Psyllid ID: psy12567

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MSRFLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRGNFNCYERSTLFR
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHcccccccEEEcccccccccccccccccEcccccccHHccccccccccccccccccccccccccccEEEcccccccccEccccccccccccccHHHHccccccccccccccccccccccccccccEccc
Coil and Loop (DISEMBL)
msrflfaslpvedieyftegrecvncgaistplwrrdgtghylcnarlfstsftGYFIMSRFlfaslpvedieyftegrecvncgaistplwrrdgtghylcnacglyhkmngmnrplvkqprrlrfdrgnfncyerstlfr
Flexible Loop (DISEMBL)
msrflfaslpvEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTEGRECVNCGAistplwrrdgTGHYLCNACGLYHKMNGMNRPLVkqprrlrfdrgnfncyerstlfr
Low Complexity Region (SEG)
MSRFLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRGNFNCYERSTLFR
Disordered region (IsUnstruct)
***FLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRGNFNCYE******
Disordered Region (DISOPRED)
*************************CGAISTPLWRRDGTGHYLCNARLFSTSFT**********************EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGM****************************
Disordered Region (DISEMBL)
MSRFLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRGNFNCYERSTLFR
Disordered Region (DISPRO)
***********E****FTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTG*****RF***************GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQ*********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSRFLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRGNFNCYERSTLFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
P52168	540	GATA-binding factor A OS=	no	N/A	0.683	0.179	0.556	2e-26
P43694	442	Transcription factor GATA	yes	N/A	0.302	0.097	0.836	1e-24
Q0Q0E4	442	Transcription factor GATA	yes	N/A	0.302	0.097	0.836	1e-24
P46152	440	Transcription factor GATA	yes	N/A	0.302	0.097	0.836	1e-24
Q08369	440	Transcription factor GATA	yes	N/A	0.302	0.097	0.836	2e-24
P52167	508	Transcription factor BCFI	N/A	N/A	0.732	0.204	0.532	2e-24
Q91677	392	Transcription factor GATA	N/A	N/A	0.345	0.125	0.770	2e-24
P91623	486	GATA-binding factor C OS=	no	N/A	0.683	0.199	0.504	1e-23
P43691	380	Transcription factor GATA	yes	N/A	0.521	0.194	0.662	1e-23
P23773	435	GATA-binding factor 3 OS=	N/A	N/A	0.676	0.220	0.529	1e-23

>sp|P52168|PNR_DROME GATA-binding factor A OS=Drosophila melanogaster GN=pnr PE=1 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 69/106 (65%), Gaps = 9/106 (8%)

Query: 17  FTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFT 76
           F EGRECVNCGAISTPLWRRDGTGHYLCNA        G   M+R L    P + +   T
Sbjct: 163 FGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNG---MNRPLIK--PSKRLVSAT 217

Query: 77  EGRE----CVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
             R     C NCG  +T LWRR+  G  +CNACGLY+K++G+NRPL
Sbjct: 218 ATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPL 263

Transcriptional regulator involved in several developmental processes during embryonic and imaginal disks development. Involved in determining dorsal cell fate. Acts as an essential transcriptional regulator of proneural achaete-scute complex (AS-C) and is required for its spatial regulation during development of the adult peripheral nervous system, and hence for the positioning of neural precursors. It is the only factor to directly activate AS-C genes.
Drosophila melanogaster (taxid: 7227)

>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens GN=GATA4 PE=1 SV=2

 Score =  112 bits (279), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 50/55 (90%)

Query: 75  FTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           F+EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNG+NRPL+K  RRL   R
Sbjct: 211 FSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSASR 265

Transcriptional activator. Binds to the consensus sequence 5'-AGATAG-3'. Acts as a transcriptional activator of ANF in cooperation with NKX2-5 (By similarity). Promotes cardiac myocyte enlargement.

Homo sapiens (taxid: 9606)

>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis familiaris GN=GATA4 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 50/55 (90%)

Query: 75  FTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           F+EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNG+NRPL+K  RRL   R
Sbjct: 211 FSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSASR 265

Transcriptional activator. Binds to the consensus sequence 5'-AGATAG-3'. Acts as a transcriptional activator of ANF in cooperation with NKX2-5. Promotes cardiac myocyte enlargement.

Canis familiaris (taxid: 9615)

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus GN=Gata4 PE=1 SV=1

 Score =  111 bits (277), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 50/55 (90%)

Query: 75  FTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           F+EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNG+NRPL+K  RRL   R
Sbjct: 210 FSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSASR 264

Transcriptional activator. Binds to the upstream sequence of the H(+)/K(+)-ATPase beta gene and to a sequence containing the GATA motif. Acts as a transcriptional activator of ANF in cooperation with NKX2-5. Promotes cardiac myocyte enlargement.

Rattus norvegicus (taxid: 10116)

>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus GN=Gata4 PE=1 SV=3

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 50/55 (90%)

Query: 75  FTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           F+EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNG+NRPL+K  RRL   R
Sbjct: 210 FSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSASR 264

Transcriptional activator. Binds to the consensus sequence 5'-AGATAG-3'. Regulates the expression of the HSP47/J6 gene in F9 cells. Acts as a transcriptional activator of ANF in cooperation with NKX2-5. Promotes cardiac myocyte enlargement.

Mus musculus (taxid: 10090)

>sp|P52167|GATAB_BOMMO Transcription factor BCFI OS=Bombyx mori GN=GATA-B PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 67/109 (61%), Gaps = 5/109 (4%)

Query: 11  VEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVE 70
           VE  E+FTEGRECVNCGAI TPLW RDGTGHYLCNA        G   M+R L    P  
Sbjct: 257 VELAEFFTEGRECVNCGAIHTPLWHRDGTGHYLCNACGLYNKMNG---MNRPL--KQPRR 311

Query: 71  DIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
            +     G  C NC   +T LWRR+  G  +CNACGLY K++ +NRPL 
Sbjct: 312 LMAAKRPGTMCTNCQTTATSLWRRNVQGETVCNACGLYFKLHNVNRPLT 360

Regulates the expression of chorion genes through binding to gene promoter elements identical to those recognized by the GATA family of transcription factors. Isoform 1 may act as a gonad-specific trans-activator while isoform 2 and isoform 3 may serve as ubiquitous transcriptional modulators.

Bombyx mori (taxid: 7091)

>sp|Q91677|GATA4_XENLA Transcription factor GATA-4 OS=Xenopus laevis GN=gata4 PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query: 69  VEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFD 128
           +E  + F+EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNG+NRPL+K  RRL   
Sbjct: 172 IEFFDDFSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSAS 231

Query: 129 R 129
           R
Sbjct: 232 R 232

Associated with cardiac specification and can regulate cardiac-specific transcription during embryogenesis. Activates the expression of cardiac MHC-alpha in vivo.

Xenopus laevis (taxid: 8355)

>sp|P91623|GATAC_DROME GATA-binding factor C OS=Drosophila melanogaster GN=grn PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/105 (50%), Positives = 67/105 (63%), Gaps = 8/105 (7%)

Query: 19  EGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFA---SLPVEDIEYF 75
           EGRECVNCGA STPLWRRDGTGHYLCNA        G    +R L      L ++ ++  
Sbjct: 257 EGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNG---QNRPLIKPKRRLTLQSLQSA 313

Query: 76  TE--GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
            +  G  C NC   +T LWRR+ +G  +CNACGLY+K++ +NRPL
Sbjct: 314 AKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPL 358

Transcription factor that is vital to the development of multiple organ systems. Binds to the core consensus sequence 5'-WGATAR-3'.

Drosophila melanogaster (taxid: 7227)

>sp|P43691|GATA4_CHICK Transcription factor GATA-4 (Fragment) OS=Gallus gallus GN=GATA4 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 59/77 (76%), Gaps = 3/77 (3%)

Query: 56  YFIMSRFLFASLPVEDIEYF---TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMN 112
           + + SR   A+    +IE+F   +EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMN
Sbjct: 129 HNLQSRGTPAAARHANIEFFDDYSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMN 188

Query: 113 GMNRPLVKQPRRLRFDR 129
           G+NRPL K  RRL   R
Sbjct: 189 GINRPLFKPQRRLSASR 205

Transcriptional activator. Binds to the consensus sequence 5'-AGATAG-3'.

Gallus gallus (taxid: 9031)

>sp|P23773|GATA3_XENLA GATA-binding factor 3 OS=Xenopus laevis GN=gata3 PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/102 (52%), Positives = 63/102 (61%), Gaps = 6/102 (5%)

Query: 18  TEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTE 77
           TEGRECVNCGA STPLWRRDGTGHYLCNA        G    +R L    P   +     
Sbjct: 251 TEGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNG---QNRPLIK--PKRRLSAARR 305

Query: 78  -GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
            G  C NC   +T LWRR+  G  +CNACGLY+K++ +NRPL
Sbjct: 306 AGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPL 347

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
307186218	830	Transcription factor BCFI [Camponotus fl	0.387	0.066	0.915	1e-28
328786707	942	PREDICTED: hypothetical protein LOC72542	0.387	0.058	0.915	1e-28
332016551	833	Transcription factor GATA-4 [Acromyrmex	0.387	0.066	0.915	2e-28
340720273	985	PREDICTED: hypothetical protein LOC10065	0.387	0.055	0.915	2e-28
383863205	941	PREDICTED: uncharacterized protein LOC10	0.387	0.058	0.915	3e-28
307198088	785	Transcription factor GATA-4 [Harpegnatho	0.387	0.070	0.898	1e-27
347967443	1157	AGAP002238-PB [Anopheles gambiae str. PE	0.387	0.047	0.881	5e-27
345491199	461	PREDICTED: hypothetical protein LOC10012	0.387	0.119	0.909	8e-27
56849575	1034	GATAa2 transcription factor [Aedes aegyp	0.647	0.088	0.554	1e-26
157125536	1034	transcription factor GATA-4 (GATA bindin	0.647	0.088	0.554	1e-26

>gi|307186218|gb|EFN71902.1| Transcription factor BCFI [Camponotus floridanus]

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/59 (91%), Positives = 55/59 (93%)

Query: 71  DIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           + EYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL   R
Sbjct: 557 EAEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLSASR 615

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786707|ref|XP_001121273.2| PREDICTED: hypothetical protein LOC725422 [Apis mellifera]

 Score =  130 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/59 (91%), Positives = 55/59 (93%)

Query: 71  DIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           + EYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL   R
Sbjct: 608 EAEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLSASR 666

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016551|gb|EGI57432.1| Transcription factor GATA-4 [Acromyrmex echinatior]

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/59 (91%), Positives = 55/59 (93%)

Query: 71  DIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           + EYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL   R
Sbjct: 560 EAEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLSATR 618

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720273|ref|XP_003398565.1| PREDICTED: hypothetical protein LOC100651336 [Bombus terrestris]

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/59 (91%), Positives = 55/59 (93%)

Query: 71  DIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           + EYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL   R
Sbjct: 686 EAEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLSASR 744

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863205|ref|XP_003707072.1| PREDICTED: uncharacterized protein LOC100875205 [Megachile rotundata]

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/59 (91%), Positives = 55/59 (93%)

Query: 71  DIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           + EYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL   R
Sbjct: 621 EAEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLSASR 679

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198088|gb|EFN79141.1| Transcription factor GATA-4 [Harpegnathos saltator]

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/59 (89%), Positives = 55/59 (93%)

