Psyllid ID: psy12521

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
RSEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMSGPTAKLKSVTGFSSSIFPQG
cccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHccEEEEEccccEEcccccEEEEEEEEEcccccEEEEcccccccccccccccccEEccccccccccccccEEEEEEEcccccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHccEEEEEccccccccccccccccccccccccEEEEEEEEEEcccccEEccccccccEEEEEEcccHHHHHHHHHccccccccHHHHHHHHccccccccccccccccccccc
cccccccHHHHHHHHEEEEEcccccccccccccccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEEEccccEccHEEccccccccccEEEEEEcccccccccEcccEEEEEEEEEcccccHHHHHHHHHHccEEEEccccccccccccHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccEEEEccEEEEcccccEEEcccccccEEEEEEEcHHHHHHHHHHccHHHcccHHHHHHHHHHccccccccccccccEEccc
rseifhspaiangYFTCAInrvgsetfpnqftsgdgkpahtefghfygssyitapngtrtpvsrnssivtfdyffpqlcikynmvivspilerddvtdIIWNTAVVINNhgrvmgkhrknhiprvgdfnestyyfegntghpvfetefgRIAINIcygrhhplnwlmfglngaeivfnpsatitglseplwgieARNAAIANGYFTCAInrvgsetfpnqftsgdgkpahtqfghfygssyitapngtrtpglsrvrDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSmsgptaklksvtgfsssifpqg
rseifhspaiangyFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVInnhgrvmgkhrknhiprvgdfNESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMSgptaklksvtgfsssifpqg
RSEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMSGPTAKLKSVTGFSSSIFPQG
****FHSPAIANGYFTCAINRVGSETFPNQF*******AHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFT******AHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQS**********************
****FHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMSG*******************
RSEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMSGPTAKLKSVTGFSSSIFPQG
***IFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMSGPTAKLKSVTGFSSS*F***
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RSEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMSGPTAKLKSVTGFSSSIFPQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query313 2.2.26 [Sep-21-2011]
Q5RBM6384 Beta-ureidopropionase OS= yes N/A 0.702 0.572 0.705 9e-92
Q9UBR1384 Beta-ureidopropionase OS= yes N/A 0.702 0.572 0.705 2e-91
Q8VC97393 Beta-ureidopropionase OS= yes N/A 0.702 0.559 0.692 1e-88
Q03248393 Beta-ureidopropionase OS= yes N/A 0.702 0.559 0.683 2e-88
Q964D8391 Beta-ureidopropionase OS= yes N/A 0.702 0.562 0.656 1e-84
Q8VYF5326 N-carbamoylputrescine ami no N/A 0.575 0.552 0.299 4e-17
Q9XGI9300 N-carbamoylputrescine ami N/A N/A 0.623 0.65 0.277 3e-16
Q3HVN1300 N-carbamoylputrescine ami N/A N/A 0.623 0.65 0.277 4e-16
Q93XI4301 N-carbamoylputrescine ami no N/A 0.674 0.700 0.278 3e-15
Q7TQ94292 Nitrilase homolog 1 OS=Ra no N/A 0.520 0.558 0.287 4e-11
>sp|Q5RBM6|BUP1_PONAB Beta-ureidopropionase OS=Pongo abelii GN=UPB1 PE=2 SV=1 Back     alignment and function desciption
 Score =  337 bits (863), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 156/221 (70%), Positives = 186/221 (84%), Gaps = 1/221 (0%)

Query: 74  FFPQLCIKYNMVIVSPILERD-DVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNEST 132
           F  +L   ++MV+VSPILERD +  D++WNTAVVI+N G V+GK RKNHIPRVGDFNEST
Sbjct: 150 FCQKLAKNHDMVVVSPILERDSEHGDVLWNTAVVISNSGAVLGKTRKNHIPRVGDFNEST 209

Query: 133 YYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWG 192
           YY EGN GHPVF+T+FGRIA+NICYGRHHPLNWLM+ +NGAEI+FNPSATI  LSE LW 
Sbjct: 210 YYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWS 269

Query: 193 IEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPG 252
           IEARNAAIAN  FTCAINRVG+E FPN+FTSGDGK AH  FG+FYGSSY+ AP+G+RTPG
Sbjct: 270 IEARNAAIANHCFTCAINRVGTEHFPNEFTSGDGKKAHQDFGYFYGSSYVAAPDGSRTPG 329

