++...+.|+++..-. ...+.||.+.|++..
T Consensus         2 Fct~dFy----dfEtq~Tpvv~-G~~p~y~fts~y~-V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~   72 (107)
T PF11618_consen    2 FCTYDFY----DFETQTTPVVR-GLNPFYDFTSQYK-VTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRP   72 (107)
T ss_dssp             EEEE-ST----T---EE---EE-SSS----EEEEEE-E--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SH
T ss_pred             EEEEEee----ceeeeccccee-CCCccceeEEEEE-EEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechh
Confidence            4555552    23447788877 6899999999995 66654     457789999998653 336899999999954

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>KOG1452|consensus

Probab=84.68  E-value=2.3  Score=38.80  Aligned_cols=74  Identities=16%  Similarity=0.155  Sum_probs=50.9

Q ss_pred             cceEEEEEeccccccccCC--C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKS--N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVW  349 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~--~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~  349 (419)
                      .|.|.++++.+|+|.-...  + +.+-|+.+.+    ....+.+|.+......=.|.|.|... +.-    ...+.+-||
T Consensus        50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~----drqh~aRt~vrs~~~~f~w~e~F~~D-vv~----~~vl~~lvy  120 (442)
T KOG1452|consen   50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP----DRQHPARTRVRSSGPGFAWAEDFKHD-VVN----IEVLHYLVY  120 (442)
T ss_pred             cceEEEEEecccccccChhccCceeeeeeeeee----cccCccccccccCCCCccchhhceee-ccc----ceeeeEEEe
Confidence            7999999999999976554  5 7899999988    34444555555443344778888764 221    234778888


Q ss_pred             ECCCCC
Q psy12482        350 DHDRLT  355 (419)
Q Consensus       350 d~~~~~  355 (419)
                      .|+.-.
T Consensus       121 SW~pq~  126 (442)
T KOG1452|consen  121 SWPPQR  126 (442)
T ss_pred             ecCchh
Confidence            887543

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=81.43  E-value=3.1  Score=32.11  Aligned_cols=60  Identities=22%  Similarity=0.302  Sum_probs=34.3

Q ss_pred             eeecccccCCCCceeccEEEEEcccCcc-----cccEEEEEEEecCCCCCCceeEEEEEeCcccccC
Q psy12482        161 KRKTRVKKHTLSPVFDEVLKFQLTLEDL-----ECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD  222 (419)
Q Consensus       161 ~~kT~~~~~t~nP~wne~f~f~v~~~~l-----~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~  222 (419)
                      .+.|.++. +.+|.||-+-.|.|..+++     +...+.|+++..-. ...+.||.+.+++..+...
T Consensus        12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~   76 (107)
T PF11618_consen   12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLES   76 (107)
T ss_dssp             -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH-
T ss_pred             eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcC
Confidence            45677765 7899999999999887764     67799999998763 2478999999999987533

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	419
3fdw_A	148	Crystal Structure Of A C2 Domain From Human Synapto		6e-30
3fdw_A	148	Crystal Structure Of A C2 Domain From Human Synapto		1e-05
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		2e-22
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		2e-22
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		4e-20
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		1e-13
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		8e-19
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		2e-16
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		1e-07
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		2e-16
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		1e-07
2dmg_A	142	Solution Structure Of The Third C2 Domain Of Kiaa12		7e-16
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		1e-15
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		2e-08
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		2e-15
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		1e-08
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		1e-14
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		3e-08
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		2e-14
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		2e-14
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		3e-14
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		3e-14
1ugk_A	138	Solution Structure Of The First C2 Domain Of Synapt		1e-13
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		3e-13
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		2e-05
2b3r_A	134	Crystal Structure Of The C2 Domain Of Class Ii Phos		1e-12
2b3r_A	134	Crystal Structure Of The C2 Domain Of Class Ii Phos		5e-06
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		9e-12
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		3e-08
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		5e-11
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		2e-07
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		6e-11
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		1e-07
2enp_A	147	Solution Structure Of The First C2 Domain From Huma		6e-11
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		5e-10
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		1e-09
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		6e-10
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		2e-09
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		8e-10
2bwq_A	129	Crystal Structure Of The Rim2 C2a-Domain At 1.4 Ang		5e-07
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		2e-09
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		9e-09
1v27_A	141	Solution Structure Of The First C2 Domain Of Rim2 L		2e-09
1v27_A	141	Solution Structure Of The First C2 Domain Of Rim2 L		7e-07
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		7e-09
1w15_A	153	Rat Synaptotagmin 4 C2b Domain In The Presence Of C		7e-08
2q3x_A	171	The Rim1alpha C2b Domain Length = 171		1e-07
1tjm_A	159	Crystallographic Identification Of Sr2+ Coordinatio		3e-07
2lha_A	151	Solution Structure Of C2b With Ip6 Length = 151		5e-07
1k5w_A	152	Three-Dimensional Structure Of The Synaptotagmin 1		6e-07

>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148

Iteration: 1
 Score =  128 bits (321), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 84/130 (64%)
Query: 103 GSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKR 162
           G++ V G + F L+Y  +  +L +HVK+C  LA  D  ++RS+PYVK YLLPDKS+ GKR
Sbjct: 4   GNIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKR 63
Query: 163 KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD 222
           KT +K+ T++P++DE L++++    L  RTL  SVWH   FGRN FLGE  + +++   D
Sbjct: 64  KTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLD 123
Query: 223 DPSPKCYPLQ 232
                C PL 
Sbjct: 124 KKLDHCLPLH 133

>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
           + + K YLLPDK R  K KT I + + +P ++ T+ Y ++            +VW H R 
Sbjct: 46  NPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRY-EIPESLLAQRTLQFSVWHHGRF 104
Query: 355 TSNEFLGGIRLNL 367
             N FLG   + +
Sbjct: 105 GRNTFLGEAEIQM 117

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 36/296 (12%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G + F L+Y Y    L + + Q  DL P       SDPYVK+YLLPD+ K  K +T+V +
Sbjct: 8   GRISFALRYLYGSDQLVVRILQALDL-PAKDSNGFSDPYVKIYLLPDRKK--KFQTKVHR 64
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
            TL+P+F+E  +F + L +L  R L  SV+  D F R+D +G+V++    ++ + P  + 
Sbjct: 65  KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRP 124
Query: 229 Y---PLQERSEILDELICSKGELIIGLKFVPPEDXXXXXXXXXXXXXXXXXHVLIKEAKS 285
                L+  SE  D      GEL   L ++P                     V I +A +
Sbjct: 125 LWRDILEGGSEKAD-----LGELNFSLCYLP---------------TAGLLTVTIIKASN 164
Query: 286 LCPVK-SNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXX 344
           L  +  +   D + KA L+ +  R  K KT I K + +P +N  +V+ DV          
Sbjct: 165 LKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAPESVENVGL 223
Query: 345 XXTVWDHDRLTSNEFLGGIRLNL----GHGK-HYSKLVDWMDSSGKEILLWQQMME 395
              V D+D +  NE +G  R+       HG+ H++++   + +  K +  W Q++E
Sbjct: 224 SIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEM---LANPRKPVEHWHQLVE 276

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 140/296 (47%), Gaps = 36/296 (12%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G + F L+Y Y    L + + Q  DL P       SDPYVK+YLLPD+ K  K +T+V +
Sbjct: 7   GRISFALRYLYGSDQLVVRILQALDL-PAKDSNGFSDPYVKIYLLPDRKK--KFQTKVHR 63
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
            TL+P+F+E  +F + L +L  R L  SV+  D F R+D +G+V++    ++ + P  + 
Sbjct: 64  KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRP 123
Query: 229 Y---PLQERSEILDELICSKGELIIGLKFVPPEDXXXXXXXXXXXXXXXXXHVLIKEAKS 285
                L+  SE  D      GEL   L ++P                     V I +A +
Sbjct: 124 LWRDILEGGSEKAD-----LGELNFSLCYLP---------------TAGLLTVTIIKASN 163
Query: 286 LCPVK-SNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXX 344
           L  +  +   D + KA L+ +  R  K KT I K + +P +N  +V+ DV          
Sbjct: 164 LKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAPESVENVGL 222
Query: 345 XXTVWDHDRLTSNEFLGGIRLNL----GHGK-HYSKLVDWMDSSGKEILLWQQMME 395
              V D+D +  NE +G  R+       HG+ H++++   + +  K +  W Q++E
Sbjct: 223 SIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEM---LANPRKPVEHWHQLVE 275

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 86/140 (61%), Gaps = 13/140 (9%)
Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP---------DKS 157
           + GE++  LQ NY  G L IH+ Q ++L P D     SDP+VKVYLLP         + S
Sbjct: 5   ITGEIQ--LQINYDLGNLIIHILQARNLVPRDNN-GYSDPFVKVYLLPGRGQVMVVQNAS 61
Query: 158 KAGKRKTRVKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
              KR+T+  + +L+P +++ + ++ +++E L  +TL ++VW  D F  NDFLGEV++ L
Sbjct: 62  AEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
Query: 217 ENKVFDDPSPKCYPLQERSE 236
            +    D +P+ YPL+E++E
Sbjct: 122 SSTSHLDNTPRWYPLKEQTE 141

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 280 IKEAKSLCPVKSNTV-DAFCKAYLLPDKGRAS---------KHKTGIIKRSTSPQWNHTV 329
           I +A++L P  +N   D F K YLLP +G+           K +T  +++S +P+WN TV
Sbjct: 24  ILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV 83
Query: 330 VYRDVXXXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDW 379
           +Y+ +            TVWD+DR +SN+FLG + ++L    H      W
Sbjct: 84  IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRW 133

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 142/290 (48%), Gaps = 36/290 (12%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G++++ L Y+++   L + + Q  +L  +D     SDPYVKV+LLPDK K  K +T+V +
Sbjct: 6   GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHR 62
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
            TL+PVF+E   F++   +L  +TL ++V+  D F ++D +GE  + +    F   + + 
Sbjct: 63  KTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEW 122
Query: 229 YPLQERSEILDELICSKGELIIGLKFVPPEDXXXXXXXXXXXXXXXXXHVLIKEAKSLCP 288
             LQ   +   E +   G++   L++VP                     V+I EAK+L  
Sbjct: 123 RDLQSAEKEEQEKL---GDICFSLRYVPTAGKLT---------------VVILEAKNLKK 164
Query: 289 VKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXT 347
           +    + D + K +L+ +  R  K KT I K + +P +N +  + +V            T
Sbjct: 165 MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF-EVPFEQIQKVQVVVT 223
Query: 348 VWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERP 397
           V D+D++  N+ +G  ++ +G+           +S+G E+  W  M+  P
Sbjct: 224 VLDYDKIGKNDAIG--KVFVGY-----------NSTGAELRHWSDMLANP 260

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G +EF L Y+     L+  + + K L P+D+    +DPYVK++LLP  SK+ K +T+  +
Sbjct: 16  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSN-GLADPYVKLHLLPGASKSNKLRTKTLR 74
Query: 169 HTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE 217
           +T +PV++E L++  +T ED++ +TL +SV   D FG N+F+GE   SL+
Sbjct: 75  NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLK 124

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 280 IKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXX 338
           I  AK L P+ SN + D + K +LLP   +++K +T  ++ + +P WN T+ Y  +    
Sbjct: 35  IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94
Query: 339 XXXXXXXXTVWDHDRLTSNEFLGGIRLNL 367
                   +V D D+   NEF+G  R +L
Sbjct: 95  MQRKTLRISVCDEDKFGHNEFIGETRFSL 123

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 71/110 (64%), Gaps = 2/110 (1%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G +EF L Y+     L+  + + K L P+D+    +DPYVK++LLP  SK+ K +T+  +
Sbjct: 14  GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSN-GLADPYVKLHLLPGASKSNKLRTKTLR 72
Query: 169 HTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE 217
           +T +PV++E L++  +T ED++ +TL +SV   D FG N+F+GE   SL+
Sbjct: 73  NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLK 122

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 280 IKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXX 338
           I  AK L P+ SN + D + K +LLP   +++K +T  ++ + +P WN T+ Y  +    
Sbjct: 33  IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 92
Query: 339 XXXXXXXXTVWDHDRLTSNEFLGGIRLNL 367
                   +V D D+   NEF+G  R +L
Sbjct: 93  MQRKTLRISVCDEDKFGHNEFIGETRFSL 121

>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228 Protein Length = 142

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G+++  ++++ ++  L + V  C++L  +      SDPYV++YLLPDK ++G+RKT V K
Sbjct: 11  GQIQLTIRHSSQRNKLIVVVHACRNL--IAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSK 68
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND--FLGEVMMSLENKVFDDPSP 226
            TL+PVFD+   F ++L +++ RTL ++V +S  F   D   LG+V+++L ++       
Sbjct: 69  KTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWT 128
Query: 227 KCYPLQERS 235
           + Y L E S
Sbjct: 129 QWYDLTEDS 137

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Query: 101 RYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG 160
           R G +  +G++   L Y+ +QG L + + +C  LA +D     SDP+VK++L PD  K  
Sbjct: 16  RIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDA-NGYSDPFVKLWLKPDMGKKA 74
Query: 161 KRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK 219
           K KT++KK TL+P F+E   + +   DL  ++L +SVW  D+   ND++G   + +  K
Sbjct: 75  KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
           D F K +L PD G+ +KHKT I K++ +P++N    Y D+            +VWD+D  
Sbjct: 59  DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIG 117
Query: 355 TSNEFLGGIRLNL-GHGKHYSKLVDWMDSSGKEILLWQQM 393
            SN+++GG +L +   G+      + + +  K+I  W Q+
Sbjct: 118 KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 157

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 101 RYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG 160
           R G +  +G++   L Y+ +QG L + + +C  LA  D     SDP+VK++L PD  K  
Sbjct: 16  RIGDIEERGKILVSLXYSTQQGGLIVGIIRCVHLAAXDA-NGYSDPFVKLWLKPDXGKKA 74
Query: 161 KRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK 219
           K KT++KK TL+P F+E   + +   DL  ++L +SVW  D+   ND++G   + +  K
Sbjct: 75  KHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
           D F K +L PD G+ +KHKT I K++ +P++N    Y D+            +VWD+D  
Sbjct: 59  DPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIG 117
Query: 355 TSNEFLGGIRLNL-GHGKHYSKLVDWMDSSGKEILLWQQMM 394
            SN+++GG +L +   G+      + + +  K+I  W Q+ 
Sbjct: 118 KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ 158

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
           +G++   L Y+ +QG L + + +C  LA +D     SDP+VK++L PD  K  K KT++K
Sbjct: 1   RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDA-NGYSDPFVKLWLKPDMGKKAKHKTQIK 59
Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK 219
           K TL+P F+E   + +   DL  ++L +SVW  D+   ND++G   + +  K
Sbjct: 60  KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 111

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
           D F K +L PD G+ +KHKT I K++ +P++N    Y D+            +VWD+D  
Sbjct: 37  DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIG 95
Query: 355 TSNEFLGGIRLNL-GHGKHYSKLVDWMDSSGKEILLWQQM 393
            SN+++GG +L +   G+      + + +  K+I  W Q+
Sbjct: 96  KSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 135

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G++++ L Y+++   L + + Q  +L  +D     SDPYVKV+LLPDK K  K +T+V +
Sbjct: 21  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHR 77
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF 221
            TL+PVF+E   F++   +L  +TL ++V+  D F ++D +GE  + +    F
Sbjct: 78  KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 130

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G++++ L Y+++   L + + Q  +L  +D     SDPYVKV+LLPDK K  K +T+V +
Sbjct: 21  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHR 77
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF 221
            TL+PVF+E   F++   +L  +TL ++V+  D F ++D +GE  + +    F
Sbjct: 78  KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 130

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 66/103 (64%), Gaps = 3/103 (2%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G++++ L Y+++   L + + Q  +L  +D     SDPYVKV+LLPDK K  K +T+V +
Sbjct: 29  GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHR 85
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGE 211
            TL+PVF+E   F++   +L  +TL ++V+  D F ++D +GE
Sbjct: 86  KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE 128

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 68/108 (62%), Gaps = 3/108 (2%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G++++ L Y+++   L + + Q  +L  +D     SDPYVKV+LLPDK K  K +T+V +
Sbjct: 4   GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHR 60
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
            TL+PVF+E   F++   +L  +TL ++V+  D F ++D +GE  + +
Sbjct: 61  KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPM 108

>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/105 (35%), Positives = 62/105 (59%), Gaps = 3/105 (2%)
Query: 113 FGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLS 172
           F L+YN+++ A  +++K+ + L  +D +   SDPY+K+ +LP+K    K KTRV + TL 
Sbjct: 13  FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKTRVLRKTLD 70
Query: 173 PVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
           P FDE   F  +    ++   L  ++   D F R+D +GEV++ L
Sbjct: 71  PAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G ++F + YN+++  L + + + ++L P       SDP+VK+YLLPDK    K +T+VK+
Sbjct: 13  GRIQFSVGYNFQESTLTVKIMKAQEL-PAKDFSGTSDPFVKIYLLPDKKH--KLETKVKR 69
Query: 169 HTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKV 220
             L+P ++E   F+    E +  R L+L V   D F RND +GEV + L NKV
Sbjct: 70  KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL-NKV 121

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 278 VLIKEAKSLCPVK--SNTVDAFCKAYLLPDKGRASKHK--TGIIKRSTSPQWNHTVVYRD 333
           V I +A+ L P K  S T D F K YLLPDK    KHK  T + +++ +P WN T ++  
Sbjct: 30  VKIMKAQEL-PAKDFSGTSDPFVKIYLLPDK----KHKLETKVKRKNLNPHWNETFLFEG 84
Query: 334 VXXXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLG 368
                         V D+DR + N+ +G + + L 
Sbjct: 85  FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLN 119

>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV 174
           L  +Y+ G L I V   KDL   D      +PYVK YLLPD  K  KRKT++ + T +P 
Sbjct: 13  LSVSYRNGTLFIMVMHIKDLVTEDG--ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPT 70
Query: 175 FDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPL 231
           F+E+L +   + E L  R L LSV  ++    N FLG + + L++      + K Y L
Sbjct: 71  FNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQL 128

>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 46/111 (41%)
Query: 278 VLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXX 337
           +++   K L        + + K YLLPD  + SK KT I +++ +P +N  +VY      
Sbjct: 24  IMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83
Query: 338 XXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEIL 388
                    +V   + L  N FLGGI L L       + V W   +    L
Sbjct: 84  TLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL 134

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 123 ALEIHVK--QCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
           A EIHV   + ++L P+D     SDPYVK+ L+PD     K+KTR  K TL+PV++E   
Sbjct: 19  ADEIHVTVGEARNLIPMDPN-GLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFV 77
Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLG 210
           F L   D+E R L + VW  D   RNDF+G
Sbjct: 78  FNLKPGDVE-RRLSVEVWDWDRTSRNDFMG 106

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 277 HVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVX 335
           HV + EA++L P+  N + D + K  L+PD    +K KT  +K + +P WN T V+    
Sbjct: 23  HVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFN--L 80
Query: 336 XXXXXXXXXXXTVWDHDRLTSNEFLGGI 363
                       VWD DR + N+F+G +
Sbjct: 81  KPGDVERRLSVEVWDWDRTSRNDFMGAM 108

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV 174
           +Q +  +  L + V+  K+L P+D     SDPYVK+ L+PD     K+KT+  K +L+P 
Sbjct: 165 IQAHIDREVLIVVVRDAKNLVPMDPN-GLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPE 223
Query: 175 FDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
           ++E  +FQL   D + R L + +W  D+  RNDF+G +   +
Sbjct: 224 WNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGI 264

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 278 VLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXX 336
           V++++AK+L P+  N + D + K  L+PD    SK KT  IK S +P+WN T  +R    
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNET--FRFQLK 233
Query: 337 XXXXXXXXXXTVWDHDRLTSNEFLGGIRLNL 367
                      +WD D  + N+F+G +   +
Sbjct: 234 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI 264

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV 174
           +Q +  +  L + V+  K+L P+D     SDPYVK+ L+PD     K+KT+  K +L+P 
Sbjct: 24  IQAHIDREVLIVVVRDAKNLVPMDPN-GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPE 82
Query: 175 FDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
           ++E  +FQL   D + R L + +W  D+  RNDF+G +   +
Sbjct: 83  WNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGI 123

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 278 VLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXX 336
           V++++AK+L P+  N + D + K  L+PD    SK KT  IK S +P+WN T  +R    
Sbjct: 35  VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET--FRFQLK 92
Query: 337 XXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGH 369
                      +WD D  + N+F+G +   +  
Sbjct: 93  ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 125

>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPV---DTKRQ---RSDPYVKVYLLPDKSKAGKR 162
           G + F  QY+     L + V + +DL P    D  RQ    S+PYVK+ LLPD+  +  +
Sbjct: 13  GMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNS--K 70
Query: 163 KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
           +T VK+ T  PVF+E   F++   + + RTL L+V   D F R+  +G+V + L
Sbjct: 71  QTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 103 GSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKR 162
           G + +K EV            L + V+  K+L P+D     SDPYVK+ L+PD     K+
Sbjct: 5   GRIYLKAEV--------TDEKLHVTVRDAKNLIPMDPN-GLSDPYVKLKLIPDPKNESKQ 55
Query: 163 KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEV 212
           KT+  + TL+P ++E   F+L   D + R L + +W  D   RNDF+G +
Sbjct: 56  KTKTIRSTLNPQWNESFTFKLKPSDKD-RRLSVEIWDWDRTTRNDFMGSL 104

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 277 HVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVX 335
           HV +++AK+L P+  N + D + K  L+PD    SK KT  I+ + +PQWN +  ++   
Sbjct: 19  HVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK--L 76
Query: 336 XXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNLGH 369
                       +WD DR T N+F+G +   +  
Sbjct: 77  KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSE 110

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 103 GSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKR 162
           G + +K EV            L + V+  K+L P+D     SDPYVK+ L+PD     K+
Sbjct: 6   GRIYLKAEV--------TDEKLHVTVRDAKNLIPMDPN-GLSDPYVKLKLIPDPKNESKQ 56
Query: 163 KTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFD 222
           KT+  + TL+P ++E   F+L   D + R L + +W  D   RNDF+G +   + +++  
Sbjct: 57  KTKTIRSTLNPQWNESFTFKLKPSDKD-RRLSVEIWDWDRTTRNDFMGSLSFGV-SELMK 114
Query: 223 DPSPKCYPLQERSE 236
            P+   Y L  + E
Sbjct: 115 MPASGWYKLLNQEE 128

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 277 HVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVX 335
           HV +++AK+L P+  N + D + K  L+PD    SK KT  I+ + +PQWN +  ++   
Sbjct: 20  HVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK--L 77
Query: 336 XXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNL 367
                       +WD DR T N+F+G +   +
Sbjct: 78  KPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGV 109

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 106 IVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTR 165
            + G++   L ++     L + +   KDL   +  R R +PYVK+Y LPD+S   KR+T+
Sbjct: 2   FLSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPR-NPYVKIYFLPDRSDKNKRRTK 60
Query: 166 VKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMF--GRNDFLGEVMMSLENKVFD 222
             K TL P +++   +  +   +   R L +++W         ++FLGE+++ LE  + D
Sbjct: 61  TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 120
Query: 223 DPSPKCYPLQ 232
           D  P  Y LQ
Sbjct: 121 D-EPHWYKLQ 129

>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom Resolution Length = 129

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
           + + K Y LPD+   +K +T  +K++  P+WN T +Y  V            T+WD  R+
Sbjct: 40  NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 99
Query: 355 --TSNEFLGGIRLNL 367
               +EFLG I + L
Sbjct: 100 REEESEFLGEILIEL 114

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L + V+  K+L P D     SDPYVK+ L+PD     K+KT+  + TL+P ++E   F+L
Sbjct: 20  LHVTVRDAKNLIPXDPN-GLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSE 236
              D + R L + +W  D   RNDF G +   + +++   P+   Y L  + E
Sbjct: 79  KPSDKD-RRLSVEIWDWDRTTRNDFXGSLSFGV-SELXKXPASGWYKLLNQEE 129

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 277 HVLIKEAKSLCPVKSNTV-DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVX 335
           HV +++AK+L P   N + D + K  L+PD    SK KT  I+ + +PQWN +  ++   
Sbjct: 21  HVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFK--L 78
Query: 336 XXXXXXXXXXXTVWDHDRLTSNEFLGGIRLNL 367
                       +WD DR T N+F G +   +
Sbjct: 79  KPSDKDRRLSVEIWDWDRTTRNDFXGSLSFGV 110

>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 131 CKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLEDLE 189
            KDL   +  R R +PYVK+Y LPD+S   KR+T+  K TL P +++   +  +   +  
Sbjct: 30  AKDLPSREDGRPR-NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR 88
Query: 190 CRTLWLSVWHSDMF--GRNDFLGEVMMSLENKVFDDPSPKCYPLQ 232
            R L +++W         ++FLGE+++ LE  + DD  P  Y LQ
Sbjct: 89  ERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 132

>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2 Length = 141

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 295 DAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVXXXXXXXXXXXXTVWDHDRL 354
           + + K Y LPD+   +K +T  +K++  P+WN T +Y  V            T+WD  R+
Sbjct: 43  NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 102
Query: 355 --TSNEFLGGIRLNL 367
               +EFLG I + L
Sbjct: 103 REEESEFLGEILIEL 117

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
           +GE+   L YN    ++ +++ + ++L  +D     SDPYVKV+L+    +  K+KT  K
Sbjct: 2   RGELLLSLCYNPSANSIIVNIIKARNLKAMDIG-GTSDPYVKVWLMYKDKRVEKKKTVTK 60
Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
           K  L+P+F+E   F +  E L   T+ ++V   D   RND +G++ +S
Sbjct: 61  KRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLS 108

>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
           +GE+   L Y      L + V + + L   D     SDPYVKV L   K +  K+KT VK
Sbjct: 16  RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVS-GLSDPYVKVNLYHAKKRISKKKTHVK 74
Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMM 214
           K T + VF+E+  F +  E LE  ++   V  S+   RN+ +G +++
Sbjct: 75  KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVL 121

>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain Length = 171

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G+++ G +   K+G LE+ V + + L      +    PYVKVYLL + +   K+KTR+ +
Sbjct: 19  GDIQIGXED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR 76
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND---FLGEVMMSLEN 218
            TL P++ + L F    E  + + L + VW    +GR D   F G   + LE 
Sbjct: 77  KTLDPLYQQSLVFD---ESPQGKVLQVIVWGD--YGRXDHKCFXGVAQILLEE 124

>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 95  SGAGEGRYGSVIVK-GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLL 153
           SG G    G ++ K G++ F L+Y    G L + + + K+L  +D     SDPYVK++L+
Sbjct: 1   SGGG----GGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVG-GLSDPYVKIHLM 55
Query: 154 PDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVM 213
            +  +  K+KT +KK+TL+P ++E   F++  E ++   + ++V   D  G+ND +G+V 
Sbjct: 56  QNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVF 115
Query: 214 MS 215
           + 
Sbjct: 116 VG 117

>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G++ F L+Y    G L + + + K+L  +D     SDPYVK++L+ +  +  K+KT +KK
Sbjct: 4   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTIKK 62
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
           +TL+P ++E   F++  E ++   + ++V   D  G+ND +G+V + 
Sbjct: 63  NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 109

>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G++ F L+Y    G L + + + K+L  +D     SDPYVK++L+ +  +  K+KT +KK
Sbjct: 5   GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGG-LSDPYVKIHLMQNGKRLKKKKTTIKK 63
Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
           +TL+P ++E   F++  E ++   + ++V   D  G+ND +G+V + 
Sbjct: 64  NTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	419
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-86
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-39
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	7e-83
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-40
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	5e-58
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	1e-30
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	3e-05
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	4e-51
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	3e-30
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-04
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	7e-51
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-30
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	4e-05
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	6e-50
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	3e-34
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-05
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	7e-50
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	5e-29
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	1e-49
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	8e-33
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-04
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	6e-49
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	3e-29
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	1e-48
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	3e-29
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	3e-48
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	1e-28
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	4e-48
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	7e-27
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-04
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-47
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	5e-26
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-47
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	4e-25
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	7e-05
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	7e-47
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-30
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-04
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	7e-47
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	6e-31
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	9e-05
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-46
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-26
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	2e-04
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	1e-45
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	6e-32
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	5e-05
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	2e-45
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-31
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	4e-45
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	2e-36
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	1e-05
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-44
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-24
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	1e-44
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-27
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	4e-04
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-44
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	9e-27
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-04
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	3e-44
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	4e-31
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	2e-04
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	3e-34
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	6e-16
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-30
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	5e-14
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	3e-04
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-26
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-16
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	6e-23
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-11
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	3e-22
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	8e-13
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	4e-20
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	8e-11
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	9e-20
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	8e-11
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-18
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-10
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-18
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	3e-11
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	6e-18
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-12
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	2e-17
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	7e-11
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-11
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	4e-07
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	3e-10
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	1e-09
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-10
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-08
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	4e-07
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	3e-06

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  263 bits (675), Expect = 2e-86
 Identities = 82/313 (26%), Positives = 151/313 (48%), Gaps = 36/313 (11%)

Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
             G++++ L Y+++   L + + Q  +L  +D     SDPYVKV+LLPDK K  K +T+V
Sbjct: 4   KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKKK--KFETKV 60

Query: 167 KKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSP 226
            + TL+PVF+E   F++   +L  +TL ++V+  D F ++D +GE  + +    F   + 
Sbjct: 61  HRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE 120

Query: 227 KCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSL 286
           +   LQ   +   E     G++   L++VP                 G L V+I EAK+L
Sbjct: 121 EWRDLQSAEKEEQE---KLGDICFSLRYVP---------------TAGKLTVVILEAKNL 162

Query: 287 CPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLE 345
             +      D + K +L+ +  R  K KT I K + +P +N +  + +V  E++ +  + 
Sbjct: 163 KKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF-EVPFEQIQKVQVV 221

Query: 346 LTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCI 405
           +TV D+D++  N+ +G + +               +S+G E+  W  M+  P   +    
Sbjct: 222 VTVLDYDKIGKNDAIGKVFV-------------GYNSTGAELRHWSDMLANPRRPIAQWH 268

Query: 406 PLRSSLEFSSPIK 418
            L+   E  + + 
Sbjct: 269 TLQVEEEVDAMLA 281

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score =  141 bits (357), Expect = 3e-39
 Identities = 57/255 (22%), Positives = 102/255 (40%), Gaps = 45/255 (17%)

Query: 2   LARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQAS-------PDDLSAHS 54
           L   K  K +T+V + TL+PVF+E         F V   +    +        D  S H 
Sbjct: 48  LLPDKKKKFETKVHRKTLNPVFNEQFT------FKVPYSELAGKTLVMAVYDFDRFSKHD 101

Query: 55  EAGLNKSVSSILTDDDVTERLPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFG 114
             G        +   D               + +                    G++ F 
Sbjct: 102 IIG---EFKVPMNTVDFGHVTEEWRDLQSAEKEEQE----------------KLGDICFS 142

Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV 174
           L+Y    G L + + + K+L  +D     SDPYVK++L+ +  +  K+KT +KK+TL+P 
Sbjct: 143 LRYVPTAGKLTVVILEAKNLKKMDVGGL-SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 201

Query: 175 FDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE---------NKVFDDP- 224
           ++E   F++  E ++   + ++V   D  G+ND +G+V +            + +  +P 
Sbjct: 202 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPR 261

Query: 225 SPKC--YPLQERSEI 237
            P    + LQ   E+
Sbjct: 262 RPIAQWHTLQVEEEV 276

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  255 bits (652), Expect = 7e-83
 Identities = 83/294 (28%), Positives = 138/294 (46%), Gaps = 24/294 (8%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G + F L+Y Y    L + + Q  DL   D     SDPYVK+YLLPD+ K  K +T+V +
Sbjct: 7   GRISFALRYLYGSDQLVVRILQALDLPAKD-SNGFSDPYVKIYLLPDRKK--KFQTKVHR 63

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
            TL+P+F+E  +F + L +L  R L  SV+  D F R+D +G+V++    ++ + P  + 
Sbjct: 64  KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRP 123

Query: 229 YPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCP 288
                     ++     GEL   L ++P                 G L V I +A +L  
Sbjct: 124 LWRDILEGGSEK--ADLGELNFSLCYLPT---------------AGLLTVTIIKASNLKA 166

Query: 289 VKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELT 347
           +      D + KA L+ +  R  K KT I K + +P +N  +V+ DV+ E +    L + 
Sbjct: 167 MDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAPESVENVGLSIA 225

Query: 348 VWDHDRLTSNEFLGGIRLNLGHGKHYSKL--VDWMDSSGKEILLWQQMMERPNF 399
           V D+D +  NE +G  R+       + +    + + +  K +  W Q++E    
Sbjct: 226 VVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTL 279

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score =  144 bits (366), Expect = 2e-40
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 32/222 (14%)

Query: 2   LARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQAS-------PDDLSAHS 54
           L   +  K +T+V + TL+P+F+E  +      FSV   +  Q          D  S H 
Sbjct: 49  LLPDRKKKFQTKVHRKTLNPIFNETFQ------FSVPLAELAQRKLHFSVYDFDRFSRHD 102

Query: 55  EAGLNKSVSSILTDDDVTERLPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFG 114
             G    + ++L   +     P   + +L   S+                    GE+ F 
Sbjct: 103 LIG-QVVLDNLLELAEQPPDRPLW-RDILEGGSEKADL----------------GELNFS 144

Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV 174
           L Y    G L + + +  +L  +D     SDPYVK  L+ +  +  KRKT +KK+TL+P 
Sbjct: 145 LCYLPTAGLLTVTIIKASNLKAMDLTGF-SDPYVKASLISEGRRLKKRKTSIKKNTLNPT 203

Query: 175 FDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
           ++E L F +  E +E   L ++V   D  G N+ +G   +  
Sbjct: 204 YNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGP 245

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  186 bits (473), Expect = 5e-58
 Identities = 58/135 (42%), Positives = 85/135 (62%)

Query: 102 YGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGK 161
            G++ V G + F L+Y  +  +L +HVK+C  LA  D  ++RS+PYVK YLLPDKS+ GK
Sbjct: 3   LGNIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGK 62

Query: 162 RKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF 221
           RKT +K+ T++P++DE L++++    L  RTL  SVWH   FGRN FLGE  + +++   
Sbjct: 63  RKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKL 122

Query: 222 DDPSPKCYPLQERSE 236
           D     C PL  +  
Sbjct: 123 DKKLDHCLPLHGKIS 137

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score =  114 bits (287), Expect = 1e-30
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 3/114 (2%)

Query: 270 SAAKGSLHVLIKEAKSLCP--VKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNH 327
                SL V +KE   L          + + K YLLPDK R  K KT I + + +P ++ 
Sbjct: 19  EQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDE 78

Query: 328 TVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
           T+ Y ++    L++R L+ +VW H R   N FLG   + +   K   KL   + 
Sbjct: 79  TLRY-EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLP 131

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 6/41 (14%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQ 44
          +S+ GKRKT +K+ T++P++DE L+      + +      Q
Sbjct: 57 KSRQGKRKTSIKRDTVNPLYDETLR------YEIPESLLAQ 91

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  167 bits (426), Expect = 4e-51
 Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)

Query: 95  SGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP 154
           S A           G +EF L Y+     L+  + + K L P+D+    +DPYVK++LLP
Sbjct: 2   SEANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSN-GLADPYVKLHLLP 60

Query: 155 DKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVM 213
             SK+ K +T+  ++T +PV++E L++  +T ED++ +TL +SV   D FG N+F+GE  
Sbjct: 61  GASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 120

Query: 214 MSLENKVFDDPSPKCYPLQ 232
            SL+    +        L+
Sbjct: 121 FSLKKLKANQRKNFNICLE 139

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score =  113 bits (284), Expect = 3e-30
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 1/101 (0%)

Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
                +L   I  AK L P+  +   D + K +LLP   +++K +T  ++ + +P WN T
Sbjct: 25  DQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNET 84

Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
           + Y  ++ E++  + L ++V D D+   NEF+G  R +L  
Sbjct: 85  LQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKK 125

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLK 28
           SK+ K +T+  ++T +PV++E L+
Sbjct: 62 ASKSNKLRTKTLRNTRNPVWNETLQ 86

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score =  167 bits (424), Expect = 7e-51
 Identities = 45/130 (34%), Positives = 79/130 (60%), Gaps = 4/130 (3%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G+++  ++++ ++  L + V  C++L         SDPYV++YLLPDK ++G+RKT V K
Sbjct: 11  GQIQLTIRHSSQRNKLIVVVHACRNLIAFS--EDGSDPYVRMYLLPDKRRSGRRKTHVSK 68

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRND--FLGEVMMSLENKVFDDPSP 226
            TL+PVFD+   F ++L +++ RTL ++V +S  F   D   LG+V+++L ++       
Sbjct: 69  KTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWT 128

Query: 227 KCYPLQERSE 236
           + Y L E S 
Sbjct: 129 QWYDLTEDSG 138

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score =  113 bits (285), Expect = 1e-30
 Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 270 SAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTV 329
           S+ +  L V++   ++L     +  D + + YLLPDK R+ + KT + K++ +P ++ + 
Sbjct: 20  SSQRNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSF 79

Query: 330 VYRDVSLEELSERCLELTVWDHDRLTSNE--FLGGIRLNLGHGKHYSKLVDWMD 381
            +  VSL E+  R L++ V +     S +   LG + + L   +       W D
Sbjct: 80  DF-SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYD 132

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ 41
          + ++G+RKT V K TL+PVFD+         FSVS  +
Sbjct: 56 KRRSGRRKTHVSKKTLNPVFDQSFD------FSVSLPE 87

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score =  164 bits (417), Expect = 6e-50
 Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 5/132 (3%)

Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
             G V+  + Y  + G L I V   KDL   D      +PYVK YLLPD  K  KRKT++
Sbjct: 7   GSGAVKLSVSY--RNGTLFIMVMHIKDLVTED--GADPNPYVKTYLLPDTHKTSKRKTKI 62

Query: 167 KKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPS 225
            + T +P F+E+L +   + E L  R L LSV  ++    N FLG + + L++      +
Sbjct: 63  SRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKET 122

Query: 226 PKCYPLQERSEI 237
            K Y L   + +
Sbjct: 123 VKWYQLTAATYL 134

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score =  123 bits (311), Expect = 3e-34
 Identities = 37/109 (33%), Positives = 55/109 (50%)

Query: 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
            G+L +++   K L        + + K YLLPD  + SK KT I +++ +P +N  +VY 
Sbjct: 19  NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78

Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
             S E L +R L+L+V   + L  N FLGGI L L       + V W  
Sbjct: 79  GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQ 127

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLK 28
            K  KRKT++ + T +P F+E+L 
Sbjct: 52 THKTSKRKTKISRKTRNPTFNEMLV 76

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  164 bits (418), Expect = 7e-50
 Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 3/142 (2%)

Query: 92  SVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVY 151
            +  G G      V   G++++ L Y+++   L + + Q  +L  +D     SDPYVKV+
Sbjct: 4   GIGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMG-GTSDPYVKVF 62

Query: 152 LLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGE 211
           LLPDK K  K +T+V + TL+PVF+E   F++   +L  +TL ++V+  D F ++D +GE
Sbjct: 63  LLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGE 120

Query: 212 VMMSLENKVFDDPSPKCYPLQE 233
             + +    F   + +   LQ 
Sbjct: 121 FKVPMNTVDFGHVTEEWRDLQS 142

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score =  109 bits (275), Expect = 5e-29
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
                 L V I +A  L  +    T D + K +LLPDK +  K +T + +++ +P +N  
Sbjct: 30  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQ 87

Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
             +  V   EL  + L + V+D DR + ++ +G  ++ +          +W D
Sbjct: 88  FTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  165 bits (419), Expect = 1e-49
 Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 13/166 (7%)

Query: 87  SDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDP 146
           S    ++Y      R G +  +G++   L Y+ +QG L + + +C  LA +D     SDP
Sbjct: 2   SARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANG-YSDP 60

Query: 147 YVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRN 206
           +VK++L PD  K  K KT++KK TL+P F+E   + +   DL  ++L +SVW  D+   N
Sbjct: 61  FVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSN 120

Query: 207 DFLGEVMMSLE---------NKVFDDPSPKC---YPLQERSEILDE 240
           D++G   + +           +   +   K    + LQ  + +  +
Sbjct: 121 DYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENHVSSD 166

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score =  120 bits (303), Expect = 8e-33
 Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 30/171 (17%)

Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLP 304
           G++++ L +                  +G L V I     L  + +N   D F K +L P
Sbjct: 24  GKILVSLMYST---------------QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKP 68

Query: 305 DKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIR 364
           D G+ +KHKT I K++ +P++N    Y D+   +L+++ L+++VWD+D   SN+++GG +
Sbjct: 69  DMGKKAKHKTQIKKKTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQ 127

Query: 365 LNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLEFSS 415
           L +              + G+ +  W + ++  +  +E    L++    SS
Sbjct: 128 LGI-------------SAKGERLKHWYECLKNKDKKIERWHQLQNENHVSS 165

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 6/38 (15%)