Query: 71  DIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           + EY+TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL   R
Sbjct: 557 EAEYYTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLSATR 615

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967443|ref|XP_003436067.1| AGAP002238-PB [Anopheles gambiae str. PEST] gi|333466293|gb|EGK96194.1| AGAP002238-PB [Anopheles gambiae str. PEST]

 Score =  125 bits (314), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/59 (88%), Positives = 53/59 (89%)

Query: 71  DIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           D + FTEGRECVNCGAI TPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL   R
Sbjct: 754 DADLFTEGRECVNCGAIQTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLSSAR 812

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491199|ref|XP_001607828.2| PREDICTED: hypothetical protein LOC100124017 [Nasonia vitripennis]

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/55 (90%), Positives = 53/55 (96%)

Query: 71  DIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL 125
           + EYFTEGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQ RR+
Sbjct: 402 EAEYFTEGRECVNCGAVSTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQSRRM 456

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56849575|gb|AAW31646.1| GATAa2 transcription factor [Aedes aegypti]

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 68/110 (61%), Gaps = 18/110 (16%)

Query: 30  STPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVE--------------DIEYF 75
           S P W      HY  +A  +ST+ +      R    S+P                + + F
Sbjct: 557 SEPAW----PSHYEASAIAYSTASSNNSSSGRRPSTSVPSTTPFSAAASLTAMGIEADLF 612

Query: 76  TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL 125
           TEGRECVNCGAI TPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL
Sbjct: 613 TEGRECVNCGAIQTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL 662

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125536|ref|XP_001654375.1| transcription factor GATA-4 (GATA binding factor-4) [Aedes aegypti] gi|108873610|gb|EAT37835.1| AAEL010222-PA [Aedes aegypti]

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/110 (55%), Positives = 68/110 (61%), Gaps = 18/110 (16%)

Query: 30  STPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVE--------------DIEYF 75
           S P W      HY  +A  +ST+ +      R    S+P                + + F
Sbjct: 557 SEPAW----PSHYEASAIAYSTASSNNSSSGRRPSTSVPSTTPFSAAASLTAMGIEADLF 612

Query: 76  TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL 125
           TEGRECVNCGAI TPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL
Sbjct: 613 TEGRECVNCGAIQTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL 662

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
FB|FBgn0003117	540	pnr "pannier" [Drosophila mela	0.746	0.196	0.529	1e-24
UNIPROTKB|Q91677	392	gata4 "Transcription factor GA	0.521	0.188	0.658	4.2e-24
UNIPROTKB|P43691	380	GATA4 "Transcription factor GA	0.725	0.271	0.504	5.3e-24
UNIPROTKB|E1C9C6	411	GATA4 "Transcription factor GA	0.718	0.248	0.509	1.4e-23
UNIPROTKB|B3KUF4	236	GATA4 "cDNA FLJ39741 fis, clon	0.387	0.233	0.836	1.8e-23
UNIPROTKB|E9PKS4	175	GATA4 "Transcription factor GA	0.387	0.314	0.836	1.8e-23
UNIPROTKB|P43695	390	gata5-a "GATA-binding factor 5	0.521	0.189	0.662	1.8e-23
UNIPROTKB|B7ZKZ4	443	GATA4 "Transcription factor GA	0.429	0.137	0.770	2.5e-23
UNIPROTKB|D2HDE5	412	PANDA_008702 "Putative unchara	0.676	0.233	0.529	2.5e-23
ZFIN|ZDB-GENE-980526-476	352	gata4 "GATA-binding protein 4"	0.415	0.167	0.774	3.8e-23

FB|FBgn0003117 pnr "pannier" [Drosophila melanogaster (taxid:7227)]

 Score = 288 (106.4 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 62/117 (52%), Positives = 75/117 (64%)

Query:     8 SLPVED-IEY-FTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFA 65
             S P E  +++ F EGRECVNCGAISTPLWRRDGTGHYLCNA        G   M+R L  
Sbjct:   152 SSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNG---MNRPLIK 208

Query:    66 SLPVEDIEYFTEGRE----CVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
               P + +   T  R     C NCG  +T LWRR+  G  +CNACGLY+K++G+NRPL
Sbjct:   209 --PSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPL 263

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA

GO:0000983 "RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IC;ISS;IDA

GO:0001103 "RNA polymerase II repressing transcription factor binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0007391 "dorsal closure" evidence=IMP;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0007350 "blastoderm segmentation" evidence=IMP

GO:0007507 "heart development" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0030154 "cell differentiation" evidence=NAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0007389 "pattern specification process" evidence=NAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=NAS

GO:0042440 "pigment metabolic process" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0008407 "chaeta morphogenesis" evidence=TAS

GO:0007498 "mesoderm development" evidence=NAS

GO:0010002 "cardioblast differentiation" evidence=IMP

GO:0061320 "pericardial nephrocyte differentiation" evidence=IMP

GO:0007510 "cardioblast cell fate determination" evidence=IMP

GO:0007398 "ectoderm development" evidence=TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048542 "lymph gland development" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IPI

GO:0035051 "cardiocyte differentiation" evidence=IMP

GO:0022416 "chaeta development" evidence=IGI

GO:0060047 "heart contraction" evidence=IMP

GO:0002805 "regulation of antimicrobial peptide biosynthetic process" evidence=IMP

UNIPROTKB|Q91677 gata4 "Transcription factor GATA-4" [Xenopus laevis (taxid:8355)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 52/79 (65%), Positives = 61/79 (77%)

Query:    69 VEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFD 128
             +E  + F+EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNG+NRPL+K  RRL   
Sbjct:   172 IEFFDDFSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSAS 231

Query:   129 R----GNFNCYERST-LFR 142
             R       NC+  +T L+R
Sbjct:   232 RRVGLSCANCHTTTTTLWR 250

GO:0005634 "nucleus" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0048738 "cardiac muscle tissue development" evidence=IMP

UNIPROTKB|P43691 GATA4 "Transcription factor GATA-4" [Gallus gallus (taxid:9031)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 55/109 (50%), Positives = 69/109 (63%)

Query:    11 VEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVE 70
             +E  + ++EGRECVNCGA+STPLWRRDGTGHYLCNA        G   ++R LF   P  
Sbjct:   145 IEFFDDYSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNG---INRPLFK--PQR 199

Query:    71 DIEYFTE-GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
              +      G  C NC   +T LWRR+  G  +CNACGLY K++G+ RPL
Sbjct:   200 RLSASRRVGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPL 248

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=TAS

UNIPROTKB|E1C9C6 GATA4 "Transcription factor GATA-4" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 55/108 (50%), Positives = 68/108 (62%)

Query:    12 EDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVED 71
             E  + ++EGRECVNCGA+STPLWRRDGTGHYLCNA        G   ++R LF   P   
Sbjct:   177 EFFDDYSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNG---INRPLFK--PQRR 231

Query:    72 IEYFTE-GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
             +      G  C NC   +T LWRR+  G  +CNACGLY K++G+ RPL
Sbjct:   232 LSASRRVGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPL 279

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0001706 "endoderm formation" evidence=IEA

GO:0003181 "atrioventricular valve morphogenesis" evidence=IEA

GO:0003197 "endocardial cushion development" evidence=IEA

GO:0003229 "ventricular cardiac muscle tissue development" evidence=IEA

GO:0003290 "atrial septum secundum morphogenesis" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0035054 "embryonic heart tube anterior/posterior pattern specification" evidence=IEA

GO:0035239 "tube morphogenesis" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0055007 "cardiac muscle cell differentiation" evidence=IEA

GO:0060008 "Sertoli cell differentiation" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060395 "SMAD protein signal transduction" evidence=IEA

GO:0060464 "lung lobe formation" evidence=IEA

GO:0060575 "intestinal epithelial cell differentiation" evidence=IEA

GO:0071372 "cellular response to follicle-stimulating hormone stimulus" evidence=IEA

GO:0072148 "epithelial cell fate commitment" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

UNIPROTKB|B3KUF4 GATA4 "cDNA FLJ39741 fis, clone SMINT2016544, highly similar to TRANSCRIPTION FACTOR GATA-4" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 46/55 (83%), Positives = 50/55 (90%)

Query:    75 FTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
             F+EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNG+NRPL+K  RRL   R
Sbjct:     5 FSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSASR 59

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0001706 "endoderm formation" evidence=IEA

GO:0003181 "atrioventricular valve morphogenesis" evidence=IEA

GO:0003197 "endocardial cushion development" evidence=IEA

GO:0003229 "ventricular cardiac muscle tissue development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=IEA

GO:0010507 "negative regulation of autophagy" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0033613 "activating transcription factor binding" evidence=IEA

GO:0035054 "embryonic heart tube anterior/posterior pattern specification" evidence=IEA

GO:0035239 "tube morphogenesis" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0051525 "NFAT protein binding" evidence=IEA

GO:0060008 "Sertoli cell differentiation" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060395 "SMAD protein signal transduction" evidence=IEA

GO:0060464 "lung lobe formation" evidence=IEA

GO:0061049 "cell growth involved in cardiac muscle cell development" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0071372 "cellular response to follicle-stimulating hormone stimulus" evidence=IEA

GO:0072148 "epithelial cell fate commitment" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

UNIPROTKB|E9PKS4 GATA4 "Transcription factor GATA-4" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 46/55 (83%), Positives = 50/55 (90%)

Query:    75 FTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
             F+EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNG+NRPL+K  RRL   R
Sbjct:     5 FSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSASR 59

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IEA

GO:0001158 "enhancer sequence-specific DNA binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0001706 "endoderm formation" evidence=IEA

GO:0003181 "atrioventricular valve morphogenesis" evidence=IEA

GO:0003197 "endocardial cushion development" evidence=IEA

GO:0003229 "ventricular cardiac muscle tissue development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=IEA

GO:0010507 "negative regulation of autophagy" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0030509 "BMP signaling pathway" evidence=IEA

GO:0030513 "positive regulation of BMP signaling pathway" evidence=IEA

GO:0033613 "activating transcription factor binding" evidence=IEA

GO:0035054 "embryonic heart tube anterior/posterior pattern specification" evidence=IEA

GO:0035239 "tube morphogenesis" evidence=IEA

GO:0043627 "response to estrogen stimulus" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048557 "embryonic digestive tract morphogenesis" evidence=IEA

GO:0048617 "embryonic foregut morphogenesis" evidence=IEA

GO:0051525 "NFAT protein binding" evidence=IEA

GO:0060008 "Sertoli cell differentiation" evidence=IEA

GO:0060045 "positive regulation of cardiac muscle cell proliferation" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060395 "SMAD protein signal transduction" evidence=IEA

GO:0060464 "lung lobe formation" evidence=IEA

GO:0061049 "cell growth involved in cardiac muscle cell development" evidence=IEA

GO:0071333 "cellular response to glucose stimulus" evidence=IEA

GO:0071372 "cellular response to follicle-stimulating hormone stimulus" evidence=IEA

GO:0072148 "epithelial cell fate commitment" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

UNIPROTKB|P43695 gata5-a "GATA-binding factor 5-A" [Xenopus laevis (taxid:8355)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 53/80 (66%), Positives = 61/80 (76%)

Query:    69 VEDIEYFT-EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRF 127
             +E +E F  EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNGMNRPL+K  +RL  
Sbjct:   170 LEFLEEFPGEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGMNRPLIKPQKRLSS 229

Query:   128 DRGN----FNCY-ERSTLFR 142
              R       NC+   +TL+R
Sbjct:   230 SRRAGLCCTNCHTSTTTLWR 249

GO:0005634 "nucleus" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

UNIPROTKB|B7ZKZ4 GATA4 "Transcription factor GATA-4" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 2.5e-23, P = 2.5e-23
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query:    69 VEDIEYFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFD 128
             V+  + F+EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNG+NRPL+K  RRL   
Sbjct:   206 VDMFDDFSEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLIKPQRRLSAS 265

Query:   129 R 129
             R
Sbjct:   266 R 266

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|D2HDE5 PANDA_008702 "Putative uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 270 (100.1 bits), Expect = 2.5e-23, P = 2.5e-23
 Identities = 54/102 (52%), Positives = 63/102 (61%)

Query:    18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTE 77
             TEGRECVNCGA STPLWRRDGTGHYLCNA        G    +R L    P   +     
Sbjct:   227 TEGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNG---QNRPLIK--PKRRLSAARR 281

Query:    78 -GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
              G  C NC   +T LWRR+  G  +CNACGLY+K++ +NRPL
Sbjct:   282 AGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPL 323

GO:0000790 "nuclear chromatin" evidence=ISS

GO:0000987 "core promoter proximal region sequence-specific DNA binding" evidence=ISS

GO:0001071 "nucleic acid binding transcription factor activity" evidence=ISS

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

GO:0001709 "cell fate determination" evidence=ISS

GO:0001822 "kidney development" evidence=ISS

GO:0001823 "mesonephros development" evidence=ISS

GO:0003180 "aortic valve morphogenesis" evidence=ISS

GO:0003215 "cardiac right ventricle morphogenesis" evidence=ISS

GO:0003281 "ventricular septum development" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007165 "signal transduction" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0008584 "male gonad development" evidence=ISS

GO:0009967 "positive regulation of signal transduction" evidence=ISS

GO:0010595 "positive regulation of endothelial cell migration" evidence=ISS

GO:0014065 "phosphatidylinositol 3-kinase cascade" evidence=ISS

GO:0031929 "TOR signaling cascade" evidence=ISS

GO:0032753 "positive regulation of interleukin-4 production" evidence=ISS

GO:0042035 "regulation of cytokine biosynthetic process" evidence=ISS

GO:0042421 "norepinephrine biosynthetic process" evidence=ISS

GO:0043583 "ear development" evidence=ISS

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS

GO:0045582 "positive regulation of T cell differentiation" evidence=ISS

GO:0045599 "negative regulation of fat cell differentiation" evidence=ISS

GO:0045786 "negative regulation of cell cycle" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0048485 "sympathetic nervous system development" evidence=ISS

GO:0048646 "anatomical structure formation involved in morphogenesis" evidence=ISS

GO:0050728 "negative regulation of inflammatory response" evidence=ISS

GO:0050852 "T cell receptor signaling pathway" evidence=ISS

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=ISS

GO:0060037 "pharyngeal system development" evidence=ISS

GO:0060065 "uterus development" evidence=ISS

GO:0060231 "mesenchymal to epithelial transition" evidence=ISS

GO:0060676 "ureteric bud formation" evidence=ISS

GO:0061290 "canonical Wnt receptor signaling pathway involved in metanephric kidney development" evidence=ISS

GO:0070888 "E-box binding" evidence=ISS

GO:0072107 "positive regulation of ureteric bud formation" evidence=ISS

GO:0072178 "nephric duct morphogenesis" evidence=ISS

GO:0072179 "nephric duct formation" evidence=ISS

GO:0072182 "regulation of nephron tubule epithelial cell differentiation" evidence=ISS

GO:0072676 "lymphocyte migration" evidence=ISS

GO:2000146 "negative regulation of cell motility" evidence=ISS

GO:2000352 "negative regulation of endothelial cell apoptotic process" evidence=ISS

GO:2000607 "negative regulation of cell proliferation involved in mesonephros development" evidence=ISS

GO:2000611 "positive regulation of thyroid hormone generation" evidence=ISS

GO:2000664 "positive regulation of interleukin-5 secretion" evidence=ISS

GO:2000667 "positive regulation of interleukin-13 secretion" evidence=ISS

GO:2000679 "positive regulation of transcription regulatory region DNA binding" evidence=ISS

GO:2000683 "regulation of cellular response to X-ray" evidence=ISS

GO:2000703 "negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation" evidence=ISS

GO:2000734 "negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation" evidence=ISS

ZFIN|ZDB-GENE-980526-476 gata4 "GATA-binding protein 4" [Danio rerio (taxid:7955)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 48/62 (77%), Positives = 53/62 (85%)

Query:    71 DIEYFT---EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRF 127
             ++E+F    EGRECVNCGA+STPLWRRDGTGHYLCNACGLYHKMNG+NRPLVK  RRL  
Sbjct:   157 NLEFFDDLGEGRECVNCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINRPLVKPQRRLSA 216

Query:   128 DR 129
              R
Sbjct:   217 SR 218

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001889 "liver development" evidence=IMP

GO:0030099 "myeloid cell differentiation" evidence=IGI

GO:0060975 "cardioblast migration to the midline involved in heart field formation" evidence=IGI

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0001947 "heart looping" evidence=IGI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P43691	GATA4_CHICK	No assigned EC number	0.6623	0.5211	0.1947	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	142
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	7e-16
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	1e-12
pfam00320	36	pfam00320, GATA, GATA zinc finger	1e-12
COG5641	498	COG5641, GAT1, GATA Zn-finger-containing transcrip	9e-08
pfam00320	36	pfam00320, GATA, GATA zinc finger	9e-07
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	1e-06
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	3e-06

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 66.6 bits (163), Expect = 7e-16
 Identities = 25/46 (54%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 80  ECVNCGAISTPLWRRDG-TGHYLCNACGLYHKMNGMNRPLVKQPRR 124
            C NCG  +TPLWRR    G  LCNACGLY K +G+ RPL K+ + 
Sbjct: 1   ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKD 46

Length = 54

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 58.2 bits (141), Expect = 1e-12
 Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 2/44 (4%)

Query: 77  EGRECVNCGAISTPLWRRDGTGH-YLCNACGLYHKMNG-MNRPL 118
            GR C NCG   TPLWRR  +G+  LCNACGLY+K +G + RPL
Sbjct: 2   SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPL 45

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 57.7 bits (140), Expect = 1e-12
 Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 81  CVNCGAISTPLWRRDGTGHY-LCNACGLYHKMNGMN 115
           C NCG   TPLWRR   G+  LCNACGLY++ +G+ 
Sbjct: 1   CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|227928 COG5641, GAT1, GATA Zn-finger-containing transcription factor [Transcription]

 Score = 49.5 bits (118), Expect = 9e-08
 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 5/45 (11%)

Query: 81  CVNCGAISTPLWRRD-----GTGHYLCNACGLYHKMNGMNRPLVK 120
           C NC   STPLWRR        G+ LCNACGLY K++G  R  + 
Sbjct: 161 CSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRAPIS 205

Length = 498

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 42.6 bits (101), Expect = 9e-07
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 23 CVNCGAISTPLWRRDGTGHY-LCNA 46
          C NCG   TPLWRR   G+  LCNA
Sbjct: 1  CSNCGTTKTPLWRRGPDGNRTLCNA 25

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 22 ECVNCGAISTPLWRRDG-TGHYLCNA 46
           C NCG  +TPLWRR    G  LCNA
Sbjct: 1  ACSNCGTTTTPLWRRGPSGGSTLCNA 26

Length = 54

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 41.6 bits (98), Expect = 3e-06
 Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 19 EGRECVNCGAISTPLWRRDGTGH-YLCNA 46
           GR C NCG   TPLWRR  +G+  LCNA
Sbjct: 2  SGRSCSNCGTTETPLWRRGPSGNKTLCNA 30

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.69
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.64
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.52
KOG1601|consensus	340		99.3
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	98.99
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	98.99
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	98.97
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.95
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.91
KOG1601|consensus	340		97.73
TIGR01384	104	TFS_arch transcription factor S, archaeal. There h	91.12
KOG3554|consensus	693		88.53
PF12773	50	DZR: Double zinc ribbon	86.44
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	85.45
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	81.74
PRK12286	57	rpmF 50S ribosomal protein L32; Reviewed	80.8
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	80.62

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.69  E-value=1.6e-17  Score=108.48  Aligned_cols=43  Identities=58%  Similarity=1.202  Sum_probs=40.7

Q ss_pred             cccccCCCCCCccccCCCC-CcccchhhhhHHhcCCCCCCCCCC
Q psy12567         80 ECVNCGAISTPLWRRDGTG-HYLCNACGLYHKMNGMNRPLVKQP  122 (142)
Q Consensus        80 ~C~nC~tt~Tp~WRr~~~G-~~lCNaCGly~k~~~~~RP~~~~k  122 (142)
                      +|+||++++||+||++++| ..|||||||||++++..||+.+++
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRK   44 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCc
Confidence            5999999999999999965 799999999999999999999988

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.64  E-value=1.4e-16  Score=103.09  Aligned_cols=48  Identities=54%  Similarity=1.056  Sum_probs=43.8

Q ss_pred             CCccccccCCCCCCccccCCCCC-cccchhhhhHHhcCCC-CCCCCCCCC
Q psy12567         77 EGRECVNCGAISTPLWRRDGTGH-YLCNACGLYHKMNGMN-RPLVKQPRR  124 (142)
Q Consensus        77 ~~~~C~nC~tt~Tp~WRr~~~G~-~lCNaCGly~k~~~~~-RP~~~~k~~  124 (142)
                      ....|+||++++||+||+++.|. .|||||||||++++.. ||+.+.+..
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~~~~   51 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKDV   51 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCCCCcccccccC
Confidence            36789999999999999999996 9999999999999998 999887754

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.52  E-value=2.2e-15  Score=90.83  Aligned_cols=35  Identities=57%  Similarity=1.165  Sum_probs=28.2

Q ss_pred             ccccCCCCCCccccCCCCCc-ccchhhhhHHhcCCC
Q psy12567         81 CVNCGAISTPLWRRDGTGHY-LCNACGLYHKMNGMN  115 (142)
Q Consensus        81 C~nC~tt~Tp~WRr~~~G~~-lCNaCGly~k~~~~~  115 (142)
                      |+||+|++||+||++++|.. |||||||||++++++
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~~   36 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGKM   36 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS-
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            89999999999999999975 999999999998863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601|consensus

Probab=99.30  E-value=3.7e-12  Score=98.57  Aligned_cols=104  Identities=36%  Similarity=0.544  Sum_probs=74.2

Q ss_pred             cccccCCCCCCCCcccCCCCcccccccccccccccccccccc--cccCCCccccccCCCCccccccCCCCCCccccCCCC
Q psy12567         21 RECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRF--LFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGTG   98 (142)
Q Consensus        21 ~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~~~~~R~--~~~~~~~~~~~~~~~~~~C~nC~tt~Tp~WRr~~~G   98 (142)
                      .+|.+++...||.|+.+..+++.+..+..+....+   ..+.  .........+........|.+|+++.||+||+++.|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~t~~~r~~~~g  219 (340)
T KOG1601|consen  143 GESVSSLLFPTPLQRRDSSGHYNSINKELKKKSNG---ESSSDLESKPKKSSSASSEQNLRQCSNCGTTKTPLWRRGPEG  219 (340)
T ss_pred             cccccccccccceeccCCCCccccccccccccccc---cccCCccccchhhhhccccccCcccCCCCCCCCcceecCCCC
Confidence            38999999999999999888888888862222222   1111  111111111122122589999999999999999999