Query: 253 LSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMS 293
           LSR +DGLLVA+LDLNL +QV DVW F+ + R  +Y + ++
Sbjct: 330 LSRSQDGLLVAKLDLNLCQQVNDVWNFKMTGRYEMYARELA 370
Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 6
>sp|Q9UBR1|BUP1_HUMAN Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1 SV=1 Back     alignment and function description
>sp|Q8VC97|BUP1_MOUSE Beta-ureidopropionase OS=Mus musculus GN=Upb1 PE=2 SV=1 Back     alignment and function description
>sp|Q03248|BUP1_RAT Beta-ureidopropionase OS=Rattus norvegicus GN=Upb1 PE=1 SV=1 Back     alignment and function description
>sp|Q964D8|BUP1_DICDI Beta-ureidopropionase OS=Dictyostelium discoideum GN=pyd3 PE=1 SV=1 Back     alignment and function description
>sp|Q8VYF5|AGUB_ARATH N-carbamoylputrescine amidase OS=Arabidopsis thaliana GN=CPA PE=1 SV=1 Back     alignment and function description
>sp|Q9XGI9|AGUB_SOLLC N-carbamoylputrescine amidase OS=Solanum lycopersicum GN=CPA PE=2 SV=1 Back     alignment and function description
>sp|Q3HVN1|AGUB_SOLTU N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1 Back     alignment and function description
>sp|Q93XI4|AGUB_ORYSJ N-carbamoylputrescine amidase OS=Oryza sativa subsp. japonica GN=CPA PE=2 SV=1 Back     alignment and function description
>sp|Q7TQ94|NIT1_RAT Nitrilase homolog 1 OS=Rattus norvegicus GN=Nit1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
193688154368 PREDICTED: beta-ureidopropionase-like [A 0.699 0.595 0.781 1e-101
389609057386 aliphatic nitrilase, putative [Papilio x 0.702 0.569 0.769 1e-100
320164589395 beta-ureidopropionase [Capsaspora owczar 0.702 0.556 0.764 9e-99
357620154263 putative aliphatic nitrilase [Danaus ple 0.702 0.836 0.737 2e-97
91085531383 PREDICTED: similar to aliphatic nitrilas 0.702 0.574 0.755 5e-97
170035237386 aliphatic nitrilase [Culex quinquefascia 0.712 0.577 0.758 9e-97
58392502386 AGAP010229-PA [Anopheles gambiae str. PE 0.702 0.569 0.742 2e-95
321463839390 hypothetical protein DAPPUDRAFT_306977 [ 0.702 0.564 0.742 2e-95
346466411 493 hypothetical protein [Amblyomma maculatu 0.686 0.436 0.726 2e-95
356521231408 PREDICTED: beta-ureidopropionase-like [G 0.702 0.539 0.742 5e-95
>gi|193688154|ref|XP_001948310.1| PREDICTED: beta-ureidopropionase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/220 (78%), Positives = 195/220 (88%), Gaps = 1/220 (0%)

Query: 74  FFPQLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTY 133
           F   +C +YNMVI+SPILERD+  ++IWNTAVVI+N G+V+GKHRKNHIPRVGDFNESTY
Sbjct: 144 FLKDICKQYNMVIISPILERDE-QEVIWNTAVVIDNFGKVIGKHRKNHIPRVGDFNESTY 202

Query: 134 YFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGI 193
           Y EGNTGHPVFET FGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATI GLSE LWGI
Sbjct: 203 YMEGNTGHPVFETAFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATIDGLSETLWGI 262

Query: 194 EARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPGL 253
           EAR AA+AN YF+CAINRVG+E FP++FTSGDGKPAH  FGHFYGSSYITAP+G+RTPGL
Sbjct: 263 EARTAAVANSYFSCAINRVGTEIFPSEFTSGDGKPAHKNFGHFYGSSYITAPDGSRTPGL 322

Query: 254 SRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMS 293
           SR RDGLL++E+DLNL RQVKD WGFQ + R  +Y  S++
Sbjct: 323 SRTRDGLLISEIDLNLCRQVKDHWGFQMTRRLDLYADSLA 362

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|389609057|dbj|BAM18140.1| aliphatic nitrilase, putative [Papilio xuthus] Back     alignment and taxonomy information
>gi|320164589|gb|EFW41488.1| beta-ureidopropionase [Capsaspora owczarzaki ATCC 30864] Back     alignment and taxonomy information
>gi|357620154|gb|EHJ72454.1| putative aliphatic nitrilase [Danaus plexippus] Back     alignment and taxonomy information
>gi|91085531|ref|XP_972280.1| PREDICTED: similar to aliphatic nitrilase [Tribolium castaneum] gi|270009199|gb|EFA05647.1| hypothetical protein TcasGA2_TC015857 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|170035237|ref|XP_001845477.1| aliphatic nitrilase [Culex quinquefasciatus] gi|167877127|gb|EDS40510.1| aliphatic nitrilase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|58392502|ref|XP_319417.2| AGAP010229-PA [Anopheles gambiae str. PEST] gi|55236443|gb|EAA13946.2| AGAP010229-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|321463839|gb|EFX74852.1| hypothetical protein DAPPUDRAFT_306977 [Daphnia pulex] Back     alignment and taxonomy information
>gi|346466411|gb|AEO33050.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|356521231|ref|XP_003529260.1| PREDICTED: beta-ureidopropionase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
UNIPROTKB|A7MBE8384 UPB1 "Uncharacterized protein" 0.702 0.572 0.714 2e-86
UNIPROTKB|F1RL41384 UPB1 "Uncharacterized protein" 0.702 0.572 0.723 2.6e-86
ZFIN|ZDB-GENE-030131-1380384 upb1 "ureidopropionase, beta" 0.699 0.570 0.718 3.3e-86
FB|FBgn0037513386 pyd3 "pyd3" [Drosophila melano 0.738 0.598 0.691 4.3e-86
TAIR|locus:2173348408 BETA-UP "AT5G64370" [Arabidops 0.686 0.526 0.717 6.9e-86
UNIPROTKB|E2QT84384 UPB1 "Uncharacterized protein" 0.702 0.572 0.710 2.4e-85
UNIPROTKB|J9P8R1386 UPB1 "Uncharacterized protein" 0.702 0.569 0.710 2.4e-85
WB|WBGene00017440387 upb-1 [Caenorhabditis elegans 0.702 0.568 0.696 2.4e-85
UNIPROTKB|E7EUZ5316 UPB1 "Beta-ureidopropionase" [ 0.702 0.696 0.705 1.7e-84
UNIPROTKB|Q9UBR1384 UPB1 "Beta-ureidopropionase" [ 0.702 0.572 0.705 1.7e-84
UNIPROTKB|A7MBE8 UPB1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 158/221 (71%), Positives = 185/221 (83%)

Query:    74 FFPQLCIKYNMVIVSPILERD-DVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNEST 132
             F  +L  K+ MV+VSP+LERD D  D++WNTAVV+ + G V+GK RKNHIPRVGDFNEST
Sbjct:   150 FCQELARKHGMVVVSPVLERDSDHGDVLWNTAVVVASSGAVLGKTRKNHIPRVGDFNEST 209