Query: 4   RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ 41
             K  K KT++KK TL+P F+E         + +    
Sbjct: 70  MGKKAKHKTQIKKKTLNPEFNEEFF------YDIKHSD 101

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  162 bits (411), Expect = 6e-49
 Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 4/141 (2%)

Query: 97  AGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK 156
              G  GS    G ++F + YN+++  L + + + ++L   D     SDP+VK+YLLPDK
Sbjct: 1   GSSGSSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFS-GTSDPFVKIYLLPDK 59

Query: 157 SKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
               K +T+VK+  L+P ++E   F+    E +  R L+L V   D F RND +GEV + 
Sbjct: 60  KH--KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIP 117

Query: 216 LENKVFDDPSPKCYPLQERSE 236
           L              L+    
Sbjct: 118 LNKVDLTQMQTFWKDLKPSGP 138

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  110 bits (276), Expect = 3e-29
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
           +  + +L V I +A+ L     S T D F K YLLPDK    K +T + +++ +P WN T
Sbjct: 22  NFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKH--KLETKVKRKNLNPHWNET 79

Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
            ++     E++ +R L L V D+DR + N+ +G + + L           W D
Sbjct: 80  FLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKD 132

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score =  161 bits (409), Expect = 1e-48
 Identities = 50/144 (34%), Positives = 86/144 (59%), Gaps = 13/144 (9%)

Query: 103 GSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-- 160
            S  + GE++  + Y+   G L IH+ Q ++L P D     SDP+VKVYLLP + +    
Sbjct: 1   ASHPITGEIQLQINYD--LGNLIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRGQVMVV 57

Query: 161 -------KRKTRVKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEV 212
                  KR+T+  + +L+P +++ + ++ +++E L  +TL ++VW  D F  NDFLGEV
Sbjct: 58  QNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEV 117

Query: 213 MMSLENKVFDDPSPKCYPLQERSE 236
           ++ L +    D +P+ YPL+E++E
Sbjct: 118 LIDLSSTSHLDNTPRWYPLKEQTE 141

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score =  110 bits (276), Expect = 3e-29
 Identities = 43/117 (36%), Positives = 71/117 (60%), Gaps = 10/117 (8%)

Query: 273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRA---------SKHKTGIIKRSTS 322
            G+L + I +A++L P  +N   D F K YLLP +G+           K +T  +++S +
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDW 379
           P+WN TV+Y+ +S+E+L ++ LE+TVWD+DR +SN+FLG + ++L    H      W
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRW 133

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  160 bits (407), Expect = 3e-48
 Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 3/135 (2%)

Query: 99  EGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK 158
           +         G++++ L Y+++   L + + Q  +L  +D     SDPYVKV+LLPDK K
Sbjct: 19  KEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKKK 77

Query: 159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
             K +T+V + TL+PVF+E   F++   +L  +TL ++V+  D F ++D +GE  + +  
Sbjct: 78  --KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 135

Query: 219 KVFDDPSPKCYPLQE 233
             F   + +   LQ 
Sbjct: 136 VDFGHVTEEWRDLQS 150

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score =  109 bits (273), Expect = 1e-28
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
                 L V I +A  L  +    T D + K +LLPDK +  K +T + +++ +P +N  
Sbjct: 38  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQ 95

Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
             +  V   EL  + L + V+D DR + ++ +G  ++ +          +W D
Sbjct: 96  FTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 147

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  160 bits (406), Expect = 4e-48
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 95  SGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP 154
           SG G G   S+  +G +      +  +  L + V+  K+L P+D     SDPYVK+ L+P
Sbjct: 6   SGGGGGILDSMERRGRIYIQAHID--REVLIVVVRDAKNLVPMD-PNGLSDPYVKLKLIP 62

Query: 155 DKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMM 214
           D     K+KT+  K +L+P ++E  +FQL   D + R L + +W  D+  RNDF+G +  
Sbjct: 63  DPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSF 121

Query: 215 SLENKVFDDPSPKCYPLQERSE 236
            + +++        + L  + E
Sbjct: 122 GI-SELQKAGVDGWFKLLSQEE 142

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score =  104 bits (260), Expect = 7e-27
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVY 331
           +  L V++++AK+L P+  N   D + K  L+PD    SK KT  IK S +P+WN T  +
Sbjct: 30  REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89

Query: 332 RDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
             +  E   +R L + +WD D  + N+F+G +   +  
Sbjct: 90  -QLK-ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISE 125

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLK 28
               K+KT+  K +L+P ++E  +
Sbjct: 64 PKSESKQKTKTIKCSLNPEWNETFR 88

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score =  159 bits (403), Expect = 1e-47
 Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 8/142 (5%)

Query: 100 GRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDT------KRQRSDPYVKVYLL 153
           G  GS    G + F  QY+     L + V + +DL P  +          S+PYVK+ LL
Sbjct: 4   GSSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLL 63

Query: 154 PDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVM 213
           PD+     ++T VK+ T  PVF+E   F++   + + RTL L+V   D F R+  +G+V 
Sbjct: 64  PDQKN--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121

Query: 214 MSLENKVFDDPSPKCYPLQERS 235
           + L              L    
Sbjct: 122 VPLCEVDLVKGGHWWKALIPSG 143

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score =  101 bits (254), Expect = 5e-26
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 11/120 (9%)

Query: 270 SAAKGSLHVLIKEAKSLCPV--------KSNTVDAFCKAYLLPDKGRASKHKTGIIKRST 321
                 L V + EA+ L P              + + K  LLPD+      +TG+ +++ 
Sbjct: 22  DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKN--SKQTGVKRKTQ 79

Query: 322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
            P +     + ++   E   R L LTV D D+ + +  +G + + L           W  
Sbjct: 80  KPVFEERYTF-EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKA 138

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score =  159 bits (403), Expect = 2e-47
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 6/135 (4%)

Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
             G+++ G++   K+G LE+ V + + L      +    PYVKVYLL + +   K+KTR+
Sbjct: 17  AMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRI 74

Query: 167 KKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS-DMFGRNDFLGEVMMSLENKVFDDPS 225
            + TL P++ + L F  + +    + L + VW          F+G   + LE        
Sbjct: 75  ARKTLDPLYQQSLVFDESPQG---KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMV 131

Query: 226 PKCYPLQERSEILDE 240
              Y L   S ++D 
Sbjct: 132 IGWYKLFPPSSLVDP 146

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 99.9 bits (249), Expect = 4e-25
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 7/112 (6%)

Query: 273 KGSLHVLIKEAKSLCPV--KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVV 330
           KG L V +  A+SL       +T   + K YLL +    +K KT I +++  P +  ++V
Sbjct: 29  KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLV 88

Query: 331 YRDVSLEELSERCLELTVW-DHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
           +     E    + L++ VW D+ R+    F+G  ++ L      S ++ W  
Sbjct: 89  FD----ESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYK 136

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLK 28
           +   K+KTR+ + TL P++ + L 
Sbjct: 64 GACIAKKKTRIARKTLDPLYQQSLV 88

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score =  156 bits (397), Expect = 7e-47
 Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
             G++   L ++     L + +   KDL   +   +  +PYVK+Y LPD+S   KR+T+ 
Sbjct: 6   SGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDG-RPRNPYVKIYFLPDRSDKNKRRTKT 64

Query: 167 KKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMF--GRNDFLGEVMMSLENKVFDD 223
            K TL P +++   +  +   +   R L +++W         ++FLGE+++ L      D
Sbjct: 65  VKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL-ETALLD 123

Query: 224 PSPKCYPLQERSE 236
             P  Y LQ    
Sbjct: 124 DEPHWYKLQTHDS 136

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score =  113 bits (286), Expect = 1e-30
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 3/103 (2%)

Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
                 L V I  AK L         + + K Y LPD+   +K +T  +K++  P+WN T
Sbjct: 17  DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 76

Query: 329 VVYRDVSLEELSERCLELTVWDHDRL--TSNEFLGGIRLNLGH 369
            +Y  V   E  ER LE+T+WD  R+    +EFLG I + L  
Sbjct: 77  FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 119

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLK 28
          RS   KR+T+  K TL P +++   
Sbjct: 54 RSDKNKRRTKTVKKTLEPKWNQTFI 78

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score =  156 bits (396), Expect = 7e-47
 Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 5/130 (3%)

Query: 106 IVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTR 165
            + G++   L ++     L + +   KDL   +   +  +PYVK+Y LPD+S   KR+T+
Sbjct: 2   FLSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDG-RPRNPYVKIYFLPDRSDKNKRRTK 60

Query: 166 VKKHTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMF--GRNDFLGEVMMSLENKVFD 222
             K TL P +++   +  +   +   R L +++W         ++FLGE+++ L      
Sbjct: 61  TVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL-ETALL 119

Query: 223 DPSPKCYPLQ 232
           D  P  Y LQ
Sbjct: 120 DDEPHWYKLQ 129

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score =  114 bits (287), Expect = 6e-31
 Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 3/103 (2%)

Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
                 L V I  AK L         + + K Y LPD+   +K +T  +K++  P+WN T
Sbjct: 14  DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 73

Query: 329 VVYRDVSLEELSERCLELTVWDHDRL--TSNEFLGGIRLNLGH 369
            +Y  V   E  ER LE+T+WD  R+    +EFLG I + L  
Sbjct: 74  FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELET 116

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLK 28
          RS   KR+T+  K TL P +++   
Sbjct: 51 RSDKNKRRTKTVKKTLEPKWNQTFI 75

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  155 bits (395), Expect = 1e-46
 Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 5/138 (3%)

Query: 99  EGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK 158
            G  GS     ++ + L Y+ ++  L +   +              D YV+  +      
Sbjct: 3   SGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNH----DGGCDCYVQGSVANRTGS 58

Query: 159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
             + +T +KK  L   ++E L   L  E+L   TL L++   D F R+   GE+ + L+ 
Sbjct: 59  V-EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDG 117

Query: 219 KVFDDPSPKCYPLQERSE 236
                 + +   L+    
Sbjct: 118 TSVPLGAAQWGELKTSGP 135

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  103 bits (258), Expect = 1e-26
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 4/109 (3%)

Query: 273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
           K  L V   EA +         D + +  +    G   + +T + KR     W   +V  
Sbjct: 25  KAELFVTRLEAVTSNH--DGGCDCYVQGSVANRTGS-VEAQTALKKRQLHTTWEEGLVL- 80

Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
            ++ EEL    L LT+   DR + +   G +RL L           W +
Sbjct: 81  PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 7/41 (17%), Positives = 19/41 (46%), Gaps = 6/41 (14%)

Query: 1  LLARSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ 41
          +  R+ + + +T +KK  L   ++E L         ++ ++
Sbjct: 52 VANRTGSVEAQTALKKRQLHTTWEEGLV------LPLAEEE 86

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  153 bits (389), Expect = 1e-45
 Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 1/121 (0%)

Query: 96  GAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPD 155
           G   G  G    +GE+   L Y      L + V + + L   D     SDPYVKV L   
Sbjct: 4   GISGGGGGIPSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSG-LSDPYVKVNLYHA 62

Query: 156 KSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
           K +  K+KT VKK T + VF+E+  F +  E LE  ++   V  S+   RN+ +G +++ 
Sbjct: 63  KKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLG 122

Query: 216 L 216
            
Sbjct: 123 A 123

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score =  117 bits (296), Expect = 6e-32
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 30/160 (18%)

Query: 244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYL 302
            +GEL++ L +                    +L V++ +A+ L     +   D + K  L
Sbjct: 15  GRGELLVSLCYQS---------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNL 59

Query: 303 LPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGG 362
              K R SK KT + K + +  +N   V+ D+  E L E  +E  V D +R + NE +G 
Sbjct: 60  YHAKKRISKKKTHVKKCTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGR 118

Query: 363 IRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVE 402
           + L                + G     W+++ + P   + 
Sbjct: 119 LVLGA-------------TAEGSGGGHWKEICDFPRRQIA 145

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQAS 46
          + +  K+KT VKK T + VF+E+        F +  +  ++ S
Sbjct: 63 KKRISKKKTHVKKCTPNAVFNELFV------FDIPCESLEEIS 99

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  152 bits (387), Expect = 2e-45
 Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 3/116 (2%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G + F L+YN+++ A  +++K+ + L  +D +   SDPY+K+ +LP+K    K KTRV +
Sbjct: 9   GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKTRVLR 66

Query: 169 HTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD 223
            TL P FDE   F  +    ++   L  ++   D F R+D +GEV++ L      +
Sbjct: 67  KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score =  116 bits (293), Expect = 1e-31
 Identities = 28/131 (21%), Positives = 65/131 (49%), Gaps = 14/131 (10%)

Query: 270 SAAKGSLHVLIKEAKSLCPV--KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNH 327
           +  + +  V IKEA+ L  +  +S T D + K  +LP+K    K KT +++++  P ++ 
Sbjct: 18  NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK--KHKVKTRVLRKTLDPAFDE 75

Query: 328 TVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEI 387
           T  +  +   ++ E  L  T+   DR + ++ +G + + L            ++ S  ++
Sbjct: 76  TFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG----------IELSEGKM 125

Query: 388 LLWQQMMERPN 398
           L+ ++++  P+
Sbjct: 126 LMNREIISGPS 136

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  152 bits (385), Expect = 4e-45
 Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 1/109 (0%)

Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
           +GE+   L YN    ++ +++ + ++L  +D     SDPYVKV+L+    +  K+KT  K
Sbjct: 2   RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGG-TSDPYVKVWLMYKDKRVEKKKTVTK 60

Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
           K  L+P+F+E   F +  E L   T+ ++V   D   RND +G++ +S 
Sbjct: 61  KRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSW 109

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score =  128 bits (325), Expect = 2e-36
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 30/167 (17%)

Query: 244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYL 302
           S+GEL++ L + P               +  S+ V I +A++L  +    T D + K +L
Sbjct: 1   SRGELLLSLCYNP---------------SANSIIVNIIKARNLKAMDIGGTSDPYVKVWL 45

Query: 303 LPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGG 362
           +    R  K KT   KR+ +P +N +  + D+  E+L E  + +TV D D+L+ N+ +G 
Sbjct: 46  MYKDKRVEKKKTVTKKRNLNPIFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIGK 104

Query: 363 IRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRS 409
           I L+               S   E+  W+ M+ RP   V     L++
Sbjct: 105 IYLSW-------------KSGPGEVKHWKDMIARPRQPVAQWHQLKA 138

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQAS 46
            +  K+KT  KK  L+P+F+E         F + +++ ++ +
Sbjct: 49 DKRVEKKKTVTKKRNLNPIFNESFA------FDIPTEKLRETT 85

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score =  151 bits (383), Expect = 1e-44
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 3/125 (2%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKR-KTRVK 167
             ++  L+Y+ K     I + Q  +L+ +  + Q     ++V +LP         +TR  
Sbjct: 30  TRIQIALKYDEKNKQFAILIIQLSNLSALLQQ-QDQKVNIRVAVLPCSESTTCLFRTRPL 88

Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL-ENKVFDDPSP 226
             + + VF+EV    ++   L  +TL + V  +D     + LG   +SL E     + S 
Sbjct: 89  DASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERST 148

Query: 227 KCYPL 231
           + Y L
Sbjct: 149 RWYNL 153

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 98.3 bits (245), Expect = 1e-24
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 270 SAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASK-HKTGIIKRSTSPQWNH 327
                   +LI +  +L  + +        +  +LP     +   +T  +  S +  +N 
Sbjct: 39  DEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNE 98

Query: 328 TVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEI 387
                 +S   L ++ L + V   DR    E LGG +++L            +  SG+  
Sbjct: 99  VFWV-SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAE----------VCRSGERS 147

Query: 388 LLWQQMM 394
             W  ++
Sbjct: 148 TRWYNLL 154

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  150 bits (381), Expect = 2e-44
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 101 RYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG 160
            + S  V+G  +  L  + +   L +H+ + K L          DPYVK+ L+P+ S+  
Sbjct: 6   HHHSHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ--PGTCDPYVKISLIPEDSRLR 63

Query: 161 KRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGR-NDFLGEVMMSLENK 219
            +KT+       P F E   F +  ED + + L ++VW+     R +  +G +   +++ 
Sbjct: 64  HQKTQTVPDCRDPAFHEHFFFPVQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122

Query: 220 VFDD-PSPKCYPLQERSE 236
           +  D      Y L     
Sbjct: 123 LTPDKEISGWYYLLGEHL 140

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score =  103 bits (260), Expect = 9e-27
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 4/114 (3%)

Query: 270 SAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTV 329
            A    L + I E K L   +  T D + K  L+P+  R    KT  +     P ++   
Sbjct: 23  DAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHF 82

Query: 330 VYRDVSLEELSERCLELTVWDHDRLT-SNEFLGGIRLNLGHGKHYSKLVD-WMD 381
            +  V  E+  +R L +TVW+    +  +  +G +   +       K +  W  
Sbjct: 83  FF-PVQEEDDQKR-LLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYY 134

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 6/41 (14%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQ 44
           S+   +KT+       P F E         F V  + D++
Sbjct: 59 DSRLRHQKTQTVPDCRDPAFHEHFF------FPVQEEDDQK 93

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  150 bits (381), Expect = 3e-44
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 13/158 (8%)

Query: 100 GRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKA 159
           G  G +   G++ F L+Y    G L + + + K+L  +D     SDPYVK++L+ +  + 
Sbjct: 3   GGGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGG-LSDPYVKIHLMQNGKRL 61

Query: 160 GKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE-- 217
            K+KT +KK+TL+P ++E   F++  E ++   + ++V   D  G+ND +G+V +     
Sbjct: 62  KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121

Query: 218 -------NKVFDDP-SPKC--YPLQERSEILDELICSK 245
                  + +  +P  P    + LQ   E+   L   K
Sbjct: 122 GAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAVKK 159

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score =  115 bits (291), Expect = 4e-31
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 30/174 (17%)

Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLP 304
           G++   L++VP                 G L V+I EAK+L  +      D + K +L+ 
Sbjct: 12  GDICFSLRYVP---------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ 56

Query: 305 DKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIR 364
           +  R  K KT I K + +P +N +  + +V  E++ +  + +TV D+D++  N+ +G + 
Sbjct: 57  NGKRLKKKKTTIKKNTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVF 115

Query: 365 LNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLEFSSPIK 418
           +               +S+G E+  W  M+  P   +     L+   E  + + 
Sbjct: 116 VG-------------YNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLA 156

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 6/43 (13%)

Query: 4  RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQAS 46
            +  K+KT +KK+TL+P ++E         F V  +Q ++  
Sbjct: 58 GKRLKKKKTTIKKNTLNPYYNESFS------FEVPFEQIQKVQ 94

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  123 bits (311), Expect = 3e-34
 Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 16/156 (10%)

Query: 109 GEVEFGLQYNYKQ-GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPD-KSKAGKRKTRV 166
               FGL  + +    + + V     LA  D     SDPYV+V L           +T+ 
Sbjct: 6   AVEVFGLLEDEENSRIVRVRVIAGIGLAKKD-ILGASDPYVRVTLYDPMNGVLTSVQTKT 64

Query: 167 KKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPS- 225
            K +L+P ++E + F++  +      L   V+  +   R+DFLG+V + L     ++P  
Sbjct: 65  IKKSLNPKWNEEILFRVHPQQ---HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRL 121

Query: 226 -----PKCYPLQERSEILDELICSKGELIIGLKFVP 256
                 K + L  RS         KG L + + ++P
Sbjct: 122 ERPYTFKDFVLHPRSHKSRV----KGYLRLKMTYLP 153

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 73.6 bits (181), Expect = 6e-16
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPD-KGRASKHKTGIIKRSTSPQWNHTVVY 331
             + V +     L         D + +  L     G  +  +T  IK+S +P+WN  +++
Sbjct: 20  RIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILF 79

Query: 332 RDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
           R        +  L   V+D +RLT ++FLG + + L
Sbjct: 80  RVHP----QQHRLLFEVFDENRLTRDDFLGQVDVPL 111

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  113 bits (284), Expect = 4e-30
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 15/179 (8%)

Query: 117 YNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK-SKAGKRKTRVKKHTLSPVF 175
           +N     + + V     LA  D     SDPYV+V L           +T+  K +L+P +
Sbjct: 3   HNDDTRVVRVKVIAGIGLAKKD-ILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKW 61

Query: 176 DEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSP------KCY 229
           +E + F++  +      +   V+  +   R+DFLG+V + L     ++P        K +
Sbjct: 62  NEEILFRVLPQR---HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDF 118

Query: 230 PLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCP 288
            L  RS         KG L + + ++P   S   +A ++     G + +   +A +  P
Sbjct: 119 VLHPRSHKSR----VKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATHLP 173

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 68.8 bits (168), Expect = 5e-14
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 6/98 (6%)

Query: 274 GSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDK-GRASKHKTGIIKRSTSPQWNHTVVY 331
             + V +     L         D + +  L     G  +  +T  IK+S +P+WN  +++
Sbjct: 8   RVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILF 67

Query: 332 RDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
           R +         +   V+D +RLT ++FLG + + L  
Sbjct: 68  RVLP----QRHRILFEVFDENRLTRDDFLGQVDVPLYP 101

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 34/160 (21%)

Query: 4   RSKAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQ--------DKQASPDDLSAHSE 55
                  +T+  K +L+P ++E +       F V  Q+        D+    + L+    
Sbjct: 42  SGILTSVQTKTIKKSLNPKWNEEIL------FRVLPQRHRILFEVFDE----NRLTRDDF 91

Query: 56  AGLNK-SVSSILTDDDVTERLPHHNKSLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFG 114
            G     +  + T++   ER       +L  RS                   VKG +   
Sbjct: 92  LGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR---------------VKGYLRLK 136

Query: 115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP 154
           + Y  K G+ + +  Q ++L P      + D    +   P
Sbjct: 137 MTYLPKNGSEDENADQAEELEPGWVVLDQPDAATHLPHPP 176

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  102 bits (257), Expect = 1e-26
 Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 10/142 (7%)

Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
            G L + V+   ++        + DP V V    +K     +KT+   + L+PV++E+L+
Sbjct: 6   SGMLRVIVESASNIPKTKF--GKPDPIVSVIFKDEK-----KKTKKVDNELNPVWNEILE 58

Query: 181 FQLT-LEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILD 239
           F L  +      +L + V   +  G+N  +G   ++L++   D      Y L        
Sbjct: 59  FDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKG 118

Query: 240 ELICSKGELIIGLKFVPPEDSS 261
           +       + + + + PP   S
Sbjct: 119 QDT--GATIDLVIGYDPPSGPS 138

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 75.1 bits (185), Expect = 1e-16
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 269 SSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
           SS + G L V+++ A ++   K    D         +K      KT  +    +P WN  
Sbjct: 2   SSGSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEK-----KKTKKVDNELNPVWNEI 56

Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
           + +    +       L + V D + +  N+ +G   + L
Sbjct: 57  LEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVAL 95

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 92.8 bits (231), Expect = 6e-23
 Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 16/142 (11%)

Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
            G LE+ +   K L   D      DPYV++          ++    +    +P ++E   
Sbjct: 9   HGTLEVVLVSAKGLEDADFLN-NMDPYVQLTCRTQD----QKSNVAEGMGTTPEWNE--T 61

Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC-YPLQERSEILD 239
           F  T+ +     L   ++  D+   +D +GE  + LE    +   P   Y + +  E   
Sbjct: 62  FIFTVSEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEE--- 117

Query: 240 ELICSKGELIIGLKFVPPEDSS 261
                KGE+ + L F P   SS
Sbjct: 118 ----YKGEIWVALSFKPSGPSS 135

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 265 AKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP 323
               SS   G+L V++  AK L        +D + +           +         T+P
Sbjct: 1   GSSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD----QKSNVAEGMGTTP 56

Query: 324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
           +WN T ++            L+  ++D D  T ++ +G   + L  
Sbjct: 57  EWNETFIFTVSE----GTTELKAKIFDKDVGTEDDAVGEATIPLEP 98

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 90.8 bits (226), Expect = 3e-22
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 15/135 (11%)

Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
            G L++ V +  DL   D    +SDP+  + L  D+      +T      L+P +++V  
Sbjct: 12  VGILQVKVLKAADLLAAD-FSGKSDPFCLLELGNDR-----LQTHTVYKNLNPEWNKV-- 63

Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDE 240
           F   ++D+    L ++V+  D     DFLG+V + L +    D  P CY L+ +   L++
Sbjct: 64  FTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLS--IRDGQPNCYVLKNKD--LEQ 118

Query: 241 LICSKGELIIGLKFV 255
               KG + + +  +
Sbjct: 119 A--FKGVIYLEMDLI 131

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 64.2 bits (157), Expect = 8e-13
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 10/106 (9%)

Query: 263 SSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST 321
           SS         G L V + +A  L     +   D FC   L  D+      +T  + ++ 
Sbjct: 2   SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDR-----LQTHTVYKNL 56

Query: 322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
           +P+WN    +    + +     LE+TV+D D     +FLG + + L
Sbjct: 57  NPEWNKVFTFPIKDIHD----VLEVTVFDEDGDKPPDFLGKVAIPL 98

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 84.7 bits (210), Expect = 4e-20
 Identities = 17/120 (14%), Positives = 53/120 (44%), Gaps = 7/120 (5%)

Query: 124 LEIHVKQCKDLAPVDTKRQ--RSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
             + V +   +            DPYV++++        +++TR   + ++PV++E   F
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDS--RKRTRHFNNDINPVWNET--F 60

Query: 182 QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDEL 241
           +  L+  +   L +++  ++ +  ++ LG    ++ +    +     +   + +E++ E+
Sbjct: 61  EFILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEM 119

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 276 LHVLIKEAKSLCPVKSN----TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVY 331
             V++  A  +          T D + + ++       S+ +T       +P WN T  +
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEF 62

Query: 332 RDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLG 368
               L+   E  LE+T+ D + +  +E LG     + 
Sbjct: 63  ---ILDPNQENVLEITLMDANYVM-DETLGTATFTVS 95

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 84.0 bits (208), Expect = 9e-20
 Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           + + V   K+LA  D  R   DP+ K+ +           T   K+TL P +++     +
Sbjct: 7   IRLTVLCAKNLAKKDFFRL-PDPFAKIVVDGSGQC---HSTDTVKNTLDPKWNQHYDLYV 62

Query: 184 TLEDLECRTLWLSVWHSDMFGRND---FLGEVMMSLENKVFDDPSPKCYPLQERSEILDE 240
              D    ++ +SVW+     +     FLG V +     +          L        +
Sbjct: 63  GKTD----SITISVWNHKKIHKKQGAGFLGCVRLLSNA-ISRLKDTGYQRLDLCKLNPSD 117

Query: 241 LICSKGELIIGLKF 254
               +G++++ L+ 
Sbjct: 118 TDAVRGQIVVSLQT 131

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 276 LHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDV 334
           + + +  AK+L         D F K  +         H T  +K +  P+WN        
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSG---QCHSTDTVKNTLDPKWNQHYD---- 59

Query: 335 SLEELSERCLELTVWDHDRLTSNE---FLGGIRLNLGH 369
            L       + ++VW+H ++   +   FLG +RL    
Sbjct: 60  -LYVGKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNA 96

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 81.9 bits (202), Expect = 1e-18
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 21/130 (16%)

Query: 122 GALEIHVKQCKDLAPVDTKR---------QRSDPYVKVYLLPDKSKAGKRKTRVKKHTLS 172
           G L + + +   L P              Q  DPY+ V +  D+ +    +T  K+ T  
Sbjct: 29  GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVR--VGQTSTKQKTNK 84

Query: 173 PVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC---- 228
           P ++E     +T    +   L L+V+H    G + F+    +  +  +    +       
Sbjct: 85  PTYNEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGW 140

Query: 229 YPLQERSEIL 238
             L+   ++ 
Sbjct: 141 VDLEPEGKVF 150

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 20/105 (19%)

Query: 274 GSLHVLIKEAKSLCPV-----------KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTS 322
           G L V I EA  L P                +D +    +     +    +T   +++  
Sbjct: 29  GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV----DQVRVGQTSTKQKTNK 84

Query: 323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
           P +N      +V+        LEL V+    L  + F+    L  
Sbjct: 85  PTYNEEFCA-NVT----DGGHLELAVFHETPLGYDHFVANCTLQF 124

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 80.3 bits (198), Expect = 2e-18
 Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 20/128 (15%)

Query: 122 GALEIHVKQCKDLAPVDTKR----------QRSDPYVKVYLLPDKSKAGKRKTRVKKHTL 171
           G L+I + +   L P                  DPY+ + +  D S+    +T  K+ T 
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSR--IGQTATKQKTN 61

Query: 172 SPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPK--CY 229
           SP + +     +       R + L+V+H    G +DF+    +  E  + +         
Sbjct: 62  SPAWHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI 117

Query: 230 PLQERSEI 237
            L+   ++
Sbjct: 118 DLEPEGKV 125

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 21/106 (19%)

Query: 274 GSLHVLIKEAKSLCP------------VKSNTVDAFCKAYLLPDKGRASKHKTGIIKRST 321
           G L + I EA SL P             ++  +D +    +      +   +T   +++ 
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTN 61

Query: 322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
           SP W+      +   +  + R +EL V+    +  ++F+    +  
Sbjct: 62  SPAWHD-----EFVTDVCNGRKIELAVFHDAPIGYDDFVANCTIQF 102

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 79.9 bits (197), Expect = 6e-18
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 15/151 (9%)

Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
           +  L+I V   K             PYV+V +         +KT    +T SP + + L 
Sbjct: 35  KSQLQITVISAKLKENKKNWF-GPSPYVEVTV-----DGQSKKTEKCNNTNSPKWKQPLT 88

Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDP---SPKCYPLQERSEI 237
             +T        L   VW       +  LG   + +   +  +          LQ   + 
Sbjct: 89  VIVTPVS----KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD- 143

Query: 238 LDELICSKGELIIGLKFVPPEDSSLSSAKKS 268
             E   + G+L I L  +  E   +++ + +
Sbjct: 144 -KEPTETIGDLSICLDGLQLESEVVTNGETT 173

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 11/119 (9%)

Query: 252 LKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRAS 310
           L F    DS        S   K  L + +  AK     K+      + +  +        
Sbjct: 14  LYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTV-----DGQ 68

Query: 311 KHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH 369
             KT     + SP+W   +    V +  +S+  L   VW H  L S+  LG   L++  
Sbjct: 69  SKKTEKCNNTNSPKWKQPL---TVIVTPVSK--LHFRVWSHQTLKSDVLLGTAALDIYE 122

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 77.9 bits (192), Expect = 2e-17
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 28/145 (19%)

Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
              + I V   + L   D     SDPYV V +   K     ++T+     L+PV++E   
Sbjct: 16  SAKISITVVCAQGLQAKDKTGS-SDPYVTVQVGKTK-----KRTKTIYGNLNPVWEENFH 69

Query: 181 FQLTLEDLECRTLWLSVWHSD-----------MFGRNDFLGEVMMSLENKVFDDPSPKCY 229
           F+          + + V   D               +DFLG+ ++ +            Y
Sbjct: 70  FECHNSS---DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT--LSGEMDVWY 124

Query: 230 PLQERSEILDELICSKGELIIGLKF 254
            L +R+    +     G   I L  
Sbjct: 125 NLDKRT----DKSAVSGA--IRLHI 143

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 59.0 bits (143), Expect = 7e-11
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 21/122 (17%)

Query: 258 EDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGI 316
           E +   S    +S     + + +  A+ L       + D +    +       +K +T  
Sbjct: 1   EFAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQV-----GKTKKRTKT 55

Query: 317 IKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHD-----------RLTSNEFLGGIRL 365
           I  + +P W     +        S   +++ V D D           +  S++FLG   +
Sbjct: 56  IYGNLNPVWEENFHFEC----HNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTII 111

Query: 366 NL 367
            +
Sbjct: 112 EV 113

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 65.3 bits (158), Expect = 2e-11
 Identities = 15/100 (15%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 121 QGALEIHVKQCKDLAPVDTK--RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEV 178
                + V +   +            DPYV++++        +++TR   + ++PV++E 
Sbjct: 17  SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDS--RKRTRHFNNDINPVWNET 74

Query: 179 LKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
            +F   L+  +   L +++  ++    ++ LG    ++ +
Sbjct: 75  FEFI--LDPNQENVLEITLMDANYV-MDETLGTATFTVSS 111

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 51.5 bits (122), Expect = 4e-07
 Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 15/165 (9%)

Query: 252 LKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTV----DAFCKAYLLPDKG 307
           + F+ P    +   + S         V++  A  +       +    D + + ++     
Sbjct: 1   MSFIDPYQHIIVEHQYS-----HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD 55

Query: 308 RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
             S+ +T       +P WN T  +    L+   E  LE+T+ D + +  +E LG     +
Sbjct: 56  --SRKRTRHFNNDINPVWNETFEF---ILDPNQENVLEITLMDANYV-MDETLGTATFTV 109

Query: 368 GHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLE 412
              K   K       +    ++ +  +E  +             E
Sbjct: 110 SSMKVGEKKEVPFIFNQVTEMVLEMSLEVCSCPDLRFSMALCDQE 154

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 61.1 bits (147), Expect = 3e-10
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 277 HVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSL 336
            V    A+ L    +   DA+ K +         + +TG++  + +P+W   + + +V L
Sbjct: 397 VVSNFRAEHLWGDYTTATDAYLKVFF-----GGQEFRTGVVWNNNNPRWTDKMDFENVLL 451

Query: 337 EELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKH 372
                  L + VWD D    ++ LG    +   G H
Sbjct: 452 STGGP--LRVQVWDADYGWDDDLLGSCDRSPHSGFH 485

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 59.1 bits (142), Expect = 1e-09
 Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 8/108 (7%)

Query: 116 QYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVF 175
                   L +   + + L    T    +D Y+KV+    +      +T V  +  +P +
Sbjct: 388 PRQRGLAHLVVSNFRAEHLWGDYT--TATDAYLKVFFGGQE-----FRTGVVWNNNNPRW 440

Query: 176 DEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD 223
            + + F+  L       L + VW +D    +D LG    S  +   + 
Sbjct: 441 TDKMDFENVLLSTG-GPLRVQVWDADYGWDDDLLGSCDRSPHSGFHEV 487

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 56.9 bits (137), Expect = 3e-10
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 16/122 (13%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L + VK+ K     +    + + YV + +   KS      T   +    P +++   F++
Sbjct: 7   LCVGVKKAKFDGAQE----KFNTYVTLKVQNVKS-----TTIAVR-GSQPSWEQDFMFEI 56

Query: 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN-KVFDDPS-PKCYPLQERSEILDEL 241
              DL    L + VW+  +   +  +G V + L   +  ++    +   L  ++ + D  
Sbjct: 57  NRLDLG---LTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 112

Query: 242 IC 243
           IC
Sbjct: 113 IC 114

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 22/124 (17%), Positives = 49/124 (39%), Gaps = 16/124 (12%)

Query: 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
             L + VK+ K     +    + + YV + +   +S      T   +    P +++   F
Sbjct: 14  SLLCVGVKKAKFDGAQE----KFNTYVTLKVQNVES-----TTIAVR-GSQPSWEQDFMF 63

Query: 182 QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN-KVFDDPS-PKCYPLQERSEILD 239
           ++   DL    L + VW+  +   +  +G V + L   +  ++    +   L  ++ + D
Sbjct: 64  EINRLDLG---LTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMAD 119

Query: 240 ELIC 243
             IC
Sbjct: 120 SEIC 123

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 50.8 bits (121), Expect = 5e-08
 Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 19/140 (13%)

Query: 123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPV-FDEVLKF 181
           AL +H+K   +L      R R+D   KV       +     +RV ++      FDE  ++
Sbjct: 22  ALIVHLKTVSEL------RGRADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRW 70

Query: 182 QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDE- 240
            +         L + +++      N  +G   M L  KV ++       ++    ++D+ 
Sbjct: 71  PVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVL-QKVVEENR-----VEVSDTLIDDN 124

Query: 241 LICSKGELIIGLKFVPPEDS 260
               K  L + +++   + +
Sbjct: 125 NAIIKTSLSMEVRYQAADGT 144

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 9e-08
 Identities = 63/464 (13%), Positives = 135/464 (29%), Gaps = 143/464 (30%)

Query: 21  PVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNK 80
            VF++        +F     QD                     SIL+ +++         
Sbjct: 23  SVFEDAFV----DNFDCKDVQD------------------MPKSILSKEEI--------D 52

Query: 81  SLLGARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPV--- 137
            ++ ++     ++            +V+  VE  L+ NYK     I   + +  + +   
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK-TEQRQPSMMTRM 111

Query: 138 -DTKRQR----SDPYVKVYLLPDKSKAGKRKTRVK-----------------KHTLSPVF 175
              +R R    +  + K Y +       K +  +                  K  ++   
Sbjct: 112 YIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-- 168

Query: 176 DEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF----------DDPS 225
            +V         ++ +  WL+          +    V+  L+  ++          D  S
Sbjct: 169 -DVCLSYKVQCKMDFKIFWLN------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 226 PKCYPLQERSEILDELICSKG---ELIIGL----------KF-------VPPEDSSLSSA 265
                +      L  L+ SK     L++ L           F       +      ++  
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 266 KKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAF-----CKAYLLPDKGRASKH---KTGII 317
               SAA  +   L   + +L                C+   LP           +  II
Sbjct: 281 ---LSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSII 333

Query: 318 KRSTSP---QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYS 374
             S       W++   ++ V+ ++L+   +E ++   + L   E+    R      K + 
Sbjct: 334 AESIRDGLATWDN---WKHVNCDKLT-TIIESSL---NVLEPAEY----R------KMFD 376

Query: 375 KLVDWMDSSGKEI------LLWQQMMER-PNFWVESCIPLRSSL 411
           +L  +  S+   I      L+W  +++      V      + SL
Sbjct: 377 RLSVFPPSA--HIPTILLSLIWFDVIKSDVMVVVNKLH--KYSL 416

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 51.1 bits (121), Expect = 4e-07
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 119 YKQGALEIHVKQCKDLAPVDT-KRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFD 176
           ++   L + +   + L  V+  K    DP V V +       G R+T V   +  +P +D
Sbjct: 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 553

Query: 177 EVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
              +F++T+ DL    +   V   D   +NDF+G+  +   +
Sbjct: 554 MEFEFEVTVPDLA--LVRFMVEDYDSSSKNDFIGQSTIPWNS 593

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 48.4 bits (114), Expect = 3e-06
 Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 8/108 (7%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L++ + + ++L P      +   Y ++  L D   A            +  + E  +F  
Sbjct: 13  LKLWIIEARELPP------KKRYYCELC-LDDMLYARTTSKPRSASGDTVFWGEHFEFNN 65

Query: 184 TLEDLECR-TLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYP 230
                  R  L+          +  ++G V + +        + + YP
Sbjct: 66  LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYP 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	419
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.97
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.97
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.96
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.95
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.95
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.95
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.93
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.92
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.92
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.92
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.91
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.91
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.91
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.91
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.91
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.91
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.91
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.91
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.91
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.9
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.9
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.9
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.9
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.9
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.9
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.9
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.9
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.89
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.89
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.89
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.89
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.89
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.88
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.88
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.88
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.88
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.88
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.87
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.87
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.87
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.87
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.87
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.87
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.87
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.87
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.86
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.86
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.86
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.85
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.85
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.84
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.84
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.84
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.84
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.82
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.82
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.8
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.79
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.78
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.78
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.75
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.74
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.74
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.72
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.72
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.71
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.7
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.69
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.69
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.69
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.63
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.62
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.6
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.6
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.6
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.57
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.55
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.55
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.55
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.52
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.51
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.51
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.49
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.48
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.44
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.32
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.26
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.24
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.23
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.21
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.2
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.19
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.03
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.98
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.65
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.61
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	95.76
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	95.72
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	95.66
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	95.29
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	95.25
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	94.13
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	94.05
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	93.5
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	93.05
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	92.39
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	90.84

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=2.1e-50  Score=374.24  Aligned_cols=270  Identities=29%  Similarity=0.525  Sum_probs=243.1

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      .|+|.+++.|.+..+.|.|+|++|++|+.++.. +.+||||++++.++..  .+++|++++++.||+|||+|.|.+..++
T Consensus         5 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~-~~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~wne~f~f~v~~~~   81 (284)
T 2r83_A            5 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPYSE   81 (284)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEECCCCCSSS-SSCCEEEEEEEETCTT--SCEECCCCCSCSSCEEEEEEEECCCGGG
T ss_pred             eeEEEEEEEEECCCCEEEEEEEEeeCCCCCCCC-CCCCeEEEEEEEcCCC--ceEeCCcccCCCCCeeCceEEEEechHH
Confidence            799999999999999999999999999999887 8999999999987653  3689999999999999999999998877


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCccccccc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSSAKK  267 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~~~~  267 (419)
                      +....|.|+|||++.++++++||++.++|.++........|++|.+....   .....|+|.+++.|.|.          
T Consensus        82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~---~~~~~G~i~l~l~~~p~----------  148 (284)
T 2r83_A           82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKE---EQEKLGDICFSLRYVPT----------  148 (284)
T ss_dssp             CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSC---CCCCCCEEEEEEEEETT----------
T ss_pred             hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccc---cccccccEEEEEEecCc----------
Confidence            77789999999999999999999999999998877778899999875432   12356999999999987          