Q ss_pred             -CcccchhhhhHHhcCCCCCCCCCCCCccc
Q psy12567         99 -HYLCNACGLYHKMNGMNRPLVKQPRRLRF  127 (142)
Q Consensus        99 -~~lCNaCGly~k~~~~~RP~~~~k~~~~~  127 (142)
                       +.+|||||+|++++++.|++.+.+..+..
T Consensus       220 ~~~~cnacgl~~k~~~~~r~~~~~~~~~~~  249 (340)
T KOG1601|consen  220 PKSLCNACGLRYKKGGVRRPLPEKRPASSP  249 (340)
T ss_pred             CccccccchhhhhhcCccccccccCccccc
Confidence             89999999999999988888776655443

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=98.99  E-value=8.6e-11  Score=76.70  Aligned_cols=34  Identities=47%  Similarity=0.891  Sum_probs=30.2

Q ss_pred             ccccCCCCCCCCcccCCC-Cccccccccccccccc
Q psy12567         22 ECVNCGAISTPLWRRDGT-GHYLCNARLFSTSFTG   55 (142)
Q Consensus        22 ~C~nCgt~~TplWr~~~~-g~~lCnacg~~~k~~G   55 (142)
                      +|+||+++.||+||+++. +..||||||+|.+..+
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~   35 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG   35 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC
Confidence            599999999999999995 5899999999876665

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=98.99  E-value=1.7e-10  Score=74.59  Aligned_cols=38  Identities=47%  Similarity=0.879  Sum_probs=33.2

Q ss_pred             CCcccccCCCCCCCCcccCCCCc-ccccccccccccccc
Q psy12567         19 EGRECVNCGAISTPLWRRDGTGH-YLCNARLFSTSFTGY   56 (142)
Q Consensus        19 ~~~~C~nCgt~~TplWr~~~~g~-~lCnacg~~~k~~G~   56 (142)
                      ..+.|+||+++.||+||+++.|. .||||||++.+..+.
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~   40 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG   40 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCC
Confidence            46799999999999999999996 999999988765553

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.97  E-value=4.8e-11  Score=71.85  Aligned_cols=33  Identities=45%  Similarity=0.853  Sum_probs=25.1

Q ss_pred             cccCCCCCCCCcccCCCCcc-ccccccccccccc
Q psy12567         23 CVNCGAISTPLWRRDGTGHY-LCNARLFSTSFTG   55 (142)
Q Consensus        23 C~nCgt~~TplWr~~~~g~~-lCnacg~~~k~~G   55 (142)
                      |++|+++.||+||+++.|.. ||||||++.+..+
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~   34 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYG   34 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhC
Confidence            89999999999999999976 9999998765443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.95  E-value=9.4e-10  Score=98.64  Aligned_cols=61  Identities=30%  Similarity=0.532  Sum_probs=43.7

Q ss_pred             CCccccccCC-CCCCccccCCC-CCcccchhhhhHHhcCCCCCCCCCCCCccc-cc-CCCCCCcc
Q psy12567         77 EGRECVNCGA-ISTPLWRRDGT-GHYLCNACGLYHKMNGMNRPLVKQPRRLRF-DR-GNFNCYER  137 (142)
Q Consensus        77 ~~~~C~nC~t-t~Tp~WRr~~~-G~~lCNaCGly~k~~~~~RP~~~~k~~~~~-~R-~~~n~~~~  137 (142)
                      ....+.+|.+ +.||+||+... +-++||||+++-+.++..||+..+-+.... .+ -.|||++-
T Consensus       296 s~~~~s~~~~~~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~d~n~~~~~~~~~N~s~~  360 (498)
T COG5641         296 SDKKRSTLTTSTATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNSKRSNATCMNCSST  360 (498)
T ss_pred             hhcCcccccccccCcccccccccccccccccccccCCcccccccCCCCChhhhhhhheecccccc
Confidence            3567888887 77888888765 579999999999999999999764332111 00 34777654

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.91  E-value=4.5e-10  Score=100.69  Aligned_cols=50  Identities=46%  Similarity=0.979  Sum_probs=44.9

Q ss_pred             CccccccCCCCCCccccCCC-----CCcccchhhhhHHhcCCCC-CCCCCCCCccc
Q psy12567         78 GRECVNCGAISTPLWRRDGT-----GHYLCNACGLYHKMNGMNR-PLVKQPRRLRF  127 (142)
Q Consensus        78 ~~~C~nC~tt~Tp~WRr~~~-----G~~lCNaCGly~k~~~~~R-P~~~~k~~~~~  127 (142)
                      ..+|.||.|+.||+|||+..     |.+||||||||+++||++| |+.++..-+.+
T Consensus       158 ~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~P~t~ks~~~ks  213 (498)
T COG5641         158 PHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRAPISLKSDSIKS  213 (498)
T ss_pred             cchhccccccCCccccccccccccCCccccccccccccccCCcCCCcccccccccc
Confidence            34999999999999999999     8999999999999999999 99887665543

>KOG1601|consensus

Probab=97.73  E-value=1.8e-05  Score=61.19  Aligned_cols=36  Identities=47%  Similarity=0.863  Sum_probs=33.0

Q ss_pred             CcccccCCCCCCCCcccCCCC-ccccccccccccccc
Q psy12567         20 GRECVNCGAISTPLWRRDGTG-HYLCNARLFSTSFTG   55 (142)
Q Consensus        20 ~~~C~nCgt~~TplWr~~~~g-~~lCnacg~~~k~~G   55 (142)
                      ...|.+|++..||+||+++.| +.+|||||++.+..+
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~  235 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGG  235 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcC
Confidence            589999999999999999999 999999999877664

>TIGR01384 TFS_arch transcription factor S, archaeal

Probab=91.12  E-value=0.21  Score=35.39  Aligned_cols=83  Identities=28%  Similarity=0.637  Sum_probs=47.3

Q ss_pred             ccccCCCCCCCCcccCCCCcccccccccccccc---cccccccccccCC--C--c--ccc-ccCCCCccccccCCCCCCc
Q psy12567         22 ECVNCGAISTPLWRRDGTGHYLCNARLFSTSFT---GYFIMSRFLFASL--P--V--EDI-EYFTEGRECVNCGAISTPL   91 (142)
Q Consensus        22 ~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~---G~~~~~R~~~~~~--~--~--~~~-~~~~~~~~C~nC~tt~Tp~   91 (142)
                      -|.+||+.-.|.     .+.+.|..|++.....   .+....+ +..+.  .  .  ... ........|.+||...--.
T Consensus         2 fC~~Cg~~l~~~-----~~~~~C~~C~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Cp~Cg~~~a~f   75 (104)
T TIGR01384         2 FCPKCGSLMTPK-----NGVYVCPSCGYEKEKKPEDDYKVTEK-VKHKIKETIIIREEDSETLPTTRVECPKCGHKEAYY   75 (104)
T ss_pred             CCcccCcccccC-----CCeEECcCCCCccccccccccEEEEE-eccccccceeeccccccCCCcccCCCCCCCCCeeEE
Confidence            589999987652     3578999999754321   1111111 11100  0  0  000 1123468999999776433


Q ss_pred             c----ccCCCCC---cccchhhhhHH
Q psy12567         92 W----RRDGTGH---YLCNACGLYHK  110 (142)
Q Consensus        92 W----Rr~~~G~---~lCNaCGly~k  110 (142)
                      |    |..++|.   ++|-.||..|+
T Consensus        76 ~~~Q~RsadE~~T~fy~C~~C~~~w~  101 (104)
T TIGR01384        76 WLLQTRRADEPETRFYKCTKCGYVWR  101 (104)
T ss_pred             EEeccCCCCCCcEEEEEeCCCCCeeE
Confidence            3    4455563   79999998775

There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.

>KOG3554|consensus

Probab=88.53  E-value=0.26  Score=45.16  Aligned_cols=37  Identities=30%  Similarity=0.695  Sum_probs=31.2

Q ss_pred             CCccccccCCCCCCccc-cCCCC--CcccchhhhhHHhcC
Q psy12567         77 EGRECVNCGAISTPLWR-RDGTG--HYLCNACGLYHKMNG  113 (142)
Q Consensus        77 ~~~~C~nC~tt~Tp~WR-r~~~G--~~lCNaCGly~k~~~  113 (142)
                      .++.|.+|+|++.-.|= .||.|  ..||-.|-+|||+.|
T Consensus       385 ~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKyg  424 (693)
T KOG3554|consen  385 DGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYG  424 (693)
T ss_pred             CCCcccccccccccceeccCCCCccchhhHHHHHHHHHhc
Confidence            37899999999999873 47776  479999999999975

>PF12773 DZR: Double zinc ribbon

Probab=86.44  E-value=0.84  Score=28.12  Aligned_cols=13  Identities=46%  Similarity=0.994  Sum_probs=7.3

Q ss_pred             CccccccCCCCCC
Q psy12567         78 GRECVNCGAISTP   90 (142)
Q Consensus        78 ~~~C~nC~tt~Tp   90 (142)
                      ...|.+|++...+
T Consensus        29 ~~~C~~Cg~~~~~   41 (50)
T PF12773_consen   29 KKICPNCGAENPP   41 (50)
T ss_pred             CCCCcCCcCCCcC
Confidence            4566666665433

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.45  E-value=0.4  Score=29.20  Aligned_cols=26  Identities=23%  Similarity=0.533  Sum_probs=19.1

Q ss_pred             ccccCCCCCCCCcccCCCCccccccccc
Q psy12567         22 ECVNCGAISTPLWRRDGTGHYLCNARLF   49 (142)
Q Consensus        22 ~C~nCgt~~TplWr~~~~g~~lCnacg~   49 (142)
                      .|.+||+..  +--...+|.++|..||+
T Consensus         2 ~Cp~Cg~~~--~~~D~~~g~~vC~~CG~   27 (43)
T PF08271_consen    2 KCPNCGSKE--IVFDPERGELVCPNCGL   27 (43)
T ss_dssp             SBTTTSSSE--EEEETTTTEEEETTT-B
T ss_pred             CCcCCcCCc--eEEcCCCCeEECCCCCC
Confidence            599999966  33345678999999974

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=81.74  E-value=0.79  Score=39.60  Aligned_cols=29  Identities=31%  Similarity=0.855  Sum_probs=26.7

Q ss_pred             CCCcccccCCCCCCCCcccCCCCccccccc
Q psy12567         18 TEGRECVNCGAISTPLWRRDGTGHYLCNAR   47 (142)
Q Consensus        18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnac   47 (142)
                      .+-..|.+||+.. |.|-.-.=|-+||..|
T Consensus        18 ~~Nk~CaDCga~~-P~W~S~nlGvfiCi~C   46 (319)
T COG5347          18 SSNKKCADCGAPN-PTWASVNLGVFLCIDC   46 (319)
T ss_pred             cccCccccCCCCC-CceEecccCeEEEeec
Confidence            5567999999999 9998888899999999

>PRK12286 rpmF 50S ribosomal protein L32; Reviewed

Probab=80.80  E-value=0.99  Score=29.67  Aligned_cols=25  Identities=32%  Similarity=0.616  Sum_probs=20.4