Query:   133 YYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWG 192
             YY EGN GHPVF+T+FGRIA+NICYGRHHPLNWLM+ +NGAEI+FNPSATI  LSE LW 
Sbjct:   210 YYMEGNLGHPVFQTQFGRIAVNICYGRHHPLNWLMYSINGAEIIFNPSATIGALSESLWP 269

Query:   193 IEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPG 252
             IEARNAAIAN  FTCAINRVG E FPN+FTSGDGK AH  FG+FYGSSY+ AP+G+RTPG
Sbjct:   270 IEARNAAIANHCFTCAINRVGREHFPNEFTSGDGKKAHRDFGYFYGSSYVAAPDGSRTPG 329

Query:   253 LSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMS 293
             LSR RDGLLVAELDLNL RQV D+WGF+ + R  +Y + ++
Sbjct:   330 LSRTRDGLLVAELDLNLCRQVNDIWGFKMTGRYEMYARELA 370
GO:0003837 "beta-ureidopropionase activity" evidence=IEA
GO:0006807 "nitrogen compound metabolic process" evidence=IEA
UNIPROTKB|F1RL41 UPB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1380 upb1 "ureidopropionase, beta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0037513 pyd3 "pyd3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2173348 BETA-UP "AT5G64370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2QT84 UPB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P8R1 UPB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
WB|WBGene00017440 upb-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E7EUZ5 UPB1 "Beta-ureidopropionase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBR1 UPB1 "Beta-ureidopropionase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VC97BUP1_MOUSE3, ., 5, ., 1, ., 60.69230.70280.5597yesN/A
Q5RBM6BUP1_PONAB3, ., 5, ., 1, ., 60.70580.70280.5729yesN/A
Q964D8BUP1_DICDI3, ., 5, ., 1, ., 60.65610.70280.5626yesN/A
Q9UBR1BUP1_HUMAN3, ., 5, ., 1, ., 60.70580.70280.5729yesN/A
Q03248BUP1_RAT3, ., 5, ., 1, ., 60.68320.70280.5597yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.6LOW CONFIDENCE prediction!
3rd Layer3.5.10.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
cd07587363 cd07587, ML_beta-AS, mammalian-like beta-alanine s 1e-163
PLN00202405 PLN00202, PLN00202, beta-ureidopropionase 1e-139
cd07568287 cd07568, ML_beta-AS_like, mammalian-like beta-alan 1e-100
cd07197253 cd07197, nitrilase, Nitrilase superfamily, includi 3e-46
cd07573284 cd07573, CPA, N-carbamoylputrescine amidohydrolase 7e-38
pfam00795172 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase 5e-34
cd07587363 cd07587, ML_beta-AS, mammalian-like beta-alanine s 6e-31
COG0388274 COG0388, COG0388, Predicted amidohydrolase [Genera 6e-31
cd07584258 cd07584, nitrilase_6, Uncharacterized subgroup of 1e-29
TIGR03381279 TIGR03381, agmatine_aguB, N-carbamoylputrescine am 7e-27
PLN00202405 PLN00202, PLN00202, beta-ureidopropionase 3e-25
PLN02747296 PLN02747, PLN02747, N-carbamolyputrescine amidase 9e-25
cd07580268 cd07580, nitrilase_2, Uncharacterized subgroup of 2e-22
cd07583253 cd07583, nitrilase_5, Uncharacterized subgroup of 7e-22
cd07577259 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 7e-21
cd07578258 cd07578, nitrilase_1_R1, First nitrilase domain of 2e-17
cd07572265 cd07572, nit, Nit1, Nit 2, and related proteins, a 8e-17
cd07586269 cd07586, nitrilase_8, Uncharacterized subgroup of 4e-16
cd07576254 cd07576, R-amidase_like, Pseudomonas sp 1e-14
cd07585261 cd07585, nitrilase_7, Uncharacterized subgroup of 1e-14
cd07569302 cd07569, DCase, N-carbamyl-D-amino acid amidohydro 2e-13
cd07564297 cd07564, nitrilases_CHs, Nitrilases, cyanide hydra 4e-12
cd07581255 cd07581, nitrilase_3, Uncharacterized subgroup of 7e-11
cd07574280 cd07574, nitrilase_Rim1_like, Uncharacterized subg 8e-11
cd07568287 cd07568, ML_beta-AS_like, mammalian-like beta-alan 4e-10
cd07565291 cd07565, aliphatic_amidase, aliphatic amidases (cl 1e-09
cd07582294 cd07582, nitrilase_4, Uncharacterized subgroup of 1e-09
PLN02504346 PLN02504, PLN02504, nitrilase 8e-08
cd07570261 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe 2e-07
PLN02798286 PLN02798, PLN02798, nitrilase 2e-06
PRK13287333 PRK13287, amiF, formamidase; Provisional 4e-06
PRK13981 540 PRK13981, PRK13981, NAD synthetase; Provisional 6e-05
cd07573284 cd07573, CPA, N-carbamoylputrescine amidohydrolase 1e-04
>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information 
 Score =  457 bits (1178), Expect = e-163
 Identities = 169/220 (76%), Positives = 188/220 (85%), Gaps = 1/220 (0%)

Query: 74  FFPQLCIKYNMVIVSPILERDDVT-DIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNEST 132
           F  +L  KYNMVIVSPILERD+   D IWNTAVVI+N G V+GK RKNHIPRVGDFNEST
Sbjct: 142 FCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNEST 201