Q ss_pred             cCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEE
Q psy12482        268 SSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLEL  346 (419)
Q Consensus       268 ~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i  346 (419)
                           .+.|.|.|++|+||+.++.+ .+||||+|.+.+++....+++|.++++++||+|||.|.|. ++.++++...|.|
T Consensus       149 -----~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~l~i  222 (284)
T 2r83_A          149 -----AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVV  222 (284)
T ss_dssp             -----TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CCTTTGGGEEEEE
T ss_pred             -----CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEe-CCHHHhCceEEEE
Confidence                 79999999999999999987 8999999999865545567899999999999999999996 8888888888999


Q ss_pred             EEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCCCC
Q psy12482        347 TVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLE  412 (419)
Q Consensus       347 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~~~  412 (419)
                      +|||++.++++++||++.|+++.             .+.+..||.+|+.+|++++++||+|++..+
T Consensus       223 ~V~d~d~~~~~~~iG~~~i~l~~-------------~~~~~~~w~~~~~~~~~~~~~W~~L~~~~~  275 (284)
T 2r83_A          223 TVLDYDKIGKNDAIGKVFVGYNS-------------TGAELRHWSDMLANPRRPIAQWHTLQVEEE  275 (284)
T ss_dssp             EEEECCSSSCCCEEEEEEEETTC-------------CHHHHHHHHHHHHSTTSCEEEEEECBCHHH
T ss_pred             EEEeCCCCCCCcEEEEEEECCCC-------------CCcHHHHHHHHHHCCCCchheeeecCCccc
Confidence            99999999999999999999954             578899999999999999999999988654

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=1.3e-49  Score=370.28  Aligned_cols=270  Identities=31%  Similarity=0.492  Sum_probs=237.0

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      .+|+|.+++.|.+..+.|.|+|++|++|+.++.. |.+||||++++.+++.  .+++|+++++++||+|||+|.|.+..+
T Consensus         5 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~-g~~dPyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~   81 (296)
T 1dqv_A            5 PCGRISFALRYLYGSDQLVVRILQALDLPAKDSN-GFSDPYVKIYLLPDRK--KKFQTKVHRKTLNPIFNETFQFSVPLA   81 (296)
T ss_dssp             SSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTT-SCCCEEEEEECTTSTT--SCEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             eeeEEEEEEEEeCCCCEEEEEEEEeECCCCcCCC-CCcCeEEEEEEEcCCC--eeEeCCccCCCCCCcEeeEEEEEecHH
Confidence            3799999999999999999999999999999987 8999999999987664  478999999999999999999999888


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEe-Ccccc-cCCCCCceecCccccchhhhhhccccceEEEEEEeCCCCCcccc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMS-LENKV-FDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPEDSSLSS  264 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~-l~~~~-~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~~~~~~  264 (419)
                      ++....|.|+|||++.++++++||++.++ +.++. .......|++|.+....    ....|+|.++++|.|.       
T Consensus        82 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~----~~~~G~i~vsl~y~~~-------  150 (296)
T 1dqv_A           82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSE----KADLGELNFSLCYLPT-------  150 (296)
T ss_dssp             GGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSC----CSCCCEEEEEEEEETT-------
T ss_pred             HhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccccccc----ccccceEEEEEEeccc-------
Confidence            88778999999999999999999999996 44433 23456789999765432    2356999999999987       


Q ss_pred             ccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCe
Q psy12482        265 AKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERC  343 (419)
Q Consensus       265 ~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~  343 (419)
                              .+.|.|.|++|+||++++.. .+||||++.+.+++....+++|.++++++||+|||.|.|. ++..++....
T Consensus       151 --------~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l~~~~  221 (296)
T 1dqv_A          151 --------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD-VAPESVENVG  221 (296)
T ss_dssp             --------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCC-CCSGGGGSCC
T ss_pred             --------cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEE-cCHHHccCcE
Confidence                    79999999999999999987 8899999999865555678999999999999999999996 8887887778


Q ss_pred             EEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCch-hHHHHHHHHhCCCceEEeeeeccCCCC
Q psy12482        344 LELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGK-EILLWQQMMERPNFWVESCIPLRSSLE  412 (419)
Q Consensus       344 l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~-~~~~W~~l~~~p~~~i~~w~~l~~~~~  412 (419)
                      |.|+|||++.++++++||.+.|++..             .+. +..||++|+.+|++++++||+|++...
T Consensus       222 L~i~V~d~d~~~~~~~iG~~~i~l~~-------------~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~~  278 (296)
T 1dqv_A          222 LSIAVVDYDCIGHNEVIGVCRVGPEA-------------ADPHGREHWAEMLANPRKPVEHWHQLVEEKT  278 (296)
T ss_dssp             CCCEEEECCSSSCCEEEEECCCSSCT-------------TCHHHHHHHHTSSSSSSSCSCSCCCCBBCC-
T ss_pred             EEEEEEeCCCCCCCceEEEEEECCcc-------------CCchhHHHHHHHHhCCCCceeEeeeccCccc
Confidence            99999999999999999999999965             243 789999999999999999999987644

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.97  E-value=1.7e-30  Score=240.41  Aligned_cols=212  Identities=25%  Similarity=0.369  Sum_probs=164.5

Q ss_pred             ccCcceeeecccCCCCcccceeeeceeeceeeccccccccCCCCcCcccccccCccCCcccccccccccccCCccccccc
Q psy12482          6 KAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSILTDDDVTERLPHHNKSLLGA   85 (419)
Q Consensus         6 k~~k~kT~v~~~t~nP~wnE~f~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~   85 (419)
                      +++++||+++++|+||+|||+|.|.+... .+. ...+.+.|+|.+.+++++++|.+.+.+.+......  ...|..+..
T Consensus        52 ~~~~~~T~~~~~~~nP~wne~f~f~v~~~-~~~-~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~--~~~w~~L~~  127 (284)
T 2r83_A           52 KKKKFETKVHRKTLNPVFNEQFTFKVPYS-ELA-GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV--TEEWRDLQS  127 (284)
T ss_dssp             TTSCEECCCCCSCSSCEEEEEEEECCCGG-GCT-TCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSC--EEEEEECBC
T ss_pred             CCceEeCCcccCCCCCeeCceEEEEechH-HhC-cCEEEEEEEECCCCCCCceeEEEEEcchhcccCCc--ceeEEEeec
Confidence            34688999999999999999999953221 121 22344778999988888999998776665543221  112222211


Q ss_pred             ccCCccccccCCCCCCCCceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecc
Q psy12482         86 RSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTR  165 (419)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~  165 (419)
                      ...              ......|+|.+++.|.+..+.|.|.|++|++|+.++.. +.+||||++++.+++....+++|+
T Consensus       128 ~~~--------------~~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d~~-~~~dpyv~v~~~~~~~~~~~~kT~  192 (284)
T 2r83_A          128 AEK--------------EEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTT  192 (284)
T ss_dssp             CSS--------------CCCCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTT-SCCCEEEEEEEEETTEEEEEEECC
T ss_pred             ccc--------------ccccccccEEEEEEecCcCCceEEEEEEeECCCCcCCC-CCcCeEEEEEEEeCCcEeeeeccc
Confidence            100              01123699999999999999999999999999999987 889999999998766544578999


Q ss_pred             cccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCccc------------ccCCCCCceecCcc
Q psy12482        166 VKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK------------VFDDPSPKCYPLQE  233 (419)
Q Consensus       166 ~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~------------~~~~~~~~w~~L~~  233 (419)
                      +++++.||+|||+|.|.++.+++....|.|+|||++.++++++||++.+++..+            ....+.++||+|.+
T Consensus       193 v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          193 IKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             CCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             eecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            999999999999999999888888889999999999999999999999999763            22345678999987


Q ss_pred             ccc
Q psy12482        234 RSE  236 (419)
Q Consensus       234 ~~~  236 (419)
                      ...
T Consensus       273 ~~~  275 (284)
T 2r83_A          273 EEE  275 (284)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            644

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.97  E-value=6.7e-31  Score=244.14  Aligned_cols=211  Identities=26%  Similarity=0.335  Sum_probs=161.5

Q ss_pred             ccCcceeeecccCCCCcccceeeeceeeceeeccccccccCCCCcCcccccccCccCCcc-ccc-ccccccccCCccccc
Q psy12482          6 KAGKRKTRVKKHTLSPVFDEVLKTAGERDFSVSSQQDKQASPDDLSAHSEAGLNKSVSSI-LTD-DDVTERLPHHNKSLL   83 (419)
Q Consensus         6 k~~k~kT~v~~~t~nP~wnE~f~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~~~-~~~~~~~~~~~~~~~   83 (419)
                      .++++||+++++|+||+|||+|.|.+.. ..+.. ..+.+.|+|.+.+++++++|++.+. +.. .+...  ....|..+
T Consensus        53 ~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~l~~-~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~--~~~~w~~L  128 (296)
T 1dqv_A           53 RKKKFQTKVHRKTLNPIFNETFQFSVPL-AELAQ-RKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP--DRPLWRDI  128 (296)
T ss_dssp             TTSCEECCCCCSCSSCEEEEEEEEECCG-GGGSS-CCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCS--SCCCCEEC
T ss_pred             CCeeEeCCccCCCCCCcEeeEEEEEecH-HHhcC-CEEEEEEEEcCCCCCCceEEEEEeccccccccCCc--cceeeecc
Confidence            4578999999999999999999995321 12222 2344778999999999999997753 111 11111  01112212


Q ss_pred             ccccCCccccccCCCCCCCCceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeee
Q psy12482         84 GARSDSMASVYSGAGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRK  163 (419)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~k  163 (419)
                      ....               +.....|+|.+++.|.+..+.|.|.|++|++|+.++.. |.+||||++++.+++....+++
T Consensus       129 ~~~~---------------~~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~d~~-g~~Dpyv~v~l~~~~~~~~~~k  192 (296)
T 1dqv_A          129 LEGG---------------SEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLT-GFSDPYVKASLISEGRRLKKRK  192 (296)
T ss_dssp             BCCS---------------SCCSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSS-SCCCEEEEECCCTTCCTTSCEE
T ss_pred             cccc---------------ccccccceEEEEEEeccccceeEEEEEEeecCCccCCC-CCCCcEEEEEEEeCCcCcccee
Confidence            1100               01122699999999999999999999999999999987 8899999999987766566889


Q ss_pred             cccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccc-------------cCCCCCceec
Q psy12482        164 TRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKV-------------FDDPSPKCYP  230 (419)
Q Consensus       164 T~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~-------------~~~~~~~w~~  230 (419)
                      |++++++.||+|||+|.|.++.+++....|.|+|||++.++++++||++.+++.++.             ...+..+|++
T Consensus       193 T~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~  272 (296)
T 1dqv_A          193 TSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQ  272 (296)
T ss_dssp             CCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCC
T ss_pred             cceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeee
Confidence            999999999999999999998888877799999999999999999999999998753             2446778888


Q ss_pred             Cccccc
Q psy12482        231 LQERSE  236 (419)
Q Consensus       231 L~~~~~  236 (419)
                      |.+...
T Consensus       273 L~~~~~  278 (296)
T 1dqv_A          273 LVEEKT  278 (296)
T ss_dssp             CBBCC-
T ss_pred             ccCccc
Confidence            876544

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.96  E-value=6.1e-29  Score=204.38  Aligned_cols=136  Identities=30%  Similarity=0.504  Sum_probs=125.0

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|.+++.|.+.               .+.|.|+|++|+||+.++.+ .+||||++.+.+.+....+++|++++++.||
T Consensus         2 ~G~l~~sl~y~~~---------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP   66 (138)
T 3n5a_A            2 RGELLLSLCYNPS---------------ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNP   66 (138)
T ss_dssp             CCEEEEEEEEETT---------------TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSC
T ss_pred             CcEEEEEEEEcCC---------------CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCC
Confidence            5999999999988               79999999999999999888 8999999999876555678999999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES  403 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~  403 (419)
                      +|||.|.|. ++..++....|.|+|||++.++++++||++.|++++             .+.+.+||++|+.+|++++++
T Consensus        67 ~wne~f~f~-v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~-------------~~~~~~~W~~l~~~~~~~~~~  132 (138)
T 3n5a_A           67 IFNESFAFD-IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKS-------------GPGEVKHWKDMIARPRQPVAQ  132 (138)
T ss_dssp             EEEEEEEEE-CCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSS-------------CHHHHHHHHHHHHSTTCCEEE
T ss_pred             cCcceEEEE-CChhhcCceEEEEEEEECCCCCCCcEEEEEEEcccc-------------CChHHHHHHHHHhCCCCeEEE
Confidence            999999996 888888778899999999999999999999999954             577899999999999999999


Q ss_pred             eeeccC
Q psy12482        404 CIPLRS  409 (419)
Q Consensus       404 w~~l~~  409 (419)
                      ||+|+|
T Consensus       133 Wh~L~p  138 (138)
T 3n5a_A          133 WHQLKA  138 (138)
T ss_dssp             EEECBC
T ss_pred             EeecCC
Confidence            999986

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.95  E-value=5e-28  Score=202.46  Aligned_cols=138  Identities=25%  Similarity=0.378  Sum_probs=119.4

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST  321 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~  321 (419)
                      ...|+|.+++.|.+.               .+.|.|+|++|+||+.++.+ .+||||+|.+.+++....+++|+++++++
T Consensus        14 ~~~G~l~~~l~y~~~---------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~   78 (153)
T 1w15_A           14 SGRGELLVSLCYQST---------------TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTP   78 (153)
T ss_dssp             --CCEEEEEEEEETT---------------TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCS
T ss_pred             ccccEEEEEEEEcCC---------------CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCC
Confidence            456999999999998               79999999999999999877 89999999998754444578999999999


Q ss_pred             CCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceE
Q psy12482        322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWV  401 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i  401 (419)
                      ||+|||+|.|. ++..++....|.|+|||++.++++++||++.|+++.             .+....+|++|+.+|++++
T Consensus        79 nP~wne~f~f~-v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~-------------~~~~~~~W~~l~~~p~~~~  144 (153)
T 1w15_A           79 NAVFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA-------------EGSGGGHWKEICDFPRRQI  144 (153)
T ss_dssp             SEEEEEEEEEE-CCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC-------------CSHHHHHHHHHHHSTTCCE
T ss_pred             CCeecceEEEE-CCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC-------------CchHHHHHHHHHhCCCCee
Confidence            99999999996 877777777899999999999999999999999954             5678999999999999999


Q ss_pred             EeeeeccC
Q psy12482        402 ESCIPLRS  409 (419)
Q Consensus       402 ~~w~~l~~  409 (419)
                      ++||+|++
T Consensus       145 ~~Wh~L~~  152 (153)
T 1w15_A          145 AKWHMLCD  152 (153)
T ss_dssp             EEEEECBC
T ss_pred             eecccccc
Confidence            99999986

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.95  E-value=1.7e-27  Score=200.50  Aligned_cols=143  Identities=27%  Similarity=0.463  Sum_probs=128.7

Q ss_pred             hccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482        242 ICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRS  320 (419)
Q Consensus       242 ~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t  320 (419)
                      ....|+|.+++.|.+.               .+.|.|+|++|+||+.++.+ .+||||+|.+.+++....+++|++++++
T Consensus         8 ~~~~G~l~~~l~y~~~---------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t   72 (159)
T 1tjx_A            8 LEKLGDICFSLRYVPT---------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT   72 (159)
T ss_dssp             GGCCCEEEEEEEEETT---------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC
T ss_pred             cCcCCeEEEEEEEcCC---------------CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCC
Confidence            3467999999999998               79999999999999999987 8999999999865444567899999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCce
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFW  400 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~  400 (419)
                      +||+|||.|.|. ++..++....|.|+|||++.++++++||.+.|++..             .|.+.+||.+|+.+|+..
T Consensus        73 ~nP~wne~f~f~-v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~-------------~~~~~~~w~~l~~~~~~~  138 (159)
T 1tjx_A           73 LNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS-------------TGAELRHWSDMLANPRRP  138 (159)
T ss_dssp             SSCEEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTC-------------CHHHHHHHHHHHHSTTCC
T ss_pred             CCCcccceEEEE-cCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCC-------------CCcHHHHHHHHHHCCCCe
Confidence            999999999996 888788778899999999999999999999999964             478899999999999999


Q ss_pred             EEeeeeccCCCCc
Q psy12482        401 VESCIPLRSSLEF  413 (419)
Q Consensus       401 i~~w~~l~~~~~~  413 (419)
                      +++||+|.+..++
T Consensus       139 ~~~W~~L~~~~~~  151 (159)
T 1tjx_A          139 IAQWHTLQVEEEV  151 (159)
T ss_dssp             EEEEEECBCHHHH
T ss_pred             eeeEEECcCcccc
Confidence            9999999886554

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.95  E-value=2.2e-27  Score=201.22  Aligned_cols=142  Identities=28%  Similarity=0.566  Sum_probs=125.2

Q ss_pred             hccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482        242 ICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRS  320 (419)
Q Consensus       242 ~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t  320 (419)
                      ....|+|.+++.|.+.               .+.|.|+|++|+||+.++.+ .+||||+|.+.++.+...+++|++++++
T Consensus        20 ~~~~G~l~~~l~y~~~---------------~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t   84 (166)
T 2cm5_A           20 IEERGKILVSLMYSTQ---------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKT   84 (166)
T ss_dssp             CCCCCEEEEEEEEETT---------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSC
T ss_pred             cCccceEEEEEEEECC---------------CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCC
Confidence            3567999999999987               79999999999999999987 8999999999876555678999999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCce
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFW  400 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~  400 (419)
                      +||+|||.|.|. ++..++....|.|+|||++.++++++||.+.|++..             -+....+|++|+..|++.
T Consensus        85 ~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~-------------~~~~~~~W~~l~~~~~~~  150 (166)
T 2cm5_A           85 LNPEFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA-------------KGERLKHWYECLKNKDKK  150 (166)
T ss_dssp             SSCEEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTC-------------CHHHHHHHHHHHHCTTCC
T ss_pred             CCCcccceEEEE-cchHhcCCCEEEEEEEECCCCCCCcEEEeEEEeccc-------------CCchhHHHHHHHhCCCCc
Confidence            999999999997 877778778899999999999999999999999965             366889999999999999


Q ss_pred             EEeeeeccCCCC
Q psy12482        401 VESCIPLRSSLE  412 (419)
Q Consensus       401 i~~w~~l~~~~~  412 (419)
                      +++||+|++...
T Consensus       151 ~~~Wh~L~~~~~  162 (166)
T 2cm5_A          151 IERWHQLQNENH  162 (166)
T ss_dssp             EEEEEECBC---
T ss_pred             ceEeeECCCccc
Confidence            999999987644

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=186.26  Aligned_cols=134  Identities=43%  Similarity=0.816  Sum_probs=118.6

Q ss_pred             ceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEc
Q psy12482        104 SVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL  183 (419)
Q Consensus       104 ~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v  183 (419)
                      +...+|+|.+++.|.+..+.|.|+|++|++|+.++...+.+||||++++.+++....+++|++++++.||+|||+|.|.+
T Consensus         5 ~~~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v   84 (148)
T 3fdw_A            5 NIFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEI   84 (148)
T ss_dssp             -CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEEC
T ss_pred             CCccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEe
Confidence            34558999999999999999999999999999888322889999999999877656689999999999999999999999


Q ss_pred             ccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccch
Q psy12482        184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEI  237 (419)
Q Consensus       184 ~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~  237 (419)
                      +..++....|.|+|||++.++++++||++.++|.++........|++|.++...
T Consensus        85 ~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~  138 (148)
T 3fdw_A           85 PESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA  138 (148)
T ss_dssp             CSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC---
T ss_pred             ChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCcccc
Confidence            888887889999999999999999999999999999888888899999887554

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.92  E-value=2.3e-25  Score=185.65  Aligned_cols=126  Identities=23%  Similarity=0.297  Sum_probs=112.2

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCC-CCCCeeecccccCCCCceeccEEEEEccc
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK-SKAGKRKTRVKKHTLSPVFDEVLKFQLTL  185 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~-~~~~~~kT~~~~~t~nP~wne~f~f~v~~  185 (419)
                      ..|+|.+++.|.+..+.|+|.|++|+||++++.. |.+||||++++.+.. .+..++||+++++|+||+|||+|.|.++.
T Consensus        28 ~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~-g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~  106 (155)
T 2z0u_A           28 GATRIQIALKYDEKNKQFAILIIQLSNLSALLQQ-QDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY  106 (155)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCS-CCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCH
T ss_pred             CcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccC-CCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCH
Confidence            3799999999999999999999999999999987 899999999998632 22236899999999999999999999988


Q ss_pred             CcccccEEEEEEEecCCCCCCceeEEEEEeCccccc-CCCCCceecCcc
Q psy12482        186 EDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVF-DDPSPKCYPLQE  233 (419)
Q Consensus       186 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~-~~~~~~w~~L~~  233 (419)
                      .++....|.|+|||++.++++++||++.++|.++.. .....+||+|.+
T Consensus       107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            877778999999999999999999999999999853 556789999863

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=2.5e-24  Score=177.56  Aligned_cols=128  Identities=34%  Similarity=0.617  Sum_probs=115.1

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      ..|+|.+++.|.+..+.|.|+|++|++|+.++.. + +||||++++.+++....+++|++++++.||+|||+|.|.++..
T Consensus         9 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~-g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   86 (142)
T 2dmg_A            9 PLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSED-G-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP   86 (142)
T ss_dssp             SSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTT-C-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHH
T ss_pred             CcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCC-C-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHH
Confidence            3799999999999999999999999999999987 7 9999999999876655689999999999999999999999877


Q ss_pred             cccccEEEEEEEecCCCCC--CceeEEEEEeCcccccCCCCCceecCccccc
Q psy12482        187 DLECRTLWLSVWHSDMFGR--NDFLGEVMMSLENKVFDDPSPKCYPLQERSE  236 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~--~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~  236 (419)
                      ++....|.|+|||++.+++  +++||++.++|.++.......+|++|.+...
T Consensus        87 ~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~  138 (142)
T 2dmg_A           87 EVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG  138 (142)
T ss_dssp             HHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred             HhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence            7777799999999998764  5799999999999887778899999987643

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.92  E-value=3.5e-24  Score=173.67  Aligned_cols=123  Identities=30%  Similarity=0.627  Sum_probs=106.4

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cccC
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLE  186 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~  186 (419)
                      .|+|.+++.|.+..+.|.|+|++|++|+.++.. +.+||||++++.+++....+++|++++++.||+|||+|.|. ++.+
T Consensus         4 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~-~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   82 (129)
T 2bwq_A            4 SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDG-RPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR   82 (129)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCTTS-CCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred             eEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCC-CCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence            799999999999999999999999999999887 88999999999877655668999999999999999999999 4556


Q ss_pred             cccccEEEEEEEecCCCCC--CceeEEEEEeCcccccCCCCCceecCc
Q psy12482        187 DLECRTLWLSVWHSDMFGR--NDFLGEVMMSLENKVFDDPSPKCYPLQ  232 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~--~~~iG~~~~~l~~~~~~~~~~~w~~L~  232 (419)
                      ++....|.|+|||++..++  +++||++.++|.++.... ..+||+|+
T Consensus        83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           83 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence            6677799999999999887  999999999999976644 78899984

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.91  E-value=3.9e-24  Score=178.44  Aligned_cols=125  Identities=33%  Similarity=0.620  Sum_probs=114.2

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      ..|+|.+++.|.+..+.|+|+|++|++|+..+.. +.+||||++++.+++.  .+++|++++++.||+|||+|.|.+...
T Consensus        27 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~  103 (152)
T 1rsy_A           27 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPYS  103 (152)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTT-SCCCEEEEEEEETTCC--SCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred             CceEEEEEEEEeCCCCEEEEEEEEeECCCCccCC-CCcCeEEEEEEEcCCC--ceEeccccCCCCCCcCcccEEEeecHH
Confidence            3799999999999999999999999999999887 8899999999987653  478999999999999999999998877


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      ++....|.|+|||++.++++++||++.++|.++..+....+|++|.+.
T Consensus       104 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  151 (152)
T 1rsy_A          104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA  151 (152)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBCC
T ss_pred             HcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCCC
Confidence            776779999999999999999999999999998777788899999764

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.91  E-value=3.1e-24  Score=177.23  Aligned_cols=123  Identities=33%  Similarity=0.637  Sum_probs=113.8

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      .|+|.+++.|.+..+.|.|+|++|++|+..+.. +.+||||++++.+++.  .+++|++++++.||+|||+|.|.+...+
T Consensus        20 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~   96 (143)
T 3f04_A           20 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPYSE   96 (143)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEECCCCBGGG-BCCCEEEEEEEESCCS--CCEECCCCCSCSSCEEEEEEEECCCHHH
T ss_pred             eEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCC-CCcCcEEEEEEECCCC--ccEECccCcCCCCCcCcCeEEEeecHhh
Confidence            799999999999999999999999999999876 8899999999987664  3789999999999999999999998877


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      +....|.|+|||++.++++++||++.++|.++.......+|++|++
T Consensus        97 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A           97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             cCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            7778999999999999999999999999999988888899999976

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=5.9e-24  Score=175.04  Aligned_cols=127  Identities=32%  Similarity=0.563  Sum_probs=113.6

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEc-cc
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL-TL  185 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v-~~  185 (419)
                      .+|+|.+++.|.+..+.|+|+|++|++|+..+.. +.+||||++++.+++.  .+++|++++++.||+|||+|.|.+ +.
T Consensus        11 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~~   87 (141)
T 2d8k_A           11 NLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFS-GTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPY   87 (141)
T ss_dssp             CCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSS-SCCCEEEEEEEESCCS--SEEECCCCTTCSSCCCCEEEEECSCCH
T ss_pred             eeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCC-CCCCcEEEEEEECCCC--ccEeCceEcCCCCCccccEEEECccCH
Confidence            3799999999999999999999999999999877 8899999999987653  478999999999999999999984 54


Q ss_pred             CcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccc
Q psy12482        186 EDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSE  236 (419)
Q Consensus       186 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~  236 (419)
                      +++....|.|+|||++.++++++||++.++|.++........|++|.+...
T Consensus        88 ~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~  138 (141)
T 2d8k_A           88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGP  138 (141)
T ss_dssp             HHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECCC
T ss_pred             HHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCCC
Confidence            556667999999999999999999999999999887777889999987643

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.91  E-value=1.1e-23  Score=172.59  Aligned_cols=124  Identities=20%  Similarity=0.284  Sum_probs=110.7

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      ..|+|.+++.|....+.|+|+|++|++   ++.. |.+||||++++.++.. ..+++|+++++++||+|||+|.|.++..
T Consensus        11 ~~G~l~~sl~y~~~~~~L~V~v~~a~~---~d~~-g~sDPyv~v~l~~~~~-~~~~kT~v~~~tlnP~wnE~f~f~v~~~   85 (138)
T 1wfm_A           11 QAPKLHYCLDYDCQKAELFVTRLEAVT---SNHD-GGCDCYVQGSVANRTG-SVEAQTALKKRQLHTTWEEGLVLPLAEE   85 (138)
T ss_dssp             SCCEEEEEEEEETTTTEEEEEEEEEEC---CCCS-SCCCEEEEEEEEETTE-EEEEECCCCCCCSSEECSSCEEEECCTT
T ss_pred             cceEEEEEEEEeCCCCEEEEEEEEEEc---CCCC-CCcceEEEEEEEcCCC-cccEecccCcCCCCCcCCceEEEEecHH
Confidence            379999999999999999999999993   5665 8899999999986422 2368999999999999999999999888


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      ++....|.|+|||++.++++++||++.++|.++.......+|++|.+..
T Consensus        86 ~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~  134 (138)
T 1wfm_A           86 ELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             SSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             HcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence            8888899999999999999999999999999988777889999998754

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.91  E-value=1.8e-23  Score=177.09  Aligned_cols=113  Identities=35%  Similarity=0.637  Sum_probs=102.6

Q ss_pred             eeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc
Q psy12482        106 IVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL  185 (419)
Q Consensus       106 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~  185 (419)
                      ...|+|.+++.|.+..+.|.|+|++|++|+..+.. |.+||||++++.++.....+++|+++++++||+|||+|.|.+..
T Consensus        21 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   99 (166)
T 2cm5_A           21 EERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDAN-GYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH   99 (166)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTT-SCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred             CccceEEEEEEEECCCCEEEEEEEEeECCCCccCC-CCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcch
Confidence            45899999999999999999999999999999887 89999999999876655568999999999999999999999988


Q ss_pred             CcccccEEEEEEEecCCCCCCceeEEEEEeCccc
Q psy12482        186 EDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK  219 (419)
Q Consensus       186 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~  219 (419)
                      .++....|.|+|||++.++++++||++.+++.++
T Consensus       100 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~  133 (166)
T 2cm5_A          100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK  133 (166)
T ss_dssp             GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred             HhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence            7777789999999999999999999999999874

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=1e-23  Score=174.92  Aligned_cols=128  Identities=30%  Similarity=0.477  Sum_probs=112.9

Q ss_pred             eeeeEEEEEEEEEccCCEEEEEEEeecCCCCC-CCC-----CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEE
Q psy12482        106 IVKGEVEFGLQYNYKQGALEIHVKQCKDLAPV-DTK-----RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVL  179 (419)
Q Consensus       106 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~-~~~-----~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f  179 (419)
                      ...|+|.+++.|.+..+.|.|+|++|++|+.. +..     .+.+||||+|++.+++.  .+++|++++++.||+|||+|
T Consensus        10 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f   87 (147)
T 2enp_A           10 YQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQK--NSKQTGVKRKTQKPVFEERY   87 (147)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCS--SCEECCCCCSCSSCCCCBCC
T ss_pred             CcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCC--cceEeecccCCCCCeEeeeE
Confidence            34899999999999999999999999999984 432     15799999999997653  37899999999999999999


Q ss_pred             EEEcccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        180 KFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       180 ~f~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      .|.+...++....|.|+|||++.++++++||++.++|.++........|+.|.+..
T Consensus        88 ~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~  143 (147)
T 2enp_A           88 TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSG  143 (147)
T ss_dssp             EECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCCC
T ss_pred             EEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecCC
Confidence            99988777767799999999999999999999999999988777778899998764

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.91  E-value=7.3e-24  Score=173.90  Aligned_cols=122  Identities=29%  Similarity=0.525  Sum_probs=106.8

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|.+++.|.+..+.|.|.|++|++|+..+.. |.+||||++++.+++....+++|++++++.||+|||+|.|.++..+
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~   80 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIG-GTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK   80 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTT-TBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGG
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCC-CCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhh
Confidence            699999999999999999999999999999886 8899999999986654455789999999999999999999998888


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQ  232 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~  232 (419)
                      +....|.|+|||++.++++++||++.+++.++.  .+..+|++|.
T Consensus        81 l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~  123 (138)
T 3n5a_A           81 LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMI  123 (138)
T ss_dssp             GGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHH
T ss_pred             cCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHH
Confidence            877899999999999999999999999998642  2234455543

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.91  E-value=1.3e-23  Score=176.72  Aligned_cols=129  Identities=29%  Similarity=0.513  Sum_probs=113.9

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      ..|+|.+++.|.+..+.|.|+|++|++|+..+.. |.+||||++++.+++....+++|++++++.||+|||+|.|.++..
T Consensus        10 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   88 (159)
T 1tjx_A           10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE   88 (159)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTT-SCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred             cCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCC-CCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHH
Confidence            4799999999999999999999999999999987 889999999998765444578999999999999999999999888


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCccc------------ccCCCCCceecCccccc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK------------VFDDPSPKCYPLQERSE  236 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~------------~~~~~~~~w~~L~~~~~  236 (419)
                      ++....|.|+|||++.++++++||++.|++..+            ....+...||+|.+...
T Consensus        89 ~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~~  150 (159)
T 1tjx_A           89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEE  150 (159)
T ss_dssp             GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHHH
T ss_pred             HhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCccc
Confidence            877789999999999999999999999999853            22456688999987654

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.91  E-value=8.2e-24  Score=174.26  Aligned_cols=128  Identities=28%  Similarity=0.586  Sum_probs=113.8

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-ccc
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTL  185 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~  185 (419)
                      ..|+|.+++.|.+..+.|.|+|++|++|+.++.. +.+||||++++.+++....+++|++++++.||+|||+|.|. +..
T Consensus         6 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~   84 (141)
T 1v27_A            6 SGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDG-RPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR   84 (141)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSS-CCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCT
T ss_pred             cccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCC-CCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCH
Confidence            3799999999999999999999999999999987 88999999999876655668999999999999999999999 566


Q ss_pred             CcccccEEEEEEEecCCCCC--CceeEEEEEeCcccccCCCCCceecCccccc
Q psy12482        186 EDLECRTLWLSVWHSDMFGR--NDFLGEVMMSLENKVFDDPSPKCYPLQERSE  236 (419)
Q Consensus       186 ~~l~~~~l~i~v~d~~~~~~--~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~  236 (419)
                      +++....|.|+|||++.+++  +++||++.++|.++... ...+||+|.+...
T Consensus        85 ~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~-~~~~W~~L~~~~~  136 (141)
T 1v27_A           85 REFRERMLEITLWDQARVREEESEFLGEILIELETALLD-DEPHWYKLQTHDS  136 (141)
T ss_dssp             TGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCS-SEEEEEECBCCSS
T ss_pred             HHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCC-CCCceEECccccc
Confidence            67777899999999999887  99999999999997654 3789999987643

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.90  E-value=1.6e-23  Score=170.58  Aligned_cols=124  Identities=35%  Similarity=0.581  Sum_probs=109.2

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cccCc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLED  187 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~~  187 (419)
                      |.+-+.+.|....+.|.|.|++|++|+. +.. +.+||||++++.+++....+++|+++++++||+|||+|.|. ++.++
T Consensus         7 ~~~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~-g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~   84 (134)
T 2b3r_A            7 GSGAVKLSVSYRNGTLFIMVMHIKDLVT-EDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKET   84 (134)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECCCC-TTS-CCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHH
T ss_pred             ccEEEEEEEeecCCEEEEEEEEeeCCCC-CCC-CCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHH
Confidence            5555667777788999999999999997 555 88999999999887655668999999999999999999999 88777


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      +....|.|+|||++.++++++||++.++|.++........|++|.+.
T Consensus        85 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~  131 (134)
T 2b3r_A           85 LRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA  131 (134)
T ss_dssp             HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred             hCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence            77789999999999999999999999999998877788899999875

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.90  E-value=1.5e-23  Score=172.95  Aligned_cols=128  Identities=34%  Similarity=0.576  Sum_probs=114.1

Q ss_pred             eeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cc
Q psy12482        106 IVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LT  184 (419)
Q Consensus       106 ~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~  184 (419)
                      ...|+|.+++.|.+..+.|.|+|++|++|+..+.. |.+||||++++.++.....+++|++++++.||+|||+|.|. +.
T Consensus        13 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~   91 (142)
T 2chd_A           13 TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSN-GLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGIT   91 (142)
T ss_dssp             -CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTT-SCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCC
T ss_pred             CccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCC-CCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccC
Confidence            34799999999999999999999999999999887 89999999999976655568999999999999999999999 77


Q ss_pred             cCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        185 LEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       185 ~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      ..++....|.|+|||++.++++++||++.++|.++........|++|..+
T Consensus        92 ~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p  141 (142)
T 2chd_A           92 EEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV  141 (142)
T ss_dssp             HHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred             HHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence            66666679999999999999999999999999998877777788888653

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.90  E-value=4.5e-23  Score=169.12  Aligned_cols=126  Identities=30%  Similarity=0.570  Sum_probs=111.9

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cccC
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLE  186 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~  186 (419)
                      .|+|.+++.|.+..+.|.|+|++|++|+.++...+.+||||++++.+++.  .+++|++++++.||+|||+|.|. ++.+
T Consensus         8 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~~v~~~   85 (138)
T 1ugk_A            8 LGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLDPAFDETFTFYGIPYT   85 (138)
T ss_dssp             CCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTC--SEEECCCCSSCSSCEEEEEEEEECCCST
T ss_pred             cEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCC--ceEecCcCcCCCCCcEeeEEEEcCcCHH
Confidence            79999999999999999999999999999987337899999999987653  58999999999999999999996 8888


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCC-CceecCcccc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPS-PKCYPLQERS  235 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~-~~w~~L~~~~  235 (419)
                      ++....|.|+|||++.++++++||++.++|.++....+. ..|++|.++.
T Consensus        86 ~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~  135 (138)
T 1ugk_A           86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP  135 (138)
T ss_dssp             TGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred             HhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence            777789999999999999999999999999998776555 4578887654

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.90  E-value=1.3e-23  Score=175.43  Aligned_cols=127  Identities=24%  Similarity=0.401  Sum_probs=112.4

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      ..|++.++|.|.+..+.|.|+|++|++|+..+ . +.+||||++++.++.....+++|++++++.||+|||+|.|.+...
T Consensus        12 ~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~-g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   89 (153)
T 3fbk_A           12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-P-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEE   89 (153)
T ss_dssp             -CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-S-SCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGG
T ss_pred             CCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-C-CCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccH
Confidence            37999999999999999999999999999998 5 889999999998776556789999999999999999999998776


Q ss_pred             cccccEEEEEEEecCCCCC-CceeEEEEEeCccccc-CCCCCceecCccccc
Q psy12482        187 DLECRTLWLSVWHSDMFGR-NDFLGEVMMSLENKVF-DDPSPKCYPLQERSE  236 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~-~~~iG~~~~~l~~~~~-~~~~~~w~~L~~~~~  236 (419)
                      ++.. .|.|+|||++.+++ +++||++.++|.++.. ......||+|.+...
T Consensus        90 ~~~~-~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~  140 (153)
T 3fbk_A           90 DDQK-RLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL  140 (153)
T ss_dssp             GTTS-EEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTG
T ss_pred             HhCC-EEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhh
Confidence            6654 59999999998876 8999999999999874 667789999987644

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.90  E-value=4.1e-23  Score=172.39  Aligned_cols=132  Identities=20%  Similarity=0.294  Sum_probs=111.2

Q ss_pred             hccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482        242 ICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRST  321 (419)
Q Consensus       242 ~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~  321 (419)
                      ....|++.++++|.+.               .+.|.|+|++|+||+.++.+.+||||+|.+.+......+++|+++++++
T Consensus        10 ~~~~G~~~lsL~y~~~---------------~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~   74 (153)
T 3fbk_A           10 HKVQGAGQLRLSIDAQ---------------DRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCR   74 (153)
T ss_dssp             ---CCCCEEEEEEEES---------------SSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCS
T ss_pred             cCCCCEEEEEEEEECC---------------CCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCC
Confidence            3456999999999998               8999999999999999984489999999998776667789999999999


Q ss_pred             CCccccEEEEcccCccccccCeEEEEEEECCCCCC-CceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCce
Q psy12482        322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTS-NEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFW  400 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~-~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~  400 (419)
                      ||+|||+|.|. ++..++... |.|+|||++.+++ +++||++.|+|++                        +..|+..
T Consensus        75 nP~wne~f~f~-v~~~~~~~~-L~i~V~d~d~~~~~d~~lG~~~i~l~~------------------------l~~~~~~  128 (153)
T 3fbk_A           75 DPAFHEHFFFP-VQEEDDQKR-LLVTVWNRASQSRQSGLIGCMSFGVKS------------------------LLTPDKE  128 (153)
T ss_dssp             SCEEEEEEEEE-CCGGGTTSE-EEEEEEECCSSGGGCEEEEEEEEEHHH------------------------HTC--CC
T ss_pred             CCccccEEEEe-cccHHhCCE-EEEEEEeCCCCCCCCcEEEEEEEEHHH------------------------hcCCCCc
Confidence            99999999996 766666554 9999999999887 9999999999843                        3456778


Q ss_pred             EEeeeeccCCCCcC
Q psy12482        401 VESCIPLRSSLEFS  414 (419)
Q Consensus       401 i~~w~~l~~~~~~~  414 (419)
                      +++||+|.+..++.
T Consensus       129 ~~~W~~L~~~~~g~  142 (153)
T 3fbk_A          129 ISGWYYLLGEHLGR  142 (153)
T ss_dssp             EEEEEECBCTTGGG
T ss_pred             cccEEECCChhhcc
Confidence            89999998887654

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.90  E-value=1.3e-23  Score=173.26  Aligned_cols=126  Identities=38%  Similarity=0.772  Sum_probs=111.4

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCC---------CCeeecccccCCCCceecc
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSK---------AGKRKTRVKKHTLSPVFDE  177 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~---------~~~~kT~~~~~t~nP~wne  177 (419)
                      .+|+|.+++.|.  .+.|.|+|++|++|+.++.. |.+||||++++.+....         ..+++|++++++.||+|||
T Consensus         5 ~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~-g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne   81 (142)
T 1rh8_A            5 ITGEIQLQINYD--LGNLIIHILQARNLVPRDNN-GYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ   81 (142)
T ss_dssp             CCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSS-SCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred             cceEEEEEEEEc--CCEEEEEEEEecCCCCCCCC-CCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCC
Confidence            479999999998  78999999999999999987 89999999999865421         1357999999999999999