Q ss_pred             CCcccccCCCCCCCCcccCCCCccccccccccc
Q psy12567         19 EGRECVNCGAISTPLWRRDGTGHYLCNARLFST   51 (142)
Q Consensus        19 ~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~   51 (142)
                      .--+|.+||...-|        |.+|..||+|.
T Consensus        26 ~l~~C~~CG~~~~~--------H~vC~~CG~Y~   50 (57)
T PRK12286         26 GLVECPNCGEPKLP--------HRVCPSCGYYK   50 (57)
T ss_pred             cceECCCCCCccCC--------eEECCCCCcCC
Confidence            34579999987776        77999999885

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=80.62  E-value=1  Score=32.84  Aligned_cols=39  Identities=31%  Similarity=0.730  Sum_probs=28.0

Q ss_pred             CCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCC
Q psy12567         75 FTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGM  114 (142)
Q Consensus        75 ~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~  114 (142)
                      ......|++|+... |.|-.-.-|-.||-.|.-..+..|+
T Consensus        10 ~~~N~~CaDCg~~~-p~w~s~~~GiflC~~Cag~HR~lg~   48 (116)
T PF01412_consen   10 KPGNKVCADCGAPN-PTWASLNYGIFLCLECAGIHRSLGV   48 (116)
T ss_dssp             STTCTB-TTT-SBS---EEETTTTEEE-HHHHHHHHHHTT
T ss_pred             CcCcCcCCCCCCCC-CCEEEeecChhhhHHHHHHHHHhcc
Confidence            46789999999665 5999999999999999887776664

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
4hc7_A	115	Crystal Structure Of The Full Dna Binding Domain Of		6e-22
4hc7_A	115	Crystal Structure Of The Full Dna Binding Domain Of		1e-21
3vd6_C	119	Both Zn Fingers Of Gata1 Bound To Palindromic Dna R		3e-19
1y0j_A	46	Zinc Fingers As Protein Recognition Motifs: Structu		3e-18
1gnf_A	46	Solution Structure Of The N-Terminal Zinc Finger Of		5e-18
2l6y_A	39	Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid Length =		1e-15
3dfv_D	63	Adjacent Gata Dna Binding Length = 63		8e-09
2vus_I	43	Crystal Structure Of Unliganded Nmra-Area Zinc Fing		1e-07
4gat_A	66	Solution Nmr Structure Of The Wild Type Dna Binding		1e-07
1gat_A	60	Solution Structure Of The Specific Dna Complex Of T		2e-07
3gat_A	66	Solution Nmr Structure Of The C-Terminal Domain Of		2e-07
7gat_A	66	Solution Nmr Structure Of The L22v Mutant Dna Bindi		3e-07

>pdb|4HC7|A Chain A, Crystal Structure Of The Full Dna Binding Domain Of Gata3-Complex 2 Length = 115

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 61/101 (60%), Gaps = 6/101 (5%)
Query: 20  GRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTE-G 78
           GRECVNCGA STPLWRRDGTGHYLCNA        G    +R L    P   +      G
Sbjct: 5   GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNG---QNRPLIK--PKRRLSAARRAG 59
Query: 79  RECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
             C NC   +T LWRR+  G  +CNACGLY+K++ +NRPL 
Sbjct: 60  TSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLT 100

>pdb|4HC7|A Chain A, Crystal Structure Of The Full Dna Binding Domain Of Gata3-Complex 2 Length = 115

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 45/52 (86%)
Query: 78  GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR 129
           GRECVNCGA STPLWRRDGTGHYLCNACGLYHKMNG NRPL+K  RRL   R
Sbjct: 5   GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAAR 56

>pdb|3VD6|C Chain C, Both Zn Fingers Of Gata1 Bound To Palindromic Dna Recognition Site, P21 Crystal Form Length = 119

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 43/49 (87%)
Query: 77  EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRL 125
           E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG NRPL++  +R+
Sbjct: 1   EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIRPKKRM 49

>pdb|1Y0J|A Chain A, Zinc Fingers As Protein Recognition Motifs: Structural Basis For The Gata-1FRIEND OF GATA INTERACTION Length = 46

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 76  TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVK 120
           +E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG NRPL++
Sbjct: 2   SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIR 46

>pdb|1GNF|A Chain A, Solution Structure Of The N-Terminal Zinc Finger Of Murine Gata-1, Nmr, 25 Structures Length = 46

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 37/44 (84%), Positives = 40/44 (90%)
Query: 76  TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
           +E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG NRPL+
Sbjct: 2   SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLI 45

>pdb|2L6Y|A Chain A, Haddock Model Of Gata1nf:lmo2lim2-Ldb1lid Length = 39

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 35/39 (89%)
Query: 77  EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 115
           E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG N
Sbjct: 1   EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 39

>pdb|3DFV|D Chain D, Adjacent Gata Dna Binding Length = 63

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 78  GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
           G  C NC   +T LWRR+  G  +CNACGLY+K++ +NRPL 
Sbjct: 7   GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLT 48

>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger Complex Length = 43

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 81  CVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
           C NC   +TPLWRR+  G  LCNACGL+ K++G+ RPL
Sbjct: 4   CTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPL 41

>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain Of Area Complexed To A 13bp Dna Containing A Cgata Site, Regularized Mean Structure Length = 66

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 81  CVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
           C NC   +TPLWRR+  G  LCNACGL+ K++G+ RPL
Sbjct: 12  CTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPL 49

>pdb|1GAT|A Chain A, Solution Structure Of The Specific Dna Complex Of The Zinc Containing Dna Binding Domain Of The Erythroid Transcription Factor Gata-1 By Multidimensional Nmr Length = 60

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 78  GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
           G  C NC   +T LWRR   G  +CNACGLY+K++ +NRPL 
Sbjct: 4   GTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLT 45

>pdb|3GAT|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of Chicken Gata-1 Bound To Dna, 34 Structures Length = 66

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 78  GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLV 119
           G  C NC   +T LWRR   G  +CNACGLY+K++ +NRPL 
Sbjct: 4   GTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLT 45

>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding Domain Of Area Complexed To A 13 Bp Dna Containing A Tgata Site, 34 Structures Length = 66

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 81  CVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
           C NC   +TP+WRR+  G  LCNACGL+ K++G+ RPL
Sbjct: 12  CTNCFTQTTPVWRRNPEGQPLCNACGLFLKLHGVVRPL 49

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	3e-22
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	9e-12
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	7e-17
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	2e-07
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	4e-16
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	1e-07
3dfx_A	63	Trans-acting T-cell-specific transcription factor	4e-15
3dfx_A	63	Trans-acting T-cell-specific transcription factor	1e-07
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	1e-14
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	2e-07

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 82.5 bits (204), Expect = 3e-22
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 76  TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVK 120
           +E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG NRPL++
Sbjct: 2   SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIR 46

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 55.1 bits (133), Expect = 9e-12
 Identities = 24/29 (82%), Positives = 26/29 (89%)

Query: 18 TEGRECVNCGAISTPLWRRDGTGHYLCNA 46
          +E RECVNCGA +TPLWRRD TGHYLCNA
Sbjct: 2  SEARECVNCGATATPLWRRDRTGHYLCNA 30

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 69.1 bits (169), Expect = 7e-17
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 76  TEGRECVNCGAISTPLWRRDGTG-HYLCNACGLYHKMNGMNRPL 118
            +  +C NC    T  WR   +     CNAC +Y +     RP+
Sbjct: 6   KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPV 49

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 18 TEGRECVNCGAISTPLWRRDGTG-HYLCNA 46
           +  +C NC    T  WR   +     CNA
Sbjct: 6  KKSFQCSNCSVTETIRWRNIRSKEGIQCNA 35

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 66.3 bits (162), Expect = 4e-16
 Identities = 22/40 (55%), Positives = 28/40 (70%)

Query: 79  RECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
             C NC   +TPLWRR+  G  LCNACGL+ K++G+ RPL
Sbjct: 2   TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPL 41

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 44.4 bits (105), Expect = 1e-07
 Identities = 14/26 (53%), Positives = 16/26 (61%)

Query: 21 RECVNCGAISTPLWRRDGTGHYLCNA 46
            C NC   +TPLWRR+  G  LCNA
Sbjct: 2  TTCTNCFTQTTPLWRRNPEGQPLCNA 27

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 64.3 bits (156), Expect = 4e-15
 Identities = 22/42 (52%), Positives = 29/42 (69%)

Query: 77  EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
            G  C NC   +T LWRR+  G  +CNACGLY+K++ +NRPL
Sbjct: 6   AGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPL 47

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 45.0 bits (106), Expect = 1e-07
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 19 EGRECVNCGAISTPLWRRDGTGHYLCNA 46
           G  C NC   +T LWRR+  G  +CNA
Sbjct: 6  AGTSCANCQTTTTTLWRRNANGDPVCNA 33

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 63.5 bits (154), Expect = 1e-14
 Identities = 22/41 (53%), Positives = 28/41 (68%)

Query: 78  GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
              C NC   +TPLWRR+  G  LCNACGL+ K++G+ RPL
Sbjct: 9   PTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPL 49

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 44.7 bits (105), Expect = 2e-07
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 20 GRECVNCGAISTPLWRRDGTGHYLCNA 46
             C NC   +TPLWRR+  G  LCNA
Sbjct: 9  PTTCTNCFTQTTPLWRRNPEGQPLCNA 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	100.0
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.84
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.83
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.82
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.81
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.75
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.74
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.49
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.36
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.33
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.3
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.14
3h0g_I	113	DNA-directed RNA polymerases I, II, and III subuni	91.37
1twf_I	122	B12.6, DNA-directed RNA polymerase II 14.2 kDa pol	87.75
3qt1_I	133	DNA-directed RNA polymerases I, II, and III subun;	86.15
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	85.17
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	84.19
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	82.2
2owa_A	138	Arfgap-like finger domain containing protein; zinc	81.91
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	80.74
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	80.4

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=100.00  E-value=8.1e-37  Score=225.24  Aligned_cols=110  Identities=46%  Similarity=0.876  Sum_probs=91.1

Q ss_pred             CCCcccccCCCCCCCCcccCCCCcccccccccccccccccccccccccCCCccccccCCCCccccccCCCCCCccccCCC
Q psy12567         18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFLFASLPVEDIEYFTEGRECVNCGAISTPLWRRDGT   97 (142)
Q Consensus        18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~~~~~R~~~~~~~~~~~~~~~~~~~C~nC~tt~Tp~WRr~~~   97 (142)
                      ..+++|+|||++.||+||++++|++||||||+|.+.+|   .+||.++.. .+..........|+||+|++||+||+|++
T Consensus         3 ~~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G---~nRP~~KpK-KR~~~~~~~~~~C~~C~t~~tp~WRr~~~   78 (115)
T 4hc9_A            3 HMGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNG---QNRPLIKPK-RRLSAARRAGTSCANCQTTTTTLWRRNAN   78 (115)
T ss_dssp             ---CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHS---SCCCCSSCC-CCCCCCCCTTCCCTTTCCSCCSSCEECTT
T ss_pred             CCCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcc---ccccccccc-ccccccccccccCCCcCCCCcceeEECCC
Confidence            35789999999999999999999999999999988887   466654422 22233446679999999999999999999


Q ss_pred             CCcccchhhhhHHhcCCCCCCCCCCCCcccccCC
Q psy12567         98 GHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRGN  131 (142)
Q Consensus        98 G~~lCNaCGly~k~~~~~RP~~~~k~~~~~~R~~  131 (142)
                      |++|||||||||++|+++||++|++..|...+|.
T Consensus        79 g~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~  112 (115)
T 4hc9_A           79 GDPVCNACGLYYKLHNINRPLTMKKEGIQTRNRK  112 (115)
T ss_dssp             SCEECHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred             CCCcchHHHHHHHHhCCCCCccccccchhhcccc
Confidence            9999999999999999999999999888776543