Query: 133 YYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWG 192
           YY EGNTGHPVFET+FG+IA+NICYGRHHPLNWLM+GLNGAEIVFNPSAT+  LSEP+W 
Sbjct: 202 YYMEGNTGHPVFETQFGKIAVNICYGRHHPLNWLMYGLNGAEIVFNPSATVGALSEPMWP 261

Query: 193 IEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPG 252
           IEARNAAIAN YFT  INRVG+E FPN+FTSGDGKPAH  FGHFYGSSY+ AP+G+RTPG
Sbjct: 262 IEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHKDFGHFYGSSYVAAPDGSRTPG 321

Query: 253 LSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSM 292
           LSR RDGLLVAELDLNL RQVKD WGF+ + R  +Y   +
Sbjct: 322 LSRTRDGLLVAELDLNLCRQVKDKWGFRMTARYEMYADFL 361

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 363
>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase Back     alignment and domain information
>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase Back     alignment and domain information
>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase Back     alignment and domain information
>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase Back     alignment and domain information
>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase Back     alignment and domain information
>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143602 cd07578, nitrilase_1_R1, First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp Back     alignment and domain information
>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>gnl|CDD|143589 cd07565, aliphatic_amidase, aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>gnl|CDD|143606 cd07582, nitrilase_4, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>gnl|CDD|178120 PLN02504, PLN02504, nitrilase Back     alignment and domain information
>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>gnl|CDD|215428 PLN02798, PLN02798, nitrilase Back     alignment and domain information
>gnl|CDD|183950 PRK13287, amiF, formamidase; Provisional Back     alignment and domain information
>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional Back     alignment and domain information
>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 313
cd07587363 ML_beta-AS mammalian-like beta-alanine synthase (b 100.0
PLN00202405 beta-ureidopropionase 100.0
TIGR03381279 agmatine_aguB N-carbamoylputrescine amidase. Membe 100.0
cd07568287 ML_beta-AS_like mammalian-like beta-alanine syntha 100.0
PLN02747296 N-carbamolyputrescine amidase 100.0
PRK10438256 C-N hydrolase family amidase; Provisional 100.0
cd07564297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 100.0
cd07580268 nitrilase_2 Uncharacterized subgroup of the nitril 100.0
cd07579279 nitrilase_1_R2 Second nitrilase domain of an uncha 100.0
PLN02504346 nitrilase 100.0
cd07573284 CPA N-carbamoylputrescine amidohydrolase (CPA) (cl 100.0
KOG0807|consensus295 100.0
cd07569302 DCase N-carbamyl-D-amino acid amidohydrolase (DCas 100.0
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 100.0
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 100.0
cd07583253 nitrilase_5 Uncharacterized subgroup of the nitril 100.0
cd07584258 nitrilase_6 Uncharacterized subgroup of the nitril 100.0
PLN02798286 nitrilase 100.0
cd07585261 nitrilase_7 Uncharacterized subgroup of the nitril 100.0
cd07567299 biotinidase_like biotinidase and vanins (class 4 n 100.0
cd07572265 nit Nit1, Nit 2, and related proteins, and the Nit 100.0
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 100.0
cd07586269 nitrilase_8 Uncharacterized subgroup of the nitril 100.0
cd07577259 Ph0642_like Pyrococcus horikoshii Ph0642 and relat 100.0
cd07578258 nitrilase_1_R1 First nitrilase domain of an unchar 100.0
cd07582294 nitrilase_4 Uncharacterized subgroup of the nitril 100.0
cd07575252 Xc-1258_like Xanthomonas campestris XC1258 and rel 100.0
COG0388274 Predicted amidohydrolase [General function predict 100.0
PRK13286345 amiE acylamide amidohydrolase; Provisional 100.0
cd07570261 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, 100.0
cd07574280 nitrilase_Rim1_like Uncharacterized subgroup of th 100.0
PRK13287333 amiF formamidase; Provisional 100.0
cd07197253 nitrilase Nitrilase superfamily, including nitrile 100.0
cd07571270 ALP_N-acyl_transferase Apolipoprotein N-acyl trans 100.0
KOG0808|consensus387 100.0
PRK13981 540 NAD synthetase; Provisional 100.0
KOG0806|consensus298 100.0
PRK02628 679 nadE NAD synthetase; Reviewed 100.0
KOG0805|consensus337 100.0
cd07566295 ScNTA1_like Saccharomyces cerevisiae N-terminal am 100.0
PLN02339 700 NAD+ synthase (glutamine-hydrolysing) 100.0
PRK00302505 lnt apolipoprotein N-acyltransferase; Reviewed 100.0
TIGR00546391 lnt apolipoprotein N-acyltransferase. This enzyme 100.0
PF00795186 CN_hydrolase: Carbon-nitrogen hydrolase The Prosit 99.97
PRK12291418 apolipoprotein N-acyltransferase; Reviewed 99.95
COG0815518 Lnt Apolipoprotein N-acyltransferase [Cell envelop 99.94
PRK13825388 conjugal transfer protein TraB; Provisional 99.91
KOG2303|consensus 706 99.61
cd07576254 R-amidase_like Pseudomonas sp. MCI3434 R-amidase a 83.27
cd07581255 nitrilase_3 Uncharacterized subgroup of the nitril 83.2
cd07565291 aliphatic_amidase aliphatic amidases (class 2 nitr 82.7
cd07568 287 ML_beta-AS_like mammalian-like beta-alanine syntha 82.28
TIGR03381 279 agmatine_aguB N-carbamoylputrescine amidase. Membe 81.48
PLN02747 296 N-carbamolyputrescine amidase 81.34
PF00795186 CN_hydrolase: Carbon-nitrogen hydrolase The Prosit 80.83
cd07564 297 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s 80.41
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information 
Probab=100.00  E-value=7e-55  Score=406.39  Aligned_cols=270  Identities=66%  Similarity=1.085  Sum_probs=231.1