Q ss_pred             EEEEE-cccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        178 VLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       178 ~f~f~-v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      +|.|. ++.+++....|.|+|||++.++++++||++.++|.++........||+|.+..
T Consensus        82 ~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            99997 77777777799999999999999999999999999987777888999998764

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.90  E-value=3.4e-23  Score=172.99  Aligned_cols=124  Identities=29%  Similarity=0.404  Sum_probs=103.0

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      ..|+|.+++.|.+..+.|.|+|++|++|+.++.. +.+||||+|++.+++....+++|++++++.||+|||+|.|.+...
T Consensus        15 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   93 (153)
T 1w15_A           15 GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVS-GLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE   93 (153)
T ss_dssp             -CCEEEEEEEEETTTTEEEEEEEEEESCC-------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSS
T ss_pred             cccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCC-CCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHH
Confidence            4799999999999999999999999999999887 889999999998765444468999999999999999999999888


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      ++....|.|+|||++.++++++||++.+++.+  ......+|++|..
T Consensus        94 ~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  138 (153)
T 1w15_A           94 SLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICD  138 (153)
T ss_dssp             SSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred             HhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence            88778999999999999999999999999987  2334455666544

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.90  E-value=7.1e-23  Score=165.91  Aligned_cols=114  Identities=35%  Similarity=0.586  Sum_probs=97.3

Q ss_pred             cccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482        244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTS  322 (419)
Q Consensus       244 ~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n  322 (419)
                      ..|+|.+++.|.+.               .+.|.|+|++|+||++++.+ .+||||++.+.+++....+++|+++++++|
T Consensus         3 ~~G~l~~~l~y~~~---------------~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~n   67 (129)
T 2bwq_A            3 LSGQLSIKLWFDKV---------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLE   67 (129)
T ss_dssp             CCCEEEEEEEEETT---------------TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSS
T ss_pred             eeEEEEEEEEEccC---------------CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCC
Confidence            35999999999998               79999999999999999887 899999999987666678899999999999


Q ss_pred             CccccEEEEcccCccccccCeEEEEEEECCCCCC--CceeEEEEEeCCCCCc
Q psy12482        323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTS--NEFLGGIRLNLGHGKH  372 (419)
Q Consensus       323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~--~~~lG~~~i~l~~~~~  372 (419)
                      |+|||.|.|..++..++....|.|+|||++.+++  +++||.+.|+|+++..
T Consensus        68 P~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~  119 (129)
T 2bwq_A           68 PKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL  119 (129)
T ss_dssp             CEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCC
T ss_pred             CccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCC
Confidence            9999999996345566777889999999999987  9999999999987543

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.89  E-value=1.6e-23  Score=174.55  Aligned_cols=112  Identities=20%  Similarity=0.276  Sum_probs=100.5

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCC-CcceeecccccCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKG-RASKHKTGIIKRS  320 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~-~~~~~~T~~~~~t  320 (419)
                      ...|+|.+++.|.+.               .+.|.|.|++|+||++++.+ .+||||++.+.+... ...+++|+++++|
T Consensus        27 ~~~G~l~~sl~y~~~---------------~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~t   91 (155)
T 2z0u_A           27 VGATRIQIALKYDEK---------------NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDAS   91 (155)
T ss_dssp             -CCEEEEEEEEEETT---------------TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECC
T ss_pred             CCcEEEEEEEEEcCC---------------CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCC
Confidence            456999999999987               79999999999999999987 999999999986432 2347999999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      +||+|||+|.|. ++..++....|.|+|||++.++++++||++.|+|.++
T Consensus        92 lnP~wnE~F~f~-v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l  140 (155)
T 2z0u_A           92 DTLVFNEVFWVS-MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV  140 (155)
T ss_dssp             SSEEEEEEEEEE-CCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTS
T ss_pred             CCCccccEEEEE-cCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence            999999999997 8887787888999999999999999999999999885

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.89  E-value=2.6e-23  Score=172.67  Aligned_cols=111  Identities=32%  Similarity=0.599  Sum_probs=100.9

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccC-CC-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVK-SN-TVDAFCKAYLLPDKGRASKHKTGIIKRS  320 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~-~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t  320 (419)
                      ..+|+|.+++.|.+.               .+.|.|+|++|+||+.++ .+ .+||||++.+.+......+++|.+++++
T Consensus         7 ~~~G~l~~sl~y~~~---------------~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t   71 (148)
T 3fdw_A            7 FVTGRIAFSLKYEQQ---------------TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDT   71 (148)
T ss_dssp             CCCCEEEEEEEEETT---------------TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSC
T ss_pred             ccceEEEEEEEEeCC---------------CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCC
Confidence            456999999999998               799999999999999988 45 8999999999877655678999999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~  369 (419)
                      +||+|||+|.|. ++..++....|.|+|||++.++++++||++.|+|++
T Consensus        72 ~nP~wne~f~f~-v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~  119 (148)
T 3fdw_A           72 VNPLYDETLRYE-IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS  119 (148)
T ss_dssp             SSCEEEEEEEEE-CCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHH
T ss_pred             CCCcEeeEEEEE-eChhHhCceEEEEEEEECCCCcCCcEEEEEEEEccc
Confidence            999999999997 888888778899999999999999999999999965

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=2.4e-22  Score=165.35  Aligned_cols=112  Identities=29%  Similarity=0.496  Sum_probs=98.7

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST  321 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~  321 (419)
                      ...|+|.+++.|.+.               .+.|.|+|++|+||+.++.. .+||||+|.+.++.  ..+++|+++++++
T Consensus        10 ~~~G~l~~~l~y~~~---------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~   72 (141)
T 2d8k_A           10 ENLGRIQFSVGYNFQ---------------ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDK--KHKLETKVKRKNL   72 (141)
T ss_dssp             CCCCEEEEEEEECSS---------------SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCC--SSEEECCCCTTCS
T ss_pred             ceeeEEEEEEEEeCC---------------CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCC--CccEeCceEcCCC
Confidence            356999999999987               79999999999999999877 89999999997543  3578999999999


Q ss_pred             CCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482        322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      ||+|||.|.|..++..++....|.|+|||++.++++++||++.|+|.++.
T Consensus        73 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~  122 (141)
T 2d8k_A           73 NPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVD  122 (141)
T ss_dssp             SCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSC
T ss_pred             CCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhc
Confidence            99999999996345566667889999999999999999999999998853

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.89  E-value=2.2e-22  Score=167.74  Aligned_cols=121  Identities=25%  Similarity=0.446  Sum_probs=103.0

Q ss_pred             hccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482        242 ICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRS  320 (419)
Q Consensus       242 ~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t  320 (419)
                      ....|+|.+++.|.+.               .+.|.|+|++|+||+.++.+ .+||||+|.+.+++  ..+++|++++++
T Consensus        25 ~~~~G~l~~~l~y~~~---------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t   87 (152)
T 1rsy_A           25 EEKLGKLQYSLDYDFQ---------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK--KKKFETKVHRKT   87 (152)
T ss_dssp             -CCCCEEEEEEEEETT---------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC--CSCEECCCCTTC
T ss_pred             CCCceEEEEEEEEeCC---------------CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCC--CceEeccccCCC
Confidence            3456999999999987               79999999999999999987 89999999997543  356899999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecc
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWM  380 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~  380 (419)
                      +||+|||.|.|. ++..++....|.|+|||++.++++++||++.|+|.++........||
T Consensus        88 ~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~  146 (152)
T 1rsy_A           88 LNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR  146 (152)
T ss_dssp             SSCEEEEEEEEC-CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEE
T ss_pred             CCCcCcccEEEe-ecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEE
Confidence            999999999996 87777777889999999999999999999999998753333333333

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.88  E-value=2.5e-22  Score=166.87  Aligned_cols=124  Identities=30%  Similarity=0.550  Sum_probs=108.9

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      ..|+|.+++.|.  .+.|.|+|++|++|+.++.. +.+||||+|++.+++....+++|++++++.||+|||+|.|.+...
T Consensus        18 ~~G~l~~~l~~~--~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   94 (149)
T 1a25_A           18 RRGRIYIQAHID--REVLIVVVRDAKNLVPMDPN-GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES   94 (149)
T ss_dssp             TTCEEEEEEEES--SSEEEEEEEEEESCCCCSTT-SCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSG
T ss_pred             cceEEEEEEEec--CCEEEEEEEEeeCCCCCCCC-CCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccc
Confidence            379999999984  68999999999999999887 889999999999766555688999999999999999999998765


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      ++. ..|.|+|||++.++++++||++.++|.++... +...||+|.+..
T Consensus        95 ~~~-~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~  141 (149)
T 1a25_A           95 DKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQE  141 (149)
T ss_dssp             GGG-CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHH
T ss_pred             cCC-CEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCC
Confidence            543 48999999999999999999999999997654 578899998753

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=3.7e-22  Score=164.45  Aligned_cols=113  Identities=24%  Similarity=0.496  Sum_probs=99.6

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTS  322 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n  322 (419)
                      ...|+|.+++.|.+.               .+.|.|.|++|+||+.++.+.+||||+|.+.+++....+++|+++++++|
T Consensus         8 ~~~G~l~~~l~y~~~---------------~~~L~v~v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT~v~~~t~n   72 (142)
T 2dmg_A            8 SPLGQIQLTIRHSSQ---------------RNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLN   72 (142)
T ss_dssp             CSSCEEEEEEEEETT---------------TTEEEEEEEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEECCCCCSCSS
T ss_pred             CCcceEEEEEEEeCC---------------CCEEEEEEEEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccCCccCCCCC
Confidence            456999999999987               79999999999999998765599999999987655567899999999999


Q ss_pred             CccccEEEEcccCccccccCeEEEEEEECCCCCC--CceeEEEEEeCCCCC
Q psy12482        323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTS--NEFLGGIRLNLGHGK  371 (419)
Q Consensus       323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~--~~~lG~~~i~l~~~~  371 (419)
                      |+|||+|.|. ++..++....|.|+|||++.+++  +++||++.|+|..+.
T Consensus        73 P~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~  122 (142)
T 2dmg_A           73 PVFDQSFDFS-VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEE  122 (142)
T ss_dssp             CEEEEEEEEC-CCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCST
T ss_pred             CCcCceEEEE-ecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEeccccc
Confidence            9999999997 87777777789999999998764  579999999998853

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.88  E-value=1.3e-22  Score=167.12  Aligned_cols=131  Identities=32%  Similarity=0.488  Sum_probs=111.4

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST  321 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~  321 (419)
                      ...|+|.+++.|.+.               .+.|.|+|++|+||+.++.+ .+||||+|.+.+......+++|+++++++
T Consensus         5 ~~~G~i~~~l~y~~~---------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~   69 (141)
T 1v27_A            5 SSGGQLSIKLWFDKV---------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTL   69 (141)
T ss_dssp             CCCCEEEEEEEEETT---------------TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCS
T ss_pred             CcccEEEEEEEEeCC---------------CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCC
Confidence            356999999999988               79999999999999999987 89999999997765567789999999999


Q ss_pred             CCccccEEEEcccCccccccCeEEEEEEECCCCCC--CceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCc
Q psy12482        322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTS--NEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNF  399 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~--~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~  399 (419)
                      ||+|||.|.|..++..++....|.|+|||++.+++  +++||++.|+|.++..                       .   
T Consensus        70 nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~-----------------------~---  123 (141)
T 1v27_A           70 EPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL-----------------------D---  123 (141)
T ss_dssp             SCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCC-----------------------S---
T ss_pred             CCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCC-----------------------C---
Confidence            99999999996345567777889999999999987  9999999999976311                       1   


Q ss_pred             eEEeeeeccCCCCcC
Q psy12482        400 WVESCIPLRSSLEFS  414 (419)
Q Consensus       400 ~i~~w~~l~~~~~~~  414 (419)
                      ....|++|.+..+++
T Consensus       124 ~~~~W~~L~~~~~g~  138 (141)
T 1v27_A          124 DEPHWYKLQTHDSGP  138 (141)
T ss_dssp             SEEEEEECBCCSSCC
T ss_pred             CCCceEECcccccCC
Confidence            157888888776654

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.88  E-value=1.6e-22  Score=171.82  Aligned_cols=125  Identities=29%  Similarity=0.507  Sum_probs=109.6

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCC-CCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEccc
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDT-KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTL  185 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~-~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~  185 (419)
                      ..|+|.+++.|  ..+.|.|+|++|++|+.++. . +.+||||+|++.+++....+++|++++++.||+|||+|.|.+..
T Consensus        17 ~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~-g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~   93 (171)
T 2q3x_A           17 AMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSK-STPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP   93 (171)
T ss_dssp             CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC----CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC
T ss_pred             CccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCC-CCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC
Confidence            37999999999  58999999999999999985 4 88999999999876544457899999999999999999999854


Q ss_pred             CcccccEEEEEEE-ecCCCCCCceeEEEEEeCcccccCCCCCceecCccccch
Q psy12482        186 EDLECRTLWLSVW-HSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEI  237 (419)
Q Consensus       186 ~~l~~~~l~i~v~-d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~  237 (419)
                         ....|.|+|| |++.++++++||++.++|.++.......+||+|.+....
T Consensus        94 ---~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~~  143 (171)
T 2q3x_A           94 ---QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSL  143 (171)
T ss_dssp             ---TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCGGGG
T ss_pred             ---CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCcccc
Confidence               3568999999 999999999999999999998878888999999887653

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.88  E-value=3.9e-22  Score=164.57  Aligned_cols=121  Identities=25%  Similarity=0.462  Sum_probs=104.1

Q ss_pred             hccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482        242 ICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRS  320 (419)
Q Consensus       242 ~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t  320 (419)
                      ....|+|.+++.|.+.               .+.|.|+|++|++|+.++.. .+||||+|.+.++.  ..+++|++++++
T Consensus        17 ~~~~G~l~~~l~y~~~---------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t   79 (143)
T 3f04_A           17 VEKLGKLQYSLDYDFQ---------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK--KKKFETKVHRKT   79 (143)
T ss_dssp             CCCCCEEEEEEEEETT---------------TTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCC--SCCEECCCCCSC
T ss_pred             ccCeEEEEEEEEEeCC---------------CCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCC--CccEECccCcCC
Confidence            4567999999999988               89999999999999999887 89999999997653  347899999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecc
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWM  380 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~  380 (419)
                      .||+|||+|.|. ++..++....|.|+|||++.++++++||++.|+|+++........||
T Consensus        80 ~nP~wne~f~f~-v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~  138 (143)
T 3f04_A           80 LNPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR  138 (143)
T ss_dssp             SSCEEEEEEEEC-CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEE
T ss_pred             CCCcCcCeEEEe-ecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEE
Confidence            999999999996 88777777889999999999999999999999998754333333333

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.87  E-value=4.8e-22  Score=163.83  Aligned_cols=123  Identities=28%  Similarity=0.484  Sum_probs=104.7

Q ss_pred             hccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482        242 ICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRS  320 (419)
Q Consensus       242 ~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t  320 (419)
                      ....|+|.+++.|.+.               .+.|.|+|++|+||+.++.+ .+||||+|.+.+......+++|++++++
T Consensus        12 ~~~~G~l~~~l~y~~~---------------~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t   76 (142)
T 2chd_A           12 ATTLGALEFSLLYDQD---------------NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNT   76 (142)
T ss_dssp             --CCCEEEEEEEEEGG---------------GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSC
T ss_pred             CCccceEEEEEEEeCC---------------CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCC
Confidence            4567999999999987               79999999999999999977 8999999999876556778999999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeec
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDW  379 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w  379 (419)
                      +||+|||.|.|..++..++....|.|+|||++.++++++||++.|+|.++...+...-|
T Consensus        77 ~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~  135 (142)
T 2chd_A           77 RNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFN  135 (142)
T ss_dssp             SSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEE
T ss_pred             CCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEE
Confidence            99999999999546666666678999999999999999999999999886544433333

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.87  E-value=1.5e-21  Score=162.93  Aligned_cols=130  Identities=27%  Similarity=0.393  Sum_probs=102.4

Q ss_pred             ccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCC-CCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEE
Q psy12482        119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKS-KAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSV  197 (419)
Q Consensus       119 ~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v  197 (419)
                      +..+.|+|+|++|++|+..+.. |.+||||++++.+.+. ...+++|++++++.||+|||+|.|.+...   ...|.|+|
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~l~~~V   92 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDIL-GASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ---QHRLLFEV   92 (153)
T ss_dssp             TTCEEEEEEEEEEESCC--------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT---TCEEEEEE
T ss_pred             CCccEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC---CCEEEEEE
Confidence            3467899999999999999887 8899999999984332 12468999999999999999999998753   46899999


Q ss_pred             EecCCCCCCceeEEEEEeCcccccCCCC------CceecCccccchhhhhhccccceEEEEEEeC
Q psy12482        198 WHSDMFGRNDFLGEVMMSLENKVFDDPS------PKCYPLQERSEILDELICSKGELIIGLKFVP  256 (419)
Q Consensus       198 ~d~~~~~~~~~iG~~~~~l~~~~~~~~~------~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~  256 (419)
                      ||++.++++++||++.++|.++......      ..|++|.+....    ....|+|+|+++|.|
T Consensus        93 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~----~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           93 FDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHK----SRVKGYLRLKMTYLP  153 (153)
T ss_dssp             EECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTT----CCCCSEEEEEEEECC
T ss_pred             EECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCC----CCcceEEEEEEEEeC
Confidence            9999999999999999999998665543      589999876421    345699999999986

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.87  E-value=1.1e-21  Score=159.81  Aligned_cols=108  Identities=34%  Similarity=0.594  Sum_probs=90.7

Q ss_pred             cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      .+.|.|+|++|+||+. +.+ .+||||+|.+.+++....+++|+++++++||+|||+|.|..++..++....|.|+|||+
T Consensus        19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~   97 (134)
T 2b3r_A           19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSA   97 (134)
T ss_dssp             TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEEC
Confidence            6899999999999997 555 89999999998765567789999999999999999999943677777778899999999


Q ss_pred             CCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        352 DRLTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      +.++++++||++.|+|+++...+....||.
T Consensus        98 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~  127 (134)
T 2b3r_A           98 ESLRENFFLGGITLPLKDFNLSKETVKWYQ  127 (134)
T ss_dssp             CSSSCCEEEEEEEEEGGGSCTTSCEEEEEE
T ss_pred             CCCCCCcEEEEEEEEhhhccCCCCcceeEE
Confidence            999999999999999987543333333333

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.87  E-value=1.6e-21  Score=159.80  Aligned_cols=111  Identities=24%  Similarity=0.474  Sum_probs=99.1

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCC-C-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKS-N-TVDAFCKAYLLPDKGRASKHKTGIIKRS  320 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~-~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t  320 (419)
                      ...|+|.+++.|.+.               .+.|.|+|++|+||+.++. + .+||||+|.+.+++  ..+++|++++++
T Consensus         6 ~~~G~l~~~l~y~~~---------------~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~--~~~~kT~v~~~t   68 (138)
T 1ugk_A            6 SGLGTLFFSLEYNFE---------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK--KHKVKTRVLRKT   68 (138)
T ss_dssp             CCCCEEEEEEEEEGG---------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTT--CSEEECCCCSSC
T ss_pred             CccEEEEEEEEEECC---------------CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCC--CceEecCcCcCC
Confidence            356999999999987               7999999999999999987 3 89999999997643  367999999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      +||+|||.|.|..++..++....|.|+|||++.++++++||++.|+|.++
T Consensus        69 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l  118 (138)
T 1ugk_A           69 LDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI  118 (138)
T ss_dssp             SSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTC
T ss_pred             CCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHc
Confidence            99999999999437777777788999999999999999999999999885

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.87  E-value=3e-22  Score=165.07  Aligned_cols=111  Identities=39%  Similarity=0.766  Sum_probs=96.8

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCC---------ccee
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGR---------ASKH  312 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~---------~~~~  312 (419)
                      ...|+|.+++.|.                 .+.|.|+|++|+||++++.+ .+||||+|.+.+..+.         ..++
T Consensus         4 ~~~G~i~~~l~y~-----------------~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~   66 (142)
T 1rh8_A            4 PITGEIQLQINYD-----------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKR   66 (142)
T ss_dssp             CCCCEEEEEEEEE-----------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHT
T ss_pred             CcceEEEEEEEEc-----------------CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCccccccccccccee
Confidence            3469999999997                 38999999999999999987 8999999999765322         2468


Q ss_pred             ecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        313 KTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       313 ~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      +|+++++++||+|||.|.|..++.+++....|.|+|||++.++++++||++.|+|+++
T Consensus        67 kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l  124 (142)
T 1rh8_A           67 RTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST  124 (142)
T ss_dssp             TTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSC
T ss_pred             eccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEecccc
Confidence            9999999999999999999546777777788999999999999999999999999874

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.87  E-value=1.6e-21  Score=159.69  Aligned_cols=108  Identities=23%  Similarity=0.323  Sum_probs=95.4

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST  321 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~  321 (419)
                      ...|+|.+++.|.+.               .+.|.|+|++|++   ++.+ .+||||+|.+.+.. ...+++|+++++++
T Consensus        10 ~~~G~l~~sl~y~~~---------------~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~-~~~~~kT~v~~~tl   70 (138)
T 1wfm_A           10 NQAPKLHYCLDYDCQ---------------KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRT-GSVEAQTALKKRQL   70 (138)
T ss_dssp             SSCCEEEEEEEEETT---------------TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETT-EEEEEECCCCCCCS
T ss_pred             CcceEEEEEEEEeCC---------------CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCC-CcccEecccCcCCC
Confidence            356999999999987               7999999999993   5666 89999999997642 34568999999999


Q ss_pred             CCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      ||+|||+|.|. ++..++....|.|+|||++.++++++||++.|+|.++
T Consensus        71 nP~wnE~f~f~-v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l  118 (138)
T 1wfm_A           71 HTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT  118 (138)
T ss_dssp             SEECSSCEEEE-CCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSS
T ss_pred             CCcCCceEEEE-ecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccc
Confidence            99999999997 8887887788999999999999999999999999884

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=1.5e-21  Score=161.82  Aligned_cols=110  Identities=24%  Similarity=0.400  Sum_probs=96.8

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEecccccccc-CC------C-CCCcEEEEEEeCCCCCcceeec
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPV-KS------N-TVDAFCKAYLLPDKGRASKHKT  314 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~-~~------~-~~dpyV~v~~~~~~~~~~~~~T  314 (419)
                      ...|+|.+++.|.+.               .+.|.|+|++|+||+.. +.      . .+||||+|.+.++.  ..+++|
T Consensus        10 ~~~G~l~~~l~y~~~---------------~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~--~~~~kT   72 (147)
T 2enp_A           10 YQLGMLHFSTQYDLL---------------HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQ--KNSKQT   72 (147)
T ss_dssp             CCCCEEEEEEEEETT---------------TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCC--SSCEEC
T ss_pred             CcceEEEEEEEEcCC---------------CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCC--CcceEe
Confidence            456999999999998               79999999999999984 32      2 78999999998643  246899


Q ss_pred             ccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        315 GIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       315 ~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      +++++++||+|||.|.|. ++..++....|.|+|||++.++++++||++.|+|.++
T Consensus        73 ~v~~~t~nP~wne~f~f~-v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l  127 (147)
T 2enp_A           73 GVKRKTQKPVFEERYTFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV  127 (147)
T ss_dssp             CCCCSCSSCCCCBCCEEC-CCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTS
T ss_pred             ecccCCCCCeEeeeEEEE-eChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhc
Confidence            999999999999999996 8777777778999999999999999999999999874

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=2.3e-21  Score=159.29  Aligned_cols=128  Identities=23%  Similarity=0.372  Sum_probs=107.7

Q ss_pred             cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc-cccEEEEEEE
Q psy12482        120 KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSVW  198 (419)
Q Consensus       120 ~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v~  198 (419)
                      ..+.|.|+|++|++|+..+.  +.+||||++++.     ..+++|++++++.||+|||+|.|.+....+ ....|.|+||
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~--g~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~   77 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF--GKPDPIVSVIFK-----DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVK   77 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS--SCCCEEEEEECS-----SCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEE
T ss_pred             CCcEEEEEEEEeeCCCCCCC--CCCCeEEEEEEC-----CEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEE
Confidence            36789999999999999886  789999999997     346899999999999999999999876543 3569999999


Q ss_pred             ecCCCCCCceeEEEEEeCcccccCCCCCceec---CccccchhhhhhccccceEEEEEEeCCCC
Q psy12482        199 HSDMFGRNDFLGEVMMSLENKVFDDPSPKCYP---LQERSEILDELICSKGELIIGLKFVPPED  259 (419)
Q Consensus       199 d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~---L~~~~~~~~~~~~~~G~l~l~l~~~~~~~  259 (419)
                      |++.++++++||++.++|.++........|+.   |.....     ....|+|.++++|.|.+.
T Consensus        78 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~-----~~~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A           78 DFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKG-----QDTGATIDLVIGYDPPSG  136 (140)
T ss_dssp             ETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTC-----CEEEEEEEEEEEECCCBS
T ss_pred             ECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCC-----CCCCCEEEEEEEEECCCC
Confidence            99999999999999999999877777788988   443322     124599999999998643

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.86  E-value=8.8e-22  Score=160.29  Aligned_cols=126  Identities=24%  Similarity=0.354  Sum_probs=106.9

Q ss_pred             EEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEE
Q psy12482        115 LQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLW  194 (419)
Q Consensus       115 l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~  194 (419)
                      +.|....+.|+|+|++|++|+..+.. |.+||||++++.+     .+++|++++++.||+|||+|.|.+...   ...|.
T Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~---~~~l~   76 (133)
T 2ep6_A            6 SGDVKDVGILQVKVLKAADLLAADFS-GKSDPFCLLELGN-----DRLQTHTVYKNLNPEWNKVFTFPIKDI---HDVLE   76 (133)
T ss_dssp             CCSCCCSEEEEEEEEEEESCCCSSSS-SCCCEEEEEEETT-----EEEECCCCSSCSSCCCCEEEEEEESCT---TCEEE
T ss_pred             ccccCCceEEEEEEEeeECCCCCCCC-CCcCeEEEEEECC-----EEEEeeeecCCCCCccccEEEEEecCC---CCEEE
Confidence            45667789999999999999999887 8999999999963     368999999999999999999998642   45899


Q ss_pred             EEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482        195 LSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       195 i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      |+|||++..+++++||++.+++.++..  +..+|++|......    ....|+|+|++.|.
T Consensus        77 i~V~d~d~~~~~~~lG~~~i~l~~l~~--~~~~w~~L~~~~~~----~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           77 VTVFDEDGDKPPDFLGKVAIPLLSIRD--GQPNCYVLKNKDLE----QAFKGVIYLEMDLI  131 (133)
T ss_dssp             EEEEEEETTEEEEECCBCEEEGGGCCS--SCCEECCCBCSCTT----SCCSSEEEEEEEEE
T ss_pred             EEEEECCCCCCCCeeEEEEEEHHHccC--CCceEEEeecCCCC----CccceEEEEEEEEE
Confidence            999999999899999999999999754  34689999865432    24569999999885

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.86  E-value=4.6e-21  Score=159.19  Aligned_cols=109  Identities=30%  Similarity=0.594  Sum_probs=94.6

Q ss_pred             hccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482        242 ICSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRS  320 (419)
Q Consensus       242 ~~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t  320 (419)
                      ....|+|.+++.|.                 .+.|.|+|++|+||+.++.. .+||||+|.+.+......+++|++++++
T Consensus        16 ~~~~G~l~~~l~~~-----------------~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t   78 (149)
T 1a25_A           16 MERRGRIYIQAHID-----------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS   78 (149)
T ss_dssp             -CTTCEEEEEEEES-----------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSC
T ss_pred             CCcceEEEEEEEec-----------------CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCC
Confidence            34569999999984                 47899999999999999987 8999999999876555678999999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~  369 (419)
                      +||+|||+|.|. +...++. ..|.|+|||++.++++++||++.|+|.+
T Consensus        79 ~nP~wne~f~f~-v~~~~~~-~~L~i~V~d~d~~~~~~~iG~~~i~l~~  125 (149)
T 1a25_A           79 LNPEWNETFRFQ-LKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISE  125 (149)
T ss_dssp             SSCEEEEEEEEE-CCSGGGG-CEEEEEEEECCSSSCCEEEEEEEEEHHH
T ss_pred             CCCcCCcEEEEE-eccccCC-CEEEEEEEECCCCCCCCEEEEEEEEHHH
Confidence            999999999997 6654443 5699999999999999999999999965

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.85  E-value=6.9e-21  Score=162.68  Aligned_cols=131  Identities=27%  Similarity=0.395  Sum_probs=100.9

Q ss_pred             ccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCC-CCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEE
Q psy12482        119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKS-KAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSV  197 (419)
Q Consensus       119 ~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~-~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v  197 (419)
                      ...+.|+|+|++|++|+.++.. +.+||||+|++..... ...+++|++++++.||+|||+|.|.+...   ...|.|+|
T Consensus         5 ~~~g~L~V~v~~a~~L~~~d~~-g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~---~~~L~~~V   80 (176)
T 3m7f_B            5 DDTRVVRVKVIAGIGLAKKDIL-GASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ---RHRILFEV   80 (176)
T ss_dssp             TTCEEEEEEEEEEESCC---CC-CCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT---TCEEEEEE
T ss_pred             CCcEEEEEEEEEeeCCCCcCCC-CCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC---CCEEEEEE
Confidence            3468899999999999999887 8999999999984322 12468999999999999999999998753   35899999


Q ss_pred             EecCCCCCCceeEEEEEeCcccccCCCC-C-----ceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        198 WHSDMFGRNDFLGEVMMSLENKVFDDPS-P-----KCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       198 ~d~~~~~~~~~iG~~~~~l~~~~~~~~~-~-----~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      ||++.++++++||++.|+|.++...... .     .||+|.+....    ....|+|.|+++|.|.
T Consensus        81 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~----~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           81 FDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK----SRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             EECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTT----CCCCSEEEEEEEECC-
T ss_pred             EECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCC----CccCEEEEEEEEEEeC
Confidence            9999999999999999999998765443 1     79999876442    3356999999999997

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.85  E-value=1.7e-20  Score=155.59  Aligned_cols=120  Identities=23%  Similarity=0.366  Sum_probs=102.9

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      .+.|+|+|++|++|+..+.. |.+||||++++.     ..+++|++++++.||+|||+|.|.+...   ...|.|+|||+
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~-g~~dpyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~l~~~v~d~   86 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKT-GSSDPYVTVQVG-----KTKKRTKTIYGNLNPVWEENFHFECHNS---SDRIKVRVLDE   86 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTT-SCCCEEEEEEET-----TEEEECCCCCSCSSCEEEEEEEEEECST---TCEEEEEEEEC
T ss_pred             ccEEEEEEEeeeCCCCCCCC-CCcCeEEEEEEC-----CEEEECCccCCCCCCCcccEEEEEecCC---CCEEEEEEEEC
Confidence            58899999999999999987 899999999994     3478999999999999999999998653   35899999999


Q ss_pred             CCC-----------CCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482        201 DMF-----------GRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       201 ~~~-----------~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      +..           +++++||++.++|.++  ......|++|.+....    ....|+|+|+++|.
T Consensus        87 d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~----~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           87 DDDIKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDK----SAVSGAIRLHISVE  146 (148)
T ss_dssp             CCSHHHHHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTT----CCCCCEEEEEEEEE
T ss_pred             CCCccccccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCC----CCCceEEEEEEEEE
Confidence            985           7899999999999987  3456789999865432    23569999999985

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.84  E-value=5.2e-21  Score=158.54  Aligned_cols=116  Identities=21%  Similarity=0.340  Sum_probs=97.6

Q ss_pred             CCEEEEEEEeecCCCCCCCC---------CCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCccccc
Q psy12482        121 QGALEIHVKQCKDLAPVDTK---------RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECR  191 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~---------~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~  191 (419)
                      .+.|+|+|++|++|++++..         .+.+||||+|.+..    ....+|+++++|+||+|||+|.|.+..    ..
T Consensus        28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~----~~~~kT~v~~ktlnP~WNE~F~f~v~~----~~   99 (157)
T 2fk9_A           28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ----VRVGQTSTKQKTNKPTYNEEFCANVTD----GG   99 (157)
T ss_dssp             EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETT----EEEEECCCCSSCSSCEEEEEEEEEEEE----EC
T ss_pred             ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECC----EeeEEeeecCCCCCCccCcEEEEEcCC----CC
Confidence            57899999999999988721         15789999999952    124689999999999999999999854    34


Q ss_pred             EEEEEEEecCCCCCCceeEEEEEeCcccccC----CCCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482        192 TLWLSVWHSDMFGRNDFLGEVMMSLENKVFD----DPSPKCYPLQERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       192 ~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~----~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      .|.|+|||++.++++++||++.|+|.++...    .....|++|.+           .|+|+|.++|.
T Consensus       100 ~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-----------~G~i~l~l~~~  156 (157)
T 2fk9_A          100 HLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-----------EGKVFVVITLT  156 (157)
T ss_dssp             EEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-----------SCEEEEEEEEC
T ss_pred             EEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-----------CcEEEEEEEEE
Confidence            8999999999999999999999999998654    45688999965           29999999884

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.84  E-value=9.2e-21  Score=160.95  Aligned_cols=121  Identities=26%  Similarity=0.448  Sum_probs=98.6

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCC-C-CCCcEEEEEEeCCCCCcceeecccccCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKS-N-TVDAFCKAYLLPDKGRASKHKTGIIKRS  320 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~-~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t  320 (419)
                      ...|+|.+++.|.                 .+.|.|+|++|+||++++. + .+||||+|.+.+++....+++|++++++
T Consensus        16 ~~~G~l~~~l~y~-----------------~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t   78 (171)
T 2q3x_A           16 PAMGDIQIGMEDK-----------------KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKT   78 (171)
T ss_dssp             -CCCEEEEEEEEE-----------------TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSC
T ss_pred             CCccEEEEEEEEC-----------------CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCC
Confidence            3459999999993                 6999999999999999985 4 8999999999875444568899999999


Q ss_pred             CCCccccEEEEcccCccccccCeEEEEEE-ECCCCCCCceeEEEEEeCCCCCcCCceeecccCCc
Q psy12482        321 TSPQWNHTVVYRDVSLEELSERCLELTVW-DHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSG  384 (419)
Q Consensus       321 ~nP~wne~f~f~~v~~~~~~~~~l~i~V~-d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g  384 (419)
                      +||+|||+|.|. +..   ....|.|+|| |++.++++++||++.|+|.++........||.+..
T Consensus        79 ~nP~wne~f~f~-v~~---~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~  139 (171)
T 2q3x_A           79 LDPLYQQSLVFD-ESP---QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFP  139 (171)
T ss_dssp             SSCEEEEEEECS-SCC---TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBC
T ss_pred             CCCCCCcEEEEE-ecC---CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCC
Confidence            999999999996 643   3467999999 99999999999999999988654444444554433

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.84  E-value=5.3e-21  Score=156.32  Aligned_cols=123  Identities=24%  Similarity=0.389  Sum_probs=104.5

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEcccCcccccEEEEEEEe
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTLEDLECRTLWLSVWH  199 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d  199 (419)
                      .+.|+|+|++|++|+..+.. +.+||||++++.+     .+++|++++ ++.||+|||+|.|.+..   ....|.|+|||
T Consensus         9 ~~~L~v~v~~a~~L~~~d~~-g~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V~d   79 (136)
T 1wfj_A            9 HGTLEVVLVSAKGLEDADFL-NNMDPYVQLTCRT-----QDQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKIFD   79 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSS-CSSCCCEEEESSS-----CEEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEECC
T ss_pred             cEEEEEEEEeccCCCCcccC-CCcCceEEEEECC-----ccceeEeccCCCCCCccCcEEEEEECC---CCCEEEEEEEE
Confidence            46899999999999999987 8999999999963     357999998 89999999999999875   45699999999


Q ss_pred             cCCCCCCceeEEEEEeCcccc-cCCCCCceecCccccchhhhhhccccceEEEEEEeCCCC
Q psy12482        200 SDMFGRNDFLGEVMMSLENKV-FDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPED  259 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~-~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~~  259 (419)
                      ++.++++++||++.++|.++. .......|++|...       ....|+|+|+++|.|...
T Consensus        80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~-------~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD-------EEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEET-------TEEEEEEEEEEEEEECCS
T ss_pred             CCCCCCCceEEEEEEEHHHhccCCCCCcEEEEeecC-------CccCEEEEEEEEEEeCCC
Confidence            999999999999999999973 33345789999721       235599999999998753

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=1.2e-20  Score=152.15  Aligned_cols=121  Identities=15%  Similarity=0.320  Sum_probs=99.8

Q ss_pred             CCEEEEEEEeecCCCCC---CCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEE
Q psy12482        121 QGALEIHVKQCKDLAPV---DTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSV  197 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~---~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v  197 (419)
                      .+.|.|+|++|++|+.+   +.. |.+||||++++.+..  ..+++|++++++.||+|||+|.|.+...+  ...|.|+|
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~-g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~l~i~V   76 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDML-DTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEFILDPNQ--ENVLEITL   76 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHH-CCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEEEECTTS--CCEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccC-CCCCCEEEEEEccCC--CceEEccccCCCCCCcccceEEEEecCCC--CCEEEEEE
Confidence            57899999999999984   444 789999999997544  24789999999999999999999985543  45899999


Q ss_pred             EecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482        198 WHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVP  256 (419)
Q Consensus       198 ~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~  256 (419)
                      ||++.. ++++||++.++|.++..+.....|++|.+.         ..|+|++++...|
T Consensus        77 ~d~d~~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~---------~~g~i~~~le~~~  125 (126)
T 1rlw_A           77 MDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQV---------TEMVLEMSLEVAS  125 (126)
T ss_dssp             EECCSS-CCEEEEEEEEEGGGSCTTCEEEEEEEETTT---------EEEEEEEEEECCC
T ss_pred             EECCCC-CCceeEEEEEEHHHccCCCcEEEEEEcCCC---------ceEEEEEEEEeCC
Confidence            999987 489999999999998877777899999763         2277777765443

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.82  E-value=2.1e-20  Score=152.63  Aligned_cols=118  Identities=19%  Similarity=0.325  Sum_probs=97.6

Q ss_pred             CCEEEEEEEeecCCCCCCCCC----------CCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccc
Q psy12482        121 QGALEIHVKQCKDLAPVDTKR----------QRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLEC  190 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~----------~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~  190 (419)
                      .+.|+|+|++|++|++.+..+          +.+||||++++..    ....+|+++++|+||+|||+|.|.+...    
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~----~~~~~T~~~~~t~nP~WnE~f~f~v~~~----   76 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD----SRIGQTATKQKTNSPAWHDEFVTDVCNG----   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT----EEEEECCCCSSCSSCEEEEEEEEEEEEE----
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECC----eEeeeeeEECCCcCCccCCEEEEEecCC----
Confidence            478999999999999877430          2389999999842    2246899999999999999999998653    


Q ss_pred             cEEEEEEEecCCCCCCceeEEEEEeCcccccCCC--CCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        191 RTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDP--SPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       191 ~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~--~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      ..|.|+|||++.++++++||++.+++.++.....  ...|++|.+           .|+|+++++|.+.
T Consensus        77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-----------~G~i~l~l~~~~~  134 (136)
T 1gmi_A           77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-----------EGKVYVIIDLSGS  134 (136)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-----------SCEEEEEEEEEEE
T ss_pred             CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC-----------CeEEEEEEEEEec
Confidence            5899999999999999999999999998765432  378999865           2999999999764

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.82  E-value=9.8e-20  Score=147.91  Aligned_cols=123  Identities=20%  Similarity=0.285  Sum_probs=100.8

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      ..|+|+|++|++|+.++.. |.+||||++++.+.+   .+++|+++++++||+|||+|.|.+...+    .|.|+|||++
T Consensus         5 ~~L~V~v~~a~~L~~~d~~-g~sDpyv~v~~~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~----~l~~~v~d~d   76 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKDFF-RLPDPFAKIVVDGSG---QCHSTDTVKNTLDPKWNQHYDLYVGKTD----SITISVWNHK   76 (132)
T ss_dssp             EEEEEEEEEEESCCCCSTT-CCCCEEEEEEETTTC---CEEECCCCSSCSSCEEEEEEEEEEETTC----CEEEEEEEGG
T ss_pred             EEEEEEEEEeECCCCCCCC-CCcCeEEEEEECCCC---ceEECCccCCCCCCCccCEEEEEeCCCC----EEEEEEEECC
Confidence            5799999999999999987 899999999996432   4789999999999999999999986532    4999999999


Q ss_pred             CCCC---CceeEEEEEeCccc-ccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        202 MFGR---NDFLGEVMMSLENK-VFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       202 ~~~~---~~~iG~~~~~l~~~-~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      .+++   +++||++.+++.++ .......+|++|.......  .....|+|.+++++
T Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~--~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           77 KIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSD--TDAVRGQIVVSLQT  131 (132)
T ss_dssp             GTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTC--CCCCCSEEEEEEEE
T ss_pred             CCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCC--CCceeEEEEEEEEc
Confidence            8876   79999999999887 4445556899997642211  13457999999875