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.84  E-value=1.2e-21  Score=130.86  Aligned_cols=55  Identities=40%  Similarity=0.899  Sum_probs=49.9

Q ss_pred             CCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCCCCCCcccccC
Q psy12567         76 TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRG  130 (142)
Q Consensus        76 ~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~~k~~~~~~R~  130 (142)
                      .....|+||++++||+||+|++|.+|||||||||++|+++||+.|+++.|....|
T Consensus         5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~RP~~~~~~~i~~R~R   59 (63)
T 3dfx_A            5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNINRPLTMKKEGIQTRNR   59 (63)
T ss_dssp             CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSCCCGGGCCSSCCCCC-
T ss_pred             CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCCCCcCcCCCccccccC
Confidence            5578999999999999999999999999999999999999999999988775543

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.83  E-value=1.7e-21  Score=131.24  Aligned_cols=57  Identities=40%  Similarity=0.803  Sum_probs=51.8

Q ss_pred             CCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCCCCCCcccccCCC
Q psy12567         76 TEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRGNF  132 (142)
Q Consensus        76 ~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~~k~~~~~~R~~~  132 (142)
                      .....|+||+|++||+||+|++|.+|||||||||++|+++||+.|++..|....|..
T Consensus         7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~   63 (66)
T 4gat_A            7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNS   63 (66)
T ss_dssp             SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSC
T ss_pred             CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCCCchhhccccccccccCC
Confidence            457999999999999999999999999999999999999999999998887665543

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.82  E-value=6.1e-21  Score=120.37  Aligned_cols=44  Identities=84%  Similarity=1.639  Sum_probs=41.7

Q ss_pred             CCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCC
Q psy12567         77 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVK  120 (142)
Q Consensus        77 ~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~  120 (142)
                      +...|+||++++||+||++++|.+|||||||||++|+++||+++
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~~   46 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQNRPLIR   46 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSCCCCCC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCCCCCCC
Confidence            46889999999999999999999999999999999999999974

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.81  E-value=5.3e-21  Score=119.08  Aligned_cols=42  Identities=52%  Similarity=1.092  Sum_probs=40.4

Q ss_pred             ccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCC
Q psy12567         79 RECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVK  120 (142)
Q Consensus        79 ~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~  120 (142)
                      ..|++|++++||+||+|++|.+|||||||||++|+++||++|
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~RP~~l   43 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL   43 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCCC
T ss_pred             CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCCCCCCC
Confidence            579999999999999999999999999999999999999976

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.75  E-value=5.5e-19  Score=129.93  Aligned_cols=63  Identities=75%  Similarity=1.345  Sum_probs=54.9

Q ss_pred             CCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCCCCCCccccc----CCCCCCcccc
Q psy12567         77 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDR----GNFNCYERST  139 (142)
Q Consensus        77 ~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~~k~~~~~~R----~~~n~~~~~~  139 (142)
                      .+++|+||++++||+||++++|++||||||||+++|+++||+.+++++....+    ...||.+.+|
T Consensus         4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~t   70 (115)
T 4hc9_A            4 MGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTT   70 (115)
T ss_dssp             --CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCC
T ss_pred             CCCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCc
Confidence            46899999999999999999999999999999999999999998888776643    4488888765

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.74  E-value=9.8e-20  Score=124.21  Aligned_cols=59  Identities=24%  Similarity=0.472  Sum_probs=45.9

Q ss_pred             CCCccccccCCCCCCcccc--CCCCCcccchhhhhHHhcCCCCCCCCCCCCcccc-cCCCCCC
Q psy12567         76 TEGRECVNCGAISTPLWRR--DGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFD-RGNFNCY  135 (142)
Q Consensus        76 ~~~~~C~nC~tt~Tp~WRr--~~~G~~lCNaCGly~k~~~~~RP~~~~k~~~~~~-R~~~n~~  135 (142)
                      .....|+||+|++||+||+  ++.| +|||||||||++|+++||+.++++.+..+ +++.|-.
T Consensus         6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~~~~~~~~~~rq~~~~   67 (71)
T 2kae_A            6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAVNKYQKRKLKVQETNG   67 (71)
T ss_dssp             --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHHHHHHHHHTTCC----
T ss_pred             CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCCCCcccchhhhhhhhhccCCCC
Confidence            3468999999999999999  5667 99999999999999999999887665544 3344443

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.49  E-value=6.3e-15  Score=92.76  Aligned_cols=43  Identities=63%  Similarity=1.134  Sum_probs=37.7

Q ss_pred             CCCcccccCCCCCCCCcccCCCCccccccccccccccccccccccc
Q psy12567         18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGYFIMSRFL   63 (142)
Q Consensus        18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~~~~~R~~   63 (142)
                      ++.++|+||+++.||+||++++|.+||||||+|.+.+|   ..||+
T Consensus         2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~---~~RP~   44 (46)
T 1gnf_A            2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNG---QNRPL   44 (46)
T ss_dssp             CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTC---SCCCC
T ss_pred             CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcC---CCCCC
Confidence            46789999999999999999999999999999988777   35554

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.36  E-value=1.9e-13  Score=91.89  Aligned_cols=41  Identities=37%  Similarity=0.630  Sum_probs=36.8

Q ss_pred             cCCCCcccccCCCCCCCCcccCCCCcccccccccccccccc
Q psy12567         16 YFTEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGY   56 (142)
Q Consensus        16 ~~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~   56 (142)
                      +.....+|+||+++.||+||++++|.+||||||+|.+.++.
T Consensus         5 ~~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~   45 (66)
T 4gat_A            5 EQNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV   45 (66)
T ss_dssp             CSSSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence            44678999999999999999999999999999998877664

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.33  E-value=1.4e-13  Score=85.42  Aligned_cols=35  Identities=43%  Similarity=0.817  Sum_probs=32.5

Q ss_pred             cccccCCCCCCCCcccCCCCccccccccccccccc
Q psy12567         21 RECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTG   55 (142)
Q Consensus        21 ~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G   55 (142)
                      .+|++|+++.||+||++++|.+||||||++.+.+|
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~   36 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHG   36 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHS
T ss_pred             CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhC
Confidence            58999999999999999999999999999877766

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.30  E-value=6.4e-13  Score=88.58  Aligned_cols=39  Identities=33%  Similarity=0.715  Sum_probs=34.9

Q ss_pred             CCCcccccCCCCCCCCcccCCCCcccccccccccccccc
Q psy12567         18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGY   56 (142)
Q Consensus        18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~   56 (142)
                      ....+|+||+++.||+||+++.|.+||||||++.+..+.
T Consensus         5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~   43 (63)
T 3dfx_A            5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI   43 (63)
T ss_dssp             CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred             CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence            456799999999999999999999999999998776663

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.14  E-value=6e-12  Score=85.64  Aligned_cols=37  Identities=27%  Similarity=0.525  Sum_probs=31.1

Q ss_pred             CCCcccccCCCCCCCCccc--CCCCccccccccccccccc
Q psy12567         18 TEGRECVNCGAISTPLWRR--DGTGHYLCNARLFSTSFTG   55 (142)
Q Consensus        18 ~~~~~C~nCgt~~TplWr~--~~~g~~lCnacg~~~k~~G   55 (142)
                      ....+|+||+++.||+||+  ++.| +||||||+|.+..+
T Consensus         6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~   44 (71)
T 2kae_A            6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYN   44 (71)
T ss_dssp             --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHH
T ss_pred             CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhC
Confidence            5678999999999999999  5667 99999999877665

>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=91.37  E-value=0.16  Score=36.13  Aligned_cols=91  Identities=20%  Similarity=0.340  Sum_probs=49.7

Q ss_pred             CcccccCCCCCCCCcccCC-CCcccccccccccccccccccccccccC-CCc--------cccccCCCCccccccCCCCC
Q psy12567         20 GRECVNCGAISTPLWRRDG-TGHYLCNARLFSTSFTGYFIMSRFLFAS-LPV--------EDIEYFTEGRECVNCGAIST   89 (142)
Q Consensus        20 ~~~C~nCgt~~TplWr~~~-~g~~lCnacg~~~k~~G~~~~~R~~~~~-~~~--------~~~~~~~~~~~C~nC~tt~T   89 (142)
                      -.-|.+||..-.|.=-.+. .-.+.|..|+|........+.......+ ..+        ...........|.+|+..+.
T Consensus         4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~~~~a   83 (113)
T 3h0g_I            4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQHEA   83 (113)
T ss_dssp             CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSCSEEEECCCCSCSCTTCTTCTTSTTCSSSCBCCSCCSSSCCSCE
T ss_pred             ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCCCeEEEEEEecccccccceeccccccccCCCcccCCCCCCCceE
Confidence            3569999998887421111 1268999999865433211110011110 000        01112234578999998764


Q ss_pred             Ccc----ccCCCCC---cccchhhhhHH
Q psy12567         90 PLW----RRDGTGH---YLCNACGLYHK  110 (142)
Q Consensus        90 p~W----Rr~~~G~---~lCNaCGly~k  110 (142)
                      -.|    |..+++.   +.|-.||-.|+
T Consensus        84 ~~~q~q~rsade~mt~fy~C~~C~~~w~  111 (113)
T 3h0g_I           84 VFYQTHSRRGDTMMTLIYVCVHCGFAFE  111 (113)
T ss_dssp             EEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred             EEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence            433    4555553   67999998765

>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...

Probab=87.75  E-value=0.27  Score=35.36  Aligned_cols=93  Identities=17%  Similarity=0.373  Sum_probs=53.1

Q ss_pred             CcccccCCCCCCCCcccCC-CCcccccccccccccccccccccccccCCC-cc--------ccccCCCCccccccCCCCC
Q psy12567         20 GRECVNCGAISTPLWRRDG-TGHYLCNARLFSTSFTGYFIMSRFLFASLP-VE--------DIEYFTEGRECVNCGAIST   89 (142)
Q Consensus        20 ~~~C~nCgt~~TplWr~~~-~g~~lCnacg~~~k~~G~~~~~R~~~~~~~-~~--------~~~~~~~~~~C~nC~tt~T   89 (142)
                      ..-|..||..-.|.=-..+ .+.+.|..|++................... +.        ..........|..|+-.+.
T Consensus         4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~~~a   83 (122)
T 1twf_I            4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSREN   83 (122)
T ss_dssp             CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECSCSEEEEEESSCCTTSSTTCCTTGGGCTTSCCCCCCCTTTCCCCE
T ss_pred             CCcccccCccCcccccCcCCCCEEECCcCCCeeecCccEEEEEeecccccccccccccccccccccccCCCCCCCCCCEE
Confidence            4579999998887432212 347899999986543321111111111110 00        0112234678999998865


Q ss_pred             Ccc----ccCCCCC---cccchhhhhHHhc
Q psy12567         90 PLW----RRDGTGH---YLCNACGLYHKMN  112 (142)
Q Consensus        90 p~W----Rr~~~G~---~lCNaCGly~k~~  112 (142)
                      -.|    |..++|.   +.|..||-.|+-+
T Consensus        84 ~~~q~q~rsade~~t~fy~C~~C~~~w~~n  113 (122)
T 1twf_I           84 VFFQSQQRRKDTSMVLFFVCLSCSHIFTSD  113 (122)
T ss_dssp             EEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred             EEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence            433    5566663   7999999987754