Q ss_pred             cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCC-----ccccccccccCccccCCCCCcccccCCCccchHHHHHH
Q psy12521          2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKP-----AHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFP   76 (313)
Q Consensus         2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   76 (313)
                      .|++++.++|++|+++||||||   |||++++||...     ++.++++       ...+++.+            +.|+
T Consensus        87 ~nl~ki~~~i~~Aa~~gadLiv---fPE~~l~g~~~~~~~~~~~~~~ae-------~~~~g~~~------------~~l~  144 (363)
T cd07587          87 AIHDRIKKIIEAAAMAGVNIIC---FQEAWTMPFAFCTREKLPWCEFAE-------SAEDGPTT------------KFCQ  144 (363)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEE---ccccccCCccccccccchHHHHhh-------ccCCChHH------------HHHH
Confidence            4789999999999999999999   999999987321     1223343       22357788            9999


Q ss_pred             HHHHHcCcEEEeeceeecCC-CCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEe
Q psy12521         77 QLCIKYNMVIVSPILERDDV-TDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINI  155 (313)
Q Consensus        77 ~lA~~~~i~iv~G~~~~~~~-~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~I  155 (313)
                      ++|++++++|++|+.++++. .+++|||+++|+|+|+++++|||+||++.+.+.|+.+|.+|+..+.+|+++++|||++|
T Consensus       145 ~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~griG~~I  224 (363)
T cd07587         145 ELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGKIAVNI  224 (363)
T ss_pred             HHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCceEEEEE
Confidence            99999999999999887642 26899999999999999999999999987778899999999855789999999999999


Q ss_pred             ecCCccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCccee
Q psy12521        156 CYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGH  235 (313)
Q Consensus       156 C~D~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~  235 (313)
                      |||++|||++|.++++|||||++|++|+......+|..++++||+||++||++||++|.+..++.+++++|.+.+.+...
T Consensus       225 CyD~~fPe~~r~la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~~~~~  304 (363)
T cd07587         225 CYGRHHPLNWLMYGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHKDFGH  304 (363)
T ss_pred             ecccCCcHHHHHHHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccccccc
Confidence            99999999999999999999999999986545579999999999999999999999998754444444444332223246


Q ss_pred             eeeeeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhhhhhc
Q psy12521        236 FYGSSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMS  293 (313)
Q Consensus       236 ~~G~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~~~~~  293 (313)
                      |+|+|+|++|+|++++++...+|++++++||++.+++.|..++++.++|+++|..++.
T Consensus       305 f~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~~r~~~y~~~~~  362 (363)
T cd07587         305 FYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMTARYEMYADFLA  362 (363)
T ss_pred             ccceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCccCCHHHHHHHhc
Confidence            8899999999999999887678999999999999999999999999999999987654

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
>PLN00202 beta-ureidopropionase Back     alignment and domain information
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>PRK10438 C-N hydrolase family amidase; Provisional Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PLN02504 nitrilase Back     alignment and domain information
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases) Back     alignment and domain information
>KOG0807|consensus Back     alignment and domain information
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases) Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>PLN02798 nitrilase Back     alignment and domain information
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases) Back     alignment and domain information
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases) Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>COG0388 Predicted amidohydrolase [General function prediction only] Back     alignment and domain information
>PRK13286 amiE acylamide amidohydrolase; Provisional Back     alignment and domain information
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases) Back     alignment and domain information
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases) Back     alignment and domain information
>PRK13287 amiF formamidase; Provisional Back     alignment and domain information
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes Back     alignment and domain information
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases) Back     alignment and domain information
>KOG0808|consensus Back     alignment and domain information
>PRK13981 NAD synthetase; Provisional Back     alignment and domain information
>KOG0806|consensus Back     alignment and domain information
>PRK02628 nadE NAD synthetase; Reviewed Back     alignment and domain information
>KOG0805|consensus Back     alignment and domain information
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases) Back     alignment and domain information
>PLN02339 NAD+ synthase (glutamine-hydrolysing) Back     alignment and domain information
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>TIGR00546 lnt apolipoprotein N-acyltransferase Back     alignment and domain information
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [] Back     alignment and domain information
>PRK12291 apolipoprotein N-acyltransferase; Reviewed Back     alignment and domain information
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK13825 conjugal transfer protein TraB; Provisional Back     alignment and domain information
>KOG2303|consensus Back     alignment and domain information
>cd07576 R-amidase_like Pseudomonas sp Back     alignment and domain information
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases) Back     alignment and domain information
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases) Back     alignment and domain information
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases) Back     alignment and domain information
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase Back     alignment and domain information
>PLN02747 N-carbamolyputrescine amidase Back     alignment and domain information
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production [] Back     alignment and domain information
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
2vhh_A405 Crystal Structure Of A Pyrimidine Degrading Enzyme 5e-94
2ggk_A304 The Mutant A302c Of Agrobacterium Radiobacter N-Car 1e-12
1fo6_A304 Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A 2e-12
2ggl_A304 The Mutant A222c Of Agrobacterium Radiobacter N-Car 2e-12
1erz_A303 Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh 1e-11
1f89_A291 Crystal Structure Of Saccharomyces Cerevisiae Nit3, 1e-11
1j31_A262 Crystal Structure Of Hypothetical Protein Ph0642 Fr 6e-11
3ivz_A262 Crystal Structure Of Hyperthermophilic Nitrilase Le 2e-10
1uf4_A303 Crystal Structure Of C171aV236A MUTANT OF N-Carbamy 5e-10
1ems_A 440 Crystal Structure Of The C. Elegans Nitfhit Protein 4e-08
2dyu_A334 Helicobacter Pylori Formamidase Amif Contains A Fin 4e-04
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405 Back     alignment and structure 
Iteration: 1