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.80  E-value=2e-19  Score=149.03  Aligned_cols=107  Identities=21%  Similarity=0.311  Sum_probs=88.1

Q ss_pred             CCcceEEEEEeccccccccCC-----------CCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcccc
Q psy12482        271 AAKGSLHVLIKEAKSLCPVKS-----------NTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEEL  339 (419)
Q Consensus       271 ~~~~~l~v~v~~a~~L~~~~~-----------~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~  339 (419)
                      ...|.|+|+|++|+||+++|.           +.+||||+|.+    +.....+|+++++|+||+|||.|.|. +..   
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l----~~~~~~kT~v~~ktlnP~WNE~F~f~-v~~---   97 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV----DQVRVGQTSTKQKTNKPTYNEEFCAN-VTD---   97 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEE----TTEEEEECCCCSSCSSCEEEEEEEEE-EEE---
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEE----CCEeeEEeeecCCCCCCccCcEEEEE-cCC---
Confidence            447999999999999998872           26899999999    33455799999999999999999996 532   


Q ss_pred             ccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhC--CCceEEeeeeccC
Q psy12482        340 SERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMER--PNFWVESCIPLRS  409 (419)
Q Consensus       340 ~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~--p~~~i~~w~~l~~  409 (419)
                       ...|.|+|||++.++++++||.+.|++.+                       +...  ++..+.+|++|.+
T Consensus        98 -~~~L~~~V~D~d~~~~dd~iG~~~i~l~~-----------------------l~~~~~~~~~~~~W~~L~~  145 (157)
T 2fk9_A           98 -GGHLELAVFHETPLGYDHFVANCTLQFQE-----------------------LLRTTGASDTFEGWVDLEP  145 (157)
T ss_dssp             -ECEEEEEEEECCSSSSCEEEEEEEEEHHH-----------------------HHHHHTTCSEEEEEEECBS
T ss_pred             -CCEEEEEEEECCCCCCCCEEEEEEEEHHH-----------------------hhcccCCCCcccEEEECCC
Confidence             25699999999999999999999999854                       3433  5567888888865

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.79  E-value=3.9e-19  Score=150.66  Aligned_cols=124  Identities=21%  Similarity=0.230  Sum_probs=100.0

Q ss_pred             cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEe
Q psy12482        120 KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWH  199 (419)
Q Consensus       120 ~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d  199 (419)
                      ..+.|.|+|++|++|+..+.. +.+||||+|++..     .+++|+++++++||+|||+|.|.+..    ...|.|+|||
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~-~~sDPYv~v~~~~-----~~~kT~v~~~tlnP~Wne~f~f~v~~----~~~L~~~V~D  103 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNW-FGPSPYVEVTVDG-----QSKKTEKCNNTNSPKWKQPLTVIVTP----VSKLHFRVWS  103 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--C-CCCCEEEEEEETT-----EEEECCCCSSCSSCEEEEEEEEEECT----TCEEEEEEEE
T ss_pred             CceEEEEEEEEeECCCCcccC-CCCCeEEEEEECC-----EEeEccccCCCCCCeECCEEEEEeCC----CCEEEEEEEE
Confidence            357899999999999944433 4499999999953     47899999999999999999999843    5599999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccCCC-----CCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVFDDP-----SPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~~~~-----~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      ++.++++++||++.++|.++.....     ...|++|.....    .....|+|.++++|.+.
T Consensus       104 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~----~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          104 HQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE----PTETIGDLSICLDGLQL  162 (173)
T ss_dssp             CCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC----TTSEEEEEEEEEESEEC
T ss_pred             CCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC----CCcccEEEEEEEeeeec
Confidence            9999999999999999998754321     256999977522    13456999999999876

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1.9e-19  Score=147.78  Aligned_cols=127  Identities=17%  Similarity=0.204  Sum_probs=98.5

Q ss_pred             CcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCcccc-ccCeEEEEEEE
Q psy12482        272 AKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEEL-SERCLELTVWD  350 (419)
Q Consensus       272 ~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~-~~~~l~i~V~d  350 (419)
                      ..+.|.|+|++|+||+.++.+.+||||++.+..     .+++|+++++++||+|||.|.|. +....+ ....|.|+|||
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~~~~~l~i~V~d   78 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKD-----EKKKTKKVDNELNPVWNEILEFD-LRGIPLDFSSSLGIIVKD   78 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSS-----CEEECCCCCSCSSCEEEEEEEEE-CSSCCCCTTCEEEEEEEE
T ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECC-----EeEEeeeecCCCCCccCcEEEEE-ecccccCCCCEEEEEEEE
Confidence            368999999999999998877889999999853     35999999999999999999996 654333 35779999999


Q ss_pred             CCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCCCC
Q psy12482        351 HDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLE  412 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~~~  412 (419)
                      ++.++++++||++.|++.++........||..        .++.+..+....+-..|+.+..
T Consensus        79 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l--------~~l~~~~~~~~~G~l~l~~~~~  132 (140)
T 2dmh_A           79 FETIGQNKLIGTATVALKDLTGDQSRSLPYKL--------ISLLNEKGQDTGATIDLVIGYD  132 (140)
T ss_dssp             TTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEE--------EEEECTTCCEEEEEEEEEEEEC
T ss_pred             CCCCCCCceEEEEEEEHHHhccCCCceeEEee--------eeccCCCCCCCCCEEEEEEEEE
Confidence            99999999999999999987655554555441        0144444555666666665544

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.78  E-value=6.2e-19  Score=143.87  Aligned_cols=88  Identities=23%  Similarity=0.392  Sum_probs=76.2

Q ss_pred             cceEEEEEeccccccccCCC-C-----------CCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccc
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN-T-----------VDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS  340 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~-~-----------~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~  340 (419)
                      .|.|+|+|++|+||+++|.. .           +||||+|.+    ......+|.++++|+||+|||.|.|. +...   
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l----~~~~~~~T~~~~~t~nP~WnE~f~f~-v~~~---   76 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTNSPAWHDEFVTD-VCNG---   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE----TTEEEEECCCCSSCSSCEEEEEEEEE-EEEE---
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEE----CCeEeeeeeEECCCcCCccCCEEEEE-ecCC---
Confidence            68999999999999988744 3           999999998    33455789999999999999999996 5322   


Q ss_pred             cCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482        341 ERCLELTVWDHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       341 ~~~l~i~V~d~~~~~~~~~lG~~~i~l~~  369 (419)
                       ..|.|+|||++.++++++||.+.|++.+
T Consensus        77 -~~L~~~V~d~d~~~~dd~iG~~~i~l~~  104 (136)
T 1gmi_A           77 -RKIELAVFHDAPIGYDDFVANCTIQFEE  104 (136)
T ss_dssp             -CEEEEEEEECCSSSSCEEEEEEEEEHHH
T ss_pred             -CEEEEEEEeCCCCCCCCEEEEEEEEHHH
Confidence             6699999999999999999999999954

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.75  E-value=3.1e-18  Score=135.80  Aligned_cols=121  Identities=19%  Similarity=0.246  Sum_probs=102.5

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      .-|+|.|.+|.+|+      |.+|||+++.+.     ..++||++++ ++.||+|||.|.|++.........|.|.|+|+
T Consensus        21 msL~V~l~~a~~Lp------g~~Dp~akv~FR-----g~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~   89 (144)
T 3l9b_A           21 MALIVHLKTVSELR------GRADRIAKVTFR-----GQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNY   89 (144)
T ss_dssp             EEEEEEEEEEESCC------SCEEEEEEEEET-----TEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEE
T ss_pred             EEEEEEEEEecCCC------CCCCCeEEEEEe-----ccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEEC
Confidence            46999999999998      578999999994     4579999998 79999999999999887666788999999999


Q ss_pred             CCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCCC
Q psy12482        201 DMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPPE  258 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~  258 (419)
                      +.++++++||++.++|.++...+....+-+|.+.+...     ..++|.++++|.|.+
T Consensus        90 ~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~-----~~a~I~l~l~Y~pp~  142 (144)
T 3l9b_A           90 SKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAI-----IKTSLSMEVRYQAAD  142 (144)
T ss_dssp             CTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCE-----EEEEEEEEEEEEETT
T ss_pred             ccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCc-----cccEEEEEEEecCCC
Confidence            99999999999999999987766555566666554432     228999999999874

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.74  E-value=3.2e-18  Score=137.75  Aligned_cols=105  Identities=19%  Similarity=0.253  Sum_probs=85.4

Q ss_pred             cceEEEEEecccccccc---CCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPV---KSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTV  348 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~---~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V  348 (419)
                      .+.|.|+|++|+||+.+   +.. .+||||++.+.+..  ..+++|+++++++||+|||.|.|. +...  ....|.|+|
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~wne~f~f~-v~~~--~~~~l~i~V   76 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEFI-LDPN--QENVLEITL   76 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEEE-ECTT--SCCEEEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCC--CceEEccccCCCCCCcccceEEEE-ecCC--CCCEEEEEE
Confidence            58999999999999985   444 89999999996432  367899999999999999999996 5332  346799999


Q ss_pred             EECCCCCCCceeEEEEEeCCCCCcCCceeecccCC
Q psy12482        349 WDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSS  383 (419)
Q Consensus       349 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~  383 (419)
                      ||++.++ +++||++.|+|+++..+.....|+.+.
T Consensus        77 ~d~d~~~-~~~iG~~~i~l~~l~~~~~~~~~~~L~  110 (126)
T 1rlw_A           77 MDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFN  110 (126)
T ss_dssp             EECCSSC-CEEEEEEEEEGGGSCTTCEEEEEEEET
T ss_pred             EECCCCC-CceeEEEEEEHHHccCCCcEEEEEEcC
Confidence            9999885 999999999998876555555665543

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.74  E-value=1.1e-17  Score=139.39  Aligned_cols=99  Identities=23%  Similarity=0.382  Sum_probs=79.3

Q ss_pred             CCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCC-CcceeecccccCCCCCccccEEEEcccCccccccCeEEEE
Q psy12482        270 SAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKG-RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELT  347 (419)
Q Consensus       270 ~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~-~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~  347 (419)
                      ....+.|+|+|++|+||+.++.. .+||||+|.+.+... ...+++|+++++++||+|||.|.|. +...   ...|.|+
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~---~~~l~~~   91 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR-VHPQ---QHRLLFE   91 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEE-ECTT---TCEEEEE
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEE-ecCC---CCEEEEE
Confidence            44579999999999999999887 899999999974322 2467899999999999999999996 5432   3569999


Q ss_pred             EEECCCCCCCceeEEEEEeCCCCCc
Q psy12482        348 VWDHDRLTSNEFLGGIRLNLGHGKH  372 (419)
Q Consensus       348 V~d~~~~~~~~~lG~~~i~l~~~~~  372 (419)
                      |||++.++++++||++.|+|.++..
T Consensus        92 V~d~d~~~~d~~iG~~~i~l~~l~~  116 (153)
T 3b7y_A           92 VFDENRLTRDDFLGQVDVPLYPLPT  116 (153)
T ss_dssp             EEECCSSSCCEEEEEEEEECCSCCB
T ss_pred             EEECCCCcCCCeeEEEEEEHHHccc
Confidence            9999999999999999999998643

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.72  E-value=6.8e-18  Score=137.16  Aligned_cols=92  Identities=25%  Similarity=0.448  Sum_probs=80.5

Q ss_pred             CCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEE
Q psy12482        271 AAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVW  349 (419)
Q Consensus       271 ~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~  349 (419)
                      ...+.|.|+|++|++|++++.. .+||||++.+.+     .+++|+++++++||+|||.|.|. +.  +. ...|.|+||
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~-~~--~~-~~~l~i~V~   80 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-----DRLQTHTVYKNLNPEWNKVFTFP-IK--DI-HDVLEVTVF   80 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-----EEEECCCCSSCSSCCCCEEEEEE-ES--CT-TCEEEEEEE
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC-----EEEEeeeecCCCCCccccEEEEE-ec--CC-CCEEEEEEE
Confidence            3479999999999999999977 899999999843     35899999999999999999997 54  22 356999999


Q ss_pred             ECCCCCCCceeEEEEEeCCCCC
Q psy12482        350 DHDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       350 d~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      |++.++++++||++.|++.++.
T Consensus        81 d~d~~~~~~~lG~~~i~l~~l~  102 (133)
T 2ep6_A           81 DEDGDKPPDFLGKVAIPLLSIR  102 (133)
T ss_dssp             EEETTEEEEECCBCEEEGGGCC
T ss_pred             ECCCCCCCCeeEEEEEEHHHcc
Confidence            9999999999999999998853

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.72  E-value=3.1e-17  Score=139.96  Aligned_cols=99  Identities=22%  Similarity=0.362  Sum_probs=77.8

Q ss_pred             CcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCC-CcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEE
Q psy12482        272 AKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKG-RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVW  349 (419)
Q Consensus       272 ~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~-~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~  349 (419)
                      ..+.|+|+|++|++|+.++.. .+||||+|.+..... ...+++|+++++++||+|||.|.|. +...   ...|.|+||
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-v~~~---~~~L~~~V~   81 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR-VLPQ---RHRILFEVF   81 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEE-ECTT---TCEEEEEEE
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEE-EcCC---CCEEEEEEE
Confidence            479999999999999999887 999999999975322 2357899999999999999999996 5532   356999999


Q ss_pred             ECCCCCCCceeEEEEEeCCCCCcCC
Q psy12482        350 DHDRLTSNEFLGGIRLNLGHGKHYS  374 (419)
Q Consensus       350 d~~~~~~~~~lG~~~i~l~~~~~~~  374 (419)
                      |++.++++++||.+.|+|..+...+
T Consensus        82 d~d~~~~d~~lG~~~i~l~~l~~~~  106 (176)
T 3m7f_B           82 DENRLTRDDFLGQVDVPLYPLPTEN  106 (176)
T ss_dssp             ECC----CEEEEEEEEESCSCCBC-
T ss_pred             ECCCCCCCcEEEEEEEEHHHccccC
Confidence            9999999999999999999975543

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.71  E-value=1.1e-17  Score=136.42  Aligned_cols=90  Identities=23%  Similarity=0.398  Sum_probs=79.1

Q ss_pred             CcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeeccccc-CCCCCccccEEEEcccCccccccCeEEEEEE
Q psy12482        272 AKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIK-RSTSPQWNHTVVYRDVSLEELSERCLELTVW  349 (419)
Q Consensus       272 ~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~-~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~  349 (419)
                      ..+.|.|+|++|++|+..+.. .+||||+|.+.+.     +++|++++ ++.||+|||.|.|. +..   ....|.|+||
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~kT~~~~~~~~nP~Wne~f~f~-v~~---~~~~l~~~V~   78 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ-----DQKSNVAEGMGTTPEWNETFIFT-VSE---GTTELKAKIF   78 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSC-----EEECCCCTTCCSSCEEEEEEEEE-EES---SCCEEEEEEC
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECCc-----cceeEeccCCCCCCccCcEEEEE-ECC---CCCEEEEEEE
Confidence            479999999999999999877 8999999998532     47899998 89999999999996 542   4467999999


Q ss_pred             ECCCCCCCceeEEEEEeCCCC
Q psy12482        350 DHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       350 d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      |++.++++++||++.|+|.++
T Consensus        79 d~~~~~~d~~lG~~~i~l~~l   99 (136)
T 1wfj_A           79 DKDVGTEDDAVGEATIPLEPV   99 (136)
T ss_dssp             CSSSCTTTCCSEEEEEESHHH
T ss_pred             ECCCCCCCceEEEEEEEHHHh
Confidence            999999999999999999764

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.70  E-value=6.4e-17  Score=133.92  Aligned_cols=89  Identities=17%  Similarity=0.301  Sum_probs=78.4

Q ss_pred             cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      .+.|.|+|++|+||++++.+ .+||||++.+.     ..+++|+++++++||+|||.|.|. +...   ...|.|+|||+
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~-v~~~---~~~l~~~v~d~   86 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVG-----KTKKRTKTIYGNLNPVWEENFHFE-CHNS---SDRIKVRVLDE   86 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-----TEEEECCCCCSCSSCEEEEEEEEE-ECST---TCEEEEEEEEC
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC-----CEEEECCccCCCCCCCcccEEEEE-ecCC---CCEEEEEEEEC
Confidence            69999999999999999987 99999999982     256899999999999999999996 5432   25699999999


Q ss_pred             CCC-----------CCCceeEEEEEeCCCC
Q psy12482        352 DRL-----------TSNEFLGGIRLNLGHG  370 (419)
Q Consensus       352 ~~~-----------~~~~~lG~~~i~l~~~  370 (419)
                      +..           +++++||++.|+|+++
T Consensus        87 d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l  116 (148)
T 3kwu_A           87 DDDIKSRVKQRFKRESDDFLGQTIIEVRTL  116 (148)
T ss_dssp             CCSHHHHHHTTTSSCSSEEEEEEEEEGGGC
T ss_pred             CCCccccccccccCCCCccEEEEEEEHHHC
Confidence            986           7899999999999874

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.69  E-value=1.4e-16  Score=128.57  Aligned_cols=97  Identities=16%  Similarity=0.246  Sum_probs=75.1

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccc-cCCCCceeccEEEEEcccCcccccEEEEEEEe
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK-KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWH  199 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~-~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d  199 (419)
                      .+.|.|+|++|++|+.   . |.+||||++. .     . ..+|+++ .++.||+|||+|.|.+..   ....|.|+|||
T Consensus         4 ~~~L~V~V~~A~~l~~---~-g~~DPYv~v~-~-----~-~~kt~~~~~~t~nP~WnE~f~f~v~~---~~~~L~~~V~D   69 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA---Q-EKFNTYVTLK-V-----Q-NVKSTTIAVRGSQPSWEQDFMFEINR---LDLGLTVEVWN   69 (131)
T ss_dssp             CEEEEEEEEEEECSSC---G-GGCEEEEEEE-E-----T-TEEEECCCEESSSCEEEEEEEEEECC---CSSEEEEEEEE
T ss_pred             ceEEEEEEEEeECCCC---C-CCcCeEEEEE-e-----c-CEEEeEecCCCCCceECCEEEEEEeC---CCCeEEEEEEE
Confidence            4689999999998853   3 7899999999 2     1 2345544 479999999999999874   23479999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccCC--CCCceecCc
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVFDD--PSPKCYPLQ  232 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~~~--~~~~w~~L~  232 (419)
                      ++ +++|++||++.++|.++....  ....|+++.
T Consensus        70 ~d-~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~  103 (131)
T 2cjt_A           70 KG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD  103 (131)
T ss_dssp             CC-SSCEEEEEEEEEEGGGSCBCSSCCCCEEEECB
T ss_pred             CC-CCCCCeEEEEEEEHHHhhhcCCCCccccEEcc
Confidence            99 889999999999999975443  222455553

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.69  E-value=1.8e-16  Score=134.21  Aligned_cols=88  Identities=23%  Similarity=0.341  Sum_probs=75.6

Q ss_pred             CcceEEEEEeccccccccCC-CCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEE
Q psy12482        272 AKGSLHVLIKEAKSLCPVKS-NTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWD  350 (419)
Q Consensus       272 ~~~~l~v~v~~a~~L~~~~~-~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d  350 (419)
                      ..+.|+|+|++|++|++.+. +.+||||+|.+.    . .+++|+++++++||+|||.|.|. +..    ...|.|+|||
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~----~-~~~kT~v~~~tlnP~Wne~f~f~-v~~----~~~L~~~V~D  103 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVD----G-QSKKTEKCNNTNSPKWKQPLTVI-VTP----VSKLHFRVWS  103 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEET----T-EEEECCCCSSCSSCEEEEEEEEE-ECT----TCEEEEEEEE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEEC----C-EEeEccccCCCCCCeECCEEEEE-eCC----CCEEEEEEEE
Confidence            36899999999999994443 479999999983    2 67899999999999999999996 632    5669999999


Q ss_pred             CCCCCCCceeEEEEEeCCC
Q psy12482        351 HDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~  369 (419)
                      ++.++++++||.+.|+|.+
T Consensus       104 ~d~~~~dd~lG~~~i~l~~  122 (173)
T 2nq3_A          104 HQTLKSDVLLGTAALDIYE  122 (173)
T ss_dssp             CCSSSCCEEEEEEEEEHHH
T ss_pred             CCCCCCCceEEEEEEEHHH
Confidence            9999999999999999965

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.69  E-value=3.7e-17  Score=132.56  Aligned_cols=89  Identities=24%  Similarity=0.380  Sum_probs=76.8

Q ss_pred             cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      ..+|+|+|++|++|++++.. .+||||++.+.+.   ..+++|+++++++||+|||.|.|. +...    ..|.|+|||+
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~---~~~~kT~v~~~t~nP~wne~f~f~-v~~~----~~l~~~v~d~   75 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS---GQCHSTDTVKNTLDPKWNQHYDLY-VGKT----DSITISVWNH   75 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT---CCEEECCCCSSCSSCEEEEEEEEE-EETT----CCEEEEEEEG
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC---CceEECCccCCCCCCCccCEEEEE-eCCC----CEEEEEEEEC
Confidence            57899999999999999987 8999999998532   367899999999999999999996 5332    2499999999


Q ss_pred             CCCCC---CceeEEEEEeCCC
Q psy12482        352 DRLTS---NEFLGGIRLNLGH  369 (419)
Q Consensus       352 ~~~~~---~~~lG~~~i~l~~  369 (419)
                      +.+++   +++||++.|++..
T Consensus        76 d~~~~~~~d~~lG~~~i~l~~   96 (132)
T 3pyc_A           76 KKIHKKQGAGFLGCVRLLSNA   96 (132)
T ss_dssp             GGTTSSTTTTEEEEEEECHHH
T ss_pred             CCCCCCCCCCceEEEEEeHHH
Confidence            99876   8999999998854

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.63  E-value=7.7e-16  Score=153.73  Aligned_cols=119  Identities=23%  Similarity=0.390  Sum_probs=100.5

Q ss_pred             cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEe
Q psy12482        120 KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWH  199 (419)
Q Consensus       120 ~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d  199 (419)
                      ..+.|.|+|++|++|++.+.. |.+||||++++.     ..+++|+++++++||+|||+|.|.+...  ....|.|+|||
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~-~~sdpyv~v~~~-----~~~~~T~~~~~t~nP~w~e~f~f~~~~~--~~~~l~~~v~d  456 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPN-GKSNPYCEISMG-----SQSYTTRTIQDTLNPKWNFNCQFFIKDL--YQDVLCLTLFD  456 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTT-SCCCEEEEEEET-----TEEEECCCCSSCSSCEEEEEEEEEESCT--TTCEEEEEEEE
T ss_pred             CCceEEEEeceeecCCCCCCC-CCCCeEEEEEEC-----CeeccCCccCCCCCCccCceEEEEecCC--CCCEEEEEEEe
Confidence            457899999999999999987 899999999994     3478999999999999999999998543  44589999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccCC----CCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVFDD----PSPKCYPLQERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~~~----~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      ++.++++++||++.+++.++..+.    +...|++|...         ..|+|.+.+.+.
T Consensus       457 ~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~---------~~G~i~l~~~l~  507 (510)
T 3jzy_A          457 RDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV---------PTGEVWVRFDLQ  507 (510)
T ss_dssp             CCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS---------SSCEEEEEEEEE
T ss_pred             CCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC---------CCceEEEEEEEE
Confidence            999999999999999999876533    36789998754         239998887663

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.62  E-value=3e-15  Score=125.63  Aligned_cols=88  Identities=16%  Similarity=0.257  Sum_probs=71.8

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEcccCcccccEEEEEEEe
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTLEDLECRTLWLSVWH  199 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d  199 (419)
                      .+.|+|+|++|++|+.   . +.+||||+|. .     . ..+|++++ ++.||+|||+|.|.+..   ....|.|+|||
T Consensus        13 ~~~L~V~V~~A~~l~~---~-g~~DPYV~v~-~-----~-~~kt~~~~~~t~nP~WnE~f~f~v~~---~~~~L~~~V~D   78 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGA---Q-EKFNTYVTLK-V-----Q-NVESTTIAVRGSQPSWEQDFMFEINR---LDLGLTVEVWN   78 (167)
T ss_dssp             CCEEEEEEEEEECSSC---G-GGCEEEEEEE-E-----T-TEEEECCCEESSSCEEEEEEEEECCC---TTSEEEEEEEE
T ss_pred             eEEEEEEEEEEECCCC---C-CCCCeEEEEE-e-----c-ceEEEEecCCCCCCCCCCEEEEEeeC---CCCEEEEEEEE
Confidence            4689999999998852   3 7899999999 2     1 24566555 69999999999999874   23479999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccCC
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVFDD  223 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~~~  223 (419)
                      ++ +++|++||++.|+|.++....
T Consensus        79 ~d-~~~dd~iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           79 KG-LIWDTMVGTVWIPLRTIRQSN  101 (167)
T ss_dssp             CC-SSCCEEEEEEEEEGGGSCBCS
T ss_pred             CC-CCCCceEEEEEEEHHHhcccC
Confidence            99 889999999999999975443

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.60  E-value=2.9e-15  Score=147.78  Aligned_cols=110  Identities=20%  Similarity=0.255  Sum_probs=89.4

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      .+.|+|+|++|++|+. |.. |.+||||+|++.     ..+++|+++++++||+|||+|.|.+.... ....|.|+|||+
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~-g~sDPYV~v~l~-----~~~~kTkvik~tlNP~Wne~f~f~~~~~~-~~~~L~~~V~D~  464 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYT-TATDAYLKVFFG-----GQEFRTGVVWNNNNPRWTDKMDFENVLLS-TGGPLRVQVWDA  464 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSC-SCCCEEEEEEET-----TEEEECCCBCSCSSCBCCCCEEEEEEETT-TCCCEEEEEEEC
T ss_pred             ccEEEEEEEEccCCCc-ccC-CCcCeEEEEEEC-----CEeeeeeeecCCCCCCCCeEEEEEEecCC-CCCEEEEEEEEC
Confidence            3689999999999998 877 899999999996     23689999999999999999999853211 345899999999


Q ss_pred             CCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        201 DMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      |..++|++||++.++|..    .....|++|..            |+|++++..
T Consensus       465 D~~~~dD~LG~~~~~L~~----g~~~~~~~l~~------------G~l~~~~~~  502 (540)
T 3nsj_A          465 DYGWDDDLLGSCDRSPHS----GFHEVTCELNH------------GRVKFSYHA  502 (540)
T ss_dssp             CSSSCCEEEEEEEECCCS----EEEEEEEECSS------------SEEEEEEEE
T ss_pred             CCCCCCCEEEEEEEEeeC----CcEEEEEEcCC------------eEEEEEEEE
Confidence            999899999999999873    22456776543            888776654

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.60  E-value=4.7e-15  Score=149.63  Aligned_cols=125  Identities=20%  Similarity=0.292  Sum_probs=99.6

Q ss_pred             CCEEEEEEEeecCCCCCCC--CCCCCCcEEEEEEeCCCCCCCeeecccccCC-CCceeccEEEEEcccCcccccEEEEEE
Q psy12482        121 QGALEIHVKQCKDLAPVDT--KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHT-LSPVFDEVLKFQLTLEDLECRTLWLSV  197 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~l~~~~l~i~v  197 (419)
                      .+.|+|.|++|++|+..+.  . +.+||||+|.+.+......++||++++++ .||+|||+|.|.+...++.  .|+|.|
T Consensus       496 ~~~L~V~Vi~A~~L~~~d~~~~-~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~--~L~~~V  572 (624)
T 1djx_A          496 PERLRVRIISGQQLPKVNKNKN-SIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLA--LVRFMV  572 (624)
T ss_dssp             CEEEEEEEEEEESCCCCSSCSS-SCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGC--EEEEEE
T ss_pred             ceEEEEEEEEcCCCCccccccc-CCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCC--EEEEEE
Confidence            5689999999999998873  4 78999999999753323347899999987 9999999999998776654  899999


Q ss_pred             EecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482        198 WHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       198 ~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      ||++.++++++||++.++|..+..+   ..|++|.......    -..|.|.+.+.|.
T Consensus       573 ~D~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~g~~----~~~~~L~v~i~~~  623 (624)
T 1djx_A          573 EDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQ----HPSATLFVKISIQ  623 (624)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCE----EEEEEEEEEEEEE
T ss_pred             EEcCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCCcCC----CCceEEEEEEEEE
Confidence            9999999999999999999987543   2588886543321    1236777777763

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.60  E-value=2.6e-15  Score=121.11  Aligned_cols=86  Identities=20%  Similarity=0.393  Sum_probs=68.5

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccc-cCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGII-KRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~-~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      .+.|.|+|++|++|+.  .+.+||||+|. . +    . .+|.++ .+++||+|||.|.|. +..  . ...|.|+|||+
T Consensus         4 ~~~L~V~V~~A~~l~~--~g~~DPYv~v~-~-~----~-~kt~~~~~~t~nP~WnE~f~f~-v~~--~-~~~L~~~V~D~   70 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA--QEKFNTYVTLK-V-Q----N-VKSTTIAVRGSQPSWEQDFMFE-INR--L-DLGLTVEVWNK   70 (131)
T ss_dssp             CEEEEEEEEEEECSSC--GGGCEEEEEEE-E-T----T-EEEECCCEESSSCEEEEEEEEE-ECC--C-SSEEEEEEEEC
T ss_pred             ceEEEEEEEEeECCCC--CCCcCeEEEEE-e-c----C-EEEeEecCCCCCceECCEEEEE-EeC--C-CCeEEEEEEEC
Confidence            5899999999999853  23789999999 2 1    1 344444 469999999999996 652  2 34599999999


Q ss_pred             CCCCCCceeEEEEEeCCCCCc
Q psy12482        352 DRLTSNEFLGGIRLNLGHGKH  372 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~~~~  372 (419)
                      + +++|++||++.|+|.++..
T Consensus        71 d-~~~dd~iG~~~i~l~~l~~   90 (131)
T 2cjt_A           71 G-LIWDTMVGTVWIPLRTIRQ   90 (131)
T ss_dssp             C-SSCEEEEEEEEEEGGGSCB
T ss_pred             C-CCCCCeEEEEEEEHHHhhh
Confidence            9 8899999999999988643

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.57  E-value=2.5e-15  Score=152.76  Aligned_cols=109  Identities=15%  Similarity=0.323  Sum_probs=95.2

Q ss_pred             cCCEEEEEEEeecCCCC---CCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEE
Q psy12482        120 KQGALEIHVKQCKDLAP---VDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLS  196 (419)
Q Consensus       120 ~~~~L~v~v~~a~~L~~---~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~  196 (419)
                      ..+.|+|+|++|++|+.   ++.. |.+||||+|++.+..  ..++||+++++++||+|||+|.|.+...  ....|.|+
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~-g~sDPYV~V~l~~~~--~~k~kTkvik~tlNPvWNEtF~F~v~~~--~~~~L~~~   90 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDML-DTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEFILDPN--QENVLEIT   90 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHH-CCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEEEECTT--SCCBCEEE
T ss_pred             CccEEEEEEEEEECCCCccccCCC-CCcCeEEEEEEecCC--CCeEecceEcCCCCCeeeeEEEEEecCC--CCCEEEEE
Confidence            46789999999999998   7766 889999999997543  2478999999999999999999998754  34489999


Q ss_pred             EEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        197 VWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       197 v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      |||++.++ +++||++.++|.++..+.....|++|.+.
T Consensus        91 V~D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           91 LMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             EEECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             EEECCCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            99999998 99999999999998877778899999765

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.55  E-value=1.5e-14  Score=148.66  Aligned_cols=123  Identities=30%  Similarity=0.541  Sum_probs=107.1

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      .+|.|.+++.|.  .+.|.|.|++|++|++++.. |.+||||++.+.+++....+++|+++++++||+|||+|.|.+...
T Consensus       159 ~~g~i~~~~~~~--~~~L~V~v~~a~~L~~~d~~-g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~  235 (674)
T 3pfq_A          159 RRGRIYIQAHID--REVLIVVVRDAKNLVPMDPN-GLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES  235 (674)
T ss_dssp             CSCEEEEEEEEC--SSEEEEEEEEEESCCCCSTT-SSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCST
T ss_pred             ccccccccceec--cceeeeeeecccccCCCCcc-cccCcccccccccCccccccccccccccccCCCccceeeeecccC
Confidence            478888888775  68999999999999999987 899999999999877666789999999999999999999998765


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      +. ...|.|+|||++..+++++||++.+++.++... ....|+.|...
T Consensus       236 ~~-~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~-~~~~w~~Lls~  281 (674)
T 3pfq_A          236 DK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQ  281 (674)
T ss_dssp             TT-TCEEEEEEEECCSSSCCEECCBCCCBTTHHHHC-CEEEEEECBCT
T ss_pred             Cc-cceeeeEEeecccccccccccccccchhhhccC-Ccccceeeccc
Confidence            53 347999999999999999999999999987554 45889988654

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.55  E-value=1.2e-14  Score=146.63  Aligned_cols=110  Identities=21%  Similarity=0.309  Sum_probs=89.8

Q ss_pred             CcceEEEEEeccccccccCC--C-CCCcEEEEEEeCCCCCcceeecccccCC-CCCccccEEEEcccCccccccCeEEEE
Q psy12482        272 AKGSLHVLIKEAKSLCPVKS--N-TVDAFCKAYLLPDKGRASKHKTGIIKRS-TSPQWNHTVVYRDVSLEELSERCLELT  347 (419)
Q Consensus       272 ~~~~l~v~v~~a~~L~~~~~--~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t-~nP~wne~f~f~~v~~~~~~~~~l~i~  347 (419)
                      ..+.|.|+|++|++|+.++.  + .+||||+|.+.+......+++|++++++ +||+|||+|.|. +...++  ..|.|+
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~-v~~~el--~~L~~~  571 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE-VTVPDL--ALVRFM  571 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEE-ESCGGG--CEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEE-EecCCC--CEEEEE
Confidence            46899999999999999883  4 8999999999754334467899999997 999999999996 665555  579999


Q ss_pred             EEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCc
Q psy12482        348 VWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSG  384 (419)
Q Consensus       348 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g  384 (419)
                      |||+|.++++++||++.|+|..+..+.+..++++..|
T Consensus       572 V~D~D~~~~dd~iG~~~ipl~~L~~G~r~v~L~d~~g  608 (624)
T 1djx_A          572 VEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNG  608 (624)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGGBCCEEEEEEEECTTS
T ss_pred             EEEcCCCCCCceeEEEEEEHHHcCCCcEEEeCCCCCc
Confidence            9999999999999999999998765544444444433

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.55  E-value=9.9e-16  Score=121.50  Aligned_cols=88  Identities=18%  Similarity=0.293  Sum_probs=78.7

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeeccccc-CCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIK-RSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~-~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      -..|+|.|.+|.||+.    ++|||+++.+     +..+++|+++. ++.||+|||.|.|+ +.........|.|.|+|+
T Consensus        20 ~msL~V~l~~a~~Lpg----~~Dp~akv~F-----Rg~k~kTkvi~~~~~npvfnE~F~wp-l~~~ld~~e~L~v~V~d~   89 (144)
T 3l9b_A           20 HMALIVHLKTVSELRG----RADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWP-VASSIDRNEVLEIQIFNY   89 (144)
T ss_dssp             CEEEEEEEEEEESCCS----CEEEEEEEEE-----TTEEEECCCEEEECSCEEEEEEEEEE-ESSCCCTTCEEEEEEEEE
T ss_pred             cEEEEEEEEEecCCCC----CCCCeEEEEE-----eccceeeEEeccCCCCceEcceEEec-CCCCCCCCCEEEEEEEEC
Confidence            4689999999999994    7899999998     45789999998 69999999999997 766666778899999999


Q ss_pred             CCCCCCceeEEEEEeCCCC
Q psy12482        352 DRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~~  370 (419)
                      +.++++++||.+.|+|.++
T Consensus        90 ~~v~~nrlIG~~~i~Lq~l  108 (144)
T 3l9b_A           90 SKVFSNKLIGTFRMVLQKV  108 (144)
T ss_dssp             CTTSCCEEEEEEEEESHHH
T ss_pred             ccccCCCEEEEEEEEhHHh
Confidence            9999999999999999664

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.52  E-value=2.9e-14  Score=119.64  Aligned_cols=87  Identities=18%  Similarity=0.376  Sum_probs=69.5

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeeccccc-CCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIK-RSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~-~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      .+.|.|+|++|++|+.  .+.+||||+|. . +     ..+|++++ +++||+|||.|.|. +..  . ...|.|+|||+
T Consensus        13 ~~~L~V~V~~A~~l~~--~g~~DPYV~v~-~-~-----~~kt~~~~~~t~nP~WnE~f~f~-v~~--~-~~~L~~~V~D~   79 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGA--QEKFNTYVTLK-V-Q-----NVESTTIAVRGSQPSWEQDFMFE-INR--L-DLGLTVEVWNK   79 (167)
T ss_dssp             CCEEEEEEEEEECSSC--GGGCEEEEEEE-E-T-----TEEEECCCEESSSCEEEEEEEEE-CCC--T-TSEEEEEEEEC
T ss_pred             eEEEEEEEEEEECCCC--CCCCCeEEEEE-e-c-----ceEEEEecCCCCCCCCCCEEEEE-eeC--C-CCEEEEEEEEC
Confidence            5799999999998842  23789999999 1 1     14555554 69999999999996 542  2 34599999999


Q ss_pred             CCCCCCceeEEEEEeCCCCCcC
Q psy12482        352 DRLTSNEFLGGIRLNLGHGKHY  373 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~~~~~  373 (419)
                      | +++|++||++.|+|.++...
T Consensus        80 d-~~~dd~iG~~~i~L~~l~~~  100 (167)
T 2cjs_A           80 G-LIWDTMVGTVWIPLRTIRQS  100 (167)
T ss_dssp             C-SSCCEEEEEEEEEGGGSCBC
T ss_pred             C-CCCCceEEEEEEEHHHhccc
Confidence            9 88899999999999987543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.51  E-value=3.3e-14  Score=140.27  Aligned_cols=91  Identities=21%  Similarity=0.330  Sum_probs=77.1

Q ss_pred             CCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEE
Q psy12482        271 AAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVW  349 (419)
Q Consensus       271 ~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~  349 (419)
                      ...+.|.|+|++|+||+. |.. ++||||+|.+.    . .+++|+++++++||+|||.|.|. +.. ......|.|+||
T Consensus       391 ~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~----~-~~~kTkvik~tlNP~Wne~f~f~-~~~-~~~~~~L~~~V~  462 (540)
T 3nsj_A          391 RGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFG----G-QEFRTGVVWNNNNPRWTDKMDFE-NVL-LSTGGPLRVQVW  462 (540)
T ss_dssp             TTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEET----T-EEEECCCBCSCSSCBCCCCEEEE-EEE-TTTCCCEEEEEE
T ss_pred             CcccEEEEEEEEccCCCc-ccCCCcCeEEEEEEC----C-EeeeeeeecCCCCCCCCeEEEEE-Eec-CCCCCEEEEEEE
Confidence            346899999999999998 877 99999999994    2 35999999999999999999996 321 113456999999


Q ss_pred             ECCCCCCCceeEEEEEeCCC
Q psy12482        350 DHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       350 d~~~~~~~~~lG~~~i~l~~  369 (419)
                      |+|..++|++||.+.++|..
T Consensus       463 D~D~~~~dD~LG~~~~~L~~  482 (540)
T 3nsj_A          463 DADYGWDDDLLGSCDRSPHS  482 (540)
T ss_dssp             ECCSSSCCEEEEEEEECCCS
T ss_pred             ECCCCCCCCEEEEEEEEeeC
Confidence            99999999999999999863

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.51  E-value=1.2e-14  Score=147.84  Aligned_cols=106  Identities=19%  Similarity=0.244  Sum_probs=88.6

Q ss_pred             CcceEEEEEeccccccc---cCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEE
Q psy12482        272 AKGSLHVLIKEAKSLCP---VKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELT  347 (419)
Q Consensus       272 ~~~~l~v~v~~a~~L~~---~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~  347 (419)
                      ..+.|.|+|++|++|+.   +|.. .+||||+|.+.+..  ..+++|+++++++||+|||+|.|. +...  ....|.|+
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~--~~k~kTkvik~tlNPvWNEtF~F~-v~~~--~~~~L~~~   90 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEFI-LDPN--QENVLEIT   90 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEEE-ECTT--SCCBCEEE
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCC--CCeEecceEcCCCCCeeeeEEEEE-ecCC--CCCEEEEE
Confidence            36899999999999998   7766 89999999986432  367899999999999999999996 5432  34569999


Q ss_pred             EEECCCCCCCceeEEEEEeCCCCCcCCceeecccCC
Q psy12482        348 VWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSS  383 (419)
Q Consensus       348 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~  383 (419)
                      |||+|.++ +++||++.|+|.++........|+.+.
T Consensus        91 V~D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~  125 (749)
T 1cjy_A           91 LMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFN  125 (749)
T ss_dssp             EEECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred             EEECCCCC-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence            99999999 999999999999976665566666654