>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}

Probab=86.15  E-value=0.68  Score=34.07  Aligned_cols=93  Identities=23%  Similarity=0.416  Sum_probs=27.2

Q ss_pred             CCCCcccccCCCCCCCCcccCC---CCcccccccccccccccccccccccccCC-----Ccccc----ccCCCCcccccc
Q psy12567         17 FTEGRECVNCGAISTPLWRRDG---TGHYLCNARLFSTSFTGYFIMSRFLFASL-----PVEDI----EYFTEGRECVNC   84 (142)
Q Consensus        17 ~~~~~~C~nCgt~~TplWr~~~---~g~~lCnacg~~~k~~G~~~~~R~~~~~~-----~~~~~----~~~~~~~~C~nC   84 (142)
                      ....+-|..||..-.|.  .+.   ...+.|..|+|.............++.+.     -+.++    ........|..|
T Consensus        21 ~~~~~FCPeCgNmL~pk--ed~~~~~l~~~CrtCgY~~~~~~~~v~r~~~~~~~~e~~~vv~dv~~dptlp~t~~~CpkC   98 (133)
T 3qt1_I           21 MTTFRFCRDCNNMLYPR--EDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKC   98 (133)
T ss_dssp             -CCCCBCTTTCCBCBCC--BCTTTCCBCCBCSSSCCBCCCSCSEEEECCC------------------------------
T ss_pred             ccCCeeCCCCCCEeeEC--ccCCCceeEEECCCCCCcEEcCCceEEEEEeeccccccceeEeeccccccCCcccCCCCCC
Confidence            35578899999999884  332   22689999998654433211101111100     01111    112335789999


Q ss_pred             CCCCCCcc----ccCCCC---CcccchhhhhHHh
Q psy12567         85 GAISTPLW----RRDGTG---HYLCNACGLYHKM  111 (142)
Q Consensus        85 ~tt~Tp~W----Rr~~~G---~~lCNaCGly~k~  111 (142)
                      +-.+.-.|    |..+++   -++|..||-.|+-
T Consensus        99 g~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e  132 (133)
T 3qt1_I           99 HSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE  132 (133)
T ss_dssp             ----------------------------------
T ss_pred             CCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence            98765433    445555   3789999988763

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=85.17  E-value=0.52  Score=29.87  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=23.9

Q ss_pred             CCccccccCCCCCCccccCCCCCcccchhhhhHH
Q psy12567         77 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHK  110 (142)
Q Consensus        77 ~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k  110 (142)
                      ....|.+|+.++  +-.....|.++|..||+.+.
T Consensus        10 ~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGlVl~   41 (58)
T 1dl6_A           10 PRVTCPNHPDAI--LVEDYRAGDMICPECGLVVG   41 (58)
T ss_dssp             SCCSBTTBSSSC--CEECSSSCCEECTTTCCEEC
T ss_pred             ccccCcCCCCCc--eeEeCCCCeEEeCCCCCEEe
Confidence            345799998765  44445678999999999644

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=84.19  E-value=0.99  Score=28.52  Aligned_cols=31  Identities=16%  Similarity=0.157  Sum_probs=23.1

Q ss_pred             CCCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567         17 FTEGRECVNCGAISTPLWRRDGTGHYLCNARLF   49 (142)
Q Consensus        17 ~~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~   49 (142)
                      +.+...|.+||..+  +-.....|.++|..||+
T Consensus         8 ll~~~~Cp~C~~~~--lv~D~~~ge~vC~~CGl   38 (58)
T 1dl6_A            8 ALPRVTCPNHPDAI--LVEDYRAGDMICPECGL   38 (58)
T ss_dssp             CCSCCSBTTBSSSC--CEECSSSCCEECTTTCC
T ss_pred             ccccccCcCCCCCc--eeEeCCCCeEEeCCCCC
Confidence            34566899998754  55555678999999975

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=82.20  E-value=0.41  Score=35.29  Aligned_cols=29  Identities=21%  Similarity=0.659  Sum_probs=25.4

Q ss_pred             CCCcccccCCCCCCCCcccCCCCccccccc
Q psy12567         18 TEGRECVNCGAISTPLWRRDGTGHYLCNAR   47 (142)
Q Consensus        18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnac   47 (142)
                      .+-..|.+||+.. |.|-.-.-|-++|..|
T Consensus        25 p~N~~CaDCg~~~-P~WaS~n~GvfiC~~C   53 (134)
T 2iqj_A           25 EDNKFCADCQSKG-PRWASWNIGVFICIRC   53 (134)
T ss_dssp             GGGGBCTTTCCBS-CCEEETTTTEEECHHH
T ss_pred             cCCCcCCcCcCCC-CCeEEecCCEEEhHhh
Confidence            4567999999975 9998888899999999

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=81.91  E-value=0.43  Score=35.47  Aligned_cols=30  Identities=23%  Similarity=0.616  Sum_probs=25.8

Q ss_pred             CCCcccccCCCCCCCCcccCCCCcccccccc
Q psy12567         18 TEGRECVNCGAISTPLWRRDGTGHYLCNARL   48 (142)
Q Consensus        18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg   48 (142)
                      ..-..|.+||+.. |.|-.-.-|-++|..|-
T Consensus        34 p~N~~CaDCga~~-P~WaS~n~GvfiC~~Cs   63 (138)
T 2owa_A           34 PENRTCFDCESRN-PTWLSLSFAVFICLNCS   63 (138)
T ss_dssp             GGGGBCTTTCCBS-CCEEETTTTEEECHHHH
T ss_pred             cCCCcCCCCcCCC-CCeEEecCCEEEhHhhh
Confidence            4567999999875 99988888999999993

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=80.74  E-value=0.49  Score=28.58  Aligned_cols=31  Identities=23%  Similarity=0.570  Sum_probs=21.8

Q ss_pred             CccccccCCCCCCccccCCCCCcccchhhhhHH
Q psy12567         78 GRECVNCGAISTPLWRRDGTGHYLCNACGLYHK  110 (142)
Q Consensus        78 ~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k  110 (142)
                      ...|.+|+.+  ++-.....|..+|..||+.+.
T Consensus         5 ~~~CP~C~~~--~l~~d~~~gelvC~~CG~v~~   35 (50)
T 1pft_A            5 QKVCPACESA--ELIYDPERGEIVCAKCGYVIE   35 (50)
T ss_dssp             CCSCTTTSCC--CEEEETTTTEEEESSSCCBCC
T ss_pred             cEeCcCCCCc--ceEEcCCCCeEECcccCCccc
Confidence            4579999774  454444567889999999554

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.40  E-value=0.6  Score=34.69  Aligned_cols=29  Identities=24%  Similarity=0.673  Sum_probs=25.0

Q ss_pred             CCCcccccCCCCCCCCcccCCCCccccccc
Q psy12567         18 TEGRECVNCGAISTPLWRRDGTGHYLCNAR   47 (142)
Q Consensus        18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnac   47 (142)
                      ..-..|.+||+. -|.|-.-.-|-++|..|
T Consensus        27 p~N~~CaDCga~-~P~WaS~n~GvfiC~~C   55 (141)
T 2crr_A           27 EDNKYCADCEAK-GPRWASWNIGVFICIRC   55 (141)
T ss_dssp             GGGSSCSSSCCS-SCCSEETTTTEECCHHH
T ss_pred             ccCCcCCCCCCC-CCCeEEeccCeEEhhhh
Confidence            456799999986 48998888899999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	4e-19
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	1e-11
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	3e-17
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	1e-09
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	3e-16
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	2e-08

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.8 bits (179), Expect = 4e-19
 Identities = 34/39 (87%), Positives = 35/39 (89%)

Query: 77  EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN 115
           E RECVNCGA +TPLWRRD TGHYLCNACGLYHKMNG N
Sbjct: 1   EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 39

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (129), Expect = 1e-11
 Identities = 24/28 (85%), Positives = 25/28 (89%)

Query: 19 EGRECVNCGAISTPLWRRDGTGHYLCNA 46
          E RECVNCGA +TPLWRRD TGHYLCNA
Sbjct: 1  EARECVNCGATATPLWRRDRTGHYLCNA 28

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.9 bits (168), Expect = 3e-17
 Identities = 22/41 (53%), Positives = 28/41 (68%)

Query: 78  GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
           G  C NC   +T LWRR   G  +CNACGLY+K++ +NRPL
Sbjct: 4   GTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPL 44

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.2 bits (117), Expect = 1e-09
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 20 GRECVNCGAISTPLWRRDGTGHYLCNA 46
          G  C NC   +T LWRR   G  +CNA
Sbjct: 4  GTVCSNCQTSTTTLWRRSPMGDPVCNA 30

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 65.6 bits (160), Expect = 3e-16
 Identities = 22/38 (57%), Positives = 28/38 (73%)

Query: 81  CVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPL 118
           C NC   +TPLWRR+  G  LCNACGL+ K++G+ RPL
Sbjct: 3   CTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPL 40

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 45.6 bits (108), Expect = 2e-08
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 23 CVNCGAISTPLWRRDGTGHYLCNA 46
          C NC   +TPLWRR+  G  LCNA
Sbjct: 3  CTNCFTQTTPLWRRNPEGQPLCNA 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.87
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.85
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.81
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.57
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.49
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.43
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	89.85
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	88.67
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	87.98
d1neea2	37	Zinc-binding domain of translation initiation fact	87.4
d1neea2	37	Zinc-binding domain of translation initiation fact	86.56
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	85.32
d2zjrz1	58	Ribosomal protein L32p {Deinococcus radiodurans [T	81.83
d2j0151	59	Ribosomal protein L32p {Thermus thermophilus [TaxI	80.46
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	80.25

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.87  E-value=1.6e-23  Score=128.24  Aligned_cols=41  Identities=54%  Similarity=1.121  Sum_probs=39.8

Q ss_pred             cccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCC
Q psy12567         80 ECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVK  120 (142)
Q Consensus        80 ~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~  120 (142)
                      .|+||++++||+||++++|++|||||||||++|+++||++|
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G~~lCNACGl~~k~~g~~RP~sl   42 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVVRPLSL   42 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSCCCCCC
T ss_pred             cCCCCCCCCCccceeCCCCCCchhhhhHHHHHcCCCCCCCC
Confidence            69999999999999999999999999999999999999986

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.85  E-value=1.4e-22  Score=134.95  Aligned_cols=56  Identities=39%  Similarity=0.817  Sum_probs=50.5

Q ss_pred             CCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCCCCCCCCCCCcccccCCC
Q psy12567         77 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRPLVKQPRRLRFDRGNF  132 (142)
Q Consensus        77 ~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~RP~~~~k~~~~~~R~~~  132 (142)
                      .+.+|+||+|++||+||++++|++|||||||||++|+++||+.|+++.|...++..
T Consensus         3 ~g~~C~nCgt~~Tp~WRr~~~G~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~r~~   58 (66)
T d3gata_           3 AGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKV   58 (66)
T ss_dssp             TTCCCTTTCCCCCSSEEECTTSCEEEHHHHHHHHHHCSCCCGGGCCSSCCCCSCCC
T ss_pred             CCCCCCCCCCCCCcccccCCCCCcccchhHHHHHHhCCcCCccccccccccccCCC
Confidence            46789999999999999999999999999999999999999999888876655543

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=4.4e-21  Score=115.63  Aligned_cols=39  Identities=87%  Similarity=1.661  Sum_probs=36.7

Q ss_pred             CCccccccCCCCCCccccCCCCCcccchhhhhHHhcCCC
Q psy12567         77 EGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMN  115 (142)
Q Consensus        77 ~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~~  115 (142)
                      ++++|+||++++||+||++|+|++|||||||||++||++
T Consensus         1 e~r~C~~Cgtt~Tp~WR~gp~G~~LCNACGl~~r~~G~n   39 (39)
T d1y0ja1           1 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN   39 (39)
T ss_dssp             CCCCCSSSCCCCCSCCEECTTSCEECSSHHHHHHHSCCC
T ss_pred             CcCCCCCCCCCCCcccccCCCCCEeeHHhHHHHHHhCCC
Confidence            467999999999999999999999999999999999975

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.8e-16  Score=95.24  Aligned_cols=38  Identities=66%  Similarity=1.212  Sum_probs=34.7

Q ss_pred             CCcccccCCCCCCCCcccCCCCcccccccccccccccc
Q psy12567         19 EGRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGY   56 (142)
Q Consensus        19 ~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~   56 (142)
                      ++++|+|||++.||+||++++|+.||||||+|.+.+|.
T Consensus         1 e~r~C~~Cgtt~Tp~WR~gp~G~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           1 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCCSSSCCCCCSCCEECTTSCEECSSHHHHHHHSCC
T ss_pred             CcCCCCCCCCCCCcccccCCCCCEeeHHhHHHHHHhCC
Confidence            57899999999999999999999999999998877663

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.49  E-value=1.3e-15  Score=92.70  Aligned_cols=35  Identities=43%  Similarity=0.808  Sum_probs=32.5

Q ss_pred             ccccCCCCCCCCcccCCCCcccccccccccccccc
Q psy12567         22 ECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGY   56 (142)
Q Consensus        22 ~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~   56 (142)
                      .|+|||+++||+||+++.|+.||||||+|.+.+|.
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G~~lCNACGl~~k~~g~   36 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV   36 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred             cCCCCCCCCCccceeCCCCCCchhhhhHHHHHcCC
Confidence            69999999999999999999999999999887763

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.43  E-value=1.2e-14  Score=96.14  Aligned_cols=37  Identities=35%  Similarity=0.656  Sum_probs=33.6

Q ss_pred             CcccccCCCCCCCCcccCCCCcccccccccccccccc
Q psy12567         20 GRECVNCGAISTPLWRRDGTGHYLCNARLFSTSFTGY   56 (142)
Q Consensus        20 ~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~k~~G~   56 (142)
                      +.+|+|||++.||+||+++.|++||||||+|.+.++.
T Consensus         4 g~~C~nCgt~~Tp~WRr~~~G~~lCNACGl~~~~~~~   40 (66)
T d3gata_           4 GTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQV   40 (66)
T ss_dssp             TCCCTTTCCCCCSSEEECTTSCEEEHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCcccccCCCCCcccchhHHHHHHhCC
Confidence            5689999999999999999999999999999876663

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.85  E-value=0.048  Score=32.53  Aligned_cols=29  Identities=24%  Similarity=0.629  Sum_probs=21.0

Q ss_pred             CccccccCCCCCCccccCCCCCcccchhhhh
Q psy12567         78 GRECVNCGAISTPLWRRDGTGHYLCNACGLY  108 (142)
Q Consensus        78 ~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly  108 (142)
                      ...|.+|+.+.  +-.....|.++|..||+.
T Consensus         5 ~~~Cp~Cgs~~--iv~D~~~Ge~vC~~CG~V   33 (50)
T d1pfta_           5 QKVCPACESAE--LIYDPERGEIVCAKCGYV   33 (50)
T ss_dssp             CCSCTTTSCCC--EEEETTTTEEEESSSCCB
T ss_pred             cccCcCCCCCc--EEEECCCCeEecccCCcE
Confidence            56799998654  333456688899999974

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.67  E-value=0.11  Score=31.77  Aligned_cols=31  Identities=26%  Similarity=0.456  Sum_probs=22.3

Q ss_pred             CCCccccccCCCCCCccccCCCCCcccchhhhh
Q psy12567         76 TEGRECVNCGAISTPLWRRDGTGHYLCNACGLY  108 (142)
Q Consensus        76 ~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly  108 (142)
                      .....|.+|+.+.  +--....|.++|..||+.
T Consensus         9 ~~~~~Cp~Cgs~~--ii~D~~~Ge~vC~~CG~V   39 (58)
T d1dl6a_           9 LPRVTCPNHPDAI--LVEDYRAGDMICPECGLV   39 (58)
T ss_dssp             CSCCSBTTBSSSC--CEECSSSCCEECTTTCCE
T ss_pred             ccccCCCCCCCCC--EEEECCCCcEecccCCCE
Confidence            4468899999764  222356788999999984

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.98  E-value=0.12  Score=30.74  Aligned_cols=29  Identities=17%  Similarity=0.431  Sum_probs=20.9

Q ss_pred             CCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567         19 EGRECVNCGAISTPLWRRDGTGHYLCNARLF   49 (142)
Q Consensus        19 ~~~~C~nCgt~~TplWr~~~~g~~lCnacg~   49 (142)
                      ....|.+||+..  +-.....|.++|..||+
T Consensus         4 ~~~~Cp~Cgs~~--iv~D~~~Ge~vC~~CG~   32 (50)
T d1pfta_           4 KQKVCPACESAE--LIYDPERGEIVCAKCGY   32 (50)
T ss_dssp             SCCSCTTTSCCC--EEEETTTTEEEESSSCC
T ss_pred             ccccCcCCCCCc--EEEECCCCeEecccCCc
Confidence            456899998643  33345678999999974

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.40  E-value=0.093  Score=29.68  Aligned_cols=28  Identities=29%  Similarity=0.610  Sum_probs=22.5

Q ss_pred             cccccCCCCCCccccCCCCCcccchhhh
Q psy12567         80 ECVNCGAISTPLWRRDGTGHYLCNACGL  107 (142)
Q Consensus        80 ~C~nC~tt~Tp~WRr~~~G~~lCNaCGl  107 (142)
                      .|..|+..+|-+-+.+..--..|+|||-
T Consensus         3 ~C~~C~spDT~l~ke~R~~~l~C~aCGa   30 (37)
T d1neea2           3 ICHECNRPDTRIIREGRISLLKCEACGA   30 (37)
T ss_dssp             HHTCCSSCSSCCEEETTTTEEECSTTSC
T ss_pred             ECCCCCCCCCEEEEcCCEEEEEeccCCC
Confidence            5899999999998765444468999996

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.56  E-value=0.16  Score=28.69  Aligned_cols=30  Identities=20%  Similarity=0.292  Sum_probs=24.5

Q ss_pred             ccccCCCCCCCCcccCCCCccccccccccc
Q psy12567         22 ECVNCGAISTPLWRRDGTGHYLCNARLFST   51 (142)
Q Consensus        22 ~C~nCgt~~TplWr~~~~g~~lCnacg~~~   51 (142)
                      .|..|++.+|-+-+.+-.--..|+|||-..
T Consensus         3 ~C~~C~spDT~l~ke~R~~~l~C~aCGa~r   32 (37)
T d1neea2           3 ICHECNRPDTRIIREGRISLLKCEACGAKA   32 (37)
T ss_dssp             HHTCCSSCSSCCEEETTTTEEECSTTSCCC
T ss_pred             ECCCCCCCCCEEEEcCCEEEEEeccCCCCc
Confidence            589999999999987766667899997543

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.32  E-value=0.28  Score=29.85  Aligned_cols=30  Identities=17%  Similarity=0.187  Sum_probs=21.5

Q ss_pred             CCCcccccCCCCCCCCcccCCCCccccccccc
Q psy12567         18 TEGRECVNCGAISTPLWRRDGTGHYLCNARLF   49 (142)
Q Consensus        18 ~~~~~C~nCgt~~TplWr~~~~g~~lCnacg~   49 (142)
                      .+...|.+||+..  +-.....|.++|..||+
T Consensus         9 ~~~~~Cp~Cgs~~--ii~D~~~Ge~vC~~CG~   38 (58)
T d1dl6a_           9 LPRVTCPNHPDAI--LVEDYRAGDMICPECGL   38 (58)
T ss_dssp             CSCCSBTTBSSSC--CEECSSSCCEECTTTCC
T ss_pred             ccccCCCCCCCCC--EEEECCCCcEecccCCC
Confidence            4566899998653  33345678999999975

>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Deinococcus radiodurans [TaxId: 1299]

Probab=81.83  E-value=0.24  Score=30.32  Aligned_cols=25  Identities=20%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             CCcccccCCCCCCCCcccCCCCccccccccccc
Q psy12567         19 EGRECVNCGAISTPLWRRDGTGHYLCNARLFST   51 (142)
Q Consensus        19 ~~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~   51 (142)
                      ..-+|.+||...-|        |.+|..||+|.
T Consensus        28 ~l~~C~~CG~~~lp--------HrvC~~CG~Yk   52 (58)
T d2zjrz1          28 NLTECPQCHGKKLS--------HHICPNCGYYD   52 (58)
T ss_dssp             CCEECTTTCCEECT--------TBCCTTTCBSS
T ss_pred             ceeECCCCCCCccc--------eeeCCCCCcCC
Confidence            35589999986665        66999999885

>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L32p
domain: Ribosomal protein L32p
species: Thermus thermophilus [TaxId: 274]

Probab=80.46  E-value=0.39  Score=29.38  Aligned_cols=24  Identities=25%  Similarity=0.563  Sum_probs=19.1

Q ss_pred             CcccccCCCCCCCCcccCCCCccccccccccc
Q psy12567         20 GRECVNCGAISTPLWRRDGTGHYLCNARLFST   51 (142)
Q Consensus        20 ~~~C~nCgt~~TplWr~~~~g~~lCnacg~~~   51 (142)
                      .-+|.+||...-|        |.+|..||+|.
T Consensus        29 l~~C~~CG~~~~p--------HrvC~~CG~Yk   52 (59)
T d2j0151          29 LVPCPECKAMKPP--------HTVCPECGYYA   52 (59)
T ss_dssp             CBCCSSSSSCBCT--------TCBCTTTCCSS
T ss_pred             eeECCCCCCcccc--------eeECCCCCeEC
Confidence            4589999985554        66999999885

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.25  E-value=0.31  Score=33.29  Aligned_cols=47  Identities=28%  Similarity=0.579  Sum_probs=36.6

Q ss_pred             cCCCCccccccCCCCCCccccCCCCCcccchhhhhHHhcCC----CCCCCCC
Q psy12567         74 YFTEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGM----NRPLVKQ  121 (142)
Q Consensus        74 ~~~~~~~C~nC~tt~Tp~WRr~~~G~~lCNaCGly~k~~~~----~RP~~~~  121 (142)
                      ..+....|++|++. -|.|-.-.-|-.||-.|.-..+..|+    .|.+.|.
T Consensus        11 ~~p~N~~CaDC~~~-~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld   61 (122)
T d1dcqa2          11 RMTGNDVCCDCGAP-DPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLD   61 (122)
T ss_dssp             HSTTTTBCTTTCCB-SCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTS
T ss_pred             hCCCCCccCCCCCC-CCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccC
Confidence            34667999999977 58999999999999999877777663    4455443