 Score =  340 bits (873), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 164/240 (68%), Positives = 187/240 (77%), Gaps = 6/240 (2%)
Query: 74  FFPQLCIKYNMVIVSPILERD-DVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNEST 132
              +L   YNMVI+  ILERD +  + IWNTAVVI+N GR +GKHRKNHIPRVGDFNEST
Sbjct: 151 MLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNEST 210
Query: 133 YYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWG 192
           YY EGNTGHPVFETEFG++A+NICYGRHHP NW+MFGLNGAEIVFNPSATI  LSEPLW 
Sbjct: 211 YYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWS 270
Query: 193 IEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPG 252
           IEARNAAIAN YFT  INRVG+E FPN++TSGDG  AH +FG FYGSSY+ AP+G+RTP 
Sbjct: 271 IEARNAAIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPS 330
Query: 253 LSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYIQSMSGPTAKLKSVTGFSSSIFPQ 312
           LSR +DGLLV ELDLNL RQVKD WGF+ + R  +Y +S      K  S  GF   I  +
Sbjct: 331 LSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVPLYAESF-----KKASEHGFKPQIIKE 385
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304 Back     alignment and structure
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303 Back     alignment and structure
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A Member Of Branch 10 Of The Nitrilase Superfamily Length = 291 Back     alignment and structure
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262 Back     alignment and structure
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262 Back     alignment and structure
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D- Amino Acid Amidohydrolase Length = 303 Back     alignment and structure
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein Length = 440 Back     alignment and structure
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned Cysteine- Glutamate-lysine Catalytic Triad Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 5e-91
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 6e-15
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 5e-64
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1e-06
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 1e-49
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 2e-04
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 3e-48
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 7e-05
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 2e-42
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 3e-37
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 5e-22
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 4e-19
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 5e-19
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 5e-18
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 1e-16
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 4e-07
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 4e-06
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 3e-05
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 5e-05
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405 Back     alignment and structure
 Score =  275 bits (706), Expect = 5e-91
 Identities = 156/207 (75%), Positives = 173/207 (83%), Gaps = 1/207 (0%)

Query: 74  FFPQLCIKYNMVIVSPILERDDV-TDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNEST 132
              +L   YNMVI+  ILERD    + IWNTAVVI+N GR +GKHRKNHIPRVGDFNEST
Sbjct: 151 MLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNEST 210

Query: 133 YYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWG 192
           YY EGNTGHPVFETEFG++A+NICYGRHHP NW+MFGLNGAEIVFNPSATI  LSEPLW 
Sbjct: 211 YYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWS 270

Query: 193 IEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGTRTPG 252
           IEARNAAIAN YFT  INRVG+E FPN++TSGDG  AH +FG FYGSSY+ AP+G+RTP 
Sbjct: 271 IEARNAAIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPS 330

Query: 253 LSRVRDGLLVAELDLNLNRQVKDVWGF 279
           LSR +DGLLV ELDLNL RQVKD WGF
Sbjct: 331 LSRDKDGLLVVELDLNLCRQVKDFWGF 357
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405 Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303 Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334 Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262 Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262 Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283 Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341 Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281 Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266 Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291 Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440 Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634 Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565 Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 100.0
2vhh_A405 CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste 100.0
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 100.0
3ivz_A262 Nitrilase; alpha-beta sandwich, hydrolase; 1.57A { 100.0
2w1v_A276 Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A 100.0
1f89_A291 32.5 kDa protein YLR351C; nitrilase, dimer, struct 100.0
2e11_A266 Hydrolase; dimethylarsenic inhibi complex, cacodyl 100.0
1uf5_A303 N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 100.0
1ems_A 440 Nitfhit, NIT-fragIle histidine triad fusion protei 100.0
2dyu_A334 Formamidase; AMIF, CEK, catalytic triad, helicobac 100.0
2uxy_A341 Aliphatic amidase; nitrilase superfamily, hydrolas 100.0
3n05_A 590 NH(3)-dependent NAD(+) synthetase; ligase, structu 100.0
3ilv_A 634 Glutamine-dependent NAD(+) synthetase; protein str 100.0
4f4h_A 565 Glutamine dependent NAD+ synthetase; structural ge 100.0
3sdb_A 680 Glutamine-dependent NAD(+) synthetase; glutamine-a 100.0
3p8k_A281 Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A 87.13
3hkx_A283 Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp 83.65
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
Probab=100.00  E-value=1.4e-52  Score=379.06  Aligned_cols=242  Identities=21%  Similarity=0.274  Sum_probs=216.9

Q ss_pred             cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521          2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK   81 (313)
Q Consensus         2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~   81 (313)
                      .|++++++++++|+++||||||   |||++++||...++.+.++       . .+++.+            +.|+++|++
T Consensus        37 ~Nl~~~~~~i~~A~~~gadlvv---fPE~~l~gy~~~~~~~~a~-------~-~~~~~~------------~~l~~la~~   93 (281)
T 3p8k_A           37 KNETQITQWFEKNMNAEVDVVV---LPEMWNNGYDLEHLNEKAD-------N-NLGQSF------------SFIKHLAEK   93 (281)
T ss_dssp             HHHHHHHHHHHHHCCTTCCEEE---CCSSTTTTTCGGGHHHHSE-------E-TTHHHH------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcEEE---cCCCccCCCChhHHHHhhh-------c-cCcHHH------------HHHHHHHhh
Confidence            5899999999999999999999   9999999995433333443       2 235666            999999999