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.49  E-value=2.4e-14  Score=142.88  Aligned_cols=92  Identities=25%  Similarity=0.490  Sum_probs=79.8

Q ss_pred             CCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEE
Q psy12482        271 AAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVW  349 (419)
Q Consensus       271 ~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~  349 (419)
                      ...+.|.|+|++|+||+++|.+ .+||||+|.+.     ..+++|+++++++||+|||.|.|. +.  ......|.|+||
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~-----~~~~~T~~~~~t~nP~w~e~f~f~-~~--~~~~~~l~~~v~  455 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMG-----SQSYTTRTIQDTLNPKWNFNCQFF-IK--DLYQDVLCLTLF  455 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-----TEEEECCCCSSCSSCEEEEEEEEE-ES--CTTTCEEEEEEE
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEEC-----CeeccCCccCCCCCCccCceEEEE-ec--CCCCCEEEEEEE
Confidence            3468999999999999999987 99999999983     246899999999999999999996 43  444467999999


Q ss_pred             ECCCCCCCceeEEEEEeCCCC
Q psy12482        350 DHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       350 d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      |+|.++++++||.+.++++.+
T Consensus       456 d~d~~~~~d~lG~~~~~l~~l  476 (510)
T 3jzy_A          456 DRDQFSPDDFLGRTEIPVAKI  476 (510)
T ss_dssp             ECCSSSSCCEEEEEEEEHHHH
T ss_pred             eCCCCCCCCceEEEEEEHHHh
Confidence            999999999999999999763

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.48  E-value=6.5e-14  Score=144.01  Aligned_cols=120  Identities=28%  Similarity=0.570  Sum_probs=101.5

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST  321 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~  321 (419)
                      ..+|.|.+++.+.                 .+.|.|+|.+|++|++++.+ .+||||++.+.+......+++|+++++++
T Consensus       158 ~~~g~i~~~~~~~-----------------~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tl  220 (674)
T 3pfq_A          158 ERRGRIYIQAHID-----------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSL  220 (674)
T ss_dssp             CCSCEEEEEEEEC-----------------SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCS
T ss_pred             cccccccccceec-----------------cceeeeeeecccccCCCCcccccCcccccccccCcccccccccccccccc
Confidence            4568888888764                 47899999999999999988 99999999998876677789999999999


Q ss_pred             CCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccC
Q psy12482        322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDS  382 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~  382 (419)
                      ||+|||.|.|. +...+. ...|.|+|||+|..+++++||.+.++++++...+ ...|+..
T Consensus       221 nP~wne~f~f~-~~~~~~-~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~L  278 (674)
T 3pfq_A          221 NPEWNETFRFQ-LKESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKL  278 (674)
T ss_dssp             SCEEEEEEEEE-CCSTTT-TCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEEC
T ss_pred             CCCccceeeee-cccCCc-cceeeeEEeecccccccccccccccchhhhccCC-cccceee
Confidence            99999999996 654443 3459999999999999999999999998875543 3566654

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.44  E-value=6.8e-15  Score=144.76  Aligned_cols=125  Identities=14%  Similarity=0.191  Sum_probs=21.2

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCC---CCceeccEEEEEcccCcccccEEEEEE
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHT---LSPVFDEVLKFQLTLEDLECRTLWLSV  197 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t---~nP~wne~f~f~v~~~~l~~~~l~i~v  197 (419)
                      .+.|+|+|++|++|++++      ||||++++..    ....||+++++|   .||+|||+|.|.+...   ...|.|+|
T Consensus        10 ~~~L~V~VieAk~L~~~d------dpYv~v~l~~----~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~---~~~L~v~V   76 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK------RYYCELCLDD----MLYARTTSKPRSASGDTVFWGEHFEFNNLPA---VRALRLHL   76 (483)
T ss_dssp             EECC-------------------------------------------------------CCEECC---------------
T ss_pred             ccEEEEEEEEcCCcCCCC------CCeEEEEECC----eEEeeeeEEeCCCCCCCCccccEEEEecCCC---ccEEEEEE
Confidence            367999999999998764      8999999953    124689999999   9999999999986433   25899999


Q ss_pred             Eec-C---CCCCCceeEEEEEeCcccccCCCCCceecCccccchh------------------hhhhccccceEEEEEEe
Q psy12482        198 WHS-D---MFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEIL------------------DELICSKGELIIGLKFV  255 (419)
Q Consensus       198 ~d~-~---~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~------------------~~~~~~~G~l~l~l~~~  255 (419)
                      ||. +   ..+++++||++.|++.++..+.....|++|.......                  .......|.|++.+.|.
T Consensus        77 ~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~  156 (483)
T 3bxj_A           77 YRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQ  156 (483)
T ss_dssp             ------------------------------CCEECC--------------------------------------CEEEEE
T ss_pred             EecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEee
Confidence            994 4   3678999999999999988777888999995433210                  00123459999999998


Q ss_pred             CCC
Q psy12482        256 PPE  258 (419)
Q Consensus       256 ~~~  258 (419)
                      +..
T Consensus       157 ~~~  159 (483)
T 3bxj_A          157 TMS  159 (483)
T ss_dssp             ECC
T ss_pred             eee
Confidence            753

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.32  E-value=1.4e-13  Score=135.39  Aligned_cols=100  Identities=19%  Similarity=0.284  Sum_probs=12.9

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCC---CCCccccEEEEcccCccccccCeEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRS---TSPQWNHTVVYRDVSLEELSERCLELTVW  349 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t---~nP~wne~f~f~~v~~~~~~~~~l~i~V~  349 (419)
                      .+.|+|+|++|+||++++    ||||++.+.    +..+.||+++++|   +||+|||.|.|. +... .  ..|.|+||
T Consensus        10 ~~~L~V~VieAk~L~~~d----dpYv~v~l~----~~~~~kT~v~~kt~~glnP~WnE~F~f~-~~~~-~--~~L~v~V~   77 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK----RYYCELCLD----DMLYARTTSKPRSASGDTVFWGEHFEFN-NLPA-V--RALRLHLY   77 (483)
T ss_dssp             EECC-----------------------------------------------------CCEECC-----------------
T ss_pred             ccEEEEEEEEcCCcCCCC----CCeEEEEEC----CeEEeeeeEEeCCCCCCCCccccEEEEe-cCCC-c--cEEEEEEE
Confidence            578999999999999876    999999983    3345799999999   999999999996 4222 2  56999999


Q ss_pred             E-CC---CCCCCceeEEEEEeCCCCCcCCceeecccCCc
Q psy12482        350 D-HD---RLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSG  384 (419)
Q Consensus       350 d-~~---~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g  384 (419)
                      | ++   ..+++++||.+.|+++.+..++....||.+.+
T Consensus        78 d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~  116 (483)
T 3bxj_A           78 RDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL  116 (483)
T ss_dssp             -----------------------------CCEECC----
T ss_pred             ecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence            9 45   36789999999999999876666667777644

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.26  E-value=1.7e-11  Score=126.12  Aligned_cols=104  Identities=20%  Similarity=0.325  Sum_probs=84.4

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCC--cceeecccccC-CCCCccccE-EEEcccCccccccCeEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGR--ASKHKTGIIKR-STSPQWNHT-VVYRDVSLEELSERCLELTV  348 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~--~~~~~T~~~~~-t~nP~wne~-f~f~~v~~~~~~~~~l~i~V  348 (419)
                      .+.|.|+|+.|++|+..   .+||||+|.+.+....  ..+++|+++++ ++||+|||. |.|..+...++  ..|.|+|
T Consensus       649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~V  723 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRIIV  723 (816)
T ss_dssp             CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEEE
Confidence            47899999999999753   5899999999753222  25679999986 599999998 99952555555  5799999


Q ss_pred             EECCCCCCCceeEEEEEeCCCCCcCCceeecccCCch
Q psy12482        349 WDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGK  385 (419)
Q Consensus       349 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~  385 (419)
                      ||++    +++||++.|+|+.+..+.+..++++..|.
T Consensus       724 ~D~d----ddfiG~~~ipL~~L~~GyR~vpL~~~~g~  756 (816)
T 3qr0_A          724 SEEN----GKFIGHRVMPLDGIKPGYRHVPLRNESNR  756 (816)
T ss_dssp             EETT----SCEEEEEEEESTTCCCEEEEEEEECTTSC
T ss_pred             EecC----CCeeeEEEEEHHHcCCcceEEEEeCCCCC
Confidence            9985    78999999999999888888888777664

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.24  E-value=2.4e-11  Score=125.56  Aligned_cols=104  Identities=16%  Similarity=0.238  Sum_probs=83.3

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCC-CcceeecccccC-CCCCcccc-EEEEcccCccccccCeEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKG-RASKHKTGIIKR-STSPQWNH-TVVYRDVSLEELSERCLELTVW  349 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~-~~~~~~T~~~~~-t~nP~wne-~f~f~~v~~~~~~~~~l~i~V~  349 (419)
                      ...|.|+|++|++|+..   .+||||+|.+.+... ...+++|+++++ ++||+||| +|.|..+...++  ..|.|+||
T Consensus       724 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~  798 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAF  798 (885)
T ss_dssp             CEEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEE
Confidence            35899999999999853   589999999975321 223579999986 59999999 699952444555  57999999


Q ss_pred             ECCCCCCCceeEEEEEeCCCCCcCCceeecccCCch
Q psy12482        350 DHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGK  385 (419)
Q Consensus       350 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~  385 (419)
                      |++    +++||++.|+|+.+..+.+..++++..|.
T Consensus       799 D~d----ddfiG~~~lpL~~L~~GyR~vpL~~~~g~  830 (885)
T 3ohm_B          799 EEG----GKFVGHRILPVSAIRSGYHYVCLRNEANQ  830 (885)
T ss_dssp             ETT----TEEEEEEEEETTTCCCEEEEEEEECTTSC
T ss_pred             cCC----ccEEeeEEEEHHHcCCCceEEEecCCCCC
Confidence            987    79999999999999888887788777664

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.23  E-value=2.6e-11  Score=125.33  Aligned_cols=103  Identities=18%  Similarity=0.293  Sum_probs=81.6

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCC-Ccceeecc-cccC-CCCCcccc-EEEE-cccCccccccCeEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKG-RASKHKTG-IIKR-STSPQWNH-TVVY-RDVSLEELSERCLELT  347 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~-~~~~~~T~-~~~~-t~nP~wne-~f~f-~~v~~~~~~~~~l~i~  347 (419)
                      .+.|.|+|++|++|+.   ..+||||+|.+.+... ...+++|+ ++++ ++||+||| +|.| . +..+++  ..|.|.
T Consensus       677 ~~~L~V~Visa~~L~~---~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~-v~~~el--~~Lr~~  750 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE---RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEK-ILMPEL--ASLRVA  750 (799)
T ss_dssp             CEEEEEEEEEEESCCS---SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEE-ESSGGG--CEEEEE
T ss_pred             eeeEEEEEEeccccCc---cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEE-EccCCc--cEEEEE
Confidence            5789999999999985   2589999999975322 22357898 7765 69999999 7999 6 666666  479999


Q ss_pred             EEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCch
Q psy12482        348 VWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGK  385 (419)
Q Consensus       348 V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~  385 (419)
                      |||++    +++||++.|+|+.+..+.+..++++..|.
T Consensus       751 V~D~d----~d~iG~~~ipl~~L~~G~r~v~L~~~~g~  784 (799)
T 2zkm_X          751 VMEEG----NKFLGHRIIPINALNSGYHHLCLHSESNM  784 (799)
T ss_dssp             EEETT----TEEEEEEEEEGGGBCCEEEEEEEECTTCC
T ss_pred             EEEeC----CCccceEeeehhhcCCCcEEEeccCCCCC
Confidence            99986    79999999999998776666666665553

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.21  E-value=6.8e-11  Score=122.27  Aligned_cols=118  Identities=19%  Similarity=0.279  Sum_probs=88.2

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCC-CCCCeeecccccC-CCCceecc-EEEEE-cccCcccccEEEEEE
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK-SKAGKRKTRVKKH-TLSPVFDE-VLKFQ-LTLEDLECRTLWLSV  197 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~-~~~~~~kT~~~~~-t~nP~wne-~f~f~-v~~~~l~~~~l~i~v  197 (419)
                      ..|.|.|++|++|+.     ..+||||+|.+.+.. ....+++|+++++ +.||+||| +|.|. |...++.  .|+|.|
T Consensus       725 ~~L~V~Visaq~L~~-----~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela--~Lrf~V  797 (885)
T 3ohm_B          725 NALRVKVISGQFLSD-----RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLA--SLRIAA  797 (885)
T ss_dssp             EEEEEEEEEEESCCS-----SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGC--EEEEEE
T ss_pred             eEEEEEEEEeccCcc-----cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcC--EEEEEE
Confidence            379999999999984     357999999997421 1123579999875 69999999 69998 7666555  899999


Q ss_pred             EecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        198 WHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       198 ~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      ||++    +++||++.++|..+..+   -.+.+|.......    -..|.|.+.+.+...
T Consensus       798 ~D~d----ddfiG~~~lpL~~L~~G---yR~vpL~~~~g~~----l~~atLfv~i~~~~~  846 (885)
T 3ohm_B          798 FEEG----GKFVGHRILPVSAIRSG---YHYVCLRNEANQP----LCLPALLIYTEASDY  846 (885)
T ss_dssp             EETT----TEEEEEEEEETTTCCCE---EEEEEEECTTSCE----EEEEEEEEEEEEEEC
T ss_pred             EcCC----ccEEeeEEEEHHHcCCC---ceEEEecCCCCCc----cCceEEEEEEEEEec
Confidence            9986    79999999999987543   2356775543321    123788888887643

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.20  E-value=8.3e-11  Score=121.60  Aligned_cols=116  Identities=22%  Similarity=0.322  Sum_probs=85.5

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCC-CCCCeeecc-ccc-CCCCceecc-EEEE-EcccCcccccEEEE
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK-SKAGKRKTR-VKK-HTLSPVFDE-VLKF-QLTLEDLECRTLWL  195 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~-~~~~~~kT~-~~~-~t~nP~wne-~f~f-~v~~~~l~~~~l~i  195 (419)
                      .+.|.|.|++|++|+.     +.+||||+|.+.+.. ...+++||+ +++ ++.||+||| +|.| .|...++.  .|+|
T Consensus       677 ~~~L~V~Visa~~L~~-----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~--~Lr~  749 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE-----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELA--SLRV  749 (799)
T ss_dssp             CEEEEEEEEEEESCCS-----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGC--EEEE
T ss_pred             eeeEEEEEEeccccCc-----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCcc--EEEE
Confidence            4589999999999984     457999999997421 112357899 776 579999999 7999 78776666  8999


Q ss_pred             EEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        196 SVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       196 ~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      .|||++    +++||++.++|..+..+   -.|++|.......    -..+.|.+.+.+
T Consensus       750 ~V~D~d----~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~----~~~~~Lfv~i~~  797 (799)
T 2zkm_X          750 AVMEEG----NKFLGHRIIPINALNSG---YHHLCLHSESNMP----LTMPALFIFLEM  797 (799)
T ss_dssp             EEEETT----TEEEEEEEEEGGGBCCE---EEEEEEECTTCCE----EEEEEEEEEEEE
T ss_pred             EEEEeC----CCccceEeeehhhcCCC---cEEEeccCCCCCC----CCceEEEEEEEE
Confidence            999986    79999999999987532   3467775543211    112566666655

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.19  E-value=8.4e-11  Score=120.91  Aligned_cols=116  Identities=22%  Similarity=0.348  Sum_probs=86.3

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCC--CeeecccccC-CCCceeccE-EEEE-cccCcccccEEEEE
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKA--GKRKTRVKKH-TLSPVFDEV-LKFQ-LTLEDLECRTLWLS  196 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~--~~~kT~~~~~-t~nP~wne~-f~f~-v~~~~l~~~~l~i~  196 (419)
                      +.|.|.|++|++|+.     ..+||||+|.+.+.....  .++||+++++ +.||+|||+ |.|. |...++.  .|+|.
T Consensus       650 ~~L~V~Visaq~L~~-----~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela--~Lrf~  722 (816)
T 3qr0_A          650 GTIEIKIISAQFLSD-----KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLA--VVRII  722 (816)
T ss_dssp             EEEEEEEEEEECCCS-----SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGC--EEEEE
T ss_pred             eEEEEEEEEcccCCC-----CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCcc--EEEEE
Confidence            579999999999974     357999999997432211  4679999885 699999998 9998 7766664  89999


Q ss_pred             EEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482        197 VWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       197 v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      |||++    +++||++.++|..+..+   -.+.+|.......    -..+.|.+.+.+.
T Consensus       723 V~D~d----ddfiG~~~ipL~~L~~G---yR~vpL~~~~g~~----~~~atLfv~i~~~  770 (816)
T 3qr0_A          723 VSEEN----GKFIGHRVMPLDGIKPG---YRHVPLRNESNRP----LGLASVFAHIVAK  770 (816)
T ss_dssp             EEETT----SCEEEEEEEESTTCCCE---EEEEEEECTTSCE----EEEEEEEEEEEEE
T ss_pred             EEecC----CCeeeEEEEEHHHcCCc---ceEEEEeCCCCCC----CCceEEEEEEEEE
Confidence            99974    79999999999987543   2356675543321    1226677666654

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.03  E-value=2.9e-09  Score=81.79  Aligned_cols=114  Identities=14%  Similarity=0.188  Sum_probs=81.5

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeec-ccccCCCCceeccEEEEEcccCcccccEEEEEEEe
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKT-RVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWH  199 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT-~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d  199 (419)
                      ..-|+|.+.++.--+.+... ...||||.|.+..... ....+| .+++.|..|+||++|.-.|..    .+.|.|.|++
T Consensus         5 ~~flRi~~~~~~~~~~~~~~-~~lDPy~aV~vdE~~~-~e~g~t~~~K~kT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh   78 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAED-EANQPFCAVKMKEALS-TERGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMR   78 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSS-SSCCCEEEEEEEEEEE-ETTEEEEECCSCCBCCCTTCEEEEECCT----TCEEEEEEEE
T ss_pred             CccEEeeeccccccccCCcc-ccCCceEEEEeeeeEE-cccceeecccCCCCCcCccceEEeeeeC----CEEEEEEEEc
Confidence            34577777665532222221 4589999999852110 012354 777789999999998888766    5599999997


Q ss_pred             cCCCCCCceeEEEEEeCccccc-----CCCCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVF-----DDPSPKCYPLQERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~-----~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      ...    ++++.|.|++.++..     +.....|+.|+|.           |+|++.+.|.
T Consensus        79 ~a~----~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP~-----------Gkl~~~i~~~  124 (126)
T 1yrk_A           79 AAE----EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ-----------AKVLMSVQYF  124 (126)
T ss_dssp             ETT----EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS-----------CEEEEEEEEE
T ss_pred             CCC----CeeeEEEEEHHHHHhhhccCCCceEEEEecccC-----------cEEEEEEEEe
Confidence            653    999999999999863     3344779999885           9999999885

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.98  E-value=4.6e-09  Score=81.77  Aligned_cols=116  Identities=15%  Similarity=0.218  Sum_probs=82.9

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeec-ccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKT-RVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT-~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      .-|+|.+.++.--+.+.......||||.|.+..... ....+| .+++.|..|+||++|.-.|..    .+.|.|.|++.
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~-te~gqtl~~KkkT~~P~Wne~Fd~~V~~----Gr~l~i~Vfh~   84 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVE-SENGQMYIQKKPTMYPPWDSTFDAHINK----GRVMQIIVKGK   84 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEE-ETTEEEEEEEEEEECCCSSSEEEECCCS----SCEEEEEEECS
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeeee-ccCceeecccCCCCCccccceEeeeEEC----CeEEEEEEEcC
Confidence            446666666554333321114689999999853211 012566 666789999999988887755    55999999965


Q ss_pred             CCCCCCceeEEEEEeCccccc-----CCCCCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        201 DMFGRNDFLGEVMMSLENKVF-----DDPSPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~~-----~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      ..    +++..|.|++.++..     +...+.|+.|+|.           |+|++.+.|.-.
T Consensus        85 a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP~-----------Gkl~v~i~~~~e  131 (138)
T 2enj_A           85 NV----DLISETTVELYSLAERCRKNNGKTEIWLELKPQ-----------GRMLMNARYFLE  131 (138)
T ss_dssp             SC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBSS-----------CEEEEEEEECCC
T ss_pred             CC----CeeeEEEEEHHHHHhhhccCCCceEEEEecccC-----------cEEEEEEEEEEe
Confidence            43    899999999999863     3445789999885           999999999643

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.65  E-value=3.5e-07  Score=70.32  Aligned_cols=105  Identities=15%  Similarity=0.194  Sum_probs=73.1

Q ss_pred             cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeec-ccccCCCCCccccEEEEcccCccccccCeEEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKT-GIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWD  350 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T-~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d  350 (419)
                      ...|||.+.++.--+.+... ..||||.|.+-... .....+| .++++|..|+|||.|.-. +..    ...|.|.|++
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~-~~e~g~t~~~K~kT~~P~Wne~Fd~~-V~~----Gr~l~i~Vfh   78 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEAL-STERGKTLVQKKPTMYPEWKSTFDAH-IYE----GRVIQIVLMR   78 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEE-EETTEEEEECCSCCBCCCTTCEEEEE-CCT----TCEEEEEEEE
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeE-EcccceeecccCCCCCcCccceEEee-eeC----CEEEEEEEEc
Confidence            56788888776543323333 78999999874221 1112355 778889999999999875 432    3669999997


Q ss_pred             CCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhC---CCceEEeeeeccCC
Q psy12482        351 HDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMER---PNFWVESCIPLRSS  410 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~---p~~~i~~w~~l~~~  410 (419)
                      ...    ++++.|+|.+.+                       |+.+   .+...+.|..|+|.
T Consensus        79 ~a~----~fvAn~tV~~ed-----------------------L~~~c~~~~g~~e~WvdLeP~  114 (126)
T 1yrk_A           79 AAE----EPVSEVTVGVSV-----------------------LAERCKKNNGKAEFWLDLQPQ  114 (126)
T ss_dssp             ETT----EEEEEEEEEHHH-----------------------HHHHHHTTTTEEEEEEECBSS
T ss_pred             CCC----CeeeEEEEEHHH-----------------------HHhhhccCCCceEEEEecccC
Confidence            444    899999999854                       4433   45678999998885

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.61  E-value=3.6e-07  Score=71.15  Aligned_cols=106  Identities=14%  Similarity=0.203  Sum_probs=74.1

Q ss_pred             CcceEEEEEeccccccccC--CCCCCcEEEEEEeCCCCCcceeec-ccccCCCCCccccEEEEcccCccccccCeEEEEE
Q psy12482        272 AKGSLHVLIKEAKSLCPVK--SNTVDAFCKAYLLPDKGRASKHKT-GIIKRSTSPQWNHTVVYRDVSLEELSERCLELTV  348 (419)
Q Consensus       272 ~~~~l~v~v~~a~~L~~~~--~~~~dpyV~v~~~~~~~~~~~~~T-~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V  348 (419)
                      ....|||.+.++.-.+.+.  ....||||.|.+-... .....+| .++++|..|+|||.|.-. +..    ...|.|.|
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~-~te~gqtl~~KkkT~~P~Wne~Fd~~-V~~----Gr~l~i~V   81 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYV-ESENGQMYIQKKPTMYPPWDSTFDAH-INK----GRVMQIIV   81 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEE-EETTEEEEEEEEEEECCCSSSEEEEC-CCS----SCEEEEEE
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeee-eccCceeecccCCCCCccccceEeee-EEC----CeEEEEEE
Confidence            3578888888776544332  3378999999984221 1123566 777789999999999875 432    36699999


Q ss_pred             EECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhC---CCceEEeeeeccCC
Q psy12482        349 WDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMER---PNFWVESCIPLRSS  410 (419)
Q Consensus       349 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~---p~~~i~~w~~l~~~  410 (419)
                      ++...    +++..|+|.+.+                       |+.+   .+...+.|..|+|.
T Consensus        82 fh~a~----~fVAn~tV~~ed-----------------------L~~~ck~~~g~~e~WvdLeP~  119 (138)
T 2enj_A           82 KGKNV----DLISETTVELYS-----------------------LAERCRKNNGKTEIWLELKPQ  119 (138)
T ss_dssp             ECSSC----SCCEEEEEESHH-----------------------HHHHHHHTTTCEEEEEECBSS
T ss_pred             EcCCC----CeeeEEEEEHHH-----------------------HHhhhccCCCceEEEEecccC
Confidence            96443    899999999954                       3333   34577888888875

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=95.76  E-value=0.18  Score=42.98  Aligned_cols=60  Identities=15%  Similarity=0.226  Sum_probs=47.9

Q ss_pred             CCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC----CCCceeEEEEEeCcc
Q psy12482        159 AGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF----GRNDFLGEVMMSLEN  218 (419)
Q Consensus       159 ~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~----~~~~~iG~~~~~l~~  218 (419)
                      ...++|.+...+.+|.|+|++...++.+.....-|.|++++....    ..+..+|-+.++|-.
T Consensus        76 ~se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           76 ISEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             BSCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             ceeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            456789999999999999999999999998889999999876432    122467888777754

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=95.72  E-value=0.14  Score=43.53  Aligned_cols=61  Identities=20%  Similarity=0.279  Sum_probs=49.2

Q ss_pred             CcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC----CCCceeEEEEEeCCC
Q psy12482        308 RASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL----TSNEFLGGIRLNLGH  369 (419)
Q Consensus       308 ~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~----~~~~~lG~~~i~l~~  369 (419)
                      .....+|.+.+.+.+|.|+|++... +|.+.....-|.|++++...-    .....+|.+-++|-+
T Consensus        75 ~~se~~S~V~YHnk~P~w~EtIKi~-LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           75 AISEYKSVIYYQVKQPRWFETVKVA-IPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             CBSCEECCCCTTCSSCCCCEEEEEE-ECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             CceeEEEEEEEcCCCCCceEeEEEe-eChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            3456889999999999999999996 999988888899999985432    123579999999843

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=95.66  E-value=0.084  Score=55.78  Aligned_cols=96  Identities=17%  Similarity=0.131  Sum_probs=69.9

Q ss_pred             cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCe-eecccccCCCCceeccEEEEEcccCcc-cccEEEEEE
Q psy12482        120 KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGK-RKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLSV  197 (419)
Q Consensus       120 ~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~-~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~v  197 (419)
                      -...++|+|..|.++.... . ...+-||.+.+..+++.... .+|..+ ...+|.|||...|++...++ ..+.|.|+|
T Consensus       353 ~~~~f~v~i~~~~~~n~~~-~-~~~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~~~Wne~l~f~i~i~dLPr~arL~~tl  429 (1091)
T 3hhm_A          353 INSALRIKILCATYVNVNI-R-DIDKIYVRTGIYHGGEPLCDNVNTQRV-PCSNPRWNEWLNYDIYIPDLPRAARLCLSI  429 (1091)
T ss_dssp             CCSEEEEEEEEESCCCCCC-S-SCCCCCEEEEEESSSCSSCCEECCCCC-CTTSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred             CCCCEEEEEEEecCCCCCc-c-ccceEEEEEEEEECCEEccCceecccc-CCCCCCCCeeEEecCccccCChhcEEEEEE
Confidence            4678999999999886443 2 35688999999877766533 344433 45688899999999887776 467999999


Q ss_pred             EecCCC----CCCceeEEEEEeCcc
Q psy12482        198 WHSDMF----GRNDFLGEVMMSLEN  218 (419)
Q Consensus       198 ~d~~~~----~~~~~iG~~~~~l~~  218 (419)
                      |+....    .....||.+.++|-+
T Consensus       430 ~~~~~~~~~~~~~~~lg~~n~~lfd  454 (1091)
T 3hhm_A          430 CSVKGRKGAKEEHCPLAWGNINLFD  454 (1091)
T ss_dssp             CCCCCCC-------CCEEEEEESBC
T ss_pred             EEecCccCcccccceeEEeeeeeEc
Confidence            987542    134589999998866

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=95.29  E-value=0.066  Score=56.55  Aligned_cols=96  Identities=15%  Similarity=0.146  Sum_probs=68.0

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcc-eeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRAS-KHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWD  350 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~-~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d  350 (419)
                      ...++|+|..|.++........+.||++.+..++...- ..+|..+. ..+|.|||.+.|+ +...++. ...|.|+||+
T Consensus       354 ~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~-i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYD-IYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEE-EEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEec-CccccCChhcEEEEEEEE
Confidence            56899999999988643322578899999987755432 34444343 4678899999996 7777764 5669999998


Q ss_pred             CCCC----CCCceeEEEEEeCCCC
Q psy12482        351 HDRL----TSNEFLGGIRLNLGHG  370 (419)
Q Consensus       351 ~~~~----~~~~~lG~~~i~l~~~  370 (419)
                      ....    .....||.+.+.|-+.
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCT
T ss_pred             ecCccCcccccceeEEeeeeeEcc
Confidence            5432    1245799999999774

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=95.25  E-value=0.083  Score=55.36  Aligned_cols=96  Identities=13%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             ccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeecccccCCCCceeccEEEEEcccCcc-cccEEEEE
Q psy12482        119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLS  196 (419)
Q Consensus       119 ~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~  196 (419)
                      .-...+.|+|..+.++...    ...+-||.+.+..+++... ...|..+.-..+|.|||.+.|++...++ .++.|.|+
T Consensus       214 ~~~~~f~i~i~~~~~~~~~----~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~t  289 (940)
T 2wxf_A          214 SLEQPFSIELIEGRKVNAD----ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFA  289 (940)
T ss_dssp             TCCSEEEEEEEEEECCCC-------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEE
T ss_pred             hcCCceEEEEEEecccCCC----CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEE
Confidence            4467899999999998754    3457899999886665442 3455555557789999999999887776 46789999


Q ss_pred             EEecCCC--C----------CCceeEEEEEeCcc
Q psy12482        197 VWHSDMF--G----------RNDFLGEVMMSLEN  218 (419)
Q Consensus       197 v~d~~~~--~----------~~~~iG~~~~~l~~  218 (419)
                      ||+....  +          ....||.+.++|-+
T Consensus       290 i~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  323 (940)
T 2wxf_A          290 LYAVVEKAKKARSTKKKSKKADCPIAWANLMLFD  323 (940)
T ss_dssp             EEEEC----------------CEEEEEEEEESBC
T ss_pred             EEEecCCccCccccccccccccceEEEEeeeEEC
Confidence            9996431  1          24588999888865

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=94.13  E-value=0.13  Score=53.81  Aligned_cols=95  Identities=11%  Similarity=0.146  Sum_probs=67.6

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCc-ceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRA-SKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWD  350 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~-~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d  350 (419)
                      ...++|.|..+.++...+  .++-||.+.+..++... ....|..+.-..+|.|||.+.|+ +...++. +..|.|+||+
T Consensus       216 ~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~-i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNADE--RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFD-ISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEE-EEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCCC--CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcc-cccccCCcccEEEEEEEE
Confidence            578999999999986532  46789999987665332 23445555556789999999996 7777764 5779999999


Q ss_pred             CCCC--C----------CCceeEEEEEeCCCC
Q psy12482        351 HDRL--T----------SNEFLGGIRLNLGHG  370 (419)
Q Consensus       351 ~~~~--~----------~~~~lG~~~i~l~~~  370 (419)
                      ...-  +          ....||.+.++|-+.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECC
Confidence            5321  1          245899999998763

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=93.05  E-value=0.31  Score=39.12  Aligned_cols=127  Identities=13%  Similarity=0.106  Sum_probs=78.7

Q ss_pred             CCEEEEEEEeecCCCCCC-CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcc-----cccEEE
Q psy12482        121 QGALEIHVKQCKDLAPVD-TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDL-----ECRTLW  194 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l-----~~~~l~  194 (419)
                      .+.+.|+|.+|.=-+..- .. +..+|..-+...--.  -..+.|.+++ +.+|.||-+-.|.|..+++     +...+.
T Consensus        17 EnlfEihi~~~~~~~~~l~~~-~d~~p~tF~t~dF~d--fEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~   92 (156)
T 2yrb_A           17 ENLFEIHINKVTFSSEVLQAS-GDKEPVTFCTYAFYD--FELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   92 (156)
T ss_dssp             CEEEEEEEEEECCCHHHHHHH-CSSCCEEEEEECSTT--CCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             CcEEEEEEeEEEEcHHHHhhc-cccCCcEEEEEEEec--eEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence            456778888776211110 01 234676655554322  2246677765 7899999999999876654     456899


Q ss_pred             EEEEecCCCCCCceeEEEEEeCcccccCCCC-CceecCccccchhhhhhccccceEEEEEEeC
Q psy12482        195 LSVWHSDMFGRNDFLGEVMMSLENKVFDDPS-PKCYPLQERSEILDELICSKGELIIGLKFVP  256 (419)
Q Consensus       195 i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~-~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~  256 (419)
                      ++++.... +..+.||.+.|+|.++...++. ..-.+|......    ....|.|.+.+++..
T Consensus        93 lELhqa~g-~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~----~~~~G~LeywiRL~~  150 (156)
T 2yrb_A           93 LEVHQAYS-TEYETIAACQLKFHEILEKSGRIFCTASLIGTKGD----IPNFGTVEYWFRLRV  150 (156)
T ss_dssp             EEEEEECS-SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSC----CTTSEEEEEEEEEEE
T ss_pred             EEEEEeeC-CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCC----cceEEEEEEEEEEec
Confidence            99988753 3567999999999997655432 223344433221    123477777777653

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=92.39  E-value=0.14  Score=54.44  Aligned_cols=79  Identities=14%  Similarity=0.171  Sum_probs=59.4

Q ss_pred             ccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCC-eeecccccCCCCceeccEEEEEcccCcc-cccEEEEE
Q psy12482        119 YKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG-KRKTRVKKHTLSPVFDEVLKFQLTLEDL-ECRTLWLS  196 (419)
Q Consensus       119 ~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~-~~kT~~~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~  196 (419)
                      .-...+.|+|..+.++...    ...+-||.+.+..+++... ...|..+.-..+|.|||.+.|++...++ .++.|.|+
T Consensus       350 ~~~~~f~i~i~~~~~~~~~----~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~t  425 (1092)
T 2y3a_A          350 DNNNPFQITLVKGNKLNTE----ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFA  425 (1092)
T ss_dssp             CCCSEEEEEECCCCCCCCC----SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEE
T ss_pred             hcCCCEEEEEEEeccCCCC----CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEE
Confidence            4467999999999998754    3457899988876655432 3445555557789999999999888777 46789999


Q ss_pred             EEecC
Q psy12482        197 VWHSD  201 (419)
Q Consensus       197 v~d~~  201 (419)
                      ||+..
T Consensus       426 i~~~~  430 (1092)
T 2y3a_A          426 VYAVL  430 (1092)
T ss_dssp             CCCC-
T ss_pred             EEEec
Confidence            99863

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=90.84  E-value=0.19  Score=53.41  Aligned_cols=95  Identities=12%  Similarity=0.117  Sum_probs=65.2

Q ss_pred             cceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCc-ceeecccccCCCCCccccEEEEcccCccccc-cCeEEEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRA-SKHKTGIIKRSTSPQWNHTVVYRDVSLEELS-ERCLELTVWD  350 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~-~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~-~~~l~i~V~d  350 (419)
                      ...++|+|..+.++...+  .++-||.+.+..++... ....|..+.-..+|.|||.+.|+ +...++. +..|.|+||+
T Consensus       352 ~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~-i~~~dLPr~a~L~~ti~~  428 (1092)
T 2y3a_A          352 NNPFQITLVKGNKLNTEE--TVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFD-INICDLPRMARLCFAVYA  428 (1092)
T ss_dssp             CSEEEEEECCCCCCCCCS--SCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEE-EESSSCCTTCEEEEECCC
T ss_pred             CCCEEEEEEEeccCCCCC--CceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeC-CccccCChhcEEEEEEEE
Confidence            578999999999996542  46789998887654332 23445555556789999999996 7666664 5779999998


Q ss_pred             CC----CC------------------CCCceeEEEEEeCCCC
Q psy12482        351 HD----RL------------------TSNEFLGGIRLNLGHG  370 (419)
Q Consensus       351 ~~----~~------------------~~~~~lG~~~i~l~~~  370 (419)
                      ..    ..                  +....||.+.++|-+.
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  470 (1092)
T 2y3a_A          429 VLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDF  470 (1092)
T ss_dssp             C------------------------------CCEEEEESBCT
T ss_pred             ecCccccccccccccccccccccccccccceeEEEeeeeECC
Confidence            52    10                  1134899999988663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	419
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-30
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	8e-23
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	7e-29
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-19
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-28
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-14
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	6e-27
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-19
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-26
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	9e-20
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-25
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	5e-13
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-24
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-17
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	1e-23
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	6e-15
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-23
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	5e-17
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	1e-20
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	1e-09
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-20
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-11
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	5e-18
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	1e-07
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	7e-16
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-12
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-14
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	4e-06
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	2e-13
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	1e-05
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	5e-12
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-06
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-11
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	6e-07
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-10
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	7e-07
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	3e-10
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	4e-07
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	8e-09

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (281), Expect = 1e-30
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
           +GE+   L Y      L + V + + L   D      DPYVKV L   K +  K+KT VK
Sbjct: 1   RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLS-DPYVKVNLYHAKKRISKKKTHVK 59

Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLE 217
           K T + VF+E+  F +  E LE  ++   V  S+   RN+ +G +++   
Sbjct: 60  KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 109

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.3 bits (226), Expect = 8e-23
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 18/153 (11%)

Query: 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLL 303
           +GEL++ L +                    +L V++ +A+ L     S   D + K  L 
Sbjct: 1   RGELLVSLCYQS---------------TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLY 45

Query: 304 PDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGI 363
             K R SK KT + K + +  +N   V+ D+  E L E  +E  V D +R + NE +G +
Sbjct: 46  HAKKRISKKKTHVKKCTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRL 104

Query: 364 RLNLGH-GKHYSKLVDWMDSSGKEILLWQQMME 395
            L     G       +  D   ++I  W  + +
Sbjct: 105 VLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 137

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 7e-29
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G++   L ++     L + +   KDL   +   +  +PYVK+Y LPD+S   KR+T+  K
Sbjct: 1   GQLSIKLWFDKVGHQLIVTILGAKDLPSRE-DGRPRNPYVKIYFLPDRSDKNKRRTKTVK 59

Query: 169 HTLSPVFDEVLKFQ-LTLEDLECRTLWLSVWHSDMFG--RNDFLGEVMMSLENKVFDDPS 225
            TL P +++   +  +   +   R L +++W         ++FLGE+++ L      D  
Sbjct: 60  KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIEL-ETALLDDE 118

Query: 226 PKCYPLQ 232
           P  Y LQ
Sbjct: 119 PHWYKLQ 125

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 1e-19
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 270 SAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
                 L V I  AK L   +     + + K Y LPD+   +K +T  +K++  P+WN T
Sbjct: 10  DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 69

Query: 329 VVYRDVSLEELSERCLELTVWDHDRL--TSNEFLGGIRLNLG 368
            +Y  V   E  ER LE+T+WD  R+    +EFLG I + L 
Sbjct: 70  FIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 111

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  106 bits (265), Expect = 3e-28
 Identities = 42/124 (33%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G++++ L Y+++   L + + Q  +L  +D     SDPYVKV+LLPDK K  K +T+V +
Sbjct: 21  GKLQYSLDYDFQNNQLLVGIIQAAELPALD-MGGTSDPYVKVFLLPDKKK--KFETKVHR 77

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC 228
            TL+PVF+E   F++   +L  +TL ++V+  D F ++D +GE  + +    F   + + 
Sbjct: 78  KTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEW 137

Query: 229 YPLQ 232
             LQ
Sbjct: 138 RDLQ 141

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.2 bits (166), Expect = 2e-14
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 4/113 (3%)

Query: 270 SAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHT 328
                 L V I +A  L  +    T D + K +LLPDK +  K +T + +++ +P +N  
Sbjct: 30  DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQ 87

Query: 329 VVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
             +  V   EL  + L + V+D DR + ++ +G  ++ +          +W D
Sbjct: 88  FTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  103 bits (257), Expect = 6e-27
 Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 13/150 (8%)

Query: 100 GRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKA 159
           G  G +   G++ F L+Y    G L + + + K+L  +D     SDPYVK++L+ +  + 
Sbjct: 3   GGGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGG-LSDPYVKIHLMQNGKRL 61

Query: 160 GKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN- 218
            K+KT +KK+TL+P ++E   F++  E ++   + ++V   D  G+ND +G+V +   + 
Sbjct: 62  KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121

Query: 219 -----------KVFDDPSPKCYPLQERSEI 237
                           P  + + LQ   E+
Sbjct: 122 GAELRHWSDMLANPRRPIAQWHTLQVEEEV 151

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.8 bits (201), Expect = 4e-19
 Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 30/173 (17%)

Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLP 304
           G++   L++VP                 G L V+I EAK+L  +      D + K +L+ 
Sbjct: 12  GDICFSLRYVPT---------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ 56

Query: 305 DKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIR 364
           +  R  K KT I K + +P +N +  +  V  E++ +  + +TV D+D++  N+ +G + 
Sbjct: 57  NGKRLKKKKTTIKKNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVF 115

Query: 365 LNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSSLEFSSPI 417
           +               +S+G E+  W  M+  P   +     L+   E  + +
Sbjct: 116 VGY-------------NSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAML 155

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 39/108 (36%), Positives = 64/108 (59%), Gaps = 1/108 (0%)

Query: 108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVK 167
           +G++   L Y+ +QG L + + +C  LA +D     SDP+VK++L PD  K  K KT++K
Sbjct: 1   RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDAN-GYSDPFVKLWLKPDMGKKAKHKTQIK 59

Query: 168 KHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMS 215
           K TL+P F+E   + +   DL  ++L +SVW  D+   ND++G   + 
Sbjct: 60  KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG 107

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.0 bits (204), Expect = 9e-20
 Identities = 41/151 (27%), Positives = 78/151 (51%), Gaps = 18/151 (11%)

Query: 245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTV-DAFCKAYLL 303
           +G++++ L +                  +G L V I     L  + +N   D F K +L 
Sbjct: 1   RGKILVSLMYSTQ---------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLK 45

Query: 304 PDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGI 363
           PD G+ +KHKT I K++ +P++N    Y D+   +L+++ L+++VWD+D   SN+++GG 
Sbjct: 46  PDMGKKAKHKTQIKKKTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGC 104

Query: 364 RLNLGH-GKHYSKLVDWMDSSGKEILLWQQM 393
           +L +   G+      + + +  K+I  W Q+
Sbjct: 105 QLGISAKGERLKHWYECLKNKDKKIERWHQL 135

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.0 bits (243), Expect = 3e-25
 Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 13/140 (9%)

Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAG------ 160
           + GE++  + Y+   G L IH+ Q ++L P D     SDP+VKVYLLP + +        
Sbjct: 5   ITGEIQLQINYD--LGNLIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRGQVMVVQNAS 61

Query: 161 ---KRKTRVKKHTLSPVFDEVLKFQLTLE-DLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
              KR+T+  + +L+P +++ + ++      L  +TL ++VW  D F  NDFLGEV++ L
Sbjct: 62  AEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121

Query: 217 ENKVFDDPSPKCYPLQERSE 236
            +    D +P+ YPL+E++E
Sbjct: 122 SSTSHLDNTPRWYPLKEQTE 141

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.8 bits (154), Expect = 5e-13
 Identities = 42/117 (35%), Positives = 70/117 (59%), Gaps = 10/117 (8%)

Query: 273 KGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRA---------SKHKTGIIKRSTS 322
            G+L + I +A++L P   +   D F K YLLP +G+           K +T  +++S +
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76

Query: 323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDW 379
           P+WN TV+Y+ +S+E+L ++ LE+TVWD+DR +SN+FLG + ++L    H      W
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRW 133

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.6 bits (237), Expect = 3e-24
 Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 4/128 (3%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G + F L+YN+++ A  +++K+ + L  +D +   SDPY+K+ +LP+K    K KTRV +
Sbjct: 9   GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKTRVLR 66

Query: 169 HTLSPVFDEVLK-FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPK 227
            TL P FDE    + +    ++   L  ++   D F R+D +GEV++ L + +       
Sbjct: 67  KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL-SGIELSEGKM 125

Query: 228 CYPLQERS 235
               +  S
Sbjct: 126 LMNREIIS 133

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 2e-17
 Identities = 28/130 (21%), Positives = 64/130 (49%), Gaps = 14/130 (10%)

Query: 270 SAAKGSLHVLIKEAKSLCPV--KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNH 327
           +  + +  V IKEA+ L  +  +S T D + K  +LP+K    K KT +++++  P ++ 
Sbjct: 18  NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKTRVLRKTLDPAFDE 75

Query: 328 TVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEI 387
           T  +  +   ++ E  L  T+   DR + ++ +G + + L            ++ S  ++
Sbjct: 76  TFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG----------IELSEGKM 125

Query: 388 LLWQQMMERP 397
           L+ ++++  P
Sbjct: 126 LMNREIISGP 135

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.6 bits (232), Expect = 1e-23
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)

Query: 107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRV 166
            +G +   +Q +  +  L + V+  K+L P+D     SDPYVK+ L+PD     K+KT+ 
Sbjct: 2   RRGRIY--IQAHIDREVLIVVVRDAKNLVPMDPN-GLSDPYVKLKLIPDPKSESKQKTKT 58

Query: 167 KKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSP 226
            K +L+P ++E  +FQL  E  + R L + +W  D+  RNDF+G +   + +++      
Sbjct: 59  IKCSLNPEWNETFRFQLK-ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVD 116

Query: 227 KCYPLQERSE 236
             + L  + E
Sbjct: 117 GWFKLLSQEE 126

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.0 bits (168), Expect = 6e-15
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 268 SSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWN 326
            +   +  L V++++AK+L P+  N   D + K  L+PD    SK KT  IK S +P+WN
Sbjct: 9   QAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWN 68

Query: 327 HTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
            T  ++    E   +R L + +WD D  + N+F+G +   +
Sbjct: 69  ETFRFQLK--ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGI 107

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.3 bits (231), Expect = 2e-23
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 1/110 (0%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           GE+ F L Y    G L + + +  +L  +D     SDPYVK  L+ +  +  KRKT +KK
Sbjct: 7   GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTG-FSDPYVKASLISEGRRLKKRKTSIKK 65

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
           +TL+P ++E L F +  E +E   L ++V   D  G N+ +G   +  E 
Sbjct: 66  NTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEA 115

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.6 bits (185), Expect = 5e-17
 Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 29/163 (17%)

Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLP 304
           GEL   L ++P                 G L V I +A +L  +  +   D + KA L+ 
Sbjct: 7   GELNFSLCYLPT---------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLIS 51

Query: 305 DKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIR 364
           +  R  K KT I K + +P +N  +V+ DV+ E +    L + V D+D +  NE +G  R
Sbjct: 52  EGRRLKKRKTSIKKNTLNPTYNEALVF-DVAPESVENVGLSIAVVDYDCIGHNEVIGVCR 110

Query: 365 LNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPL 407
           +                +       W +M+  P   VE    L
Sbjct: 111 VGPE------------AADPHGREHWAEMLANPRKPVEHWHQL 141

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (211), Expect = 1e-20
 Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 5/138 (3%)

Query: 97  AGEGRYGSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDK 156
              G  GS     ++ + L Y+ ++  L +   +              D YV+  +    
Sbjct: 1   GSSGSSGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTSNH----DGGCDCYVQGSVANRT 56

Query: 157 SKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSL 216
               + +T +KK  L   ++E L   L  E+L   TL L++   D F R+   GE+ + L
Sbjct: 57  GS-VEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGL 115

Query: 217 ENKVFDDPSPKCYPLQER 234
           +       + +   L+  
Sbjct: 116 DGTSVPLGAAQWGELKTS 133

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 4/112 (3%)

Query: 270 SAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTV 329
              K  L V   EA +         D + +  +    G   + +T + KR     W   +
Sbjct: 22  DCQKAELFVTRLEAVTSNH--DGGCDCYVQGSVANRTGS-VEAQTALKKRQLHTTWEEGL 78

Query: 330 VYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD 381
           V   ++ EEL    L LT+   DR + +   G +RL L           W +
Sbjct: 79  VLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.6 bits (208), Expect = 2e-20
 Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 5/127 (3%)

Query: 109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK 168
           G + F L+Y Y    L + + Q  DL P       SDPYVK+YLLPD+ K  K +T+V +
Sbjct: 5   GRISFALRYLYGSDQLVVRILQALDL-PAKDSNGFSDPYVKIYLLPDRKK--KFQTKVHR 61

Query: 169 HTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDP--SP 226
            TL+P+F+E  +F + L +L  R L  SV+  D F R+D +G+V++    ++ + P   P
Sbjct: 62  KTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRP 121

Query: 227 KCYPLQE 233
               + E
Sbjct: 122 LWRDILE 128

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.2 bits (142), Expect = 2e-11
 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 28/151 (18%)

Query: 246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSL-CPVKSNTVDAFCKAYLLP 304
           G +   L+++                    L V I +A  L     +   D + K YLLP
Sbjct: 5   GRISFALRYLYG---------------SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLP 49

Query: 305 DKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIR 364
           D+ +  K +T + +++ +P +N T  +  V L EL++R L  +V+D DR + ++ +G + 
Sbjct: 50  DRKK--KFQTKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVV 106

Query: 365 LNLGHGKHYSKLVDWMDSSGKEILLWQQMME 395
           L+          +  +     +  LW+ ++E
Sbjct: 107 LD---------NLLELAEQPPDRPLWRDILE 128

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 77.9 bits (191), Expect = 5e-18
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 16/142 (11%)

Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
            G LE+ +   K L   D      DPYV++          ++    +    +P ++E   
Sbjct: 9   HGTLEVVLVSAKGLEDAD-FLNNMDPYVQLTCRTQD----QKSNVAEGMGTTPEWNETFI 63

Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDP-SPKCYPLQERSEILD 239
           F ++    E       ++  D+   +D +GE  + LE    +    P  Y + +  E   
Sbjct: 64  FTVSEGTTEL---KAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEE--- 117

Query: 240 ELICSKGELIIGLKFVPPEDSS 261
                KGE+ + L F P   SS
Sbjct: 118 ----YKGEIWVALSFKPSGPSS 135

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 9/102 (8%)

Query: 267 KSSSAAKGSLHVLIKEAKSLCPV-KSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQW 325
             SS   G+L V++  AK L      N +D + +           +         T+P+W
Sbjct: 3   SGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQD----QKSNVAEGMGTTPEW 58

Query: 326 NHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
           N T ++            L+  ++D D  T ++ +G   + L
Sbjct: 59  NETFIFTVSE----GTTELKAKIFDKDVGTEDDAVGEATIPL 96

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.7 bits (175), Expect = 7e-16
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 119 YKQGALEIHVKQCKDLAPVD-TKRQRSDPYVKVYLLPDKSKAGKRKTR-VKKHTLSPVFD 176
           ++   L + +   + L  V+  K    DP V V +       G R+T  +  +  +P +D
Sbjct: 1   WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 60

Query: 177 EVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS 235
              +F++T+ DL        V   D   +NDF+G+  +   +        +   L  ++
Sbjct: 61  MEFEFEVTVPDLALV--RFMVEDYDSSSKNDFIGQSTIPWNS---LKQGYRHVHLLSKN 114

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 3e-12
 Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 276 LHVLIKEAKSLCPV---KSNTVDAFCKAYLLPDKGRASKHKTGIIKRST-SPQWNHTVVY 331
           L V I   + L  V   K++ VD      +          +T +I  +  +P+W+    +
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 332 RDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILL 389
               +       +   V D+D  + N+F+G   +     K   + V  +  +G +   
Sbjct: 66  E---VTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSKNGDQHPS 120

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 2e-14
 Identities = 17/120 (14%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 124 LEIHVKQCKDLAPVDTK--RQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
             + V +   +            DPYV++++        +++TR   + ++PV++E   F
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDS--RKRTRHFNNDINPVWNE--TF 60

Query: 182 QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDEL 241
           +  L+  +   L +++  ++    ++ LG    ++ +    +     +   + +E++ E+
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEM 119

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 4e-06
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 272 AKGSLHVLIKEAKSLCPVKS----NTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNH 327
           +     V++  A  +         +T D + + ++        + +T       +P WN 
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDS--RKRTRHFNNDINPVWNE 58

Query: 328 TVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
           T  +     +E     LE+T+ D + +  +E LG     +
Sbjct: 59  TFEFILDPNQE---NVLEITLMDANYV-MDETLGTATFTV 94

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.8 bits (157), Expect = 2e-13
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L I      +L  +  +   S P+  V +    +    +    KK T+ P +       +
Sbjct: 5   LRISFNSY-ELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63

Query: 184 TLEDLECRTLWLSVWH-SDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEIL 238
                E R + + +   ++       +G  +++   K  +  +     LQ ++++L
Sbjct: 64  Y----EGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQAKVL 115

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 14/107 (13%), Positives = 30/107 (28%), Gaps = 7/107 (6%)

Query: 276 LHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVS 335
           +     E  SL   + +    FC   +               K +  P+W  T       
Sbjct: 7   ISFNSYELGSL-QAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE 65

Query: 336 LEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVD-WMD 381
                   +++ +        +E   G+ +     K  +   + W+D
Sbjct: 66  GRV-----IQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLD 107

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 5e-12
 Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 15/134 (11%)

Query: 122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKF 181
           G L++ V +  DL   D    +SDP+  + L  D+      +T      L+P +++V  F
Sbjct: 6   GILQVKVLKAADLLAADFS-GKSDPFCLLELGNDR-----LQTHTVYKNLNPEWNKVFTF 59

Query: 182 QLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDEL 241
            +         L ++V+  D     DFLG+V + L +    D  P CY L+ +    D  
Sbjct: 60  PI---KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLS--IRDGQPNCYVLKNK----DLE 110

Query: 242 ICSKGELIIGLKFV 255
              KG + + +  +
Sbjct: 111 QAFKGVIYLEMDLI 124

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 16/123 (13%)

Query: 274 GSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYR 332
           G L V + +A  L     +   D FC   L  D+ +          ++ +P+WN    + 
Sbjct: 6   GILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-----KNLNPEWNKVFTFP 60

Query: 333 DVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH---GKHYSKLVDWMDSSGK---E 386
                      LE+TV+D D     +FLG + + L     G+    ++   D        
Sbjct: 61  IKD----IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGV 116

Query: 387 ILL 389
           I L
Sbjct: 117 IYL 119

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 22/128 (17%), Positives = 46/128 (35%), Gaps = 20/128 (15%)

Query: 122 GALEIHVKQCKDLAPVDT----------KRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTL 171
           G L+I + +   L P             +    DPY+ + +   +      +T  K+ T 
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG----QTATKQKTN 61

Query: 172 SPVFDEVLKFQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC--Y 229
           SP + +     +       R + L+V+H    G +DF+    +  E  + +         
Sbjct: 62  SPAWHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWI 117

Query: 230 PLQERSEI 237
            L+   ++
Sbjct: 118 DLEPEGKV 125

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 13/102 (12%)

Query: 274 GSLHVLIKEAKSLCPVKSNTVDAFCK--------AYLLPDKGRASKHKTGIIKRSTSPQW 325
           G L + I EA SL P   +  DA            Y+  +   +   +T   +++ SP W
Sbjct: 6   GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65

Query: 326 NHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
           +   V         + R +EL V+    +  ++F+    +  
Sbjct: 66  HDEFVTDVC-----NGRKIELAVFHDAPIGYDDFVANCTIQF 102

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 13/140 (9%)

Query: 121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLK 180
           +  L+I V   K             PYV+V +         +KT    +T SP + + L 
Sbjct: 5   KSQLQITVISAKLKENKKNWFG-PSPYVEVTVDGQS-----KKTEKCNNTNSPKWKQPLT 58

Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDE 240
             +T        L   VW       +  LG   + +        + K   +    ++  +
Sbjct: 59  VIVT----PVSKLHFRVWSHQTLKSDVLLGTAALDIYE-TLKSNNMKLEEVVVTLQLGGD 113

Query: 241 L--ICSKGELIIGLKFVPPE 258
                + G+L I L  +  E
Sbjct: 114 KEPTETIGDLSICLDGLQLE 133

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 7e-07
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 11/100 (11%)

Query: 269 SSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNH 327
           S   K  L + +  AK     K+      + +  +          KT     + SP+W  
Sbjct: 1   SLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTV-----DGQSKKTEKCNNTNSPKWKQ 55

Query: 328 TVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNL 367
            +              L   VW H  L S+  LG   L++
Sbjct: 56  PLTVIVTP-----VSKLHFRVWSHQTLKSDVLLGTAALDI 90

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP---DKSKAGKRKTRVKKHTLSPVFDEVLK 180
           L I V   + L+           YV+V L     D  +  + K     ++++PV+ E   
Sbjct: 3   LSITVISGQFLSERS-----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 57

Query: 181 FQLTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLEN 218
               +   E  +L ++V        N FLG  ++ +  
Sbjct: 58  VFEKILMPELASLRVAVMEEG----NKFLGHRIIPINA 91

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 11/118 (9%)

Query: 275 SLHVLIKEAKSLCPVKSNTVDAFCKAYLLP---DKGRASKHKTGIIKRSTSPQWNHTVVY 331
           +L + +   + L       V  + +  L     D  R  + K      S +P W      
Sbjct: 2   TLSITVISGQFLSERS---VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58

Query: 332 RDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILL 389
               +       L + V +      N+FLG   + +         +     S   + +
Sbjct: 59  -FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLCLHSESNMPLTM 111

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.3 bits (122), Expect = 8e-09
 Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 16/122 (13%)

Query: 124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQL 183
           L + VK+ K     +      + YV +     K +  K  T   +    P +++   F++
Sbjct: 4   LCVGVKKAKFDGAQEK----FNTYVTL-----KVQNVKSTTIAVR-GSQPSWEQDFMFEI 53

Query: 184 TLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKC--YPLQERSEILDEL 241
              +     L + VW+  +   +  +G V + L      +         L  ++ + D  
Sbjct: 54  ---NRLDLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSE 109

Query: 242 IC 243
           IC
Sbjct: 110 IC 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	419
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.97
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.97
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.96
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.96
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.92
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.92
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.92
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.92
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.92
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.91
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.91
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.9
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.9
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.9
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.9
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.89
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.89
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.88
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.88
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.87
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.87
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.86
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.84
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.84
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.83
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.8
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.78
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.78
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.77
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.75
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.74
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.73
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.72
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.7
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.69
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.69
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.64
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.54
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.52
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.49
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	97.07
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.96

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1e-29  Score=206.58  Aligned_cols=136  Identities=29%  Similarity=0.594  Sum_probs=123.8

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|.++++|.|.               .++|.|.|++|+||+..+.. .+||||+|++.+++....+++|++++++.||
T Consensus         1 rG~l~l~l~Y~~~---------------~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P   65 (137)
T d2cm5a1           1 RGKILVSLMYSTQ---------------QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNP   65 (137)
T ss_dssp             CCEEEEEEEEETT---------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSC
T ss_pred             CcEEEEEEEEECC---------------CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCC
Confidence            5999999999998               79999999999999998877 8999999999887667788999999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES  403 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~  403 (419)
                      +|||.|.|. ++..++....|.|.|||++.++++++||++.|+++.             .+.+.+||++|+.+|++++++
T Consensus        66 ~wne~f~f~-v~~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~-------------~~~~~~~W~~l~~~~~~~v~~  131 (137)
T d2cm5a1          66 EFNEEFFYD-IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISA-------------KGERLKHWYECLKNKDKKIER  131 (137)
T ss_dssp             EEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTC-------------CHHHHHHHHHHHHCTTCCEEE
T ss_pred             ccceEEEEE-eEHHHccccEEEEEeeeCCCCCCCCEEEEEEeCccc-------------cCcchhhhhhHhhCCCCeeeE
Confidence            999999997 888888889999999999999999999999999954             467789999999999999999


Q ss_pred             eeeccC
Q psy12482        404 CIPLRS  409 (419)
Q Consensus       404 w~~l~~  409 (419)
                      ||+|++
T Consensus       132 Wh~L~~  137 (137)
T d2cm5a1         132 WHQLQN  137 (137)
T ss_dssp             EEECBC
T ss_pred             ceeccC
Confidence            999985

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=4.2e-30  Score=208.79  Aligned_cols=135  Identities=26%  Similarity=0.389  Sum_probs=119.9

Q ss_pred             ccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        245 KGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       245 ~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      +|+|.++++|.|.               .++|.|+|++|+||+.++.+ .+||||+|.+.++.....+++|++++++.||
T Consensus         1 rG~l~~sl~Y~~~---------------~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P   65 (138)
T d1w15a_           1 RGELLVSLCYQST---------------TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNA   65 (138)
T ss_dssp             CCEEEEEEEEETT---------------TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSE
T ss_pred             CcEEEEEEEEcCC---------------CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCC
Confidence            5999999999998               79999999999999999887 8999999999877656667899999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEe
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVES  403 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~  403 (419)
                      .|||.|.|. ++..++....|.|+|||++.++++++||+|.|++.             ..+.+.+||++|+.+|+++|++
T Consensus        66 ~wne~f~F~-v~~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~-------------~~~~~~~hW~~ll~~~~k~i~~  131 (138)
T d1w15a_          66 VFNELFVFD-IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT-------------AEGSGGGHWKEICDFPRRQIAK  131 (138)
T ss_dssp             EEEEEEEEE-CCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTT-------------CCSHHHHHHHHHHHSTTCCEEE
T ss_pred             eECcEEEEE-ecHHHhCccEEEEEEEeCCCCCCCCEEEEEEEcch-------------hCCchHHHHHHHHhCCCCeeeE
Confidence            999999996 88888888889999999999999999999999984             3677889999999999999999


Q ss_pred             eeecc
Q psy12482        404 CIPLR  408 (419)
Q Consensus       404 w~~l~  408 (419)
                      ||+|.
T Consensus       132 Wh~L~  136 (138)
T d1w15a_         132 WHMLC  136 (138)
T ss_dssp             EEECB
T ss_pred             CeEcc
Confidence            99995

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=4.2e-29  Score=207.33  Aligned_cols=141  Identities=27%  Similarity=0.463  Sum_probs=128.9

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST  321 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~  321 (419)
                      ...|+|.++++|.|.               .++|.|.|++|+||+..+.+ .+||||+|.+.+.+....+++|++++++.
T Consensus         9 ~~~G~l~~sl~Y~~~---------------~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~   73 (157)
T d1uowa_           9 EKLGDICFSLRYVPT---------------AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTL   73 (157)
T ss_dssp             GCCCEEEEEEEEETT---------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCS
T ss_pred             eeeeEEEEEEEEcCC---------------CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCC
Confidence            457999999999998               79999999999999998887 99999999998776666778999999999


Q ss_pred             CCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceE
Q psy12482        322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWV  401 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i  401 (419)
                      ||+|||.|.|+ ++..++....|.|+|||++.++++++||++.|++..             .+.+..||.+|+.+|++++
T Consensus        74 nP~wne~f~F~-v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~-------------~~~~~~hW~~~~~~~~~~v  139 (157)
T d1uowa_          74 NPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS-------------TGAELRHWSDMLANPRRPI  139 (157)
T ss_dssp             SCEEEEEEEEE-CCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTC-------------CHHHHHHHHHHHHSTTCCE
T ss_pred             CcccCCeEEEE-ecHHHcCccEEEEEEcccCCCCCCceeEEEEEeccc-------------CChhHHHHHHHHhCCCCce
Confidence            99999999996 988888888999999999999999999999999854             5788999999999999999


Q ss_pred             EeeeeccCCCC
Q psy12482        402 ESCIPLRSSLE  412 (419)
Q Consensus       402 ~~w~~l~~~~~  412 (419)
                      ++||+|++..+
T Consensus       140 ~~Wh~L~~~~~  150 (157)
T d1uowa_         140 AQWHTLQVEEE  150 (157)
T ss_dssp             EEEEECBCHHH
T ss_pred             eEeEeCCCCcc
Confidence            99999987543

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.1e-29  Score=208.28  Aligned_cols=140  Identities=29%  Similarity=0.400  Sum_probs=127.1

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST  321 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~  321 (419)
                      ...|+|.++++|.|.               .++|.|+|++|+||+..+.+ .+||||+|.+.+++....+++|++++++.
T Consensus         4 ~~~G~l~~sl~Y~~~---------------~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~   68 (145)
T d1dqva2           4 ADLGELNFSLCYLPT---------------AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTL   68 (145)
T ss_dssp             SCCCEEEEEEEEETT---------------TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCS
T ss_pred             CcceEEEEEEEEcCC---------------CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCC
Confidence            356999999999998               79999999999999988877 89999999998876677788999999999


Q ss_pred             CCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceE
Q psy12482        322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWV  401 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i  401 (419)
                      ||+|||.|.|+ ++..++....|.|.|||++.++++++||++.|++..            ....+..||++|+.+|+++|
T Consensus        69 ~P~wne~f~F~-v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~------------~~~~~~~~W~~l~~~p~~~i  135 (145)
T d1dqva2          69 NPTYNEALVFD-VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEA------------ADPHGREHWAEMLANPRKPV  135 (145)
T ss_dssp             SCEEEECCCCC-CCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCT------------TCHHHHHHHHTSSSSSSSCS
T ss_pred             CceecceEEEE-EehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchH------------cCchhhHHHHHHHhCCCCee
Confidence            99999999996 888888888899999999999999999999999965            34556789999999999999


Q ss_pred             EeeeeccCC
Q psy12482        402 ESCIPLRSS  410 (419)
Q Consensus       402 ~~w~~l~~~  410 (419)
                      ++||+|.+.
T Consensus       136 ~~Wh~L~~~  144 (145)
T d1dqva2         136 EHWHQLVEE  144 (145)
T ss_dssp             CSCCCCBBC
T ss_pred             eEeEECCCC
Confidence            999999875

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=3.6e-25  Score=180.48  Aligned_cols=124  Identities=33%  Similarity=0.627  Sum_probs=114.1

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      ..|+|.+++.|.+..+.|+|+|++|+||+.++.. +.+||||++++.+++.  .+++|++++++.||+|||+|.|.++..
T Consensus        19 ~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~-g~~dpyV~v~l~~~~~--~~~kT~~~~~t~~P~wne~f~f~i~~~   95 (143)
T d1rsya_          19 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMG-GTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPYS   95 (143)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTT-SCCCEEEEEEEETTCC--SCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred             cceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCC-CCCCeEEEEEEcCCCC--eeEEEEEeccccCcceeeeeEEEEEee
Confidence            3799999999999999999999999999999887 8999999999987764  368999999999999999999999887


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      ++....|.|+|||++.++++++||++.|+|.++..+....+|++|+.
T Consensus        96 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_          96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             ccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            78888999999999999999999999999999988888889999964

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=7.3e-25  Score=181.46  Aligned_cols=133  Identities=29%  Similarity=0.508  Sum_probs=116.8

Q ss_pred             CceeeeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE
Q psy12482        103 GSVIVKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ  182 (419)
Q Consensus       103 ~~~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~  182 (419)
                      +..+..|+|.++|+|.+..++|.|.|++|+||+..+.. +.+||||++++.+++....+++|++++++.||+|||+|.|.
T Consensus         6 ~~~~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~-~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~   84 (157)
T d1uowa_           6 GILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVG-GLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE   84 (157)
T ss_dssp             TGGGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTT-SCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE
T ss_pred             CCceeeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCC-CCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEE
Confidence            33445899999999999999999999999999998887 88999999999987766667799999999999999999999


Q ss_pred             cccCcccccEEEEEEEecCCCCCCceeEEEEEeCccc------------ccCCCCCceecCccccc
Q psy12482        183 LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENK------------VFDDPSPKCYPLQERSE  236 (419)
Q Consensus       183 v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~------------~~~~~~~~w~~L~~~~~  236 (419)
                      ++..++....|.|+|||++.++++++||++.|++.+.            ....+..+||.|.++.+
T Consensus        85 v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~~~  150 (157)
T d1uowa_          85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEE  150 (157)
T ss_dssp             CCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHHH
T ss_pred             ecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCCcc
Confidence            9999888889999999999999999999999999763            12345678999987644

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=6.5e-25  Score=177.84  Aligned_cols=110  Identities=33%  Similarity=0.483  Sum_probs=97.4

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|.++|+|.+..+.|.|.|++|+||+.++.. +.+||||++++.+++....+++|++++++.||.|||+|.|.++..+
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~-~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~   79 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVS-GLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES   79 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC-------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSS
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCC-CCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHH
Confidence            599999999999999999999999999999886 8899999999987766666789999999999999999999999988


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLEN  218 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~  218 (419)
                      +....|.|.|||++.++++++||++.|++.+
T Consensus        80 ~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~  110 (138)
T d1w15a_          80 LEEISVEFLVLDSERGSRNEVIGRLVLGATA  110 (138)
T ss_dssp             STTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred             hCccEEEEEEEeCCCCCCCCEEEEEEEcchh
Confidence            8888999999999999999999999999976

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=8.2e-25  Score=175.24  Aligned_cols=124  Identities=36%  Similarity=0.652  Sum_probs=109.4

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      .|+|.++|.|.+..++|.|.|++|+||+.++.. +.+||||++++.+++..  +++|++++++.||+|||+|.|.++..+
T Consensus         4 ~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~-g~~dpyv~v~l~~~~~~--~~kT~v~~~t~~P~wne~f~f~v~~~~   80 (130)
T d1dqva1           4 CGRISFALRYLYGSDQLVVRILQALDLPAKDSN-GFSDPYVKIYLLPDRKK--KFQTKVHRKTLNPIFNETFQFSVPLAE   80 (130)
T ss_dssp             SCEEEEEEECCSSSCEEEEEEEEEECCCCCSTT-SCCCEEEEEECTTSTTS--CEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred             cEEEEEEEEEECCCCEEEEEEEeeeCCccccCC-CCcceEEEEEEccCCCc--eEeceeEcCCCCeeeeeEEEEEEchHH
Confidence            699999999999999999999999999999887 88999999999876643  689999999999999999999998888


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCC--CCCceecCccc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDD--PSPKCYPLQER  234 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~w~~L~~~  234 (419)
                      +....|.|+|||++.++++++||++.|++.......  ....|++|.+.
T Consensus        81 ~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~  129 (130)
T d1dqva1          81 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG  129 (130)
T ss_dssp             GSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred             cCCCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence            888899999999999999999999999865433332  34579999764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=3e-24  Score=173.93  Aligned_cols=123  Identities=33%  Similarity=0.600  Sum_probs=107.5

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|.++++|.+..+.|.|.|++|+||+..+.. +.+||||++++.+++....++||++++++.||+|||+|.|.++..+
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~   79 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDAN-GYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD   79 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTT-SCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCC-CCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHH
Confidence            599999999999999999999999999998876 8899999999998776777889999999999999999999999888


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQE  233 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~  233 (419)
                      +....|.|.||+++.++++++||++.+++.++.  ....+|++|.+
T Consensus        80 l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~  123 (137)
T d2cm5a1          80 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLK  123 (137)
T ss_dssp             GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHH
T ss_pred             ccccEEEEEeeeCCCCCCCCEEEEEEeCccccC--cchhhhhhHhh
Confidence            888899999999999999999999999997642  23346766544

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-24  Score=170.86  Aligned_cols=122  Identities=30%  Similarity=0.632  Sum_probs=105.2

Q ss_pred             eEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cccCc
Q psy12482        109 GEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLED  187 (419)
Q Consensus       109 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~~  187 (419)
                      |+|.++|.|.+..++|.|.|++|+||+..+.. +.+||||+|++.++.....+++|++++++.||+|||+|.|. +..++
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~-~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~   79 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDG-RPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE   79 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTS-CCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGG
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCC-CCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhh
Confidence            89999999999999999999999999998876 88999999999987666667899999999999999999997 77788


Q ss_pred             ccccEEEEEEEecCCCC--CCceeEEEEEeCcccccCCCCCceecCc
Q psy12482        188 LECRTLWLSVWHSDMFG--RNDFLGEVMMSLENKVFDDPSPKCYPLQ  232 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~--~~~~iG~~~~~l~~~~~~~~~~~w~~L~  232 (419)
                      +....|.|+|||++.++  ++++||++.|+|+++.... ..+||+|+
T Consensus        80 l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~  125 (125)
T d2bwqa1          80 FRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  125 (125)
T ss_dssp             GGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             cCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence            88889999999998764  4569999999999976544 46899984

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.8e-24  Score=176.33  Aligned_cols=127  Identities=39%  Similarity=0.775  Sum_probs=111.8

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCC---------CeeecccccCCCCceecc
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKA---------GKRKTRVKKHTLSPVFDE  177 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~---------~~~kT~~~~~t~nP~wne  177 (419)
                      ..|+|.+++.|.  .+.|.|.|++|+||+.++.. |.+||||++++.++....         .+++|++++++.||.|||
T Consensus         5 ~~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~-g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne   81 (142)
T d1rh8a_           5 ITGEIQLQINYD--LGNLIIHILQARNLVPRDNN-GYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ   81 (142)
T ss_dssp             CCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSS-SCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred             cceEEEEEEEEe--CCEEEEEEEEeECCCCcCCC-CCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEE
Confidence            479999999996  68999999999999999887 899999999997554332         236899999999999999


Q ss_pred             EEEEE-cccCcccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCccccc
Q psy12482        178 VLKFQ-LTLEDLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSE  236 (419)
Q Consensus       178 ~f~f~-v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~  236 (419)
                      .|.|. ++.+++....|.|+|||++.++++++||++.|+|.++.......+||+|.++.+
T Consensus        82 ~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~~  141 (142)
T d1rh8a_          82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE  141 (142)
T ss_dssp             EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCCC
T ss_pred             EEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcCC
Confidence            99998 666777788999999999999999999999999999988888899999988753

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.3e-24  Score=177.71  Aligned_cols=111  Identities=33%  Similarity=0.528  Sum_probs=103.8

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      .|+|.++|+|.+..+.|.|.|++|+||+..+.. +.+||||+|++.+++....+++|++++++.||+|||+|.|.++.++
T Consensus         6 ~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~-~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~   84 (145)
T d1dqva2           6 LGELNFSLCYLPTAGLLTVTIIKASNLKAMDLT-GFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES   84 (145)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSSS-SCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGG
T ss_pred             ceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCC-CCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhh
Confidence            799999999999999999999999999988876 8899999999998877777789999999999999999999999888


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCccc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENK  219 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~  219 (419)
                      +....|.|.|||++.++++++||++.|+++.+
T Consensus        85 ~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~  116 (145)
T d1dqva2          85 VENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA  116 (145)
T ss_dssp             GGSCCCCCEEEECCSSSCCEEEEECCCSSCTT
T ss_pred             cCCCEEEEEEEecCCCCCCcEEEEEEECchHc
Confidence            88889999999999999999999999999865

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-23  Score=168.82  Aligned_cols=124  Identities=20%  Similarity=0.272  Sum_probs=111.5

Q ss_pred             eeeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccC
Q psy12482        107 VKGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLE  186 (419)
Q Consensus       107 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~  186 (419)
                      ..|+|++++.|....+.|.|+|++|++|+.   . +.+||||++++.++.. ...++|++++++.||+|||+|.|.+...
T Consensus        11 ~~~~l~~sl~y~~~~~~L~V~v~~a~~L~~---~-g~~dpyVkv~l~~~~~-~~~~kT~v~~~~~~P~wne~f~f~v~~~   85 (138)
T d1wfma_          11 QAPKLHYCLDYDCQKAELFVTRLEAVTSNH---D-GGCDCYVQGSVANRTG-SVEAQTALKKRQLHTTWEEGLVLPLAEE   85 (138)
T ss_dssp             SCCEEEEEEEEETTTTEEEEEEEEEECCCC---S-SCCCEEEEEEEEETTE-EEEEECCCCCCCSSEECSSCEEEECCTT
T ss_pred             cCCEEEEEEEECCCCCEEEEEEEEcCCCCC---C-CCcCcEEEEEECCCCC-ccceeeeEECCCCCceEeeeEEEEeeeh
Confidence            379999999999999999999999999953   2 6789999999987643 2367899999999999999999999988


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      ++....|.|+|||++.++++++||++.|+|.++........|++|.+..
T Consensus        86 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~  134 (138)
T d1wfma_          86 ELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG  134 (138)
T ss_dssp             SSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred             hccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence            8888899999999999999999999999999998888889999998753

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.1e-23  Score=169.29  Aligned_cols=123  Identities=30%  Similarity=0.544  Sum_probs=107.6

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCc
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLED  187 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~  187 (419)
                      +|+|.+++.|.  .+.|.|.|++|+||+.++.. |.+||||++++.+++....+++|+++++|.||+|||+|.|.+....
T Consensus         3 rG~i~l~~~~~--~~~L~V~V~~a~~L~~~d~~-g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   79 (132)
T d1a25a_           3 RGRIYIQAHID--REVLIVVVRDAKNLVPMDPN-GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD   79 (132)
T ss_dssp             TCEEEEEEEES--SSEEEEEEEEEESCCCCSTT-SCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred             ccEEEEEEEec--CCEEEEEEEeeeCCCCCCCC-CCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc
Confidence            79999999884  68999999999999999987 8999999999988766667899999999999999999999986544


Q ss_pred             ccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCCCCceecCcccc
Q psy12482        188 LECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERS  235 (419)
Q Consensus       188 l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~  235 (419)
                      . ...|.|+|||++.++++++||++.|+|.++.. .+..+||+|.+..
T Consensus        80 ~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~-~~~~~W~~L~~~~  125 (132)
T d1a25a_          80 K-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQK-AGVDGWFKLLSQE  125 (132)
T ss_dssp             G-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTT-CCEEEEEECBCHH
T ss_pred             c-CCEEeEEEEecCCCCCCcEeEEEEEeHHHcCC-CCCCeEEECCCCC
Confidence            3 34799999999999999999999999998754 4567899997753

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.2e-23  Score=165.87  Aligned_cols=123  Identities=31%  Similarity=0.581  Sum_probs=107.1

Q ss_pred             eeEEEEEEEEEccCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEE-cccC
Q psy12482        108 KGEVEFGLQYNYKQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQ-LTLE  186 (419)
Q Consensus       108 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~  186 (419)
                      .|+|.++|.|.+..+.|.|+|++|+||+.++..++.+||||++++.+++.  .+++|++++++.||.|||+|.|. ++..
T Consensus         8 ~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~~~   85 (138)
T d1ugka_           8 LGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLDPAFDETFTFYGIPYT   85 (138)
T ss_dssp             CCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTC--SEEECCCCSSCSSCEEEEEEEEECCCST
T ss_pred             CEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCC--EeEeCeeEeCCCCCceeeEEEEeeeCHH
Confidence            79999999999999999999999999999887634589999999998764  47899999999999999999996 7777


Q ss_pred             cccccEEEEEEEecCCCCCCceeEEEEEeCcccccCCC-CCceecCc
Q psy12482        187 DLECRTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDP-SPKCYPLQ  232 (419)
Q Consensus       187 ~l~~~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~-~~~w~~L~  232 (419)
                      ++....|+|+|||.+.++++++||++.|+|.++...+. ...|..+.
T Consensus        86 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~  132 (138)
T d1ugka_          86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII  132 (138)
T ss_dssp             TGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred             HcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence            88888999999999999999999999999999865443 34555543

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=5.3e-23  Score=167.47  Aligned_cols=120  Identities=25%  Similarity=0.458  Sum_probs=103.1

Q ss_pred             ccccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482        243 CSKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRST  321 (419)
Q Consensus       243 ~~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~  321 (419)
                      ...|+|.+++.|.+.               .++|.|+|++|+||+.++.. .+||||+|.+.+.+  ..+++|++++++.
T Consensus        18 ~~~G~l~~sl~y~~~---------------~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~--~~~~kT~~~~~t~   80 (143)
T d1rsya_          18 EKLGKLQYSLDYDFQ---------------NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK--KKKFETKVHRKTL   80 (143)
T ss_dssp             CCCCEEEEEEEEETT---------------TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC--CSCEECCCCTTCS
T ss_pred             hcceEEEEEEEEeCC---------------CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCC--CeeEEEEEecccc
Confidence            456999999999988               79999999999999998887 89999999998654  3468999999999


Q ss_pred             CCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCCcCCceeecc
Q psy12482        322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWM  380 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~  380 (419)
                      ||+|||.|.|+ ++..++....|.|+|||++.++++++||++.|+|+++........||
T Consensus        81 ~P~wne~f~f~-i~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~  138 (143)
T d1rsya_          81 NPVFNEQFTFK-VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWR  138 (143)
T ss_dssp             SCEEEEEEEEC-CCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEE
T ss_pred             CcceeeeeEEE-EEeeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEE
Confidence            99999999996 88888888889999999999999999999999998753333333333

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.1e-23  Score=162.43  Aligned_cols=112  Identities=36%  Similarity=0.603  Sum_probs=96.8

Q ss_pred             cceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCc
Q psy12482        246 GELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQ  324 (419)
Q Consensus       246 G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~  324 (419)
                      |+|.+++.|.+.               .++|.|+|++|+||+..+.+ .+||||+|.+.++.....+++|++++++.||.
T Consensus         1 G~l~l~l~y~~~---------------~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~   65 (125)
T d2bwqa1           1 GQLSIKLWFDKV---------------GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK   65 (125)
T ss_dssp             CEEEEEEEEETT---------------TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCE
T ss_pred             CEEEEEEEEECC---------------CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCE
Confidence            899999999998               79999999999999998887 99999999998876677789999999999999