Q ss_pred             cCcEEEeece-eecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCC-CeEEe-CCceEEEEeecC
Q psy12521         82 YNMVIVSPIL-ERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGH-PVFET-EFGRIAINICYG  158 (313)
Q Consensus        82 ~~i~iv~G~~-~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~-~v~~~-~~~rig~~IC~D  158 (313)
                      ++++|++|.. ++.+  +++||++++|+|+|+++++|+|+||+++  |.|..+|++|+. + .+|++ +++|+|++||||
T Consensus        94 ~~i~iv~G~~~~~~~--~~~yNs~~~i~~~G~i~~~y~K~hL~~~--f~E~~~f~~G~~-~~~v~~~~~~~~ig~~IC~D  168 (281)
T 3p8k_A           94 YKVDIVAGSVSNIRN--NQIFNTAFSVNKSGQLINEYDKVHLVPM--LREHEFLTAGEY-VAEPFQLSDGTYVTQLICYD  168 (281)
T ss_dssp             HTCEEEEEEEEEEET--TEEEEEEEEECTTSCEEEEEECSCCCTT--TTGGGTCCCCSS-CCCCEECTTCCEEEEEEGGG
T ss_pred             CCeEEEEeeeEEccC--CcEEEEEEEEcCCCeEEEEEeeEECCCC--cCccccCcCCCC-CceeEEeCCCcEEEEEEecC
Confidence            9999999975 5555  8999999999999999999999999873  589999999996 6 99999 999999999999


Q ss_pred             CccchHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeee
Q psy12521        159 RHHPLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYG  238 (313)
Q Consensus       159 ~~~pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G  238 (313)
                      ++|||++|.++.+|||+|++|++|+.. ...+|+.++++||+||++||++||++|.++         +       ..|.|
T Consensus       169 ~~fpe~~r~~~~~Gadli~~psa~~~~-~~~~~~~~~~arA~en~~~vv~~n~~G~~~---------~-------~~~~G  231 (281)
T 3p8k_A          169 LRFPELLRYPARSGAKIAFYVAQWPMS-RLQHWHSLLKARAIENNMFVIGTNSTGFDG---------N-------TEYAG  231 (281)
T ss_dssp             GGCTHHHHHHHHTTCCEEEEEECCBGG-GHHHHHHHHHHHHHHHTSEEEEEECEEECS---------S-------CEEEC
T ss_pred             CCCcHHHHHHHHCCCCEEEECCCCCCc-cHHHHHHHHHHHHHHcCCEEEEEccCcCCC---------C-------cEEee
Confidence            999999999999999999999999875 367899999999999999999999999764         2       57999


Q ss_pred             eeEEECCCCceeccCCCCCccEEEEEeehhhHHHHHHhcCcccccchhhhh
Q psy12521        239 SSYITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVKDVWGFQASIRELVYI  289 (313)
Q Consensus       239 ~S~iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r~~~~~~~~~r~~~y~  289 (313)
                      .|+|+||+|+++++ ..+++++++++||++.+++.|..+|++++||||+|+
T Consensus       232 ~S~ii~p~G~vl~~-~~~~e~~l~~~id~~~~~~~R~~~p~~~~rr~~lY~  281 (281)
T 3p8k_A          232 HSIVINPNGDLVGE-LNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK  281 (281)
T ss_dssp             CCEEECTTSCEEEE-CCSSCEEEEEEEETHHHHHHHHHSCGGGTCCTTTCC
T ss_pred             eEEEECCCCCEEEe-cCCCCeEEEEEEcHHHHHHHHHhCcchhhcChhhcC
Confidence            99999999999999 668999999999999999999999999999999994
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Back     alignment and structure
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Back     alignment and structure
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Back     alignment and structure
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Back     alignment and structure
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Back     alignment and structure
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Back     alignment and structure
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Back     alignment and structure
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Back     alignment and structure
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Back     alignment and structure
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Back     alignment and structure
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 313
d1uf5a_303 d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol 1e-21
d1j31a_262 d.160.1.2 (A:) Hypothetical protein PH0642 {Archae 2e-18
d1emsa2271 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te 1e-14
d1f89a_281 d.160.1.1 (A:) hypothetical protein yl85 {Baker's 2e-07
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score = 90.5 bits (223), Expect = 1e-21
 Identities = 43/210 (20%), Positives = 87/210 (41%), Gaps = 17/210 (8%)

Query: 77  QLCIKYNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNE------ 130
           +L I +N+     ++E        +NT+++++  G+++GK+RK H+P   ++        
Sbjct: 86  ELGIGFNLGYAELVVEGGV--KRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQH 143

Query: 131 --STYYFEGNTGHPVFETEFGRIAINICYGRHHPLNWLMFGLNGAEIVFNPSATITGLSE 188
               Y+  G+ G PV++ +  ++ + I   R  P  W + GL GAEI+     T T    
Sbjct: 144 LEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPP 203

Query: 189 PLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSYITAPNGT 248
                   +          +            +++  GK    +     G S I AP G 
Sbjct: 204 VPQHDHLTSFHHLLSMQAGSY-------QNGAWSAAAGKAGMEENCMLLGHSCIVAPTGE 256

Query: 249 RTPGLSRVRDGLLVAELDLNLNRQVKDVWG 278
                + + D ++ A +DL+  R++++   
Sbjct: 257 IVALTTTLEDEVITAAVDLDRCRELREHIF 286
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262 Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271 Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
d1j31a_262 Hypothetical protein PH0642 {Archaeon Pyrococcus h 100.0
d1uf5a_303 N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter 100.0
d1f89a_281 hypothetical protein yl85 {Baker's yeast (Saccharo 100.0
d1emsa2271 NIT-FHIT fusion protein, N-terminal domain {Nemato 100.0
>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=9.4e-50  Score=354.81  Aligned_cols=242  Identities=26%  Similarity=0.401  Sum_probs=211.2