Q ss_pred             cccEEEEcccCccccccCeEEEEEEECCCCC--CCceeEEEEEeCCCCCc
Q psy12482        325 WNHTVVYRDVSLEELSERCLELTVWDHDRLT--SNEFLGGIRLNLGHGKH  372 (419)
Q Consensus       325 wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~--~~~~lG~~~i~l~~~~~  372 (419)
                      |||.|.|..++..++....|.|+|||++.++  ++++||++.|+|+++..
T Consensus        66 wne~f~f~~~~~~~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~  115 (125)
T d2bwqa1          66 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALL  115 (125)
T ss_dssp             EEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCC
T ss_pred             EccEEEEeeeChhhcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCC
Confidence            9999999647778888888999999999764  45699999999988543

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=6.8e-23  Score=163.92  Aligned_cols=108  Identities=31%  Similarity=0.519  Sum_probs=97.2

Q ss_pred             cccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482        244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTS  322 (419)
Q Consensus       244 ~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n  322 (419)
                      ..|+|.++++|.+.               .++|.|+|++|+||+.++.+ .+||||++.+.++.  ..+++|++++++.|
T Consensus         3 p~G~l~~sl~y~~~---------------~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~--~~~~kT~v~~~t~~   65 (130)
T d1dqva1           3 PCGRISFALRYLYG---------------SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR--KKKFQTKVHRKTLN   65 (130)
T ss_dssp             SSCEEEEEEECCSS---------------SCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTST--TSCEECCCCCSCSS
T ss_pred             CcEEEEEEEEEECC---------------CCEEEEEEEeeeCCccccCCCCcceEEEEEEccCC--CceEeceeEcCCCC
Confidence            45999999999988               79999999999999998887 89999999987643  34689999999999


Q ss_pred             CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482        323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~  369 (419)
                      |+|||.|.|. ++..++....|.|+|||++.++++++||++.|++..
T Consensus        66 P~wne~f~f~-v~~~~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~  111 (130)
T d1dqva1          66 PIFNETFQFS-VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLL  111 (130)
T ss_dssp             CEEEEEEEEE-CCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTT
T ss_pred             eeeeeEEEEE-EchHHcCCCeEEEEEEEcCCCCCCceEEEEEECchh
Confidence            9999999996 888888888899999999999999999999998644

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.1e-22  Score=161.65  Aligned_cols=107  Identities=31%  Similarity=0.613  Sum_probs=94.5

Q ss_pred             cccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCC
Q psy12482        244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTS  322 (419)
Q Consensus       244 ~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~n  322 (419)
                      .+|.|++++.|.                 .+.|.|+|++|+||+.++.+ .+||||+|.+.+......+++|+++++|.|
T Consensus         2 ~rG~i~l~~~~~-----------------~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~n   64 (132)
T d1a25a_           2 RRGRIYIQAHID-----------------REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLN   64 (132)
T ss_dssp             TTCEEEEEEEES-----------------SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSS
T ss_pred             cccEEEEEEEec-----------------CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCC
Confidence            469999999884                 58999999999999999988 899999999988766777899999999999


Q ss_pred             CccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482        323 PQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       323 P~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~  369 (419)
                      |+|||.|.|. ++.... ...|.|+|||++.++++++||.+.|+|++
T Consensus        65 P~wne~f~f~-v~~~~~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~  109 (132)
T d1a25a_          65 PEWNETFRFQ-LKESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISE  109 (132)
T ss_dssp             CEEEEEEEEE-CCSGGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHH
T ss_pred             CccceEEEEE-eEcccc-CCEEeEEEEecCCCCCCcEeEEEEEeHHH
Confidence            9999999996 654333 34699999999999999999999999965

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=8e-23  Score=166.46  Aligned_cols=110  Identities=39%  Similarity=0.782  Sum_probs=96.1

Q ss_pred             cccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCC---------cceee
Q psy12482        244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGR---------ASKHK  313 (419)
Q Consensus       244 ~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~---------~~~~~  313 (419)
                      ..|+|.+++.|.                 .+.|.|.|++|+||+.++.. .+||||+|.+.+....         ..+++
T Consensus         5 ~~G~l~lsl~y~-----------------~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~k   67 (142)
T d1rh8a_           5 ITGEIQLQINYD-----------------LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRR   67 (142)
T ss_dssp             CCCEEEEEEEEE-----------------TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTT
T ss_pred             cceEEEEEEEEe-----------------CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeee
Confidence            459999999995                 48999999999999999888 9999999998654322         23468


Q ss_pred             cccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        314 TGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       314 T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      |++++++.||.|||.|.|..++..++....|.|+|||++.++++++||++.|+|+++
T Consensus        68 T~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l  124 (142)
T d1rh8a_          68 TKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST  124 (142)
T ss_dssp             TTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSC
T ss_pred             ccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHc
Confidence            999999999999999999757777788888999999999999999999999999874

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.9e-23  Score=165.59  Aligned_cols=110  Identities=25%  Similarity=0.477  Sum_probs=98.3

Q ss_pred             cccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCC--CCCcEEEEEEeCCCCCcceeecccccCCC
Q psy12482        244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSN--TVDAFCKAYLLPDKGRASKHKTGIIKRST  321 (419)
Q Consensus       244 ~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~--~~dpyV~v~~~~~~~~~~~~~T~~~~~t~  321 (419)
                      ..|+|+++++|.+.               .+.|.|+|++|+||+.++..  .+||||+|.+.+..  ..+++|++++++.
T Consensus         7 ~~G~l~~sl~Y~~~---------------~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~--~~~~kT~v~~~t~   69 (138)
T d1ugka_           7 GLGTLFFSLEYNFE---------------RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEK--KHKVKTRVLRKTL   69 (138)
T ss_dssp             CCCEEEEEEEEEGG---------------GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTT--CSEEECCCCSSCS
T ss_pred             CCEEEEEEEEEeCC---------------CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCC--CEeEeCeeEeCCC
Confidence            45999999999987               79999999999999988766  57999999998653  4468899999999


Q ss_pred             CCccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCC
Q psy12482        322 SPQWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       322 nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      ||.|||.|.|..++..++....|.|+|||++.++++++||++.|+|+++
T Consensus        70 nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~  118 (138)
T d1ugka_          70 DPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI  118 (138)
T ss_dssp             SCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTC
T ss_pred             CCceeeEEEEeeeCHHHcccceEEEEEEECCCCCCCcEEEEEEEEcccc
Confidence            9999999999647777888888999999999999999999999999885

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.3e-22  Score=157.87  Aligned_cols=121  Identities=25%  Similarity=0.403  Sum_probs=101.6

Q ss_pred             cCCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEe
Q psy12482        120 KQGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWH  199 (419)
Q Consensus       120 ~~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d  199 (419)
                      +.|.|+|+|++|++|+..+.. |.+||||++++.     ..+++|++++++.||+|||+|.|.+...   ...|.|+|||
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~-g~~Dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~L~i~V~d   74 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFS-GKSDPFCLLELG-----NDRLQTHTVYKNLNPEWNKVFTFPIKDI---HDVLEVTVFD   74 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSS-SCCCEEEEEEET-----TEEEECCCCSSCSSCCCCEEEEEEESCT---TCEEEEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCC-CCcCeEEEEEcC-----CeEEEEEeeCCceeEEEEEEEEEEEecc---CceeEEEEEE
Confidence            468899999999999999887 899999999995     3468999999999999999999998652   3489999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEe
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      ++.++++++||++.++|.++..+  ..+|+.|......    ...+|+|+|++.|.
T Consensus        75 ~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~l~~~~~~----~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          75 EDGDKPPDFLGKVAIPLLSIRDG--QPNCYVLKNKDLE----QAFKGVIYLEMDLI  124 (126)
T ss_dssp             EETTEEEEECCBCEEEGGGCCSS--CCEECCCBCSCTT----SCCSSEEEEEEEEE
T ss_pred             ccCCcCcceEEEEEEEHHHCCCC--CceEEEccccCCC----CceeEEEEEEEEEE
Confidence            99998999999999999987543  3579888654332    34569999998875

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.7e-21  Score=153.39  Aligned_cols=109  Identities=23%  Similarity=0.308  Sum_probs=96.1

Q ss_pred             cccceEEEEEEeCCCCCccccccccCCCCcceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCC
Q psy12482        244 SKGELIIGLKFVPPEDSSLSSAKKSSSAAKGSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSP  323 (419)
Q Consensus       244 ~~G~l~l~l~~~~~~~~~~~~~~~~~~~~~~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP  323 (419)
                      ..|+|++++.|.+.               .++|.|+|++|+||+.  .+.+||||++.+.+.. ....++|++++++.||
T Consensus        11 ~~~~l~~sl~y~~~---------------~~~L~V~v~~a~~L~~--~g~~dpyVkv~l~~~~-~~~~~kT~v~~~~~~P   72 (138)
T d1wfma_          11 QAPKLHYCLDYDCQ---------------KAELFVTRLEAVTSNH--DGGCDCYVQGSVANRT-GSVEAQTALKKRQLHT   72 (138)
T ss_dssp             SCCEEEEEEEEETT---------------TTEEEEEEEEEECCCC--SSCCCEEEEEEEEETT-EEEEEECCCCCCCSSE
T ss_pred             cCCEEEEEEEECCC---------------CCEEEEEEEEcCCCCC--CCCcCcEEEEEECCCC-CccceeeeEECCCCCc
Confidence            45899999999988               7999999999999953  2368999999998663 3456889999999999


Q ss_pred             ccccEEEEcccCccccccCeEEEEEEECCCCCCCceeEEEEEeCCCCC
Q psy12482        324 QWNHTVVYRDVSLEELSERCLELTVWDHDRLTSNEFLGGIRLNLGHGK  371 (419)
Q Consensus       324 ~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~~~~~~lG~~~i~l~~~~  371 (419)
                      +|||.|.|+ ++..++....|.|+|||++.++++++||++.|+|+++.
T Consensus        73 ~wne~f~f~-v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~  119 (138)
T d1wfma_          73 TWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS  119 (138)
T ss_dssp             ECSSCEEEE-CCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSS
T ss_pred             eEeeeEEEE-eeehhccceEEEEEEeeecccccceeeeEEEEEhHHcc
Confidence            999999997 88888888889999999999999999999999998853

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.9e-21  Score=153.62  Aligned_cols=121  Identities=15%  Similarity=0.315  Sum_probs=101.1

Q ss_pred             CCEEEEEEEeecCCCCCC---CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEE
Q psy12482        121 QGALEIHVKQCKDLAPVD---TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSV  197 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~---~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v  197 (419)
                      +++|+|+|++|+||+...   .. |.+||||++.+.+..  ..+++|++++++.||.|||+|.|.+...  ....|.|+|
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~-~~~Dpyv~v~l~~~~--~~~~~T~~~~~t~nP~wne~f~f~i~~~--~~~~L~v~V   76 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDML-DTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEFILDPN--QENVLEITL   76 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHH-CCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEEEECTT--SCCEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccC-CCCCcEEEEEECCcc--cceeEeeecCCCccceeceeeeecccCc--ccCcEEEEE
Confidence            568999999999998743   23 689999999997554  3468999999999999999999998543  355899999


Q ss_pred             EecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482        198 WHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKFVP  256 (419)
Q Consensus       198 ~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~  256 (419)
                      ||.+.. ++++||++.++|.++..+.....|++|.+...         |+|.+++.+.|
T Consensus        77 ~d~d~~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~---------g~i~~~l~~~~  125 (126)
T d1rlwa_          77 MDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTE---------MVLEMSLEVAS  125 (126)
T ss_dssp             EECCSS-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEE---------EEEEEEEECCC
T ss_pred             EECCCC-CCCeEEEEEEEHHHccCCCeEEEEEEccCCCe---------EEEEEEEEEEe
Confidence            999865 68999999999999988888889999976532         89999888765

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=6.1e-21  Score=153.81  Aligned_cols=122  Identities=25%  Similarity=0.419  Sum_probs=100.4

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEcccCcccccEEEEEEEe
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTLEDLECRTLWLSVWH  199 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d  199 (419)
                      .|.|+|+|++|++|+..+.. |.+||||++++..     ..++|++++ ++.||+|||+|.|.+...   ...|.|+|||
T Consensus         9 ~G~L~V~v~~a~~L~~~d~~-g~~Dpyv~v~~~~-----~~~~t~~~~~~~~nP~Wne~f~f~v~~~---~~~L~v~V~d   79 (136)
T d1wfja_           9 HGTLEVVLVSAKGLEDADFL-NNMDPYVQLTCRT-----QDQKSNVAEGMGTTPEWNETFIFTVSEG---TTELKAKIFD   79 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSS-CSSCCCEEEESSS-----CEEECCCCTTCCSSCEEEEEEEEEEESS---CCEEEEEECC
T ss_pred             cEEEEEEEEEeeCCCCCCCC-CCCCccEEEEEee-----eeEEEEEEecCCCcEEEeeEEEEEEcCc---cceEEEEEEE
Confidence            46899999999999999987 8999999999852     356777776 689999999999998752   3469999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccCC-CCCceecCccccchhhhhhccccceEEEEEEeCCC
Q psy12482        200 SDMFGRNDFLGEVMMSLENKVFDD-PSPKCYPLQERSEILDELICSKGELIIGLKFVPPE  258 (419)
Q Consensus       200 ~~~~~~~~~iG~~~~~l~~~~~~~-~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~~  258 (419)
                      ++.+++|++||++.|+|.++.... ....|+.|....       ...|+|+|++.|.|..
T Consensus        80 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~-------~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE-------EYKGEIWVALSFKPSG  132 (136)
T ss_dssp             SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETT-------EEEEEEEEEEEEEECC
T ss_pred             ecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecCCC-------ccCEEEEEEEEEEeCC
Confidence            999999999999999999875443 346788885432       2459999999999864

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.80  E-value=8.1e-20  Score=146.75  Aligned_cols=118  Identities=19%  Similarity=0.339  Sum_probs=97.7

Q ss_pred             CCEEEEEEEeecCCCCCC----------CCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccc
Q psy12482        121 QGALEIHVKQCKDLAPVD----------TKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLEC  190 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~----------~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~  190 (419)
                      +|.|+|+|++|++|++.+          ...+.+||||+|++..    ....+|++++++.||.|||.|.|.++.    .
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~----~~~~~T~~~~~t~~P~Wne~f~f~v~~----~   76 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD----SRIGQTATKQKTNSPAWHDEFVTDVCN----G   76 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT----EEEEECCCCSSCSSCEEEEEEEEEEEE----E
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCC----CcCcEeeEEcCCCCccCccEEEEEEec----C
Confidence            578999999999998742          1126789999999941    224689999999999999999999864    3


Q ss_pred             cEEEEEEEecCCCCCCceeEEEEEeCcccccCCC--CCceecCccccchhhhhhccccceEEEEEEeCC
Q psy12482        191 RTLWLSVWHSDMFGRNDFLGEVMMSLENKVFDDP--SPKCYPLQERSEILDELICSKGELIIGLKFVPP  257 (419)
Q Consensus       191 ~~l~i~v~d~~~~~~~~~iG~~~~~l~~~~~~~~--~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~~  257 (419)
                      ..|.|+|||.+.++++++||++.|+|+++.....  ...|++|.+.           |+|++.+.+.+.
T Consensus        77 ~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p~-----------G~v~l~v~~~~~  134 (136)
T d1gmia_          77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE-----------GKVYVIIDLSGS  134 (136)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBSS-----------CEEEEEEEEEEE
T ss_pred             CceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCCC-----------cEEEEEEEEEeC
Confidence            4899999999999999999999999999765543  4579999753           999999999875

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=9.1e-19  Score=139.71  Aligned_cols=123  Identities=20%  Similarity=0.296  Sum_probs=92.1

Q ss_pred             CEEEEEEEeecCCCCCC--CCCCCCCcEEEEEEeCCCCCCCeeeccccc-CCCCceeccEEEEEcccCcccccEEEEEEE
Q psy12482        122 GALEIHVKQCKDLAPVD--TKRQRSDPYVKVYLLPDKSKAGKRKTRVKK-HTLSPVFDEVLKFQLTLEDLECRTLWLSVW  198 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~--~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~v~  198 (419)
                      .+|+|.|++|++|+..+  .. +.+||||+|++.+......+++|++++ ++.||.|||+|.|.+...+.  ..|.|+||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~-~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~--~~L~~~V~   80 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKN-SIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVE   80 (131)
T ss_dssp             EEEEEEEEEEESCCCCC------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGG--CEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCC-CCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchh--ceEEEEEE
Confidence            47999999999997543  33 679999999997654445578888876 45799999999998766554  38999999


Q ss_pred             ecCCCCCCceeEEEEEeCcccccCCCCCceecCccccchhhhhhccccceEEEEEE
Q psy12482        199 HSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQERSEILDELICSKGELIIGLKF  254 (419)
Q Consensus       199 d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~  254 (419)
                      |++..+++++||++.|+|.++..+   ..|++|.......    -..|.|.+.+.+
T Consensus        81 D~d~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~----~~~~~L~v~i~~  129 (131)
T d1qasa2          81 DYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQ----HPSATLFVKISI  129 (131)
T ss_dssp             ECCTTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCE----EEEEEEEEEEEE
T ss_pred             EecCCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCC----CCCCEEEEEEEE
Confidence            999999999999999999987432   4588886543221    122566666654

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.3e-19  Score=142.46  Aligned_cols=121  Identities=21%  Similarity=0.254  Sum_probs=92.9

Q ss_pred             CCEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEec
Q psy12482        121 QGALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHS  200 (419)
Q Consensus       121 ~~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~  200 (419)
                      .++|.|+|++|++|+..+.. +.+||||++.+.     .++++|++++++.||.|||.|.|.+..    ...|.|+|||+
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~-~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~wne~f~f~~~~----~~~l~~~V~d~   74 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNW-FGPSPYVEVTVD-----GQSKKTEKCNNTNSPKWKQPLTVIVTP----VSKLHFRVWSH   74 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--C-CCCCEEEEEEET-----TEEEECCCCSSCSSCEEEEEEEEEECT----TCEEEEEEEEC
T ss_pred             ceEEEEEEEEeECCCcCCCC-CCcCeEEEEEEC-----CeEEeeEEEEecccEEEcceEEEEEEe----cceeEEEEEEc
Confidence            35799999999999988876 789999999996     346899999999999999999999865    34899999999


Q ss_pred             CCCCCCceeEEEEEeCcccccCC---CCCceecC--ccccchhhhhhccccceEEEEEEe
Q psy12482        201 DMFGRNDFLGEVMMSLENKVFDD---PSPKCYPL--QERSEILDELICSKGELIIGLKFV  255 (419)
Q Consensus       201 ~~~~~~~~iG~~~~~l~~~~~~~---~~~~w~~L--~~~~~~~~~~~~~~G~l~l~l~~~  255 (419)
                      +.+++|++||++.++|.++....   ....|+.|  ......    ....|+|.+.+.+.
T Consensus        75 d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~----~~~~G~L~v~l~~~  130 (133)
T d2nq3a1          75 QTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEP----TETIGDLSICLDGL  130 (133)
T ss_dssp             CSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCT----TSEEEEEEEEEESE
T ss_pred             cCCCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCC----ceEEEEEEEEEeeE
Confidence            99999999999999998864321   12334443  322221    33458888877664

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=1e-18  Score=139.46  Aligned_cols=105  Identities=21%  Similarity=0.303  Sum_probs=82.5

Q ss_pred             ceEEEEEeccccccccC--CC-CCCcEEEEEEeCCCCCcceeecccccCC-CCCccccEEEEcccCccccccCeEEEEEE
Q psy12482        274 GSLHVLIKEAKSLCPVK--SN-TVDAFCKAYLLPDKGRASKHKTGIIKRS-TSPQWNHTVVYRDVSLEELSERCLELTVW  349 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~--~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t-~nP~wne~f~f~~v~~~~~~~~~l~i~V~  349 (419)
                      .+|+|.|++|++|+..+  .+ .+||||+|.+.+......+++|++++++ +||+|||+|.|. +...+.  ..|.|+||
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~-~~~~~~--~~L~~~V~   80 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE-VTVPDL--ALVRFMVE   80 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEE-ESCGGG--CEEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEE-EEcchh--ceEEEEEE
Confidence            58999999999997654  34 7899999999876556677889987765 799999999996 544433  56999999


Q ss_pred             ECCCCCCCceeEEEEEeCCCCCcCCceeeccc
Q psy12482        350 DHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMD  381 (419)
Q Consensus       350 d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~  381 (419)
                      |++..+++++||++.|+|+.+..+.+..++++
T Consensus        81 D~d~~~~d~~iG~~~i~l~~l~~g~~~~~L~~  112 (131)
T d1qasa2          81 DYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLS  112 (131)
T ss_dssp             ECCTTTCCEEEEEEEEEGGGBCCEEEEEEEEC
T ss_pred             EecCCCCCcEEEEEEEEEeccCCCCEEEECCC
Confidence            99999999999999999988654433333333

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.9e-19  Score=140.42  Aligned_cols=93  Identities=25%  Similarity=0.430  Sum_probs=80.7

Q ss_pred             CcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEE
Q psy12482        272 AKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWD  350 (419)
Q Consensus       272 ~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d  350 (419)
                      ..|.|+|+|++|+||+.++.. .+||||++.+..     .+++|++++++.||+|||.|.|. ++  ... ..|.|+|||
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~-v~--~~~-~~L~i~V~d   74 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-----DRLQTHTVYKNLNPEWNKVFTFP-IK--DIH-DVLEVTVFD   74 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-----EEEECCCCSSCSSCCCCEEEEEE-ES--CTT-CEEEEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC-----eEEEEEeeCCceeEEEEEEEEEE-Ee--ccC-ceeEEEEEE
Confidence            369999999999999999887 999999999832     45899999999999999999996 54  222 569999999


Q ss_pred             CCCCCCCceeEEEEEeCCCCCcC
Q psy12482        351 HDRLTSNEFLGGIRLNLGHGKHY  373 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~~~~  373 (419)
                      ++.++++++||++.|+|+++...
T Consensus        75 ~~~~~~d~~lG~~~i~l~~l~~~   97 (126)
T d2ep6a1          75 EDGDKPPDFLGKVAIPLLSIRDG   97 (126)
T ss_dssp             EETTEEEEECCBCEEEGGGCCSS
T ss_pred             ccCCcCcceEEEEEEEHHHCCCC
Confidence            99999999999999999886543

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.74  E-value=5.4e-18  Score=135.92  Aligned_cols=88  Identities=23%  Similarity=0.400  Sum_probs=75.8

Q ss_pred             cceEEEEEeccccccccC-----------CC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccc
Q psy12482        273 KGSLHVLIKEAKSLCPVK-----------SN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELS  340 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~-----------~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~  340 (419)
                      .|.|+|+|++|++|++.+           .. .+||||+|.+    +.....+|.++.++.||+|||.|.|+ ++.    
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l----~~~~~~~T~~~~~t~~P~Wne~f~f~-v~~----   75 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTNSPAWHDEFVTD-VCN----   75 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEE----TTEEEEECCCCSSCSSCEEEEEEEEE-EEE----
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEe----CCCcCcEeeEEcCCCCccCccEEEEE-Eec----
Confidence            699999999999998753           22 7899999999    45566789999999999999999996 542    


Q ss_pred             cCeEEEEEEECCCCCCCceeEEEEEeCCC
Q psy12482        341 ERCLELTVWDHDRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       341 ~~~l~i~V~d~~~~~~~~~lG~~~i~l~~  369 (419)
                      ...|.|+|||++.+++|++||.+.|+|++
T Consensus        76 ~~~l~i~V~d~~~~~~d~~iG~~~i~l~~  104 (136)
T d1gmia_          76 GRKIELAVFHDAPIGYDDFVANCTIQFEE  104 (136)
T ss_dssp             ECEEEEEEEECCSSSSCEEEEEEEEEHHH
T ss_pred             CCceEEEEEEecCCCCceeEEEEEEEHHH
Confidence            25699999999999999999999999955

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.3e-17  Score=131.31  Aligned_cols=119  Identities=16%  Similarity=0.240  Sum_probs=88.1

Q ss_pred             CEEEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecC
Q psy12482        122 GALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSD  201 (419)
Q Consensus       122 ~~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~  201 (419)
                      +.|.|+|.+|++|.+.+    ..||||++.+.     ..+.+|.+++ +.||+|||.|.|.+...   ...|.|+|||.+
T Consensus         2 ~~L~V~v~~a~~l~~~~----~~dpYv~l~~~-----~~k~~T~~~k-~~nP~Wne~f~f~v~~~---~~~L~v~V~d~~   68 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE----KFNTYVTLKVQ-----NVKSTTIAVR-GSQPSWEQDFMFEINRL---DLGLTVEVWNKG   68 (128)
T ss_dssp             EEEEEEEEEEECSSCGG----GCEEEEEEEET-----TEEEECCCEE-SSSCEEEEEEEEEECCC---SSEEEEEEEECC
T ss_pred             eEEEEEEEEEECCCCCC----CcCeEEEEEeC-----CEEEEEEEec-CCCCeEEEEEEEeeccc---cceEEEEEEeCC
Confidence            46999999999999864    46999999995     3467888876 45999999999998653   358999999998


Q ss_pred             CCCCCceeEEEEEeCcccccC--CCCCceecCccccchhh-----hhhccccceEEEEEE
Q psy12482        202 MFGRNDFLGEVMMSLENKVFD--DPSPKCYPLQERSEILD-----ELICSKGELIIGLKF  254 (419)
Q Consensus       202 ~~~~~~~iG~~~~~l~~~~~~--~~~~~w~~L~~~~~~~~-----~~~~~~G~l~l~l~~  254 (419)
                      .. +|++||++.|+|+++..+  ....+||+|..+.....     ......+.|+++++|
T Consensus        69 ~~-~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          69 LI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             SS-CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             Cc-CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            76 689999999999998544  34568999976542211     112233456666665

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.1e-18  Score=134.09  Aligned_cols=104  Identities=19%  Similarity=0.235  Sum_probs=81.6

Q ss_pred             cceEEEEEeccccccccCC---C-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEE
Q psy12482        273 KGSLHVLIKEAKSLCPVKS---N-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTV  348 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~---~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V  348 (419)
                      .++|+|+|++|+||+....   . .+||||++.+.+.  ...+++|+++.++.||.|||.|.|. +.  ......|.|+|
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~--~~~~~~T~~~~~t~nP~wne~f~f~-i~--~~~~~~L~v~V   76 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT--PDSRKRTRHFNNDINPVWNETFEFI-LD--PNQENVLEITL   76 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTS--TTCCEECCCCTTCSSCEEEEEEEEE-EC--TTSCCEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCc--ccceeEeeecCCCccceeceeeeec-cc--CcccCcEEEEE
Confidence            5799999999999987542   2 7899999998543  2356899999999999999999996 43  44456799999


Q ss_pred             EECCCCCCCceeEEEEEeCCCCCcCCceeecccC
Q psy12482        349 WDHDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDS  382 (419)
Q Consensus       349 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~  382 (419)
                      ||++.. ++++||++.|+|+++..++....||.+
T Consensus        77 ~d~d~~-~d~~lG~~~i~L~~l~~~~~~~~~~~L  109 (126)
T d1rlwa_          77 MDANYV-MDETLGTATFTVSSMKVGEKKEVPFIF  109 (126)
T ss_dssp             EECCSS-CCEEEEEEEEEGGGSCTTCEEEEEEEE
T ss_pred             EECCCC-CCCeEEEEEEEHHHccCCCeEEEEEEc
Confidence            999876 489999999999886444444444443

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.6e-17  Score=131.23  Aligned_cols=87  Identities=23%  Similarity=0.344  Sum_probs=75.3

Q ss_pred             cceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEEC
Q psy12482        273 KGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDH  351 (419)
Q Consensus       273 ~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~  351 (419)
                      .++|.|+|++|++|+..+.. .+||||+|.+..     .+++|++++++.||+|||.|.|+ +...    ..|.|+|||+
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~-~~~~----~~l~~~V~d~   74 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-----QSKKTEKCNNTNSPKWKQPLTVI-VTPV----SKLHFRVWSH   74 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-----EEEECCCCSSCSSCEEEEEEEEE-ECTT----CEEEEEEEEC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC-----eEEeeEEEEecccEEEcceEEEE-EEec----ceeEEEEEEc
Confidence            58899999999999988877 899999999832     35899999999999999999996 6432    4699999999


Q ss_pred             CCCCCCceeEEEEEeCCC
Q psy12482        352 DRLTSNEFLGGIRLNLGH  369 (419)
Q Consensus       352 ~~~~~~~~lG~~~i~l~~  369 (419)
                      +.+++|++||++.|+|++
T Consensus        75 d~~~~d~~iG~~~i~L~~   92 (133)
T d2nq3a1          75 QTLKSDVLLGTAALDIYE   92 (133)
T ss_dssp             CSSSCCEEEEEEEEEHHH
T ss_pred             cCCCCCceEEEEEEEHHH
Confidence            999999999999999865

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.69  E-value=1.4e-17  Score=133.76  Aligned_cols=90  Identities=23%  Similarity=0.378  Sum_probs=76.1

Q ss_pred             CcceEEEEEeccccccccCCC-CCCcEEEEEEeCCCCCcceeeccccc-CCCCCccccEEEEcccCccccccCeEEEEEE
Q psy12482        272 AKGSLHVLIKEAKSLCPVKSN-TVDAFCKAYLLPDKGRASKHKTGIIK-RSTSPQWNHTVVYRDVSLEELSERCLELTVW  349 (419)
Q Consensus       272 ~~~~l~v~v~~a~~L~~~~~~-~~dpyV~v~~~~~~~~~~~~~T~~~~-~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~  349 (419)
                      +.|.|+|+|++|++|+..+.. ++||||++.+..     ..++|++++ ++.||+|||.|.|. +..  . ...|.|+||
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~-----~~~~t~~~~~~~~nP~Wne~f~f~-v~~--~-~~~L~v~V~   78 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-----QDQKSNVAEGMGTTPEWNETFIFT-VSE--G-TTELKAKIF   78 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-----CEEECCCCTTCCSSCEEEEEEEEE-EES--S-CCEEEEEEC
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee-----eeEEEEEEecCCCcEEEeeEEEEE-EcC--c-cceEEEEEE
Confidence            369999999999999999887 999999999843     246777776 58999999999996 432  2 245999999


Q ss_pred             ECCCCCCCceeEEEEEeCCCC
Q psy12482        350 DHDRLTSNEFLGGIRLNLGHG  370 (419)
Q Consensus       350 d~~~~~~~~~lG~~~i~l~~~  370 (419)
                      |++.+++|++||++.|+|.++
T Consensus        79 d~d~~~~d~~iG~~~i~L~~l   99 (136)
T d1wfja_          79 DKDVGTEDDAVGEATIPLEPV   99 (136)
T ss_dssp             CSSSCTTTCCSEEEEEESHHH
T ss_pred             EecCCCCCCEEEEEEEEhHHh
Confidence            999999999999999999875

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=4.9e-17  Score=127.43  Aligned_cols=111  Identities=13%  Similarity=0.200  Sum_probs=84.9

Q ss_pred             EEEEEEeecCCCCCCCCCCCCCcEEEEEEeCCCCCCCeeecccccCCCCceeccEEEEEcccCcccccEEEEEEEecCCC
Q psy12482        124 LEIHVKQCKDLAPVDTKRQRSDPYVKVYLLPDKSKAGKRKTRVKKHTLSPVFDEVLKFQLTLEDLECRTLWLSVWHSDMF  203 (419)
Q Consensus       124 L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~i~v~d~~~~  203 (419)
                      +.|.+..+..++..   ++.+||||+|++.+.......++|+++++|+||+|||+|.|.+..    ...|.|.|||++  
T Consensus         7 ~~~~~~~~~~~~~~---~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~----~~~l~i~V~d~d--   77 (123)
T d1bdya_           7 ISFNSYELGSLQAE---DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMRAA--   77 (123)
T ss_dssp             EEEEEEECCTTCCC---CCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT----TCEEEEEEEEET--
T ss_pred             EEEEEeecccCCCC---CCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc----ccEEEEEEEEcc--
Confidence            44445555554444   378999999999754333335679999999999999999999865    348999999975  


Q ss_pred             CCCceeEEEEEeCccccc-----CCCCCceecCccccchhhhhhccccceEEEEEEeC
Q psy12482        204 GRNDFLGEVMMSLENKVF-----DDPSPKCYPLQERSEILDELICSKGELIIGLKFVP  256 (419)
Q Consensus       204 ~~~~~iG~~~~~l~~~~~-----~~~~~~w~~L~~~~~~~~~~~~~~G~l~l~l~~~~  256 (419)
                        ++++|.+.+++.++..     +.....|++|.+.           |+|++++.|.+
T Consensus        78 --d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~~-----------Gkl~l~v~~f~  122 (123)
T d1bdya_          78 --EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ-----------AKVLMCVQYFL  122 (123)
T ss_dssp             --TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBSS-----------CEEEEEEEEEE
T ss_pred             --ccccCccEEehhheeeccccCCCcccEEEeCCCC-----------EEEEEEEEEec
Confidence              6899999999988743     3345689999753           99999999864

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.3e-16  Score=124.04  Aligned_cols=99  Identities=16%  Similarity=0.361  Sum_probs=77.2

Q ss_pred             ceEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCC
Q psy12482        274 GSLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDR  353 (419)
Q Consensus       274 ~~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~  353 (419)
                      +.|.|+|.+|++|.+.+  +.||||++.+.     ..+.+|.+++ +.||+|||.|.|. +.  +. ...|.|+|||++.
T Consensus         2 ~~L~V~v~~a~~l~~~~--~~dpYv~l~~~-----~~k~~T~~~k-~~nP~Wne~f~f~-v~--~~-~~~L~v~V~d~~~   69 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE--KFNTYVTLKVQ-----NVKSTTIAVR-GSQPSWEQDFMFE-IN--RL-DLGLTVEVWNKGL   69 (128)
T ss_dssp             EEEEEEEEEEECSSCGG--GCEEEEEEEET-----TEEEECCCEE-SSSCEEEEEEEEE-EC--CC-SSEEEEEEEECCS
T ss_pred             eEEEEEEEEEECCCCCC--CcCeEEEEEeC-----CEEEEEEEec-CCCCeEEEEEEEe-ec--cc-cceEEEEEEeCCC
Confidence            57999999999999877  57999999993     2457888876 5699999999996 53  23 3459999999988


Q ss_pred             CCCCceeEEEEEeCCCCCcCC--ceeecccCCch
Q psy12482        354 LTSNEFLGGIRLNLGHGKHYS--KLVDWMDSSGK  385 (419)
Q Consensus       354 ~~~~~~lG~~~i~l~~~~~~~--~~~~w~~~~g~  385 (419)
                      . +|++||++.|+|+++...+  ....||.+..+
T Consensus        70 ~-~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          70 I-WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             S-CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             c-CCcceEEEEEEehhhccCCCCCCCeeEECCcc
Confidence            7 4899999999999975332  23367776543

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.3e-15  Score=114.23  Aligned_cols=102  Identities=19%  Similarity=0.280  Sum_probs=75.7

Q ss_pred             eEEEEEeccccccccCCCCCCcEEEEEEeCC--C-CCcceeecccccCCCCCccccE-EEEcccCccccccCeEEEEEEE
Q psy12482        275 SLHVLIKEAKSLCPVKSNTVDAFCKAYLLPD--K-GRASKHKTGIIKRSTSPQWNHT-VVYRDVSLEELSERCLELTVWD  350 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~--~-~~~~~~~T~~~~~t~nP~wne~-f~f~~v~~~~~~~~~l~i~V~d  350 (419)
                      .|.|+|+.|++|+..   ++||||+|.+.+.  . ....+.+|.+..+++||+|||. |.|..+...++  ..|.|.|||
T Consensus         2 tl~V~Visaq~L~~~---~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l--~~L~f~V~D   76 (122)
T d2zkmx2           2 TLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAVME   76 (122)
T ss_dssp             EEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEEEE
T ss_pred             EEEEEEEEeeCCCCC---CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcc--cEEEEEEEC
Confidence            589999999999754   4799999999742  1 1222233333467899999976 44422333333  679999999


Q ss_pred             CCCCCCCceeEEEEEeCCCCCcCCceeecccCCch
Q psy12482        351 HDRLTSNEFLGGIRLNLGHGKHYSKLVDWMDSSGK  385 (419)
Q Consensus       351 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~  385 (419)
                      ++    +++||++.|+++.++.+.+..++++..|+
T Consensus        77 ~d----~~~lG~~~ipl~~l~~GyR~vpL~~~~g~  107 (122)
T d2zkmx2          77 EG----NKFLGHRIIPINALNSGYHHLCLHSESNM  107 (122)
T ss_dssp             TT----TEEEEEEEEEGGGBCCEEEEEEEECTTCC
T ss_pred             CC----CCEEEEEEEEcccCcCCceEEEccCCCcC
Confidence            75    79999999999999888888888887775

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=2e-14  Score=112.29  Aligned_cols=106  Identities=12%  Similarity=0.148  Sum_probs=77.1

Q ss_pred             eEEEEEeccccccccCCCCCCcEEEEEEeCCCCCcceeecccccCCCCCccccEEEEcccCccccccCeEEEEEEECCCC
Q psy12482        275 SLHVLIKEAKSLCPVKSNTVDAFCKAYLLPDKGRASKHKTGIIKRSTSPQWNHTVVYRDVSLEELSERCLELTVWDHDRL  354 (419)
Q Consensus       275 ~l~v~v~~a~~L~~~~~~~~dpyV~v~~~~~~~~~~~~~T~~~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~~~~  354 (419)
                      ++.|.++.+..++.. .+.+||||+|.+.+.......++|.++++|+||+|||+|.|. +..    ...|.|.|||+|  
T Consensus         6 ~~~~~~~~~~~~~~~-~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~-v~~----~~~l~i~V~d~d--   77 (123)
T d1bdya_           6 RISFNSYELGSLQAE-DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAH-IYE----GRVIQIVLMRAA--   77 (123)
T ss_dssp             EEEEEEEECCTTCCC-CCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEE-CCT----TCEEEEEEEEET--
T ss_pred             EEEEEEeecccCCCC-CCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEE-Ecc----ccEEEEEEEEcc--
Confidence            445555555554432 338999999999765444455789999999999999999996 542    246999999976  


Q ss_pred             CCCceeEEEEEeCCCCCcCCceeecccCCchhHHHHHHHHhCCCceEEeeeeccCC
Q psy12482        355 TSNEFLGGIRLNLGHGKHYSKLVDWMDSSGKEILLWQQMMERPNFWVESCIPLRSS  410 (419)
Q Consensus       355 ~~~~~lG~~~i~l~~~~~~~~~~~w~~~~g~~~~~W~~l~~~p~~~i~~w~~l~~~  410 (419)
                        ++++|.+.|++..+                    ..-....+...+.|+.|++.
T Consensus        78 --d~~~g~~~i~l~~l--------------------~~~~~~~~~~~~~W~~L~~~  111 (123)
T d1bdya_          78 --EDPMSEVTVGVSVL--------------------AERCKKNNGKAEFWLDLQPQ  111 (123)
T ss_dssp             --TEEEEEEEEEHHHH--------------------HHHHHTTTTEEEEEEECBSS
T ss_pred             --ccccCccEEehhhe--------------------eeccccCCCcccEEEeCCCC
Confidence              78999999998542                    22233567788899999754

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-13  Score=107.44  Aligned_cols=98  Identities=22%  Similarity=0.347  Sum_probs=69.4

Q ss_pred             EEEEEEEeecCCCCCCCCCCCCCcEEEEEEeC---CCCCCCeeecccccCCCCceeccE-EEEE-cccCcccccEEEEEE
Q psy12482        123 ALEIHVKQCKDLAPVDTKRQRSDPYVKVYLLP---DKSKAGKRKTRVKKHTLSPVFDEV-LKFQ-LTLEDLECRTLWLSV  197 (419)
Q Consensus       123 ~L~v~v~~a~~L~~~~~~~~~~dpyv~v~l~~---~~~~~~~~kT~~~~~t~nP~wne~-f~f~-v~~~~l~~~~l~i~v  197 (419)
                      .|.|.|++|++|+..     ..||||+|++.+   +..+..+.+|.+..++.||+|||. |.|. +...++  ..|.|.|
T Consensus         2 tl~V~Visaq~L~~~-----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l--~~L~f~V   74 (122)
T d2zkmx2           2 TLSITVISGQFLSER-----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAV   74 (122)
T ss_dssp             EEEEEEEEEESCCSS-----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEE
T ss_pred             EEEEEEEEeeCCCCC-----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcc--cEEEEEE
Confidence            589999999999753     469999999963   222222223333568999999975 4443 444444  4899999


Q ss_pred             EecCCCCCCceeEEEEEeCcccccCCCCCceecCccc
Q psy12482        198 WHSDMFGRNDFLGEVMMSLENKVFDDPSPKCYPLQER  234 (419)
Q Consensus       198 ~d~~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~  234 (419)
                      ||++    +++||++.++++.+..+   -.|.+|...
T Consensus        75 ~D~d----~~~lG~~~ipl~~l~~G---yR~vpL~~~  104 (122)
T d2zkmx2          75 MEEG----NKFLGHRIIPINALNSG---YHHLCLHSE  104 (122)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCE---EEEEEEECT
T ss_pred             ECCC----CCEEEEEEEEcccCcCC---ceEEEccCC
Confidence            9975    79999999999886432   356677554