Q ss_pred             cccccHHHHHHhHHhcCCcEEEccCCCCcccCCCCCCccccccccccCccccCCCCCcccccCCCccchHHHHHHHHHHH
Q psy12521          2 SEIFHSPAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTEFGHFYGSSYITAPNGTRTPVSRNSSIVTFDYFFPQLCIK   81 (313)
Q Consensus         2 ~~l~~~~~~i~~A~~~gadlvv~~~fPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~   81 (313)
                      +|+++++++|++|+++||||||   |||++++||.........+..    ....+++.+            +.++++|++
T Consensus        18 ~nl~~i~~~i~~A~~~gadlvv---fPE~~l~gy~~~~~~~~~~~~----~~~~~~~~~------------~~~~~~A~~   78 (262)
T d1j31a_          18 KNYSKAEKLIKEASKEGAKLVV---LPELFDTGYNFESREEVFDVA----QQIPEGETT------------TFLMELARE   78 (262)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEE---CCTTTTTCSCCSSHHHHHTTC----BCTTTSHHH------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEE---cCCccccCCchhhhhHhhhhh----hhcccCHHH------------HHHHHhhhc
Confidence            5899999999999999999999   999999998443322122100    022234556            999999999


Q ss_pred             cCcEEEeeceeecCCCCeEEEEEEEEcCCCcEeeeEeecCCCCCCCCCcccceeCCCCCCCeEEeCCceEEEEeecCCcc
Q psy12521         82 YNMVIVSPILERDDVTDIIWNTAVVINNHGRVMGKHRKNHIPRVGDFNESTYYFEGNTGHPVFETEFGRIAINICYGRHH  161 (313)
Q Consensus        82 ~~i~iv~G~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~~~E~~~~~~G~~~~~v~~~~~~rig~~IC~D~~~  161 (313)
                      ++++|++|+.++++  +++||+++++++ |+++..|+|+||++    .|..+|.+|+..+.+|+++++|||++||||.+|
T Consensus        79 ~~i~i~~g~~~~~~--~~~~n~~~~i~~-g~~~~~y~K~~l~~----~e~~~~~~G~~~~~v~~~~~~~ig~~IC~D~~~  151 (262)
T d1j31a_          79 LGLYIVAGTAEKSG--NYLYNSAVVVGP-RGYIGKYRKIHLFY----REKVFFEPGDLGFKVFDIGFAKVGVMICFDWFF  151 (262)
T ss_dssp             HTCEEEEEEEEEET--TEEEEEEEEEET-TEEEEEEECSSCCT----THHHHCCCCCSCSCEEECSSCEEEECCGGGGGS
T ss_pred             cCceEEeeeeeccc--ccccccceEEEe-eeEEEEEeeeecCc----cCceeECCCCCCceEEEeCCceEEEEEehhhhh
Confidence            99999999999887  899999999996 78999999999986    788999999876889999999999999999999


Q ss_pred             chHHHHHHhCCCcEEEEeCCCCCCCChhhHHHHHHHHHHhhCcEEEEEccccCCCCCCCCcCCCCCCCCCcceeeeeeeE
Q psy12521        162 PLNWLMFGLNGAEIVFNPSATITGLSEPLWGIEARNAAIANGYFTCAINRVGSETFPNQFTSGDGKPAHTQFGHFYGSSY  241 (313)
Q Consensus       162 pe~~r~~~~~Gadlil~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~g~~~~~~~~~~~G~S~  241 (313)
                      ||+++.++++|||++++|+++..    ..|...+++||+||++||++||++|.++         +       ..|.|+|+
T Consensus       152 pe~~~~~~~~ga~lil~p~~~~~----~~~~~~~~~rA~en~~~vv~~n~~G~~~---------~-------~~~~G~S~  211 (262)
T d1j31a_         152 PESARTLALKGAEIIAHPANLVM----PYAPRAMPIRALENRVYTITADRVGEER---------G-------LKFIGKSL  211 (262)
T ss_dssp             HHHHHHHHHTTCSEEEEECCCCS----SCHHHHHHHHHHHHTCEEEEECCCSEET---------T-------EECCCCCE
T ss_pred             hHHHHHHHHhccccccCCccccc----ccchhhhhhhhhcccceEEEEecccccC---------C-------ccccCCCE
Confidence            99999999999999999999865    3577788999999999999999999864         2       57899999


Q ss_pred             EECCCCceeccCCCCCccEEEEEeehhhHHHHH--HhcCcccccchhhhh
Q psy12521        242 ITAPNGTRTPGLSRVRDGLLVAELDLNLNRQVK--DVWGFQASIRELVYI  289 (313)
Q Consensus       242 iv~p~G~vla~~~~~~e~vl~a~id~~~~~~~r--~~~~~~~~~r~~~y~  289 (313)
                      |++|+|+++++++.++++++++++|++.++..|  ..+++++|||||+|.
T Consensus       212 i~~p~G~~l~~~~~~~e~i~~a~iDl~~~~~~r~~~~~~~~~~rr~d~y~  261 (262)
T d1j31a_         212 IASPKAEVLSIASETEEEIGVVEIDLNLARNKRLNDMNDIFKDRREEYYF  261 (262)
T ss_dssp             EECTTSCEEEECCSSCCEEEEEEECHHHHHCCEEETTEETTTTCCGGGSC
T ss_pred             EEeCCCCEEEEcCCCCCEEEEEEEEcHHHHHHHHhccCCchhhCCccccC
Confidence            999999999999888999999999999998766  468999999999995
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Back     information, alignment and structure
>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure