Psyllid ID: psy12579

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MHLGSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEEccccccccEEEEccccccccEEEEEEccccHHHHccccccccEEEEEccEEcccccHHHHHHHHHHcccEEEEEEEEcccHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHccccccccccEEEEEEcccccccEEEEEEccccccEEEEEEccccHHHHHccccccEEEEEEccEEcccccHHHHHHHHHHcccEEEEEEEEcHHHHHcccHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mhlgspdvrASATAKATVAAFAAseghahprvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvegedHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKqrtarrrqppsq
Flexible Loop (DISEMBL)
mhlgspdvrASATAKATVAAFAAseghahprvveLPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLkqaqrsvklvvrytpkvleememrfdkqrtarrrqppsq
Low Complexity Region (SEG)
MHLGSPDVRasatakatvaafaasEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ
Disordered region (IsUnstruct)
****************************************GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE****GKAVELLKQAQRSVKLVVRYTPKVL*********************
Disordered Region (DISOPRED)
*******************************VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP************************
Disordered Region (DISEMBL)
*********************AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRF**************
Disordered Region (DISPRO)
********************F*****HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTAR*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHLGSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q2KIB6	201	Protein lin-7 homolog B O	yes	N/A	0.949	0.651	0.877	2e-62
Q9HAP6	207	Protein lin-7 homolog B O	yes	N/A	0.949	0.632	0.877	2e-62
Q9Z252	207	Protein lin-7 homolog B O	yes	N/A	0.949	0.632	0.885	3e-62
O88951	207	Protein lin-7 homolog B O	yes	N/A	0.949	0.632	0.885	3e-62
Q9Z250	232	Protein lin-7 homolog A O	no	N/A	0.942	0.560	0.892	4e-54
Q8JZS0	233	Protein lin-7 homolog A O	no	N/A	0.942	0.557	0.892	4e-54
O14910	233	Protein lin-7 homolog A O	no	N/A	0.942	0.557	0.892	4e-54
Q32LM6	233	Protein lin-7 homolog A O	no	N/A	0.942	0.557	0.892	4e-54
Q792I0	197	Protein lin-7 homolog C O	no	N/A	0.942	0.659	0.876	1e-53
Q5RAA5	197	Protein lin-7 homolog C O	no	N/A	0.942	0.659	0.876	1e-53

>sp|Q2KIB6|LIN7B_BOVIN Protein lin-7 homolog B OS=Bos taurus GN=LIN7B PE=2 SV=1

 Score =  236 bits (603), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS ++RA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 65  GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 125 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 185 FEKMRSARRRQ 195

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells. May increase the amplitude of ASIC3 acid-evoked currents by stabilizing the channel at the cell surface.
Bos taurus (taxid: 9913)

>sp|Q9HAP6|LIN7B_HUMAN Protein lin-7 homolog B OS=Homo sapiens GN=LIN7B PE=1 SV=1

 Score =  236 bits (603), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS ++RA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 65  GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 125 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 185 FEKMRSARRRQ 195

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells. May increase the amplitude of ASIC3 acid-evoked currents by stabilizing the channel at the cell surface.

Homo sapiens (taxid: 9606)

>sp|Q9Z252|LIN7B_RAT Protein lin-7 homolog B OS=Rattus norvegicus GN=Lin7b PE=1 SV=1

 Score =  236 bits (602), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/131 (88%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS +VRA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 65  GSAEVRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 125 GGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 185 FEKMRSARRRQ 195

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells. MPP5 via its L27 domain. May increase the amplitude of ASIC3 acid-evoked currents by stabilizing the channel at the cell surface.

Rattus norvegicus (taxid: 10116)

>sp|O88951|LIN7B_MOUSE Protein lin-7 homolog B OS=Mus musculus GN=Lin7b PE=1 SV=2

 Score =  236 bits (602), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/131 (88%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS +VRA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 65  GSAEVRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 125 GGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 185 FEKMRSARRRQ 195

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells. May increase the amplitude of ASIC3 acid-evoked currents by stabilizing the channel at the cell surface.

Mus musculus (taxid: 10090)

>sp|Q9Z250|LIN7A_RAT Protein lin-7 homolog A OS=Rattus norvegicus GN=Lin7a PE=1 SV=2

 Score =  209 bits (532), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 121/130 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           G P+ RA ATAKATVAAFAASEGH+HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP
Sbjct: 80  GCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 139

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVA+RHGGLKRGDQLLSVNGVSVEGE H KAVELLK A+ SVKLVVRYTPKVLEEME R
Sbjct: 140 GGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEMEAR 199

Query: 124 FDKQRTARRR 133
           F+K RTARRR
Sbjct: 200 FEKLRTARRR 209

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells.

Rattus norvegicus (taxid: 10116)

>sp|Q8JZS0|LIN7A_MOUSE Protein lin-7 homolog A OS=Mus musculus GN=Lin7a PE=1 SV=2

 Score =  209 bits (532), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 121/130 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           G P+ RA ATAKATVAAFAASEGH+HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP
Sbjct: 80  GCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 139

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVA+RHGGLKRGDQLLSVNGVSVEGE H KAVELLK A+ SVKLVVRYTPKVLEEME R
Sbjct: 140 GGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEMEAR 199

Query: 124 FDKQRTARRR 133
           F+K RTARRR
Sbjct: 200 FEKLRTARRR 209

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells.

Mus musculus (taxid: 10090)

>sp|O14910|LIN7A_HUMAN Protein lin-7 homolog A OS=Homo sapiens GN=LIN7A PE=1 SV=2

 Score =  209 bits (532), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 121/130 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           G P+ RA ATAKATVAAFAASEGH+HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP
Sbjct: 80  GCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 139

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVA+RHGGLKRGDQLLSVNGVSVEGE H KAVELLK A+ SVKLVVRYTPKVLEEME R
Sbjct: 140 GGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEMEAR 199

Query: 124 FDKQRTARRR 133
           F+K RTARRR
Sbjct: 200 FEKLRTARRR 209

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells.

Homo sapiens (taxid: 9606)

>sp|Q32LM6|LIN7A_BOVIN Protein lin-7 homolog A OS=Bos taurus GN=LIN7A PE=2 SV=1

 Score =  209 bits (532), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 121/130 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           G P+ RA ATAKATVAAFAASEGH+HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP
Sbjct: 80  GCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 139

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVA+RHGGLKRGDQLLSVNGVSVEGE H KAVELLK A+ SVKLVVRYTPKVLEEME R
Sbjct: 140 GGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEMEAR 199

Query: 124 FDKQRTARRR 133
           F+K RTARRR
Sbjct: 200 FEKLRTARRR 209

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells.

Bos taurus (taxid: 9913)

>sp|Q792I0|LIN7C_RAT Protein lin-7 homolog C OS=Rattus norvegicus GN=Lin7c PE=1 SV=1

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/130 (87%), Positives = 123/130 (94%)

Query: 5   SPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPG 64
           SP+VRA+ATAKATVAAFAASEGH+HPRVVELPKT+EGLGFN+MGGKEQNSPIYISRIIPG
Sbjct: 66  SPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPG 125

Query: 65  GVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRF 124
           G+ADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ  VKLVVRYTPKVLEEME RF
Sbjct: 126 GIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEEMESRF 185

Query: 125 DKQRTARRRQ 134
           +K R+A+RRQ
Sbjct: 186 EKMRSAKRRQ 195

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells.

Rattus norvegicus (taxid: 10116)

>sp|Q5RAA5|LIN7C_PONAB Protein lin-7 homolog C OS=Pongo abelii GN=LIN7C PE=2 SV=1

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 114/130 (87%), Positives = 123/130 (94%)

Query: 5   SPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPG 64
           SP+VRA+ATAKATVAAFAASEGH+HPRVVELPKT+EGLGFN+MGGKEQNSPIYISRIIPG
Sbjct: 66  SPEVRANATAKATVAAFAASEGHSHPRVVELPKTEEGLGFNIMGGKEQNSPIYISRIIPG 125

Query: 65  GVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRF 124
           G+ADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ  VKLVVRYTPKVLEEME RF
Sbjct: 126 GIADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGKVKLVVRYTPKVLEEMESRF 185

Query: 125 DKQRTARRRQ 134
           +K R+A+RRQ
Sbjct: 186 EKMRSAKRRQ 195

Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells. Forms membrane-associated multiprotein complexes that may regulate delivery and recycling of proteins to the correct membrane domains. The tripartite complex composed of LIN7 (LIN7A, LIN7B or LIN7C), CASK and APBA1 may have the potential to couple synaptic vesicle exocytosis to cell adhesion in brain. Ensures the proper localization of GRIN2B (subunit 2B of the NMDA receptor) to neuronal postsynaptic density and may function in localizing synaptic vesicles at synapses where it is recruited by beta-catenin and cadherin. Required to localize Kir2 channels, GABA transporter (SLC6A12) and EGFR/ERBB1, ERBB2, ERBB3 and ERBB4 to the basolateral membrane of epithelial cells.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
355756026	172	hypothetical protein EGM_09963, partial	0.949	0.761	0.877	1e-60
301765007	202	PREDICTED: protein lin-7 homolog B-like	0.949	0.648	0.877	1e-60
346644810	207	protein lin-7 homolog B [Sus scrofa]	0.949	0.632	0.885	1e-60
351703348	196	Lin-7-like protein B [Heterocephalus gla	0.949	0.668	0.877	1e-60
410982446	207	PREDICTED: LOW QUALITY PROTEIN: protein	0.949	0.632	0.877	1e-60
440906394	189	Protein lin-7-like protein B, partial [B	0.949	0.693	0.877	1e-60
114052805	201	protein lin-7 homolog B [Bos taurus] gi|	0.949	0.651	0.877	2e-60
11545920	207	protein lin-7 homolog B [Homo sapiens] g	0.949	0.632	0.877	2e-60
355703761	195	hypothetical protein EGK_10872, partial	0.949	0.671	0.877	2e-60
403299486	265	PREDICTED: protein lin-7 homolog B, part	0.949	0.494	0.877	2e-60

>gi|355756026|gb|EHH59773.1| hypothetical protein EGM_09963, partial [Macaca fascicularis]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS ++RA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 30  GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 89

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 90  GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 149

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 150 FEKMRSARRRQ 160

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301765007|ref|XP_002917958.1| PREDICTED: protein lin-7 homolog B-like [Ailuropoda melanoleuca]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS ++RA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 60  GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 119

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 120 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 179

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 180 FEKMRSARRRQ 190

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|346644810|ref|NP_001231161.1| protein lin-7 homolog B [Sus scrofa]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 116/131 (88%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS +VRA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 65  GSAEVRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 125 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 185 FEKMRSARRRQ 195

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|351703348|gb|EHB06267.1| Lin-7-like protein B [Heterocephalus glaber]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS ++RA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 60  GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 119

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 120 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 179

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 180 FEKMRSARRRQ 190

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410982446|ref|XP_003997568.1| PREDICTED: LOW QUALITY PROTEIN: protein lin-7 homolog B [Felis catus]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS ++RA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 65  GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 125 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 185 FEKMRSARRRQ 195

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|440906394|gb|ELR56663.1| Protein lin-7-like protein B, partial [Bos grunniens mutus]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS ++RA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 53  GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 112

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 113 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 172

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 173 FEKMRSARRRQ 183

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|114052805|ref|NP_001040042.1| protein lin-7 homolog B [Bos taurus] gi|122135995|sp|Q2KIB6.1|LIN7B_BOVIN RecName: Full=Protein lin-7 homolog B; Short=Lin-7B gi|86827445|gb|AAI12699.1| Lin-7 homolog B (C. elegans) [Bos taurus] gi|296477520|tpg|DAA19635.1| TPA: protein lin-7 homolog B [Bos taurus]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS ++RA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 65  GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 125 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 185 FEKMRSARRRQ 195

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|11545920|ref|NP_071448.1| protein lin-7 homolog B [Homo sapiens] gi|302564628|ref|NP_001181578.1| protein lin-7 homolog B [Macaca mulatta] gi|73947126|ref|XP_851922.1| PREDICTED: protein lin-7 homolog B isoform 2 [Canis lupus familiaris] gi|297705441|ref|XP_002829584.1| PREDICTED: protein lin-7 homolog B [Pongo abelii] gi|332241269|ref|XP_003269803.1| PREDICTED: protein lin-7 homolog B isoform 1 [Nomascus leucogenys] gi|344270063|ref|XP_003406865.1| PREDICTED: protein lin-7 homolog B-like [Loxodonta africana] gi|348559530|ref|XP_003465569.1| PREDICTED: protein lin-7 homolog B-like [Cavia porcellus] gi|395858378|ref|XP_003801548.1| PREDICTED: protein lin-7 homolog B [Otolemur garnettii] gi|402906265|ref|XP_003915923.1| PREDICTED: protein lin-7 homolog B [Papio anubis] gi|441629232|ref|XP_004089425.1| PREDICTED: protein lin-7 homolog B isoform 2 [Nomascus leucogenys] gi|59798472|sp|Q9HAP6.1|LIN7B_HUMAN RecName: Full=Protein lin-7 homolog B; Short=Lin-7B; Short=hLin7B; AltName: Full=Mammalian lin-seven protein 2; Short=MALS-2; AltName: Full=Vertebrate lin-7 homolog 2; Short=Veli-2; Short=hVeli2 gi|11321325|gb|AAG34117.1|AF311862_1 Lin-7b [Homo sapiens] gi|20381193|gb|AAH27618.1| Lin-7 homolog B (C. elegans) [Homo sapiens] gi|37182607|gb|AAQ89104.1| LIN-7B [Homo sapiens] gi|119572840|gb|EAW52455.1| lin-7 homolog B (C. elegans), isoform CRA_b [Homo sapiens] gi|261860676|dbj|BAI46860.1| lin-7 homolog B [synthetic construct] gi|380785489|gb|AFE64620.1| protein lin-7 homolog B [Macaca mulatta] gi|410206860|gb|JAA00649.1| lin-7 homolog B [Pan troglodytes] gi|410287604|gb|JAA22402.1| lin-7 homolog B [Pan troglodytes] gi|410328365|gb|JAA33129.1| lin-7 homolog B [Pan troglodytes]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS ++RA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 65  GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 125 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 185 FEKMRSARRRQ 195

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355703761|gb|EHH30252.1| hypothetical protein EGK_10872, partial [Macaca mulatta]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS ++RA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 53  GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 112

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 113 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 172

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 173 FEKMRSARRRQ 183

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403299486|ref|XP_003940515.1| PREDICTED: protein lin-7 homolog B, partial [Saimiri boliviensis boliviensis]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/131 (87%), Positives = 122/131 (93%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
           GS ++RA ATAKATVAAF ASEGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct: 123 GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 182

Query: 64  GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
           GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct: 183 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 242

Query: 124 FDKQRTARRRQ 134
           F+K R+ARRRQ
Sbjct: 243 FEKMRSARRRQ 253

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
FB|FBgn0039269	246	veli "veli" [Drosophila melano	0.681	0.382	0.936	2.6e-51
UNIPROTKB|F1RIN6	207	LIN7B "Uncharacterized protein	0.949	0.632	0.786	6.5e-51
UNIPROTKB|Q2KIB6	201	LIN7B "Protein lin-7 homolog B	0.949	0.651	0.778	8.3e-51
UNIPROTKB|E2RT69	298	LIN7B "Uncharacterized protein	0.949	0.439	0.778	8.3e-51
UNIPROTKB|Q9HAP6	207	LIN7B "Protein lin-7 homolog B	0.949	0.632	0.778	8.3e-51
MGI|MGI:1330858	207	Lin7b "lin-7 homolog B (C. ele	0.949	0.632	0.786	8.3e-51
RGD|620730	207	Lin7b "lin-7 homolog b (C. ele	0.949	0.632	0.786	8.3e-51
UNIPROTKB|F1NSL3	204	LIN7A "Uncharacterized protein	0.949	0.642	0.786	3.6e-50
UNIPROTKB|Q32LM6	233	LIN7A "Protein lin-7 homolog A	0.949	0.562	0.786	3.6e-50
UNIPROTKB|F1PLC3	206	LIN7A "Uncharacterized protein	0.949	0.635	0.786	3.6e-50

FB|FBgn0039269 veli "veli" [Drosophila melanogaster (taxid:7227)]

 Score = 440 (159.9 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
 Identities = 88/94 (93%), Positives = 89/94 (94%)

Query:    41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
             GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE+H KAVELLK
Sbjct:   153 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGENHEKAVELLK 212

Query:   101 QAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQ 134
             QA  SVKLVVRYTPKVLEEMEMRFDKQR  RRRQ
Sbjct:   213 QAVGSVKLVVRYTPKVLEEMEMRFDKQRNTRRRQ 246

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0035003 "subapical complex" evidence=IDA

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

UNIPROTKB|F1RIN6 LIN7B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 103/131 (78%), Positives = 109/131 (83%)

Query:     4 GSPDVRXXXXXXXXXXXXXXXEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
             GS +VR               EGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct:    65 GSAEVRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query:    64 GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
             GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct:   125 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query:   124 FDKQRTARRRQ 134
             F+K R+ARRRQ
Sbjct:   185 FEKMRSARRRQ 195

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q2KIB6 LIN7B "Protein lin-7 homolog B" [Bos taurus (taxid:9913)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 102/131 (77%), Positives = 109/131 (83%)

Query:     4 GSPDVRXXXXXXXXXXXXXXXEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
             GS ++R               EGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct:    65 GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query:    64 GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
             GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct:   125 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query:   124 FDKQRTARRRQ 134
             F+K R+ARRRQ
Sbjct:   185 FEKMRSARRRQ 195

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

UNIPROTKB|E2RT69 LIN7B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 102/131 (77%), Positives = 109/131 (83%)

Query:     4 GSPDVRXXXXXXXXXXXXXXXEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
             GS ++R               EGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct:   156 GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 215

Query:    64 GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
             GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct:   216 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 275

Query:   124 FDKQRTARRRQ 134
             F+K R+ARRRQ
Sbjct:   276 FEKMRSARRRQ 286

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q9HAP6 LIN7B "Protein lin-7 homolog B" [Homo sapiens (taxid:9606)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 102/131 (77%), Positives = 109/131 (83%)

Query:     4 GSPDVRXXXXXXXXXXXXXXXEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
             GS ++R               EGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct:    65 GSAEIRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query:    64 GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
             GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct:   125 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query:   124 FDKQRTARRRQ 134
             F+K R+ARRRQ
Sbjct:   185 FEKMRSARRRQ 195

GO:0006887 "exocytosis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IPI

MGI|MGI:1330858 Lin7b "lin-7 homolog B (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 103/131 (78%), Positives = 109/131 (83%)

Query:     4 GSPDVRXXXXXXXXXXXXXXXEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
             GS +VR               EGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct:    65 GSAEVRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query:    64 GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
             GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct:   125 GGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query:   124 FDKQRTARRRQ 134
             F+K R+ARRRQ
Sbjct:   185 FEKMRSARRRQ 195

GO:0005886 "plasma membrane" evidence=IDA

GO:0005911 "cell-cell junction" evidence=ISO

GO:0005923 "tight junction" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IGI

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0045202 "synapse" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=IEA

RGD|620730 Lin7b "lin-7 homolog b (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 103/131 (78%), Positives = 109/131 (83%)

Query:     4 GSPDVRXXXXXXXXXXXXXXXEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
             GS +VR               EGHAHPRVVELPKTDEGLGFN+MGGKEQNSPIYISR+IP
Sbjct:    65 GSAEVRAHATAKATVAAFTASEGHAHPRVVELPKTDEGLGFNIMGGKEQNSPIYISRVIP 124

Query:    64 GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
             GGVADRHGGLKRGDQLLSVNGVSVEGE H KAVELLK AQ SVKLVVRYTP+VLEEME R
Sbjct:   125 GGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAQGSVKLVVRYTPRVLEEMEAR 184

Query:   124 FDKQRTARRRQ 134
             F+K R+ARRRQ
Sbjct:   185 FEKMRSARRRQ 195

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=ISO

GO:0005911 "cell-cell junction" evidence=IDA

GO:0005923 "tight junction" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0007043 "cell-cell junction assembly" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=IEA;ISO

GO:0014069 "postsynaptic density" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

GO:0045202 "synapse" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1NSL3 LIN7A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 103/131 (78%), Positives = 108/131 (82%)

Query:     4 GSPDVRXXXXXXXXXXXXXXXEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
             G P+ R               EGH+HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP
Sbjct:    62 GCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 121

Query:    64 GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
             GGVA+RHGGLKRGDQLLSVNGVSVEGE H KAVELLK A+ SVKLVVRYTPKVLEEME R
Sbjct:   122 GGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEMEAR 181

Query:   124 FDKQRTARRRQ 134
             F+K RTARRRQ
Sbjct:   182 FEKLRTARRRQ 192

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0048489 "synaptic vesicle transport" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0097016 "L27 domain binding" evidence=IEA

UNIPROTKB|Q32LM6 LIN7A "Protein lin-7 homolog A" [Bos taurus (taxid:9913)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 103/131 (78%), Positives = 108/131 (82%)

Query:     4 GSPDVRXXXXXXXXXXXXXXXEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
             G P+ R               EGH+HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP
Sbjct:    80 GCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 139

Query:    64 GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
             GGVA+RHGGLKRGDQLLSVNGVSVEGE H KAVELLK A+ SVKLVVRYTPKVLEEME R
Sbjct:   140 GGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEMEAR 199

Query:   124 FDKQRTARRRQ 134
             F+K RTARRRQ
Sbjct:   200 FEKLRTARRRQ 210

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0097016 "L27 domain binding" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0048489 "synaptic vesicle transport" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

UNIPROTKB|F1PLC3 LIN7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 103/131 (78%), Positives = 108/131 (82%)

Query:     4 GSPDVRXXXXXXXXXXXXXXXEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 63
             G P+ R               EGH+HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP
Sbjct:    53 GCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIP 112

Query:    64 GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
             GGVA+RHGGLKRGDQLLSVNGVSVEGE H KAVELLK A+ SVKLVVRYTPKVLEEME R
Sbjct:   113 GGVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEMEAR 172

Query:   124 FDKQRTARRRQ 134
             F+K RTARRRQ
Sbjct:   173 FEKLRTARRRQ 183

GO:0097016 "L27 domain binding" evidence=IEA

GO:0048839 "inner ear development" evidence=IEA

GO:0048489 "synaptic vesicle transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0007269 "neurotransmitter secretion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9NUP9	LIN7C_HUMAN	No assigned EC number	0.8769	0.9420	0.6598	no	N/A
Q5F425	LIN7C_CHICK	No assigned EC number	0.8769	0.9420	0.6598	no	N/A
Q9Z252	LIN7B_RAT	No assigned EC number	0.8854	0.9492	0.6328	yes	N/A
Q2KIB6	LIN7B_BOVIN	No assigned EC number	0.8778	0.9492	0.6517	yes	N/A
Q5RAA5	LIN7C_PONAB	No assigned EC number	0.8769	0.9420	0.6598	no	N/A
Q0P5F3	LIN7C_BOVIN	No assigned EC number	0.8769	0.9420	0.6598	no	N/A
Q792I0	LIN7C_RAT	No assigned EC number	0.8769	0.9420	0.6598	no	N/A
O88951	LIN7B_MOUSE	No assigned EC number	0.8854	0.9492	0.6328	yes	N/A
O88952	LIN7C_MOUSE	No assigned EC number	0.8769	0.9420	0.6598	no	N/A
Q9HAP6	LIN7B_HUMAN	No assigned EC number	0.8778	0.9492	0.6328	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	138
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	2e-29
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	2e-25
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	3e-17
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	8e-13
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	3e-07
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	8e-05
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	3e-04
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	9e-04
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	0.003

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score =  101 bits (255), Expect = 2e-29
 Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 30  PRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
            R V L K    GLGF++ GGK+    I++SR+ PGG A+R GGL+ GD++L VNGVSVE
Sbjct: 1   VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAER-GGLRVGDRILEVNGVSVE 59

Query: 89  GEDHGKAVELLKQAQRSVKLVVR 111
           G  H +AVELLK +   V L VR
Sbjct: 60  GLTHEEAVELLKNSGDEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 92.1 bits (229), Expect = 2e-25
 Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 1/83 (1%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+VEL K   GLGF+++GGK++   + +S ++PG  A +  GL+ GD +L VNG SVEG
Sbjct: 2   PRLVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKA-GLRVGDVILEVNGTSVEG 60

Query: 90  EDHGKAVELLKQAQRSVKLVVRY 112
             H +AV+LLK+A   V L V  
Sbjct: 61  LTHLEAVDLLKKAGGKVTLTVLR 83

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 70.7 bits (174), Expect = 3e-17
 Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)

Query: 32  VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
           V        GLGF+++GG + +  I++S ++PGG A+  GGL+ GD++LS+NG  +E   
Sbjct: 2   VTLEKSGRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEA-GGLQEGDRILSINGQDLENLS 60

Query: 92  HGKAVELLKQAQRSVKLVVR 111
           H +AV  LK +   V L + 
Sbjct: 61  HDEAVLALKGSGGEVTLTIL 80

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 59.2 bits (144), Expect = 8e-13
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 41  GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
           GLGF++         + +  + PG  A+R  GL+ GD +L+VNG  V+        ELLK
Sbjct: 2   GLGFSI--RGGTEGGVVVLSVEPGSPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLK 58

Query: 101 QAQR-SVKLVVR 111
           +     V L VR
Sbjct: 59  KEVGEKVTLTVR 70

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 44.9 bits (107), Expect = 3e-07
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 40  EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
            G+G  +   K  +  + I+ ++PG  A +  G+K GD +++++G  V+G      V+LL
Sbjct: 2   GGIGLEL---KYDDGGLVITSVLPGSPAAK-AGIKAGDIIVAIDGEPVDGLSLEDVVKLL 57

Query: 100 K-QAQRSVKLVV-RYTPKVLEEMEMR 123
           + +A   V+L + R   +  E    R
Sbjct: 58  RGKAGTKVRLTLKRGDGEPREVTLTR 83

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 40  EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
            G+G  +    E    + +   I G  A +  G+K GD ++ ++G SV G    +AV+L+
Sbjct: 100 GGIGIEL--QMEDIGGVKVVSPIDGSPAAK-AGIKPGDVIIKIDGKSVGGVSLDEAVKLI 156

Query: 100 KQAQ-RSVKLVVR 111
           +      V L + 
Sbjct: 157 RGKPGTKVTLTIL 169

Length = 406

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 48  GGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK 107
            G +    + ++ + PG  A +  GLK GD +L+VNG  V+     +      +    V 
Sbjct: 18  LGLKDTKGVLVASVDPGSPAAK-AGLKPGDVILAVNGKPVKSVADLRRALAELKPGDKVT 76

Query: 108 LVVR 111
           L V 
Sbjct: 77  LTVL 80

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 35.7 bits (83), Expect = 9e-04
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 41  GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG-EDHGKAVELL 99
            LGF   G         I  ++PG  A + G LK GD++L++NG  ++  ED   AV+  
Sbjct: 2   ILGFVPGG---PPIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSWEDLVDAVQEN 57

Query: 100 KQAQRSVKLVVR 111
                 + L V 
Sbjct: 58  PGK--PLTLTVE 67

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 57  YISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
            +++++PG  A++  GLK GD + SVNG  + 
Sbjct: 260 LVAQVLPGSPAEK-AGLKAGDVITSVNGKPIS 290

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
KOG3550|consensus	207		99.95
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.67
KOG3209|consensus	984		99.5
KOG3549|consensus	505		99.45
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.43
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	99.39
KOG3209|consensus	984		99.3
KOG3551|consensus	506		99.27
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.26
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.09
KOG1892|consensus	1629		99.04
KOG3651|consensus	429		99.03
KOG3580|consensus	1027		99.03
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.01
KOG3553|consensus	124		98.97
KOG3571|consensus	626		98.87
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.81
KOG3552|consensus	1298		98.81
KOG3542|consensus	1283		98.81
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.77
KOG3938|consensus	334		98.75
KOG3606|consensus	358		98.75
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.74
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.66
KOG3580|consensus	1027		98.64
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.62
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.59
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.49
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.49
KOG0609|consensus	542		98.44
PRK11186	667	carboxy-terminal protease; Provisional	98.44
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.36
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.3
PRK10139	455	serine endoprotease; Provisional	98.23
PRK10942	473	serine endoprotease; Provisional	98.19
PRK10139	455	serine endoprotease; Provisional	98.17
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.15
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.14
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.12
KOG3605|consensus	829		98.11
PRK10898	353	serine endoprotease; Provisional	98.05
KOG3605|consensus	829		98.05
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.04
PRK10942	473	serine endoprotease; Provisional	98.03
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.02
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.86
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.8
KOG0606|consensus	1205		97.73
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.61
KOG3532|consensus	1051		97.59
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	97.58
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.58
KOG1738|consensus	638		97.31
KOG3129|consensus	231		97.19
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	97.11
KOG4407|consensus	1973		96.86
COG3975	558	Predicted protease with the C-terminal PDZ domain	96.8
PRK09681	276	putative type II secretion protein GspC; Provision	96.8
COG3031	275	PulC Type II secretory pathway, component PulC [In	96.27
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	96.26
KOG1421|consensus	955		96.14
KOG1320|consensus	473		95.92
KOG4371|consensus	1332		93.31
PF12812	78	PDZ_1: PDZ-like domain	93.15
KOG3834|consensus	462		88.59
KOG2921|consensus	484		88.53
KOG4371|consensus	1332		85.61
KOG3834|consensus	462		85.34
COG0750	375	Predicted membrane-associated Zn-dependent proteas	83.29
PF11874	183	DUF3394: Domain of unknown function (DUF3394); Int	80.44

>KOG3550|consensus

Probab=99.95  E-value=5.5e-27  Score=152.32  Aligned_cols=134  Identities=90%  Similarity=1.266  Sum_probs=129.9

Q ss_pred             CCCCCCCCChhhhHHHhhhhccCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEE
Q psy12579          3 LGSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV   82 (138)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~i   82 (138)
                      ++++++++.+..++++.+|.+++.+.-||.|+|.+...++||.+.||++.+.++||+.+.|||.|++-|||+.||++++|
T Consensus        64 ~~s~eira~atakatvaafaaseghahprvvelpktdeglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsv  143 (207)
T KOG3550|consen   64 DGSPEIRAAATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV  143 (207)
T ss_pred             CCChHHhhhhhhHHHHHHHHHhccCCCCceeecCccccccceeeccCcccCCceEEEeecCCccccccCcccccceeEee
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCchHHHHHHHhhccccccCCCCC
Q psy12579         83 NGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPP  136 (138)
Q Consensus        83 ng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~  136 (138)
                      ||.++.+..|+.+..+++.+.+++.|.|++-|..+++++.++.+++++.++|+.
T Consensus       144 ngvsvege~hekavellkaa~gsvklvvrytpkvleeme~rfek~r~~rrrqq~  197 (207)
T KOG3550|consen  144 NGVSVEGEHHEKAVELLKAAVGSVKLVVRYTPKVLEEMEARFEKQRSARRRQQS  197 (207)
T ss_pred             cceeecchhhHHHHHHHHHhcCcEEEEEecChHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999999999999988753

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.67  E-value=1.4e-15  Score=91.31  Aligned_cols=79  Identities=42%  Similarity=0.753  Sum_probs=70.5

Q ss_pred             EEEEec-CCCCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579         32 VVELPK-TDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV  109 (138)
Q Consensus        32 ~v~l~~-~~~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~  109 (138)
                      +|++.+ ...+|||++.++.+.. .+++|..+.++|+|+++ ||+.||.|++|||.++.++++.++..+++.++..+.|+
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~-gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~   79 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERA-GLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT   79 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHH-TSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhc-ccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence            467777 6688999999876543 57999999999999999 59999999999999999999999999999998899888


Q ss_pred             EE
Q psy12579        110 VR  111 (138)
Q Consensus       110 v~  111 (138)
                      |+
T Consensus        80 V~   81 (81)
T PF00595_consen   80 VQ   81 (81)
T ss_dssp             EE
T ss_pred             EC
Confidence            74

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3209|consensus

Probab=99.50  E-value=1.4e-13  Score=108.22  Aligned_cols=89  Identities=36%  Similarity=0.628  Sum_probs=80.6

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ++...-.+|+|.++..||||+|+||.++.-++||..+.++|||.++|.+++||+|++|||....+++|+.|..+|++-+.
T Consensus       894 ~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~  973 (984)
T KOG3209|consen  894 SQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGR  973 (984)
T ss_pred             cccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCe
Confidence            34455678999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             eEEEEEEEC
Q psy12579        105 SVKLVVRYT  113 (138)
Q Consensus       105 ~v~l~v~r~  113 (138)
                      .+.+.+++.
T Consensus       974 ~vll~Lr~g  982 (984)
T KOG3209|consen  974 RVLLLLRRG  982 (984)
T ss_pred             EEEEEeccC
Confidence            777766653

>KOG3549|consensus

Probab=99.45  E-value=2.8e-13  Score=99.25  Aligned_cols=90  Identities=34%  Similarity=0.542  Sum_probs=83.1

Q ss_pred             cCCCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         24 SEGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      ++..+..|+|++.+.. +|||++|.||.+..-+++|+++.++-.|+..|.|-+||-|++|||+.+..++|++++++++++
T Consensus        49 ~p~~s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA  128 (505)
T KOG3549|consen   49 PPMESKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA  128 (505)
T ss_pred             CCccCCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc
Confidence            4455788999999977 789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEC
Q psy12579        103 QRSVKLVVRYT  113 (138)
Q Consensus       103 ~~~v~l~v~r~  113 (138)
                      |+.++++|...
T Consensus       129 GdeVtlTV~~l  139 (505)
T KOG3549|consen  129 GDEVTLTVKHL  139 (505)
T ss_pred             CCEEEEEeHhh
Confidence            99999999643

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.43  E-value=6.4e-12  Score=75.18  Aligned_cols=79  Identities=53%  Similarity=0.861  Sum_probs=67.3

Q ss_pred             EEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579         31 RVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV  109 (138)
Q Consensus        31 ~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~  109 (138)
                      +.+.+.+. ..+|||.+....+...+++|..+.++++|+.+ +|+.||+|++||+.++.++++.++...++.....+.++
T Consensus         2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~-gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~   80 (82)
T cd00992           2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERG-GLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT   80 (82)
T ss_pred             EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhC-CCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence            45777776 57899999876433467999999999999997 99999999999999999889999999999876677666


Q ss_pred             E
Q psy12579        110 V  110 (138)
Q Consensus       110 v  110 (138)
                      +
T Consensus        81 v   81 (82)
T cd00992          81 V   81 (82)
T ss_pred             E
Confidence            5

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=99.39  E-value=2.4e-11  Score=72.89  Aligned_cols=82  Identities=48%  Similarity=0.743  Sum_probs=69.6

Q ss_pred             EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579         31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV  110 (138)
Q Consensus        31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v  110 (138)
                      ..+.+.+....|||.+........+++|..+.++++|+.+ +|++||.|++||+..+.++.+.+...++...+..+.+++
T Consensus         3 ~~~~~~~~~~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~-gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i   81 (85)
T smart00228        3 RLVELEKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKA-GLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTV   81 (85)
T ss_pred             EEEEEEECCCcccEEEECCCCCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence            4567777668899999875432268999999999999999 799999999999999999999888888888777888888


Q ss_pred             EEC
Q psy12579        111 RYT  113 (138)
Q Consensus       111 ~r~  113 (138)
                      .|+
T Consensus        82 ~r~   84 (85)
T smart00228       82 LRG   84 (85)
T ss_pred             EeC
Confidence            875

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3209|consensus

Probab=99.30  E-value=2.2e-11  Score=96.11  Aligned_cols=85  Identities=39%  Similarity=0.768  Sum_probs=77.9

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeE
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSV  106 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v  106 (138)
                      +...|.|.+...||||.|.||.+...+++|..+.+.|+|+.+|.|+.||.|++|+|++|.+.+|.+++.++..+  .+-|
T Consensus       649 k~ldV~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV  728 (984)
T KOG3209|consen  649 KELDVFLRRKESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHV  728 (984)
T ss_pred             cceeEEEEeeccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCce
Confidence            45668899999999999999999999999999999999999999999999999999999999999999999775  4568


Q ss_pred             EEEEEEC
Q psy12579        107 KLVVRYT  113 (138)
Q Consensus       107 ~l~v~r~  113 (138)
                      .|+|+|.
T Consensus       729 ~LtVRRk  735 (984)
T KOG3209|consen  729 NLTVRRK  735 (984)
T ss_pred             EEEEeee
Confidence            8888876

>KOG3551|consensus

Probab=99.27  E-value=1.1e-11  Score=91.95  Aligned_cols=86  Identities=44%  Similarity=0.686  Sum_probs=78.9

Q ss_pred             EEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579         31 RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV  109 (138)
Q Consensus        31 ~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~  109 (138)
                      |.|++.|.. +++|++|.||+++.-++.|+++.+|-+|++.+.|..||.|++|||.++.+.+|+++++.++.+|..+.+.
T Consensus        86 R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~le  165 (506)
T KOG3551|consen   86 RRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLE  165 (506)
T ss_pred             ceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeee
Confidence            778887755 8899999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEECCch
Q psy12579        110 VRYTPKV  116 (138)
Q Consensus       110 v~r~~~~  116 (138)
                      |++--+.
T Consensus       166 vKy~REv  172 (506)
T KOG3551|consen  166 VKYMREV  172 (506)
T ss_pred             eeeehhc
Confidence            8765443

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.26  E-value=1.1e-10  Score=67.74  Aligned_cols=67  Identities=40%  Similarity=0.682  Sum_probs=58.6

Q ss_pred             CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-CeEEEEE
Q psy12579         41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-RSVKLVV  110 (138)
Q Consensus        41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v  110 (138)
                      ++||.+....+  .+++|..+.+++||+.+ +|++||+|++|||.++.++++.++..+++... ..+.|++
T Consensus         2 ~~G~~~~~~~~--~~~~V~~v~~~s~a~~~-gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTE--GGVVVLSVEPGSPAERA-GLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CccEEEecCCC--CCEEEEEeCCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            58999987542  47999999999999997 99999999999999999999999999998864 6777765

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.09  E-value=2.6e-09  Score=64.12  Aligned_cols=72  Identities=29%  Similarity=0.499  Sum_probs=56.7

Q ss_pred             CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579         41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV  116 (138)
Q Consensus        41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~  116 (138)
                      .+|+.+..... ..+++|..|.++|||+.+ ||+.||.|++|||..+.+  ..+....+..  .+..+.+++.|+...
T Consensus         2 ~lGv~~~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~   75 (82)
T PF13180_consen    2 GLGVTVQNLSD-TGGVVVVSVIPGSPAAKA-GLQPGDIILAINGKPVNS--SEDLVNILSKGKPGDTVTLTVLRDGEE   75 (82)
T ss_dssp             E-SEEEEECSC-SSSEEEEEESTTSHHHHT-TS-TTEEEEEETTEESSS--HHHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred             EECeEEEEccC-CCeEEEEEeCCCCcHHHC-CCCCCcEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            46888776432 357999999999999999 999999999999999944  5676777643  478999999998653

...

>KOG1892|consensus

Probab=99.04  E-value=1.8e-09  Score=87.83  Aligned_cols=98  Identities=30%  Similarity=0.508  Sum_probs=83.9

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ++..+|+|++. +|+|++|...+.   ...|+||+.|.+|++|+.+|.|..||+++.|||+.+.+.+.+.+..++-+.|.
T Consensus       932 pei~~vtL~Kn-nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~ 1010 (1629)
T KOG1892|consen  932 PEIITVTLKKN-NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGN 1010 (1629)
T ss_pred             CceEEEEEecc-CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccCC
Confidence            45566788876 899999975432   24589999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEECCchHHHHHHHhhc
Q psy12579        105 SVKLVVRYTPKVLEEMEMRFDK  126 (138)
Q Consensus       105 ~v~l~v~r~~~~~~~~~~~~~~  126 (138)
                      .|.|.|...+-.+..+...+..
T Consensus      1011 vV~leVaKqgAiyhGLatlL~q 1032 (1629)
T KOG1892|consen 1011 VVHLEVAKQGAIYHGLATLLGQ 1032 (1629)
T ss_pred             eEEEehhhhhhHHHHHHHHhcC
Confidence            9999999888777776665543

>KOG3651|consensus

Probab=99.03  E-value=1.5e-09  Score=78.58  Aligned_cols=101  Identities=23%  Similarity=0.447  Sum_probs=81.6

Q ss_pred             cEEEEEecCCC-CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         30 PRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        30 ~~~v~l~~~~~-~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      +.+|++.++.. -+|++|.||...-..+||..|..++||++.|.++.||.|++|||+.+.+.+..++.++|....+.+.+
T Consensus         5 ~~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I   84 (429)
T KOG3651|consen    5 SETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI   84 (429)
T ss_pred             cCcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence            45688888774 58999999876555689999999999999999999999999999999999999999999999888888


Q ss_pred             EEE---ECCchHHHHHHHhhccccc
Q psy12579        109 VVR---YTPKVLEEMEMRFDKQRTA  130 (138)
Q Consensus       109 ~v~---r~~~~~~~~~~~~~~~~~~  130 (138)
                      .+.   -+|..-+.+..-+++.+|.
T Consensus        85 hyNKL~adp~qGktLDI~lKKvKHr  109 (429)
T KOG3651|consen   85 HYNKLEADPTQGKTLDILLKKVKHR  109 (429)
T ss_pred             EehhcccCcccCccHHHHHHHHHHH
Confidence            774   3444444444444444443

>KOG3580|consensus

Probab=99.03  E-value=1.1e-09  Score=85.65  Aligned_cols=84  Identities=33%  Similarity=0.584  Sum_probs=74.6

Q ss_pred             CcEEEEEecCC-CCcCeEEeccCCCCC------CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         29 HPRVVELPKTD-EGLGFNVMGGKEQNS------PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        29 ~~~~v~l~~~~-~~~G~~l~~~~~~~~------~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      +..+++|.++. .|||+.|.||.+...      -++|+.|.+||||+  |.|+.+|.|+.|||..+.+..|.-+++.|+.
T Consensus         8 EQhTvTL~kdp~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAe--G~LQenDrvvMVNGvsMenv~haFAvQqLrk   85 (1027)
T KOG3580|consen    8 EQHTVTLQKDPKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAE--GLLQENDRVVMVNGVSMENVLHAFAVQQLRK   85 (1027)
T ss_pred             hhheeeeecCCCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcc--cccccCCeEEEEcCcchhhhHHHHHHHHHHh
Confidence            34679999987 689999999987643      38899999999999  6799999999999999999999999999999


Q ss_pred             CCCeEEEEEEECC
Q psy12579        102 AQRSVKLVVRYTP  114 (138)
Q Consensus       102 ~~~~v~l~v~r~~  114 (138)
                      ++....++|+|.-
T Consensus        86 sgK~A~ItvkRpr   98 (1027)
T KOG3580|consen   86 SGKVAAITVKRPR   98 (1027)
T ss_pred             hccceeEEecccc
Confidence            9999999998764

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.01  E-value=4.7e-09  Score=63.13  Aligned_cols=70  Identities=27%  Similarity=0.564  Sum_probs=59.1

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEEC
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYT  113 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~  113 (138)
                      .++|+.+...   ..+++|..+.++++|+.+ +|++||+|++|||..+.++++.++..++.. .+..+.+++.|+
T Consensus         2 ~~lG~~~~~~---~~~~~V~~v~~~s~a~~~-gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           2 GGIGLELKYD---DGGLVITSVLPGSPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             eEEEEEEEEc---CCeEEEEEecCCCCHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            3578887642   356999999999999998 999999999999999999877888888765 467889999887

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3553|consensus

Probab=98.97  E-value=1.1e-09  Score=66.82  Aligned_cols=69  Identities=32%  Similarity=0.578  Sum_probs=57.6

Q ss_pred             cCeEEeccCCC----------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE
Q psy12579         42 LGFNVMGGKEQ----------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR  111 (138)
Q Consensus        42 ~G~~l~~~~~~----------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~  111 (138)
                      +||.|.||-+.          +.|+||..|.+||||+.+ ||+.+|.|+++||-.+.-++|+.+.+.++.. ..+.+.|.
T Consensus        37 ~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~A-GLrihDKIlQvNG~DfTMvTHd~Avk~i~k~-~vl~mLVa  114 (124)
T KOG3553|consen   37 LGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIA-GLRIHDKILQVNGWDFTMVTHDQAVKRITKE-EVLRMLVA  114 (124)
T ss_pred             EEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhh-cceecceEEEecCceeEEEEhHHHHHHhhHh-HHHHHHHH
Confidence            79999887653          457999999999999999 9999999999999999889999999998763 23444443


Q ss_pred             E
Q psy12579        112 Y  112 (138)
Q Consensus       112 r  112 (138)
                      |
T Consensus       115 R  115 (124)
T KOG3553|consen  115 R  115 (124)
T ss_pred             h
Confidence            3

>KOG3571|consensus

Probab=98.87  E-value=1.2e-08  Score=78.23  Aligned_cols=86  Identities=30%  Similarity=0.478  Sum_probs=71.1

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccC--CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGK--EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--  102 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~--~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--  102 (138)
                      ....+|.|--.. ..||+++.|..  ..+.++||..+.+||+.+++|.+.+||.|++||.+++.+++.++|+..|+..  
T Consensus       248 lnIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~  327 (626)
T KOG3571|consen  248 LNIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVS  327 (626)
T ss_pred             eeEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhc
Confidence            355566665555 56999999843  2367899999999999999999999999999999999999999999999885  


Q ss_pred             -CCeEEEEEEEC
Q psy12579        103 -QRSVKLVVRYT  113 (138)
Q Consensus       103 -~~~v~l~v~r~  113 (138)
                       ...+.|+|...
T Consensus       328 ~~gPi~ltvAk~  339 (626)
T KOG3571|consen  328 RPGPIKLTVAKC  339 (626)
T ss_pred             cCCCeEEEEeec
Confidence             45688888544

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.81  E-value=8.4e-08  Score=57.14  Aligned_cols=60  Identities=23%  Similarity=0.326  Sum_probs=51.0

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~  115 (138)
                      ..|++|..|.++++|+.+ ||+.||.|++|||..+.+  ..++...+...  +..+.+++.|+..
T Consensus         9 ~~Gv~V~~V~~~spa~~a-GL~~GDiI~~Ing~~v~~--~~d~~~~l~~~~~g~~v~l~v~r~g~   70 (79)
T cd00991           9 VAGVVIVGVIVGSPAENA-VLHTGDVIYSINGTPITT--LEDFMEALKPTKPGEVITVTVLPSTT   70 (79)
T ss_pred             CCcEEEEEECCCChHHhc-CCCCCCEEEEECCEEcCC--HHHHHHHHhcCCCCCEEEEEEEECCE
Confidence            457999999999999998 999999999999999964  57777777653  6788999988764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3552|consensus

Probab=98.81  E-value=1e-08  Score=83.29  Aligned_cols=91  Identities=30%  Similarity=0.532  Sum_probs=73.1

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      ++|.|.+.+.. .+||-+..|    .+|+|..|.+|||+.  |.|.+||+|++|||.++.+..++.++.+++.+...+.|
T Consensus        55 ~pr~vq~~r~~-~lGFgfvag----rPviVr~VT~GGps~--GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~l  127 (1298)
T KOG3552|consen   55 EPRQVQLQRNA-SLGFGFVAG----RPVIVRFVTEGGPSI--GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNL  127 (1298)
T ss_pred             cchhhhhhccc-cccceeecC----CceEEEEecCCCCcc--ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcce
Confidence            47778887654 344444443    579999999999999  67999999999999999999999999999999999999


Q ss_pred             EEEEC---CchHHHHHHHhhc
Q psy12579        109 VVRYT---PKVLEEMEMRFDK  126 (138)
Q Consensus       109 ~v~r~---~~~~~~~~~~~~~  126 (138)
                      +|.++   |...+.+..+.++
T Consensus       128 tV~qPc~~p~pKStflSa~Kr  148 (1298)
T KOG3552|consen  128 TVCQPCVLPGPKSTFLSAGKR  148 (1298)
T ss_pred             EEeccccCCCchhhhhhhhhh
Confidence            99884   5555555555443

>KOG3542|consensus

Probab=98.81  E-value=1.7e-08  Score=80.04  Aligned_cols=102  Identities=36%  Similarity=0.601  Sum_probs=88.8

Q ss_pred             CCCCCcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         25 EGHAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      ....++|.|.|.+..  .++-|.+.||.+.+.++||..|.+|+.|++. |++.||+|++|||.+..+.+...+..++++.
T Consensus       531 aaKAK~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~-GlKRgDqilEVNgQnfenis~~KA~eiLrnn  609 (1283)
T KOG3542|consen  531 AAKAKPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAARE-GLKRGDQILEVNGQNFENISAKKAEEILRNN  609 (1283)
T ss_pred             hhcccceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHh-hhhhhhhhhhccccchhhhhHHHHHHHhcCC
Confidence            344688999998844  6799999999998899999999999999999 9999999999999999999999999998765


Q ss_pred             CCeEEEEEEECCchHHHHHHHhhccc
Q psy12579        103 QRSVKLVVRYTPKVLEEMEMRFDKQR  128 (138)
Q Consensus       103 ~~~v~l~v~r~~~~~~~~~~~~~~~~  128 (138)
                       -.+.|++..+-..++++.-++...+
T Consensus       610 -thLtltvKtNvfvfKEll~r~e~eK  634 (1283)
T KOG3542|consen  610 -THLTLTVKTNVFVFKELLGRIEHEK  634 (1283)
T ss_pred             -ceEEEEEecceeeHHHHHhhhhhhc
Confidence             4678888888888888887776654

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.77  E-value=1.4e-07  Score=55.87  Aligned_cols=59  Identities=25%  Similarity=0.509  Sum_probs=49.4

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~  115 (138)
                      .+++|..+.++++|+.+ ||+.||.|++|||.++.+  +.++...+... +..+.+++.|++.
T Consensus        12 ~~~~V~~v~~~s~a~~~-gl~~GD~I~~ing~~i~~--~~~~~~~l~~~~~~~~~l~v~r~~~   71 (79)
T cd00989          12 IEPVIGEVVPGSPAAKA-GLKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNGE   71 (79)
T ss_pred             cCcEEEeECCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHHCCCceEEEEEEECCE
Confidence            45899999999999998 999999999999999965  57777777664 5678888888753

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3938|consensus

Probab=98.75  E-value=1.6e-08  Score=72.01  Aligned_cols=113  Identities=21%  Similarity=0.371  Sum_probs=90.1

Q ss_pred             CCCCChhhhHHHhhhhccCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCee
Q psy12579          7 DVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS   86 (138)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~   86 (138)
                      ++...-..+..+..|.+.+.....+.|++.+..+.||++|...-  -...||..+.+||.-++...+++||.|-+|||.+
T Consensus       104 DM~~llgGqigleDfiFAHvkGq~kEv~v~KsedalGlTITDNG--~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~  181 (334)
T KOG3938|consen  104 DMKRLLGGQIGLEDFIFAHVKGQAKEVEVVKSEDALGLTITDNG--AGYAFIKRIKEGSVIDRIEAICVGDHIEAINGES  181 (334)
T ss_pred             cHHHHhcCccChhhhhhhhhcCcceeEEEEecccccceEEeeCC--cceeeeEeecCCchhhhhhheeHHhHHHhhcCcc
Confidence            33333444556677888888889999999999999999998532  3458999999999998877899999999999999


Q ss_pred             CCCCCHHHHHHHHHhC--CCeEEEEEEECCchHHHHH
Q psy12579         87 VEGEDHGKAVELLKQA--QRSVKLVVRYTPKVLEEME  121 (138)
Q Consensus        87 v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~~~~~~  121 (138)
                      +.++.|.++..+++..  +..++|.+.-+...+....
T Consensus       182 ivG~RHYeVArmLKel~rge~ftlrLiePk~af~~~~  218 (334)
T KOG3938|consen  182 IVGKRHYEVARMLKELPRGETFTLRLIEPKSAFDGIG  218 (334)
T ss_pred             ccchhHHHHHHHHHhcccCCeeEEEeeccccccCccc
Confidence            9999999999999985  5667777765544444443

>KOG3606|consensus

Probab=98.75  E-value=4.1e-08  Score=70.18  Aligned_cols=83  Identities=33%  Similarity=0.595  Sum_probs=69.6

Q ss_pred             cEEEEEecCC--CCcCeEEeccC---------CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579         30 PRVVELPKTD--EGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL   98 (138)
Q Consensus        30 ~~~v~l~~~~--~~~G~~l~~~~---------~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~   98 (138)
                      -|.|+|++-+  .++||-|+.|.         +.-.|+||+.+.+||-|+..|-|.++|++++|||+.+.+.+.+++..|
T Consensus       159 HRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDM  238 (358)
T KOG3606|consen  159 HRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDM  238 (358)
T ss_pred             hhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHH
Confidence            3457887743  68999998664         235679999999999999998899999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEE
Q psy12579         99 LKQAQRSVKLVVRY  112 (138)
Q Consensus        99 l~~~~~~v~l~v~r  112 (138)
                      +-.....+-++|+.
T Consensus       239 MvANshNLIiTVkP  252 (358)
T KOG3606|consen  239 MVANSHNLIITVKP  252 (358)
T ss_pred             HhhcccceEEEecc
Confidence            87777777777764

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.74  E-value=1.4e-07  Score=55.97  Aligned_cols=67  Identities=27%  Similarity=0.338  Sum_probs=50.5

Q ss_pred             cCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579         42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        42 ~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      +|+.+...   +.++.|..|.++++|+.+ ||+.||.|++||+..+.+  ..++...+ ..+..+.+++.|+..
T Consensus         3 ~G~~~~~~---~~~~~V~~V~~~s~a~~a-Gl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~   69 (80)
T cd00990           3 LGLTLDKE---EGLGKVTFVRDDSPADKA-GLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDR   69 (80)
T ss_pred             ccEEEEcc---CCcEEEEEECCCChHHHh-CCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCE
Confidence            57777532   446999999999999999 999999999999999965  23332222 246788888888753

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.66  E-value=2.5e-07  Score=70.65  Aligned_cols=75  Identities=31%  Similarity=0.507  Sum_probs=60.5

Q ss_pred             CCcCeEEeccCCCC---CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579         40 EGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK  115 (138)
Q Consensus        40 ~~~G~~l~~~~~~~---~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~  115 (138)
                      .++|+.+.......   .+++|..|.++|||+.+ ||+.||+|++|||.++.+++..++..+++. .+..+.+++.|++.
T Consensus        85 ~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~a-Gl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~  163 (389)
T PLN00049         85 TGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARA-GIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE  163 (389)
T ss_pred             eEEEEEEEEccCCCCccCcEEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            56888876432211   26899999999999999 999999999999999998888888777765 46788999988754

>KOG3580|consensus

Probab=98.64  E-value=8.9e-08  Score=75.15  Aligned_cols=91  Identities=24%  Similarity=0.476  Sum_probs=74.7

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~  105 (138)
                      +..+.|++.+ +...|+.+.||.  +-|+||..|..|+||+.. ||+.||+|+.||.+++.++..++++..|-..  |..
T Consensus       406 P~tk~VrF~K-GdSvGLRLAGGN--DVGIFVaGvqegspA~~e-GlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEe  481 (1027)
T KOG3580|consen  406 PNTKMVRFKK-GDSVGLRLAGGN--DVGIFVAGVQEGSPAEQE-GLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEE  481 (1027)
T ss_pred             CCceeEEeec-CCeeeeEeccCC--ceeEEEeecccCCchhhc-cccccceeEEeccccchhhhHHHHHHHHhcCCCCcE
Confidence            4556666654 567899999987  568999999999999999 9999999999999999999999999888764  567


Q ss_pred             EEEEEEECCchHHHHHH
Q psy12579        106 VKLVVRYTPKVLEEMEM  122 (138)
Q Consensus       106 v~l~v~r~~~~~~~~~~  122 (138)
                      +.+.-.+..+.|..+..
T Consensus       482 vtilaQ~k~Dvyr~iv~  498 (1027)
T KOG3580|consen  482 VTILAQSKADVYRDIVA  498 (1027)
T ss_pred             EeehhhhhhHHHHHHHh
Confidence            77776776666665544

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.62  E-value=5.7e-07  Score=54.38  Aligned_cols=60  Identities=30%  Similarity=0.421  Sum_probs=49.9

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~  115 (138)
                      ..+++|..+.++++|..+ +|+.||.|++|||..+.+  ..++...+...  +..+.+.+.|++.
T Consensus        23 ~~g~~V~~v~~~s~a~~~-gl~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~g~   84 (90)
T cd00987          23 TKGVLVASVDPGSPAAKA-GLKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRGGK   84 (90)
T ss_pred             CCEEEEEEECCCCHHHHc-CCCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            347999999999999998 999999999999999965  45666666654  6788999988764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.59  E-value=3.3e-07  Score=68.59  Aligned_cols=71  Identities=31%  Similarity=0.487  Sum_probs=58.7

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECC
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTP  114 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~  114 (138)
                      .++|+.+...   ..+++|..|.++|||+.+ ||+.||+|++|||.++.+++..++...+.. .+..+.+++.|.+
T Consensus        51 ~~lG~~~~~~---~~~~~V~~V~~~spA~~a-GL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g  122 (334)
T TIGR00225        51 EGIGIQVGMD---DGEIVIVSPFEGSPAEKA-GIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG  122 (334)
T ss_pred             EEEEEEEEEE---CCEEEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence            4578887642   346899999999999999 899999999999999998876777777655 5678999998875

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.49  E-value=2.2e-06  Score=50.80  Aligned_cols=58  Identities=24%  Similarity=0.474  Sum_probs=47.8

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      .|++|..|.++++|+.  +|+.||.|++|||..+.+  .+++...+..  .+..+.+++.|++.
T Consensus         8 ~Gv~V~~V~~~s~A~~--gL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~   67 (79)
T cd00986           8 HGVYVTSVVEGMPAAG--KLKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEK   67 (79)
T ss_pred             cCEEEEEECCCCchhh--CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            4689999999999884  699999999999999964  5677777764  46788999988764

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.49  E-value=9.6e-07  Score=67.72  Aligned_cols=71  Identities=25%  Similarity=0.428  Sum_probs=62.2

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEEC
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYT  113 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~  113 (138)
                      .++|..+....  ..++.|..+.+++||+++ |+++||+|+.|||.++.++..+++...++.. |..+.|++.|.
T Consensus       100 ~GiG~~i~~~~--~~~~~V~s~~~~~PA~ka-gi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793         100 GGIGIELQMED--IGGVKVVSPIDGSPAAKA-GIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             cceeEEEEEec--CCCcEEEecCCCChHHHc-CCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            67888887643  267899999999999999 6999999999999999999989899888875 67899999996

>KOG0609|consensus

Probab=98.44  E-value=1.7e-06  Score=67.18  Aligned_cols=87  Identities=32%  Similarity=0.528  Sum_probs=74.7

Q ss_pred             CCCCCcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         25 EGHAHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        25 ~~~~~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      ......+.|++.+. +..+|.+++...  ...++|..+..||.+++.|.|+.||.|.+|||+.+.+....++..+++.+.
T Consensus       118 e~~~~vriv~i~k~~~eplG~Tik~~e--~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~  195 (542)
T KOG0609|consen  118 EPVEAVRIVRIVKNTGEPLGATIRVEE--DTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR  195 (542)
T ss_pred             cccceeEEEEEeecCCCccceEEEecc--CCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC
Confidence            33355778888887 689999998753  236999999999999999999999999999999999999999999999998


Q ss_pred             CeEEEEEEEC
Q psy12579        104 RSVKLVVRYT  113 (138)
Q Consensus       104 ~~v~l~v~r~  113 (138)
                      +++++.+...
T Consensus       196 G~itfkiiP~  205 (542)
T KOG0609|consen  196 GSITFKIIPS  205 (542)
T ss_pred             CcEEEEEccc
Confidence            8888877544

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.44  E-value=1.2e-06  Score=70.82  Aligned_cols=71  Identities=27%  Similarity=0.383  Sum_probs=58.2

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECC-----eeCCCCCHHHHHHHHHhC-CCeEEEEEEEC
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG-----VSVEGEDHGKAVELLKQA-QRSVKLVVRYT  113 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing-----~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~  113 (138)
                      .|+|+.+...   +.+++|..|.+||||++++||++||.|++||+     ..+.++..+++..+|+.. |..|.|+|.+.
T Consensus       244 ~GIGa~l~~~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        244 EGIGAVLQMD---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             eEEEEEEEEe---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            5678887652   34589999999999999889999999999994     355678888999999874 67899999874

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.36  E-value=4.5e-06  Score=60.43  Aligned_cols=61  Identities=16%  Similarity=0.229  Sum_probs=51.2

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV  116 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~  116 (138)
                      ..|+.|..+.++++++++ ||+.||.|++|||.++.+  ..++..++..  .+..+.++|.|++..
T Consensus       190 ~~G~~v~~v~~~s~a~~a-GLr~GDvIv~ING~~i~~--~~~~~~~l~~~~~~~~v~l~V~R~G~~  252 (259)
T TIGR01713       190 LEGYRLNPGKDPSLFYKS-GLQDGDIAVALNGLDLRD--PEQAFQALQMLREETNLTLTVERDGQR  252 (259)
T ss_pred             eeEEEEEecCCCCHHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCeEEEEEEECCEE
Confidence            357999999999999999 999999999999999966  4666666666  356899999998753

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.30  E-value=4.4e-06  Score=64.54  Aligned_cols=60  Identities=27%  Similarity=0.450  Sum_probs=50.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV  116 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~  116 (138)
                      .+++|..|.++|||+++ ||+.||+|++|||..+.+  ..+....+..  .+..+.+++.|++..
T Consensus       257 ~Gv~V~~V~~~spA~~a-GL~~GDvI~~Vng~~i~~--~~~~~~~l~~~~~g~~v~l~v~R~g~~  318 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKA-GLKAGDVILSVNGKPISS--FADLRRAIGTLKPGKKVTLGILRKGKE  318 (428)
T ss_pred             CceEEEEccCCCChHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            57999999999999999 999999999999999965  4566666554  467899999887643

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=98.23  E-value=8.6e-06  Score=63.44  Aligned_cols=59  Identities=20%  Similarity=0.311  Sum_probs=51.5

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      .+++|..|.++++|+++ ||+.||.|++||+.++.+  +++....+......+.|++.|+..
T Consensus       390 ~Gv~V~~V~~~spA~~a-GL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~  448 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQA-GLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNE  448 (455)
T ss_pred             CceEEEEeCCCChHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence            46899999999999999 999999999999999955  578888887766788999999864

>PRK10942 serine endoprotease; Provisional

Probab=98.19  E-value=1.1e-05  Score=63.08  Aligned_cols=59  Identities=20%  Similarity=0.367  Sum_probs=52.1

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      .+++|..|.++++|+++ ||+.||.|++||+.++.+  .+++..++...+..+.|+|.|...
T Consensus       408 ~gvvV~~V~~~S~A~~a-GL~~GDvIv~VNg~~V~s--~~dl~~~l~~~~~~v~l~V~R~g~  466 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQI-GLKKGDVIIGANQQPVKN--IAELRKILDSKPSVLALNIQRGDS  466 (473)
T ss_pred             CCeEEEEeCCCChHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECCE
Confidence            47999999999999998 999999999999999955  588888888766788999999864

>PRK10139 serine endoprotease; Provisional

Probab=98.17  E-value=1.6e-05  Score=62.03  Aligned_cols=60  Identities=22%  Similarity=0.367  Sum_probs=50.8

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ..|++|..|.++|||+++ ||+.||+|++|||..+.+  +.+....+..  .+..+.+++.|++.
T Consensus       289 ~~Gv~V~~V~~~SpA~~A-GL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~V~R~G~  350 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKA-GVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGK  350 (455)
T ss_pred             CCceEEEEECCCChHHHC-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            357999999999999999 999999999999999965  5777766654  47788999988764

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.15  E-value=1.6e-05  Score=61.40  Aligned_cols=59  Identities=25%  Similarity=0.410  Sum_probs=51.5

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      .+++|..|.++++|+++ ||+.||.|++|||.++.+  ..++..++..  .+..+.+++.|+..
T Consensus       362 ~Gv~V~~V~~~SpA~~a-GL~~GDvI~~Ing~~V~s--~~d~~~~l~~~~~g~~v~l~v~R~g~  422 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARA-GLQPGDVILSVNQQPVSS--VAELRKVLDRAKKGGRVALLILRGGA  422 (428)
T ss_pred             CceEEEEeCCCCHHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            57999999999999999 999999999999999955  5777888775  46789999999864

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR00054 RIP metalloprotease RseP

Probab=98.14  E-value=1.6e-05  Score=61.35  Aligned_cols=59  Identities=25%  Similarity=0.403  Sum_probs=50.1

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~  115 (138)
                      .++.|..|.+++||+.+ ||++||+|++|||.++.+  ..+....+.. .+..+.+++.|++.
T Consensus       203 ~g~vV~~V~~~SpA~~a-GL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~  262 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKA-GLKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNGE  262 (420)
T ss_pred             cCcEEEEECCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECCE
Confidence            36899999999999999 999999999999999955  5777777766 45678888888864

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.12  E-value=1.8e-05  Score=59.81  Aligned_cols=59  Identities=25%  Similarity=0.343  Sum_probs=50.5

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      .+++|..|.+++||+.+ ||+.||.|++|||..+.+  ..+....+..  .+..+.+++.|++.
T Consensus       278 ~Gv~V~~V~~~spA~~a-GL~~GDvI~~Ing~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~g~  338 (351)
T TIGR02038       278 RGIVITGVDPNGPAARA-GILVRDVILKYDGKDVIG--AEELMDRIAETRPGSKVMVTVLRQGK  338 (351)
T ss_pred             ccceEeecCCCChHHHC-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            57999999999999999 999999999999999955  5666666654  57889999999864

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>KOG3605|consensus

Probab=98.11  E-value=5.2e-06  Score=65.80  Aligned_cols=87  Identities=32%  Similarity=0.468  Sum_probs=68.5

Q ss_pred             EEEEEec-CCCCcCeEEec-cCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC--e
Q psy12579         31 RVVELPK-TDEGLGFNVMG-GKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR--S  105 (138)
Q Consensus        31 ~~v~l~~-~~~~~G~~l~~-~~~~-~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~--~  105 (138)
                      +.|.+.| .++.||..|.- |+.. -..|+|.....+|||+++|.|..||+|++|||..+.++.......+|++.++  .
T Consensus       647 KEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~  726 (829)
T KOG3605|consen  647 KEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTA  726 (829)
T ss_pred             ceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccce
Confidence            4466655 45788988753 2211 1237788999999999999999999999999999999999999999998754  5


Q ss_pred             EEEEEEECCchH
Q psy12579        106 VKLVVRYTPKVL  117 (138)
Q Consensus       106 v~l~v~r~~~~~  117 (138)
                      |.|+|.+.|++.
T Consensus       727 VkltiV~cpPV~  738 (829)
T KOG3605|consen  727 VKLNIVSCPPVT  738 (829)
T ss_pred             EEEEEecCCCce
Confidence            788888777653

>PRK10898 serine endoprotease; Provisional

Probab=98.05  E-value=2e-05  Score=59.51  Aligned_cols=59  Identities=20%  Similarity=0.333  Sum_probs=49.4

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      .+++|..|.+++||+++ ||+.||.|++|||.++.+  ..+....+..  .+..+.+++.|+..
T Consensus       279 ~Gv~V~~V~~~spA~~a-GL~~GDvI~~Ing~~V~s--~~~l~~~l~~~~~g~~v~l~v~R~g~  339 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKA-GIQVNDLIISVNNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK  339 (353)
T ss_pred             CeEEEEEECCCChHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            57999999999999999 999999999999999955  4555555544  56789999998864

>KOG3605|consensus

Probab=98.05  E-value=6e-06  Score=65.48  Aligned_cols=73  Identities=33%  Similarity=0.598  Sum_probs=61.8

Q ss_pred             CCcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         28 AHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      +...+|.|+|..  ..|||++..|       +|+.+..||.|++- |+++|.+|++|||..|.-..|+.++++|..+-+.
T Consensus       735 pPV~~V~I~RPd~kyQLGFSVQNG-------iICSLlRGGIAERG-GVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGE  806 (829)
T KOG3605|consen  735 PPVTTVLIRRPDLRYQLGFSVQNG-------IICSLLRGGIAERG-GVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGE  806 (829)
T ss_pred             CCceEEEeecccchhhccceeeCc-------Eeehhhcccchhcc-CceeeeeEEEECCceEEeccHHHHHHHHHHhhhh
Confidence            456667777766  4699999863       78899999999996 9999999999999999999999999999887555


Q ss_pred             EEE
Q psy12579        106 VKL  108 (138)
Q Consensus       106 v~l  108 (138)
                      +.|
T Consensus       807 IhM  809 (829)
T KOG3605|consen  807 IHM  809 (829)
T ss_pred             hhh
Confidence            544

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.04  E-value=3.3e-05  Score=60.12  Aligned_cols=58  Identities=19%  Similarity=0.405  Sum_probs=49.1

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579         55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK  115 (138)
Q Consensus        55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~  115 (138)
                      ++.|..|.++|||+.+ ||++||+|++|||.++.+  ..+....+.. .+..+.+++.|++.
T Consensus       222 ~~vV~~V~~~SpA~~A-GL~~GDvIl~Ing~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g~  280 (449)
T PRK10779        222 EPVLAEVQPNSAASKA-GLQAGDRIVKVDGQPLTQ--WQTFVTLVRDNPGKPLALEIERQGS  280 (449)
T ss_pred             CcEEEeeCCCCHHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCEEEEEEEECCE
Confidence            4789999999999999 999999999999999954  5777777765 45678899888864

>PRK10942 serine endoprotease; Provisional

Probab=98.03  E-value=2.4e-05  Score=61.29  Aligned_cols=60  Identities=20%  Similarity=0.359  Sum_probs=50.0

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ..|++|..|.+++||+++ ||+.||+|++|||..+.+  ..+....+..  .+..+.+++.|++.
T Consensus       310 ~~GvlV~~V~~~SpA~~A-GL~~GDvIl~InG~~V~s--~~dl~~~l~~~~~g~~v~l~v~R~G~  371 (473)
T PRK10942        310 QRGAFVSQVLPNSSAAKA-GIKAGDVITSLNGKPISS--FAALRAQVGTMPVGSKLTLGLLRDGK  371 (473)
T ss_pred             CCceEEEEECCCChHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCe
Confidence            357999999999999999 999999999999999965  4666666654  36788998888764

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.02  E-value=1.3e-05  Score=62.30  Aligned_cols=57  Identities=18%  Similarity=0.233  Sum_probs=46.8

Q ss_pred             eEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        56 v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ..|..|.++|||+++ ||+.||+|+++||..+.++  .+....+..  .+..+.+++.|++.
T Consensus       128 ~lV~~V~~~SpA~kA-GLk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk  186 (449)
T PRK10779        128 PVVGEIAPNSIAAQA-QIAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGS  186 (449)
T ss_pred             ccccccCCCCHHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCc
Confidence            478999999999999 9999999999999999765  555444433  35679999999864

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.86  E-value=0.00017  Score=55.17  Aligned_cols=68  Identities=16%  Similarity=0.367  Sum_probs=50.3

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEc--------CCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEE
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRII--------PGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVV  110 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~--------~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v  110 (138)
                      ..+|+.+.     ..|+.|....        .++||+.+ +|+.||.|++|||.++.+  ..++..++... +..+.+++
T Consensus        96 ~~iGI~l~-----t~GVlVvg~~~v~~~~g~~~SPAa~A-GLq~GDiIvsING~~V~s--~~DL~~iL~~~~g~~V~LtV  167 (402)
T TIGR02860        96 QSIGVKLN-----TKGVLVVGFSDIETEKGKIHSPGEEA-GIQIGDRILKINGEKIKN--MDDLANLINKAGGEKLTLTI  167 (402)
T ss_pred             EEEEEEEe-----cCEEEEEEEEcccccCCCCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCeEEEEE
Confidence            34555543     2457765542        25889888 999999999999999955  57777777764 57789999


Q ss_pred             EECCc
Q psy12579        111 RYTPK  115 (138)
Q Consensus       111 ~r~~~  115 (138)
                      .|+..
T Consensus       168 ~R~Ge  172 (402)
T TIGR02860       168 ERGGK  172 (402)
T ss_pred             EECCE
Confidence            98864

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.80  E-value=0.00013  Score=48.02  Aligned_cols=81  Identities=21%  Similarity=0.303  Sum_probs=51.0

Q ss_pred             CcEEEEEecC-----CCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCC-CCEEEEECCeeCCCCCHHHHHHHH
Q psy12579         29 HPRVVELPKT-----DEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKR-GDQLLSVNGVSVEGEDHGKAVELL   99 (138)
Q Consensus        29 ~~~~v~l~~~-----~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~-gD~i~~ing~~v~~~~~~~~~~~l   99 (138)
                      ..|.|.+.-.     .+.+|++++.....   ..++.|..|.++|||+.+ ||.+ .|.|+.+++..+.+.  ++....+
T Consensus        10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~A-GL~p~~DyIig~~~~~l~~~--~~l~~~v   86 (138)
T PF04495_consen   10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKA-GLEPFFDYIIGIDGGLLDDE--DDLFELV   86 (138)
T ss_dssp             SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHT-T--TTTEEEEEETTCE--ST--CHHHHHH
T ss_pred             eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHC-CccccccEEEEccceecCCH--HHHHHHH
Confidence            4455555431     34589998754322   446889999999999999 8998 699999999888753  5666666


Q ss_pred             HhC-CCeEEEEEEE
Q psy12579        100 KQA-QRSVKLVVRY  112 (138)
Q Consensus       100 ~~~-~~~v~l~v~r  112 (138)
                      ... +..+.|.|-.
T Consensus        87 ~~~~~~~l~L~Vyn  100 (138)
T PF04495_consen   87 EANENKPLQLYVYN  100 (138)
T ss_dssp             HHTTTS-EEEEEEE
T ss_pred             HHcCCCcEEEEEEE
Confidence            654 5677777754

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>KOG0606|consensus

Probab=97.73  E-value=0.00014  Score=60.99  Aligned_cols=79  Identities=24%  Similarity=0.325  Sum_probs=64.3

Q ss_pred             EEEEecCCCCcCeEEeccCCC--CCC-----eEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         32 VVELPKTDEGLGFNVMGGKEQ--NSP-----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        32 ~v~l~~~~~~~G~~l~~~~~~--~~~-----v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      .|.++++..+|||++..-+-+  +..     ..|..|.+++||..+ +++.||.|..+||..+.++.|.++.+++-..+.
T Consensus       629 pI~i~~~~~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~a-gls~~DlIthvnge~v~gl~H~ev~~Lll~~gn  707 (1205)
T KOG0606|consen  629 PITIHFSGKKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEA-GLSAGDLITHVNGEPVHGLVHTEVMELLLKSGN  707 (1205)
T ss_pred             ceeeeccccccCceeeeEEEecCCcccceeeeeeeeecCCCCcccc-CCCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence            378888899999987532211  122     358889999999998 999999999999999999999999999988887


Q ss_pred             eEEEEEE
Q psy12579        105 SVKLVVR  111 (138)
Q Consensus       105 ~v~l~v~  111 (138)
                      .+.+.+.
T Consensus       708 ~v~~~tt  714 (1205)
T KOG0606|consen  708 KVTLRTT  714 (1205)
T ss_pred             eeEEEee
Confidence            7766654

>TIGR00054 RIP metalloprotease RseP

Probab=97.61  E-value=0.00024  Score=54.90  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=46.5

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP  114 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~  114 (138)
                      .+.+|..|.++|||+++ |++.||.|+++||..+.+.  .+..+.+....+.+.+.+.|+.
T Consensus       128 ~g~~V~~V~~~SpA~~A-GL~~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~g  185 (420)
T TIGR00054       128 VGPVIELLDKNSIALEA-GIEPGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAER  185 (420)
T ss_pred             CCceeeccCCCCHHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEec
Confidence            46789999999999999 9999999999999999654  6666555544467777777653

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG3532|consensus

Probab=97.59  E-value=0.00048  Score=55.50  Aligned_cols=81  Identities=19%  Similarity=0.344  Sum_probs=60.6

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCchHHH
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEE  119 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~~~~  119 (138)
                      ..+|+.+....  ...|.|..|.++++|.++ .+++||++++|||.++  .+..++...++.....+...+.+.-...++
T Consensus       386 ~~ig~vf~~~~--~~~v~v~tv~~ns~a~k~-~~~~gdvlvai~~~pi--~s~~q~~~~~~s~~~~~~~l~~~~~~~~d~  460 (1051)
T KOG3532|consen  386 SPIGLVFDKNT--NRAVKVCTVEDNSLADKA-AFKPGDVLVAINNVPI--RSERQATRFLQSTTGDLTVLVERSLDDIDE  460 (1051)
T ss_pred             CceeEEEecCC--ceEEEEEEecCCChhhHh-cCCCcceEEEecCccc--hhHHHHHHHHHhcccceEEEEeecccchhh
Confidence            45676665422  345789999999999999 9999999999999999  446788888888776776666665555555


Q ss_pred             HHHHhh
Q psy12579        120 MEMRFD  125 (138)
Q Consensus       120 ~~~~~~  125 (138)
                      .+..++
T Consensus       461 ~~~~~~  466 (1051)
T KOG3532|consen  461 EESKGK  466 (1051)
T ss_pred             HHhccc
Confidence            555443

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=97.58  E-value=0.00069  Score=41.10  Aligned_cols=69  Identities=30%  Similarity=0.462  Sum_probs=41.2

Q ss_pred             cCeEEeccCCCCCCeEEEEEcCC--------Chhhhc-CCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEE
Q psy12579         42 LGFNVMGGKEQNSPIYISRIIPG--------GVADRH-GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVR  111 (138)
Q Consensus        42 ~G~~l~~~~~~~~~v~V~~v~~g--------s~a~~~-~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~  111 (138)
                      ||..+...   ..++.|.++.+|        ||.... -.++.||+|++|||.++...  .....+|.+ ++..+.|++.
T Consensus         3 LGAd~~~~---~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~   77 (88)
T PF14685_consen    3 LGADFSYD---NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVN   77 (88)
T ss_dssp             -SEEEEEE---TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE
T ss_pred             cceEEEEc---CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEe
Confidence            55555442   345788888776        454444 15669999999999999653  345566655 6788999998


Q ss_pred             ECCc
Q psy12579        112 YTPK  115 (138)
Q Consensus       112 r~~~  115 (138)
                      +.+.
T Consensus        78 ~~~~   81 (88)
T PF14685_consen   78 RKPG   81 (88)
T ss_dssp             -STT
T ss_pred             cCCC
Confidence            8764

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.58  E-value=0.00021  Score=55.04  Aligned_cols=52  Identities=31%  Similarity=0.454  Sum_probs=40.2

Q ss_pred             EEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE-ECC
Q psy12579         58 ISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR-YTP  114 (138)
Q Consensus        58 V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~-r~~  114 (138)
                      |..|.++|+|+.+ ||++||+|++|||..+.+  +.+....+.  +..+.+++. +++
T Consensus         2 I~~V~pgSpAe~A-GLe~GD~IlsING~~V~D--w~D~~~~l~--~e~l~L~V~~rdG   54 (433)
T TIGR03279         2 ISAVLPGSIAEEL-GFEPGDALVSINGVAPRD--LIDYQFLCA--DEELELEVLDANG   54 (433)
T ss_pred             cCCcCCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHhc--CCcEEEEEEcCCC
Confidence            5678899999999 999999999999999965  466555553  356777775 443

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG1738|consensus

Probab=97.31  E-value=0.0005  Score=54.67  Aligned_cols=76  Identities=25%  Similarity=0.405  Sum_probs=63.5

Q ss_pred             cCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12579         37 KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP  114 (138)
Q Consensus        37 ~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~  114 (138)
                      +.+.++|+-|..  ..++.++|..+.+++||.....|..||.+++||+..+.++.+.-++..+.....-+.+++...+
T Consensus       210 kp~eglg~~I~S--sydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkKrp  285 (638)
T KOG1738|consen  210 SPSEGLGLYIDS--SYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKKRP  285 (638)
T ss_pred             CcccCCceEEee--ecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeeccC
Confidence            345788988876  3366789999999999999989999999999999999999999988888887666777775443

>KOG3129|consensus

Probab=97.19  E-value=0.002  Score=44.85  Aligned_cols=60  Identities=20%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCC-HHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579         55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED-HGKAVELLKQ-AQRSVKLVVRYTPK  115 (138)
Q Consensus        55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~-~~~~~~~l~~-~~~~v~l~v~r~~~  115 (138)
                      .++|..|.++|||+.+ ||+.||.|+.+.++.-.+.. .......... .+..+.+++.|.+.
T Consensus       140 Fa~V~sV~~~SPA~~a-Gl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~  201 (231)
T KOG3129|consen  140 FAVVDSVVPGSPADEA-GLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQ  201 (231)
T ss_pred             eEEEeecCCCChhhhh-CcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCC
Confidence            4789999999999999 99999999999887765543 2232222222 35678888877654

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.0022  Score=48.36  Aligned_cols=60  Identities=25%  Similarity=0.356  Sum_probs=48.9

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ..|++|..+.+++||+++ +++.||.|+++||..+.+.  .+....+..  .+..+.+.+.|.++
T Consensus       269 ~~G~~V~~v~~~spa~~a-gi~~Gdii~~vng~~v~~~--~~l~~~v~~~~~g~~v~~~~~r~g~  330 (347)
T COG0265         269 AAGAVVLGVLPGSPAAKA-GIKAGDIITAVNGKPVASL--SDLVAAVASNRPGDEVALKLLRGGK  330 (347)
T ss_pred             CCceEEEecCCCChHHHc-CCCCCCEEEEECCEEccCH--HHHHHHHhccCCCCEEEEEEEECCE
Confidence            456999999999999999 9999999999999999664  444444433  46789999998854

>KOG4407|consensus

Probab=96.86  E-value=0.002  Score=55.34  Aligned_cols=69  Identities=26%  Similarity=0.352  Sum_probs=53.6

Q ss_pred             eEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE-EECCchHHHHHHHhh
Q psy12579         56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV-RYTPKVLEEMEMRFD  125 (138)
Q Consensus        56 v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v-~r~~~~~~~~~~~~~  125 (138)
                      +||..|.+.++++.+ .|+.||.++.+|+.++.+..+.+++.++++....+.+.| -+.+++....++-+.
T Consensus       145 ~~~~eV~~n~~~~~a-~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P~~~dv~q~~~t~i~  214 (1973)
T KOG4407|consen  145 IFIKEVQANGPAHYA-NLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVPKECDVLQMHYTSIA  214 (1973)
T ss_pred             hhhhhhccCChhHHH-hhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceeccccCchHhhhccccc
Confidence            478888999999998 999999999999999999999999999988765555544 345566555554433

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=96.80  E-value=0.0042  Score=48.81  Aligned_cols=41  Identities=34%  Similarity=0.632  Sum_probs=35.3

Q ss_pred             CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCe
Q psy12579         41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV   85 (138)
Q Consensus        41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~   85 (138)
                      .+|+.+...   .....|..|.++|||..+ ||.+||.|++|||.
T Consensus       452 ~LGl~v~~~---~g~~~i~~V~~~gPA~~A-Gl~~Gd~ivai~G~  492 (558)
T COG3975         452 YLGLKVKSE---GGHEKITFVFPGGPAYKA-GLSPGDKIVAINGI  492 (558)
T ss_pred             ccceEeccc---CCeeEEEecCCCChhHhc-cCCCccEEEEEcCc
Confidence            577777642   345789999999999999 99999999999999

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=96.80  E-value=0.004  Score=45.46  Aligned_cols=45  Identities=22%  Similarity=0.320  Sum_probs=36.0

Q ss_pred             CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCchH
Q psy12579         71 GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKVL  117 (138)
Q Consensus        71 ~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~~  117 (138)
                      .||+.||.+++|||.++.+.  .++.+++.+.  ...+.++|+|++...
T Consensus       223 ~GLq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~~  269 (276)
T PRK09681        223 SGFKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGARH  269 (276)
T ss_pred             cCCCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEEE
Confidence            39999999999999999764  5566666654  467999999998643

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=96.27  E-value=0.029  Score=40.11  Aligned_cols=70  Identities=24%  Similarity=0.408  Sum_probs=48.1

Q ss_pred             EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEE
Q psy12579         31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKL  108 (138)
Q Consensus        31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l  108 (138)
                      +-..+.+++.-+|+.+..+++            ++.=... ||+.||..+++|+.++.+  -++...++...  ...+.+
T Consensus       196 rltpv~r~eki~Gyr~~pgkd------------~slF~~s-glq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~ql  260 (275)
T COG3031         196 RLTPVIRNEKIEGYRFEPGKD------------GSLFYKS-GLQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQL  260 (275)
T ss_pred             EeeeEeeCCceEEEEecCCCC------------cchhhhh-cCCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEE
Confidence            334445566677887776653            2222344 999999999999999955  45555555553  467899


Q ss_pred             EEEECCc
Q psy12579        109 VVRYTPK  115 (138)
Q Consensus       109 ~v~r~~~  115 (138)
                      +|.|++.
T Consensus       261 Tv~R~G~  267 (275)
T COG3031         261 TVIRRGK  267 (275)
T ss_pred             EEEecCc
Confidence            9999874

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=96.26  E-value=0.027  Score=41.77  Aligned_cols=57  Identities=16%  Similarity=0.357  Sum_probs=47.2

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      |+|+..+..++++.  +-|..||.|.+|||.++.+  .++...++..  .|+.+.+.++|...
T Consensus       131 gvyv~~v~~~~~~~--gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~k~Gd~VtI~~~r~~~  189 (342)
T COG3480         131 GVYVLSVIDNSPFK--GKLEAGDTIIAVDGEPFTS--SDELIDYVSSKKPGDEVTIDYERHNE  189 (342)
T ss_pred             eEEEEEccCCcchh--ceeccCCeEEeeCCeecCC--HHHHHHHHhccCCCCeEEEEEEeccC
Confidence            58999999999988  4699999999999999955  5777777755  58999999997543

>KOG1421|consensus

Probab=96.14  E-value=0.016  Score=47.16  Aligned_cols=56  Identities=21%  Similarity=0.487  Sum_probs=46.3

Q ss_pred             eEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579         56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK  115 (138)
Q Consensus        56 v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~  115 (138)
                      ++|..|.++|++.+.  |.+||.+++||+..+.+  ...+.+++.. .|..+.|++.|.+.
T Consensus       305 LvV~~vL~~gpa~k~--Le~GDillavN~t~l~d--f~~l~~iLDegvgk~l~LtI~Rggq  361 (955)
T KOG1421|consen  305 LVVETVLPEGPAEKK--LEPGDILLAVNSTCLND--FEALEQILDEGVGKNLELTIQRGGQ  361 (955)
T ss_pred             EEEEEeccCCchhhc--cCCCcEEEEEcceehHH--HHHHHHHHhhccCceEEEEEEeCCE
Confidence            679999999999975  99999999999877743  4666677654 58899999999875

>KOG1320|consensus

Probab=95.92  E-value=0.036  Score=43.45  Aligned_cols=57  Identities=30%  Similarity=0.542  Sum_probs=46.4

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--CeEEEEEEECC
Q psy12579         55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSVKLVVRYTP  114 (138)
Q Consensus        55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~--~~v~l~v~r~~  114 (138)
                      ++.|..|.+++++... ++..||+|.+|||..+.+.  .++..+++.+.  +.+.+..++..
T Consensus       399 ~v~is~Vlp~~~~~~~-~~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~~  457 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGY-GLKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRSA  457 (473)
T ss_pred             EEEEEEeccCCCcccc-cccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecCc
Confidence            4789999999999988 9999999999999999775  66778887764  46666555543

>KOG4371|consensus

Probab=93.31  E-value=0.15  Score=43.55  Aligned_cols=84  Identities=27%  Similarity=0.449  Sum_probs=61.4

Q ss_pred             EEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE
Q psy12579         32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR  111 (138)
Q Consensus        32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~  111 (138)
                      .+.+.+....+|..+..-   ...+-|+...-.+.-..- .|.+||.+.-+||+-+.+.-+.++..+++..++.+.+-|.
T Consensus      1150 ~~~~~r~~~~l~~~~a~~---~~~~~~~~~~~~~~~~~p-d~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 (1332)
T KOG4371|consen 1150 DVELDRNEGSLGVQIASL---SGRVCIKQLTSEPAISHP-DIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQ 1225 (1332)
T ss_pred             cccCCCCCCCCCceeccC---ccceehhhcccCCCCCCC-CcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEee
Confidence            344555566688777642   122344444433333333 7999999999999999999999999999999999999999


Q ss_pred             ECCchHHH
Q psy12579        112 YTPKVLEE  119 (138)
Q Consensus       112 r~~~~~~~  119 (138)
                      |.+..+..
T Consensus      1226 r~~~~~~d 1233 (1332)
T KOG4371|consen 1226 RPPPAYSD 1233 (1332)
T ss_pred             cCCccccc
Confidence            99876553

>PF12812 PDZ_1: PDZ-like domain

Probab=93.15  E-value=0.72  Score=27.24  Aligned_cols=46  Identities=20%  Similarity=0.227  Sum_probs=35.2

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      +.++.....|+++..- ++..|-.|.+||+.++.+  .++..+.++...
T Consensus        31 ~gv~v~~~~g~~~~~~-~i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~ip   76 (78)
T PF12812_consen   31 GGVYVAVSGGSLAFAG-GISKGFIITSVNGKPTPD--LDDFIKVVKKIP   76 (78)
T ss_pred             CEEEEEecCCChhhhC-CCCCCeEEEeECCcCCcC--HHHHHHHHHhCC
Confidence            3556666677777754 699999999999999965  577788777654

>KOG3834|consensus

Probab=88.59  E-value=1.1  Score=34.94  Aligned_cols=58  Identities=24%  Similarity=0.278  Sum_probs=42.8

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR  111 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~  111 (138)
                      ..+..|.+|..+++++++|-.---|.|++|||..+.. ..+....+++..-..|.|++.
T Consensus        14 teg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~-dnd~Lk~llk~~sekVkltv~   71 (462)
T KOG3834|consen   14 TEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNK-DNDTLKALLKANSEKVKLTVY   71 (462)
T ss_pred             ceeEEEEEeecCChHHhcCcchhhhhhheeCcccccC-chHHHHHHHHhcccceEEEEE
Confidence            3457899999999999994445589999999999854 344555556665555777774

>KOG2921|consensus

Probab=88.53  E-value=1.3  Score=34.15  Aligned_cols=47  Identities=19%  Similarity=0.224  Sum_probs=38.0

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      +.++.|..|...||+..-.||.+||.|.++||.++.+  ..++...+..
T Consensus       219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~--v~dW~ecl~t  265 (484)
T KOG2921|consen  219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHK--VSDWLECLAT  265 (484)
T ss_pred             CceEEEEeccccCCCcCcccCCccceEEecCCcccCC--HHHHHHHHHh
Confidence            4468899999999988777999999999999999954  4666666654

>KOG4371|consensus

Probab=85.61  E-value=1.8  Score=37.41  Aligned_cols=82  Identities=29%  Similarity=0.400  Sum_probs=60.8

Q ss_pred             cEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         30 PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        30 ~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      -+.+.+.+.. .++|+.+.... ...++++..+...+.|.-.+.+++||.++..++.++.+.+-...+..++...+.+.+
T Consensus      1246 l~~~~~~~~p~~~~~~~~~~~~-~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~ 1324 (1332)
T KOG4371|consen 1246 LISVMLLKKPMATLGLSLAKRT-MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQI 1324 (1332)
T ss_pred             hhhheeeecccccccccccccC-cCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhh
Confidence            3444444444 67888776532 256789988888877777789999999999999999998887777766666667766


Q ss_pred             EEEE
Q psy12579        109 VVRY  112 (138)
Q Consensus       109 ~v~r  112 (138)
                      ++.+
T Consensus      1325 ~~~~ 1328 (1332)
T KOG4371|consen 1325 TVTR 1328 (1332)
T ss_pred             eehh
Confidence            6654

>KOG3834|consensus

Probab=85.34  E-value=5.8  Score=31.04  Aligned_cols=84  Identities=20%  Similarity=0.265  Sum_probs=51.6

Q ss_pred             CCCCCcEEEEEecCC-CC---cCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCC-CCCEEEEECCeeCCCCCHHHHH
Q psy12579         25 EGHAHPRVVELPKTD-EG---LGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLK-RGDQLLSVNGVSVEGEDHGKAV   96 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~-~~---~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~-~gD~i~~ing~~v~~~~~~~~~   96 (138)
                      +.-.+.|.+.+...+ .+   ||.+|+-....   ..-+.|..|.+.+||+++ ||. -+|+|+-+-....  ...++.+
T Consensus        73 ~kt~~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalA-gl~~~~DYivG~~~~~~--~~~eDl~  149 (462)
T KOG3834|consen   73 SKTQEVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALA-GLRPYTDYIVGIWDAVM--HEEEDLF  149 (462)
T ss_pred             cccceeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhc-ccccccceEecchhhhc--cchHHHH
Confidence            333566666666543 34   78877643321   223568889999999999 666 8999998722222  2235555


Q ss_pred             HHHHh-CCCeEEEEEE
Q psy12579         97 ELLKQ-AQRSVKLVVR  111 (138)
Q Consensus        97 ~~l~~-~~~~v~l~v~  111 (138)
                      .+|.. .++.+.|.|.
T Consensus       150 ~lIeshe~kpLklyVY  165 (462)
T KOG3834|consen  150 TLIESHEGKPLKLYVY  165 (462)
T ss_pred             HHHHhccCCCcceeEe
Confidence            55544 4566666553

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=83.29  E-value=5.3  Score=30.27  Aligned_cols=53  Identities=25%  Similarity=0.398  Sum_probs=39.7

Q ss_pred             EEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCe---EEEEEEE
Q psy12579         57 YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRS---VKLVVRY  112 (138)
Q Consensus        57 ~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~---v~l~v~r  112 (138)
                      .+..+...+++..+ ++..||.++++|+..+.++  .++...+.. .+..   +.+.+.|
T Consensus       132 ~~~~v~~~s~a~~a-~l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~~~  188 (375)
T COG0750         132 VVGEVAPKSAAALA-GLRPGDRIVAVDGEKVASW--DDVRRLLVAAAGDVFNLLTILVIR  188 (375)
T ss_pred             eeeecCCCCHHHHc-CCCCCCEEEeECCEEccCH--HHHHHHHHhccCCcccceEEEEEe
Confidence            34468889999999 9999999999999999654  555555443 3334   6777777

>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised

Probab=80.44  E-value=4.2  Score=28.13  Aligned_cols=39  Identities=15%  Similarity=0.323  Sum_probs=31.9

Q ss_pred             CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEEC
Q psy12579         41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVN   83 (138)
Q Consensus        41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~in   83 (138)
                      ..|+++...   +..+.|..+..||+|+++ ++.-+..|.++-
T Consensus       112 ~~GL~l~~e---~~~~~Vd~v~fgS~A~~~-g~d~d~~I~~v~  150 (183)
T PF11874_consen  112 AAGLTLMEE---GGKVIVDEVEFGSPAEKA-GIDFDWEITEVE  150 (183)
T ss_pred             hCCCEEEee---CCEEEEEecCCCCHHHHc-CCCCCcEEEEEE
Confidence            368887752   345899999999999999 999999998863

This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	138
2dkr_A	93	Solution Structure Of The Pdz Domain From Human Lin		3e-37
2he2_A	102	Crystal Structure Of The 3rd Pdz Domain Of Human Di		1e-15
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		5e-15
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		6e-15
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		3e-14
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		6e-14
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		6e-14
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		7e-14
3k82_A	98	Crystal Structure Of The Third Pdz Domain Of Psd-95		8e-14
2q9v_A	90	Crystal Structure Of The C890s Mutant Of The 4th Pd		5e-13
2lob_A	112	Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Re		1e-12
2dc2_A	103	Solution Structure Of Pdz Domain Length = 103		1e-12
4e34_A	87	Crystal Structure Of Cftr Associated Ligand (Cal) P		1e-12
1wi2_A	104	Solution Structure Of The Pdz Domain From Riken Cdn		1e-11
2vrf_A	95	Crystal Structure Of The Human Beta-2-Syntrophin Pd		1e-11
2r4h_B	112	Crystal Structure Of A C1190s Mutant Of The 6th Pdz		2e-11
1vj6_A	102	Pdz2 From Ptp-Bl In Complex With The C-Terminal Lig		2e-11
1gm1_A	94	Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94		2e-11
3qe1_A	107	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		3e-11
3qgl_A	101	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		3e-11
2fne_A	117	The Crystal Structure Of The 13th Pdz Domain Of Mpd		3e-11
3qdo_A	109	Crystal Structure Of Pdz Domain Of Sorting Nexin 27		4e-11
2qt5_A	200	Crystal Structure Of Grip1 Pdz12 In Complex With Th		7e-11
3zrt_A	199	Crystal Structure Of Human Psd-95 Pdz1-2 Length = 1		7e-11
1d5g_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		7e-11
3pdz_A	96	Solution Structure Of The Pdz2 Domain From Human Ph		7e-11
1pdr_A	99	Crystal Structure Of The Third Pdz Domain From The		8e-11
2jil_A	97	Crystal Structure Of 2nd Pdz Domain Of Glutamate Re		8e-11
1wha_A	105	Solution Structure Of The Second Pdz Domain Of Huma		8e-11
3rl7_B	107	Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc L		2e-10
2dlu_A	111	Solution Structure Of The Second Pdz Domain Of Huma		2e-10
2wl7_A	102	Crystal Structure Of The Psd93 Pdz1 Domain Length =		2e-10
3gsl_A	196	Crystal Structure Of Psd-95 Tandem Pdz Domains 1 An		3e-10
2ka9_A	189	Solution Structure Of Psd-95 Pdz12 Complexed With C		3e-10
1wfv_A	103	Solution Structure Of The Fifth Pdz Domain Of Human		3e-10
1qav_A	90	Unexpected Modes Of Pdz Domain Scaffolding Revealed		3e-10
1z87_A	263	Solution Structure Of The Split Ph-Pdz Supramodule		3e-10
1uep_A	103	Solution Structure Of The Third Pdz Domain Of Human		4e-10
1z86_A	87	Solution Structure Of The Pdz Domain Of Alpha-Syntr		5e-10
2pdz_A	86	Solution Structure Of The Syntrophin Pdz Domain In		5e-10
1zok_A	93	Pdz1 Domain Of Synapse Associated Protein 97 Length		6e-10
2eno_A	120	Solution Structure Of The Pdz Domain From Human Syn		6e-10
2jin_A	102	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		7e-10
2jik_A	101	Crystal Structure Of Pdz Domain Of Synaptojanin-2 B		7e-10
1iu0_A	91	The First Pdz Domain Of Psd-95 Length = 91		1e-09
1x6d_A	119	Solution Structures Of The Pdz Domain Of Human Inte		1e-09
1rgr_A	99	Cyclic Peptides Targeting Pdz Domains Of Psd-95: St		1e-09
1kef_A	93	Pdz1 Of Sap90 Length = 93		1e-09
1ozi_A	99	The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Len		1e-09
4amh_A	106	Influence Of Circular Permutation On The Folding Pa		2e-09
2awx_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		3e-09
3b76_A	118	Crystal Structure Of The Third Pdz Domain Of Human		4e-09
2i0i_A	85	X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The		5e-09
1q7x_A	108	Solution Structure Of The Alternatively Spliced Pdz		5e-09
2x7z_A	99	Crystal Structure Of The Sap97 Pdz2 I342w C378a Mut		6e-09
2g2l_A	105	Crystal Structure Of The Second Pdz Domain Of Sap97		7e-09
3rl8_A	105	Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc L		7e-09
2dm8_A	116	Solution Structure Of The Eighth Pdz Domain Of Huma		8e-09
4g69_A	100	Structure Of The Human Discs Large 1 Pdz2 - Adenoma		9e-09
2oqs_A	97	Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV		1e-08
2awu_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		1e-08
2i0l_A	84	X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The		1e-08
2byg_A	117	2nd Pdz Domain Of Discs Large Homologue 2 Length =		1e-08
1uez_A	101	Solution Structure Of The First Pdz Domain Of Human		2e-08
2koj_A	111	Solution Structure Of Mouse Par-3 Pdz2 (Residues 45		2e-08
2ogp_A	97	Solution Structure Of The Second Pdz Domain Of Par-		2e-08
1n7e_A	97	Crystal Structure Of The Sixth Pdz Domain Of Grip1		2e-08
2kom_A	121	Solution Structure Of Humar Par-3b Pdz2 (Residues 4		4e-08
2aww_A	105	Synapse Associated Protein 97 Pdz2 Domain Variant C		4e-08
2db5_A	128	Solution Structure Of The First Pdz Domain Of Inad-		5e-08
2o2t_A	117	The Crystal Structure Of The 1st Pdz Domain Of Mpdz		8e-08
2fe5_A	94	The Crystal Structure Of The Second Pdz Domain Of H		1e-07
2ocs_A	88	The Crystal Structure Of The First Pdz Domain Of Hu		1e-07
1qlc_A	95	Solution Structure Of The Second Pdz Domain Of Post		1e-07
2iwo_A	120	12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		1e-07
2d92_A	108	Solution Structure Of The Fifth Pdz Domain Of Inad-		2e-07
3axa_A	106	Crystal Structure Of Afadin Pdz Domain In Complex W		3e-07
3k1r_A	192	Structure Of Harmonin Npdz1 In Complex With The Sam		4e-07
1uew_A	114	Solution Structure Of The Forth Pdz Domain Of Human		4e-07
2w4f_A	97	Crystal Structure Of The First Pdz Domain Of Human		6e-07
3r68_A	95	Molecular Analysis Of The Pdz3 Domain Of Pdzk1 Leng		6e-07
2eeh_A	100	Solution Structure Of First Pdz Domain Of Pdz Domai		6e-07
2i1n_A	102	Crystal Structure Of The 1st Pdz Domain Of Human Dl		6e-07
1uit_A	117	Solution Structure Of Rsgi Ruh-006, The Third Pdz D		8e-07
1x5q_A	110	Solution Structure Of The First Pdz Domain Of Scrib		8e-07
1ueq_A	123	Solution Structure Of The First Pdz Domain Of Human		9e-07
2qg1_A	92	Crystal Structure Of The 11th Pdz Domain Of Mpdz (M		9e-07
3r69_A	89	Molecular Analysis Of The Interaction Of The Hdl-Re		1e-06
2opg_A	98	The Crystal Structure Of The 10th Pdz Domain Of Mpd		1e-06
1t2m_A	101	Solution Structure Of The Pdz Domain Of Af-6 Length		2e-06
2ehr_A	117	Solution Structure Of The Sixth Pdz Domain Of Human		2e-06
2ain_A	93	Solution Structure Of The Af-6 Pdz Domain Complexed		2e-06
2daz_A	124	Solution Structure Of The 7th Pdz Domain Of Inad-Li		2e-06
1xz9_A	101	Structure Of Af-6 Pdz Domain Length = 101		2e-06
1v62_A	117	Solution Structure Of The 3rd Pdz Domain Of Grip2 L		3e-06
1nf3_C	128	Structure Of Cdc42 In A Complex With The Gtpase-Bin		3e-06
2edz_A	114	Solution Structures Of The Pdz Domain Of Mus Muscul		3e-06
3o46_A	93	Crystal Structure Of The Pdz Domain Of Mpp7 Length		3e-06
1wi4_A	109	Solution Structure Of The Pdz Domain Of Syntaxin Bi		4e-06
1p1d_A	196	Structural Insights Into The Inter-Domain Chaperoni		5e-06
2he4_A	90	The Crystal Structure Of The Second Pdz Domain Of H		5e-06
3ch8_A	195	The Crystal Structure Of Pdz-Fibronectin Fusion Pro		6e-06
2qbw_A	195	The Crystal Structure Of Pdz-Fibronectin Fusion Pro		6e-06
1g9o_A	91	First Pdz Domain Of The Human Na+H+ EXCHANGER REGUL		6e-06
1mfg_A	95	The Structure Of Erbin Pdz Domain Bound To The Carb		6e-06
1rgw_A	85	Solution Structure Of Zasp's Pdz Domain Length = 85		7e-06
2h3l_A	103	Crystal Structure Of Erbin Pdz Length = 103		7e-06
1i92_A	91	Structural Basis Of The Nherf Pdz1-Cftr Interaction		7e-06
1gq4_A	90	Structural Determinants Of The Nherf Interaction Wi		7e-06
1gq5_A	91	Structural Determinants Of The Nherf Interaction Wi		8e-06
1wjl_A	90	Solution Structure Of Pdz Domain Of Mouse Cypher Pr		8e-06
2vph_A	100	Crystal Structure Of The Human Protein Tyrosine Pho		8e-06
1uhp_A	107	Solution Structure Of Rsgi Ruh-005, A Pdz Domain In		1e-05
2djt_A	104	Solution Structures Of The Pdz Domain Of Human Unna		1e-05
3ngh_A	106	Molecular Analysis Of The Interaction Of The Hdl Re		1e-05
2d90_A	102	Solution Structure Of The Third Pdz Domain Of Pdz D		1e-05
4f8k_A	109	Molecular Analysis Of The Interaction Between The P		1e-05
2fn5_A	94	Nmr Structure Of The Neurabin Pdz Domain (502-594)		1e-05
2cs5_A	119	Solution Structure Of Pdz Domain Of Protein Tyrosin		1e-05
3nfk_A	107	Crystal Structure Of The Ptpn4 Pdz Domain Complexed		1e-05
2edp_A	100	Solution Structure Of The Pdz Domain From Human Shr		2e-05
3hvq_C	170	Crystal Structure Of A Complex Between Protein Phos		2e-05
1x5n_A	114	Solution Structure Of The Second Pdz Domain Of Harm		2e-05
1uf1_A	128	Solution Structure Of The Second Pdz Domain Of Huma		2e-05
2kbs_A	92	Solution Structure Of Harmonin Pdz2 In Complex With		2e-05
2lc6_A	128	Solution Structure Of Par-6 Q144cL164C Length = 128		2e-05
1ry4_A	128	Nmr Structure Of The Crib-Pdz Module Of Par-6 Lengt		2e-05
2koh_A	111	Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve		2e-05
1va8_A	113	Solution Structure Of The Pdz Domain Of Pals1 Prote		2e-05
2k1z_A	104	Solution Structure Of Par-3 Pdz3 Length = 104		2e-05
2iwn_A	97	3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz		3e-05
1rzx_A	98	Crystal Structure Of A Par-6 Pdz-Peptide Complex Le		3e-05
1wg6_A	127	Solution Structure Of Pdz Domain In Protein Xp_1108		3e-05
2krg_A	216	Solution Structure Of Human Sodium HYDROGEN EXCHANG		3e-05
2kpk_A	129	Magi-1 Pdz1 Length = 129		3e-05
2i04_A	85	X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The		3e-05
1x8s_A	102	Structure Of The Par-6 Pdz Domain With A Pals1 Inte		3e-05
1um1_A	110	Solution Structure Of Rsgi Ruh-007, Pdz Domain In H		4e-05
2kjd_A	128	Solution Structure Of Extended Pdz2 Domain From Nhe		5e-05
2ozf_A	92	The Crystal Structure Of The 2nd Pdz Domain Of The		6e-05
1uju_A	111	Solution Structure Of The Fourth Pdz Domain Of Huma		6e-05
2jxo_A	98	Structure Of The Second Pdz Domain Of Nherf-1 Lengt		6e-05
1wf8_A	107	Solution Structure Of The Pdz Domain Of Spinophilin		6e-05
1ujd_A	117	Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of		8e-05
2dmz_A	129	Solution Structure Of The Third Pdz Domain Of Human		8e-05
1wf7_A	103	Solution Structure Of The Pdz Domain Of Enigma Homo		1e-04
1ihj_A	98	Crystal Structure Of The N-Terminal Pdz Domain Of I		1e-04
3pdv_A	89	Structure Of The Pdlim2 Pdz Domain In Complex With		1e-04
1v5l_A	103	Solution Structure Of Pdz Domain Of Mouse Alpha-Act		2e-04
2pa1_A	87	Structure Of The Pdz Domain Of Human Pdlim2 Bound T		2e-04
2yt8_A	94	Solution Structure Of The Pdz Domain Of Amyloid Bet		2e-04
2g5m_B	113	Spinophilin Pdz Domain Length = 113		2e-04
1i16_A	130	Structure Of Interleukin 16: Implications For Funct		2e-04
2q3g_A	89	Structure Of The Pdz Domain Of Human Pdlim7 Bound T		3e-04
2omj_A	89	Solution Structure Of Larg Pdz Domain Length = 89		3e-04
1x5r_A	112	Solution Structure Of The Fourth Pdz Domain Of Glut		3e-04
2uzc_A	88	Structure Of Human Pdlim5 In Complex With The C-Ter		3e-04
2fcf_A	103	The Crystal Structure Of The 7th Pdz Domain Of Mpdz		4e-04
3egg_C	170	Crystal Structure Of A Complex Between Protein Phos		4e-04
3egh_C	170	Crystal Structure Of A Complex Between Protein Phos		4e-04
2yuy_A	126	Solution Structure Of Pdz Domain Of Rho Gtpase Acti		4e-04
2kv8_A	83	Solution Structure Ofrgs12 Pdz Domain Length = 83		4e-04
2iwq_A	123	7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		4e-04
1v6b_A	118	Solution Structure Of The Third Pdz Domain Of Mouse		5e-04
2dls_A	93	Solution Structure Of The Pdz Domain Of Human Rho G		6e-04
1b8q_A	127	Solution Structure Of The Extended Neuronal Nitric		6e-04
1qav_B	115	Unexpected Modes Of Pdz Domain Scaffolding Revealed		8e-04
1qau_A	112	Unexpected Modes Of Pdz Domain Scaffolding Revealed		8e-04

>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7 Homolog B Length = 93

Iteration: 1
 Score =  149 bits (377), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 75/83 (90%), Positives = 77/83 (92%)
Query: 32  VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
           VVELPKTDEGLGFN+MGGKEQNSPIYISR+IPGGVADRHGGLKRGDQLLSVNGVSVEGE 
Sbjct: 8   VVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
Query: 92  HGKAVELLKQAQRSVKLVVRYTP 114
           H KAVELLK AQ SVKLVVR  P
Sbjct: 68  HEKAVELLKAAQGSVKLVVRSGP 90

>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/95 (43%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR V L K   GLGFN++GG E    I++S I+ GG AD  G L+RGDQ+LSVNG+ + G
Sbjct: 4   PRKVVLHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLRG 62
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRF 124
             H +A   LK A ++V ++ +Y P+     E + 
Sbjct: 63  ASHEQAAAALKGAGQTVTIIAQYQPEDYARFEAKI 97

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR + L K   GLGFN++GG E    I++S I+ GG AD  G L+RGD++LSVNGV++  
Sbjct: 13  PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 71
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
             H +A   LK+A +SV +V +Y P+     E
Sbjct: 72  ATHEQAAAALKRAGQSVTIVAQYRPEEYSRFE 103

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 76.3 bits (186), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR + L K   GLGFN++GG E    I++S I+ GG AD  G L+RGD++LSVNGV++  
Sbjct: 16  PRKIILHKGSTGLGFNIVGG-EDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
             H +A   LK+A +SV +V +Y P+     E
Sbjct: 75  ATHEQAAAALKRAGQSVTIVAQYRPEEYSRFE 106

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR + + +   GLGFN++GG E    I+IS I+ GG AD  G L++GDQ+LSVNGV +  
Sbjct: 308 PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 366
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQR 128
             H +A   LK A ++V ++ +Y P+     E +    R
Sbjct: 367 ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLR 405

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR + + +   GLGFN++GG E    I+IS I+ GG AD  G L++GDQ+LSVNGV +  
Sbjct: 15  PRRIVIHRGSTGLGFNIIGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
             H +A   LK A ++V ++ +Y P+     E
Sbjct: 74  ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 105

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR + + +   GLGFN++GG E    I+IS I+ GG AD  G L++GDQ+LSVNGV +  
Sbjct: 12  PRRIVIHRGSTGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 70
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
             H +A   LK A ++V ++ +Y P+     E +
Sbjct: 71  ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR + + +   GLGFN++GG E    I+IS I+ GG AD  G L++GDQ+LSVNGV +  
Sbjct: 15  PRRIVIHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
             H +A   LK A ++V ++ +Y P+     E
Sbjct: 74  ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 105

>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR + + +   GLGFN++GG E    I+IS I+ GG AD  G L++GDQ+LSVNGV +  
Sbjct: 7   PRRIVIHRGSTGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 65
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
             H +A   LK A ++V ++ +Y P+     E
Sbjct: 66  ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 97

>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 90

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 33  VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
           + L + + G GF ++GG E   PIYI  I+P G AD  G L+ GD+L+SV+G  V G+ H
Sbjct: 6   IFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSH 65
Query: 93  GKAVELLKQA--QRSVKLVVRYT 113
              V+L++QA  Q  V L VR T
Sbjct: 66  QLVVQLMQQAAKQGHVNLTVRQT 88

>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane Regulator-Associated Ligand) Length = 112

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           +V+ L +  EGLG ++ GGKE   PI IS I PG  ADR GGL  GD +L+VNGV++   
Sbjct: 30  KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 89
Query: 91  DHGKAVELLKQAQRSVKLVVRYT 113
            H +AV +L Q +  ++  V Y 
Sbjct: 90  KHKEAVTILSQQRGEIEFEVVYV 112

>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain Length = 103

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           +V+ L +  EGLG ++ GGKE   PI IS I PG  ADR GGL  GD +L+VNGV++   
Sbjct: 12  KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 71
Query: 91  DHGKAVELLKQAQRSVKLVVRYT 113
            H +AV +L Q +  ++  V Y 
Sbjct: 72  KHKEAVTILSQQRGEIEFEVVYV 94

>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz Domain Bound To Ical36 (Ansrwptsii) Peptide Length = 87

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 51/83 (61%)
Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           +V+ L +  EGLG ++ GGKE   PI IS I PG  ADR GGL  GD +L+VNGV++   
Sbjct: 5   KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 64
Query: 91  DHGKAVELLKQAQRSVKLVVRYT 113
            H +AV +L Q +  ++  V Y 
Sbjct: 65  KHKEAVTILSQQRGEIEFEVVYV 87

>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna 2700099c19 Length = 104

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 30  PRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           PR+V L K     LGFN+ GGK     I+IS++IP   A R  GL+ GDQ+L+VN V  +
Sbjct: 16  PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHR-AGLQEGDQVLAVNDVDFQ 74
Query: 89  GEDHGKAVELLKQAQRSVKLVVRY 112
             +H KAVE+LK A R + + VR+
Sbjct: 75  DIEHSKAVEILKTA-REISMRVRF 97

>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz Domain Length = 95

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 41  GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
           GLG ++ GG+E   PI IS+I PG  AD+   L+ GD +LSVNG  +    H +AV+ LK
Sbjct: 16  GLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALK 75
Query: 101 QAQRSVKLVVRYTPKV 116
           +A + V L V++  +V
Sbjct: 76  RAGKEVLLEVKFIREV 91

>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain Of Human Membrane Associated Guanylate Kinase Length = 112

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 32  VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
            VEL +  +G GF++ GG+E N  +Y+ R+   G A+R G ++ GD++L +NG + +   
Sbjct: 27  TVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMK 86
Query: 92  HGKAVELLKQAQRSVKLVVR 111
           H +A+EL+K   R V+L ++
Sbjct: 87  HSRAIELIKNGGRRVRLFLK 106

>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand From The Apc Protein Length = 102

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 33  VELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           VEL KTD  LG +V GG   +     IY+  IIP G A+  G + +GD++L+VNGVS+EG
Sbjct: 16  VELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 75
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
             H +AVE L+   + V L++
Sbjct: 76  ATHKQAVETLRNTGQVVHLLL 96

>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl Length = 94

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 33  VELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           VEL KTD  LG +V GG   +     IY+  IIP G A+  G + +GD++L+VNGVS+EG
Sbjct: 8   VELAKTDGSLGISVTGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEG 67
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
             H +AVE L+   + V L++
Sbjct: 68  ATHKQAVETLRNTGQVVHLLL 88

>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27) In Complex With The Eseskv Peptide Corresponding To The C-Terminal Tail Of Girk3 Length = 101

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 13/93 (13%)
Query: 30  PRVVELPKTDEGLGFNVMG-----------GKEQNSPI-YISRIIPGGVADRHGGLKRGD 77
           PRVV + K++ G GFNV G             E  +P+ ++S ++PGG ADR  G+++GD
Sbjct: 7   PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADR-AGVRKGD 65
Query: 78  QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
           ++L VNGV+VEG  H + V+L++  ++ + L V
Sbjct: 66  RILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98

>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 3/83 (3%)
Query: 31  RVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + + L +  +GLGF+++GG      + PIY+  +   G A   G LKRGDQ+++VNG S+
Sbjct: 27  KSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSL 86
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           EG  H +AV +LK+ + +V L+V
Sbjct: 87  EGVTHEEAVAILKRTKGTVTLMV 109

>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27 (Snx27) Fused To The Gly-Gly Linker Followed By C-Terminal (Eseskv) Of Girk3 Length = 109

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 13/93 (13%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQ-------NSPIY-----ISRIIPGGVADRHGGLKRGD 77
           PRVV + K++ G GFNV G   +       N  +Y     +S ++PGG ADR  G+++GD
Sbjct: 7   PRVVRIVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADR-AGVRKGD 65
Query: 78  QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
           ++L VNGV+VEG  H + V+L++  ++ + L V
Sbjct: 66  RILEVNGVNVEGATHKQVVDLIRAGEKELILTV 98

>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1 Peptide Length = 200

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Query: 31  RVVELPKTDEG--LGFNVMGG----KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           R VE+    EG   GF + GG    + ++ P+ I+ + PGG ADR G +K GD+LLSV+G
Sbjct: 106 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDG 165
Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
           + + G  H +A+ +LKQ  +   L++ Y   V++
Sbjct: 166 IRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMD 199

>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2 Length = 199

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 12/112 (10%)
Query: 27  HAHPR------VVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKR 75
           H HPR       + L + + GLGF++ GG +      +  I+I++IIPGG A + G L+ 
Sbjct: 4   HHHPRGSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRV 63
Query: 76  GDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL-VVRYTPKVLEEMEMRFDK 126
            D +L VN V V    H  AVE LK+A   V+L V+R  P   + ME++  K
Sbjct: 64  NDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 115

>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Complexed With A Peptide Length = 96

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 33  VELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           VEL K D  LG +V GG   +     IY+  +IP G A+  G + +GD++L+VNGVS+EG
Sbjct: 9   VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
             H +AVE L+   + V L++
Sbjct: 69  ATHKQAVETLRNTGQVVHLLL 89

>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human Phosphatase Hptp1e Length = 96

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 33  VELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           VEL K D  LG +V GG   +     IY+  +IP G A+  G + +GD++L+VNGVS+EG
Sbjct: 9   VELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEG 68
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
             H +AVE L+   + V L++
Sbjct: 69  ATHKQAVETLRNTGQVVHLLL 89

>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human Homolog Of Discs Large Protein Length = 99

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR V L +   GLGFN++GG E    I+IS I+ GG AD  G L++GD+++SVN V +  
Sbjct: 8   PRKVVLHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLRA 66
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPK 115
             H +A   LK A ++V +V +Y P+
Sbjct: 67  ASHEQAAAALKNAGQAVTIVAQYRPE 92

>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor Interacting Protein-1 (Grip1) Length = 97

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 31  RVVELPKTDEG--LGFNVMGG----KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           R VE+    EG   GF + GG    + ++ P+ I+ + PGG ADR G +K GD+LLSV+G
Sbjct: 3   RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDG 62
Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVVRY 112
           + + G  H +A+ +LKQ  +   L++ Y
Sbjct: 63  IRLLGTTHAEAMSILKQCGQEAALLIEY 90

>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 105

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 32  VVELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
           V  L +++ GLGF++ GGK        ++ I++SRI  GG A R G L+ GD++LS+NGV
Sbjct: 10  VACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGV 69
Query: 86  SVEGEDHGKAVELLKQAQRSVKLVV 110
            V    H  AV LL  A  ++ L++
Sbjct: 70  DVTEARHDHAVSLLTAASPTIALLL 94

>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc Length = 107

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L + + GLGF++ GG +      +S I+I++II GG A + G L+  D +L VN V V
Sbjct: 15  ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDV 74
Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEM 120
               H KAVE LK+A   V+L V+    V E++
Sbjct: 75  RDVTHSKAVEALKEAGSIVRLYVKRRKPVSEKI 107

>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad- Like Protein Length = 111

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 27  HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
             H   VEL     GLGF ++GGK   S + +  I+PGG+ADR G L+ GD +L + G +
Sbjct: 13  WGHVEEVELINDGSGLGFGIVGGK--TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTN 70
Query: 87  VEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
           V+G    +  ++L+    SV+++V   P 
Sbjct: 71  VQGMTSEQVAQVLRNCGNSVRMLVARDPA 99

>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain Length = 102

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L + + GLGF++ GG +      +  I+I++IIPGG A   G L+  D +L VN V V
Sbjct: 13  ITLERGNSGLGFSIAGGTDNPHIGDDPGIFITKIIPGGAAAEDGRLRVNDCILRVNEVDV 72
Query: 88  EGEDHGKAVELLKQAQRSVKLVVR 111
               H KAVE LK+A   V+L VR
Sbjct: 73  SEVSHSKAVEALKEAGSIVRLYVR 96

>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2 Length = 196

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L + + GLGF++ GG +      +  I+I++IIPGG A + G L+  D +L VN V V
Sbjct: 9   ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 68
Query: 88  EGEDHGKAVELLKQAQRSVKL-VVRYTPKVLEEMEMRFDK 126
               H  AVE LK+A   V+L V+R  P   + ME++  K
Sbjct: 69  REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 108

>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin Peptide Length = 189

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/100 (38%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L + + GLGF++ GG +      +  I+I++IIPGG A + G L+  D +L VN V V
Sbjct: 6   ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 88  EGEDHGKAVELLKQAQRSVKL-VVRYTPKVLEEMEMRFDK 126
               H  AVE LK+A   V+L V+R  P   + ME++  K
Sbjct: 66  REVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIK 105

>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human Membrane Associated Guanylate Kinase Inverted-2 (Kiaa0705 Protein) Length = 103

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 32  VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
            V++ K  +G GF++ GG+E    +Y+ R+   G A R+G ++ GDQ++ +NG S     
Sbjct: 14  TVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMT 73
Query: 92  HGKAVELLKQAQRSVKLVVR 111
           H +A+EL+K   R V+L+++
Sbjct: 74  HARAIELIKSGGRRVRLLLK 93

>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By Structure Of Nnos-Syntrophin Complex Length = 90

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 26  GHAHPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           G    R V + K D G LG ++ GG+E   PI IS+I  G  AD+   L  GD +LSVNG
Sbjct: 1   GSLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60
Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVVRY 112
             +    H +AV+ LK+  + V L V+Y
Sbjct: 61  EDLSSATHDEAVQALKKTGKEVVLEVKY 88

>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of Alpha- Syntrophin Length = 263

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 31  RVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           R V + K D G LG ++ GG+E   PI IS+I  G  AD+   L  GD +LSVNG  +  
Sbjct: 79  RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 138
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKV 116
             H +AV+ LK+  + V L V+Y  +V
Sbjct: 139 ATHDEAVQALKKTGKEVVLEVKYMKEV 165

>pdb|1UEP|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 103

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 33  VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
           V L + + G GF ++GG E   PI I  +I  G ADR G L  GD+L+ V+G+ V G+ H
Sbjct: 13  VHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72
Query: 93  GKAVELLKQAQRS--VKLVVR 111
              ++L+  A R+  V L VR
Sbjct: 73  RYVIDLMHHAARNGQVNLTVR 93

>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin Length = 87

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 31  RVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           R V + K D G LG ++ GG+E   PI IS+I  G  AD+   L  GD +LSVNG  +  
Sbjct: 2   RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 61
Query: 90  EDHGKAVELLKQAQRSVKLVVRY 112
             H +AV+ LK+  + V L V+Y
Sbjct: 62  ATHDEAVQALKKTGKEVVLEVKY 84

>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex With The Peptide Gvkeslv, Nmr, 15 Structures Length = 86

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 31  RVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           R V + K D G LG ++ GG+E   PI IS+I  G  AD+   L  GD +LSVNG  +  
Sbjct: 2   RRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSS 61
Query: 90  EDHGKAVELLKQAQRSVKLVVRY 112
             H +AV+ LK+  + V L V+Y
Sbjct: 62  ATHDEAVQALKKTGKEVVLEVKY 84

>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97 Length = 93

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L + + GLGF++ GG +      +S I+I++II GG A + G L+  D +L VN   V
Sbjct: 5   ITLERGNSGLGFSIAGGTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADV 64
Query: 88  EGEDHGKAVELLKQAQRSVKLVVR 111
               H KAVE LK+A   V+L V+
Sbjct: 65  RDVTHSKAVEALKEAGSIVRLYVK 88

>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human Synaptojanin 2 Binding Protein Length = 120

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L +   GLGFN++GG +Q     +S IY+SRI   G A   G L+ GD++LSVNG  +
Sbjct: 21  INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 80
Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
           +   H  AV+L + A  +V L V++  +V
Sbjct: 81  KNLLHQDAVDLFRNAGYAVSLRVQHRLQV 109

>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 102

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L +   GLGFN++GG +Q     +S IY+SRI   G A   G L+ GD++LSVNG  +
Sbjct: 13  INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 72
Query: 88  EGEDHGKAVELLKQAQRSVKLVVRY 112
           +   H  AV+L + A  +V L V++
Sbjct: 73  KNLLHQDAVDLFRNAGYAVSLRVQH 97

>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding Protein Length = 101

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L +   GLGFN++GG +Q     +S IY+SRI   G A   G L+ GD++LSVNG  +
Sbjct: 11  INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 70
Query: 88  EGEDHGKAVELLKQAQRSVKLVVRY 112
           +   H  AV+L + A  +V L V++
Sbjct: 71  KNLLHQDAVDLFRNAGYAVSLRVQH 95

>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95 Length = 91

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L + + GLGF++ GG +      +  I+I++IIPGG A + G L+  D +L VN V V
Sbjct: 6   ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 65
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
               H  AVE LK+A   V+L V
Sbjct: 66  REVTHSAAVEALKEAGSIVRLYV 88

>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human Interleukin- 16 Length = 119

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 57/85 (67%), Gaps = 4/85 (4%)
Query: 41  GLGFNVMGGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
           GLGF++ GG + +N  I + R+ P G+A + G +++G+++LS+NG S++G  H  A+ +L
Sbjct: 28  GLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAIL 87
Query: 100 KQA---QRSVKLVVRYTPKVLEEME 121
           +QA   +++V +  + TP+ + ++ 
Sbjct: 88  RQAREPRQAVIVTRKLTPEAMPDLN 112

>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95: Structural Basis For Enhanced Affinity And Enzymatic Stability Length = 99

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L + + GLGF++ GG +      +  I+I++IIPGG A + G L+  D +L VN V V
Sbjct: 5   ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
               H  AVE LK+A   V+L V
Sbjct: 65  REVTHSAAVEALKEAGSIVRLYV 87

>pdb|1KEF|A Chain A, Pdz1 Of Sap90 Length = 93

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L + + GLGF++ GG +      +  I+I++IIPGG A + G L+  D +L VN V V
Sbjct: 5   ITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDV 64
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
               H  AVE LK+A   V+L V
Sbjct: 65  REVTHSAAVEALKEAGSIVRLYV 87

>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl Length = 99

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 33  VELPKTDEGLGFNVM-----GGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           VEL KTD  LG +V      GG   +     IY+  IIP G A+  G + +GD++L+VNG
Sbjct: 8   VELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNG 67
Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVV 110
           VS+EG  H +AVE L+   + V L++
Sbjct: 68  VSLEGATHKQAVETLRNTGQVVHLLL 93

>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway Of A Pdz Domain Length = 106

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 27  HAHPRVVELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLS 81
           H H  +V  P+  +GLGF++ GG   Q+ P    IY+++II GG A + G L+ GD+LL+
Sbjct: 2   HHHHHLV--PRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLA 59
Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDK 126
           VN V++E   H +AV  LK     V L V       + ME++  K
Sbjct: 60  VNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGSGEKIMEIKLIK 104

>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s Length = 105

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG   Q+ P    IY+++II GG A + G L+ GD+LL+VN VS+
Sbjct: 7   IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSL 66
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           E   H +AV  LK     V L V
Sbjct: 67  EEVTHEEAVTALKNTSDFVYLKV 89

>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human Ligand-of-numb Protein-x (lnx1) In Complex With The C-terminal Peptide From The Coxsackievirus And Adenovirus Receptor Length = 118

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 29  HPRVVELPKT-DEGLGFNVMGG---KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           H +VV + K   E LG  V GG   +E + PIY+  + PGGV  R G +K GD LL+V+G
Sbjct: 24  HEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDG 83
Query: 85  VSVEGEDHGKAVELLKQAQRSVKL 108
           V +      +AV LLK+   S+ L
Sbjct: 84  VELTEVSRSEAVALLKRTSSSIVL 107

>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 29  HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
            PR V L +   GLGFN++GG E    I+IS I+ GG AD  G L++GD+++SVN V + 
Sbjct: 4   EPRKVVLHRGSTGLGFNIVGG-EDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLR 62
Query: 89  GEDHGKAVELLKQAQRSVKLVVR 111
              H +A   LK A ++V +V +
Sbjct: 63  AASHEQAAAALKNAGQAVTIVAQ 85

>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2 Domain (Pdz2b) Of Ptp-Bas (Hptp1e) Length = 108

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 33  VELPKTDEGLGFNVM-----GGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           VEL K D  LG +V      GG   +     IY+  +IP G A+  G + +GD++L+VNG
Sbjct: 13  VELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 72
Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVV 110
           VS+EG  H +AVE L+   + V L++
Sbjct: 73  VSLEGATHKQAVETLRNTGQVVHLLL 98

>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant Protein Domain Length = 99

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG   Q+ P    IY+++II GG A + G L+ GD+LL+VN V++
Sbjct: 12  IKLIKGPKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVAL 71
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           E   H +AV  LK     V L V
Sbjct: 72  EEVTHEEAVTALKNTSDFVYLKV 94

>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In Complex With A Glur-A C-Terminal Peptide Length = 105

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG   Q+ P    IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 7   IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 66
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           E   H +AV  LK     V L V
Sbjct: 67  EEVTHEEAVTALKNTSDFVYLKV 89

>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc Length = 105

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG   Q+ P    IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 15  IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 74
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           E   H +AV  LK     V L V
Sbjct: 75  EEVTHEEAVTALKNTSDFVYLKV 97

>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad- Like Protein Length = 116

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 32  VVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           ++E+ K   GLG +++GGK+   + I I  +   G A R G L  GDQ+L VNGV +   
Sbjct: 20  IIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNS 79
Query: 91  DHGKAVELLKQAQRSVKLVV 110
            H +A+  L+Q  + V+LVV
Sbjct: 80  SHEEAITALRQTPQKVRLVV 99

>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous Polyposis Coli Cytoskeletal Polarity Complex Length = 100

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG   Q+ P    IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 13  IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 72
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           E   H +AV  LK     V L V
Sbjct: 73  EEVTHEEAVTALKNTSDFVYLKV 95

>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18 Papillomavirus E6 Peptide Length = 97

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG   Q+ P    IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 3   IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCL 62
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           E   H +AV  LK     V L V
Sbjct: 63  EEVTHEEAVTALKNTSDFVYLKV 85

>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g Length = 105

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG   Q+ P    IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 7   IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGL 66
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           E   H +AV  LK     V L V
Sbjct: 67  EEVTHEEAVTALKNTSDFVYLKV 89

>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C- Terminal Peptide Of Hpv18 E6. Length = 84

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG   Q+ P    IY+++II GG A + G L+ GD+LL+VN V +
Sbjct: 2   IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCL 61
Query: 88  EGEDHGKAVELLKQAQRSVKL 108
           E   H +AV  LK     V L
Sbjct: 62  EEVTHEEAVTALKNTSDFVYL 82

>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2 Length = 117

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG   Q+ P    IY+++II GG A + G L+ GD+LL VN  S+
Sbjct: 28  IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           E   H +AV +LK     V L V
Sbjct: 88  EEVTHEEAVAILKNTSEVVYLKV 110

>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Kiaa1526 Protein Length = 101

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 31  RVVEL--PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           R+V L   K  EGLGF++ GG E    IY+S + PG +A++  GL+ GDQ+L VN  S+ 
Sbjct: 10  RLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLA 68
Query: 89  GEDHGKAVELLKQAQRSV 106
              H +AV+ LK +++ V
Sbjct: 69  RVTHAEAVKALKGSKKLV 86

>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558) Length = 111

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 33  VELPKTDEGLGFNV------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
           ++L K  EGLGF++      +GG   ++PIY+  I+P G A + G LK GD+L+ VNGV 
Sbjct: 15  IQLKKGTEGLGFSITSRDVTIGG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 71
Query: 87  VEGEDHGKAVELLKQAQR--SVKLVV 110
           + G+   + V LL+  +   +V L+V
Sbjct: 72  LAGKSQEEVVSLLRSTKMEGTVSLLV 97

>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3 Length = 97

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 33  VELPKTDEGLGFNV------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
           ++L K  EGLGF++      +GG   ++PIY+  I+P G A + G LK GD+L+ VNGV 
Sbjct: 9   IQLKKGTEGLGFSITSRDVTIGG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 65
Query: 87  VEGEDHGKAVELLKQAQR--SVKLVV 110
           + G+   + V LL+  +   +V L+V
Sbjct: 66  LAGKSQEEVVSLLRSTKMEGTVSLLV 91

>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 Length = 97

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 32  VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
            VEL +    LG  + G +E   PI IS +  GG+A+R G +  GD++L++N  S++G+ 
Sbjct: 8   TVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKP 67
Query: 92  HGKAVELLKQAQRSVKLVVR 111
             +A+ LL+ A  +V L ++
Sbjct: 68  LSEAIHLLQMAGETVTLKIK 87

>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549) Length = 121

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 11/86 (12%)
Query: 33  VELPKTDEGLGFNV------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
           ++L K  EGLGF++      +GG   ++PIY+  I+P G A + G LK GD+L+ VNGV 
Sbjct: 34  IQLKKGTEGLGFSITSRDVTIGG---SAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 90
Query: 87  VEGEDHGKAVELLKQAQR--SVKLVV 110
           + G+   + V LL+  +   +V L+V
Sbjct: 91  LVGKSQEEVVSLLRSTKMEGTVSLLV 116

>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g With C-Terminal Glur-A Peptide Length = 105

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG   Q+ P    IY++ I+ GG A + G L+ GD+LL+VN V +
Sbjct: 7   IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGL 66
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           E   H +AV  LK     V L V
Sbjct: 67  EEVTHEEAVTALKNTSDFVYLKV 89

>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like Protein Length = 128

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 33  VELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           +E P T  GLGF+V+  + QN     I++  + PG VADR   LK  DQ+L++N   ++ 
Sbjct: 31  IERPSTG-GLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQ 89
Query: 90  E-DHGKAVELLKQAQRSVKLVVRYTP 114
              H +A+ LL+Q   S++L+V   P
Sbjct: 90  NISHQQAIALLQQTTGSLRLIVAREP 115

>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz Length = 117

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
Query: 29  HPRVVELPKTDEG-LGFNVMGGKEQNSP---IYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           H  V EL K   G LGF+V+G + +N     I++  I  G VA R G LK  DQ+L++NG
Sbjct: 20  HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79
Query: 85  VSVEGE-DHGKAVELLKQAQRSVKLVV 110
            +++    H +A+ +L++A+ +V+LV+
Sbjct: 80  QALDQTITHQQAISILQKAKDTVQLVI 106

>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Dlg3 Length = 94

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           V L K  +GLGF++ GG   Q+ P    IYI++II GG A + G L+ GD+LL+VN  ++
Sbjct: 7   VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           +   H +AV  LK     V L V
Sbjct: 67  QDVRHEEAVASLKNTSDMVYLKV 89

>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human Nherf-2 (slc9a3r2) Length = 88

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  L + ++G GF++ G K +    +I R+ PG  A+    L+ GD+L+ VNGV+VEG
Sbjct: 2   PRLCRLVRGEQGYGFHLHGEKGRRGQ-FIRRVEPGSPAE-AAALRAGDRLVEVNGVNVEG 59
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           E H + V+ +K  +   +L+V
Sbjct: 60  ETHHQVVQRIKAVEGQTRLLV 80

>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of Postsynaptic Density-95 Length = 95

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 33  VELPKTDEGLGFNVMGG-KEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG   Q+ P    IY+++II GG A + G L+ GD++L+VN V +
Sbjct: 7   IKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGL 66
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           E   H  AV  LK     V L V
Sbjct: 67  EDVMHEDAVAALKNTYDVVYLKV 89

>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 120

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 31  RVVELPK--TDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
           R VE+ K  TD  LG ++ GG      + PI+I+ + P GVA +   L+ GD+++++ G 
Sbjct: 26  RTVEMKKGPTDS-LGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGT 84
Query: 86  SVEGEDHGKAVELLKQAQRSVKLVV 110
           S EG  H +AV LLK A  S+++ V
Sbjct: 85  STEGMTHTQAVNLLKNASGSIEMQV 109

>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like Protein Length = 108

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 31  RVVELPKTDEGLGFNVMGGKEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
           ++VEL K  +GLGF+++  ++   P    I I  ++  GVA+R GGL  GD+L+SVN   
Sbjct: 17  KIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYC 76
Query: 87  VEGEDHGKAVELLKQ 101
           ++     +AVE+LK 
Sbjct: 77  LDNTSLAEAVEILKA 91

>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The C-Terminal Peptide From Nectin-3 Length = 106

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 27  HAHPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
           H  P ++ +  K   G+G +++  K   +    IY+  ++ GG AD  G L  GDQLLSV
Sbjct: 7   HKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSV 66
Query: 83  NGVSVEGEDHGKAVELLKQAQRSVKLVV 110
           +G S+ G    +A EL+ +    V L V
Sbjct: 67  DGRSLVGLSQERAAELMTRTSSVVTLEV 94

>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of Sans Length = 192

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 40  EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
           EGLG +V GG E    ++IS +I GG AD   GL+ GD+++ +NG S+    H + + L+
Sbjct: 96  EGLGLSVRGGLEFGCGLFISHLIKGGQADS-VGLQVGDEIVRINGYSISSCTHEEVINLI 154
Query: 100 KQAQRSVKLVVRY 112
           +  +++V + VR+
Sbjct: 155 R-TEKTVSIKVRH 166

>pdb|1UEW|A Chain A, Solution Structure Of The Forth Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 114

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 37  KTDEGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           K +EG GF ++        G     P  I RII G  ADR   LK GD++L+VNG S+  
Sbjct: 19  KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIIN 78
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPK 115
             H   V+L+K A  SV L  R  P+
Sbjct: 79  MPHADIVKLIKDAGLSVTL--RIIPQ 102

>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1 Length = 97

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 41  GLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 94
           GLG ++ GGK        +  I+ISR+   G A R  G++ GD+LL VNGV+++G +H +
Sbjct: 15  GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDKLLEVNGVALQGAEHHE 73
Query: 95  AVELLKQAQRSVKLVV 110
           AVE L+ A  +V++ V
Sbjct: 74  AVEALRGAGTAVQMRV 89

>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1 Length = 95

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 29  HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
            PRVV + K   G GF +  G EQ   I I  I PG  A+   GLK  D +++VNG SVE
Sbjct: 5   QPRVVVIKKGSNGYGFYLRAGPEQKGQI-IKDIEPGSPAEA-AGLKNNDLVVAVNGKSVE 62
Query: 89  GEDHGKAVELLKQAQRSVKLVV 110
             DH   VE++++      L+V
Sbjct: 63  ALDHDGVVEMIRKGGDQTTLLV 84

>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain Containing Protein 7 Length = 100

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 42  LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
           LGF+V GG E    I++S++  G  A+R  GL  GD++  VNG+S+E    G AV++L  
Sbjct: 24  LGFSVRGGSEHGLGIFVSKVEEGSSAER-AGLCVGDKITEVNGLSLESTTMGSAVKVLTS 82
Query: 102 AQR 104
           + R
Sbjct: 83  SSR 85

>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3 Length = 102

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 33  VELPKTDEGLGFNVMGGKEQ----NSP-IYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L + + GLGF++ GG +     + P I+I++IIPGG A   G L   D +L VN V V
Sbjct: 8   IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67
Query: 88  EGEDHGKAVELLKQA 102
               H +AVE LK+A
Sbjct: 68  SEVVHSRAVEALKEA 82

>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain Of Hdlg5 (Kiaa0583) Protein [homo Sapiens] Length = 117

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR V++ K  E LG +++ G++    IY+S++  G +A +  GL+ GDQLL  NG+++  
Sbjct: 20  PRHVKVQKGSEPLGISIVSGEK--GGIYVSKVTVGSIAHQ-AGLEYGDQLLEFNGINLRS 76
Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKV 116
               +A  ++ Q   ++ ++ +Y P V
Sbjct: 77  ATEQQARLIIGQQCDTITILAQYNPHV 103

>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble Homolog Protein (Hscrib) Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 7/76 (9%)
Query: 41  GLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 94
           GLG ++ GGK        +  I+ISR+   G A R G ++ GD+LL VNGV+++G +H +
Sbjct: 27  GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHHE 85
Query: 95  AVELLKQAQRSVKLVV 110
           AVE L+ A  +V++ V
Sbjct: 86  AVEALRGAGTAVQMRV 101

>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein) Length = 123

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 35  LPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK 94
           L K++ G GF ++GG E +  + +  +IP G A + G ++ GD ++ +N V V G  H  
Sbjct: 25  LKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD 84
Query: 95  AVELLKQAQ--RSVKLVV 110
            V+L +     +SV LV+
Sbjct: 85  VVKLFQSVPIGQSVNLVL 102

>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1) Length = 92

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 40  EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
           +GLG +++G K  ++ +++S I+ GG+AD  G L +GDQ+L VNG  V          LL
Sbjct: 16  KGLGLSIVG-KRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALL 74
Query: 100 KQAQRSVKL 108
           K +  +V L
Sbjct: 75  KCSLGTVTL 83

>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1 Length = 89

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PRVV + K   G GF +  G EQ   I I  I PG  A+   GLK  D +++VNG SVE 
Sbjct: 3   PRVVVIKKGSNGYGFYLRAGPEQKGQI-IKDIEPGSPAE-AAGLKNNDLVVAVNGKSVEA 60
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
            DH   VE++++      L+V
Sbjct: 61  LDHDGVVEMIRKGGDQTTLLV 81

>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz Length = 98

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 32  VVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
            +E+ K   GLG +++GG +     I I  +   G A + G L  GDQ+L VNG+ +   
Sbjct: 7   TIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKA 66
Query: 91  DHGKAVELLKQAQRSVKLVV 110
            H +A+ +L+Q  + V+L +
Sbjct: 67  THDEAINVLRQTPQRVRLTL 86

>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6 Length = 101

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 29  HPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
            P ++ +  K   G+G +++  K   +    IY+  ++ GG AD  G L  GDQLLSV+G
Sbjct: 3   EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 85  VSVEGEDHGKAVELLKQAQRSVKL 108
            S+ G    +A EL+ +    V L
Sbjct: 63  RSLVGLSQERAAELMTRTSSVVTL 86

>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad- Like Protein Length = 117

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 13/101 (12%)
Query: 30  PRVVELPKT-DEGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQL 79
           PR+VE+ +  +  LG +++GG+         E+   I+I +++    A +   LK GD++
Sbjct: 16  PRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKI 75
Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR---YTPKVL 117
           L V+GV ++   H +AVE +K A   V  +V+    TP+V+
Sbjct: 76  LEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSSTPRVI 116

>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With The C-Terminal Peptide From The Bcr Protein Length = 93

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 29  HPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
            P ++ +  K   G+G +++  K   +    IY+  ++ GG AD  G L  GDQLLSV+G
Sbjct: 3   EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 85  VSVEGEDHGKAVELLKQAQRSVKL 108
            S+ G    +A EL+ +    V L
Sbjct: 63  RSLVGLSQERAAELMTRTSSVVTL 86

>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like Protein Length = 124

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 32  VVELPKTDEGLGFNVMGGKEQNS-PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           ++EL K   GLG ++ G K+++   I++  I P G A   G ++ GD+LL +N   + G 
Sbjct: 28  IIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGR 87
Query: 91  DHGKAVELLKQAQRSVKLVVRYTPKVLEEM 120
            H  A  ++K A   VKLV       + +M
Sbjct: 88  SHQNASAIIKTAPSKVKLVFIRNEDAVNQM 117

>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain Length = 101

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 29  HPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
            P ++ +  K   G+G +++  K   +    IY+  ++ GG AD  G L  GDQLLSV+G
Sbjct: 9   EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVV 110
            S+ G    +A EL+ +    V L V
Sbjct: 69  RSLVGLSQERAAELMTRTSSVVTLEV 94

>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2 Length = 117

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 30  PRVVELPKTD-EGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           P +VE+ KT    LG ++     +N S I I RI P  V DR G L  GD +LS++G S+
Sbjct: 16  PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75
Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTPK 115
           E     +A +LL      V+L +   P+
Sbjct: 76  EHCSLLEATKLLASISEKVRLEILPVPQ 103

>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 128

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 38  TDEGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           T++ LGF +  G          E+   I+ISR++PGG+A   G L   D++L VNG+ V 
Sbjct: 40  TEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVS 99
Query: 89  GEDHGKAVELLKQAQRSVKLVVR 111
           G+   +  +++    R++ + VR
Sbjct: 100 GKSLDQVTDMMIANSRNLIITVR 122

>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz Domain-Containing Protein 1 Length = 114

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 29  HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           +PR  +L K  EG  +      E+++  ++ R+I  G      GL  GD++L +NGV V+
Sbjct: 13  NPRECKLSKQ-EGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVD 71
Query: 89  GEDHGKAVELLKQAQRSVKLVV 110
            E+H + VEL++++  SV L+V
Sbjct: 72  KEEHAQVVELVRKSGNSVTLLV 93

>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7 Length = 93

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 26  GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
           G    +++ L K  E LG  +    EQ   I ++RI  GG ADR G +  GD+L  VNG+
Sbjct: 1   GSDSVKIIRLVKNREPLGATIKK-DEQTGAIIVARIXRGGAADRSGLIHVGDELREVNGI 59
Query: 86  SVEGEDHGKAVELLKQAQRSVKL 108
            VE +   + +++L Q+Q ++  
Sbjct: 60  PVEDKRPEEIIQILAQSQGAITF 82

>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding Protein 4 Length = 109

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 31  RVVELPKTDEGLGFNVMGGKEQNSP--IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           RV+ + K + GLG  ++GG  +N    +YI  +IPGG   + G LK GDQL+S+N  S+ 
Sbjct: 17  RVITVTK-ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMI 75
Query: 89  GEDHGKAVELLKQAQ 103
           G    +A  ++ +A+
Sbjct: 76  GVSFEEAKSIITRAK 90

>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of Tandem Pdz Domains In Glutamate Receptor Interacting Proteins Length = 196

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 33  VELPK---TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           V+LPK    + G+  +    ++   P+ IS I  G VA R G L+ GD+LL+++ + ++ 
Sbjct: 111 VKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDS 170
Query: 90  EDHGKAVELLKQAQRSVKLVVR 111
                AV++L+Q +  VKL +R
Sbjct: 171 CSMEDAVQILQQCEDLVKLKIR 192

>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding Motif Length = 90

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  L K  +G GFN+   K +    YI  + PG  A R  GL+  D+L+ VNG +VEG
Sbjct: 5   PRLCHLRKGPQGYGFNLHSDKSRPGQ-YIRSVDPGSPAAR-SGLRAQDRLIEVNGQNVEG 62
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
             H + V  +K  +   +L+V
Sbjct: 63  LRHAEVVASIKAREDEARLLV 83

>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein Length = 195

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query: 42  LGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93
           LGF++ GG        +  +  I+++R+ P G A +   L+ GD+++  NG S    +HG
Sbjct: 5   LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINIEHG 62
Query: 94  KAVELLKQAQRSVKLVV 110
           +AV LLK  Q +V+L++
Sbjct: 63  QAVSLLKTFQNTVELII 79

>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein Length = 195

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 10/77 (12%)
Query: 42  LGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93
           LGF++ GG        +  +  I+++R+ P G A +   L+ GD+++  NG S    +HG
Sbjct: 4   LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINIEHG 61
Query: 94  KAVELLKQAQRSVKLVV 110
           +AV LLK  Q +V+L++
Sbjct: 62  QAVSLLKTFQNTVELII 78

>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY Factor Length = 91

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  L K   G GF++ G K +    YI  + PG  A++  GL  GD+L+ VNG +VE 
Sbjct: 4   PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           E H + V  ++ A  +V+L+V
Sbjct: 62  ETHQQVVSRIRAALNAVRLLV 82

>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy- Terminal Tail Of The Erbb2 Receptor Length = 95

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 39  DEGLGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           D  LGF++ GG        +  +  I+++R+ P G A +   L+ GD+++  NG S    
Sbjct: 12  DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINI 69
Query: 91  DHGKAVELLKQAQRSVKLVV 110
           +HG+AV LLK  Q +V+L++
Sbjct: 70  EHGQAVSLLKTFQNTVELII 89

>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain Length = 85

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 42  LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
            GF + GGK+ N P+ ISRI PG  A     L +GD +++++GV+ +   H +A   +K 
Sbjct: 13  WGFRLQGGKDFNMPLTISRITPGSKA-AQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 71
Query: 102 AQRSVKLVVR 111
           A  ++ L ++
Sbjct: 72  ASYNLSLTLQ 81

>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz Length = 103

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 39  DEGLGFNVMGG--------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           D  LGF++ GG        +  +  I+++R+ P G A +   L+ GD+++  NG S    
Sbjct: 20  DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQPGDKIIQANGYSFINI 77
Query: 91  DHGKAVELLKQAQRSVKLVV 110
           +HG+AV LLK  Q +V+L++
Sbjct: 78  EHGQAVSLLKTFQNTVELII 97

>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction Length = 91

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  L K   G GF++ G K +    YI  + PG  A++  GL  GD+L+ VNG +VE 
Sbjct: 4   PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           E H + V  ++ A  +V+L+V
Sbjct: 62  ETHQQVVSRIRAALNAVRLLV 82

>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With Beta2ar And Pdgfr Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  L K   G GF++ G K +    YI  + PG  A++  GL  GD+L+ VNG +VE 
Sbjct: 3   PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 60
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           E H + V  ++ A  +V+L+V
Sbjct: 61  ETHQQVVSRIRAALNAVRLLV 81

>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With Beta2- Ar And Pdgfr Length = 91

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  L K   G GF++ G K +    YI  + PG  A++  GL  GD+L+ VNG +VE 
Sbjct: 4   PRLCCLEKGPNGYGFHLHGEKGKLGQ-YIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           E H + V  ++ A  +V+L+V
Sbjct: 62  ETHQQVVSRIRAALNAVRLLV 82

>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 42  LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
            GF + GGK+ N P+ ISRI PG  A     L +GD +++++GV+ +   H +A   +K 
Sbjct: 20  WGFRLQGGKDFNMPLTISRITPGSKA-AQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS 78
Query: 102 AQRSVKLVVR 111
           A  ++ L ++
Sbjct: 79  ASYNLSLTLQ 88

>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine Phosphatase, Non-Receptor Type 4, Pdz Domain Length = 100

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 37  KTDEG--LGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHG 93
           K DE    GFNV GG +Q  P+ +SR+ PG  AD     L  GDQ++ +NG  +    H 
Sbjct: 11  KPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD 70
Query: 94  KAVELLKQA--QRSVKLVVRYTPKVLE 118
           + V  +K +  + S +L++   P  +E
Sbjct: 71  QVVLFIKASCERHSGELMLLVRPNAVE 97

>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human Cdna, Kiaa1095 Length = 107

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 42  LGFNVMGGK--------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93
           LGFN++GG+          +  I++S+I+  G A + GGL+  D+++ VNG  +    H 
Sbjct: 21  LGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHD 80
Query: 94  KAVELLKQAQRSVKL-VVRYT 113
           +AVE  K A+  + + V+R T
Sbjct: 81  QAVEAFKTAKEPIVVQVLRRT 101

>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed Protein Product Length = 104

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 33  VELPKTDEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           VEL +   G G  + GG++   ++P+ +  ++  G A R G L+ GD +L +NG S +G 
Sbjct: 15  VELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGL 74
Query: 91  DHGKAVELLKQAQRSVKLVVR 111
            H +AVE ++     + LV+R
Sbjct: 75  THAQAVERIRAGGPQLHLVIR 95

>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor Sr-Bi With The Adaptor Protein Pdzk1 Length = 106

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR  +L K  EG  +      E+++  ++ R+I  G      GL  GD++L +NGV V+ 
Sbjct: 2   PRESKLSKQ-EGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 60
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           E+H + VEL++++  SV L+V
Sbjct: 61  EEHAQVVELVRKSGNSVTLLV 81

>pdb|2D90|A Chain A, Solution Structure Of The Third Pdz Domain Of Pdz Domain Containing Protein 1 Length = 102

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           RVV + K   G GF +  G EQ   I I  I PG  A+  G LK  D +++VNG SVE  
Sbjct: 8   RVVVIKKGSNGYGFYLRAGPEQKGQI-IKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEAL 65
Query: 91  DHGKAVELLKQAQRSVKLVV 110
           DH   VE++++      L+V
Sbjct: 66  DHDGVVEMIRKGGDQTTLLV 85

>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The Prostacyclin Receptor And The First Pdz Domain Of Pdzk1 Length = 109

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR  +L K  EG  +      E+++  ++ R+I  G      GL  GD++L +NGV V+ 
Sbjct: 3   PRESKLSKQ-EGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 61
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           E+H + VEL++++  SV L+V
Sbjct: 62  EEHAQVVELVRKSGNSVTLLV 82

>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594) Length = 94

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 26  GHAHPRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQL 79
           GH     VEL K ++GLG +++G   G +   +   I++  +  GG A R G ++  DQ+
Sbjct: 1   GHMELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQI 60
Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
           + V+G+S+ G     A  +L+  + +V+ V+
Sbjct: 61  VEVDGISLVGVTQNFAATVLRNTKGNVRFVI 91

>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine Phosphatase, Non-Receptor Type 4 Length = 119

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 37  KTDEG--LGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHG 93
           K DE    GFNV GG +Q  P+ +SR+ PG  AD     L  GDQ++ +NG  +    H 
Sbjct: 22  KPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD 81
Query: 94  KAVELLKQA 102
           + V  +K +
Sbjct: 82  QVVLFIKAS 90

>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With The C- Terminus Of A Rabies Virus G Protein Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 37  KTDEG--LGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHG 93
           K DE    GFNV GG +Q  P+ +SR+ PG  AD     L  GDQ++ +NG  +    H 
Sbjct: 24  KPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD 83
Query: 94  KAVELLKQA 102
           + V  +K +
Sbjct: 84  QVVLFIKAS 92

>pdb|2EDP|A Chain A, Solution Structure Of The Pdz Domain From Human Shroom Family Member 4 Length = 100

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 42  LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
            GF + GG E   P+ +S+I  GG A     ++ GD+L+++NG  + G    +A+ L+K 
Sbjct: 23  WGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQ-EALILIKG 81
Query: 102 AQRSVKLVVR 111
           + R +KL+VR
Sbjct: 82  SFRILKLIVR 91

>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of Neurabin Length = 170

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 33  VELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
           VEL K ++GLG +++G   G +   +   I++  +  GG A R G ++  DQ++ V+G+S
Sbjct: 84  VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 143
Query: 87  VEGEDHGKAVELLKQAQRSVKLVV 110
           + G     A  +L+  + +V+ V+
Sbjct: 144 LVGVTQNFAATVLRNTKGNVRFVI 167

>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin Protein Length = 114

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 41  GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
           GLG ++  G  Q   I+IS + PG ++   G L+ GDQ++ VNGV     DH +AV +LK
Sbjct: 28  GLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
Query: 101 QAQRSVKLVV 110
            + RS+ + +
Sbjct: 87  -SSRSLTISI 95

>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Kiaa1526 Protein Length = 128

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 42  LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
           LG  + GG E    IYI+ + PG  A+  G LK GDQ+L VNG S     H +AV LLK 
Sbjct: 34  LGLTIRGGAEYGLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLKS 92
Query: 102 AQRSVKLV 109
           ++  +  V
Sbjct: 93  SRHLILTV 100

>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The Carboxyl Tail Peptide Of Cadherin23 Length = 92

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 41  GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
           GLG ++  G  Q   I+IS + PG ++   G L+ GDQ++ VNGV     DH +AV +LK
Sbjct: 14  GLGCSISSGPIQKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLK 72
Query: 101 QAQ 103
            ++
Sbjct: 73  SSR 75

>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C Length = 128

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 38  TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           +D+ LGF +           G E+   I+ISR++PGG+A+  G L   D+++ VNG+ V 
Sbjct: 41  SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 100
Query: 89  GEDHGKAVELLKQAQRSVKLVVRYTP 114
           G+   +  +++     S  L++   P
Sbjct: 101 GKTLDQVTDMM--VANSSNLIITVKP 124

>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6 Length = 128

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 38  TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           +D+ LGF +           G E+   I+ISR++PGG+A+  G L   D+++ VNG+ V 
Sbjct: 41  SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 100
Query: 89  GEDHGKAVELLKQAQRSVKLVVRYTP 114
           G+   +  +++     S  L++   P
Sbjct: 101 GKTLDQVTDMM--VANSSNLIITVKP 124

>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With Ve-Cadherin C-Terminus Length = 111

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 32  VVELPKTDEG---LGFNVMGGKEQNS----PIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
             E+P  D G   LG +V G + + +     I++  II GG A + G L+  DQL++VNG
Sbjct: 10  TFEVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNG 69
Query: 85  VSVEGEDHGKAVELLKQA 102
            S+ G+ + +A+E L+++
Sbjct: 70  ESLLGKANQEAMETLRRS 87

>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein Length = 113

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 50  KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109
           + +   + ISRI+ GG A++ G L  GD++L +NG+ + G+D  +  +LL     ++  V
Sbjct: 44  RNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV 103
Query: 110 V 110
           +
Sbjct: 104 L 104

>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3 Length = 104

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 32  VVELPKTDEG---LGFNVMGGKEQNS----PIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
             E+P  D G   LG +V G + + +     I++  II GG A + G L+  DQL++VNG
Sbjct: 7   TFEVPLNDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNG 66
Query: 85  VSVEGEDHGKAVELLKQAQRS 105
            S+ G+ + +A+E L+++  +
Sbjct: 67  ESLLGKANQEAMETLRRSMST 87

>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 97

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 33  VELPKTDEGLGFNVMG----GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           VEL K  +GLG  + G     K + S I++  I      +  G ++ GDQ+++V+G +++
Sbjct: 8   VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
Query: 89  GEDHGKAVELLKQAQRSVKLVV 110
           G  + +AVE+L+   ++V L +
Sbjct: 68  GFTNQQAVEVLRHTGQTVLLTL 89

>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex Length = 98

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 38  TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           +D+ LGF +           G E+   I+ISR++PGG+A+  G L   D+++ VNG+ V 
Sbjct: 13  SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 72
Query: 89  GEDHGKAVELLKQAQRSVKLVVRYTP 114
           G+   +  +++     S  L++   P
Sbjct: 73  GKTLDQVTDMM--VANSSNLIITVKP 96

>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852 Length = 127

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 32  VVELPKTDEG---LGFNVMGGKEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNG 84
            +E+P  D G   LG ++ G K + +     I+I  II GG A + G L+  DQL++VNG
Sbjct: 26  TLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNG 85
Query: 85  VSVEGEDHGKAVELLKQA 102
            ++ G+ + +A+E L+++
Sbjct: 86  ETLLGKSNHEAMETLRRS 103

>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE Regulatory Factor 1(150-358) Length = 216

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  + K   G GFN+   K +    +I  + P   A+   GL+  D+++ VNGV +EG
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKPGQ-FIRSVDPDSPAE-ASGLRAQDRIVEVNGVCMEG 67
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           + HG  V  ++      KL+V
Sbjct: 68  KQHGDVVSAIRAGGDETKLLV 88

>pdb|2KPK|A Chain A, Magi-1 Pdz1 Length = 129

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 33  VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
            +L K+  G GF V+GG E +  + I  ++  G A   G ++ GD ++SVN   V G  H
Sbjct: 22  TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 81
Query: 93  GKAVELLKQ 101
            + V++ + 
Sbjct: 82  AQVVKIFQS 90

>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C- Terminal Peptide Of Hpv18 E6 Length = 85

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 34  ELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93
           +L K+  G GF V+GG E +  + I  ++  G A   G ++ GD ++SVN   V G  H 
Sbjct: 5   KLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHA 64
Query: 94  KAVELLKQ 101
           + V++ + 
Sbjct: 65  QVVKIFQS 72

>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal Ligand Length = 102

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 38  TDEGLGFNV---------MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           +D+ LGF +           G E+   I+ISR++PGG+A+  G L   D+++ VNG+ V 
Sbjct: 15  SDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVA 74
Query: 89  GEDHGKAVELLKQAQRSVKLVVRYTP 114
           G+   +  +++     S  L++   P
Sbjct: 75  GKTLDQVTDMM--VANSSNLIITVKP 98

>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human Cdna Length = 110

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 32  VVELPKTDEGLGFNVMGGKEQN--SP-IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
            VEL +   GLG  ++ G   +  +P +YI  ++PG  A   G L  GD++L VNG S+ 
Sbjct: 11  TVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLL 70
Query: 89  GEDHGKAVELLKQAQRSVKLVV 110
           G  + +AV+L++   + ++ +V
Sbjct: 71  GLGYLRAVDLIRHGGKKMRFLV 92

>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1 (150- 270) Length = 128

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  + K   G GFN+   K +    +I  + P   A+   GL+  D+++ VNGV +EG
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKPGQ-FIRSVDPDSPAE-ASGLRAQDRIVEVNGVCMEG 67
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           + HG  V  ++      KL+V
Sbjct: 68  KQHGDVVSAIRAGGDETKLLV 88

>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human Nherf-1 (Slc9a3r1) Length = 92

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  + K   G GFN+   K +    +I  + P   A+   GL+  D+++ VNGV +EG
Sbjct: 5   PRLCTMKKGPSGYGFNLHSDKSKPGQ-FIRSVDPDSPAE-ASGLRAQDRIVEVNGVCMEG 62
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           + HG  V  ++      KL+V
Sbjct: 63  KQHGDVVSAIRAGGDETKLLV 83

>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human Scribble (Kiaa0147 Protein) Length = 111

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 56  IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
           I+IS++ P G A R G L+ G +LL VN  S+ G  HG+AV+LL+    ++ ++V
Sbjct: 46  IFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLV 100

>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1 Length = 98

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  + K   G GFN+   K +    +I  + P   A+  G L+  D+++ VNGV +EG
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKPGQ-FIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEG 67
Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           + HG  V  ++      KL+V
Sbjct: 68  KQHGDVVSAIRAGGDETKLLV 88

>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of SpinophilinNEURABINII PROTEIN Length = 107

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 33  VELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
           VEL K ++GLG +++G   G +   +   I++  +  GG A R G ++  DQ++ V+G+S
Sbjct: 13  VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 72
Query: 87  VEGEDHGKAVELLKQAQRSVKLVV 110
           + G     A  +L+  + +V+ V+
Sbjct: 73  LVGVTQNFAATVLRNTKGNVRFVI 96

>pdb|1UJD|A Chain A, Solution Structure Of Rsgi Ruh-003, A Pdz Domain Of Hypothetical Kiaa0559 Protein From Human Cdna Length = 117

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 38  TDEGLGFNVMGGKE---QNSPI--YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
           +  GLG  ++GGKE    +  I  YI++I+PGG A++ G L  G Q+L  NG+ +  + +
Sbjct: 28  SGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTY 87
Query: 93  GKAVELLKQAQRSVKLVVR 111
            +   ++ Q     ++ VR
Sbjct: 88  EEVQSIISQQSGEAEICVR 106

>pdb|2DMZ|A Chain A, Solution Structure Of The Third Pdz Domain Of Human Inad- Like Protein Length = 129

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 33  VELPKTD-EGLGFNVMG--GKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
           VEL + D + LG  ++G  G       S IY+  +IPG  A  +G ++  D++++V+GV+
Sbjct: 19  VELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVN 78
Query: 87  VEGEDHGKAVELLKQAQRSVKLVV 110
           ++G  +   VE+L+ A + V L +
Sbjct: 79  IQGFANHDVVEVLRNAGQVVHLTL 102

>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue Protein Length = 103

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 42  LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
            GF + GGK+ N P+ IS +  GG A +   ++ GD +LS++G+S +G  H +A   +K 
Sbjct: 17  WGFRLQGGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNKIKA 75
Query: 102 AQRSVKLVVR 111
              S+ + ++
Sbjct: 76  CTGSLNMTLQ 85

>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In Complex With A Norpa C-Terminal Peptide Length = 98

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 32  VVELPKT-DEGLGFNVMGGKEQNSP------IYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           +V L KT  +  G  ++ G+ ++SP      I+I  I+P   A   G LK GD++LS+NG
Sbjct: 8   MVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNG 67
Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
             V        ++L+K+A   ++L ++   K
Sbjct: 68  KDVRNSTEQAVIDLIKEADFKIELEIQTFDK 98

>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The C-Terminal 6- Peptide Extension Of Ns1 Length = 89

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 42  LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
            GF + GG++ ++PI ++++   G A +   L+ GD ++++NG S EG  H +A   ++Q
Sbjct: 13  WGFRITGGRDFHTPIMVTKVAERGKA-KDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 71
Query: 102 AQRSVKL 108
           +   ++L
Sbjct: 72  SPSPLRL 78

>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2 Associated Lim Protein Length = 103

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 42  LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
            GF + GG + N P+ I+RI PG  A     L  GD +L+++G   E   H  A + +K 
Sbjct: 17  WGFRLSGGIDFNQPLVITRITPGSKA-AAANLCPGDVILAIDGFGTESMTHADAQDRIKA 75
Query: 102 AQRSVKLVVR------YTPKV 116
           A   + L +       ++P+V
Sbjct: 76  ASYQLCLKIDRAETRLWSPQV 96

>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A C-Terminal Extension From Human Beta-Tropomyosin Length = 87

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 42  LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
            GF + GG++ ++PI ++++   G A +   L+ GD ++++NG S EG  H +A   ++Q
Sbjct: 14  WGFRITGGRDFHTPIMVTKVAERGKA-KDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 72
Query: 102 AQRSVKL 108
           +   ++L
Sbjct: 73  SPSPLRL 79

>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4 Precursor Protein-Binding Family A Member 3 (Neuron- Specific X11l2 Protein) (Neuronal Munc18-1-Interacting Protein 3) (Mint-3) (Adapter Protein X11gamma) Length = 94

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 32  VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
           ++  P   E LGF V  G        I  ++ GG+A+R GG++ G +++ +NG SV    
Sbjct: 12  IIHRPHAREQLGFCVEDG-------IICSLLRGGIAER-GGIRVGHRIIEINGQSVVATP 63
Query: 92  HGKAVELLKQAQRSVKL 108
           H + +ELL +A   V +
Sbjct: 64  HARIIELLTEAYGEVHI 80

>pdb|2G5M|B Chain B, Spinophilin Pdz Domain Length = 113

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 26  GHAHPRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQL 79
           GH     VEL K  EGLG +++G   G +   +   I++  +  GG A R G ++  D L
Sbjct: 1   GHMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
           + V+G S+ G     A  +L+  +  V+ ++
Sbjct: 61  VEVDGTSLVGVTQSFAASVLRNTKGRVRFMI 91

>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function, Nmr, 20 Structures Length = 130

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 27  HAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
            A    V L K   GLGF++ GGK     + P+ I+RI  G  +++   ++ GD++L + 
Sbjct: 27  EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLG 86
Query: 84  GVSVEGEDHGKAVELLK 100
           G +++G    +A  ++K
Sbjct: 87  GTAMQGLTRFEAWNIIK 103

>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C- Terminal Extension From Human Beta-Tropomyosin Length = 89

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 42 LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           GF + GGK+ N P+ ISR+ PGG A    G+  GD +LS++G
Sbjct: 15 WGFRLQGGKDFNVPLSISRLTPGGKA-AQAGVAVGDWVLSIDG 56

>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain Length = 89

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           R V + K D G G  V G    ++P+++  +   G A R  G++ GD+++ VNG  V   
Sbjct: 9   RCVIIQKDDNGFGLTVSG----DNPVFVQSVKEDGAAMR-AGVQTGDRIIKVNGTLVTHS 63
Query: 91  DHGKAVELLKQAQRSVKLVVRYTP 114
           +H + V+L+K     V L V+  P
Sbjct: 64  NHLEVVKLIKSGSY-VALTVQGRP 86

>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate Receptor Interacting Protein 2 Length = 112

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 41  GLGFNVMGG----KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAV 96
           G G  + GG    +  +SP  +  I P   A+R G L+ GD++LS+NG++ E     +A 
Sbjct: 28  GFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEAN 87
Query: 97  ELLKQAQRSVKLVVRYTPKVLEEMEMRFDK 126
           +LL+ A  + K+V          +E+ FD 
Sbjct: 88  QLLRDAALAHKVV----------LEVEFDS 107

>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal Peptide Of Human Alpha-Actinin-1 Length = 88

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 42  LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ 101
            GF + GGK+ N P+ IS +  GG A     ++ GD +LS++G++ +G  H +A   +K 
Sbjct: 15  WGFRLQGGKDFNMPLTISSLKDGGKA-AQANVRIGDVVLSIDGINAQGMTHLEAQNKIKG 73
Query: 102 AQRSVKLVVR 111
              S+ + ++
Sbjct: 74  CTGSLNMTLQ 83

>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1) Length = 103

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 29  HPRVVELPKT-DEGLGFNVMGGKEQNS---------PIYISRIIPGGVADRHGGLKRGDQ 78
            PR VEL +   + LG +++GG+   S          I+I  ++    A ++G LK GD+
Sbjct: 4   QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 63
Query: 79  LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           ++ V+G+ +    H +AVE +++A   V  +V+
Sbjct: 64  IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 96

>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of Spinophilin Length = 170

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 33  VELPKTDEGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
           VEL K  EGLG +++G       G E+   I++  +  GG A R G ++  D L+ V+G 
Sbjct: 84  VELEKDSEGLGISIIGMGAGADMGLEKLG-IFVKTVTEGGAAHRDGRIQVNDLLVEVDGT 142
Query: 86  SVEGEDHGKAVELLKQAQRSVKLVV 110
           S+ G     A  +L+  +  V+ ++
Sbjct: 143 SLVGVTQSFAASVLRNTKGRVRFMI 167

>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of Spinophilin And The Small Natural Molecular Toxin Nodularin-R Length = 170

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 33  VELPKTDEGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
           VEL K  EGLG +++G       G E+   I++  +  GG A R G ++  D L+ V+G 
Sbjct: 84  VELEKDSEGLGISIIGMGAGADMGLEKLG-IFVKTVTEGGAAHRDGRIQVNDLLVEVDGT 142
Query: 86  SVEGEDHGKAVELLKQAQRSVKLVV 110
           S+ G     A  +L+  +  V+ ++
Sbjct: 143 SLVGVTQSFAASVLRNTKGRVRFMI 167

>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating Protein 21 Length = 126

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 29/109 (26%)
Query: 30  PRVVELPKTDEGLGFNVM-----------------------GGKEQN-----SPIYISRI 61
           P+ V L +T +G GF +                        GGK++N       I++ ++
Sbjct: 9   PKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQV 68
Query: 62  IPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
             GG A    GL  GD+++ VNG SV G+ + + + L++ +  +++L V
Sbjct: 69  KEGGPA-FEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116

>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain Length = 83

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 30  PRV--VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           PRV  VE+ +   G GF + G     +P  +S ++ G  AD   GL+ GDQ+L+VN ++V
Sbjct: 1   PRVRSVEVARGRAGYGFTLSG----QAPCVLSCVMRGSPAD-FVGLRAGDQILAVNEINV 55
Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           +   H   V+L+ +    + +V+
Sbjct: 56  KKASHEDVVKLIGKCSGVLHMVI 78

>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz Length = 123

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 29  HPRVVELPKT-DEGLGFNVMGGKEQNS---------PIYISRIIPGGVADRHGGLKRGDQ 78
            PR VEL +   + LG +++GG+   S          I+I  ++    A ++G LK GD+
Sbjct: 24  QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 83
Query: 79  LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           ++ V+G+ +    H +AVE +++A   V  +V+
Sbjct: 84  IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 116

>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse Harmonin Length = 118

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 56  IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS----VKLVVR 111
           + +S +  GG A+RHGG+ +GD+++++NG  V      +A   L++A       + LVV 
Sbjct: 45  VVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVA 104
Query: 112 YTPKVLEEMEMRF 124
             P    + E+ F
Sbjct: 105 VCPPKEYDDELTF 117

>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine Nucleotide Exchange Factor 11 Length = 93

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           R V + K   G GF V G    +  + +  + PGG A +  G+K GD+++ VNG  V   
Sbjct: 10  RCVIIQKDQHGFGFTVSG----DRIVLVQSVRPGGAAMK-AGVKEGDRIIKVNGTMVTNS 64
Query: 91  DHGKAVELLKQ 101
            H + V+L+K 
Sbjct: 65  SHLEVVKLIKS 75

>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide Synthase Pdz Domain Complexed With An Associated Peptide Length = 127

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 41  GLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
           GLGF V   KE+ S  P+ IS +I GG A++ G ++ GD +L+VN   +    +  A+E+
Sbjct: 21  GLGFLV---KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 77
Query: 99  LK--QAQRSVKLVVRYTPKVLEEMEMRFD---KQRTARRRQP 135
           L+   ++  V L++R        +E  F      +T R  QP
Sbjct: 78  LRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 119

>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By Structure Of Nnos-Syntrophin Complex Length = 115

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 41  GLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
           GLGF V   KE+ S  P+ IS +I GG A++ G ++ GD +L+VN   +    +  A+E+
Sbjct: 16  GLGFLV---KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 72
Query: 99  LK--QAQRSVKLVVRYTPKVLEEMEMRFD---KQRTARRRQP 135
           L+   ++  V L++R        +E  F      +T R  QP
Sbjct: 73  LRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 114

>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By Structure Of Nnos-Syntrophin Complex Length = 112

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 41  GLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
           GLGF V   KE+ S  P+ IS +I GG A++ G ++ GD +L+VN   +    +  A+E+
Sbjct: 14  GLGFLV---KERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEV 70
Query: 99  LK--QAQRSVKLVVRYTPKVLEEMEMRFD---KQRTARRRQP 135
           L+   ++  V L++R        +E  F      +T R  QP
Sbjct: 71  LRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	138
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	6e-39
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	1e-37
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	2e-36
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	5e-36
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	6e-36
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	7e-36
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	9e-36
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	1e-35
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	4e-35
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	7e-35
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	3e-34
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-34
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	1e-32
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	6e-34
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	8e-34
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	1e-33
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	1e-33
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-33
2opg_A	98	Multiple PDZ domain protein; structural protein, s	3e-33
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	3e-33
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	4e-33
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	4e-33
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	6e-33
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	9e-33
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	9e-33
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	1e-32
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	1e-32
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	1e-32
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	2e-32
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-32
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-32
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-32
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	2e-32
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	3e-32
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	3e-32
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	3e-32
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	3e-32
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	4e-32
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	4e-32
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	5e-32
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	6e-32
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	7e-32
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	9e-32
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	1e-31
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	1e-31
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	1e-31
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	2e-31
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	3e-31
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	3e-31
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	9e-27
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	3e-31
2awx_A	105	Synapse associated protein 97; membrane protein, s	4e-31
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	5e-31
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	5e-31
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	6e-31
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	8e-31
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	8e-31
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-27
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	9e-31
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	9e-31
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	1e-30
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	1e-30
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	1e-30
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	1e-30
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	1e-30
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	1e-30
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	2e-30
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	2e-30
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	4e-30
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	6e-30
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	6e-30
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	6e-30
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	1e-29
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	1e-29
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	1e-29
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	2e-29
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-29
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	2e-29
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	3e-29
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	3e-29
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	4e-29
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	4e-29
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	5e-29
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	6e-29
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	6e-29
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	6e-29
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	9e-29
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	1e-28
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	2e-28
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	2e-28
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	3e-28
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	3e-28
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	3e-28
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	4e-28
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	5e-28
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	5e-28
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	6e-28
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	8e-28
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	9e-28
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	9e-28
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	1e-27
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	1e-27
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	2e-27
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	2e-27
2d90_A	102	PDZ domain containing protein 1; structural genomi	2e-27
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	2e-27
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	3e-27
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	3e-27
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	3e-27
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	4e-27
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	5e-27
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	7e-27
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	1e-26
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	2e-26
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	2e-26
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	3e-26
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	4e-26
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	5e-26
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	6e-26
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	7e-26
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	3e-24
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-12
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	1e-25
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	2e-25
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	2e-25
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	3e-25
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	3e-25
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	3e-25
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	4e-25
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	4e-25
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	4e-25
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	1e-24
2ego_A	96	General receptor for phosphoinositides 1- associat	2e-24
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	2e-24
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	3e-24
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-24
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	8e-21
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	3e-24
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	4e-24
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	4e-24
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	4e-24
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	4e-24
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	4e-24
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	6e-24
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	3e-23
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	4e-23
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	5e-23
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	2e-22
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	6e-11
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	4e-22
3khf_A	99	Microtubule-associated serine/threonine-protein ki	5e-22
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	7e-22
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	7e-22
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	1e-21
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	1e-21
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	2e-21
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	4e-20
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	5e-19
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-18
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	6e-18
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	2e-17
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	2e-17
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	3e-16
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	3e-17
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	1e-15
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	4e-15
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	8e-10
3k50_A	403	Putative S41 protease; structural genomics, joint	1e-05
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	1e-04

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score =  125 bits (317), Expect = 6e-39
 Identities = 75/85 (88%), Positives = 77/85 (90%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
             VVELPKTDEGLGFN+MGGKEQNSPIYISR+IPGGVADRHGGLKRGDQLLSVNGVSVEG
Sbjct: 6   SGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEG 65

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTP 114
           E H KAVELLK AQ SVKLVVR  P
Sbjct: 66  EQHEKAVELLKAAQGSVKLVVRSGP 90

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score =  122 bits (309), Expect = 1e-37
 Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 1/94 (1%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR + + +   GLGFN++GG E    I+IS I+ GG AD  G L++GDQ+LSVNGV +  
Sbjct: 12  PRRIVIHRGSTGLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 70

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
             H +A   LK A ++V ++ +Y P+     E +
Sbjct: 71  ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score =  119 bits (300), Expect = 2e-36
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 26  GHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           G    R V + K D  GLG ++ GG+E   PI IS+I  G  AD+   L  GD +LSVNG
Sbjct: 1   GSLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60

Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVVRY 112
             +    H +AV+ LK+  + V L V+Y
Sbjct: 61  EDLSSATHDEAVQALKKTGKEVVLEVKY 88

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score =  118 bits (298), Expect = 5e-36
 Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 24  SEGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
           S+G    R V L K D EGLG ++ GGKE   PI IS I PG  ADR GGL  GD +L+V
Sbjct: 4   SQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAV 63

Query: 83  NGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
           NGV++    H +AV +L Q +  ++  V Y  
Sbjct: 64  NGVNLRDTKHKEAVTILSQQRGEIEFEVVYVA 95

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score =  118 bits (298), Expect = 6e-36
 Identities = 29/83 (34%), Positives = 51/83 (61%)

Query: 29  HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
               VEL +  +G GF++ GG+E N  +Y+ R+   G A+R G ++ GD++L +NG + +
Sbjct: 24  DFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTK 83

Query: 89  GEDHGKAVELLKQAQRSVKLVVR 111
              H +A+EL+K   R V+L ++
Sbjct: 84  NMKHSRAIELIKNGGRRVRLFLK 106

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score =  118 bits (298), Expect = 7e-36
 Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR + + +   GLGFN++GG++    I+IS I+ GG AD  G L++GDQ+LSVNGV +  
Sbjct: 15  PRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 73

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
             H +A   LK A ++V ++ +Y P+     E
Sbjct: 74  ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 105

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score =  117 bits (296), Expect = 9e-36
 Identities = 28/89 (31%), Positives = 48/89 (53%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
             VEL +    LG  + G +E   PI IS +  GG+A+R G +  GD++L++N  S++G+
Sbjct: 7   YTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGK 66

Query: 91  DHGKAVELLKQAQRSVKLVVRYTPKVLEE 119
              +A+ LL+ A  +V L ++        
Sbjct: 67  PLSEAIHLLQMAGETVTLKIKKQTDAQPA 95

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score =  118 bits (297), Expect = 1e-35
 Identities = 40/92 (43%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR + L K   GLGFN++GG++    I++S I+ GG AD  G L+RGD++LSVNGV++  
Sbjct: 16  PRKIILHKGSTGLGFNIVGGED-GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRN 74

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
             H +A   LK+A +SV +V +Y P+     E
Sbjct: 75  ATHEQAAAALKRAGQSVTIVAQYRPEEYSRFE 106

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  116 bits (292), Expect = 4e-35
 Identities = 29/97 (29%), Positives = 53/97 (54%)

Query: 19  AAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQ 78
            +  +S        V++ K  +G GF++ GG+E    +Y+ R+   G A R+G ++ GDQ
Sbjct: 1   GSSGSSGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQ 60

Query: 79  LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
           ++ +NG S     H +A+EL+K   R V+L+++    
Sbjct: 61  IIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTG 97

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score =  115 bits (291), Expect = 7e-35
 Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 23  ASEGHAHPRVVELPKTDEGLGFNVMGGK------EQNSPIYISRIIPGGVADRHGGLKRG 76
            S G +   V  L +++ GLGF++ GGK        ++ I++SRI  GG A R G L+ G
Sbjct: 1   GSSGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVG 60

Query: 77  DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
           D++LS+NGV V    H  AV LL  A  ++ L++     
Sbjct: 61  DRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score =  113 bits (286), Expect = 3e-34
 Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           + + L + + G GF ++GG E   PIYI  I+P G AD  G L+ GD+L+SV+G  V G+
Sbjct: 4   QDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGK 63

Query: 91  DHGKAVELLKQA--QRSVKLVVRYTP 114
            H   V+L++QA  Q  V L VR T 
Sbjct: 64  SHQLVVQLMQQAAKQGHVNLTVRQTR 89

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score =  116 bits (293), Expect = 5e-34
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 23  ASEGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
                    VVEL K +   LG  V GG +++    +S +  GG+A R   L  GD + +
Sbjct: 1   GPGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKA 60

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQ 127
           VNG+++    H + + LLK     V L V Y    +         +
Sbjct: 61  VNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFR 106

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score =  112 bits (283), Expect = 1e-32
 Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 27  HAHPRVVELPKTDEGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
                 V L K     GF + GG      ++ P+ I+ + PGG ADR G +K GD+LLSV
Sbjct: 104 MFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSV 163

Query: 83  NGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
           +G+ + G  H +A+ +LKQ  +   L++ Y   V++
Sbjct: 164 DGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMD 199

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score =  113 bits (285), Expect = 6e-34
 Identities = 37/82 (45%), Positives = 51/82 (62%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           +V+ L +  EGLG ++ GGKE   PI IS I PG  ADR GGL  GD +L+VNGV++   
Sbjct: 30  KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDT 89

Query: 91  DHGKAVELLKQAQRSVKLVVRY 112
            H +AV +L Q +  ++  V Y
Sbjct: 90  KHKEAVTILSQQRGEIEFEVVY 111

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score =  112 bits (283), Expect = 8e-34
 Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 32  VVELPKTDEGLGFNVMGG----KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
            V L K     GF + GG    + ++ P+ I+ + PGG ADR G +K GD+LLSV+G+ +
Sbjct: 6   EVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRL 65

Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTP 114
            G  H +A+ +LKQ  +   L++ Y  
Sbjct: 66  LGTTHAEAMSILKQCGQEAALLIEYDV 92

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score =  113 bits (284), Expect = 1e-33
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)

Query: 28  AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
            H   VEL     GLGF ++GGK   S + +  I+PGG+ADR G L+ GD +L + G +V
Sbjct: 14  GHVEEVELINDGSGLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNV 71

Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTPK 115
           +G    +  ++L+    SV+++V   P 
Sbjct: 72  QGMTSEQVAQVLRNCGNSVRMLVARDPA 99

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score =  112 bits (283), Expect = 1e-33
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 19  AAFAASEGHAHPRVVELPKTDEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRG 76
            +  +S   +    VEL +   G G  + GG++   ++P+ +  ++  G A R G L+ G
Sbjct: 1   GSSGSSGQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVG 60

Query: 77  DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
           D +L +NG S +G  H +AVE ++     + LV+R    
Sbjct: 61  DLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLS 99

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score =  112 bits (281), Expect = 2e-33
 Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 5/95 (5%)

Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L + + GLGF++ GG +      +  I+I++IIPGG A   G L   D +L VN V V
Sbjct: 8   IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67

Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEM 122
               H +AVE LK+A   V+LVVR      EE  +
Sbjct: 68  SEVVHSRAVEALKEAGPVVRLVVRRRQPPPEETSV 102

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score =  111 bits (280), Expect = 3e-33
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)

Query: 29  HPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
               +E+ K   GLG +++GG +     I I  +   G A + G L  GDQ+L VNG+ +
Sbjct: 4   CETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63

Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEM 122
               H +A+ +L+Q  + V+L +       +   +
Sbjct: 64  RKATHDEAINVLRQTPQRVRLTLYRDEAPYKSTRL 98

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score =  111 bits (279), Expect = 3e-33
 Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 31  RVVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
             VEL K D  LG +V GG     ++  IY+  +IP G A+  G + +GD++L+VNGVS+
Sbjct: 7   FEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSL 66

Query: 88  EGEDHGKAVELLKQAQRSVKLVVR 111
           EG  H +AVE L+   + V L++ 
Sbjct: 67  EGATHKQAVETLRNTGQVVHLLLE 90

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score =  111 bits (279), Expect = 4e-33
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 5/91 (5%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
              + L +   GLGFN++GG +Q     +S IY+SRI   G A   G L+ GD++LSVNG
Sbjct: 8   EEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG 67

Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
             ++   H  AV+L + A  +V L V++  +
Sbjct: 68  QDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE 98

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  111 bits (279), Expect = 4e-33
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
             V L + + G GF ++GG E   PI I  +I  G ADR G L  GD+L+ V+G+ V G+
Sbjct: 11  LDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGK 70

Query: 91  DHGKAVELLKQAQRS--VKLVVR 111
            H   ++L+  A R+  V L VR
Sbjct: 71  THRYVIDLMHHAARNGQVNLTVR 93

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score =  111 bits (279), Expect = 6e-33
 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 30  PRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           P  V L K     +G ++ GG +    +YI ++     A   G +  GD++  VNG S++
Sbjct: 20  PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIK 79

Query: 89  GEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDK 126
           G+   +  +++++ +  V +         +++E+ F+ 
Sbjct: 80  GKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNG 117

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score =  110 bits (278), Expect = 9e-33
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNS-PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
            ++EL K   GLG ++ G K+++   I++  I P G A   G ++ GD+LL +N   + G
Sbjct: 27  HIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYG 86

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
             H  A  ++K A   VKLV       + +M 
Sbjct: 87  RSHQNASAIIKTAPSKVKLVFIRNEDAVNQMA 118

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  110 bits (277), Expect = 9e-33
 Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR V++ K  E LG +++ G++    IY+S++  G +A +  GL+ GDQLL  NG+++  
Sbjct: 20  PRHVKVQKGSEPLGISIVSGEK--GGIYVSKVTVGSIAHQ-AGLEYGDQLLEFNGINLRS 76

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEM 122
               +A  ++ Q   ++ ++ +Y P V +    
Sbjct: 77  ATEQQARLIIGQQCDTITILAQYNPHVHQLSSH 109

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score =  110 bits (277), Expect = 1e-32
 Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 28  AHPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
               ++E+ K   GLG +++GGK+   + I I  +   G A R G L  GDQ+L VNGV 
Sbjct: 16  GQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD 75

Query: 87  VEGEDHGKAVELLKQAQRSVKLVVR 111
           +    H +A+  L+Q  + V+LVV 
Sbjct: 76  LRNSSHEEAITALRQTPQKVRLVVY 100

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score =  110 bits (277), Expect = 1e-32
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 27  HAHPRVVELPKTD-EGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRG 76
              PR+VE+ +     LG +++GG+         E+   I+I +++    A +   LK G
Sbjct: 13  WGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTG 72

Query: 77  DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
           D++L V+GV ++   H +AVE +K A   V  +V+    
Sbjct: 73  DKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score =  109 bits (274), Expect = 1e-32
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 33  VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
            +L K+  G GF V+GG E +  + I  ++  G A   G ++ GD ++SVN   V G  H
Sbjct: 4   TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63

Query: 93  GKAVELLKQA--QRSVKLVVR 111
            + V++ +      SV L + 
Sbjct: 64  AQVVKIFQSIPIGASVDLELC 84

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score =  109 bits (274), Expect = 2e-32
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 26  GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
           G    +++ L K  E LG  +    EQ   I ++RI+ GG ADR G +  GD+L  VNG+
Sbjct: 1   GSDSVKIIRLVKNREPLGATIKKD-EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGI 59

Query: 86  SVEGEDHGKAVELLKQAQRSVKLVV 110
            VE +   + +++L Q+Q ++   +
Sbjct: 60  PVEDKRPEEIIQILAQSQGAITFKI 84

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  109 bits (275), Expect = 2e-32
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 30  PRVVELPKTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
            + + L +  +GLGF+++GG      + PIY+  +   G A   G LKRGDQ+++VNG S
Sbjct: 26  CKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS 85

Query: 87  VEGEDHGKAVELLKQAQRSVKLVVRYTP 114
           +EG  H +AV +LK+ + +V L+V  + 
Sbjct: 86  LEGVTHEEAVAILKRTKGTVTLMVLSSD 113

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score =  109 bits (275), Expect = 2e-32
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 4/94 (4%)

Query: 29  HPRVVELPK-TDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
             R VE+ K   + LG ++ GG      + PI+I+ + P GVA +   L+ GD+++++ G
Sbjct: 24  GLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICG 83

Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
            S EG  H +AV LLK A  S+++ V     V E
Sbjct: 84  TSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSE 117

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score =  109 bits (275), Expect = 2e-32
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 5/100 (5%)

Query: 22  AASEGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRG 76
              +       + L +   GLGFN++GG +Q     +S IY+SRI   G A   G L+ G
Sbjct: 10  GRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEG 69

Query: 77  DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
           D++LSVNG  ++   H  AV+L + A  +V L V++  +V
Sbjct: 70  DKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQV 109

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score =  109 bits (274), Expect = 2e-32
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 22  AASEGHAHPRVVEL--PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQL 79
            +S      R+V L   K  EGLGF++ GG E    IY+S + PG +A++  GL+ GDQ+
Sbjct: 1   GSSGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEK-EGLRVGDQI 59

Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
           L VN  S+    H +AV+ LK +++ V  V     
Sbjct: 60  LRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGR 94

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score =  108 bits (273), Expect = 3e-32
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 3/98 (3%)

Query: 20  AFAASEGHAHPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQ 78
             + S G      V + K+  G LGF+V GG E    I++S++  G  A+R  GL  GD+
Sbjct: 1   GSSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAER-AGLCVGDK 59

Query: 79  LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
           +  VNG+S+E    G AV++L  + R + ++VR     
Sbjct: 60  ITEVNGLSLESTTMGSAVKVLTSSSR-LHMMVRRMGSG 96

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score =  108 bits (273), Expect = 3e-32
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 7/93 (7%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
              + + +   GLG ++ GGK        +  I+ISR+   G A R  G++ GD+LL VN
Sbjct: 4   ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDKLLEVN 62

Query: 84  GVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
           GV+++G +H +AVE L+ A  +V++ V    + 
Sbjct: 63  GVALQGAEHHEAVEALRGAGTAVQMRVWRERET 95

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score =  108 bits (273), Expect = 3e-32
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 10/95 (10%)

Query: 28  AHPRVVELPKTD-EGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGD 77
             PR VEL +   + LG +++GG+         E    I+I  ++    A ++G LK GD
Sbjct: 3   MQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGD 62

Query: 78  QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
           +++ V+G+ +    H +AVE +++A   V  +V+ 
Sbjct: 63  RIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 97

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score =  109 bits (274), Expect = 3e-32
 Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 14  AKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKE-QNSPIYISRIIPGGVADRHGG 72
           ++     F+  +       +   K +  L   + GG +     + +S +  GG A+RHGG
Sbjct: 2   SEGAATMFSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGG 61

Query: 73  LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS----VKLVVRYTPKVLEEMEMRF 124
           + +GD+++++NG  V      +A   L++A       + LVV   P    + E+ F
Sbjct: 62  VVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELTF 117

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  109 bits (274), Expect = 4e-32
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 23  ASEGHAHPRVVELPKTD-EGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLL 80
                + P +VE+ KT    LG ++     +N S I I RI P  V DR G L  GD +L
Sbjct: 9   TVANASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHIL 68

Query: 81  SVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
           S++G S+E     +A +LL      V+L +   P+
Sbjct: 69  SIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQ 103

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score =  109 bits (273), Expect = 4e-32
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 29  HPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
            P  V L K     +G ++ GG +    +YI ++     A   G +  GD++  VNG S+
Sbjct: 24  VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSI 83

Query: 88  EGEDHGKAVELLKQAQRSVKLVVRY 112
           +G+   +  +++++ +  V +    
Sbjct: 84  KGKTKVEVAKMIQEVKGEVTIHYNK 108

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score =  109 bits (273), Expect = 5e-32
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 26  GHAHPRVVELPKTDEGLGFNVMGGK------EQNSPIYISRIIPGGVADRHGGLKRGDQL 79
           GH     VEL K  EGLG +++G         +   I++  +  GG A R G ++  D L
Sbjct: 1   GHMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60

Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVV-RYTPKVLEEMEMRFDKQR 128
           + V+G S+ G     A  +L+  +  V+ ++ R  P    E+     +  
Sbjct: 61  VEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTL 110

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score =  108 bits (272), Expect = 6e-32
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 5/95 (5%)

Query: 33  VELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           ++L K  EGLGF++         ++PIY+  I+P G A + G LK GD+L+ VNGV + G
Sbjct: 15  IQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAG 74

Query: 90  EDHGKAVELLKQAQRS--VKLVVRYTPKVLEEMEM 122
           +   + V LL+  +    V L+V    +     EM
Sbjct: 75  KSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHPREM 109

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score =  107 bits (270), Expect = 7e-32
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 33  VELPKTDEGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           VEL K  +GLG  + G       + S I++  I      +  G ++ GDQ+++V+G +++
Sbjct: 8   VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67

Query: 89  GEDHGKAVELLKQAQRSVKLVVRYTP 114
           G  + +AVE+L+   ++V L +    
Sbjct: 68  GFTNQQAVEVLRHTGQTVLLTLMRRG 93

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score =  107 bits (270), Expect = 9e-32
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 23  ASEGHAHPRVVELPKTDEGLGFNVMGGK--------EQNSPIYISRIIPGGVADRHGGLK 74
           +S        + L +    LGFN++GG+          +  I++S+I+  G A + GGL+
Sbjct: 2   SSGSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ 61

Query: 75  RGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
             D+++ VNG  +    H +AVE  K A+  + + V     
Sbjct: 62  IHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score =  107 bits (270), Expect = 1e-31
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 32  VVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
            VEL +   GLG  ++ G         +YI  ++PG  A   G L  GD++L VNG S+ 
Sbjct: 11  TVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLL 70

Query: 89  GEDHGKAVELLKQAQRSVKLVVRYTP 114
           G  + +AV+L++   + ++ +V  + 
Sbjct: 71  GLGYLRAVDLIRHGGKKMRFLVAKSD 96

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  108 bits (271), Expect = 1e-31
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 5/84 (5%)

Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           ++L K  +GLGF++ GG        ++ IY+++II GG A + G L+ GD+LL VN  S+
Sbjct: 28  IKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSL 87

Query: 88  EGEDHGKAVELLKQAQRSVKLVVR 111
           E   H +AV +LK     V L V 
Sbjct: 88  EEVTHEEAVAILKNTSEVVYLKVG 111

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score =  107 bits (269), Expect = 1e-31
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 5/84 (5%)

Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           V L K  +GLGF++ GG        ++ IYI++II GG A + G L+ GD+LL+VN  ++
Sbjct: 7   VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 66

Query: 88  EGEDHGKAVELLKQAQRSVKLVVR 111
           +   H +AV  LK     V L V 
Sbjct: 67  QDVRHEEAVASLKNTSDMVYLKVA 90

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score =  107 bits (269), Expect = 2e-31
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 8/103 (7%)

Query: 22  AASEGHAHPRVVELPKTD-EGLGFNVMGGK-------EQNSPIYISRIIPGGVADRHGGL 73
           + S G      V + + + EG GF ++              P  I RII G  ADR   L
Sbjct: 3   SGSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKL 62

Query: 74  KRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
           K GD++L+VNG S+    H   V+L+K A  SV L +    ++
Sbjct: 63  KVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEEL 105

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score =  107 bits (269), Expect = 3e-31
 Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 6/111 (5%)

Query: 5   SPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGK---EQNSPIYISRI 61
           S D  ASA+A + V+  + +E       V L K   GLGF++ GGK     + P+ I+RI
Sbjct: 7   STDSAASASAASDVSVESTAEAT--VCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRI 64

Query: 62  IPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVR 111
             G  +++   ++ GD++L + G +++G    +A  ++K      V +V+R
Sbjct: 65  FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR 115

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score =  109 bits (273), Expect = 3e-31
 Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 26  GHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLL 80
           G      + L + + GLGF++ GG +      +  I+I++IIPGG A + G L+  D +L
Sbjct: 2   GSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSIL 61

Query: 81  SVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
            VN V V    H  AVE LK+A   V+L V       E++   
Sbjct: 62  FVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEI 104

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 97.9 bits (244), Expect = 9e-27
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 27  HAHPRVVELPKTDEGLGFNVMGGKEQNS-----PIYISRIIPGGVADRHGGLKRGDQLLS 81
                 ++L K  +GLGF++ GG           IY+++II GG A + G L+ GD++L+
Sbjct: 98  AEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILA 157

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           VN V +E   H  AV  LK     V L V 
Sbjct: 158 VNSVGLEDVMHEDAVAALKNTYDVVYLKVA 187

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score =  106 bits (267), Expect = 3e-31
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 4/100 (4%)

Query: 24  SEGHAHPRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQL 79
              H  P ++ +  K   G+G +++  K   +    IY+  ++ GG AD  G L  GDQL
Sbjct: 4   GSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQL 63

Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEE 119
           LSV+G S+ G    +A EL+ +    V L V     +  E
Sbjct: 64  LSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRRE 103

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score =  106 bits (266), Expect = 4e-31
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
             ++L K  +GLGF++ GG        ++ IY+++II GG A + G L+ GD+LL+VN V
Sbjct: 5   MEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSV 64

Query: 86  SVEGEDHGKAVELLKQAQRSVKLVVR 111
           S+E   H +AV  LK     V L V 
Sbjct: 65  SLEEVTHEEAVTALKNTSDFVYLKVA 90

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score =  106 bits (266), Expect = 5e-31
 Identities = 28/94 (29%), Positives = 58/94 (61%), Gaps = 4/94 (4%)

Query: 32  VVELPKTDEGLGFNVMGGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
            +   +   GLGF++ GG + +N  I + R+ P G+A + G +++G+++LS+NG S++G 
Sbjct: 19  TILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGT 78

Query: 91  DHGKAVELLKQAQRSVKLVV---RYTPKVLEEME 121
            H  A+ +L+QA+   + V+   + TP+ + ++ 
Sbjct: 79  THHDALAILRQAREPRQAVIVTRKLTPEAMPDLN 112

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score =  106 bits (266), Expect = 5e-31
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 10/94 (10%)

Query: 29  HPRVVELPKTD-EGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQ 78
            PR VEL +   + LG +++GG+         E    I+I  ++    A ++G LK GD+
Sbjct: 24  QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 83

Query: 79  LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
           ++ V+G+ +    H +AVE +++A   V  +V+ 
Sbjct: 84  IVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score =  106 bits (266), Expect = 6e-31
 Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 4/90 (4%)

Query: 29  HPRVVELPKTD-EGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           H +VV + K   E LG  V GG    E + PIY+  + PGGV  R G +K GD LL+V+G
Sbjct: 24  HEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDG 83

Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
           V +      +AV LLK+   S+ L      
Sbjct: 84  VELTEVSRSEAVALLKRTSSSIVLKALEVK 113

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score =  105 bits (265), Expect = 8e-31
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 23  ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
           AS+         L K++ G GF ++GG E +  + +  +IP G A + G ++ GD ++ +
Sbjct: 13  ASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYI 72

Query: 83  NGVSVEGEDHGKAVELLKQAQ--RSVKLVVR 111
           N V V G  H   V+L +     +SV LV+ 
Sbjct: 73  NEVCVLGHTHADVVKLFQSVPIGQSVNLVLC 103

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score =  108 bits (271), Expect = 8e-31
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 27  HAHPRVVELPKTD-EGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
           H     V L      G G  + G        +SP  IS I     A+R G L+ GD++++
Sbjct: 4   HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 63

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 138
           +NG+  E     +A +LL+ +  + K+ +     V E +            ++   +
Sbjct: 64  INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVE 120

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 99.5 bits (248), Expect = 2e-27
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 22  AASEGHAHPRVVELPKTDEGLGFNVMGG--KEQNSPIYISRIIPGGVADRHGGLKRGDQL 79
           +         V    K    LG  +     ++   P+ IS I  G VA R G L+ GD+L
Sbjct: 101 SVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKL 160

Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
           L+++ + ++      AV++L+Q +  VKL +R   
Sbjct: 161 LAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE 195

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score =  105 bits (264), Expect = 9e-31
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 7/88 (7%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
              + + +   GLG ++ GGK        +  I+ISR+   G A R  G++ GD+LL VN
Sbjct: 16  ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDKLLEVN 74

Query: 84  GVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           GV+++G +H +AVE L+ A  +V++ V 
Sbjct: 75  GVALQGAEHHEAVEALRGAGTAVQMRVW 102

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score =  106 bits (265), Expect = 9e-31
 Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 27  HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
               + V L   D   LG  + GG E    IYI+ + PG  A+   GLK GDQ+L VNG 
Sbjct: 18  GGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEG-SGLKVGDQILEVNGR 76

Query: 86  SVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPS 137
           S     H +AV LLK + R + L V+   ++        + +  A    P S
Sbjct: 77  SFLNILHDEAVRLLKSS-RHLILTVKDVGRLPHARTTVDETKWIASSSGPSS 127

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score =  105 bits (263), Expect = 1e-30
 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 30  PRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           PR+V L K     LGFN+ GGK     I+IS++IP   A R  GL+ GDQ+L+VN V  +
Sbjct: 16  PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHR-AGLQEGDQVLAVNDVDFQ 74

Query: 89  GEDHGKAVELLKQAQRSVKLVVRYTP 114
             +H KAVE+LK A R + + VR+  
Sbjct: 75  DIEHSKAVEILKTA-REISMRVRFFS 99

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score =  105 bits (263), Expect = 1e-30
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 23  ASEGHAHPRVVELPKTDEGLGFNVMGGKEQN-----SPIYISRIIPGGVADRHGGLKRGD 77
           AS    +   +   K    LG ++ G ++Q+     + IY+  +IPG  A   G ++  D
Sbjct: 8   ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPND 67

Query: 78  QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
           ++L V+ V+V+G      VE+L+ A   V+L++     +LE
Sbjct: 68  KILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLPLLE 108

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score =  106 bits (265), Expect = 1e-30
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 24  SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
           SE        +L K+  G GF V+GG E +  + I  ++  G A   G ++ GD ++SVN
Sbjct: 13  SELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVN 72

Query: 84  GVSVEGEDHGKAVELLKQAQ--RSVKLVVR 111
              V G  H + V++ +      SV L + 
Sbjct: 73  DTCVLGHTHAQVVKIFQSIPIGASVDLELC 102

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score =  105 bits (263), Expect = 1e-30
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSP----IYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
            ++VEL K  +GLGF+++  ++   P    I I  ++  GVA+R GGL  GD+L+SVN  
Sbjct: 16  VKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEY 75

Query: 86  SVEGEDHGKAVELLKQA-QRSVKLVVRYTP 114
            ++     +AVE+LK      V L +   P
Sbjct: 76  CLDNTSLAEAVEILKAVPPGLVHLGICSGP 105

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score =  104 bits (261), Expect = 1e-30
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
              V L       GF + GGK+ N P+ ISRI PG  A +   L +GD +++++GV+ + 
Sbjct: 2   AYSVTLTG-PGPWGFRLQGGKDFNMPLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDT 59

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPK 115
             H +A   +K A  ++ L ++ + +
Sbjct: 60  MTHLEAQNKIKSASYNLSLTLQKSKR 85

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score =  105 bits (263), Expect = 1e-30
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 31  RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
             V L K    GLGF V        P+ IS +I GG A++ G ++ GD +L+VN   +  
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 61

Query: 90  EDHGKAVELLKQAQR--SVKLVVRYTPKVLEEMEMRFDKQ---RTARRRQP 135
             +  A+E+L+       V L++R        +E  F      +T R  QP
Sbjct: 62  LSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 112

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score =  104 bits (261), Expect = 2e-30
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 2/83 (2%)

Query: 31  RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
             + L K   +GLG +++G +  ++ +++S I+ GG+AD  G L +GDQ+L VNG  V  
Sbjct: 6   LTIGLQKKPGKGLGLSIVGKRN-DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRN 64

Query: 90  EDHGKAVELLKQAQRSVKLVVRY 112
                   LLK +  +V L V  
Sbjct: 65  ATQEAVAALLKCSLGTVTLEVGR 87

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score =  104 bits (261), Expect = 2e-30
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 31  RVVELPKTD-EGLGFNVMGGKEQNSP------IYISRIIPGGVADRHGGLKRGDQLLSVN 83
            +V L KT  +  G  ++ G+ ++SP      I+I  I+P   A   G LK GD++LS+N
Sbjct: 7   HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 66

Query: 84  GVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           G  V        ++L+K+A   ++L ++
Sbjct: 67  GKDVRNSTEQAVIDLIKEADFKIELEIQ 94

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score =  103 bits (260), Expect = 4e-30
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 12/101 (11%)

Query: 23  ASEGHAHP--RVVELPKTD-EGLGFNVMGGKE---------QNSPIYISRIIPGGVADRH 70
            S G + P  R + + K   E LG ++ GG            +  I+IS++ P G A R 
Sbjct: 1   GSSGSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRD 60

Query: 71  GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           G L+ G +LL VN  S+ G  HG+AV+LL+    ++ ++V 
Sbjct: 61  GRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVC 101

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score =  102 bits (257), Expect = 6e-30
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 22  AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
            +S     P  V L       GF ++GG++ ++P+ ISR+  G  A     L  GD + +
Sbjct: 1   GSSGSSGMPHSVTLRG-PSPWGFRLVGGRDFSAPLTISRVHAGSKAAL-AALCPGDLIQA 58

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
           +NG S E   H +A   +K     + L V   P
Sbjct: 59  INGESTELMTHLEAQNRIKGCHDHLTLSVSSGP 91

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score =  102 bits (257), Expect = 6e-30
 Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 31  RVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
             V L K D  E LG  ++   ++   ++I  ++ GG+A + G L   D++L++NG  ++
Sbjct: 5   LQVALHKRDSGEQLGIKLVRRTDEP-GVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLK 63

Query: 89  GEDHGKAVELLKQAQRSVKLVVRYTPKVLEEM 120
                 A ++++ +   V L +    K   E+
Sbjct: 64  YGTPELAAQIIQASGERVNLTIARPGKPEIEL 95

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score =  103 bits (258), Expect = 6e-30
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 6/85 (7%)

Query: 33  VELPKTDEGLGFNVMGG------KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
           VEL K ++GLG +++G         +   I++  +  GG A R G ++  DQ++ V+G+S
Sbjct: 13  VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 72

Query: 87  VEGEDHGKAVELLKQAQRSVKLVVR 111
           + G     A  +L+  + +V+ V+ 
Sbjct: 73  LVGVTQNFAATVLRNTKGNVRFVIG 97

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score =  102 bits (257), Expect = 1e-29
 Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 5/88 (5%)

Query: 29  HPRVVELPKTD-EGLGFNVMGGKEQNS---PIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           H  V EL K    GLGF+V+G + +N     I++  I  G VA R G LK  DQ+L++NG
Sbjct: 20  HVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAING 79

Query: 85  VSV-EGEDHGKAVELLKQAQRSVKLVVR 111
            ++ +   H +A+ +L++A+ +V+LV+ 
Sbjct: 80  QALDQTITHQQAISILQKAKDTVQLVIA 107

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score =  103 bits (258), Expect = 1e-29
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 6/117 (5%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPK-TDEGLGFNVMGGKEQN---SPIYIS 59
           GS                  ++G      +++ + +  GLGF+V+  + QN     I++ 
Sbjct: 1   GSSGSSGLGNEDFNSVIQQMAQGR-QIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVK 59

Query: 60  RIIPGGVADRHGGLKRGDQLLSVNGVSV-EGEDHGKAVELLKQAQRSVKLVVRYTPK 115
            + PG VADR   LK  DQ+L++N   + +   H +A+ LL+Q   S++L+V   P 
Sbjct: 60  DVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPV 116

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score =  102 bits (256), Expect = 1e-29
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 28  AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
              + V +      GLG ++  G  Q   I+IS + PG ++    GL+ GDQ++ VNGV 
Sbjct: 14  NKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAE-VGLEIGDQIVEVNGVD 72

Query: 87  VEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
               DH +AV +LK ++     +V    + L   +
Sbjct: 73  FSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTD 107

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score =  102 bits (257), Expect = 2e-29
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 5   SPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRI 61
                   +          ++       ++L K  EGLGF++         ++PIY+  I
Sbjct: 6   HHHHHHHGSENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNI 65

Query: 62  IPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS--VKLVVR 111
           +P G A + G LK GD+L+ VNGV + G+   + V LL+  +    V L+V 
Sbjct: 66  LPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVF 117

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score =  102 bits (256), Expect = 2e-29
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 26  GHAHPRVVELPK----TDEGLGFNVMGGKEQNS-----PIYISRIIPGGVADRHGGLKRG 76
            HA  ++    K    +  GLG  ++GGKE          YI++I+PGG A++ G L  G
Sbjct: 12  PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEG 71

Query: 77  DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
            Q+L  NG+ +  + + +   ++ Q     ++ VR    +
Sbjct: 72  MQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM 111

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score =  104 bits (260), Expect = 2e-29
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 28  AHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
              + V L +   EGLG +V GG E    ++IS +I GG AD   GL+ GD+++ +NG S
Sbjct: 83  RKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADS-VGLQVGDEIVRINGYS 141

Query: 87  VEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
           +    H + + L++  +  V + VR+   +
Sbjct: 142 ISSCTHEEVINLIRTEKT-VSIKVRHIGLI 170

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score =  101 bits (254), Expect = 3e-29
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 8/89 (8%)

Query: 31  RVVELPKTDEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
             VEL K D  LG +V    +        ++  IY+  +IP G A+  G + +GD++L+V
Sbjct: 11  FEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAV 70

Query: 83  NGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           NGVS+EG  H +AVE L+   + V L++ 
Sbjct: 71  NGVSLEGATHKQAVETLRNTGQVVHLLLE 99

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score =  102 bits (255), Expect = 3e-29
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 31  RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
             V L K    GLGF V        P+ IS +I GG A++ G ++ GD +L+VN   +  
Sbjct: 10  ISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 68

Query: 90  EDHGKAVELLKQA--QRSVKLVVRYTPKVLEEMEMRFDKQ---RTARRRQPPS 137
             +  A+E+L+    +  V L++R        +E  F      +T R  QP  
Sbjct: 69  LSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQPLG 121

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score =  101 bits (253), Expect = 4e-29
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 22  AASEGHAHPRVVEL-PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADR-HGGLKRGDQL 79
                H +  ++ + P  +   GFNV GG +Q  P+ +SR+ PG  AD     L  GDQ+
Sbjct: 10  NGGIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQV 69

Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 113
           + +NG  +    H + V  +K +       +   
Sbjct: 70  VLINGRDIAEHTHDQVVLFIKASCERHSGELMLL 103

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score =  100 bits (251), Expect = 4e-29
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  L K   G GF++ G K      YI  + PG  A++  GL  GD+L+ VNG +VE 
Sbjct: 4   PRLCCLEKGPNGYGFHLHGEKG-KLGQYIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61

Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           E H + V  ++ A  +V+L+V
Sbjct: 62  ETHQQVVSRIRAALNAVRLLV 82

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score =  101 bits (253), Expect = 5e-29
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 27  HAHPRVVELPKTD-EGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
           H     V L      G G  + G        +SP  IS I     A+R G L+ GD++++
Sbjct: 13  HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 72

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEE 119
           +NG+  E     +A +LL+ +  + K+ +     V E 
Sbjct: 73  INGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAES 110

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score =  100 bits (252), Expect = 6e-29
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 9/97 (9%)

Query: 23  ASEGHAHPRVVELPKTDE-GLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKR 75
            S        V L +    G G  + GG++        + I IS ++ GG A+  G L+ 
Sbjct: 1   GSHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE--GQLQE 58

Query: 76  GDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
            D++  VNGVS++  +H  AV+ L+++ ++ K+ +R 
Sbjct: 59  NDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR 95

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score =  101 bits (252), Expect = 6e-29
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)

Query: 24  SEGHAHPRVVEL-PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADR-HGGLKRGDQLLS 81
              H +  ++ + P  +   GFNV GG +Q  P+ +SR+ PG  AD     L  GDQ++ 
Sbjct: 10  GIPHDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVL 69

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT 113
           +NG  +    H + V  +K +       +   
Sbjct: 70  INGRDIAEHTHDQVVLFIKASCERHSGELMLL 101

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score =  100 bits (251), Expect = 6e-29
 Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 7/108 (6%)

Query: 23  ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
           +S     PR+  L K     GF++   + +   +Y++ I P GVA R  G+   D L+ V
Sbjct: 2   SSGSSGQPRLCYLVKEGGSYGFSLKTVQGKK-GVYMTDITPQGVAMR-AGVLADDHLIEV 59

Query: 83  NGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTA 130
           NG +VE   H + VE +K++   V  ++     V +E + R  +Q++ 
Sbjct: 60  NGENVEDASHEEVVEKVKKSGSRVMFLL-----VDKETDKRHVEQKSG 102

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 99.7 bits (249), Expect = 1e-28
 Identities = 32/81 (39%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PRVV + K   G GF +  G EQ     I  I PG  A+   GLK  D +++VNG SVE 
Sbjct: 6   PRVVVIKKGSNGYGFYLRAGPEQK-GQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEA 63

Query: 90  EDHGKAVELLKQAQRSVKLVV 110
            DH   VE++++      L+V
Sbjct: 64  LDHDGVVEMIRKGGDQTTLLV 84

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 99.3 bits (248), Expect = 2e-28
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  L K  +G GFN+   K +    YI  + PG  A R  GL+  D+L+ VNG +VEG
Sbjct: 5   PRLCHLRKGPQGYGFNLHSDKSRP-GQYIRSVDPGSPAAR-SGLRAQDRLIEVNGQNVEG 62

Query: 90  EDHGKAVELLKQAQRSVKLVV 110
             H + V  +K  +   +L+V
Sbjct: 63  LRHAEVVASIKAREDEARLLV 83

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 99.3 bits (248), Expect = 2e-28
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 19  AAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQ 78
            +  +S G      V+L       GF + GG E   P+ +S+I  GG A     ++ GD+
Sbjct: 1   GSSGSSGGSFQYVPVQLQG-GAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDE 59

Query: 79  LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
           L+++NG  + G    +A+ L+K + R +KL+VR     
Sbjct: 60  LVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSG 96

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 99.5 bits (248), Expect = 3e-28
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 31  RVVELPK--TDEGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQL 79
           R V L K  T++ LGF +  G          E+   I+ISR++PGG+A   G L   D++
Sbjct: 31  RRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEV 90

Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           L VNG+ V G+   +  +++    R++ + VR
Sbjct: 91  LEVNGIEVSGKSLDQVTDMMIANSRNLIITVR 122

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 98.7 bits (246), Expect = 3e-28
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 23  ASEGHAHP--RVVELPK-TDEGLGFNVMGG--KEQNSPIYISRIIPGGVADRHGGLKRGD 77
            S G +    R V L K   EGLG  ++            I+ ++ GG A+R G L  GD
Sbjct: 1   GSSGSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGD 60

Query: 78  QLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV 116
           +L ++NG S+ G         +++   Q SV L + + P V
Sbjct: 61  RLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPPV 101

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 99.1 bits (247), Expect = 3e-28
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 7/92 (7%)

Query: 24  SEGHAHP---RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQL 79
           S GH      ++V + K  D  LG  V   + +   + ISRI+ GG A++ G L  GD++
Sbjct: 17  SIGHYGGETVKIVRIEKARDIPLGATV---RNEMDSVIISRIVKGGAAEKSGLLHEGDEV 73

Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           L +NG+ + G+D  +  +LL     ++  V+ 
Sbjct: 74  LEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI 105

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 98.1 bits (245), Expect = 4e-28
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 29  HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
               V L       GF + GGK+ N P+ IS +  GG A +   ++ GD +LS++G++ +
Sbjct: 3   SNYSVSL-VGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQ-ANVRIGDVVLSIDGINAQ 60

Query: 89  GEDHGKAVELLKQAQRSVKLVVR 111
           G  H +A   +K    S+ + ++
Sbjct: 61  GMTHLEAQNKIKGCTGSLNMTLQ 83

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 99.4 bits (248), Expect = 5e-28
 Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 6/99 (6%)

Query: 19  AAFAASEGHAHPRVVELPKTD-EGLGFNVMGGK-----EQNSPIYISRIIPGGVADRHGG 72
           ++  +         VEL + D + LG  ++G        + S IY+  +IPG  A  +G 
Sbjct: 5   SSGGSDSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGH 64

Query: 73  LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           ++  D++++V+GV+++G  +   VE+L+ A + V L + 
Sbjct: 65  IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLV 103

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 98.3 bits (245), Expect = 5e-28
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNSP-IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
            +V + K+   LG  + GG     P   I  I  GG A   G LK G  +L VNG+++ G
Sbjct: 8   TLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRG 67

Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           ++H +A  ++ +A ++     
Sbjct: 68  KEHREAARIIAEAFKTKDRDY 88

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 97.8 bits (244), Expect = 6e-28
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 33  VELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
           V+L K   + LG ++   +       I+ +I G   +    L+RGD +   NG ++EG  
Sbjct: 12  VDLMKKAGKELGLSLSPNEI---GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 68

Query: 92  HGKAVELLKQAQRSVKLVV-RYTP 114
              +  L K A   V + V R  P
Sbjct: 69  FQVSYALFKGANGKVSMEVTRPKP 92

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 97.8 bits (244), Expect = 8e-28
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 33  VELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
           V+L K   + LG ++   +       I+ +I G   +    L+RGD +   NG ++EG  
Sbjct: 6   VDLMKKAGKELGLSLSPNE---IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLP 62

Query: 92  HGKAVELLKQAQRSVKLVV-RYTP 114
                 L K A   V + V R  P
Sbjct: 63  FQVCYALFKGANGKVSMEVTRPKP 86

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 98.3 bits (245), Expect = 9e-28
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 30  PRVVELPKTD-EGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
              V L K    G G  V GG++        + I IS ++PGG AD  G L+  D+++ V
Sbjct: 15  QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV 72

Query: 83  NGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
           NG  +E   H  AV+ L+++ +   +VV+   KV
Sbjct: 73  NGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV 106

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 97.3 bits (243), Expect = 9e-28
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           P++  L K + G GF++   +      +I  +  GG AD   GL+  D ++ VNGV+V  
Sbjct: 4   PKLCRLAKGENGYGFHLNAIRGLP-GSFIKEVQKGGPADL-AGLEDEDVIIEVNGVNVLD 61

Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           E + K V+ ++ + ++V L+V
Sbjct: 62  EPYEKVVDRIQSSGKNVTLLV 82

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 97.0 bits (242), Expect = 1e-27
 Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
              V++       GF + GG++ ++PI ++++   G A     L+ GD ++++NG S EG
Sbjct: 3   ALTVDVAG-PAPWGFRITGGRDFHTPIMVTKVAERGKAKD-ADLRPGDIIVAINGESAEG 60

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKV 116
             H +A   ++Q+   ++L +     +
Sbjct: 61  MLHAEAQSKIRQSPSPLRLQLDRITSL 87

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 97.5 bits (243), Expect = 1e-27
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNSP--IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
             V     + GLG  ++GG  +N    +YI  +IPGG   + G LK GDQL+S+N  S+ 
Sbjct: 16  FRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMI 75

Query: 89  GEDHGKAVELLKQAQRSVKLVVR 111
           G    +A  ++ +A+   +    
Sbjct: 76  GVSFEEAKSIITRAKLRSESPWE 98

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 96.6 bits (241), Expect = 2e-27
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 29  HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
               V L       GF + GGK+ N P+ ISR+ PGG A +  G+  GD +LS++G +  
Sbjct: 3   DSFKVVLEG-PAPWGFRLQGGKDFNVPLSISRLTPGGKAAQ-AGVAVGDWVLSIDGENAG 60

Query: 89  GEDHGKAVELLKQAQRSVKLVVR 111
              H +A   ++     + L + 
Sbjct: 61  SLTHIEAQNKIRACGERLSLGLS 83

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 97.2 bits (242), Expect = 2e-27
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 6/118 (5%)

Query: 5   SPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPG 64
                 S+     +            ++V+  K D  +G  + GG +    I+++ ++  
Sbjct: 5   HHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGD-SVGLRLAGGNDV--GIFVAGVLED 61

Query: 65  GVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS--VKLVVRYTPKVLEEM 120
             A + G L+ GDQ+L VN V        +AV  L    +   V ++ +    V   +
Sbjct: 62  SPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRI 118

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 96.7 bits (241), Expect = 2e-27
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 28  AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           +  RVV + K   G GF +  G EQ     I  I PG  A+   GLK  D +++VNG SV
Sbjct: 5   SSGRVVVIKKGSNGYGFYLRAGPEQK-GQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSV 62

Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTP 114
           E  DH   VE++++      L+V    
Sbjct: 63  EALDHDGVVEMIRKGGDQTTLLVLDKE 89

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 96.7 bits (241), Expect = 2e-27
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
             V LP      GF + GG + N P+ I+RI PG  A     L  GD +L+++G   E  
Sbjct: 7   GNVVLPG-PAPWGFRLSGGIDFNQPLVITRITPGSKAAA-ANLCPGDVILAIDGFGTESM 64

Query: 91  DHGKAVELLKQAQRSVKLVVR 111
            H  A + +K A   + L + 
Sbjct: 65  THADAQDRIKAASYQLCLKID 85

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 95.8 bits (239), Expect = 3e-27
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 5/85 (5%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
            R VE+ +   G GF + G      P  +S ++ G  AD   GL+ GDQ+L+VN ++V+ 
Sbjct: 3   VRSVEVARGRAGYGFTLSGQA----PCVLSCVMRGSPADF-VGLRAGDQILAVNEINVKK 57

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTP 114
             H   V+L+ +    + +V+    
Sbjct: 58  ASHEDVVKLIGKCSGVLHMVIAEGV 82

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 96.2 bits (240), Expect = 3e-27
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQN--SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           PR + L K  +G GF +   K  +     ++  + PG  A +  G++ GD+L++V G SV
Sbjct: 4   PRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKK-AGMQAGDRLVAVAGESV 62

Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           EG  H + V  ++     V L V
Sbjct: 63  EGLGHEETVSRIQGQGSCVSLTV 85

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 96.3 bits (240), Expect = 3e-27
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  + K   G GFN+   K +    +I  + P   A+   GL+  D+++ VNGV +EG
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKP-GQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEG 67

Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           + HG  V  ++      KL+V
Sbjct: 68  KQHGDVVSAIRAGGDETKLLV 88

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 95.5 bits (238), Expect = 4e-27
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 30  PRVVELPK--TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
              V L K    E  GF+V  G  +   +Y+  I P G  D  GGLK  D+LL VN V  
Sbjct: 7   LHKVTLYKDSGMEDFGFSVADGLLEKG-VYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRT 64

Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTP 114
              D    V L+ ++   + LV+   P
Sbjct: 65  RDFDCCLVVPLIAESGNKLDLVISRNP 91

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 97.7 bits (243), Expect = 5e-27
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 33  VELPKTDEGLGFNVMGGK------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
           VEL K  EGLG +++G         +   I++  +  GG A R G ++  D L+ V+G S
Sbjct: 84  VELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS 143

Query: 87  VEGEDHGKAVELLKQAQRSVKLVVR 111
           + G     A  +L+  +  V+ ++ 
Sbjct: 144 LVGVTQSFAASVLRNTKGRVRFMIG 168

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 95.5 bits (238), Expect = 7e-27
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 33  VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
           V L       GF + GGK+ N P+ IS +  GG A +   ++ GD +LS++G+S +G  H
Sbjct: 9   VSLVG-PAPWGFRLQGGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTH 66

Query: 93  GKAVELLKQAQRSVKLVVRYTPKV 116
            +A   +K    S+ + ++     
Sbjct: 67  LEAQNKIKACTGSLNMTLQRASAA 90

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 94.3 bits (235), Expect = 1e-26
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 33  VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
           V L K+     + +  G    S I++  +   G+A + G L  GD +L +NG   E    
Sbjct: 4   VLLMKSRANEEYGLRLG----SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSL 59

Query: 93  GKAVELLKQAQRSVKLVVR 111
             A +L+++++  ++LVV 
Sbjct: 60  TDARKLIEKSRGKLQLVVL 78

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 94.3 bits (235), Expect = 2e-26
 Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
              V++       GF + GG++ ++PI ++++   G A+    L+ GD ++++NG S E 
Sbjct: 7   GLTVDVAG-PAPWGFRISGGRDFHTPIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAEN 64

Query: 90  EDHGKAVELLKQAQRSVKLVVR 111
             H +A   ++Q+   ++L + 
Sbjct: 65  MLHAEAQSKIRQSASPLRLQLD 86

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 93.6 bits (233), Expect = 2e-26
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 28  AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           A P  V L K+ +   + +       S I++  I    +A R G ++ GD +L +NG   
Sbjct: 1   AKPTKVTLVKSAKNEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVT 56

Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTPK 115
           E      A  L+++++  +K+VV+   +
Sbjct: 57  ENMSLTDAKTLIERSKGKLKMVVQRDER 84

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 93.6 bits (233), Expect = 3e-26
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 31  RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           R+++  K T+E +G  +     +     ++RI+ GG+  R G L  GD++L +NG +V  
Sbjct: 14  RLIQFEKVTEEPMGICLKLN--EKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTN 71

Query: 90  EDHGKAVELLKQAQRSVKLVV 110
               +  + +K+ +  + L V
Sbjct: 72  HSVDQLQKAMKETKGMISLKV 92

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 94.1 bits (234), Expect = 4e-26
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 22  AASEGHAHPRV---------VELPKTD--EGLGFNVMGG--KEQNSPIYISRIIPGGVAD 68
           + S G  H  +         V+L + +  + LG  V      E +  IYIS I P  +A 
Sbjct: 3   SGSSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAA 62

Query: 69  RHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
           + G ++ GD+++ +NG+ V+  +   A+   ++ +    L+ R   ++ E   
Sbjct: 63  KDGRIREGDRIIQINGIEVQNREEAVALLTSEENKNFSLLIARPELQLDEGWM 115

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 94.1 bits (234), Expect = 5e-26
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 14/116 (12%)

Query: 10  ASATAKATVAAFAASEGHAHPRVVELPKTD---EGLGFNVMGGKEQ----NSPIYISRII 62
            S+  K     +A S   +    +E+P  D    GLG ++ G K +    +  I+I  II
Sbjct: 4   GSSGLKGEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSII 63

Query: 63  PGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-------QRSVKLVVR 111
            GG A + G L+  DQL++VNG ++ G+ + +A+E L+++       +  ++LV+ 
Sbjct: 64  HGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVIL 119

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 93.8 bits (233), Expect = 6e-26
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  + K   G GFN+   K +    +I  + P   A+   GL+  D+++ VNGV +EG
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKP-GQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEG 67

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 138
           + HG  V  ++      KL+V     V  E +  F K R    ++  + 
Sbjct: 68  KQHGDVVSAIRAGGDETKLLV-----VDRETDEFFKKCRVIPSQEHLNG 111

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score =  100 bits (250), Expect = 7e-26
 Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 22  AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
              +    PR + + +   GLGFN++GG++    I+IS I+ GG AD  G L++GDQ+LS
Sbjct: 300 GEEDIPREPRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILS 358

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPS 137
           VNGV +    H +A   LK A ++V ++ +Y P+     E +    R         
Sbjct: 359 VNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLG 414

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 96.1 bits (238), Expect = 3e-24
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 5   SPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYIS 59
           SP V  +            +EG      + L + + GLGF++ GG +      +  I+I+
Sbjct: 35  SPPVIVNTDTLEAPGYVNGTEGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFIT 94

Query: 60  RIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
           +IIPGG A + G L+  D +L VN V V    H  AVE LK+A   V+L V  
Sbjct: 95  KIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMR 147

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 61.8 bits (149), Expect = 2e-12
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 27  HAHPRVVELPKTDEGLGFNVMGGK-----EQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
                 ++L K  +GLGF++ GG        ++ IY+++II GG A + G L+ GD++L+
Sbjct: 152 AEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILA 211

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 138
           VN V +E   H  AV  LK     V L V                  T+  +   ++
Sbjct: 212 VNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNE 268

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 91.7 bits (228), Expect = 1e-25
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 39  DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
               GF ++GGK+   P+ ISR+ PG  A     L  GD + +++G +     H +A   
Sbjct: 12  PGPWGFRLVGGKDFEQPLAISRVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEAQNR 70

Query: 99  LKQAQRSVKLVVR 111
           +K    ++ L V 
Sbjct: 71  IKGCTDNLTLTVA 83

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 91.7 bits (228), Expect = 2e-25
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)

Query: 23  ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNS--------PIYISRIIPGGVADRHGGLK 74
             E       V + K D  LGF++ GG              I+++R+ P G A     L+
Sbjct: 5   GHELAKQEIRVRVEK-DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQ 61

Query: 75  RGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
            GD+++  NG S    +HG+AV LLK  Q +V+L++ 
Sbjct: 62  PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 91.3 bits (227), Expect = 2e-25
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 3/82 (3%)

Query: 31  RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           R+V+  K TDE +G  +   +   +   ++RI+ GG+  R G L  GD++  +NG+SV  
Sbjct: 3   RLVQFQKNTDEPMGITLKMNEL--NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVAN 60

Query: 90  EDHGKAVELLKQAQRSVKLVVR 111
           +   +  ++L++ + S+   + 
Sbjct: 61  QTVEQLQKMLREMRGSITFKIV 82

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 91.7 bits (228), Expect = 3e-25
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 33  VELPK-TDEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           V L       LG +++G   +  +  IYI  I+ GG     G ++ GD LL VN ++ E 
Sbjct: 9   VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFEN 68

Query: 90  EDHGKAVELLKQAQRS---VKLVVR 111
             +  AV +L+        + L V 
Sbjct: 69  MSNDDAVRVLRDIVHKPGPIVLTVA 93

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 90.9 bits (226), Expect = 3e-25
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
            R + +P+  +G GF +        P+ +  +  GG A+R  GL++ D +L +N   VE 
Sbjct: 4   YRQITIPRGKDGFGFTICCDS----PVRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEH 58

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
               +    ++     + L+V      ++
Sbjct: 59  WKCVELAHEIRSCPSEIILLVWRMVPQVK 87

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 95.6 bits (237), Expect = 3e-25
 Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 1/111 (0%)

Query: 28  AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
              R V + K D  GLG ++ GG+E   PI IS+I  G  AD+   L  GD +LSVNG  
Sbjct: 76  LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGED 135

Query: 87  VEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPS 137
           +    H +AV+ LK+  + V L V+Y  +V    +             P S
Sbjct: 136 LSSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPAS 186

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 90.9 bits (226), Expect = 4e-25
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 22  AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
           + S G  H   ++     +  GF++      + P+ +  +  GG A   G L  GDQ+L 
Sbjct: 3   SGSSGVRHTVKIDKDTLLQDYGFHISE----SLPLTVVAVTAGGSAH--GKLFPGDQILQ 56

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           +N    E     +AV++L++A+ S+ + V 
Sbjct: 57  MNNEPAEDLSWERAVDILREAEDSLSITVV 86

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 91.8 bits (228), Expect = 4e-25
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNS---PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
                  +   LG  V+GGK   S     +I+++  G +AD  G L+ GD++L  NG  +
Sbjct: 39  DGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLL 98

Query: 88  EGEDHGKAVELLKQAQRS--VKLVVR 111
           +G    +   ++ +++    V+LVV 
Sbjct: 99  QGATFEEVYNIILESKPEPQVELVVS 124

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 90.4 bits (225), Expect = 4e-25
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 22  AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
            +S      R V + K   G GF V G +     + +  + PGG A +  G+K GD+++ 
Sbjct: 1   GSSGSSGVQRCVIIQKDQHGFGFTVSGDR----IVLVQSVRPGGAAMK-AGVKEGDRIIK 55

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
           VNG  V    H + V+L+K        ++  + 
Sbjct: 56  VNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSS 88

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 89.4 bits (222), Expect = 1e-24
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query: 37  KTDEGLGFNVMGGKEQNS--------PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           + D  LGF++ GG              I+++R+ P G A     L+ GD+++  NG S  
Sbjct: 10  EKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFI 67

Query: 89  GEDHGKAVELLKQAQRSVKLVVR 111
             +HG+AV LLK  Q +V+L++ 
Sbjct: 68  NIEHGQAVSLLKTFQNTVELIIV 90

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 89.0 bits (221), Expect = 2e-24
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 26  GHAHPRVVELPKTD-EGLGFNVMGGKEQNS-------PIYISRIIPGGVADRHGGLKRGD 77
           G    +V+ L K D +  GF +      +          +++R+     A    GL  GD
Sbjct: 1   GSQQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQL-AGLTPGD 59

Query: 78  QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY 112
            + SVNG++VEG  H + V+++K +   ++L   Y
Sbjct: 60  TIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY 94

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 88.5 bits (220), Expect = 2e-24
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 26  GHAHPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           G   PR + + K   G +GF    GK       I+ I+    A R  GL     +  +NG
Sbjct: 1   GAMDPRTITMHKDSTGHVGFIFKNGK-------ITSIVKDSSAAR-NGLLTEHNICEING 52

Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVV 110
            +V G    +  ++L  +   V + +
Sbjct: 53  QNVIGLKDSQIADILSTSGTVVTITI 78

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 88.6 bits (220), Expect = 3e-24
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
            + V + K+++ LG  +          +I RI  GGV D    +  GD + S+NG ++ G
Sbjct: 6   EKEVNVYKSEDSLGLTITDNG--VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVG 63

Query: 90  EDHGKAVELLKQAQRSVKLVVR 111
             H    + LK+ ++     ++
Sbjct: 64  WRHYDVAKKLKELKKEELFTMK 85

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 91.5 bits (227), Expect = 3e-24
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 8   VRASATAKATVAAFAASEGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGV 66
              +     T+  F A         V+L K   + LG ++   +       I+ +I G  
Sbjct: 92  FHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEI---GCTIADLIQGQY 148

Query: 67  ADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV-RYTPKVLEEM 120
            +    L+RGD +   NG ++EG        L K A   V + V R  P +  E 
Sbjct: 149 PEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPTLRTEA 203

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 82.6 bits (204), Expect = 8e-21
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 32  VVELPKTDEGLGFNVMGGKEQN--SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           ++EL    + +G  V GGK  +  +   I+ + P G       LK  D +  +NG  +  
Sbjct: 21  LIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHV 80

Query: 90  ED--HGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARR 132
                 K  +L          +  +     E  +   D  + A +
Sbjct: 81  GSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGK 125

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 88.1 bits (219), Expect = 3e-24
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 33  VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
           V L K+ +   + +       S I++  I    +A R G ++ GD +L +NG   E    
Sbjct: 4   VTLVKSRKNEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSL 59

Query: 93  GKAVELLKQAQRSVKLVVR 111
             A  L+++++  +K+VV+
Sbjct: 60  TDAKTLIERSKGKLKMVVQ 78

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 88.7 bits (220), Expect = 4e-24
 Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 3/106 (2%)

Query: 30  PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           PR  +L K + +  GF +   K+ +    I  I  G  A++  GL  GD++L +NGV V+
Sbjct: 2   PRESKLSKQEGQNYGFFLRIEKDTD-GHLIRVIEEGSPAEK-AGLLDGDRVLRINGVFVD 59

Query: 89  GEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQ 134
            E+H + VEL++++  SV L+V       + ++ + D +   +  +
Sbjct: 60  KEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQVDLKELDQEAK 105

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 91.8 bits (227), Expect = 4e-24
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  + K   G GFN+   K +    +I  + P   A+   GL+  D+++ VNGV +EG
Sbjct: 10  PRLCTMKKGPSGYGFNLHSDKSKP-GQFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEG 67

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPSQ 138
           + HG  V  ++      KL+V        E +  F K R    ++  + 
Sbjct: 68  KQHGDVVSAIRAGGDETKLLVVD-----RETDEFFKKCRVIPSQEHLNG 111

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 89.2 bits (221), Expect = 4e-24
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 22  AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
           A+          +L   + GLG  V+        + IS +I  G A   G L+ GD L+S
Sbjct: 20  ASVSSLNKVIQTKLTVGNLGLGLVVIQNGP---YLQISHLINKGAAASDGILQPGDVLIS 76

Query: 82  VNGVSVEGEDHGKAVELLKQAQR--SVKLVVR 111
           V   +V G    + ++LL+       +++   
Sbjct: 77  VGHANVLGYTLREFLKLLQNITIGTVLQIKAY 108

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 89.3 bits (221), Expect = 4e-24
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 14/132 (10%)

Query: 3   LGSPDVRASATAKATVAAFAASEGHAHPRVVELPKTD-EGLGFNVMGGKEQN-------- 53
           +GS       +    V   + S+     + V L K D EG GF + G K Q         
Sbjct: 1   MGSSHHHHHHSQDPLVPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPT 60

Query: 54  ----SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV 109
               +  Y+  +  GGVA R  GL+ GD L+ VNG +V    H + V +++Q   ++ + 
Sbjct: 61  PAFPALQYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 119

Query: 110 VRYTPKVLEEME 121
           V    +  +  E
Sbjct: 120 VVMVTRHPDMDE 131

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 88.7 bits (220), Expect = 4e-24
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 29  HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           +PR  +L K + +  GF +   K+ +    I  I  G  A++  GL  GD++L +NGV V
Sbjct: 13  NPRECKLSKQEGQNYGFFLRIEKDTD-GHLIRVIEEGSPAEK-AGLLDGDRVLRINGVFV 70

Query: 88  EGEDHGKAVELLKQAQRSVKLVV 110
           + E+H + VEL++++  SV L+V
Sbjct: 71  DKEEHAQVVELVRKSGNSVTLLV 93

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 88.3 bits (219), Expect = 6e-24
 Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 27  HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
            + PR +     +  LGF + G     +P+ +  + P   A    G + GD ++S+  V 
Sbjct: 21  QSMPRSIRFTAEEGDLGFTLRGN----APVQVHFLDPYCSASV-AGAREGDYIVSIQLVD 75

Query: 87  VEGEDHGKAVELLKQA-QRSVKLVV 110
            +     + ++LLK   +  +++ V
Sbjct: 76  CKWLTLSEVMKLLKSFGEDEIEMKV 100

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 86.3 bits (214), Expect = 3e-23
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 22  AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
                +     + + +  +G GF +       SP+ +  +  GG A+R  GL++ D +L 
Sbjct: 8   EGDPENGEKLQITIRRGKDGFGFTICCD----SPVRVQAVDSGGPAER-AGLQQLDTVLQ 62

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
           +N   VE     +    ++     + L+V    
Sbjct: 63  LNERPVEHWKCVELAHEIRSCPSEIILLVWRVS 95

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 86.0 bits (213), Expect = 4e-23
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 28  AHPRVVELPKTD-EGLGFNVMGGKEQNS-------PIYISRIIPGGVADRHGGLKRGDQL 79
           +  ++V + K D E  GF +   + QN           I +I     A    GL+ GD L
Sbjct: 14  SQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHC-AGLQAGDVL 72

Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
            ++NGVS EG  + + V+L++ +   + +  
Sbjct: 73  ANINGVSTEGFTYKQVVDLIRSSGNLLTIET 103

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 85.7 bits (212), Expect = 5e-23
 Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 14/109 (12%)

Query: 23  ASEGHAHPRVVELPKTD-EGLGFNVMGGKEQN------------SPIYISRIIPGGVADR 69
            S+     + V L K D EG GF + G K Q             +  Y+  +  GGVA R
Sbjct: 1   GSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWR 60

Query: 70  HGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
             GL+ GD L+ VNG +V    H + V +++Q   ++ + V    +  +
Sbjct: 61  -AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPD 108

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 86.0 bits (213), Expect = 2e-22
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 26  GHAHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           G   PR V L K  D  +G  +      ++ I++  +     A    GL+ GDQ+L +NG
Sbjct: 1   GAMDPREVILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASL-VGLRFGDQVLQING 56

Query: 85  VSVEGEDHGKAVELLKQAQRS-VKLVVRYTPKVLEEMEMRFDKQ 127
            +  G    KA ++LKQA    + + +R  P        +    
Sbjct: 57  ENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTG 100

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 56.0 bits (135), Expect = 6e-11
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 29  HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
              +     +   +GF    G        I+ I+    A R  GL     +  +NG +V 
Sbjct: 89  ERTITMHKDSTGHVGFIFKNG-------KITSIVKDSSAAR-NGLLTEHNICEINGQNVI 140

Query: 89  GEDHGKAVELLKQAQRSVKLVV 110
           G    +  ++L  +   V + +
Sbjct: 141 GLKDSQIADILSTSGTVVTITI 162

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 82.9 bits (205), Expect = 4e-22
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 5/86 (5%)

Query: 31  RVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           R+V + K   E LG      + +   + I+RI+ GG+  + G L  GD +  VNG  V G
Sbjct: 8   RMVGIRKTAGEHLGVTF---RVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-G 63

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPK 115
            D     ELL+ A  SV L +   P 
Sbjct: 64  SDPRALQELLRNASGSVILKILSGPS 89

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 83.2 bits (206), Expect = 5e-22
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQN-------SPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
             + +  + +  GF++   +              +  +  G  A    GL+ GD +  +N
Sbjct: 4   PPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQE-AGLRAGDLITHIN 62

Query: 84  GVSVEGEDHGKAVELLKQAQRSVKLVV 110
           G SV G  H   VELL ++   + L  
Sbjct: 63  GESVLGLVHMDVVELLLKSGNKISLRT 89

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 82.3 bits (204), Expect = 7e-22
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 6/85 (7%)

Query: 29  HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
               V + K   G GF +           + +I+    + R  GLK GD ++ VN  +V+
Sbjct: 3   ELITVHIVKGPMGFGFTIADSPGGG-GQRVKQIVD---SPRSRGLKEGDLIVEVNKKNVQ 58

Query: 89  GEDHGKAVELLKQAQR--SVKLVVR 111
              H + V++L ++ +   V L+V+
Sbjct: 59  ALTHNQVVDMLVESPKGSEVTLLVQ 83

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 82.1 bits (203), Expect = 7e-22
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 32  VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
           + + P      GF +         I+++ +  G  A+    L+  D+++++N       D
Sbjct: 9   INQTPGKSLDFGFTIKWDIP---GIFVASVEAGSPAEF-SQLQVDDEIIAINNTKFSYND 64

Query: 92  HGKAVELLKQAQRSVKLVVR 111
             +  E + +AQ +  LV+ 
Sbjct: 65  SKEWEEAMAKAQETGHLVMD 84

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 83.2 bits (205), Expect = 1e-21
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 18/102 (17%)

Query: 27  HAHPRVVELPKT----DEGLGFNVMGGKEQ------------NSPIYISRIIPGGVADRH 70
            +  + VE+ K     +  LGF++ GG +Q            +  IY++R+  GG A+  
Sbjct: 21  QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEI- 79

Query: 71  GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVR 111
            GL+ GD+++ VNG  +    H +A + L +  +  V+L+V 
Sbjct: 80  AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVT 121

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 82.5 bits (204), Expect = 1e-21
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 29  HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
            PR +     +  LGF + G     +P+ +  + P   A    G K GD ++S+ GV  +
Sbjct: 15  PPRGIHFTVEEGDLGFTLRGN----TPVQVHFLDPHCSASL-AGAKEGDYIVSIQGVDCK 69

Query: 89  GEDHGKAVELLKQA-QRSVKLVV 110
                + ++LLK      V++ V
Sbjct: 70  WLTVSEVMKLLKSFGGEEVEMKV 92

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 81.3 bits (201), Expect = 2e-21
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 8/88 (9%)

Query: 23  ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
            + G+    ++  P     LGF+V  G        I  ++ GG+A+R GG++ G +++ +
Sbjct: 7   ETMGNVTTVLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAER-GGVRVGHRIIEI 58

Query: 83  NGVSVEGEDHGKAVELLKQAQRSVKLVV 110
           NG SV    H K V +L  A   + +  
Sbjct: 59  NGQSVVATPHEKIVHILSNAVGEIHMKT 86

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 78.8 bits (194), Expect = 4e-20
 Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 29/116 (25%)

Query: 23  ASEGHAHPRVVELPKTDEGLGFNVMGGK----------------------------EQNS 54
           +S     P+ V L +T +G GF +                                E   
Sbjct: 2   SSGSSGGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMD 61

Query: 55  PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
            I++ ++  GG A    GL  GD+++ VNG SV G+ + + + L++ +  +++L V
Sbjct: 62  TIFVKQVKEGGPAFE-AGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSV 116

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 75.8 bits (186), Expect = 5e-19
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 30  PRVVELPKTD---EGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
            + + + K+D   +  GF++   +E     +Y++ +   G+A +  GLK GD++L +N  
Sbjct: 16  TQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASK-KGLKAGDEILEINNR 74

Query: 86  SVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEM 122
           + +  +     + L   Q S+ L+VR  P++ E +E 
Sbjct: 75  AADALNSSMLKDFLS--QPSLGLLVRTYPELEEGVES 109

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 79.1 bits (194), Expect = 2e-18
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
            ++V+  K  + +G  + GG +    I+++ ++    A + G L+ GDQ+L VN V    
Sbjct: 10  MKLVKFRKG-DSVGLRLAGGND--VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTN 65

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
               +AV  L    +  ++ +    K      + 
Sbjct: 66  IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIV 99

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 72.4 bits (178), Expect = 6e-18
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 22  AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
           + S G A    + + K  +G GF +           + +I+         GL  GD ++ 
Sbjct: 3   SGSSGQAELMTLTIVKGAQGFGFTIADSPT---GQRVKQILD---IQGCPGLCEGDLIVE 56

Query: 82  VNGVSVEGEDHGKAVELLKQAQR--SVKLVVR 111
           +N  +V+   H + V++LK         L++ 
Sbjct: 57  INQQNVQNLSHTEVVDILKDCPIGSETSLIIH 88

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 71.5 bits (175), Expect = 2e-17
 Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 31  RVVELPKTD---EGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
             + + K+D   +  GF++   +E     +Y++ +   G+A + G LK GD++L +N  +
Sbjct: 8   HSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKG-LKAGDEILEINNRA 66

Query: 87  VEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
            +  +     + L   Q S+ L+VR  P++
Sbjct: 67  ADALNSSMLKDFLS--QPSLGLLVRTYPEL 94

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 76.2 bits (186), Expect = 2e-17
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 11  SATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRH 70
               +  V     S       +++ P     LGF+V  G        I  ++ GG+A+R 
Sbjct: 279 GLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNG-------IICSLMRGGIAER- 330

Query: 71  GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
           GG++ G +++ +NG SV    H K V+ L  +   + +  
Sbjct: 331 GGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKT 370

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 73.1 bits (178), Expect = 3e-16
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 36  PKTDEGLGFNVMGG--KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG 93
               E LG  V+          + ++ ++ GG A R G L  GDQ++S+NG S+ G    
Sbjct: 212 KHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLA 271

Query: 94  KAVELLKQAQRSVKLVVRYTP 114
               ++K  +   ++ +    
Sbjct: 272 TCQGIIKGLKNQTQVKLNIVS 292

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 75.7 bits (185), Expect = 3e-17
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
           ++V+  K  + +G  + GG +    I+++ ++    A + G L+ GDQ+L VN V     
Sbjct: 3   KLVKFRKG-DSVGLRLAGGND--VGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI 58

Query: 91  DHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMR 123
              +AV  L    +  ++ +    K      + 
Sbjct: 59  IREEAVLFLLDLPKGEEVTILAQKKKDVYRRIV 91

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 69.2 bits (168), Expect = 1e-15
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 10/105 (9%)

Query: 40  EGLGFNVMGGKEQ--------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
             LGF++ GG           +  I+++R+ P G A     L+ GD+++  NG S    +
Sbjct: 2   PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIE 59

Query: 92  HGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPP 136
           HG+AV LLK  Q +V+L++        + E+R   ++        
Sbjct: 60  HGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVS 104

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 65.6 bits (160), Expect = 4e-15
 Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 23  ASEGHAHPRV--VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLL 80
           A+       +  + L K  +G GF +       +   +  I+    +    GL++GD + 
Sbjct: 4   ATLYKKAGLLVTIPLIKGPKGFGFAIADS---PTGQKVKMILD---SQWCQGLQKGDIIK 57

Query: 81  SVNGVSVEGEDHGKAVELLKQAQR--SVKLVVR 111
            +   +V+   H + VE+LKQ      V L++ 
Sbjct: 58  EIYHQNVQNLTHLQVVEVLKQFPVGADVPLLIL 90

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 118

 Score = 52.1 bits (124), Expect = 8e-10
 Identities = 16/89 (17%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 31  RVVELPKTDEG-LGFNVM---GGKEQNSPIYISRIIPGGVA-DRHGGLKRGDQLLSVNGV 85
            ++ +P T E   GF+V          + + +  +    ++ +    +  GD++L +NG 
Sbjct: 17  TLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGT 76

Query: 86  SVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
            V      +  + +KQ  ++++L++ + P
Sbjct: 77  PVRTLRVEEVEDAIKQTSQTLQLLIEHDP 105

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 403

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 34  ELPKTDEGLGFNVMGGKEQNSP--IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
           + P    G  + +    + ++     IS ++PG  A+   GL+RG  ++ +NG  +  + 
Sbjct: 68  DEPIPSYGFDYTLYKVLDNDTAYNALISYVVPGSPAEE-AGLQRGHWIMMMNGDYITKKV 126

Query: 92  HGKAVE 97
             + ++
Sbjct: 127 ESELLQ 132

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A Length = 388

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 41  GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
           G+G  +         + +    PGG A++  G + GD +++V+G +V+G       +LL+
Sbjct: 86  GVGLEITYDGGSGKDVVVLTPAPGGPAEK-AGARAGDVIVTVDGTAVKGMSLYDVSDLLQ 144

Query: 101 -QAQRSVKLVVR 111
            +A   V++V+ 
Sbjct: 145 GEADSQVEVVLH 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.77
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.75
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.75
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.75
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.74
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.74
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.74
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.74
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.73
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.72
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.72
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.72
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.72
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.71
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.71
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.71
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.71
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.71
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.7
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.7
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.7
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.7
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.7
2ego_A	96	General receptor for phosphoinositides 1- associat	99.7
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.7
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.7
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.7
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.7
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.7
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.7
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.7
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.69
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.69
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.69
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.69
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.69
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.69
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.69
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.69
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.69
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.69
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.68
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.68
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.68
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.68
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.68
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.68
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.68
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.68
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.68
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.68
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.68
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.68
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.67
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.67
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.67
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.67
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.67
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.67
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.66
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.66
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.66
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.66
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.66
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.66
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.66
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.66
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.65
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.65
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.65
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.65
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.65
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.65
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.65
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.65
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.64
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.64
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.64
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.64
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.64
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.64
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.64
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.64
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.64
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.63
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.63
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.63
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.63
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.63
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.63
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.62
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.62
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.62
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.62
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.62
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.62
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.62
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.62
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.62
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.61
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.61
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.61
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.61
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.61
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.6
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.6
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.6
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.6
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.6
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.6
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.6
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.59
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.59
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.59
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.58
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.58
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.58
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.58
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.58
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.58
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.57
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.57
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.57
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.57
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.57
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.56
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.56
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.56
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.56
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.56
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.56
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.55
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.55
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.54
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.54
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.53
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.53
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.53
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.52
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.51
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.5
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.5
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.5
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.49
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	99.24
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.49
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.49
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.46
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.45
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.45
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.45
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	99.44
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.44
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.43
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.43
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.42
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.41
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.4
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.4
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.37
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.35
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.34
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.34
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.32
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.31
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.25
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.18
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.17
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.89
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.85
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.8
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.79
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.75
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.74
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.74
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.72
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.71
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.71
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.7
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.68
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.59
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.58
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.57
3k50_A	403	Putative S41 protease; structural genomics, joint	98.56
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.56
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.52
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.5
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.48
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.44
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.43
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.41
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.36
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.36
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.34
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.33
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.13
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.96
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.9
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.89
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.6
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.7

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.3e-17  Score=101.68  Aligned_cols=89  Identities=84%  Similarity=1.226  Sum_probs=80.0

Q ss_pred             CCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        27 ~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      ...+++|+|.+...+|||++.++.+...+++|..|.+++||+++|+|+.||+|++|||..+.++++.++..+++..+..+
T Consensus         3 ~~~~r~v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   82 (93)
T 2dkr_A            3 SGSSGVVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSV   82 (93)
T ss_dssp             SSCSCEEEEECCTTCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEE
T ss_pred             CCCCEEEEEEeCCCCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence            35788999999999999999987665678999999999999999559999999999999999999999999999888889


Q ss_pred             EEEEEECCc
Q psy12579        107 KLVVRYTPK  115 (138)
Q Consensus       107 ~l~v~r~~~  115 (138)
                      .|++.|++.
T Consensus        83 ~l~v~r~~~   91 (93)
T 2dkr_A           83 KLVVRSGPS   91 (93)
T ss_dssp             EEEECCCCS
T ss_pred             EEEEEeCCC
Confidence            999988764

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.75  E-value=3e-17  Score=102.06  Aligned_cols=96  Identities=39%  Similarity=0.706  Sum_probs=84.4

Q ss_pred             cCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         24 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      .+....++.|++.+++.+|||++.++.+ ..+++|..|.++|||+++ | |+.||+|++|||.++.++++.++...++..
T Consensus         6 ~~~~~~~~~v~l~k~~~glG~~~~~~~~-~~gv~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   83 (104)
T 3i4w_A            6 EDIPREPRRIVIHRGSTGLGFNIVGGEX-GEGIFISFILAGGPADLS-GELRKGDQILSVNGVDLRNASHEQAAIALKNA   83 (104)
T ss_dssp             CCCCSSCEEEEEECBTTBTSEEEEECC--CCCEEEEEECTTSHHHHH-CCCCTTEEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             CCCCCccEEEEEEeCCCccCEEEECCCC-CCCEEEEEECCCChHHhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            3455788999999998999999998754 348999999999999999 7 999999999999999999999999999999


Q ss_pred             CCeEEEEEEECCchHHHHH
Q psy12579        103 QRSVKLVVRYTPKVLEEME  121 (138)
Q Consensus       103 ~~~v~l~v~r~~~~~~~~~  121 (138)
                      +..+.|++.|++..+..++
T Consensus        84 ~~~v~l~v~r~~~~~~~~~  102 (104)
T 3i4w_A           84 GQTVTIIAQYKPEEYSRFE  102 (104)
T ss_dssp             CSEEEEEEEECHHHHHHHH
T ss_pred             CCeEEEEEEECcchhhhhc
Confidence            9999999999987666554

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.75  E-value=8.6e-18  Score=108.73  Aligned_cols=91  Identities=30%  Similarity=0.535  Sum_probs=79.8

Q ss_pred             cCCCCCcEEEEEecCCCCcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579         24 SEGHAHPRVVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK  100 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~  100 (138)
                      .+.....+.|++.++..+|||+|.++.+   ...+++|..|.++++|+++|+|+.||+|++|||..+.+++|.++..+++
T Consensus        24 ~~~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~  103 (130)
T 1i16_A           24 STAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIK  103 (130)
T ss_dssp             CSSSEEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHH
T ss_pred             CCCCCcEEEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3444677889999988999999998876   3567999999999999999999999999999999999999999999999


Q ss_pred             hCCC-eEEEEEEECC
Q psy12579        101 QAQR-SVKLVVRYTP  114 (138)
Q Consensus       101 ~~~~-~v~l~v~r~~  114 (138)
                      ..+. .+.|+|+|..
T Consensus       104 ~~~~~~v~l~v~r~~  118 (130)
T 1i16_A          104 ALPDGPVTIVIRRKS  118 (130)
T ss_dssp             TSCSSEEEEEEEEES
T ss_pred             hCCCceEEEEEEeCC
Confidence            9854 5899998864

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.75  E-value=6.2e-17  Score=96.56  Aligned_cols=78  Identities=23%  Similarity=0.413  Sum_probs=70.9

Q ss_pred             CCCcEEEEEecCCC-CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         27 HAHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        27 ~~~~~~v~l~~~~~-~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      +..+|+|+|+++.. +|||++.++       +|..+.+++||+++ ||+.||+|++|||.++.+++|+++.++|+.++..
T Consensus         2 ~~~~r~v~l~k~~~g~~Gf~i~~g-------~I~~v~~gspA~~a-Gl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~   73 (82)
T 1r6j_A            2 AMDPRTITMHKDSTGHVGFIFKNG-------KITSIVKDSSAARN-GLLTEHNICEINGQNVIGLKDSQIADILSTSGTV   73 (82)
T ss_dssp             TTCCEEEEEECCTTSCCCEEEETT-------EEEEECTTSHHHHH-TCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             CCceEEEEEEECCCCCeEEEEECC-------EEEEecCCCHHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCE
Confidence            45789999999874 699999863       47899999999999 8999999999999999999999999999999999


Q ss_pred             EEEEEEE
Q psy12579        106 VKLVVRY  112 (138)
Q Consensus       106 v~l~v~r  112 (138)
                      +.|++..
T Consensus        74 V~L~v~p   80 (82)
T 1r6j_A           74 VTITIMP   80 (82)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999865

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.74  E-value=1.2e-17  Score=106.71  Aligned_cols=94  Identities=33%  Similarity=0.507  Sum_probs=75.9

Q ss_pred             hccCCCCCcEEEEEecCC-CCcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHH
Q psy12579         22 AASEGHAHPRVVELPKTD-EGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVE   97 (138)
Q Consensus        22 ~~~~~~~~~~~v~l~~~~-~~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~   97 (138)
                      ...+....+++|.|.++. .+|||++.++.+   ...+++|..|.++|||+++++|+.||+|++|||.++.++++.++..
T Consensus        17 ~~~s~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~   96 (120)
T 2iwo_A           17 NLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVN   96 (120)
T ss_dssp             --------CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHH
T ss_pred             cCCCCCCCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            344556788999999987 599999998754   2346999999999999999899999999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEECCc
Q psy12579         98 LLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        98 ~l~~~~~~v~l~v~r~~~  115 (138)
                      +++..+..+.|+|.|+..
T Consensus        97 ~l~~~~~~v~l~v~r~g~  114 (120)
T 2iwo_A           97 LLKNASGSIEMQVVAGGD  114 (120)
T ss_dssp             HHHHCCSEEEEEEECCTT
T ss_pred             HHHcCCCeEEEEEEECCc
Confidence            999999999999998764

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.74  E-value=9.8e-17  Score=100.33  Aligned_cols=90  Identities=29%  Similarity=0.549  Sum_probs=80.0

Q ss_pred             CCCCcEEEEEecCCCCcCeEEeccCCC--------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHH
Q psy12579         26 GHAHPRVVELPKTDEGLGFNVMGGKEQ--------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVE   97 (138)
Q Consensus        26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~--------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~   97 (138)
                      ...++++|.|.++..+|||++.++.+.        ..+++|..|.+++||+++++|+.||+|++||+.++.++++.++..
T Consensus         5 ~~~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~   84 (107)
T 1uhp_A            5 SSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVE   84 (107)
T ss_dssp             CSSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHH
T ss_pred             cCcEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            346788899999989999999986532        457999999999999999899999999999999999999999999


Q ss_pred             HHHhCCCeEEEEEEECCc
Q psy12579         98 LLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        98 ~l~~~~~~v~l~v~r~~~  115 (138)
                      +++..+..+.|++.|...
T Consensus        85 ~~~~~~~~v~l~v~R~~~  102 (107)
T 1uhp_A           85 AFKTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             HHHHCCSSEEEEEEECCS
T ss_pred             HHHcCCCcEEEEEEeCCC
Confidence            999998999999988643

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.74  E-value=6.2e-17  Score=98.17  Aligned_cols=86  Identities=40%  Similarity=0.620  Sum_probs=77.5

Q ss_pred             CCcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         28 AHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        28 ~~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      ..+++|++.+. ..+|||++.++.+...+++|..|.++|||+++++|++||+|++|||.++.++++.++..+++..+..+
T Consensus         3 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v   82 (90)
T 1qav_A            3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV   82 (90)
T ss_dssp             SSCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             CccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            57899999995 58999999987665668999999999999998899999999999999999999999999999888899


Q ss_pred             EEEEEEC
Q psy12579        107 KLVVRYT  113 (138)
Q Consensus       107 ~l~v~r~  113 (138)
                      .|++.|.
T Consensus        83 ~l~v~r~   89 (90)
T 1qav_A           83 VLEVKYM   89 (90)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9998773

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.74  E-value=7.3e-17  Score=97.87  Aligned_cols=87  Identities=34%  Similarity=0.559  Sum_probs=78.4

Q ss_pred             CCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        27 ~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      .+.+|+|.+.++..+|||++.++.+ ..+++|..|.++|||+.+ ||+.||+|++|||.++.++++.++..+++..+..+
T Consensus         2 ~~~~r~v~l~k~~~g~G~~~~~~~~-~~gv~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v   79 (90)
T 2he4_A            2 MLRPRLCHLRKGPQGYGFNLHSDKS-RPGQYIRSVDPGSPAARS-GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEA   79 (90)
T ss_dssp             TTCCEEEEEECBTTBCCEEEEECSS-SSSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEE
T ss_pred             CCCcEEEEEEECCCCccEEEEccCC-CCCEEEEEECCCChHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcE
Confidence            4578999999999999999998654 457999999999999999 89999999999999999999999999999888899


Q ss_pred             EEEEEECCc
Q psy12579        107 KLVVRYTPK  115 (138)
Q Consensus       107 ~l~v~r~~~  115 (138)
                      .|++.|...
T Consensus        80 ~l~v~r~~~   88 (90)
T 2he4_A           80 RLLVVGPST   88 (90)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEccCC
Confidence            999988753

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.73  E-value=8.3e-17  Score=98.07  Aligned_cols=86  Identities=24%  Similarity=0.355  Sum_probs=75.7

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~  105 (138)
                      .+++.|++.|.+++|||+|.++.  ...+||..+.+||+|++++.|++||.|++|||.++.+++|.++.++|++.  +..
T Consensus         4 g~~k~V~l~K~~~~LG~tI~~~g--~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~   81 (95)
T 3gge_A            4 GIEKEVNVYKSEDSLGLTITDNG--VGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEEL   81 (95)
T ss_dssp             EEEEEEEEECCSSCCCEEEECSS--SSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCE
T ss_pred             CeEEEEEEEECCCCceEEEEcCC--CCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCE
Confidence            46788999999999999998642  34589999999999999999999999999999999999999999999996  457


Q ss_pred             EEEEEEECCc
Q psy12579        106 VKLVVRYTPK  115 (138)
Q Consensus       106 v~l~v~r~~~  115 (138)
                      ++|.+.++-.
T Consensus        82 ~~L~lv~p~~   91 (95)
T 3gge_A           82 FTMKLIEPKK   91 (95)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEECccc
Confidence            8888877643

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.72  E-value=1.1e-16  Score=98.97  Aligned_cols=87  Identities=39%  Similarity=0.638  Sum_probs=78.0

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      ..++.|+|.++..+|||++.++.+.     ..+++|..|.++++|+++ | |+.||+|++|||..+.++++.++..+++.
T Consensus         6 ~~~~~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   84 (101)
T 2jik_A            6 VTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALD-GRLQEGDKILSVNGQDLKNLLHQDAVDLFRN   84 (101)
T ss_dssp             EEEEEEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECSSCCHHHHHHHHHT
T ss_pred             CccEEEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            4678899999889999999987653     358999999999999999 6 99999999999999999999999999988


Q ss_pred             CCCeEEEEEEECCc
Q psy12579        102 AQRSVKLVVRYTPK  115 (138)
Q Consensus       102 ~~~~v~l~v~r~~~  115 (138)
                      .+..+.|+|.|++.
T Consensus        85 ~g~~v~l~v~R~~~   98 (101)
T 2jik_A           85 AGYAVSLRVQHRLE   98 (101)
T ss_dssp             CCSEEEEEEEEESC
T ss_pred             CCCeEEEEEEeCCC
Confidence            88899999988753

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.72  E-value=6.7e-17  Score=97.97  Aligned_cols=84  Identities=43%  Similarity=0.752  Sum_probs=75.6

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--Ce
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--RS  105 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~--~~  105 (138)
                      ++++|.+.++..+|||++.++.+...+++|..|.++|||+++ | |+.||.|++|||.++.+.++.++..+++..+  ..
T Consensus         2 ~~~~v~l~~~~~g~G~~~~~g~~~~~~~~V~~V~~~spA~~a-G~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   80 (90)
T 2q9v_A            2 MEQDIFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTD-GRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGH   80 (90)
T ss_dssp             EEEEEEEECBTTBCCEEEEECSSTTSCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred             CcEEEEEEECCCccCEEEEccccCCCCEEEEEECCCChHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            568899999999999999987665667999999999999999 6 9999999999999999999999999998864  48


Q ss_pred             EEEEEEEC
Q psy12579        106 VKLVVRYT  113 (138)
Q Consensus       106 v~l~v~r~  113 (138)
                      +.|+|.|.
T Consensus        81 v~l~v~R~   88 (90)
T 2q9v_A           81 VNLTVRQT   88 (90)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            99999875

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.72  E-value=1.1e-16  Score=99.46  Aligned_cols=90  Identities=46%  Similarity=0.709  Sum_probs=77.7

Q ss_pred             CCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         26 GHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        26 ~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      .+..++.|.+.+.. .+|||++.++.+...+++|..|.++|+|+++++|+.||+|++|||.++.++++.++..+++..++
T Consensus         6 ~~~~~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~   85 (103)
T 2dc2_A            6 GVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG   85 (103)
T ss_dssp             ---CEEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCS
T ss_pred             CCCCcEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            44567888898765 78999999877655679999999999999966999999999999999999999999999999989


Q ss_pred             eEEEEEEECCc
Q psy12579        105 SVKLVVRYTPK  115 (138)
Q Consensus       105 ~v~l~v~r~~~  115 (138)
                      .+.|++.+...
T Consensus        86 ~v~l~v~~~~~   96 (103)
T 2dc2_A           86 EIEFEVVYVAL   96 (103)
T ss_dssp             EEEEEEEECC-
T ss_pred             cEEEEEEecCC
Confidence            99999988754

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.72  E-value=5.2e-17  Score=100.96  Aligned_cols=91  Identities=35%  Similarity=0.634  Sum_probs=80.0

Q ss_pred             cCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-
Q psy12579         24 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-  102 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-  102 (138)
                      +....+.+.+.|.+...+|||++.++.+...+++|..|.+++||+++|.|+.||+|++|||.++.++++.++..+++.. 
T Consensus         4 ~~~~~~~~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   83 (103)
T 1uep_A            4 GSSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAA   83 (103)
T ss_dssp             CSSSEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEEEeCCCccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            3445677889999988999999998776667899999999999999933999999999999999999999999999886 


Q ss_pred             -CCeEEEEEEECC
Q psy12579        103 -QRSVKLVVRYTP  114 (138)
Q Consensus       103 -~~~v~l~v~r~~  114 (138)
                       +..+.|+|.|+.
T Consensus        84 ~g~~v~l~v~R~~   96 (103)
T 1uep_A           84 RNGQVNLTVRRKV   96 (103)
T ss_dssp             HHTEEEEEEEEEC
T ss_pred             CCCcEEEEEEeCC
Confidence             789999998874

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.71  E-value=1.8e-16  Score=97.18  Aligned_cols=87  Identities=30%  Similarity=0.478  Sum_probs=77.1

Q ss_pred             CCcEEEEEecCCCCcCeEEeccC--CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGK--EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~--~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      ..+|+|.+.++..+|||++.+..  +...+++|..|.++|||+.+ ||+.||.|++|||.++.++++.++..+++..+..
T Consensus         2 ~~~r~v~l~k~~~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   80 (96)
T 2v90_A            2 MKPRCLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKA-GMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSC   80 (96)
T ss_dssp             CCCEEEEEECBTTBSCEEEEEEECTTSCEEEEEEEECTTSHHHHT-TCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CCCEEEEEEeCCCcccEEEEeccCCCCCCCeEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            36899999999999999998732  23347999999999999999 8999999999999999999999999999888889


Q ss_pred             EEEEEEECCc
Q psy12579        106 VKLVVRYTPK  115 (138)
Q Consensus       106 v~l~v~r~~~  115 (138)
                      +.|++.|+..
T Consensus        81 v~l~v~r~~~   90 (96)
T 2v90_A           81 VSLTVVDPEA   90 (96)
T ss_dssp             EEEEEECCCT
T ss_pred             EEEEEECCCC
Confidence            9999998764

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.71  E-value=3.5e-16  Score=97.35  Aligned_cols=89  Identities=43%  Similarity=0.692  Sum_probs=79.4

Q ss_pred             CCCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         25 EGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      .....+++|.|.+.. .+|||++.++.+...+++|..|.+++||+++ ||+.||+|++|||..+.++++.++..+++. +
T Consensus        11 ~~~~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~   88 (104)
T 1wi2_A           11 LTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQDIEHSKAVEILKT-A   88 (104)
T ss_dssp             CCSSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHH-TCCTTCEEEEETTEECSSCCHHHHHHHHHH-S
T ss_pred             cCCCCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhC-C
Confidence            334678999999977 7899999987665678999999999999999 899999999999999999999999999988 7


Q ss_pred             CeEEEEEEECCc
Q psy12579        104 RSVKLVVRYTPK  115 (138)
Q Consensus       104 ~~v~l~v~r~~~  115 (138)
                      ..+.|+|+|.+.
T Consensus        89 ~~v~l~v~r~~~  100 (104)
T 1wi2_A           89 REISMRVRFFSG  100 (104)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CEEEEEEEECCC
Confidence            889999998764

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.71  E-value=3e-16  Score=95.35  Aligned_cols=85  Identities=24%  Similarity=0.422  Sum_probs=74.1

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      .+++|++.++..+|||.+.+    ..+++|..|.++|||+++ ||+.||.|++|||..+.++++.++..+++..+..+.|
T Consensus         3 ~~r~v~l~~~~~g~G~~l~~----~~~~~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l   77 (91)
T 2f5y_A            3 RYRQITIPRGKDGFGFTICC----DSPVRVQAVDSGGPAERA-GLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIIL   77 (91)
T ss_dssp             EEEEEEEECBTTBTSEEEEC----SSSCEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred             ceEEEEEEeCCCCccEEEec----CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            57889999999999999986    346999999999999999 8999999999999999999999999999888888999


Q ss_pred             EEEECCchHH
Q psy12579        109 VVRYTPKVLE  118 (138)
Q Consensus       109 ~v~r~~~~~~  118 (138)
                      ++.|..+...
T Consensus        78 ~v~R~~~~~~   87 (91)
T 2f5y_A           78 LVWRMVPQVK   87 (91)
T ss_dssp             EEEECC----
T ss_pred             EEEeCCCCCC
Confidence            9999865443

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.71  E-value=3.3e-16  Score=97.06  Aligned_cols=87  Identities=40%  Similarity=0.617  Sum_probs=77.7

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      .+.++|++.++..+|||++.++.+.     ..+++|..|.++|||+++ | |+.||.|++|||.++.++++.++..+++.
T Consensus         3 ~~~~~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   81 (102)
T 2i1n_A            3 FKYEEIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMD-GRLGVNDCVLRVNEVDVSEVVHSRAVEALKE   81 (102)
T ss_dssp             EEEEEEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             ceEEEEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            3567899999889999999987542     458999999999999999 6 99999999999999999999999999999


Q ss_pred             CCCeEEEEEEECCc
Q psy12579        102 AQRSVKLVVRYTPK  115 (138)
Q Consensus       102 ~~~~v~l~v~r~~~  115 (138)
                      .+..+.|++.|++.
T Consensus        82 ~g~~v~l~v~R~~~   95 (102)
T 2i1n_A           82 AGPVVRLVVRRRQP   95 (102)
T ss_dssp             SCSEEEEEEEEECC
T ss_pred             CCCeEEEEEEeCCC
Confidence            88999999998764

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.71  E-value=1e-16  Score=101.90  Aligned_cols=89  Identities=37%  Similarity=0.693  Sum_probs=78.6

Q ss_pred             CCCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         27 HAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        27 ~~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      .+.+++|+|.++..+|||++.++.+.   ..+++|..|.++|||+++|+|+.||+|++|||.++.++++.++..+++..+
T Consensus        23 ~~~~~~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  102 (117)
T 2fne_A           23 MPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK  102 (117)
T ss_dssp             CCEEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CCccEEEEEEeCCCcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            46778899999999999999987532   347999999999999999449999999999999999999999999999888


Q ss_pred             CeEEEEEEECCc
Q psy12579        104 RSVKLVVRYTPK  115 (138)
Q Consensus       104 ~~v~l~v~r~~~  115 (138)
                      ..+.|+|.|.+.
T Consensus       103 ~~v~l~v~R~g~  114 (117)
T 2fne_A          103 GTVTLMVLSSDE  114 (117)
T ss_dssp             SSEEEEEEECSC
T ss_pred             CeEEEEEEeCCc
Confidence            889999998764

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.70  E-value=4.8e-16  Score=94.34  Aligned_cols=84  Identities=37%  Similarity=0.573  Sum_probs=73.3

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK  107 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~  107 (138)
                      .++++|++.+++.+|||++.++.+ ..+++|..|.++|||+.+ ||+.||.|++|||.++.++++.++..+++..++.+.
T Consensus         2 ~~~r~v~l~r~~~g~G~~~~~~~~-~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   79 (91)
T 1g9o_A            2 MLPRLCCLEKGPNGYGFHLHGEKG-KLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVR   79 (91)
T ss_dssp             CCCEEEEEECBTTBCCEEEEECTT-CSSEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             CccEEEEEEeCCCcccEEEEecCC-CCCEEEEEECCCCHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence            368999999999999999988653 358999999999999999 899999999999999999999999999998877766


Q ss_pred             EEEEEC
Q psy12579        108 LVVRYT  113 (138)
Q Consensus       108 l~v~r~  113 (138)
                      +.+.+.
T Consensus        80 ~~~~~r   85 (91)
T 1g9o_A           80 LLVVDP   85 (91)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            655443

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.70  E-value=2.9e-16  Score=98.98  Aligned_cols=92  Identities=32%  Similarity=0.583  Sum_probs=78.3

Q ss_pred             hccCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579         22 AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLK  100 (138)
Q Consensus        22 ~~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~  100 (138)
                      .......+.++|++.++..+|||++.++.+...+++|..|.++|+|+++ | |+.||+|++|||..+.++++.++..+++
T Consensus        17 t~~~~~~~~~~v~l~~~~~glG~~l~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~   95 (112)
T 2r4h_A           17 NLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERS-GKMRIGDEILEINGETTKNMKHSRAIELIK   95 (112)
T ss_dssp             ------CCEEEEEEECBTTBTSEEEEECGGGTCCEEEEEECTTSHHHHT-TCCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ccccCCCceEEEEEEcCCCccCEEEeccccCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3344456788999999888999999987655678999999999999999 6 9999999999999999999999999998


Q ss_pred             hCCCeEEEEEEECC
Q psy12579        101 QAQRSVKLVVRYTP  114 (138)
Q Consensus       101 ~~~~~v~l~v~r~~  114 (138)
                      ..+..+.|+|.|..
T Consensus        96 ~~g~~v~l~v~R~~  109 (112)
T 2r4h_A           96 NGGRRVRLFLKRGE  109 (112)
T ss_dssp             TTTTEEEEEEECCE
T ss_pred             cCCCeEEEEEEeCC
Confidence            88889999998864

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.70  E-value=5.7e-16  Score=95.17  Aligned_cols=87  Identities=33%  Similarity=0.550  Sum_probs=77.0

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      ...++|++.+...+|||++.++.+...+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+++..+..+
T Consensus         4 ~~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v   82 (97)
T 1n7e_A            4 AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERT-GAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETV   82 (97)
T ss_dssp             CCEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHH-TCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             ceEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            4567888988878899999987654568999999999999999 7 9999999999999999999999999998778899


Q ss_pred             EEEEEECCc
Q psy12579        107 KLVVRYTPK  115 (138)
Q Consensus       107 ~l~v~r~~~  115 (138)
                      .|++.|...
T Consensus        83 ~l~v~R~~~   91 (97)
T 1n7e_A           83 TLKIKKQTD   91 (97)
T ss_dssp             EEEEECCCC
T ss_pred             EEEEEeCCC
Confidence            999988753

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.70  E-value=5.5e-16  Score=94.59  Aligned_cols=85  Identities=39%  Similarity=0.599  Sum_probs=75.5

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      +.++|+|.+++.+|||++.++.+.     ..+++|..|.+++||+++ | |+.||.|++|||.++.++++.++..+++..
T Consensus         3 ~~~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (94)
T 2fe5_A            3 TIMEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKD-GRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT   81 (94)
T ss_dssp             CEEEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred             EEEEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            567899999999999999986542     347999999999999999 6 999999999999999999999999999888


Q ss_pred             CCeEEEEEEECC
Q psy12579        103 QRSVKLVVRYTP  114 (138)
Q Consensus       103 ~~~v~l~v~r~~  114 (138)
                      +..+.|++.|+.
T Consensus        82 ~~~v~l~v~R~g   93 (94)
T 2fe5_A           82 SDMVYLKVAKPG   93 (94)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCeEEEEEEcCC
Confidence            889999998764

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.70  E-value=4e-16  Score=95.73  Aligned_cols=86  Identities=28%  Similarity=0.501  Sum_probs=74.2

Q ss_pred             CCCcEEEEEecCC-CCcCeEEec-------cCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579         27 HAHPRVVELPKTD-EGLGFNVMG-------GKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL   98 (138)
Q Consensus        27 ~~~~~~v~l~~~~-~~~G~~l~~-------~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~   98 (138)
                      ++.+++|.+.++. .+|||++.+       +.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+
T Consensus         2 ~~~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~   80 (96)
T 2ego_A            2 SQQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLA-GLTPGDTIASVNGLNVEGIRHREIVDI   80 (96)
T ss_dssp             CCCEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            4578999999987 689999986       3333457899999999999999 899999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEEC
Q psy12579         99 LKQAQRSVKLVVRYT  113 (138)
Q Consensus        99 l~~~~~~v~l~v~r~  113 (138)
                      ++..+..+.|++.+.
T Consensus        81 l~~~~~~v~l~v~~~   95 (96)
T 2ego_A           81 IKASGNVLRLETLYG   95 (96)
T ss_dssp             HHHTTTEEEEEEECC
T ss_pred             HHhCCCeEEEEEEEC
Confidence            998888899988764

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.70  E-value=2.8e-16  Score=97.92  Aligned_cols=89  Identities=39%  Similarity=0.701  Sum_probs=78.7

Q ss_pred             CCCCcEEEEEecCCCCcCeEEeccCCC------CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579         26 GHAHPRVVELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVEL   98 (138)
Q Consensus        26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~------~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~   98 (138)
                      ...+..++.|.+...+|||++.++.+.      ..+++|..|.+++||+++ | |+.||+|++||+.++.++++.++..+
T Consensus         4 ~~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~   82 (105)
T 1wha_A            4 GSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRA-GTLQVGDRVLSINGVDVTEARHDHAVSL   82 (105)
T ss_dssp             CCCEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHH-SSCCTTCEEEEESSCBCTTCCHHHHHHH
T ss_pred             CCCeeEEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            345677899999889999999987642      457999999999999999 6 99999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEECCc
Q psy12579         99 LKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        99 l~~~~~~v~l~v~r~~~  115 (138)
                      ++..+..+.|+|.|++.
T Consensus        83 l~~~g~~v~l~v~R~~~   99 (105)
T 1wha_A           83 LTAASPTIALLLEREAG   99 (105)
T ss_dssp             HTSCCSCEEEEEEECCC
T ss_pred             HHcCCCeEEEEEEECCC
Confidence            98888899999998753

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.70  E-value=3e-16  Score=94.73  Aligned_cols=84  Identities=29%  Similarity=0.474  Sum_probs=74.4

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      ...+|++ +++.+|||++.++.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++..+..+.|
T Consensus         3 ~~~~v~l-~~~~~~G~~l~~g~~~~~~~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   80 (88)
T 2uzc_A            3 SNYSVSL-VGPAPWGFRLQGGKDFNMPLTISSLKDGGKAAQA-NVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNM   80 (88)
T ss_dssp             CEEEEEE-ESSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred             cEEEEEE-cCCCcccEEEECcCCCCCCeEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence            3566777 5668999999987766667999999999999999 8999999999999999999999999999888889999


Q ss_pred             EEEECC
Q psy12579        109 VVRYTP  114 (138)
Q Consensus       109 ~v~r~~  114 (138)
                      ++.|+.
T Consensus        81 ~v~R~g   86 (88)
T 2uzc_A           81 TLQRES   86 (88)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            998875

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.70  E-value=2e-16  Score=99.11  Aligned_cols=88  Identities=36%  Similarity=0.574  Sum_probs=77.5

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCC----CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKE----QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-  102 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~----~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-  102 (138)
                      .++++|.|.+.+.+|||++.++.+    ...+++|..|.+++||+++|.|+.||+|++|||.++.++++.++..+++.. 
T Consensus        14 ~~~~~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~   93 (108)
T 2d92_A           14 PEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVP   93 (108)
T ss_dssp             SSCEEEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSC
T ss_pred             CceEEEEEEECCCccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            467899999999999999998654    245799999999999999944999999999999999999999999999986 


Q ss_pred             CCeEEEEEEECCc
Q psy12579        103 QRSVKLVVRYTPK  115 (138)
Q Consensus       103 ~~~v~l~v~r~~~  115 (138)
                      +..+.|+|.|.+.
T Consensus        94 ~~~v~l~v~R~~~  106 (108)
T 2d92_A           94 PGLVHLGICSGPS  106 (108)
T ss_dssp             SEEEEEEEECCCC
T ss_pred             CCeEEEEEEcCCC
Confidence            5689999988753

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.70  E-value=5.1e-16  Score=100.61  Aligned_cols=94  Identities=33%  Similarity=0.495  Sum_probs=80.1

Q ss_pred             hccCCCCCcEEEEEecCC-CCcCeEEeccCCC------------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCC
Q psy12579         22 AASEGHAHPRVVELPKTD-EGLGFNVMGGKEQ------------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE   88 (138)
Q Consensus        22 ~~~~~~~~~~~v~l~~~~-~~~G~~l~~~~~~------------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~   88 (138)
                      ..+....++++|++.+.+ .+|||+|.++...            ..+++|..|.++|+|+++ ||+.||+|++|||..+.
T Consensus        20 ~~s~~~~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~a-GL~~GD~Il~Vng~~v~   98 (132)
T 3l4f_D           20 SGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRMGDFLIEVNGQNVV   98 (132)
T ss_dssp             CSCCCCCCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGG-TCCTTCEEEEESSSBCT
T ss_pred             CCCCcCCCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECC
Confidence            344445788999999854 7999999987642            126899999999999999 79999999999999999


Q ss_pred             CCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12579         89 GEDHGKAVELLKQAQRSVKLVVRYTPKV  116 (138)
Q Consensus        89 ~~~~~~~~~~l~~~~~~v~l~v~r~~~~  116 (138)
                      ++++.++..+++..+..+.|+|.+....
T Consensus        99 ~~~~~~~~~~l~~~g~~v~l~v~~~~~~  126 (132)
T 3l4f_D           99 KVGHRQVVNMIRQGGNTLMVKVVMVTRH  126 (132)
T ss_dssp             TSCHHHHHHHHHHTTTEEEEEEECCCC-
T ss_pred             CCCHHHHHHHHHcCCCEEEEEEEECCCC
Confidence            9999999999999999999999877543

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.70  E-value=4.8e-16  Score=96.86  Aligned_cols=88  Identities=39%  Similarity=0.607  Sum_probs=77.1

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      +.++|+|.+++.+|||++.++.+.     ..+++|..|.++|+|+++|.|+.||.|++|||.++.+.++.++...++..+
T Consensus         3 ~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (105)
T 2awx_A            3 KIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTS   82 (105)
T ss_dssp             CEEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCC
T ss_pred             eEEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            567899999889999999987542     248999999999999999339999999999999999999999999998888


Q ss_pred             CeEEEEEEECCch
Q psy12579        104 RSVKLVVRYTPKV  116 (138)
Q Consensus       104 ~~v~l~v~r~~~~  116 (138)
                      ..+.|+|.|+...
T Consensus        83 ~~v~l~v~R~~~~   95 (105)
T 2awx_A           83 DFVYLKVAKPTSM   95 (105)
T ss_dssp             SEEEEEEECCCC-
T ss_pred             CeEEEEEEcCCCC
Confidence            8999999988643

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.70  E-value=4.4e-16  Score=93.78  Aligned_cols=84  Identities=48%  Similarity=0.747  Sum_probs=75.0

Q ss_pred             CcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579         29 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK  107 (138)
Q Consensus        29 ~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~  107 (138)
                      +++++++.+.. .+|||++.++.+...+++|..|.++|||+++++|+.||+|++|||.++.++++.++..+++..+..+.
T Consensus         2 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   81 (87)
T 4e34_A            2 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE   81 (87)
T ss_dssp             CCEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             CEEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            57889999875 58999999876656679999999999999944999999999999999999999999999999988999


Q ss_pred             EEEEE
Q psy12579        108 LVVRY  112 (138)
Q Consensus       108 l~v~r  112 (138)
                      |++.+
T Consensus        82 l~v~~   86 (87)
T 4e34_A           82 FEVVY   86 (87)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98875

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.70  E-value=1.9e-16  Score=100.66  Aligned_cols=91  Identities=36%  Similarity=0.554  Sum_probs=78.8

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL   99 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l   99 (138)
                      ....+.+.|++.++..+|||++.++.+.     ..+++|..|.++|+|+++|.|+.||+|++|||..+.++++.++..++
T Consensus        20 ~~~~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l   99 (117)
T 2byg_A           20 FQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAIL   99 (117)
T ss_dssp             CEEEEEEEEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHH
T ss_pred             cCCCceEEEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3345778899988889999999987542     35799999999999999933999999999999999999999999999


Q ss_pred             HhCCCeEEEEEEECCc
Q psy12579        100 KQAQRSVKLVVRYTPK  115 (138)
Q Consensus       100 ~~~~~~v~l~v~r~~~  115 (138)
                      +..+..+.|+|.|...
T Consensus       100 ~~~g~~v~l~v~R~~~  115 (117)
T 2byg_A          100 KNTSEVVYLKVGKPTT  115 (117)
T ss_dssp             HTCCSEEEEEEEEEEE
T ss_pred             HcCCCeEEEEEEeCCc
Confidence            9888999999998753

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.69  E-value=1e-15  Score=98.01  Aligned_cols=86  Identities=30%  Similarity=0.542  Sum_probs=77.6

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCC
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQR  104 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~  104 (138)
                      .+.++|++.++..+|||++.++.+...+++|..|.++++|+++ | |+.||+|++|||..+.++++.++..+++.  .+.
T Consensus        18 ~~~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~   96 (123)
T 1ueq_A           18 GTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQD-GKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQ   96 (123)
T ss_dssp             SEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHT-SCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTC
T ss_pred             CcEEEEEEEeCCCceeEEEecccCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            4667788999889999999987766678999999999999999 6 99999999999999999999999999988  468


Q ss_pred             eEEEEEEECC
Q psy12579        105 SVKLVVRYTP  114 (138)
Q Consensus       105 ~v~l~v~r~~  114 (138)
                      .+.|+|.|..
T Consensus        97 ~v~l~v~R~~  106 (123)
T 1ueq_A           97 SVNLVLCRGY  106 (123)
T ss_dssp             EEEEEEEESC
T ss_pred             eEEEEEEeCC
Confidence            9999999875

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.69  E-value=5.8e-16  Score=95.23  Aligned_cols=87  Identities=30%  Similarity=0.561  Sum_probs=77.5

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      .+.++|.+.++..+|||++.++.+.. .+++|..|.++|||+++ | |+.||.|++|||.++.++++.++..+++..+..
T Consensus         3 g~~~~v~l~~~~~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   81 (98)
T 2opg_A            3 GCETTIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKD-GRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQR   81 (98)
T ss_dssp             CEEEEEEEECBTTBTCEEEEECTTSTTCSEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSE
T ss_pred             CCEEEEEEEECCCcccEEEecCCCCCCCCEEEEEECCCChHHhC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            35678999999999999999876433 58999999999999999 6 999999999999999999999999999888889


Q ss_pred             EEEEEEECCc
Q psy12579        106 VKLVVRYTPK  115 (138)
Q Consensus       106 v~l~v~r~~~  115 (138)
                      +.|++.|++.
T Consensus        82 v~l~v~R~~~   91 (98)
T 2opg_A           82 VRLTLYRDEA   91 (98)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEcCCC
Confidence            9999998764

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.69  E-value=1.2e-15  Score=93.38  Aligned_cols=88  Identities=39%  Similarity=0.665  Sum_probs=77.9

Q ss_pred             CCCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         27 HAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        27 ~~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      ..++++|.|.+++.+|||++.++.+.   ..+++|..|.++|||+++ | |+.||.|++|||.++.++++.++..+++..
T Consensus         3 ~g~~~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~   81 (96)
T 1d5g_A            3 PGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESD-GRIHKGDRVLAVNGVSLEGATHKQAVETLRNT   81 (96)
T ss_dssp             TTCEEEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHT-TCCCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             CCCEEEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            34678899999999999999986542   358999999999999999 6 999999999999999999999999999888


Q ss_pred             CCeEEEEEEECCc
Q psy12579        103 QRSVKLVVRYTPK  115 (138)
Q Consensus       103 ~~~v~l~v~r~~~  115 (138)
                      +..+.|++.|++.
T Consensus        82 g~~v~l~v~R~~~   94 (96)
T 1d5g_A           82 GQVVHLLLEKGQS   94 (96)
T ss_dssp             CSEEEEEEECCSC
T ss_pred             CCeEEEEEEcCCC
Confidence            8899999988753

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.69  E-value=3.2e-16  Score=99.75  Aligned_cols=91  Identities=37%  Similarity=0.586  Sum_probs=78.8

Q ss_pred             cCCCCCcEEEEEecCC-CCcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12579         24 SEGHAHPRVVELPKTD-EGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL   99 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l   99 (138)
                      ...+..++.|.+.++. .+|||++.++.+   ...+++|..|.++|+|+++|.|+.||+|++|||.++.++++.++..++
T Consensus        19 ~~~~~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l   98 (118)
T 3b76_A           19 YFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALL   98 (118)
T ss_dssp             CCEEEEEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHH
T ss_pred             ccCCCCcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            3444677889998875 899999998753   345799999999999999933999999999999999999999999999


Q ss_pred             HhCCCeEEEEEEECC
Q psy12579        100 KQAQRSVKLVVRYTP  114 (138)
Q Consensus       100 ~~~~~~v~l~v~r~~  114 (138)
                      +..+..+.|+|.|..
T Consensus        99 ~~~~~~v~L~v~R~~  113 (118)
T 3b76_A           99 KRTSSSIVLKALEVK  113 (118)
T ss_dssp             HSCCSEEEEEEEEEE
T ss_pred             HcCCCeEEEEEEECC
Confidence            999999999998753

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.69  E-value=9.4e-17  Score=97.60  Aligned_cols=86  Identities=29%  Similarity=0.468  Sum_probs=74.3

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK  107 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~  107 (138)
                      +.+|+|.+.+++.+|||++.+... ..+++|..|.++|||+++ ||+.||.|++|||.++.++++.++..+++..+..+.
T Consensus         2 ~~pr~v~l~k~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~   79 (91)
T 2vsp_A            2 MKPKLCRLAKGENGYGFHLNAIRG-LPGSFIKEVQKGGPADLA-GLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVT   79 (91)
T ss_dssp             CCEEEEEEECBTTBTSCCCBCCTT-CSCCBC-CCCTTSHHHHT-TCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEE
T ss_pred             CCcEEEEEEeCCCcccEEEEeccC-CCCeEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            578999999998899999987543 357899999999999999 899999999999999998899999999988888999


Q ss_pred             EEEEECCc
Q psy12579        108 LVVRYTPK  115 (138)
Q Consensus       108 l~v~r~~~  115 (138)
                      |++.|...
T Consensus        80 l~v~r~~~   87 (91)
T 2vsp_A           80 LLVCGKKA   87 (91)
T ss_dssp             EEEEC---
T ss_pred             EEEEeCCc
Confidence            99988753

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.69  E-value=4.6e-16  Score=96.41  Aligned_cols=88  Identities=34%  Similarity=0.502  Sum_probs=78.5

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      +....+++|++.++..+|||++.+..+ ..+++|..|.++|||+.+ ||+.||+|++|||.++.++++.++..+++..+.
T Consensus         2 s~~~~~r~v~l~k~~~g~G~~l~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   79 (102)
T 2d90_A            2 SSGSSGRVVVIKKGSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGD   79 (102)
T ss_dssp             CSCSSSEEEEEECCSSSSSCEEEECSS-SSSEEEECCCTTSTTTTT-TCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTT
T ss_pred             CCCCCCEEEEEeeCCCCccEEEEeecC-CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            355688999999999999999997543 457999999999999999 899999999999999999989999999988889


Q ss_pred             eEEEEEEECC
Q psy12579        105 SVKLVVRYTP  114 (138)
Q Consensus       105 ~v~l~v~r~~  114 (138)
                      .+.|++.|..
T Consensus        80 ~v~l~v~r~~   89 (102)
T 2d90_A           80 QTTLLVLDKE   89 (102)
T ss_dssp             EEEEEECSTT
T ss_pred             EEEEEEEECC
Confidence            9999998764

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.69  E-value=8.8e-16  Score=92.05  Aligned_cols=81  Identities=31%  Similarity=0.525  Sum_probs=72.0

Q ss_pred             EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEE
Q psy12579         31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVK  107 (138)
Q Consensus        31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~  107 (138)
                      .++++.++..+|||++.++.+...+++|..|.+++||+++ | |+.||.|++|||.++.++++.++..+++..  +..+.
T Consensus         2 ~~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~   80 (85)
T 2i04_A            2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALD-GKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD   80 (85)
T ss_dssp             EEEEEECBTTBSSEEEEECCSTTBCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEE
T ss_pred             EEEEEEECCCCCCEEEEcccCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEE
Confidence            4688888889999999987665667999999999999999 6 999999999999999999999999999886  67888


Q ss_pred             EEEEE
Q psy12579        108 LVVRY  112 (138)
Q Consensus       108 l~v~r  112 (138)
                      |++.|
T Consensus        81 l~v~R   85 (85)
T 2i04_A           81 LELCR   85 (85)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88864

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.69  E-value=5.5e-16  Score=94.76  Aligned_cols=86  Identities=36%  Similarity=0.546  Sum_probs=75.9

Q ss_pred             CCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        27 ~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      +..++.|++.++..+|||.+.++.. ..+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..+++..+..+
T Consensus         3 p~~~r~v~l~~~~~~~G~~l~~~~~-~~~~~V~~v~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~   80 (95)
T 3r68_A            3 PHQPRVVVIKKGSNGYGFYLRAGPE-QKGQIIKDIEPGSPAEAA-GLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQT   80 (95)
T ss_dssp             CCCCEEEEEECBTTBCSCEEEEC---CCSEEEECCCTTSHHHHH-TCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             CCCcEEEEEecCCCcccEEEEecCC-CCCEEEEEECCCCHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            4678999999999999999987543 247999999999999999 89999999999999999999999999999988888


Q ss_pred             EEEEEECC
Q psy12579        107 KLVVRYTP  114 (138)
Q Consensus       107 ~l~v~r~~  114 (138)
                      .+++.+..
T Consensus        81 ~~~~~r~~   88 (95)
T 3r68_A           81 TLLVLDKE   88 (95)
T ss_dssp             EEEEEECC
T ss_pred             EEEEECCc
Confidence            88887764

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.69  E-value=4.8e-16  Score=98.65  Aligned_cols=92  Identities=29%  Similarity=0.531  Sum_probs=80.4

Q ss_pred             cCCCCCcEEEEEecCC-CCcCeEEeccCCC---------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHH
Q psy12579         24 SEGHAHPRVVELPKTD-EGLGFNVMGGKEQ---------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHG   93 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~~~---------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~   93 (138)
                      ...+..+++|.|.++. .+|||++.++.+.         ..+++|..|.+++||+++|.|+.||+|++|||.++.++++.
T Consensus        10 ~~~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~   89 (117)
T 2ehr_A           10 FSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHS   89 (117)
T ss_dssp             SSCBCCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHH
T ss_pred             cccCCCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            4566789999999985 7999999987642         35899999999999999933999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEECCc
Q psy12579         94 KAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        94 ~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      ++..+++..+..+.|+|.|...
T Consensus        90 ~~~~~~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           90 EAVEAIKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             HHHHHHHTSCSSEEEEECCBSC
T ss_pred             HHHHHHHcCCCeEEEEEEECCC
Confidence            9999999988999999987653

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=5.6e-16  Score=96.33  Aligned_cols=91  Identities=31%  Similarity=0.524  Sum_probs=79.8

Q ss_pred             cCCCCCcEEEEEecCCCCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579         24 SEGHAHPRVVELPKTDEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLK  100 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~  100 (138)
                      +......+.+.+.+...+|||++.++.+.  ..+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+++
T Consensus         6 ~~~~~~~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~   84 (104)
T 2djt_A            6 SGQASGHFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRC-GRLEVGDLVLHINGESTQGLTHAQAVERIR   84 (104)
T ss_dssp             CCSCCCCEEEEEECCSSSCCEEEECCEETTEECCCEEEEECTTCHHHHH-CSCCTTCBEEEETTEECTTCCHHHHHHHHH
T ss_pred             CCCCCceEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34456788999999889999999986543  467999999999999999 7 9999999999999999999999999998


Q ss_pred             hCCCeEEEEEEECCc
Q psy12579        101 QAQRSVKLVVRYTPK  115 (138)
Q Consensus       101 ~~~~~v~l~v~r~~~  115 (138)
                      ..+..+.|+|.|+..
T Consensus        85 ~~g~~v~l~v~R~g~   99 (104)
T 2djt_A           85 AGGPQLHLVIRRPLS   99 (104)
T ss_dssp             HTCSEEEEEECCCCC
T ss_pred             cCCCeEEEEEEECCC
Confidence            888899999988754

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.68  E-value=7.9e-16  Score=94.61  Aligned_cols=85  Identities=29%  Similarity=0.499  Sum_probs=75.0

Q ss_pred             CcEEEEEec-CCCCcCeEEeccCCCCC------CeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579         29 HPRVVELPK-TDEGLGFNVMGGKEQNS------PIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLK  100 (138)
Q Consensus        29 ~~~~v~l~~-~~~~~G~~l~~~~~~~~------~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~  100 (138)
                      .+++|++.+ ...+|||++.++.+...      +++|..|.++|||+++ | |+.||+|++|||.++.++++.++..+++
T Consensus         5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~a-G~L~~GD~I~~ing~~v~~~~~~~~~~~l~   83 (98)
T 1ihj_A            5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLC-GRLKVGDRILSLNGKDVRNSTEQAVIDLIK   83 (98)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHH-CSCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             eEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHh
Confidence            467899998 66899999988765333      7999999999999999 7 9999999999999999999999999998


Q ss_pred             hCCCeEEEEEEECC
Q psy12579        101 QAQRSVKLVVRYTP  114 (138)
Q Consensus       101 ~~~~~v~l~v~r~~  114 (138)
                      ..+..+.|++.|+.
T Consensus        84 ~~g~~v~l~v~R~g   97 (98)
T 1ihj_A           84 EADFKIELEIQTFD   97 (98)
T ss_dssp             HSCSEEEEEEEEC-
T ss_pred             cCCCeEEEEEEeCC
Confidence            88899999999874

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.68  E-value=1.9e-15  Score=91.70  Aligned_cols=86  Identities=33%  Similarity=0.455  Sum_probs=74.9

Q ss_pred             CCCcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         27 HAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        27 ~~~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      +.+.+.|++.+..  .+|||++.++.. ..+++|..|.++|||+++ ||+.||+|++|||..+.++.+.++..+++..+.
T Consensus         4 ~~~~~~v~l~k~~~~~~~G~~~~~~~~-~~gv~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   81 (91)
T 1m5z_A            4 PVELHKVTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLG-GLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGN   81 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEECTT-SSCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTSTT
T ss_pred             CcceEEEEEEECCCCCCccEEEEeccC-CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4567788998865  489999988653 367999999999999999 899999999999999999999888888888888


Q ss_pred             eEEEEEEECC
Q psy12579        105 SVKLVVRYTP  114 (138)
Q Consensus       105 ~v~l~v~r~~  114 (138)
                      .+.|++.|+|
T Consensus        82 ~v~l~v~R~p   91 (91)
T 1m5z_A           82 KLDLVISRNP   91 (91)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEeCc
Confidence            9999998864

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=6.5e-16  Score=98.45  Aligned_cols=88  Identities=39%  Similarity=0.628  Sum_probs=78.5

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      ..++.|.|.++..+|||++.++.+.     ..+++|..|.++++|+++|.|+.||+|++||+..+.++++.++..+++..
T Consensus        16 ~~~~~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   95 (120)
T 2eno_A           16 VTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   95 (120)
T ss_dssp             EEEEEEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH
T ss_pred             CceEEEEEEECCCCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4678899999989999999987653     56899999999999999933999999999999999999999999999888


Q ss_pred             CCeEEEEEEECCc
Q psy12579        103 QRSVKLVVRYTPK  115 (138)
Q Consensus       103 ~~~v~l~v~r~~~  115 (138)
                      +..+.|+|.|++.
T Consensus        96 g~~v~l~v~R~~~  108 (120)
T 2eno_A           96 GYAVSLRVQHRLQ  108 (120)
T ss_dssp             CSEEEEEEEEEEE
T ss_pred             CCeEEEEEEeCCc
Confidence            8899999998764

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.68  E-value=2.4e-15  Score=96.39  Aligned_cols=91  Identities=31%  Similarity=0.538  Sum_probs=80.2

Q ss_pred             CCCcEEEEEecCCCCcCeEEeccCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         27 HAHPRVVELPKTDEGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        27 ~~~~~~v~l~~~~~~~G~~l~~~~~~-~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      ..+.++|.+.++..+|||++.++.+. ..+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++..+..
T Consensus        23 ~~~~~~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~  102 (124)
T 2daz_A           23 PGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSK  102 (124)
T ss_dssp             SSEEEEEEEECCSSCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSE
T ss_pred             CCceEEEEEEeCCCccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            35678899999989999999987643 35899999999999999934999999999999999999999999999998889


Q ss_pred             EEEEEEECCchH
Q psy12579        106 VKLVVRYTPKVL  117 (138)
Q Consensus       106 v~l~v~r~~~~~  117 (138)
                      +.|+|.|+...+
T Consensus       103 v~l~v~R~~~~~  114 (124)
T 2daz_A          103 VKLVFIRNEDAV  114 (124)
T ss_dssp             EEEEEEECTTHH
T ss_pred             EEEEEEeCCCcc
Confidence            999999987653

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.68  E-value=6.1e-16  Score=96.18  Aligned_cols=88  Identities=27%  Similarity=0.508  Sum_probs=76.2

Q ss_pred             CCCcEEEEEecCCCCcCeEEeccCCCCCCe-EEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh----
Q psy12579         27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPI-YISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ----  101 (138)
Q Consensus        27 ~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v-~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~----  101 (138)
                      ....+.|.+.+...+|||+|.++.+...++ +|..|.+++||+++|.|+.||+|++|||.++.+++|+++..+++.    
T Consensus         4 g~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~   83 (103)
T 1ufx_A            4 GSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKT   83 (103)
T ss_dssp             CSSSEEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHC
T ss_pred             CCceEEEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhccc
Confidence            345788999988899999999987654454 999999999999994499999999999999999999999999987    


Q ss_pred             -CCCeEEEEEEECC
Q psy12579        102 -AQRSVKLVVRYTP  114 (138)
Q Consensus       102 -~~~~v~l~v~r~~  114 (138)
                       .++.+.+++.|..
T Consensus        84 ~~~~~i~l~v~r~~   97 (103)
T 1ufx_A           84 KDRDYIDFLVTEFN   97 (103)
T ss_dssp             SSCSEEEEEECCCC
T ss_pred             CCCCeEEEEEEEcc
Confidence             4678888888764

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.68  E-value=4.4e-16  Score=99.04  Aligned_cols=97  Identities=38%  Similarity=0.706  Sum_probs=83.7

Q ss_pred             ccCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         23 ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        23 ~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      .......+++|.|.+...+|||++.++.+ ..+++|..|.++|||+++ | |+.||+|++|||..+.++++.++..+++.
T Consensus         8 ~~~~~~~~~~v~l~k~~~glG~~l~~~~~-~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   85 (119)
T 1tp5_A            8 EEDIPREPRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLS-GELRKGDQILSVNGVDLRNASHEQAAIALKN   85 (119)
T ss_dssp             GSCCCCSCEEEEEECTTSCCCEEEEECGG-GCCEEEEEECTTSHHHHH-SCCCTTEEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CCCCCCccEEEEEEECCCCccEEEecCCC-CCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            34455789999999998899999998643 357999999999999999 7 99999999999999999999888888888


Q ss_pred             CCCeEEEEEEECCchHHHHH
Q psy12579        102 AQRSVKLVVRYTPKVLEEME  121 (138)
Q Consensus       102 ~~~~v~l~v~r~~~~~~~~~  121 (138)
                      .+..+.|++.|.+..+..++
T Consensus        86 ~~~~v~l~v~r~~~~~~~~~  105 (119)
T 1tp5_A           86 AGQTVTIIAQYKPEEYSRFE  105 (119)
T ss_dssp             SCSEEEEEEEECHHHHHTTS
T ss_pred             CCCeEEEEEEECCchhcccc
Confidence            89999999999876554433

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.68  E-value=6e-16  Score=94.98  Aligned_cols=86  Identities=37%  Similarity=0.692  Sum_probs=76.3

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCC----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      +...|++.++..+|||++.++.+.    ..+++|..|.++|||+++ | |++||.|++|||.++.++++.++..+++..+
T Consensus         3 ~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~a-G~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   81 (97)
T 2jil_A            3 RTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADRE-GTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG   81 (97)
T ss_dssp             EEEEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             eEEEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            356788888888999999987532    357999999999999999 7 9999999999999999999999999999888


Q ss_pred             CeEEEEEEECCc
Q psy12579        104 RSVKLVVRYTPK  115 (138)
Q Consensus       104 ~~v~l~v~r~~~  115 (138)
                      ..+.|++.|++.
T Consensus        82 ~~v~l~v~R~~~   93 (97)
T 2jil_A           82 QEAALLIEYDVS   93 (97)
T ss_dssp             SEEEEEEEEECC
T ss_pred             CeEEEEEEeCCC
Confidence            999999999764

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.68  E-value=1.2e-15  Score=92.99  Aligned_cols=85  Identities=32%  Similarity=0.531  Sum_probs=75.1

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      ..+.|++.+.+.+|||++.+. +...+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++..++.+.|
T Consensus         4 ~~r~v~l~k~~~~lG~~i~~~-~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l   82 (93)
T 3o46_A            4 SVKIIRLVKNREPLGATIKKD-EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITF   82 (93)
T ss_dssp             CCEEEEEEESSSCCCEEEEEC-TTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEE
T ss_pred             cEEEEEEEeCCCCccEEEEec-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence            568899999888999999875 3346799999999999999944999999999999999999999999999998888999


Q ss_pred             EEEECC
Q psy12579        109 VVRYTP  114 (138)
Q Consensus       109 ~v~r~~  114 (138)
                      ++.+..
T Consensus        83 ~v~~~~   88 (93)
T 3o46_A           83 KIIPGS   88 (93)
T ss_dssp             EEECC-
T ss_pred             EEEeCC
Confidence            988764

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.68  E-value=5.9e-16  Score=92.76  Aligned_cols=82  Identities=32%  Similarity=0.511  Sum_probs=72.2

Q ss_pred             EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579         31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV  110 (138)
Q Consensus        31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v  110 (138)
                      .+|++ +++.+|||++.++.+...+++|..|.++|||+++ ||+.||.|++|||.++.++++.++..+++..+..+.|++
T Consensus         3 ~~v~l-~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v   80 (85)
T 1rgw_A            3 YSVTL-TGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL   80 (85)
T ss_dssp             EEEEE-CCSSCCCEEECCCGGGTSCCBEEEECTTSHHHHS-SCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEE
T ss_pred             EEEEE-eCCCccCEEEEeccCCCCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEE
Confidence            45777 4567899999987766668999999999999998 999999999999999999999999999988888899999


Q ss_pred             EECC
Q psy12579        111 RYTP  114 (138)
Q Consensus       111 ~r~~  114 (138)
                      .|+.
T Consensus        81 ~R~~   84 (85)
T 1rgw_A           81 QKSK   84 (85)
T ss_dssp             ESCC
T ss_pred             EeCC
Confidence            8764

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=6.6e-16  Score=94.39  Aligned_cols=86  Identities=30%  Similarity=0.458  Sum_probs=75.8

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK  107 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~  107 (138)
                      ..++.|++ ++..+|||.+.++.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++..+..+.
T Consensus         7 ~~~~~v~l-~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~   84 (94)
T 2eeg_A            7 GMPHSVTL-RGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALA-ALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLT   84 (94)
T ss_dssp             CCCEEEEE-CCSSCCSCCEECCTTTTSCCEECCCCSSSHHHHT-TCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEE
T ss_pred             CceEEEEE-eCCCccCEEEECccCCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            45677888 4557899999998776678999999999999999 899999999999999999999999988888888999


Q ss_pred             EEEEECCc
Q psy12579        108 LVVRYTPK  115 (138)
Q Consensus       108 l~v~r~~~  115 (138)
                      |+|.|+..
T Consensus        85 l~v~R~g~   92 (94)
T 2eeg_A           85 LSVSSGPS   92 (94)
T ss_dssp             EEEECCSS
T ss_pred             EEEEeCCC
Confidence            99988753

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.68  E-value=1.4e-16  Score=95.22  Aligned_cols=82  Identities=30%  Similarity=0.537  Sum_probs=73.9

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK  107 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~  107 (138)
                      +.+++|++.++..+|||++.+.    .+++|..|.+++||+++ ||+.||.|++|||.++.++++.++..+++..+..+.
T Consensus         1 ~~~r~v~l~~~~~g~G~~~~~~----~~~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~   75 (83)
T 2kv8_A            1 PRVRSVEVARGRAGYGFTLSGQ----APCVLSCVMRGSPADFV-GLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLH   75 (83)
T ss_dssp             CCEEEEEECCCSSCCSCBCCCS----SSCBCCBCCTTSTTTTT-TCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEE
T ss_pred             CCcEEEEEEeCCCcccEEEEcC----CCeEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            4678999999999999998763    46999999999999999 899999999999999999999999999988778899


Q ss_pred             EEEEECC
Q psy12579        108 LVVRYTP  114 (138)
Q Consensus       108 l~v~r~~  114 (138)
                      |++.|++
T Consensus        76 l~v~R~~   82 (83)
T 2kv8_A           76 MVIAEGV   82 (83)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9998875

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.68  E-value=7.4e-16  Score=96.86  Aligned_cols=88  Identities=36%  Similarity=0.704  Sum_probs=78.5

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      ..+..++.|.+.+...+|||.+.++.  +.+++|..|.++++|+++ | |+.||+|++|||..+.++++.++..+++..+
T Consensus        11 ~~~~~~~~v~l~~~~~~lG~~l~~~~--~~g~~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   87 (111)
T 2dlu_A           11 VCWGHVEEVELINDGSGLGFGIVGGK--TSGVVVRTIVPGGLADRD-GRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG   87 (111)
T ss_dssp             CSCSEEEEEEEECCSSCCCEEEECCS--SSSBEEEEECTTSSHHHH-TCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHC
T ss_pred             cCcCceEEEEEEeCCCccCEEEeccC--CCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            44567788999998899999999764  357999999999999999 6 9999999999999999999999999998888


Q ss_pred             CeEEEEEEECCc
Q psy12579        104 RSVKLVVRYTPK  115 (138)
Q Consensus       104 ~~v~l~v~r~~~  115 (138)
                      ..+.|+|.|++.
T Consensus        88 ~~v~l~v~R~~~   99 (111)
T 2dlu_A           88 NSVRMLVARDPA   99 (111)
T ss_dssp             SEEEEEEEESCT
T ss_pred             CeEEEEEEeCCC
Confidence            899999998763

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.67  E-value=2.6e-15  Score=94.16  Aligned_cols=90  Identities=29%  Similarity=0.510  Sum_probs=79.3

Q ss_pred             CCCCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         26 GHAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      ...+.++|++.++..+|||++.++.+.   ..+++|..|.+++||+++ | |+.||+|++|||.++.++++.++..+++.
T Consensus         5 ~~~~~~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   83 (110)
T 1um1_A            5 SSGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAAD-GRLSLGDRILEVNGSSLLGLGYLRAVDLIRH   83 (110)
T ss_dssp             SCCCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHH-SCCCTTCEEEEESSCBCSSCCHHHHHHHHHT
T ss_pred             CCCcEEEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            345778899999889999999986542   357999999999999999 6 99999999999999999999999999998


Q ss_pred             CCCeEEEEEEECCch
Q psy12579        102 AQRSVKLVVRYTPKV  116 (138)
Q Consensus       102 ~~~~v~l~v~r~~~~  116 (138)
                      .+..+.|+|.|+...
T Consensus        84 ~~~~v~l~v~R~~~~   98 (110)
T 1um1_A           84 GGKKMRFLVAKSDVE   98 (110)
T ss_dssp             CCSEEEEEEECCCHH
T ss_pred             CCCeEEEEEEeCCcc
Confidence            889999999998643

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.67  E-value=1.9e-15  Score=92.20  Aligned_cols=85  Identities=31%  Similarity=0.538  Sum_probs=74.9

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      .....+|+|.+.++..+|||.+.+    ..+++|..|.+++||+++ ||+.||+|++|||.++.++.+.++...++ .+.
T Consensus         4 ~~~~~~r~v~l~~~~~~~G~~l~~----~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~   77 (93)
T 2dls_A            4 GSSGVQRCVIIQKDQHGFGFTVSG----DRIVLVQSVRPGGAAMKA-GVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGA   77 (93)
T ss_dssp             CCCCCEEEEEEECSSSSCCEEEEC----SSSCEEEEECSSSTTTTT-TCCSSCEEEEETTEECSSSCHHHHHHHHT-SSS
T ss_pred             CCCCCCEEEEEEeCCCceeEEEeC----CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHhhc-CCC
Confidence            445678999999999999999986    357999999999999999 89999999999999999998888888776 688


Q ss_pred             eEEEEEEECCc
Q psy12579        105 SVKLVVRYTPK  115 (138)
Q Consensus       105 ~v~l~v~r~~~  115 (138)
                      .+.|+|.|++.
T Consensus        78 ~v~l~v~R~~~   88 (93)
T 2dls_A           78 YVALTLLGSSS   88 (93)
T ss_dssp             EEEEEEECCCC
T ss_pred             EEEEEEEECCC
Confidence            99999998753

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.67  E-value=2.8e-15  Score=96.15  Aligned_cols=89  Identities=21%  Similarity=0.372  Sum_probs=78.1

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      ..++++++.+.. .+|||++.++.+...+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++..++.+
T Consensus        18 ~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v   97 (125)
T 3hpk_A           18 TVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEV   97 (125)
T ss_dssp             EEEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEE
T ss_pred             CCCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            467888898866 6899999998766678999999999999999339999999999999999999999999999998889


Q ss_pred             EEEEEECCch
Q psy12579        107 KLVVRYTPKV  116 (138)
Q Consensus       107 ~l~v~r~~~~  116 (138)
                      .+++.|....
T Consensus        98 ~l~v~r~~~~  107 (125)
T 3hpk_A           98 TIHYNKLQAD  107 (125)
T ss_dssp             EEEEEEECSC
T ss_pred             EEEEEECCCC
Confidence            9999885443

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.67  E-value=7.8e-16  Score=96.62  Aligned_cols=89  Identities=30%  Similarity=0.549  Sum_probs=76.0

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      ......+.|++.++ .+|||++.++.+.  ..+++|..|.++++|+++|.|+.||+|++|||.++.++++.++..+++..
T Consensus        11 ~~~~~~~~v~l~k~-~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~   89 (109)
T 1wi4_A           11 DRDPAFRVITVTKE-TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRA   89 (109)
T ss_dssp             CCCTTEEEEEECCS-SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHS
T ss_pred             CCCCcEEEEEEeCC-CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcc
Confidence            44467788999886 8999999987653  33699999999999999944999999999999999999999999999886


Q ss_pred             C----CeEEEEEEECC
Q psy12579        103 Q----RSVKLVVRYTP  114 (138)
Q Consensus       103 ~----~~v~l~v~r~~  114 (138)
                      .    ..+.+.+.|+.
T Consensus        90 ~~r~~~~~~l~v~R~~  105 (109)
T 1wi4_A           90 KLRSESPWEIAFIRSG  105 (109)
T ss_dssp             CCSSSSCEEEEEECCC
T ss_pred             ccCCCceEEEEEEeCC
Confidence            4    67888888864

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.67  E-value=8.9e-16  Score=92.81  Aligned_cols=83  Identities=24%  Similarity=0.463  Sum_probs=72.9

Q ss_pred             cEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         30 PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        30 ~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      .|.|+|.|+. .+|||++.+..  ..+++|..|.++|||+++++|+.||.|++|||.++.+++++++..+++.....+.|
T Consensus         2 ~r~V~l~K~~~~~lG~~i~~~~--~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l   79 (88)
T 1kwa_A            2 SRLVQFQKNTDEPMGITLKMNE--LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITF   79 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSC--GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEE
T ss_pred             eEEEEEEeCCCCceeEEEEeCC--CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEE
Confidence            5789999985 88999998742  35699999999999999559999999999999999999999999999987668888


Q ss_pred             EEEECC
Q psy12579        109 VVRYTP  114 (138)
Q Consensus       109 ~v~r~~  114 (138)
                      ++.|..
T Consensus        80 ~v~r~~   85 (88)
T 1kwa_A           80 KIVPSY   85 (88)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            888764

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.67  E-value=6.7e-16  Score=98.04  Aligned_cols=89  Identities=27%  Similarity=0.536  Sum_probs=77.3

Q ss_pred             CCcEEEEEecCC-------CCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579         28 AHPRVVELPKTD-------EGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA   95 (138)
Q Consensus        28 ~~~~~v~l~~~~-------~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~   95 (138)
                      ...+.+++.+..       .+|||+|.++.+.     ..+++|..|.++++|+++|.|+.||+|++|||.++.++++.++
T Consensus        11 ~~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~   90 (117)
T 1ujd_A           11 FPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEV   90 (117)
T ss_dssp             SCEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHH
T ss_pred             CceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHH
Confidence            456778888876       7899999987642     2369999999999999993399999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEECCch
Q psy12579         96 VELLKQAQRSVKLVVRYTPKV  116 (138)
Q Consensus        96 ~~~l~~~~~~v~l~v~r~~~~  116 (138)
                      ..+++..+..+.|+|.|++..
T Consensus        91 ~~~l~~~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           91 QSIISQQSGEAEICVRLDLNM  111 (117)
T ss_dssp             HHHHSCCSSCEEEEEESSCCC
T ss_pred             HHHHhcCCCEEEEEEEECCcc
Confidence            999999889999999998754

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.66  E-value=1.2e-15  Score=95.46  Aligned_cols=92  Identities=37%  Similarity=0.628  Sum_probs=79.9

Q ss_pred             cCCCCCcEEEEEecCCCCcCeEEe-----ccCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579         24 SEGHAHPRVVELPKTDEGLGFNVM-----GGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA   95 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~~~~G~~l~-----~~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~   95 (138)
                      +..+.+.++|.|.+++.+|||++.     ++.+.   ..+++|..|.++|||+++|.|+.||.|++|||..+.++++.++
T Consensus         4 p~~~~~~~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~   83 (108)
T 1q7x_A            4 PPKPGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQA   83 (108)
T ss_dssp             CCCSSSEEEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHH
T ss_pred             CCCCCcEEEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            345567889999999999999999     65432   4689999999999999993399999999999999998899999


Q ss_pred             HHHHHhCCCeEEEEEEECCc
Q psy12579         96 VELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        96 ~~~l~~~~~~v~l~v~r~~~  115 (138)
                      ..+++..+..+.|++.|+..
T Consensus        84 ~~~~~~~g~~v~l~v~R~~~  103 (108)
T 1q7x_A           84 VETLRNTGQVVHLLLEKGQS  103 (108)
T ss_dssp             HHHHHHTTSEEEEEEECCCC
T ss_pred             HHHHHcCCCeEEEEEEeCCc
Confidence            99999999999999998764

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.66  E-value=1.2e-15  Score=95.11  Aligned_cols=91  Identities=33%  Similarity=0.536  Sum_probs=75.7

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      +...+..+|++ ++..+|||++.++.+   ...+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++.
T Consensus         7 ~~~~~~~~v~l-~~~~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~   85 (106)
T 3axa_A            7 HKEPEIITVTL-KKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR   85 (106)
T ss_dssp             ---CCEEEEEE-ECSSSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CCCceEEEEEE-CCCCccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            34456666777 778899999987532   24579999999999999993399999999999999999999999999988


Q ss_pred             CCCeEEEEEEECCch
Q psy12579        102 AQRSVKLVVRYTPKV  116 (138)
Q Consensus       102 ~~~~v~l~v~r~~~~  116 (138)
                      .+..+.|++.|+...
T Consensus        86 ~g~~v~l~v~R~~~~  100 (106)
T 3axa_A           86 TSSVVTLEVAKQGAI  100 (106)
T ss_dssp             CCSEEEEEEECCCSS
T ss_pred             CCCeEEEEEEeCCcc
Confidence            999999999998654

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.66  E-value=5e-16  Score=98.50  Aligned_cols=92  Identities=35%  Similarity=0.563  Sum_probs=79.8

Q ss_pred             cCCCCCcEEEEEecCC-CCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCC-CCCHHHHHH
Q psy12579         24 SEGHAHPRVVELPKTD-EGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVE-GEDHGKAVE   97 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~-~~~~~~~~~   97 (138)
                      ......++.|.+.+.. .+|||++.++.+.   ..+++|..|.++|||+++ | |+.||+|++|||.++. ++++.++..
T Consensus        15 ~~~~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~a-G~l~~GD~Il~ing~~v~~~~~~~~~~~   93 (117)
T 2o2t_A           15 MAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRD-GRLKETDQILAINGQALDQTITHQQAIS   93 (117)
T ss_dssp             HHTTSCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHH-CCCCTTCEEEEETTEECCTTSCHHHHHH
T ss_pred             hccCCeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCCHHHHHH
Confidence            3445688999999974 7899999876532   357999999999999999 6 9999999999999998 889999999


Q ss_pred             HHHhCCCeEEEEEEECCch
Q psy12579         98 LLKQAQRSVKLVVRYTPKV  116 (138)
Q Consensus        98 ~l~~~~~~v~l~v~r~~~~  116 (138)
                      +++..+..+.|++.|++..
T Consensus        94 ~l~~~~~~v~l~v~R~~~~  112 (117)
T 2o2t_A           94 ILQKAKDTVQLVIARGSLP  112 (117)
T ss_dssp             HHHHCCSEEEEEEESSCCG
T ss_pred             HHHcCCCEEEEEEEeCCcc
Confidence            9999999999999998653

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.66  E-value=1e-15  Score=92.58  Aligned_cols=84  Identities=30%  Similarity=0.446  Sum_probs=73.0

Q ss_pred             cEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579         30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV  109 (138)
Q Consensus        30 ~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~  109 (138)
                      +.++++. ++.+|||++.++.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++..+..+.|+
T Consensus         4 ~~~v~~~-~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   81 (89)
T 2q3g_A            4 SFKVVLE-GPAPWGFRLQGGKDFNVPLSISRLTPGGKAAQA-GVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLG   81 (89)
T ss_dssp             EEEEEEE-SSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHT-TCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEE
T ss_pred             EEEEEEc-CCCcccEEEECcCCCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence            4456665 457899999987765667999999999999999 89999999999999999999999999998888899999


Q ss_pred             EEECCc
Q psy12579        110 VRYTPK  115 (138)
Q Consensus       110 v~r~~~  115 (138)
                      +.|+..
T Consensus        82 v~R~~~   87 (89)
T 2q3g_A           82 LSRAIT   87 (89)
T ss_dssp             EEEECC
T ss_pred             EEeCCC
Confidence            988753

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.66  E-value=1e-15  Score=95.62  Aligned_cols=91  Identities=27%  Similarity=0.550  Sum_probs=77.9

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEec---cCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL   98 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~---~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~   98 (138)
                      +...+.+.|.|.+...+|||++.+   +.+   ...+++|..|.+++||+++|.|+.||+|++|||.++.++++.++..+
T Consensus         5 ~~~~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   84 (107)
T 1wf8_A            5 SSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATV   84 (107)
T ss_dssp             CCCEEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHH
T ss_pred             cCCceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            444667789999888999999998   332   13479999999999999993399999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEECCc
Q psy12579         99 LKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        99 l~~~~~~v~l~v~r~~~  115 (138)
                      ++..+..+.|+|.|...
T Consensus        85 ~~~~~~~v~l~v~R~~~  101 (107)
T 1wf8_A           85 LRNTKGNVRFVIGREKP  101 (107)
T ss_dssp             HHHCCSEEEEEEEEECC
T ss_pred             HhcCCCeEEEEEEeCCC
Confidence            99999999999988753

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.66  E-value=4.4e-16  Score=98.07  Aligned_cols=95  Identities=42%  Similarity=0.741  Sum_probs=83.5

Q ss_pred             CCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         26 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ...+++.|++.+...+|||++.++.+ ..+++|..|.++++|+++ | |+.||+|++||+.++.++++.++..+++..+.
T Consensus        12 ~~~~~~~v~l~k~~~glG~~l~~~~~-~~gv~V~~V~~~s~A~~a-G~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~   89 (113)
T 1um7_A           12 DAREPRKIILHKGSTGLGFNIVGGED-GEGIFVSFILAGGPADLS-GELRRGDRILSVNGVNLRNATHEQAAAALKRAGQ   89 (113)
T ss_dssp             CCCSEEEEEEECCSSCSSBCCBCCST-TCCCBCCCBCSSSHHHHT-TCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCS
T ss_pred             CCCceEEEEEEECCCcccEEEEeccC-CCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            34688999999988999999988654 467999999999999999 7 99999999999999999999999999988889


Q ss_pred             eEEEEEEECCchHHHHHH
Q psy12579        105 SVKLVVRYTPKVLEEMEM  122 (138)
Q Consensus       105 ~v~l~v~r~~~~~~~~~~  122 (138)
                      .+.|++.|++..+..+..
T Consensus        90 ~v~l~v~r~~~~~~~~~~  107 (113)
T 1um7_A           90 SVTIVAQYRPEEYSRFES  107 (113)
T ss_dssp             EEEEEEECCHHHHHHHHH
T ss_pred             cEEEEEEECcchhhhhhc
Confidence            999999999877666544

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.66  E-value=7.3e-16  Score=98.05  Aligned_cols=87  Identities=30%  Similarity=0.528  Sum_probs=77.0

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhc-CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRH-GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--  103 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~-~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~--  103 (138)
                      ...++|++.++. .+|||++.++.+...+++|..|.++|||+++ ++|+.||+|++|||.++.++++.++..+++..+  
T Consensus        14 ~~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~   93 (119)
T 2cs5_A           14 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCER   93 (119)
T ss_dssp             SCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHC
T ss_pred             CCeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccc
Confidence            567889999977 4599999988765667999999999999998 799999999999999999999999999998874  


Q ss_pred             --CeEEEEEEECC
Q psy12579        104 --RSVKLVVRYTP  114 (138)
Q Consensus       104 --~~v~l~v~r~~  114 (138)
                        ..+.|+|.|+.
T Consensus        94 ~~~~v~l~v~R~~  106 (119)
T 2cs5_A           94 HSGELMLLVRPNA  106 (119)
T ss_dssp             CSSCEEEEEECCC
T ss_pred             CCCEEEEEEEccc
Confidence              48999998874

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.66  E-value=2.2e-15  Score=90.69  Aligned_cols=77  Identities=26%  Similarity=0.512  Sum_probs=69.5

Q ss_pred             cCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12579         37 KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP  114 (138)
Q Consensus        37 ~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~  114 (138)
                      +++.+|||++.++.+...+++|..|.++|||+++ ||+.||.|++|||.++.++++.++..+++..+..+.|++.|+.
T Consensus         9 ~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~   85 (87)
T 2pa1_A            9 AGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDA-DLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRIT   85 (87)
T ss_dssp             CSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHT-TCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEECC
T ss_pred             CCCCccCEEEecccCCCCCEEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecC
Confidence            3557899999987765568999999999999998 9999999999999999999999999999988788999999875

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.65  E-value=1.3e-15  Score=95.04  Aligned_cols=85  Identities=31%  Similarity=0.542  Sum_probs=75.4

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC--CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG--LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g--l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ...+.+.+.++. .+|||.+.++.+...+++|..|.++++|+++ |  |+.||+|++|||.++.++++.++..+++..+.
T Consensus        16 ~~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~a-G~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~   94 (107)
T 3nfk_A           16 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLC-VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCE   94 (107)
T ss_dssp             CCCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHS-SSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGG
T ss_pred             CCEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHc-CCccCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence            567889998877 7899999987765567999999999999999 6  99999999999999999999999999988764


Q ss_pred             ----eEEEEEEEC
Q psy12579        105 ----SVKLVVRYT  113 (138)
Q Consensus       105 ----~v~l~v~r~  113 (138)
                          .+.|+|.|+
T Consensus        95 ~~~~~v~l~v~r~  107 (107)
T 3nfk_A           95 RHSGELMLLVRPN  107 (107)
T ss_dssp             SBTTBEEEEEECC
T ss_pred             cCCcEEEEEEEcC
Confidence                899998874

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=9.2e-16  Score=95.64  Aligned_cols=87  Identities=30%  Similarity=0.483  Sum_probs=77.6

Q ss_pred             CCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         26 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      .+..+|+|.|.+++.+|||++.+... ..+++|..|.+++||+++ ||+.||.|++|||.++.++++.++..+++..+..
T Consensus         5 ~~~~~r~v~l~k~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   82 (106)
T 2eei_A            5 SSGQPRLCYLVKEGGSYGFSLKTVQG-KKGVYMTDITPQGVAMRA-GVLADDHLIEVNGENVEDASHEEVVEKVKKSGSR   82 (106)
T ss_dssp             CCSSSEEEEEECCSSSCSCCEECCSS-CCSCEECCCCTTSHHHHH-TCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSE
T ss_pred             CCCCCEEEEEEECCCCCCEEEEeccC-CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            46789999999988999999986543 457999999999999999 8999999999999999999999999999888889


Q ss_pred             EEEEEEECC
Q psy12579        106 VKLVVRYTP  114 (138)
Q Consensus       106 v~l~v~r~~  114 (138)
                      +.+++.|..
T Consensus        83 v~l~v~r~~   91 (106)
T 2eei_A           83 VMFLLVDKE   91 (106)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEEEcCc
Confidence            999998765

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.65  E-value=4.1e-15  Score=90.36  Aligned_cols=85  Identities=33%  Similarity=0.588  Sum_probs=74.8

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      .+..+|++.+.. .+|||++.++.+ ..+++|..|.++|||+++ | |+.||.|++|||.++.+.++.++..+++..+..
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   80 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVGKRN-DTGVFVSDIVKGGIADAD-GRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGT   80 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEECCSS-SCSCEEEEECTTSHHHHH-TCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred             ceEEEEEEEeCCCCcccEEEEeccC-CCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            356789998864 789999988654 468999999999999999 6 999999999999999999999999999988899


Q ss_pred             EEEEEEECC
Q psy12579        106 VKLVVRYTP  114 (138)
Q Consensus       106 v~l~v~r~~  114 (138)
                      +.|++.|..
T Consensus        81 v~l~v~R~~   89 (92)
T 2qg1_A           81 VTLEVGRIS   89 (92)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEccc
Confidence            999998875

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.65  E-value=4.4e-15  Score=91.87  Aligned_cols=92  Identities=29%  Similarity=0.426  Sum_probs=76.5

Q ss_pred             cCCCCCcEEEEEecCC-CCcCeEEeccCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579         24 SEGHAHPRVVELPKTD-EGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK  100 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~~--~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~  100 (138)
                      .+.....+.|++.+.. .+|||++.....  ...+++|..|.+++||+++++|+.||+|++|||.++.+.++.++..+++
T Consensus         4 ~~~~~~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~   83 (101)
T 2yt7_A            4 GSSGDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVR   83 (101)
T ss_dssp             CSTTCCCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHH
T ss_pred             CCCCCceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3445677889998755 789999975221  1226999999999999997689999999999999999999999999998


Q ss_pred             h--CCCeEEEEEEECCc
Q psy12579        101 Q--AQRSVKLVVRYTPK  115 (138)
Q Consensus       101 ~--~~~~v~l~v~r~~~  115 (138)
                      .  .+..+.|+|.|.++
T Consensus        84 ~~~~g~~v~l~v~R~~p  100 (101)
T 2yt7_A           84 ETKSQTSVTLSIVHCPP  100 (101)
T ss_dssp             HTTTSSEEEEEECCCCC
T ss_pred             hCCCCCeEEEEEEeCCC
Confidence            8  67899999988764

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.65  E-value=1.3e-15  Score=98.55  Aligned_cols=106  Identities=26%  Similarity=0.398  Sum_probs=79.9

Q ss_pred             CCChhhhHHHhhhhccCCCCCcEEEEEecC----------CCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCC
Q psy12579          9 RASATAKATVAAFAASEGHAHPRVVELPKT----------DEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKR   75 (138)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~----------~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~   75 (138)
                      .++..++.++.-............+.+.+.          ..+|||++.++.+.   ..+++|..|.++++|+++|.|+.
T Consensus         7 ~~~~~~~~p~~~~~~~~~~~~i~~v~l~~~~~~~~i~k~~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~   86 (131)
T 1wfg_A            7 GHSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRP   86 (131)
T ss_dssp             CCCCSCCCSCEEEECSSSSEEEEEEEEECSCTTSCCCSCSCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCT
T ss_pred             CCCCCCCCCCcccCCCCCCceeeEEEEeccceeEEEecCCCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCC
Confidence            334444444433333333444455666654          46899999886543   23799999999999999933999


Q ss_pred             CCEEEEECCeeCCCCCHHHHHHHHHhCC--CeEEEEEEECC
Q psy12579         76 GDQLLSVNGVSVEGEDHGKAVELLKQAQ--RSVKLVVRYTP  114 (138)
Q Consensus        76 gD~i~~ing~~v~~~~~~~~~~~l~~~~--~~v~l~v~r~~  114 (138)
                      ||+|++|||..+.++++.++..+++..+  ..+.|+|.|+.
T Consensus        87 GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  127 (131)
T 1wfg_A           87 GDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG  127 (131)
T ss_dssp             TCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred             CCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence            9999999999999999999999998864  88999998864

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.65  E-value=1.9e-15  Score=97.49  Aligned_cols=87  Identities=29%  Similarity=0.459  Sum_probs=76.7

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~  105 (138)
                      .+..+|++.++..+|||++.++.+...+++|..|.++|+|+++|.|+.||+|++|||..+.++++.++..+++..  +..
T Consensus        17 g~~~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~   96 (129)
T 2kpk_A           17 GKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGAS   96 (129)
T ss_dssp             SEEEEEEEEECSSCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEE
T ss_pred             CcEEEEEEEECCCcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            456678899988999999998765556799999999999999933999999999999999999999999999887  678


Q ss_pred             EEEEEEECC
Q psy12579        106 VKLVVRYTP  114 (138)
Q Consensus       106 v~l~v~r~~  114 (138)
                      +.|+|.|..
T Consensus        97 v~l~v~R~~  105 (129)
T 2kpk_A           97 VDLELCRGY  105 (129)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEeCC
Confidence            999999875

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.65  E-value=1.6e-15  Score=97.69  Aligned_cols=91  Identities=31%  Similarity=0.565  Sum_probs=79.2

Q ss_pred             CCCCCcEEEEEecCC-CCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCC-CCCHHHHHHHH
Q psy12579         25 EGHAHPRVVELPKTD-EGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE-GEDHGKAVELL   99 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~-~~~~~~~~~~l   99 (138)
                      .....++.|.+.++. .+|||++.++.+.   ..+++|..|.+++||+++|.|+.||+|++|||.++. ++++.++..++
T Consensus        21 ~~~~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l  100 (128)
T 2db5_A           21 AQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALL  100 (128)
T ss_dssp             HTTCEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHH
T ss_pred             cccCceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHH
Confidence            446678899999986 6999999876543   237999999999999999339999999999999997 99999999999


Q ss_pred             HhCCCeEEEEEEECCc
Q psy12579        100 KQAQRSVKLVVRYTPK  115 (138)
Q Consensus       100 ~~~~~~v~l~v~r~~~  115 (138)
                      +..+..+.|+|.|.+.
T Consensus       101 ~~~~~~v~l~v~r~~~  116 (128)
T 2db5_A          101 QQTTGSLRLIVAREPV  116 (128)
T ss_dssp             HHCCSEEEEEEEECCC
T ss_pred             HcCCCeEEEEEEcCCC
Confidence            9999999999999863

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.65  E-value=6.2e-15  Score=90.12  Aligned_cols=85  Identities=25%  Similarity=0.445  Sum_probs=74.6

Q ss_pred             CcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         29 HPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        29 ~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      +...|.|.+..  .+|||++.++.+ ..+++|..|.++|||+++ | |++||.|++|||.++.++++.++...++..+..
T Consensus         3 ~~~~v~l~k~~~~~~lG~~~~~~~~-~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~   80 (95)
T 2vwr_A            3 EILQVALHKRDSGEQLGIKLVRRTD-EPGVFILDLLEGGLAAQD-GRLSSNDRVLAINGHDLKYGTPELAAQIIQASGER   80 (95)
T ss_dssp             EEEEEEEECSSTTCCCCEEEEECSS-SCSEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSE
T ss_pred             EEEEEEEEECCCCCcccEEEEeccC-CCCEEEEEeCCCChHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            45678898853  689999987654 457999999999999999 6 999999999999999999999999999988999


Q ss_pred             EEEEEEECCc
Q psy12579        106 VKLVVRYTPK  115 (138)
Q Consensus       106 v~l~v~r~~~  115 (138)
                      +.|++.|+..
T Consensus        81 v~l~v~R~~~   90 (95)
T 2vwr_A           81 VNLTIARPGK   90 (95)
T ss_dssp             EEEEEEEESC
T ss_pred             EEEEEEcCCc
Confidence            9999998754

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.64  E-value=1.6e-15  Score=95.04  Aligned_cols=87  Identities=28%  Similarity=0.446  Sum_probs=74.8

Q ss_pred             CCcEEEEEecC-CCCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--
Q psy12579         28 AHPRVVELPKT-DEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--  102 (138)
Q Consensus        28 ~~~~~v~l~~~-~~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--  102 (138)
                      ..+++|.|.+. ..+|||++.++.+.  ..+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++..  
T Consensus         4 ~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~   83 (108)
T 3cbz_A            4 MNIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVH   83 (108)
T ss_dssp             CCEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHT
T ss_pred             ceEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccc
Confidence            36788999874 48899999987543  46799999999999999944999999999999999999999999999876  


Q ss_pred             -CCeEEEEEEECC
Q psy12579        103 -QRSVKLVVRYTP  114 (138)
Q Consensus       103 -~~~v~l~v~r~~  114 (138)
                       +..+.|+|.|..
T Consensus        84 ~~~~v~l~v~R~~   96 (108)
T 3cbz_A           84 KPGPIVLTVAKSG   96 (108)
T ss_dssp             SSSCEEEEEECCC
T ss_pred             CCCeEEEEEEeCC
Confidence             457999998864

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.64  E-value=3.7e-15  Score=100.41  Aligned_cols=89  Identities=28%  Similarity=0.512  Sum_probs=77.1

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEec---cCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMG---GKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL   98 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~---~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~   98 (138)
                      ....+...|.+.++..+|||+|.+   +.+.   ..+++|..|.+++||+++|.|+.||+|++|||..+.++++.++..+
T Consensus        76 ~~~~~~~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~  155 (170)
T 3egg_C           76 VERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASV  155 (170)
T ss_dssp             HTTSEEEEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHH
T ss_pred             cCCceEEEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            344566778999888999999998   3221   3569999999999999994499999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEEC
Q psy12579         99 LKQAQRSVKLVVRYT  113 (138)
Q Consensus        99 l~~~~~~v~l~v~r~  113 (138)
                      ++..+..+.|+|.|+
T Consensus       156 l~~~g~~v~L~V~R~  170 (170)
T 3egg_C          156 LRNTKGRVRFMIGRE  170 (170)
T ss_dssp             HHHCCSEEEEEEEEC
T ss_pred             HHcCCCEEEEEEEeC
Confidence            999999999999884

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.64  E-value=3.7e-15  Score=94.60  Aligned_cols=88  Identities=36%  Similarity=0.516  Sum_probs=77.5

Q ss_pred             CCCcEEEEEecCC-CCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         27 HAHPRVVELPKTD-EGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        27 ~~~~~~v~l~~~~-~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ...++.|.|.+.. .+|||++.++.+.. .+++|..|.++++|+++|.|++||+|++|||..+.++++.++..+++..+.
T Consensus        13 ~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~   92 (117)
T 1v62_A           13 ASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISE   92 (117)
T ss_dssp             SSSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSS
T ss_pred             CCCcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            4578899999977 79999999875433 349999999999999994499999999999999999999999999998889


Q ss_pred             eEEEEEEECC
Q psy12579        105 SVKLVVRYTP  114 (138)
Q Consensus       105 ~v~l~v~r~~  114 (138)
                      .+.|+|.|..
T Consensus        93 ~v~l~v~r~~  102 (117)
T 1v62_A           93 KVRLEILPVP  102 (117)
T ss_dssp             EEEEEECCBT
T ss_pred             eEEEEEEECC
Confidence            9999998875

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.64  E-value=3.2e-15  Score=93.33  Aligned_cols=81  Identities=40%  Similarity=0.676  Sum_probs=69.2

Q ss_pred             EecCCCCcCeEEeccCCCC-----CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579         35 LPKTDEGLGFNVMGGKEQN-----SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV  109 (138)
Q Consensus        35 l~~~~~~~G~~l~~~~~~~-----~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~  109 (138)
                      +..+..+|||++.+|.+..     .+++|..|.++|||+++|.|+.||+|++|||..+.++++.++..+++..+..+.|+
T Consensus         8 ~~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~   87 (106)
T 4amh_A            8 VPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLK   87 (106)
T ss_dssp             ----CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEE
T ss_pred             CCCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Confidence            3446689999999987543     37999999999999999339999999999999999999999999999998999999


Q ss_pred             EEECCc
Q psy12579        110 VRYTPK  115 (138)
Q Consensus       110 v~r~~~  115 (138)
                      |.|+..
T Consensus        88 v~R~~~   93 (106)
T 4amh_A           88 VAKPGS   93 (106)
T ss_dssp             EECCSS
T ss_pred             EEeCCC
Confidence            999764

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.64  E-value=3.9e-15  Score=90.32  Aligned_cols=84  Identities=26%  Similarity=0.443  Sum_probs=73.5

Q ss_pred             cEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579         30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV  109 (138)
Q Consensus        30 ~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~  109 (138)
                      ++.+.+. ++.+|||++.++.+...+++|..|.++|||+++ ||+.||.|++|||.++.++.+.++..+++..+..+.|+
T Consensus         4 ~~~v~~~-~~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   81 (91)
T 2pkt_A            4 TQQIDLQ-GPGPWGFRLVGGKDFEQPLAISRVTPGSKAALA-NLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLT   81 (91)
T ss_dssp             EEEEEEE-SSSCCSEEEEEEGGGTEEEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             cEEEEEC-CCCCCCEEEEccCCCCCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            4556665 457899999987665568999999999999999 89999999999999999999999999998888999999


Q ss_pred             EEECCc
Q psy12579        110 VRYTPK  115 (138)
Q Consensus       110 v~r~~~  115 (138)
                      +.|+..
T Consensus        82 v~R~g~   87 (91)
T 2pkt_A           82 VARSEH   87 (91)
T ss_dssp             EEEECC
T ss_pred             EEECCc
Confidence            998764

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.64  E-value=4e-15  Score=93.00  Aligned_cols=90  Identities=30%  Similarity=0.494  Sum_probs=76.4

Q ss_pred             CCCCCcEEEEEe--cCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHH
Q psy12579         25 EGHAHPRVVELP--KTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAV   96 (138)
Q Consensus        25 ~~~~~~~~v~l~--~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~   96 (138)
                      +...+...+.+.  +...+|||++.++.+.     ..+++|..|.+++||+++ | |++||+|++|||.++.++++.++.
T Consensus         8 ~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~   86 (108)
T 2jre_A            8 ASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALD-GRIEPNDKILRVDDVNVQGMAQSDVV   86 (108)
T ss_dssp             SSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHH-SSCCSSEEEEEETTEECTTSCHHHHH
T ss_pred             ccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHH
Confidence            344566778884  5568899999886532     348999999999999999 7 999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEECCc
Q psy12579         97 ELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        97 ~~l~~~~~~v~l~v~r~~~  115 (138)
                      .+++..+..+.|+|.|+..
T Consensus        87 ~~l~~~g~~v~l~v~R~~~  105 (108)
T 2jre_A           87 EVLRNAGNPVRLLLIRRLP  105 (108)
T ss_dssp             HHHHHHCSEEEEEEEECCC
T ss_pred             HHHHcCCCeEEEEEEeCCc
Confidence            9998888899999998764

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.64  E-value=3.7e-15  Score=93.48  Aligned_cols=88  Identities=35%  Similarity=0.598  Sum_probs=77.0

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCC------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKE------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      .+...+.+.+...+|||++.++.+      ...+++|..|.+++||+++ ||+.||+|++|||..+.+..+.++...++.
T Consensus        14 ~~~~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~~   92 (110)
T 1x5q_A           14 EEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRG   92 (110)
T ss_dssp             CEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             cceEEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHhhC
Confidence            466678888888999999997653      2467999999999999999 899999999999999999999988888888


Q ss_pred             CCCeEEEEEEECCch
Q psy12579        102 AQRSVKLVVRYTPKV  116 (138)
Q Consensus       102 ~~~~v~l~v~r~~~~  116 (138)
                      .+..+.|+|.|+...
T Consensus        93 ~g~~v~l~v~R~g~~  107 (110)
T 1x5q_A           93 AGTAVQMRVWRESGP  107 (110)
T ss_dssp             CCSEEEEEEEECSSC
T ss_pred             CCCeEEEEEEECCcc
Confidence            889999999998643

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.64  E-value=7.5e-15  Score=90.00  Aligned_cols=86  Identities=36%  Similarity=0.623  Sum_probs=75.2

Q ss_pred             CcEEEEEecCCCCcCeEEeccCC------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKE------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      +...+.+.+...+|||++.++.+      ...+++|..|.+++||+++ ||+.||.|++|||.++.++.+.++...++..
T Consensus         3 ~~~~v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~   81 (97)
T 2w4f_A            3 EELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGA   81 (97)
T ss_dssp             CEEEEEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             eEEEEEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence            44668888888899999997654      2467999999999999999 8999999999999999999988888888788


Q ss_pred             CCeEEEEEEECCc
Q psy12579        103 QRSVKLVVRYTPK  115 (138)
Q Consensus       103 ~~~v~l~v~r~~~  115 (138)
                      +..+.|++.|+..
T Consensus        82 g~~v~l~v~R~g~   94 (97)
T 2w4f_A           82 GTAVQMRVWRERE   94 (97)
T ss_dssp             CSEEEEEEECCSS
T ss_pred             CCeEEEEEEeCCc
Confidence            9999999999864

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.64  E-value=7.8e-15  Score=92.62  Aligned_cols=90  Identities=36%  Similarity=0.526  Sum_probs=76.8

Q ss_pred             CCCCCcEEEEEecC-CCCcCeEEeccCCC-------CCCeEEEEEcCCChhhh-cCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579         25 EGHAHPRVVELPKT-DEGLGFNVMGGKEQ-------NSPIYISRIIPGGVADR-HGGLKRGDQLLSVNGVSVEGEDHGKA   95 (138)
Q Consensus        25 ~~~~~~~~v~l~~~-~~~~G~~l~~~~~~-------~~~v~V~~v~~gs~a~~-~~gl~~gD~i~~ing~~v~~~~~~~~   95 (138)
                      +...+++.|.+.+. ..+|||+|.++.+.       ..+++|..|.+++||++ + +|+.||+|++|||..+.++++.++
T Consensus         6 ~~~~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~a-gL~~GD~I~~ing~~v~~~~~~~~   84 (114)
T 1uew_A            6 SGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCA-KLKVGDRILAVNGQSIINMPHADI   84 (114)
T ss_dssp             SCCCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGS-SCCTTCBEEEETTBCTTTSCHHHH
T ss_pred             CCcccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhC-CCCCCCEEEEECCEECCCCCHHHH
Confidence            44567889999885 47899999875422       12579999999999999 6 999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEECCc
Q psy12579         96 VELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        96 ~~~l~~~~~~v~l~v~r~~~  115 (138)
                      ..+++..+..+.|+|.|...
T Consensus        85 ~~~l~~~g~~v~l~v~r~~~  104 (114)
T 1uew_A           85 VKLIKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             HHHHHHTTTEEEEEECCCSC
T ss_pred             HHHHHcCCCeEEEEEEeCCc
Confidence            99999888999999988753

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.63  E-value=5.8e-16  Score=97.39  Aligned_cols=89  Identities=34%  Similarity=0.520  Sum_probs=77.6

Q ss_pred             CCCCCcEEEEEecCC-CCcCeEEeccCC---------CCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHH
Q psy12579         25 EGHAHPRVVELPKTD-EGLGFNVMGGKE---------QNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHG   93 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~---------~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~   93 (138)
                      +.++..++|.|.++. .+|||++.++.+         ...+++|..|.++++|+++ | |+.||+|++|||..+.++++.
T Consensus         5 p~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~vng~~v~~~~~~   83 (111)
T 1uju_A            5 SSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRD-GRLRVGLRLLEVNQQSLLGLTHG   83 (111)
T ss_dssp             CCSCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHH-SSCCTTCBCCBBSSCBCTTSCHH
T ss_pred             CCCCccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHH
Confidence            445667789998876 899999998763         2457999999999999999 6 999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEECC
Q psy12579         94 KAVELLKQAQRSVKLVVRYTP  114 (138)
Q Consensus        94 ~~~~~l~~~~~~v~l~v~r~~  114 (138)
                      ++..+++..+..+.|+|.|..
T Consensus        84 ~~~~~l~~~g~~v~l~v~r~~  104 (111)
T 1uju_A           84 EAVQLLRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HHHHHHSSCSSEEEECCCCCC
T ss_pred             HHHHHHHcCCCeEEEEEEECC
Confidence            999999988889999988764

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.63  E-value=1.1e-15  Score=109.27  Aligned_cols=89  Identities=40%  Similarity=0.633  Sum_probs=80.8

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      ..+++|+|.+.. .+|||+|.++.+...+++|..|.+++||+++++|+.||+|++|||.++.++++.++..+++..+..+
T Consensus        76 ~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V  155 (263)
T 1z87_A           76 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV  155 (263)
T ss_dssp             CSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCC
T ss_pred             CccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeE
Confidence            468999999975 8999999998776678999999999999995599999999999999999999999999999999999


Q ss_pred             EEEEEECCch
Q psy12579        107 KLVVRYTPKV  116 (138)
Q Consensus       107 ~l~v~r~~~~  116 (138)
                      .|+|.|.+..
T Consensus       156 ~L~V~R~~~~  165 (263)
T 1z87_A          156 VLEVKYMKEV  165 (263)
T ss_dssp             CEEEECCSSS
T ss_pred             EEEEEeCccc
Confidence            9999997654

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.63  E-value=1.1e-14  Score=88.90  Aligned_cols=82  Identities=34%  Similarity=0.579  Sum_probs=71.5

Q ss_pred             cEEEEEecCCCCcCeEEeccCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         30 PRVVELPKTDEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        30 ~~~v~l~~~~~~~G~~l~~~~~--------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      ..+|++.++. +|||++.++.+        ...+++|..|.+++||++  +|+.||+|++|||.++.++++.++..+++.
T Consensus         4 ~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~~~   80 (95)
T 1mfg_A            4 EIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKT   80 (95)
T ss_dssp             EEEEEEECSS-SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT--TCCTTCEEEEETTEECTTCBHHHHHHHHHH
T ss_pred             EEEEEECCCC-CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh--CCCCCCEEEEECCEEcCCCCHHHHHHHhhc
Confidence            3567777665 89999998653        245899999999999998  999999999999999999999999999988


Q ss_pred             CCCeEEEEEEECC
Q psy12579        102 AQRSVKLVVRYTP  114 (138)
Q Consensus       102 ~~~~v~l~v~r~~  114 (138)
                      .+..+.|+|.|++
T Consensus        81 ~~~~v~l~v~R~~   93 (95)
T 1mfg_A           81 FQNTVELIIVREV   93 (95)
T ss_dssp             CCSEEEEEEEEEC
T ss_pred             CCCeEEEEEEeCC
Confidence            8999999998875

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=96.14  Aligned_cols=91  Identities=34%  Similarity=0.567  Sum_probs=79.2

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      ..+.+.+.+.+.++..+|||++.++.+.. .+++|..|.++++|+++ | |+.||+|++|||..+.++++.++..+++..
T Consensus        13 ~~~~~~~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~   91 (116)
T 2dm8_A           13 IVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARD-GRLWAGDQILEVNGVDLRNSSHEEAITALRQT   91 (116)
T ss_dssp             CCTTSCEEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCSSSHHHHH-TCCCTTCEEEEETTEECSSSCHHHHHHHHHTC
T ss_pred             cCCCCEEEEEEEECCCcccEEEeCCCCCCcCCEEEEEECCCChHHhC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            34456688999998899999999865433 58999999999999999 6 999999999999999999999999999888


Q ss_pred             CCeEEEEEEECCch
Q psy12579        103 QRSVKLVVRYTPKV  116 (138)
Q Consensus       103 ~~~v~l~v~r~~~~  116 (138)
                      +..+.|+|.|+...
T Consensus        92 ~~~v~l~v~R~~~~  105 (116)
T 2dm8_A           92 PQKVRLVVYRDEAH  105 (116)
T ss_dssp             CSEEEEEEECCSSC
T ss_pred             CCeEEEEEEeCCcc
Confidence            88999999987643

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.63  E-value=3.5e-15  Score=94.13  Aligned_cols=84  Identities=29%  Similarity=0.573  Sum_probs=75.2

Q ss_pred             CCcEEEEEecCCC-CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         28 AHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGL-KRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~~-~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl-~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      ...++|++.+... +|||.+...   ..+++|..|.+++||+++ || +.||+|++|||..+.++++.++..+++..+..
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~~~---~~gv~V~~V~~~spA~~a-Gll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   99 (113)
T 1va8_A           24 ETVKIVRIEKARDIPLGATVRNE---MDSVIISRIVKGGAAEKS-GLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGT   99 (113)
T ss_dssp             EECEEEEEEECTTCCCCEEEEEC---SSSEEEEEECTTSHHHHH-TCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEE
T ss_pred             CceEEEEEEeCCCCceeEEEEeC---CCCEEEEEeCCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            4678899999886 999999875   457999999999999999 77 99999999999999999999999999988888


Q ss_pred             EEEEEEECCc
Q psy12579        106 VKLVVRYTPK  115 (138)
Q Consensus       106 v~l~v~r~~~  115 (138)
                      +.|+|.|...
T Consensus       100 v~l~v~r~~~  109 (113)
T 1va8_A          100 LTFVLIPSSG  109 (113)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEECCc
Confidence            9999988754

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.63  E-value=6.5e-16  Score=95.78  Aligned_cols=90  Identities=31%  Similarity=0.583  Sum_probs=78.7

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      ....+...+.+.+...+|||++.++.+...+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+++..+
T Consensus         7 ~~~~~~~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g   85 (103)
T 1wfv_A            7 GQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRN-GRMRVGDQIIEINGESTRDMTHARAIELIKSGG   85 (103)
T ss_dssp             CCCSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHH-CSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC
T ss_pred             ccCceEEEEEEecCCCcCCEEEeccccCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4445677788888888999999987655557999999999999999 7 9999999999999999999999999998888


Q ss_pred             CeEEEEEEECCc
Q psy12579        104 RSVKLVVRYTPK  115 (138)
Q Consensus       104 ~~v~l~v~r~~~  115 (138)
                      ..+.|+|.|+..
T Consensus        86 ~~v~l~v~R~~~   97 (103)
T 1wfv_A           86 RRVRLLLKRGTG   97 (103)
T ss_dssp             SEECEEEECTTC
T ss_pred             CeEEEEEEECCC
Confidence            999999998754

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.62  E-value=4.4e-15  Score=95.67  Aligned_cols=90  Identities=31%  Similarity=0.539  Sum_probs=77.9

Q ss_pred             CCCCCcEEEEEecC--CCCcCeEEeccCC---------CCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCH
Q psy12579         25 EGHAHPRVVELPKT--DEGLGFNVMGGKE---------QNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDH   92 (138)
Q Consensus        25 ~~~~~~~~v~l~~~--~~~~G~~l~~~~~---------~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~   92 (138)
                      ..+..++.|++.+.  ..+|||++.++.+         ...+++|..|.++|+|+++ | |+.||+|++|||.++.++++
T Consensus        25 ~~~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~vng~~v~~~~~  103 (128)
T 1nf3_C           25 ILPETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQST-GLLAVNDEVLEVNGIEVSGKSL  103 (128)
T ss_dssp             TSCTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHH-TCCCTTCEEEEETTEESTTCCH
T ss_pred             cCCCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHC-CCCCCCCEEEEECCEECCCCCH
Confidence            44567889999997  4789999987642         1246999999999999999 6 99999999999999999999


Q ss_pred             HHHHHHHHhCCCeEEEEEEECCc
Q psy12579         93 GKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        93 ~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      .++..+++..+..+.|+|.|...
T Consensus       104 ~~~~~~l~~~~~~v~l~v~r~~~  126 (128)
T 1nf3_C          104 DQVTDMMIANSRNLIITVRPANQ  126 (128)
T ss_dssp             HHHHHHHHHTTTSEEEEEECCCC
T ss_pred             HHHHHHHHcCCCeEEEEEEECCc
Confidence            99999999888899999998753

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1e-14  Score=89.98  Aligned_cols=89  Identities=34%  Similarity=0.560  Sum_probs=76.4

Q ss_pred             CCCCCcEEEEEecCCC-CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         25 EGHAHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~-~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      .....+++|+|.+... .|||++....+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++...++. +
T Consensus         6 ~~~~~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~   83 (100)
T 2eeh_A            6 SGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERA-GLCVGDKITEVNGLSLESTTMGSAVKVLTS-S   83 (100)
T ss_dssp             SCCCEECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHH-TCCSSCEEEEETTEECSSCCHHHHHHHHHS-C
T ss_pred             CCCCeEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHhhcC-C
Confidence            3345677789988775 599999987655568999999999999999 899999999999999999888888888876 7


Q ss_pred             CeEEEEEEECCc
Q psy12579        104 RSVKLVVRYTPK  115 (138)
Q Consensus       104 ~~v~l~v~r~~~  115 (138)
                      ..+.|++.|+..
T Consensus        84 ~~v~l~v~R~g~   95 (100)
T 2eeh_A           84 SRLHMMVRRMGS   95 (100)
T ss_dssp             SSEEEEEEECSC
T ss_pred             CEEEEEEEECCc
Confidence            899999999864

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.62  E-value=1.2e-14  Score=91.10  Aligned_cols=86  Identities=34%  Similarity=0.520  Sum_probs=73.9

Q ss_pred             CCcEEEEEec-CCCCcCeEEeccCCC------------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHH
Q psy12579         28 AHPRVVELPK-TDEGLGFNVMGGKEQ------------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGK   94 (138)
Q Consensus        28 ~~~~~v~l~~-~~~~~G~~l~~~~~~------------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~   94 (138)
                      .+++.+.+.+ ...+|||++.++...            ..+++|..|.++++|+++ ||+.||+|++|||..+.++++.+
T Consensus         6 ~~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~   84 (109)
T 1q3o_A            6 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRMGDFLIEVNGQNVVKVGHRQ   84 (109)
T ss_dssp             EEEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHH
T ss_pred             cCcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHH
Confidence            3568899975 457999999987542            126899999999999999 89999999999999999999999


Q ss_pred             HHHHHHhCCCeEEEEEEECC
Q psy12579         95 AVELLKQAQRSVKLVVRYTP  114 (138)
Q Consensus        95 ~~~~l~~~~~~v~l~v~r~~  114 (138)
                      +..+++..+..+.|+|.+..
T Consensus        85 ~~~~l~~~~~~v~l~v~~~~  104 (109)
T 1q3o_A           85 VVNMIRQGGNTLMVKVVMVT  104 (109)
T ss_dssp             HHHHHHHTTTEEEEEEEEEE
T ss_pred             HHHHHHhCCCEEEEEEEECC
Confidence            99999988888999887754

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.62  E-value=6.5e-15  Score=90.51  Aligned_cols=88  Identities=30%  Similarity=0.516  Sum_probs=74.7

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      .....++.+.+.++..+|||++.++.+ ..+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..+++....
T Consensus         5 ~~~~~~~~~~l~~~~~g~G~~~~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   82 (98)
T 2jxo_A            5 FTMLRPRLCTMKKGPSGYGFNLHSDKS-KPGQFIRSVDPDSPAEAS-GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD   82 (98)
T ss_dssp             SCSSCCEEEEEECTTTCCCEEEECCCS-SSCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTTTT
T ss_pred             CccCCcEEEEEEeCCCcccEEEEecCC-CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            344678999999998999999987543 347999999999999999 899999999999999999889999999988754


Q ss_pred             -eEEEEEEECC
Q psy12579        105 -SVKLVVRYTP  114 (138)
Q Consensus       105 -~v~l~v~r~~  114 (138)
                       .+.+++.|++
T Consensus        83 ~~~~l~v~R~g   93 (98)
T 2jxo_A           83 ETKLLVVDRET   93 (98)
T ss_dssp             EEEEEECCHHH
T ss_pred             cEEEEEEECCc
Confidence             4557777654

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.62  E-value=4.1e-15  Score=94.34  Aligned_cols=85  Identities=33%  Similarity=0.538  Sum_probs=75.5

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCC------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK  100 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~  100 (138)
                      .+.+.|.|.++. .+|||++.++.+.      ..+++|..|.++++|+ + +|+.||+|++|||.++.++++.++..+++
T Consensus        13 ~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~-gL~~GD~I~~Vng~~v~~~~~~~~~~~l~   90 (117)
T 2csj_A           13 WEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-G-LLQENDRVVMVNGTPMEDVLHSFAVQQLR   90 (117)
T ss_dssp             EEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-H-HBCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred             ceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-c-cCCCCCEEEEECCEECCCcCHHHHHHHHh
Confidence            567889999886 8999999987652      4579999999999997 5 99999999999999999999999999999


Q ss_pred             hCCCeEEEEEEECC
Q psy12579        101 QAQRSVKLVVRYTP  114 (138)
Q Consensus       101 ~~~~~v~l~v~r~~  114 (138)
                      ..+..+.|+|.|..
T Consensus        91 ~~~~~v~l~v~R~~  104 (117)
T 2csj_A           91 KSGKIAAIVVKRPR  104 (117)
T ss_dssp             HSCSEEEEEEEEEE
T ss_pred             cCCCeEEEEEEECC
Confidence            99999999998864

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.62  E-value=3.4e-15  Score=94.07  Aligned_cols=89  Identities=28%  Similarity=0.514  Sum_probs=76.8

Q ss_pred             CCcEEEEEecCCCCcCeEEec---cCC---CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         28 AHPRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~---~~~---~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      .+...|++.++..+|||++.+   +.+   ...+++|..|.++|||+++|.|+.||.|++|||.++.++++.++..+++.
T Consensus         3 ~~~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   82 (113)
T 2g5m_B            3 MELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN   82 (113)
T ss_dssp             CEEEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH
T ss_pred             eEEEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            355778888888999999988   322   24579999999999999993399999999999999999999999999999


Q ss_pred             CCCeEEEEEEECCch
Q psy12579        102 AQRSVKLVVRYTPKV  116 (138)
Q Consensus       102 ~~~~v~l~v~r~~~~  116 (138)
                      .+..+.|++.|++..
T Consensus        83 ~g~~v~l~v~R~~~~   97 (113)
T 2g5m_B           83 TKGRVRFMIGRERPG   97 (113)
T ss_dssp             SCSSCEEEEEECCCC
T ss_pred             CCCeEEEEEEeCCCC
Confidence            999999999998653

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.62  E-value=2.1e-15  Score=93.64  Aligned_cols=85  Identities=29%  Similarity=0.482  Sum_probs=75.0

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      +..+|.+. ++.+|||++.++.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++..+..+.|
T Consensus         5 ~~~~v~l~-~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   82 (103)
T 1wf7_A            5 SSGSVSLV-GPAPWGFRLQGGKDFNMPLTISSLKDGGKASQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNM   82 (103)
T ss_dssp             CCEEEEEE-SSSCCSCCEEEETTTTEEEEECCCCTTCHHHHT-TCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEE
T ss_pred             CEEEEEEe-CCCccCEEEeccccCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            45667777 568899999988766667899999999999999 8999999999999999999999999999888889999


Q ss_pred             EEEECCc
Q psy12579        109 VVRYTPK  115 (138)
Q Consensus       109 ~v~r~~~  115 (138)
                      +|.|+..
T Consensus        83 ~v~R~g~   89 (103)
T 1wf7_A           83 TLQRASA   89 (103)
T ss_dssp             EECCCSC
T ss_pred             EEEeCCC
Confidence            9988764

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.62  E-value=1e-14  Score=99.97  Aligned_cols=91  Identities=32%  Similarity=0.569  Sum_probs=80.4

Q ss_pred             ccCCCCCcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         23 ASEGHAHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        23 ~~~~~~~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      ........+.|.+.+. +.+|||++.++.+...+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..+++.
T Consensus        78 ~~~~~~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~a-GL~~GD~Il~vng~~v~~~~~~~~~~~l~~  156 (192)
T 3k1r_A           78 TPRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSV-GLQVGDEIVRINGYSISSCTHEEVINLIRT  156 (192)
T ss_dssp             SCCCCSSCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHT-TCCTTEEEEEETTEECTTCCHHHHHHHHTS
T ss_pred             CCCCCCceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHcC
Confidence            3444567889999987 57999999987665668999999999999999 799999999999999999999999999988


Q ss_pred             CCCeEEEEEEECCc
Q psy12579        102 AQRSVKLVVRYTPK  115 (138)
Q Consensus       102 ~~~~v~l~v~r~~~  115 (138)
                       +..+.|+|.|.+.
T Consensus       157 -~~~v~l~v~r~g~  169 (192)
T 3k1r_A          157 -EKTVSIKVRHIGL  169 (192)
T ss_dssp             -SSEEEEEEEECCE
T ss_pred             -CCeEEEEEEECCc
Confidence             8999999999864

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.62  E-value=2.2e-14  Score=90.63  Aligned_cols=87  Identities=22%  Similarity=0.391  Sum_probs=74.3

Q ss_pred             CCCCcEEEEEecCCC-CcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         26 GHAHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        26 ~~~~~~~v~l~~~~~-~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      +...+++|++.++.. +|||++.++.+...+++|..|.++|||+++ | |+.||+|++|||.++.+.++.++..+++..+
T Consensus        21 q~~~~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~a-G~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~   99 (114)
T 2gzv_A           21 QSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALD-GTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK   99 (114)
T ss_dssp             -CCCCEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             ccCCCEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            345788999998875 499999987655557999999999999999 7 9999999999999998889999999999888


Q ss_pred             CeEEEEEEEC
Q psy12579        104 RSVKLVVRYT  113 (138)
Q Consensus       104 ~~v~l~v~r~  113 (138)
                      +.+.|++.+.
T Consensus       100 ~~v~l~v~~~  109 (114)
T 2gzv_A          100 GEVTIHYNKL  109 (114)
T ss_dssp             SEEEEEEECC
T ss_pred             CeEEEEEEec
Confidence            8888888654

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.61  E-value=1.7e-14  Score=89.94  Aligned_cols=86  Identities=29%  Similarity=0.536  Sum_probs=75.0

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCC------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK  100 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~  100 (138)
                      .++++|++.++. .+|||++.++.+.      ..+++|..|.+++||+ + +|+.||.|++|||.++.++.+..+...+.
T Consensus         6 ~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-a-gl~~GD~I~~vng~~v~~~~~~~~~~~~~   83 (107)
T 2h2b_A            6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-G-QLQENDRVAMVNGVSMDNVEHAFAVQQLR   83 (107)
T ss_dssp             EEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-T-TBCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             ceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-h-CCCCCCEEEEECCEECCCccHHHHHHHhh
Confidence            467889999985 7999999986642      3589999999999999 6 99999999999999999999888888888


Q ss_pred             hCCCeEEEEEEECCc
Q psy12579        101 QAQRSVKLVVRYTPK  115 (138)
Q Consensus       101 ~~~~~v~l~v~r~~~  115 (138)
                      ..+..+.|++.|+..
T Consensus        84 ~~g~~v~l~v~R~~~   98 (107)
T 2h2b_A           84 KSGKNAKITIRRKKG   98 (107)
T ss_dssp             TCCSEEEEEEEEESC
T ss_pred             CCCCEEEEEEEECCC
Confidence            788999999988753

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.61  E-value=1.1e-14  Score=90.71  Aligned_cols=84  Identities=35%  Similarity=0.524  Sum_probs=74.8

Q ss_pred             cEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         30 PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        30 ~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      ++.+.+.+.. ..|||.+....+ ..+++|..|.++|||+.+ ||+.||.|++|||.++.++++.++..+++..+..+.|
T Consensus         2 ~r~v~l~~~~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l   79 (106)
T 3ngh_A            2 PRESKLSKQEGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKA-GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTL   79 (106)
T ss_dssp             CEEEEEECCTTCCCCCEEECCTT-CCSCEEECCCTTSHHHHT-TCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEE
T ss_pred             CEEEEEEeCCCCeeCEEEEEEeC-CCCEEEEEeCCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEE
Confidence            6889998877 789999987643 457999999999999999 8999999999999999999999999999988999999


Q ss_pred             EEEECCc
Q psy12579        109 VVRYTPK  115 (138)
Q Consensus       109 ~v~r~~~  115 (138)
                      ++.|...
T Consensus        80 ~v~r~~~   86 (106)
T 3ngh_A           80 LVLDGDS   86 (106)
T ss_dssp             EEECHHH
T ss_pred             EEEECCe
Confidence            9998643

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.61  E-value=1e-14  Score=91.54  Aligned_cols=82  Identities=23%  Similarity=0.374  Sum_probs=72.7

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-E
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-V  106 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~-v  106 (138)
                      ..+|+|.|.+++.+|||++.+    ..+++|..|.+++||+++ ||+.||.|++|||.++.++++.++..+++..++. +
T Consensus        22 ~~~r~v~l~k~~~~~G~~l~~----~~~v~V~~V~~gspA~~A-GL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v   96 (109)
T 2vsv_A           22 SMPRSIRFTAEEGDLGFTLRG----NAPVQVHFLDPYCSASVA-GAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEI   96 (109)
T ss_dssp             HSCEEEEECCGGGCCCEEEES----SSSCEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCE
T ss_pred             CCCEEEEEEeCCCceeEEEeC----CCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeE
Confidence            367899999988999999976    356899999999999999 9999999999999999998999999999887664 8


Q ss_pred             EEEEEECC
Q psy12579        107 KLVVRYTP  114 (138)
Q Consensus       107 ~l~v~r~~  114 (138)
                      .|+|.+..
T Consensus        97 ~l~V~~~~  104 (109)
T 2vsv_A           97 EMKVVSLL  104 (109)
T ss_dssp             EEEEESCC
T ss_pred             EEEEEECC
Confidence            99987764

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.61  E-value=2.2e-14  Score=90.06  Aligned_cols=90  Identities=34%  Similarity=0.619  Sum_probs=77.0

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLK  100 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~  100 (138)
                      ....+...+.+.++..+|||++.+..+.   ..+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+++
T Consensus         7 ~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~a-G~l~~GD~I~~ing~~v~~~~~~~~~~~l~   85 (111)
T 2koj_A            7 KKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQD-GRLKAGDRLIEVNGVDLAGKSQEEVVSLLR   85 (111)
T ss_dssp             SSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHH-CSSCTTCEEEEETTEECTTSCHHHHHHHHH
T ss_pred             cccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3445667788888889999999876432   257999999999999999 6 9999999999999999999999999998


Q ss_pred             hC--CCeEEEEEEECCc
Q psy12579        101 QA--QRSVKLVVRYTPK  115 (138)
Q Consensus       101 ~~--~~~v~l~v~r~~~  115 (138)
                      ..  +..+.|+|.|+..
T Consensus        86 ~~~~g~~v~l~v~R~~~  102 (111)
T 2koj_A           86 STKMEGTVSLLVFRQEE  102 (111)
T ss_dssp             HCCCSSEEEEEEEECCC
T ss_pred             hCCCCCeEEEEEEeCCC
Confidence            75  7889999998864

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.61  E-value=1e-14  Score=92.74  Aligned_cols=85  Identities=29%  Similarity=0.545  Sum_probs=72.2

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC----C
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA----Q  103 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~----~  103 (138)
                      ..+.+.+.+. .+|||++.++.+.. .+++|..|.++|||+++|+|+.||+|++|||..+.++++.++..+++..    +
T Consensus        18 ~~~~~~~~~~-~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g   96 (118)
T 1v6b_A           18 DVRLLRIKKE-GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGG   96 (118)
T ss_dssp             CEEEEEEESC-SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTC
T ss_pred             eEEEEEECCC-CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCC
Confidence            3456666655 48999999876543 3499999999999999999999999999999999999999999988764    7


Q ss_pred             CeEEEEEEECC
Q psy12579        104 RSVKLVVRYTP  114 (138)
Q Consensus       104 ~~v~l~v~r~~  114 (138)
                      ..+.|+|.|.+
T Consensus        97 ~~v~l~v~r~~  107 (118)
T 1v6b_A           97 DWIDLVVAVCP  107 (118)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEeCC
Confidence            89999999864

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.60  E-value=1.4e-14  Score=98.87  Aligned_cols=88  Identities=38%  Similarity=0.623  Sum_probs=78.5

Q ss_pred             CCCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         27 HAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        27 ~~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      ..+.+.|++.+++.+|||++.++.+.     ..+++|..|.++|||+++|.|+.||+|++|||.++.++++.++..+++.
T Consensus         3 ~~~~~~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   82 (196)
T 3gsl_A            3 SMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE   82 (196)
T ss_dssp             CEEEEEEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             CcEEEEEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            45678899999999999999998654     4589999999999999993399999999999999999999999999999


Q ss_pred             CCCeEEEEEEECC
Q psy12579        102 AQRSVKLVVRYTP  114 (138)
Q Consensus       102 ~~~~v~l~v~r~~  114 (138)
                      .+..+.+++.|..
T Consensus        83 ~g~~v~l~v~r~~   95 (196)
T 3gsl_A           83 AGSIVRLYVMRRK   95 (196)
T ss_dssp             SCSEEEEEEEEEC
T ss_pred             CCCcEEEEEEecC
Confidence            9999999998764

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.60  E-value=1.6e-14  Score=87.04  Aligned_cols=82  Identities=24%  Similarity=0.385  Sum_probs=69.1

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeE
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSV  106 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v  106 (138)
                      +.++|++.++..+|||++.+..+ ..+++|..+ +++||+ + +|+.||.|++|||.++.++++.++..+++.  .+..+
T Consensus         3 ~~~~v~l~k~~~g~G~~~~~~~~-~~~~~v~~v-~~spA~-a-Gl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v   78 (88)
T 3bpu_A            3 ELITVHIVKGPMGFGFTIADSPG-GGGQRVKQI-VDSPRS-R-GLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEV   78 (88)
T ss_dssp             EEEEEEEECBTTBSSCEEEECTT-SSSEEEEEC-CC--CC-T-TCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEE
T ss_pred             cEEEEEEEcCCCceeEEEEecCC-CCcEEEEEe-cCChhH-h-CCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEE
Confidence            56789999999999999987533 357888887 999999 7 999999999999999999999999999885  47889


Q ss_pred             EEEEEECC
Q psy12579        107 KLVVRYTP  114 (138)
Q Consensus       107 ~l~v~r~~  114 (138)
                      .|++.|+.
T Consensus        79 ~l~v~R~g   86 (88)
T 3bpu_A           79 TLLVQRQT   86 (88)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEeCC
Confidence            99998865

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=4.6e-15  Score=91.62  Aligned_cols=90  Identities=29%  Similarity=0.468  Sum_probs=75.1

Q ss_pred             CCCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         25 EGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      +...+.+.+.+.... .+|||++.++.+...+++|..|.+++||+++++|++||+|++||+.++.++ +.++..+++..+
T Consensus         5 ~~~~~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~   83 (100)
T 2edp_A            5 SSGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSF   83 (100)
T ss_dssp             CCCCCCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCC
T ss_pred             CCCCCcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCC
Confidence            344555666665543 689999998766556789999999999999989999999999999999886 788888888888


Q ss_pred             CeEEEEEEECCc
Q psy12579        104 RSVKLVVRYTPK  115 (138)
Q Consensus       104 ~~v~l~v~r~~~  115 (138)
                      ..+.|+|.|+..
T Consensus        84 ~~v~l~v~R~~~   95 (100)
T 2edp_A           84 RILKLIVRRRNS   95 (100)
T ss_dssp             SSCEEEEEECCC
T ss_pred             CeEEEEEEeCCC
Confidence            899999999764

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.60  E-value=1.8e-14  Score=88.60  Aligned_cols=84  Identities=24%  Similarity=0.439  Sum_probs=71.4

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      .-++.|.+.|.. .+|||++....  ..+++|..|.++|||+++|.|++||.|++|||.++.++++.++..+++..+..+
T Consensus        11 ~~~~~v~l~K~~~~~lG~~l~~~~--~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v   88 (97)
T 2ejy_A           11 HMVRLIQFEKVTEEPMGICLKLNE--KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMI   88 (97)
T ss_dssp             --CEEEEEEECSSSCCSEEEEECT--TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEE
T ss_pred             CccEEEEEEeCCCCCeeEEEEeCC--CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            457889998855 68999998643  357999999999999999339999999999999999888999999999888888


Q ss_pred             EEEEEEC
Q psy12579        107 KLVVRYT  113 (138)
Q Consensus       107 ~l~v~r~  113 (138)
                      .|+|.+.
T Consensus        89 ~L~V~~~   95 (97)
T 2ejy_A           89 SLKVIPN   95 (97)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            8888754

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1e-15  Score=98.36  Aligned_cols=90  Identities=27%  Similarity=0.462  Sum_probs=77.7

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCC----------------------------CCCCeEEEEEcCCChhhhcCCCCCC
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKE----------------------------QNSPIYISRIIPGGVADRHGGLKRG   76 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~----------------------------~~~~v~V~~v~~gs~a~~~~gl~~g   76 (138)
                      ..++.+++|+|.++..+|||++.+...                            ...+++|..|.+++||+++ ||+.|
T Consensus         4 ~~~~~~r~v~l~r~~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~a-GL~~G   82 (126)
T 2yuy_A            4 GSSGGPKTVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEA-GLCTG   82 (126)
T ss_dssp             SCSSSCCCEEEECCSSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHH-TCCSS
T ss_pred             CCCCCCEEEEEEECCCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHc-CCCCC
Confidence            345788899999999999999975211                            1246899999999999999 89999


Q ss_pred             CEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579         77 DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        77 D~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      |+|++|||.++.++++.++..+++..+..+.|+|.|...
T Consensus        83 D~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  121 (126)
T 2yuy_A           83 DRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDS  121 (126)
T ss_dssp             CCCCEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCCC
T ss_pred             CEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            999999999999999999999999888999999988753

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.60  E-value=2.9e-14  Score=89.69  Aligned_cols=82  Identities=23%  Similarity=0.291  Sum_probs=70.5

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~  105 (138)
                      .+.++|+|.++..+|||+|.++   ..+.+|..+.+  ++..+ +|++||.|++|||.++.+++|.++..+++..  +..
T Consensus        11 ~~~~~V~L~Kg~~G~GFsI~~~---~~g~~V~~I~~--~~~~a-GL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~   84 (113)
T 3soe_A           11 GLLVTIPLIKGPKGFGFAIADS---PTGQKVKMILD--SQWCQ-GLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGAD   84 (113)
T ss_dssp             CEEEEEEEECBTTBSSEEEEEE---TTEEEEEEESC--GGGST-TCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCE
T ss_pred             CCEEEEEEEECCCcccEEEeCC---CCCcEEEEecC--hHHhC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence            4678899999999999999754   34577889887  45555 9999999999999999999999999999985  679


Q ss_pred             EEEEEEECCc
Q psy12579        106 VKLVVRYTPK  115 (138)
Q Consensus       106 v~l~v~r~~~  115 (138)
                      +.|+|.|...
T Consensus        85 v~L~V~R~g~   94 (113)
T 3soe_A           85 VPLLILRGGP   94 (113)
T ss_dssp             EEEEEEESSC
T ss_pred             EEEEEEECCc
Confidence            9999999864

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.60  E-value=1e-14  Score=89.78  Aligned_cols=83  Identities=23%  Similarity=0.305  Sum_probs=71.2

Q ss_pred             EEEEecCCCCcCeEEeccCCC--C-----CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         32 VVELPKTDEGLGFNVMGGKEQ--N-----SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        32 ~v~l~~~~~~~G~~l~~~~~~--~-----~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ++.+.+++.+|||++......  .     .+++|..|.++|||+++ ||+.||.|++|||.++.++++.++..+++..+.
T Consensus         5 ~v~l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   83 (99)
T 3khf_A            5 PIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEA-GLRAGDLITHINGESVLGLVHMDVVELLLKSGN   83 (99)
T ss_dssp             CEEEEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             CEEEEeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            477888889999999865321  1     14689999999999999 899999999999999999999999999999999


Q ss_pred             eEEEEEEECCc
Q psy12579        105 SVKLVVRYTPK  115 (138)
Q Consensus       105 ~v~l~v~r~~~  115 (138)
                      .+.|++.|...
T Consensus        84 ~v~l~v~r~~~   94 (99)
T 3khf_A           84 KISLRTTALEN   94 (99)
T ss_dssp             EEEEEEECSCS
T ss_pred             EEEEEEEECCC
Confidence            99999998753

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.59  E-value=4.7e-15  Score=95.43  Aligned_cols=83  Identities=33%  Similarity=0.568  Sum_probs=70.4

Q ss_pred             EEEe-cCCCCcCeEEeccCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-----
Q psy12579         33 VELP-KTDEGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-----  102 (138)
Q Consensus        33 v~l~-~~~~~~G~~l~~~~~~----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-----  102 (138)
                      +.+. +...+|||++.++.+.    ..+++|..|.+++||+++|.|+.||+|++|||..+.++++.++..+++..     
T Consensus        29 v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g  108 (127)
T 1wg6_A           29 IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEG  108 (127)
T ss_dssp             EECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhcccc
Confidence            4444 4568999999986532    24799999999999999944999999999999999999999999999875     


Q ss_pred             --CCeEEEEEEECCc
Q psy12579        103 --QRSVKLVVRYTPK  115 (138)
Q Consensus       103 --~~~v~l~v~r~~~  115 (138)
                        +..+.|+|.|...
T Consensus       109 ~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A          109 NIRGMIQLVILRRSG  123 (127)
T ss_dssp             HHTCEEEEEEEECSC
T ss_pred             CCCCEEEEEEEeCCC
Confidence              7899999998754

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.59  E-value=1.9e-14  Score=92.68  Aligned_cols=89  Identities=28%  Similarity=0.496  Sum_probs=76.7

Q ss_pred             CCCCcEEEEEec-CCCCcCeEEeccCC-----CCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579         26 GHAHPRVVELPK-TDEGLGFNVMGGKE-----QNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVEL   98 (138)
Q Consensus        26 ~~~~~~~v~l~~-~~~~~G~~l~~~~~-----~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~   98 (138)
                      ...+.+.|.+.+ ...+|||++.++.+     ...+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+
T Consensus        12 ~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~I~~vng~~v~~~~~~~~~~~   90 (129)
T 2dmz_A           12 SLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHN-GHIQVNDKIVAVDGVNIQGFANHDVVEV   90 (129)
T ss_dssp             CCEEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHH-TCCCSSCBEEEETTBCCTTCCHHHHHHH
T ss_pred             CCCcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            345677788855 56889999988643     2457999999999999999 6 99999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEECCc
Q psy12579         99 LKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        99 l~~~~~~v~l~v~r~~~  115 (138)
                      ++..+..+.|+|.|+..
T Consensus        91 l~~~~~~v~l~v~R~~~  107 (129)
T 2dmz_A           91 LRNAGQVVHLTLVRRKT  107 (129)
T ss_dssp             HHHCCSSEEEEEEEESS
T ss_pred             HHcCCCeEEEEEEeCCc
Confidence            99888899999998764

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.59  E-value=2.2e-14  Score=88.96  Aligned_cols=84  Identities=33%  Similarity=0.569  Sum_probs=73.6

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL   99 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~--------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l   99 (138)
                      .+..+|++.++. +|||++.++.+        ...+++|..|.++|||++  +|+.||.|++|||.++.++++.++...+
T Consensus        10 ~~~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~--gL~~GD~I~~vng~~v~~~~~~~~~~~~   86 (103)
T 1n7t_A           10 KQEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLL   86 (103)
T ss_dssp             CCCEEEEEECSS-CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS--SCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             cEEEEEEEccCC-CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH--CCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence            455678888765 89999998653        356899999999999998  9999999999999999999999999999


Q ss_pred             HhCCCeEEEEEEECC
Q psy12579        100 KQAQRSVKLVVRYTP  114 (138)
Q Consensus       100 ~~~~~~v~l~v~r~~  114 (138)
                      +..+..+.|++.|+.
T Consensus        87 ~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           87 KTFQNTVELIIVREV  101 (103)
T ss_dssp             HHCCSEEEEEEECCC
T ss_pred             hcCCCeEEEEEEecC
Confidence            988999999998874

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.58  E-value=6.5e-14  Score=86.71  Aligned_cols=87  Identities=30%  Similarity=0.570  Sum_probs=73.6

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCC---------CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHH
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQ---------NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAV   96 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~---------~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~   96 (138)
                      ..|+++.+.+.. ..|||++.+....         ..+++|..|.++|||+++ | |+.||+|++|||.++.++++.++.
T Consensus         3 ldp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~a-G~l~~GD~I~~ing~~v~~~~~~~~~   81 (103)
T 2fcf_A            3 MQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKN-GTLKPGDRIVEVDGMDLRDASHEQAV   81 (103)
T ss_dssp             CSCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CCCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHc-CCCCCCCEEEEECCEECCCCCHHHHH
Confidence            367889998876 6799999875431         247999999999999999 7 999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEECCc
Q psy12579         97 ELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        97 ~~l~~~~~~v~l~v~r~~~  115 (138)
                      .+++..++.+.|++.|...
T Consensus        82 ~~l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           82 EAIRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             HHHHTCCSSEEEEEECCCC
T ss_pred             HHHHhCCCcEEEEEEECCC
Confidence            9999888899999988753

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=5.6e-15  Score=90.61  Aligned_cols=84  Identities=25%  Similarity=0.423  Sum_probs=74.2

Q ss_pred             CCCCCcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         25 EGHAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      ...+.+++|+|.+..  .+|||.+.+    ..+++|..|.+++||+ + +|+.||+|++|||.++.++++.++..+++..
T Consensus         4 g~~~~~~~v~l~~~~~~~~~G~~l~~----~~~~~V~~V~~~spA~-a-gL~~GD~Il~ing~~v~~~~~~~~~~~~~~~   77 (96)
T 2edv_A            4 GSSGVRHTVKIDKDTLLQDYGFHISE----SLPLTVVAVTAGGSAH-G-KLFPGDQILQMNNEPAEDLSWERAVDILREA   77 (96)
T ss_dssp             CSSCEEEEEEECCCSSSCSCSBCCCS----SSSCBCCCBCSSSSST-T-TSCTTCBEEEESSCBSTTCCHHHHHHHHHHC
T ss_pred             CCCCccEEEEEEECCCCCcccEEEec----CCCeEEEEECCCCchh-h-CCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            344667889999877  589999987    4579999999999995 5 9999999999999999999999999999988


Q ss_pred             CCeEEEEEEECC
Q psy12579        103 QRSVKLVVRYTP  114 (138)
Q Consensus       103 ~~~v~l~v~r~~  114 (138)
                      +..+.|+|.|+.
T Consensus        78 g~~v~l~v~R~~   89 (96)
T 2edv_A           78 EDSLSITVVRCT   89 (96)
T ss_dssp             SSCEEEEEEECC
T ss_pred             CCeEEEEEEECC
Confidence            999999999975

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.58  E-value=6.4e-14  Score=85.83  Aligned_cols=86  Identities=24%  Similarity=0.318  Sum_probs=74.1

Q ss_pred             CCCCCcEEEEEec-CCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         25 EGHAHPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        25 ~~~~~~~~v~l~~-~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      +...+..++.+.+ ...+|||++...   ..+++|..|.++|||+++ | |+.||.|++|||.++.++++.++..+++..
T Consensus         4 ~~~~~~~~v~l~~~~~~glG~~~~~~---~~gv~V~~V~~~spA~~a-G~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~   79 (96)
T 2qkv_A            4 RNSLEKFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEID-SKLQRGDIITKFNGDALEGLPFQVSYALFKGA   79 (96)
T ss_dssp             CCCCCCEEEEEECBTTBCCCEEEEEC---SSSEEEEEECTTSCHHHH-HHCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             hHHCceEEEEEEeCCCCCccEEEEeC---CCcEEEEEeCCCChHHhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHhcC
Confidence            3445667788865 557899998762   457999999999999999 7 999999999999999999999999999998


Q ss_pred             CCeEEEEEEECC
Q psy12579        103 QRSVKLVVRYTP  114 (138)
Q Consensus       103 ~~~v~l~v~r~~  114 (138)
                      ++.+.|++.|..
T Consensus        80 ~~~v~l~v~R~~   91 (96)
T 2qkv_A           80 NGKVSMEVTRPK   91 (96)
T ss_dssp             SSEEEEEEECCC
T ss_pred             CCcEEEEEEeCC
Confidence            889999998864

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.58  E-value=3.7e-14  Score=86.70  Aligned_cols=85  Identities=28%  Similarity=0.485  Sum_probs=73.3

Q ss_pred             CcEEEEEecCCCCcCeEEeccCC----CCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKE----QNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~----~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      +..++.+.++..+|||++.+...    ...+++|..|.+++||+.+ | |+.||+|++|||.++.++++.++..+++..+
T Consensus         4 ~~~~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   82 (97)
T 2iwn_A            4 ETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHD-GRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG   82 (97)
T ss_dssp             EEEEEEEECBTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHH-CCCCTTCEEEEETTEECTTSCHHHHHHHHHTCC
T ss_pred             EEEEEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34567788778899999998632    2457999999999999999 7 9999999999999999999999999888888


Q ss_pred             CeEEEEEEECC
Q psy12579        104 RSVKLVVRYTP  114 (138)
Q Consensus       104 ~~v~l~v~r~~  114 (138)
                      ..+.|++.|+.
T Consensus        83 ~~v~l~v~r~g   93 (97)
T 2iwn_A           83 QTVLLTLMRRG   93 (97)
T ss_dssp             SEEEEEEEEEE
T ss_pred             CeEEEEEEeCC
Confidence            89999998864

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.58  E-value=6e-14  Score=89.77  Aligned_cols=90  Identities=29%  Similarity=0.531  Sum_probs=75.5

Q ss_pred             CCCCCcEEEEEecCC-CCcCeEEeccCC---------CCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHH
Q psy12579         25 EGHAHPRVVELPKTD-EGLGFNVMGGKE---------QNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHG   93 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~---------~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~   93 (138)
                      +.+..++++.+.+.. ..|||++.++.+         ...+++|..|.++|||+++ | |++||+|++|||.++.++++.
T Consensus        20 s~~~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~Vng~~v~~~~~~   98 (123)
T 2iwq_A           20 FQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKN-GTLKPGDRIVEVDGMDLRDASHE   98 (123)
T ss_dssp             ---CCCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHH-CCCCTTCEEEEETTEECTTCCHH
T ss_pred             cccCCCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHH
Confidence            444677899998875 679999986542         1257999999999999999 7 999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEEECCc
Q psy12579         94 KAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        94 ~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      ++..+++..+..+.|+|.|.+.
T Consensus        99 ~~~~~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A           99 QAVEAIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             HHHHHHHHCCSSEEEEEECCCC
T ss_pred             HHHHHHHcCCCeEEEEEEECCc
Confidence            9999999888899999988753

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.8e-14  Score=87.53  Aligned_cols=82  Identities=35%  Similarity=0.473  Sum_probs=71.6

Q ss_pred             CCcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         28 AHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        28 ~~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      ..+|.|.|.+. ..+|||++.+.   ..+++|..|.+++||+++++|+.||.|++|||.++ +.++.++..+++..+..+
T Consensus         5 ~~~r~v~l~k~~~~~lG~~i~~~---~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v   80 (91)
T 2e7k_A            5 SSGRMVGIRKTAGEHLGVTFRVE---GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSV   80 (91)
T ss_dssp             CCSCBCCBCCCTTCCCCEEEEES---SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSB
T ss_pred             CCcEEEEEEECCCCcEeEEEEec---CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeE
Confidence            45677888764 47899999873   46799999999999999966999999999999999 889999999999888889


Q ss_pred             EEEEEEC
Q psy12579        107 KLVVRYT  113 (138)
Q Consensus       107 ~l~v~r~  113 (138)
                      .|++.+.
T Consensus        81 ~l~v~~~   87 (91)
T 2e7k_A           81 ILKILSG   87 (91)
T ss_dssp             CEEEECC
T ss_pred             EEEEEEC
Confidence            9988865

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.57  E-value=5.8e-14  Score=96.79  Aligned_cols=95  Identities=22%  Similarity=0.270  Sum_probs=81.7

Q ss_pred             hhccCCCCCcEEEEEecCCCCcCeEEeccCCCC--CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCC--CCHHHHH
Q psy12579         21 FAASEGHAHPRVVELPKTDEGLGFNVMGGKEQN--SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG--EDHGKAV   96 (138)
Q Consensus        21 ~~~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~--~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~--~~~~~~~   96 (138)
                      +.......+...+++.+++.+|||++.++.+..  .+++|..|.++|+|+++|+|+.||+|++|||..+.+  +++.++.
T Consensus        10 ~~~~~~~~~~~~v~~~~~~~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   89 (206)
T 3r0h_A           10 ATAEIKPNKKILIELKVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVH   89 (206)
T ss_dssp             TTCCCCTTSCEEEEEECTTSCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHH
T ss_pred             CcCCCCCCCEEEEEEEeCCCCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHH
Confidence            344455567888999999999999999876543  479999999999999995599999999999999999  8999999


Q ss_pred             HHHHhCCCe-EEEEEEECCc
Q psy12579         97 ELLKQAQRS-VKLVVRYTPK  115 (138)
Q Consensus        97 ~~l~~~~~~-v~l~v~r~~~  115 (138)
                      .+++..+.. +.|+|.|+..
T Consensus        90 ~~~~~~~~~~v~l~v~R~~~  109 (206)
T 3r0h_A           90 QLFHTTYEKAVTLTVFRADP  109 (206)
T ss_dssp             HHHHSCCSSEEEEEEECCSS
T ss_pred             HHHHhcCCCceEEEEEeccc
Confidence            999988877 9999988754

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.57  E-value=2.2e-14  Score=90.88  Aligned_cols=87  Identities=31%  Similarity=0.620  Sum_probs=76.5

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK  107 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~  107 (138)
                      .+++.|.+.+...+|||++.++.  ..+++|..|.+++||+++ ||+.||+|++|||.++.++++.++...+...+..+.
T Consensus        18 ~~~~~v~l~~~~~~lG~~~~~~~--~~gv~V~~V~~~spA~~a-GL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~   94 (117)
T 1uit_A           18 EEPRHVKVQKGSEPLGISIVSGE--KGGIYVSKVTVGSIAHQA-GLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTIT   94 (117)
T ss_dssp             CCCEEEEEECSSCCCCEEEEECT--TSCEEEEEECTTSHHHHH-TCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEE
T ss_pred             CCCEEEEEEeCCCCccEEEEccC--CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            46778999998889999998764  358999999999999999 899999999999999999998888876777788999


Q ss_pred             EEEEECCchH
Q psy12579        108 LVVRYTPKVL  117 (138)
Q Consensus       108 l~v~r~~~~~  117 (138)
                      |+|.|++..+
T Consensus        95 l~v~r~~~~~  104 (117)
T 1uit_A           95 ILAQYNPHVH  104 (117)
T ss_dssp             EEECCCSCCC
T ss_pred             EEEEECCchh
Confidence            9999987654

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.57  E-value=3.9e-14  Score=89.99  Aligned_cols=88  Identities=33%  Similarity=0.616  Sum_probs=73.5

Q ss_pred             CCCcEEEEEecC-CCCcCeEEeccCCC-CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         27 HAHPRVVELPKT-DEGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        27 ~~~~~~v~l~~~-~~~~G~~l~~~~~~-~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      ....+.+.+.+. ..+|||++.++.+. ..+++|..|.+++||+++ | |+.||+|++|||..+.++++.++..+++..+
T Consensus        13 ~~~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~a-G~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~   91 (119)
T 1x6d_A           13 LDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQE-GTIQKGNEVLSINGKSLKGTTHHDALAILRQAR   91 (119)
T ss_dssp             CTTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHH-TSSCTTCBCCEETTEECSSCCHHHHHHHHHHTT
T ss_pred             CCCeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            345667777775 57899999987653 457999999999999999 6 9999999999999999999999999998876


Q ss_pred             Ce-EEEEEEECCc
Q psy12579        104 RS-VKLVVRYTPK  115 (138)
Q Consensus       104 ~~-v~l~v~r~~~  115 (138)
                      .. +.+++.|+..
T Consensus        92 ~~~~~l~v~R~~~  104 (119)
T 1x6d_A           92 EPRQAVIVTRKLT  104 (119)
T ss_dssp             SSSEEEEEEECCC
T ss_pred             CCeEEEEEEcCCC
Confidence            54 5577777753

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.57  E-value=1.2e-14  Score=88.65  Aligned_cols=83  Identities=24%  Similarity=0.483  Sum_probs=71.5

Q ss_pred             EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579         31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV  110 (138)
Q Consensus        31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v  110 (138)
                      ..+.+ ++..+|||++.++.+...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++..+..+.|++
T Consensus         8 ~~~~~-~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v   85 (94)
T 1vb7_A            8 LTVDV-AGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAA-DLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQL   85 (94)
T ss_dssp             EEEEE-CSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEE
T ss_pred             EEEEe-cCCCCccEEEecccCCCCCeEEEEECCCCHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEE
Confidence            33444 3557899999987665567999999999999999 999999999999999999999999999988778899999


Q ss_pred             EECCc
Q psy12579        111 RYTPK  115 (138)
Q Consensus       111 ~r~~~  115 (138)
                      .|+..
T Consensus        86 ~R~g~   90 (94)
T 1vb7_A           86 DRSSG   90 (94)
T ss_dssp             ECCCC
T ss_pred             EECCc
Confidence            98764

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.57  E-value=1.3e-13  Score=87.87  Aligned_cols=88  Identities=35%  Similarity=0.616  Sum_probs=75.0

Q ss_pred             CCCCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         26 GHAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      ...+...+.+.+...+|||++.+....   ..+++|..|.++|||+++ | |+.||+|++|||.++.++++.++..+++.
T Consensus        27 ~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~a-G~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~  105 (121)
T 2kom_A           27 KIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQD-GRLKAGDRLIEVNGVDLVGKSQEEVVSLLRS  105 (121)
T ss_dssp             CSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHH-TCCCSSSEEEEETTEECTTSCHHHHHHHHHH
T ss_pred             cCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEEcCCCCHHHHHHHHhc
Confidence            335666778888888999999876432   257999999999999999 6 99999999999999999999999999987


Q ss_pred             C--CCeEEEEEEECC
Q psy12579        102 A--QRSVKLVVRYTP  114 (138)
Q Consensus       102 ~--~~~v~l~v~r~~  114 (138)
                      .  +..+.|+|.|+.
T Consensus       106 ~~~g~~v~l~v~R~g  120 (121)
T 2kom_A          106 TKMEGTVSLLVFRQE  120 (121)
T ss_dssp             CCSSCEEEEEEEECC
T ss_pred             CCCCCEEEEEEEeCC
Confidence            4  788999998864

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.56  E-value=1.7e-14  Score=89.01  Aligned_cols=84  Identities=21%  Similarity=0.378  Sum_probs=74.3

Q ss_pred             CCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         26 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      .+.+...+.+.+...+|||.+...    .+++|..|.+++||+++ ||+.||+|++|||..+.++++.++..+++..+..
T Consensus        12 ~~~~~~~v~l~~~~~g~G~~~~~~----~~~~V~~V~~~spA~~a-GL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~   86 (100)
T 1whd_A           12 ENGEKLQITIRRGKDGFGFTICCD----SPVRVQAVDSGGPAERA-GLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSE   86 (100)
T ss_dssp             CCCEEEEEEEECCSSSSSCBCCCS----SSCBCCBCCTTSHHHHH-TCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSE
T ss_pred             cccceEEEEEECCCCeeeEEEeCC----CCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            345667788888888999998763    56899999999999999 8999999999999999999999999999988888


Q ss_pred             EEEEEEECC
Q psy12579        106 VKLVVRYTP  114 (138)
Q Consensus       106 v~l~v~r~~  114 (138)
                      +.|+|.|+.
T Consensus        87 v~l~v~R~~   95 (100)
T 1whd_A           87 IILLVWRVS   95 (100)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECC
Confidence            999998874

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.56  E-value=1.7e-14  Score=89.12  Aligned_cols=88  Identities=38%  Similarity=0.623  Sum_probs=73.0

Q ss_pred             CCCCCcEEEEEecC--CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         25 EGHAHPRVVELPKT--DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        25 ~~~~~~~~v~l~~~--~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      ..+.+.+++.+.+.  ..+|||++.+..+...+++|..|.+++||+++ ||+.||+|++|||..+.++.+.++...++. 
T Consensus         4 ~~~~~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~~~~-   81 (101)
T 1uez_A            4 GSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLARVTHAEAVKALKG-   81 (101)
T ss_dssp             CCSCCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHH-TCCSSCCEEEETTEECSSCCHHHHHHHSSS-
T ss_pred             CCCCccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHhhcC-
Confidence            44567888888873  47899999987665678999999999999999 899999999999999999988776665543 


Q ss_pred             CCeEEEEEEECC
Q psy12579        103 QRSVKLVVRYTP  114 (138)
Q Consensus       103 ~~~v~l~v~r~~  114 (138)
                      +..+.|+|.|+.
T Consensus        82 ~~~v~l~v~R~g   93 (101)
T 1uez_A           82 SKKLVLSVYSAG   93 (101)
T ss_dssp             SSSCCEEECCCC
T ss_pred             CCeEEEEEEECC
Confidence            467888888765

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.56  E-value=4.8e-14  Score=87.53  Aligned_cols=86  Identities=26%  Similarity=0.400  Sum_probs=71.9

Q ss_pred             cCCCCCcEEEEEecCC-CCcCeEEeccC-------CCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579         24 SEGHAHPRVVELPKTD-EGLGFNVMGGK-------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA   95 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~-~~~G~~l~~~~-------~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~   95 (138)
                      +..++.++.+.+.+.. .+|||++.+..       +...+++|..|.+++||+++ ||+.||+|++|||.++.++++.++
T Consensus        10 p~s~~~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~a-Gl~~GD~I~~vng~~v~~~~~~~~   88 (104)
T 2z17_A           10 DFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCA-GLQAGDVLANINGVSTEGFTYKQV   88 (104)
T ss_dssp             -CCCSCCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHH-TCCTTCBCCEETTEECTTCCHHHH
T ss_pred             cCCCCcceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHc-CCCCCCEEEEECCEEcCCCCHHHH
Confidence            3455677888898864 68999998732       22457999999999999999 899999999999999998899999


Q ss_pred             HHHHHhCCCeEEEEE
Q psy12579         96 VELLKQAQRSVKLVV  110 (138)
Q Consensus        96 ~~~l~~~~~~v~l~v  110 (138)
                      ..+++..++.+.|+|
T Consensus        89 ~~~l~~~~~~v~l~v  103 (104)
T 2z17_A           89 VDLIRSSGNLLTIET  103 (104)
T ss_dssp             HHHHHHTTTEEEEEC
T ss_pred             HHHHHhCCCcEEEEE
Confidence            999998877777764

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.56  E-value=5.5e-14  Score=89.74  Aligned_cols=87  Identities=28%  Similarity=0.468  Sum_probs=75.0

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccC----CCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~----~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      .++++|.+.++. .+|||++.++.    +...+++|..|.+++||+++ + |+.||+|++||+..+.++++.++..+++.
T Consensus        14 ~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~a-G~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   92 (122)
T 1v5q_A           14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERC-GVLQIGDRVMAINGIPTEDSTFEEANQLLRD   92 (122)
T ss_dssp             EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHS-CCCCTTCCEEEETTEESSSSCHHHHHHHHHH
T ss_pred             ceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            567888898875 89999999752    12456899999999999999 7 99999999999999999889999999987


Q ss_pred             C--CCeEEEEEEECCc
Q psy12579        102 A--QRSVKLVVRYTPK  115 (138)
Q Consensus       102 ~--~~~v~l~v~r~~~  115 (138)
                      .  +..+.|+|.|+..
T Consensus        93 ~~~g~~v~l~v~R~~~  108 (122)
T 1v5q_A           93 SSITSKVTLEIEFDVA  108 (122)
T ss_dssp             HTTTTCEEEEEEEECC
T ss_pred             CCCCCeEEEEEEECCc
Confidence            5  6799999998753

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.56  E-value=8.4e-14  Score=84.91  Aligned_cols=85  Identities=26%  Similarity=0.480  Sum_probs=69.9

Q ss_pred             CCcEEEEEecCCC---CcCeEEeccCC-CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         28 AHPRVVELPKTDE---GLGFNVMGGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        28 ~~~~~v~l~~~~~---~~G~~l~~~~~-~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      ..++.|++.+.+.   +|||++..... ...+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..++++  
T Consensus         5 ~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~a-GL~~GD~Il~vng~~v~~~~~~~l~~~l~~--   81 (94)
T 3kzd_A            5 KVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKK-GLKAGDEILEINNRAADALNSSMLKDFLSQ--   81 (94)
T ss_dssp             CEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHT-TCCTTCEEEEETTEEGGGCCHHHHHHHHHS--
T ss_pred             cceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhC--
Confidence            4568899998763   79999987432 2357999999999999999 999999999999999999999999998874  


Q ss_pred             CeEEEEEEECCc
Q psy12579        104 RSVKLVVRYTPK  115 (138)
Q Consensus       104 ~~v~l~v~r~~~  115 (138)
                      ..+.++|+.-|+
T Consensus        82 ~~l~ltV~~~p~   93 (94)
T 3kzd_A           82 PSLGLLVRTYPE   93 (94)
T ss_dssp             SEEEEEEEECCC
T ss_pred             CeEEEEEEecCC
Confidence            578888887664

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.56  E-value=8.7e-14  Score=89.14  Aligned_cols=87  Identities=23%  Similarity=0.437  Sum_probs=72.3

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeE
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSV  106 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v  106 (138)
                      ..+.+. .....+|||.+.++.  ..+++|..|.++|||+++ ||+.||+|++|||..+.++++.++..++..  .+..+
T Consensus        29 ~~~~~~-~~~~~~lG~~l~~~~--~~gv~V~~V~~gspA~~a-GL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v  104 (124)
T 3tsv_A           29 SMKLVK-FRKGDSVGLRLAGGN--DVGIFVAGVLEDSPAAKE-GLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEV  104 (124)
T ss_dssp             CCEEEE-EECSSCCCEEEEECT--TSCEEEEEECTTCHHHHT-TCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEE
T ss_pred             CeEEEE-cCCCCceeEEEecCC--CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEE
Confidence            334333 344578999998754  467999999999999999 899999999999999999999999998874  67899


Q ss_pred             EEEEEECCchHHH
Q psy12579        107 KLVVRYTPKVLEE  119 (138)
Q Consensus       107 ~l~v~r~~~~~~~  119 (138)
                      .|++.|++..++.
T Consensus       105 ~l~v~R~~~~~~~  117 (124)
T 3tsv_A          105 TILAQKKKDVYRR  117 (124)
T ss_dssp             EEEEEECHHHHHH
T ss_pred             EEEEEECCchhhh
Confidence            9999999866543

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.55  E-value=9e-14  Score=95.58  Aligned_cols=89  Identities=33%  Similarity=0.491  Sum_probs=78.2

Q ss_pred             CCCCcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         26 GHAHPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        26 ~~~~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      .+..++.+.+.+. +.+|||++.++.+...+++|..|.+++||+++++|+.||+|++|||..+.++++.++..+++..+.
T Consensus         4 ~~~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   83 (200)
T 2qt5_A            4 SFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGE   83 (200)
T ss_dssp             CCEEEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCS
T ss_pred             ccCCCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            3456677888764 478999999887666789999999999999988999999999999999999999999999988899


Q ss_pred             eEEEEEEECC
Q psy12579        105 SVKLVVRYTP  114 (138)
Q Consensus       105 ~v~l~v~r~~  114 (138)
                      .+.|++.|+.
T Consensus        84 ~v~l~v~R~~   93 (200)
T 2qt5_A           84 RVVLEVEYEL   93 (200)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEeccC
Confidence            9999998864

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.55  E-value=1e-13  Score=89.06  Aligned_cols=89  Identities=29%  Similarity=0.515  Sum_probs=76.5

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-  103 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~-  103 (138)
                      .....++.+.+.++..+|||.+.+..+ ..+++|..|.++|||+++ ||+.||.|++|||..+.++++.++..+++... 
T Consensus         5 ~~~~~~r~v~l~~~~~g~G~~l~~~~~-~~gv~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   82 (128)
T 2kjd_A            5 FTMLRPRLCTMKKGPSGYGFNLHSDKS-KPGQFIRSVDPDSPAEAS-GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGD   82 (128)
T ss_dssp             TTTCCCEEEEEECCSSSCCEEEEECSS-SCSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTTCS
T ss_pred             CCCCCcEEEEEecCCCcccEEEEecCC-CCCEEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            345688999999999999999987643 347999999999999999 89999999999999999988999999998864 


Q ss_pred             CeEEEEEEECCc
Q psy12579        104 RSVKLVVRYTPK  115 (138)
Q Consensus       104 ~~v~l~v~r~~~  115 (138)
                      ..+.+++.|+..
T Consensus        83 ~~~~l~v~R~g~   94 (128)
T 2kjd_A           83 ETKLLVVDRETD   94 (128)
T ss_dssp             EEEEEEECHHHH
T ss_pred             CEEEEEEEeCCc
Confidence            456688887654

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.54  E-value=8e-14  Score=86.97  Aligned_cols=82  Identities=26%  Similarity=0.327  Sum_probs=70.6

Q ss_pred             cEEEEEec-CCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         30 PRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        30 ~~~v~l~~-~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      ..+|+|.+ ...++||++.+.   ..+++|..|.++|||+++|.|+.||.|++|||.++.+.++.++..+++..++.+.|
T Consensus         3 ~~~v~L~k~~~~glG~~i~~~---~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l   79 (106)
T 2la8_A            3 KFNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSM   79 (106)
T ss_dssp             EEEEEECCBSSSTTCCEEEEC---SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEE
T ss_pred             EEEEEEEeCCCCccCEEEEeC---CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Confidence            35677864 557899998772   46799999999999999933999999999999999999999999999988888999


Q ss_pred             EEEECC
Q psy12579        109 VVRYTP  114 (138)
Q Consensus       109 ~v~r~~  114 (138)
                      ++.|..
T Consensus        80 ~v~R~~   85 (106)
T 2la8_A           80 EVTRPK   85 (106)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            998864

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.54  E-value=3e-13  Score=82.89  Aligned_cols=86  Identities=22%  Similarity=0.390  Sum_probs=72.9

Q ss_pred             cCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-
Q psy12579         24 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-  102 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-  102 (138)
                      .....+...+.+.++..+|||++...   ..+++|..|.++  |+.+ +|+.||+|++|||.++.++++.++..+++.. 
T Consensus         5 ~~~~~~~~~v~l~~~~~g~G~~i~~~---~~Gv~V~~v~~~--a~~a-GL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   78 (96)
T 1ujv_A            5 SSGQAELMTLTIVKGAQGFGFTIADS---PTGQRVKQILDI--QGCP-GLCEGDLIVEINQQNVQNLSHTEVVDILKDCP   78 (96)
T ss_dssp             CCCCCCCEEEEEECCSSSSSEEEEEE---TTEEEEEEESCG--GGST-TCCSSCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             CCCCceEEEEEEEeCCCceeEEEEcC---CCCEEEEEEecc--cccC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            34456788899999999999999753   346999999983  5566 9999999999999999999999999999984 


Q ss_pred             -CCeEEEEEEECCc
Q psy12579        103 -QRSVKLVVRYTPK  115 (138)
Q Consensus       103 -~~~v~l~v~r~~~  115 (138)
                       +..+.|+|.|+..
T Consensus        79 ~g~~v~l~v~R~g~   92 (96)
T 1ujv_A           79 IGSETSLIIHRGSG   92 (96)
T ss_dssp             TTSEEEEEEECCSS
T ss_pred             CCCEEEEEEEECCC
Confidence             6889999998753

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.53  E-value=1.3e-13  Score=87.01  Aligned_cols=87  Identities=33%  Similarity=0.505  Sum_probs=75.9

Q ss_pred             CCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         27 HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        27 ~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      ...++++.+.+.. ..|||.+....+ ..+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..+++..+..
T Consensus        11 ~ldp~~~~l~~~~~~~~G~~l~~~~~-~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~   88 (114)
T 2edz_A           11 TFNPRECKLSKQEGQNYGFFLRIEKD-TDGHLIRVIEEGSPAEKA-GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNS   88 (114)
T ss_dssp             CCCCEEEEEECCTTCCCSCEEECCTT-CCSCEEECCCTTCTTGGG-TCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSE
T ss_pred             cCCCEEEEEeCCCCCcccEEEEEecC-CCCeEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCE
Confidence            3478889998764 789999987533 457999999999999999 8999999999999999999999999999888899


Q ss_pred             EEEEEEECCc
Q psy12579        106 VKLVVRYTPK  115 (138)
Q Consensus       106 v~l~v~r~~~  115 (138)
                      +.|++.|+..
T Consensus        89 v~l~v~R~~~   98 (114)
T 2edz_A           89 VTLLVLDGDS   98 (114)
T ss_dssp             EEEEEECHHH
T ss_pred             EEEEEEECCc
Confidence            9999998753

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.53  E-value=2.3e-13  Score=85.73  Aligned_cols=85  Identities=33%  Similarity=0.553  Sum_probs=72.5

Q ss_pred             CCCcEEEEEec-CCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         27 HAHPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        27 ~~~~~~v~l~~-~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      ....+++.+.+ +..+|||++.++.+...+++|..|.++++|+.+ ||+.||+|++|||.++.++.+.++..+++.. ..
T Consensus        13 ~~~~~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~a-GL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~   90 (114)
T 1x5n_A           13 ENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RS   90 (114)
T ss_dssp             CCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTT-TCCTTCEEEEETTEETTSCCTTHHHHHHHHC-SS
T ss_pred             CCCcEEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcC-Ce
Confidence            35567788855 457899999987655678999999999999999 8999999999999999999887888888765 68


Q ss_pred             EEEEEEEC
Q psy12579        106 VKLVVRYT  113 (138)
Q Consensus       106 v~l~v~r~  113 (138)
                      +.|++.|+
T Consensus        91 v~l~v~r~   98 (114)
T 1x5n_A           91 LTISIVAA   98 (114)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEEcC
Confidence            89999887

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.53  E-value=5.4e-14  Score=90.29  Aligned_cols=83  Identities=25%  Similarity=0.313  Sum_probs=73.0

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCe
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~  105 (138)
                      .....+.+.++..+|||++.+.   ..+++|..|.+++||+++|.|+.||.|++|||..+.+.++.++..+++.  .+..
T Consensus        26 ~~~~~~~l~k~~~glG~~i~~~---~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~  102 (126)
T 1wif_A           26 NKVIQTKLTVGNLGLGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTV  102 (126)
T ss_dssp             CCEEEEEEECCTTCCCCCEEEE---TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCE
T ss_pred             CceEEEEEecCCceEeEEEEcC---CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCE
Confidence            4667788898889999999863   3468999999999999993399999999999999998899999999987  4788


Q ss_pred             EEEEEEEC
Q psy12579        106 VKLVVRYT  113 (138)
Q Consensus       106 v~l~v~r~  113 (138)
                      +.|+|.|+
T Consensus       103 v~l~V~R~  110 (126)
T 1wif_A          103 LQIKAYRG  110 (126)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEEEC
Confidence            99999987

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.52  E-value=1.2e-14  Score=91.51  Aligned_cols=86  Identities=28%  Similarity=0.418  Sum_probs=73.7

Q ss_pred             ccCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         23 ASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        23 ~~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      ....+..+++|++.+++.+|||.+.+    ..+++|..|.++++|+++ ||+.||+|++|||..+.++++.++..+++..
T Consensus         9 ~~~~~~~~r~v~l~~~~~~~G~~l~~----~~~v~V~~V~~~spA~~a-GL~~GD~Il~InG~~v~~~~~~d~~~~i~~~   83 (111)
T 1vae_A            9 ASKRWSPPRGIHFTVEEGDLGFTLRG----NTPVQVHFLDPHCSASLA-GAKEGDYIVSIQGVDCKWLTVSEVMKLLKSF   83 (111)
T ss_dssp             CCCEECCCCCCCEECCSSCCSCCEES----SSSCEECCCCTTSSHHHH-HCCTTCEEEEETTEECSSCCHHHHHHHHHHT
T ss_pred             cccCCCCCeEEEEEcCCCcccEEEeC----CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            33445678889999988999999976    346899999999999999 9999999999999999988999999999887


Q ss_pred             CC-eEEEEEEEC
Q psy12579        103 QR-SVKLVVRYT  113 (138)
Q Consensus       103 ~~-~v~l~v~r~  113 (138)
                      ++ .+.|+|.+.
T Consensus        84 ~~~~v~l~V~~~   95 (111)
T 1vae_A           84 GGEEVEMKVVSL   95 (111)
T ss_dssp             TTSEECEEEECE
T ss_pred             CCceEEEEEEec
Confidence            54 588888765

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.51  E-value=2.3e-13  Score=82.05  Aligned_cols=77  Identities=27%  Similarity=0.466  Sum_probs=65.9

Q ss_pred             EEEec--CCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579         33 VELPK--TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV  110 (138)
Q Consensus        33 v~l~~--~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v  110 (138)
                      +.+.+  ....|||.+.+      +++|..|.++|+|+++|.|+.||+|++|||.++.++++.++..+++..++.+.|++
T Consensus         4 v~l~~~~~~~~~G~~~~~------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v   77 (88)
T 3e17_A            4 VLLMKSRANEEYGLRLGS------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVV   77 (88)
T ss_dssp             EEEECBTTBCCCCEEEEE------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEE
T ss_pred             EEEEeCCCCCCCCEEEeC------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            45544  33689999875      59999999999999994499999999999999999999999999999999999999


Q ss_pred             EECCc
Q psy12579        111 RYTPK  115 (138)
Q Consensus       111 ~r~~~  115 (138)
                      .+.+.
T Consensus        78 ~~~~~   82 (88)
T 3e17_A           78 LRDLE   82 (88)
T ss_dssp             CCC--
T ss_pred             eCCCc
Confidence            87654

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=9.1e-14  Score=87.82  Aligned_cols=86  Identities=26%  Similarity=0.505  Sum_probs=71.8

Q ss_pred             CCcEEEEEecCCC---CcCeEEeccCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         28 AHPRVVELPKTDE---GLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        28 ~~~~~v~l~~~~~---~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      ..++.+.+.+.+.   +|||++.+..+.. .+++|..|.+++||+++ ||+.||+|++|||.++.++++.++..+++.  
T Consensus        14 ~~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~a-GL~~GD~Il~Ing~~v~~~~~~~~~~~l~~--   90 (114)
T 2d8i_A           14 KVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKK-GLKAGDEILEINNRAADALNSSMLKDFLSQ--   90 (114)
T ss_dssp             CEEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHH-TCCTTCCEEEESSCBGGGCCHHHHHHHHTS--
T ss_pred             CceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHc-CCCCCCEEEEECCEECCCcCHHHHHHHHhC--
Confidence            3567889988764   7999998744322 46999999999999999 899999999999999999888888888875  


Q ss_pred             CeEEEEEEECCch
Q psy12579        104 RSVKLVVRYTPKV  116 (138)
Q Consensus       104 ~~v~l~v~r~~~~  116 (138)
                      ..+.|+|.|.+..
T Consensus        91 ~~v~l~v~R~p~~  103 (114)
T 2d8i_A           91 PSLGLLVRTYPEL  103 (114)
T ss_dssp             SEEEEEEEECCCS
T ss_pred             CcEEEEEEECCCC
Confidence            3899999998743

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.50  E-value=2.5e-13  Score=103.96  Aligned_cols=89  Identities=24%  Similarity=0.438  Sum_probs=79.4

Q ss_pred             cEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEE
Q psy12579         30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVK  107 (138)
Q Consensus        30 ~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~  107 (138)
                      ++.|++.++ .+|||++.++.  ..|++|..|.+||||+++ ||+.||+|++|||..+.++++.++..+++.  .+..+.
T Consensus         2 ~r~V~l~k~-~~lG~~i~gg~--~~Gi~V~~V~~gspA~~a-GL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~   77 (468)
T 3shw_A            2 MKLVKFRKG-DSVGLRLAGGN--DVGIFVAGVLEDSPAAKE-GLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVT   77 (468)
T ss_dssp             EEEEEEECC-SSCCEEEEEET--TTEEEEEEECSSSHHHHT-TCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEE
T ss_pred             ceEEEEecC-CccceEEEccC--cCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEE
Confidence            578888886 88999998875  467999999999999999 799999999999999999999999999998  788999


Q ss_pred             EEEEECCchHHHHHH
Q psy12579        108 LVVRYTPKVLEEMEM  122 (138)
Q Consensus       108 l~v~r~~~~~~~~~~  122 (138)
                      |++.|++..+..+..
T Consensus        78 L~V~r~g~~~~~~~~   92 (468)
T 3shw_A           78 ILAQKKKDVYRRIVE   92 (468)
T ss_dssp             EEEEECHHHHHHHHH
T ss_pred             EEEEECCccchhhhc
Confidence            999999877766543

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.50  E-value=2.7e-13  Score=88.50  Aligned_cols=88  Identities=31%  Similarity=0.491  Sum_probs=73.1

Q ss_pred             CCcEEEEEecCC----CCcCeEEeccCC------------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCC
Q psy12579         28 AHPRVVELPKTD----EGLGFNVMGGKE------------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED   91 (138)
Q Consensus        28 ~~~~~v~l~~~~----~~~G~~l~~~~~------------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~   91 (138)
                      ...+.|.|.+.+    .+|||++.++.+            ...+++|..|.++|||+++ ||+.||.|++|||.++.+++
T Consensus        22 ~~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-GL~~GD~I~~vng~~v~~~~  100 (139)
T 2vz5_A           22 SMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA-GLQIGDKIMQVNGWDMTMVT  100 (139)
T ss_dssp             CEEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCC
T ss_pred             CceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHC-CCCCCCEEEEECCEEcCCCC
Confidence            456778887744    379999987543            1368999999999999999 89999999999999999989


Q ss_pred             HHHHHHHHHh-CCCeEEEEEEECCch
Q psy12579         92 HGKAVELLKQ-AQRSVKLVVRYTPKV  116 (138)
Q Consensus        92 ~~~~~~~l~~-~~~~v~l~v~r~~~~  116 (138)
                      +.++..+++. .+..+.|+|.|++..
T Consensus       101 ~~~~~~~l~~~~g~~v~l~v~R~g~~  126 (139)
T 2vz5_A          101 HDQARKRLTKRSEEVVRLLVTRQSLQ  126 (139)
T ss_dssp             HHHHHHHHCCTTCSEEEEEEEECC--
T ss_pred             HHHHHHHHHhCCCCEEEEEEEECCEE
Confidence            9999999987 467899999998643

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.49  E-value=5e-13  Score=82.80  Aligned_cols=81  Identities=35%  Similarity=0.559  Sum_probs=66.7

Q ss_pred             EEEEecCC----CCcCeEEeccCCC------------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579         32 VVELPKTD----EGLGFNVMGGKEQ------------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA   95 (138)
Q Consensus        32 ~v~l~~~~----~~~G~~l~~~~~~------------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~   95 (138)
                      .+++.+..    .+|||++.++.+.            ..+++|..|.++|||+++ ||+.||.|++|||.++.+.++.++
T Consensus         7 ~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~   85 (104)
T 3sfj_A            7 RVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA-GLQIGDKIMQVNGWDMTMVTHDQA   85 (104)
T ss_dssp             EEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHH
T ss_pred             EEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHH
Confidence            45555532    2599999965532            457999999999999999 899999999999999999999999


Q ss_pred             HHHHHh-CCCeEEEEEEEC
Q psy12579         96 VELLKQ-AQRSVKLVVRYT  113 (138)
Q Consensus        96 ~~~l~~-~~~~v~l~v~r~  113 (138)
                      ...++. .+..+.|++.|.
T Consensus        86 ~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           86 RKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             HHHHTCTTCSEEEEEEEEC
T ss_pred             HHHHHhCCCCEEEEEEEcC
Confidence            999976 467899988773

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=99.24  E-value=2e-15  Score=95.18  Aligned_cols=87  Identities=46%  Similarity=0.704  Sum_probs=73.6

Q ss_pred             CCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         26 GHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        26 ~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ....++++.+.+.. .+|||++.++.+...+++|..|.++|||+++++|++||+|++|||.++.+.++.++..+++..++
T Consensus        24 ~~~~~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~  103 (112)
T 2lob_A           24 YFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRG  103 (112)
Confidence            34567788887765 78999999876656689999999999999933999999999999999999889999999988777


Q ss_pred             eEEEEEEE
Q psy12579        105 SVKLVVRY  112 (138)
Q Consensus       105 ~v~l~v~r  112 (138)
                      .+.|+|.+
T Consensus       104 ~v~l~V~~  111 (112)
T 2lob_A          104 EIEFEVVY  111 (112)
Confidence            78777653

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.49  E-value=6.9e-13  Score=80.37  Aligned_cols=77  Identities=27%  Similarity=0.475  Sum_probs=64.3

Q ss_pred             CcEEEEEec--CCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         29 HPRVVELPK--TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        29 ~~~~v~l~~--~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      +.+.+.+.+  ...+|||.+.+      + +|..|.++|+|+++ ||+.||.|++|||.++.+.++.++..+++..+..+
T Consensus        11 ~~~~~~i~~~~~~~~lG~~~~~------G-~V~~V~~~spA~~a-GL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v   82 (90)
T 1y7n_A           11 NVTTVLIRRPDLRYQLGFSVQN------G-IICSLMRGGIAERG-GVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEI   82 (90)
T ss_dssp             SCEEEEEEESSTTSCCCEEEET------T-EEEEECTTSHHHHH-TCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEE
T ss_pred             CcceEEEEeCCCccccCeEecC------C-EEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            334444444  44789999864      2 89999999999999 89999999999999999999999999999888889


Q ss_pred             EEEEEEC
Q psy12579        107 KLVVRYT  113 (138)
Q Consensus       107 ~l~v~r~  113 (138)
                      .|++.+.
T Consensus        83 ~l~v~p~   89 (90)
T 1y7n_A           83 HMKTMPA   89 (90)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            8888753

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.49  E-value=3.1e-14  Score=88.28  Aligned_cols=83  Identities=30%  Similarity=0.459  Sum_probs=71.5

Q ss_pred             EEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579         31 RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV  110 (138)
Q Consensus        31 ~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v  110 (138)
                      +++.+ ++..+|||++.++.+...+++|..|.+++||+++ +|+.||+|++||+.++.++++.++..+++..+..+.|+|
T Consensus         7 ~~v~~-~~~~~lG~~l~~g~~~~~~~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v   84 (103)
T 1v5l_A            7 GNVVL-PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAA-NLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKI   84 (103)
T ss_dssp             BCCEE-ESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGG-TCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEE
T ss_pred             EEEEE-cCCCCcCEEEeccccCCCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence            33444 3557899999987655557999999999999999 999999999999999999889999999988888999999


Q ss_pred             EECCc
Q psy12579        111 RYTPK  115 (138)
Q Consensus       111 ~r~~~  115 (138)
                      .|+..
T Consensus        85 ~R~g~   89 (103)
T 1v5l_A           85 DRAET   89 (103)
T ss_dssp             CCCTT
T ss_pred             EECCe
Confidence            98864

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.46  E-value=2.4e-12  Score=80.73  Aligned_cols=84  Identities=31%  Similarity=0.448  Sum_probs=71.8

Q ss_pred             EEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEE
Q psy12579         31 RVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGL-KRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVK  107 (138)
Q Consensus        31 ~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl-~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~v~  107 (138)
                      .+|++.++ ..+|||.+.+..+ ..+++|..|.++|||+++ |+ +.||.|++|||..+.++++.++..+++.. +..+.
T Consensus         3 ~~v~l~~~~~~glG~~~~~~~~-~~~~~V~~v~~~spA~~a-Gll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~   80 (112)
T 1qau_A            3 ISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQS-GLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV   80 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSS-SSCEEEEEECTTSHHHHH-TCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEE
T ss_pred             EEEEEEcCCCCceeEEEEecCC-CCCEEEEEeCCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEE
Confidence            46788776 4789999987543 457999999999999999 87 99999999999999998899999999874 67899


Q ss_pred             EEEEECCch
Q psy12579        108 LVVRYTPKV  116 (138)
Q Consensus       108 l~v~r~~~~  116 (138)
                      |++.|++..
T Consensus        81 l~v~R~g~~   89 (112)
T 1qau_A           81 VLILRGPEG   89 (112)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEeCCcc
Confidence            999998753

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.45  E-value=6.3e-13  Score=106.81  Aligned_cols=91  Identities=38%  Similarity=0.640  Sum_probs=80.6

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL   99 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l   99 (138)
                      ....++++|.|.++..+|||+|.+|.+.     ..+++|..|.+||||+++|.|+.||+|++|||..+.++++.++..++
T Consensus        55 ~~~~~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l  134 (721)
T 2xkx_A           55 EGEMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL  134 (721)
T ss_pred             CCCceEEEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence            3446778899999989999999998754     56799999999999999944999999999999999999999999999


Q ss_pred             HhCCCeEEEEEEECCc
Q psy12579        100 KQAQRSVKLVVRYTPK  115 (138)
Q Consensus       100 ~~~~~~v~l~v~r~~~  115 (138)
                      +..+..+.|+|.|...
T Consensus       135 ~~~g~~v~l~v~R~~~  150 (721)
T 2xkx_A          135 KEAGSIVRLYVMRRKP  150 (721)
T ss_pred             hccccccceEEEeccc
Confidence            9889999999988753

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.45  E-value=3e-12  Score=82.19  Aligned_cols=88  Identities=39%  Similarity=0.547  Sum_probs=73.2

Q ss_pred             CCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         27 HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        27 ~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      ..+.+++.+.... ..|||++.++.+...+++|..|.+++||+++ ||+.||.|++|||..+.++.+.++...++. +..
T Consensus        18 ~g~~~~v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~a-GL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~   95 (128)
T 1uf1_A           18 GGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS-GLKVGDQILEVNGRSFLNILHDEAVRLLKS-SRH   95 (128)
T ss_dssp             CSSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHH-TCCTTCEEEEETTEECSSCCHHHHHHHHTT-CSE
T ss_pred             CCcEEEEEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCe
Confidence            3466777777544 6799999886655568999999999999999 899999999999999999988888877766 468


Q ss_pred             EEEEEEECCch
Q psy12579        106 VKLVVRYTPKV  116 (138)
Q Consensus       106 v~l~v~r~~~~  116 (138)
                      +.|+|.|+...
T Consensus        96 v~l~v~R~g~~  106 (128)
T 1uf1_A           96 LILTVKDVGRL  106 (128)
T ss_dssp             EEEEEECCSCC
T ss_pred             EEEEEEECCcc
Confidence            99999988643

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.45  E-value=1.6e-12  Score=88.92  Aligned_cols=72  Identities=36%  Similarity=0.656  Sum_probs=65.5

Q ss_pred             CCCcCeEEeccCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEE
Q psy12579         39 DEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV  110 (138)
Q Consensus        39 ~~~~G~~l~~~~~--------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v  110 (138)
                      +.+|||+|.|+.+        ...+++|..|.+++||++  +|+.||.|++|||..+.++++.++..+++..+..+.|+|
T Consensus         1 ~~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~--gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v   78 (195)
T 2qbw_A            1 SPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELII   78 (195)
T ss_dssp             CCCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEE
T ss_pred             CCcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh--CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            3579999999753        256899999999999998  899999999999999999999999999999988999999


Q ss_pred             EE
Q psy12579        111 RY  112 (138)
Q Consensus       111 ~r  112 (138)
                      .|
T Consensus        79 ~r   80 (195)
T 2qbw_A           79 VR   80 (195)
T ss_dssp             EE
T ss_pred             EE
Confidence            98

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.44  E-value=2.2e-13  Score=94.94  Aligned_cols=87  Identities=30%  Similarity=0.538  Sum_probs=75.9

Q ss_pred             CCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         26 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      ....++.|+|.++..+|||.+.++.+ ..+++|..|.++++|+.+ ||+.||+|++|||..+.++++.++..+++..+..
T Consensus         6 ~~~~~r~v~l~k~~~glG~~l~~~~~-~~gv~V~~V~~gSpA~~a-GL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~   83 (216)
T 2krg_A            6 TMLRPRLCTMKKGPSGYGFNLHSDKS-KPGQFIRSVDPDSPAEAS-GLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDE   83 (216)
T ss_dssp             TTCCCEEEEEECCSSSSCEEECCCSS-SCSCBEEEECTTSHHHHH-TCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSE
T ss_pred             cccceEEEEEEeCCCCceEEEEecCC-CCCeEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCe
Confidence            34678999999999999999987643 347999999999999999 8999999999999999988899999998877778


Q ss_pred             E-EEEEEECC
Q psy12579        106 V-KLVVRYTP  114 (138)
Q Consensus       106 v-~l~v~r~~  114 (138)
                      + .++|.|++
T Consensus        84 v~~l~V~R~g   93 (216)
T 2krg_A           84 TKLLVVDRET   93 (216)
T ss_dssp             EEEEECCHHH
T ss_pred             EEEEEEEECC
Confidence            8 88887765

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.44  E-value=2.8e-12  Score=78.76  Aligned_cols=81  Identities=21%  Similarity=0.363  Sum_probs=69.2

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh---CCCe
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ---AQRS  105 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~---~~~~  105 (138)
                      ..+.+.+.....+|||.+...   ..+++|..|.++|||+.+ ||++||.|++|||..+...+++++...++.   .+..
T Consensus        17 ~~~~l~l~~~~~g~G~~l~~~---~~~~~I~~V~~gSpA~~A-GL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~   92 (101)
T 3qik_A           17 LAKRLLILPQEEDYGFDIEEK---NKAVVVKSVQRGSLAEVA-GLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRP   92 (101)
T ss_dssp             TEEEEEECCCSSSSSEEEEEE---TTEEEEEEECTTSHHHHH-TCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCC
T ss_pred             ecCeEEEEeCCCcccEEEEcc---CCCeEEEEECCCCHHHHc-CCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCe
Confidence            345677777788999999863   346899999999999999 999999999999999987889999999876   5888


Q ss_pred             EEEEEEEC
Q psy12579        106 VKLVVRYT  113 (138)
Q Consensus       106 v~l~v~r~  113 (138)
                      +.|.|...
T Consensus        93 v~LLV~~~  100 (101)
T 3qik_A           93 LRLLVATK  100 (101)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99988653

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.43  E-value=1.1e-12  Score=98.72  Aligned_cols=89  Identities=25%  Similarity=0.460  Sum_probs=76.5

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCe
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~  105 (138)
                      ..++.+.+.++. +|||++.++.  ..+++|..|.+||||+++ ||+.||+|++|||.++.++++.++..+++.  .|..
T Consensus         8 ~~~~~v~~~k~~-~lG~~i~gg~--~~gi~V~~V~~gspA~~a-GL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~   83 (391)
T 3tsz_A            8 PSMKLVKFRKGD-SVGLRLAGGN--DVGIFVAGVLEDSPAAKE-GLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE   83 (391)
T ss_dssp             -CEEEEEEECCS-SCCEEEEEET--TTEEEEEEECTTCHHHHT-TCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSE
T ss_pred             CCcEEEEeecCC-ceeEEEEecC--CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCe
Confidence            456777777764 6999999865  468999999999999999 799999999999999999999999999985  6889


Q ss_pred             EEEEEEECCchHHHH
Q psy12579        106 VKLVVRYTPKVLEEM  120 (138)
Q Consensus       106 v~l~v~r~~~~~~~~  120 (138)
                      +.|++.|++..+..+
T Consensus        84 v~l~v~r~~~~~~~~   98 (391)
T 3tsz_A           84 VTILAQKKKDVYRRI   98 (391)
T ss_dssp             EEEEEEECHHHHGGG
T ss_pred             EEEEEeeCCcccccc
Confidence            999999997655443

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.43  E-value=1.8e-12  Score=88.29  Aligned_cols=87  Identities=37%  Similarity=0.593  Sum_probs=73.4

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      ...++.+.+...+|||++.++.+.     ..+++|..|.++|+|+++|.|+.||+|++|||.++.++++.++..+++..+
T Consensus       100 ~~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  179 (196)
T 3gsl_A          100 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY  179 (196)
T ss_dssp             EEEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCC
T ss_pred             ccEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCC
Confidence            344566666677899999875432     247999999999999999339999999999999999999999999999888


Q ss_pred             CeEEEEEEECCc
Q psy12579        104 RSVKLVVRYTPK  115 (138)
Q Consensus       104 ~~v~l~v~r~~~  115 (138)
                      ..+.|+|.|+..
T Consensus       180 ~~v~l~v~R~~~  191 (196)
T 3gsl_A          180 DVVYLKVAKPSN  191 (196)
T ss_dssp             EEEEEEEEEESC
T ss_pred             CeEEEEEeCCCC
Confidence            899999998754

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.42  E-value=2.6e-12  Score=88.07  Aligned_cols=87  Identities=28%  Similarity=0.459  Sum_probs=75.5

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCC----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      .+.++|.+.++. .+|||++.++.+.    ..+++|..|.++|||+++ | |+.||.|++|||..+.++++.++..+++.
T Consensus         5 ~~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~   83 (196)
T 1p1d_A            5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERC-GVLQIGDRVMAINGIPTEDSTFEEANQLLRD   83 (196)
T ss_dssp             CEEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHT-SCCCSSCCEEEETTBCSTTSCHHHHHHHHHT
T ss_pred             cEEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            466788898875 8999999987432    356899999999999999 7 99999999999999998889999999988


Q ss_pred             C--CCeEEEEEEECCc
Q psy12579        102 A--QRSVKLVVRYTPK  115 (138)
Q Consensus       102 ~--~~~v~l~v~r~~~  115 (138)
                      .  +..+.|++.|+..
T Consensus        84 ~~~g~~v~l~v~R~~~   99 (196)
T 1p1d_A           84 SSITSKVTLEIEFDVA   99 (196)
T ss_dssp             CCSSSEEEEEEEECSC
T ss_pred             CCCCCeEEEEEEecCC
Confidence            6  7789999998864

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.41  E-value=5.5e-12  Score=76.27  Aligned_cols=80  Identities=29%  Similarity=0.510  Sum_probs=66.4

Q ss_pred             CcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         29 HPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        29 ~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      ++..+.+....  ..|||.+.      .+++|..|.++|+|+.+ | |+.||.|++|||.++.++++.++..+++..+..
T Consensus         2 ~~~~v~~~~~~~~~~~g~~~~------~gv~V~~v~~~s~A~~a-G~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~   74 (92)
T 3cyy_A            2 KPTKVTLVKSAKNEEYGLRLA------SHIFVKEISQDSLAARD-GNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGK   74 (92)
T ss_dssp             CCEEEEEECSSTTSCCCEEEE------EEEEEEEECTTCHHHHS-CCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTE
T ss_pred             CcEEEEEEeCCCCCCCCEEEe------CCEEEEEECCCChHHhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCc
Confidence            35567776644  57999876      25899999999999999 7 999999999999999988999999999888788


Q ss_pred             EEEEEEECCc
Q psy12579        106 VKLVVRYTPK  115 (138)
Q Consensus       106 v~l~v~r~~~  115 (138)
                      +.+++.|++.
T Consensus        75 v~l~v~r~g~   84 (92)
T 3cyy_A           75 LKMVVQRDER   84 (92)
T ss_dssp             EEEEEEC---
T ss_pred             EEEEEEeCCc
Confidence            9999988764

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.40  E-value=1.4e-12  Score=83.66  Aligned_cols=88  Identities=30%  Similarity=0.441  Sum_probs=75.5

Q ss_pred             CCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHHHhC-C
Q psy12579         27 HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGL-KRGDQLLSVNGVSVEGEDHGKAVELLKQA-Q  103 (138)
Q Consensus        27 ~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl-~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~  103 (138)
                      ..+.+.|++.++. .+|||++....+ ..+++|..|.++|||+++ |+ +.||+|++|||..+.++++.++..+++.. +
T Consensus         6 ~~~~~~v~l~~~~~~glG~~~~~~~~-~~~~~V~~V~~~spA~~a-Gll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g   83 (127)
T 1b8q_A            6 EPNVISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQS-GLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS   83 (127)
T ss_dssp             CCCSEEEEEECTTTSCCSCCEEECTT-SSCEEECCCSSSSSHHHH-SSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCS
T ss_pred             CCceEEEEEEeCCCCcEeEEEEecCC-CCCEEEEEeCCCCHHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            3567889998876 799999987542 357999999999999999 77 99999999999999998899999999874 5


Q ss_pred             CeEEEEEEECCch
Q psy12579        104 RSVKLVVRYTPKV  116 (138)
Q Consensus       104 ~~v~l~v~r~~~~  116 (138)
                      ..+.|++.|++..
T Consensus        84 ~~v~l~v~R~g~~   96 (127)
T 1b8q_A           84 ETHVVLILRGPEG   96 (127)
T ss_dssp             SCEEEEEECCCCS
T ss_pred             CeEEEEEEeCCce
Confidence            7899999988653

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.40  E-value=3.5e-12  Score=102.53  Aligned_cols=95  Identities=39%  Similarity=0.740  Sum_probs=83.3

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      .++.|.|.+...+|||++.++.+ ..+++|..|.++|+|+++|.|+.||+|++|||.++.++++.++..+++..+..+.|
T Consensus       307 ~~~~v~l~~~~~~lG~~i~~~~~-~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~L  385 (721)
T 2xkx_A          307 EPRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTI  385 (721)
T ss_pred             ceEEEEEEECCCCccEEEeccCC-CCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEE
Confidence            56788898888899999987643 45899999999999999944999999999999999999999999999999999999


Q ss_pred             EEEECCchHHHHHHHh
Q psy12579        109 VVRYTPKVLEEMEMRF  124 (138)
Q Consensus       109 ~v~r~~~~~~~~~~~~  124 (138)
                      ++.|++..+..++.++
T Consensus       386 ~v~r~~~~~~~~~~~~  401 (721)
T 2xkx_A          386 IAQYKPEEYSRFEAKI  401 (721)
T ss_pred             EEEeCchhhhhhhhhh
Confidence            9999998877665544

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.37  E-value=9.9e-12  Score=74.92  Aligned_cols=79  Identities=16%  Similarity=0.262  Sum_probs=64.9

Q ss_pred             EEEEecCC---CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeE
Q psy12579         32 VVELPKTD---EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSV  106 (138)
Q Consensus        32 ~v~l~~~~---~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v  106 (138)
                      .+.+.+..   ..|||++...   ..+++|..|.++|||+.+ ||+.||.|++|||.++.+.++.++..++..  .+..+
T Consensus         6 ~~~~~~~~~~~~~lG~~~~~~---~~g~~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v   81 (90)
T 2eaq_A            6 RISINQTPGKSLDFGFTIKWD---IPGIFVASVEAGSPAEFS-QLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHL   81 (90)
T ss_dssp             EEEEECCTTCSSCCSEEEEEE---TTEEEEEEECTTSHHHHT-TCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEE
T ss_pred             EEEEEecCCCCCcccEEEEec---CCCEEEEEECCCChHHHc-CCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEE
Confidence            35555433   3699998753   357999999999999999 999999999999999977788888888875  47889


Q ss_pred             EEEEEECC
Q psy12579        107 KLVVRYTP  114 (138)
Q Consensus       107 ~l~v~r~~  114 (138)
                      .|++.|++
T Consensus        82 ~l~v~R~g   89 (90)
T 2eaq_A           82 VMDVRRYG   89 (90)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEeCC
Confidence            99998864

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.35  E-value=8.2e-12  Score=85.74  Aligned_cols=87  Identities=38%  Similarity=0.700  Sum_probs=73.0

Q ss_pred             cEEEEEecCCCCcCeEEeccCCC----CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         30 PRVVELPKTDEGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        30 ~~~v~l~~~~~~~G~~l~~~~~~----~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ...+.+.+....|||.+.++...    ..+++|..|.++++|+++ | |+.||.|++|||.++.++++.++..+++..+.
T Consensus       107 ~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~a-G~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~  185 (200)
T 2qt5_A          107 TVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADRE-GTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQ  185 (200)
T ss_dssp             EEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHH-CCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCS
T ss_pred             EEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECCCChHHHc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            34556666667899999876432    347899999999999999 6 99999999999999998899999999998888


Q ss_pred             eEEEEEEECCchH
Q psy12579        105 SVKLVVRYTPKVL  117 (138)
Q Consensus       105 ~v~l~v~r~~~~~  117 (138)
                      .+.|++.|++..+
T Consensus       186 ~v~l~v~R~~~~~  198 (200)
T 2qt5_A          186 EATLLIEYDVSVM  198 (200)
T ss_dssp             EEEEEEEEEEEC-
T ss_pred             eEEEEEEECCccC
Confidence            9999999986543

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.34  E-value=1.5e-11  Score=84.67  Aligned_cols=81  Identities=26%  Similarity=0.330  Sum_probs=68.6

Q ss_pred             EEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579         31 RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV  109 (138)
Q Consensus        31 ~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~  109 (138)
                      .++.+.+.. .+|||++...   ..+++|..|.++|+|+++|+|+.||+|++|||.++.++++.++..+++..+..+.|+
T Consensus       115 ~~v~l~~~~~~~lG~~~~~~---~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~  191 (206)
T 3r0h_A          115 FNVDLMKKAGKELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSME  191 (206)
T ss_dssp             EEEEEECCTTCCCCEEEEEC---SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEE
T ss_pred             EEEEEecCCCCccCeEEEcC---CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            445555544 5799999854   357999999999999999339999999999999999999999999999988899999


Q ss_pred             EEECC
Q psy12579        110 VRYTP  114 (138)
Q Consensus       110 v~r~~  114 (138)
                      |.|..
T Consensus       192 V~R~~  196 (206)
T 3r0h_A          192 VTRPK  196 (206)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            98864

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.34  E-value=2.8e-11  Score=80.88  Aligned_cols=82  Identities=29%  Similarity=0.437  Sum_probs=69.7

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCe
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~  105 (138)
                      ++++.|.+.+.. ..|||.+...   ..+++|..|.++|||+++ ||+.||.|++|||..+.++++.....+++.. +..
T Consensus         3 ~~~r~v~l~k~~~~~lG~~~~~~---~~g~~V~~v~~~spA~~a-Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~   78 (166)
T 1w9e_A            3 MDPREVILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASLV-GLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEK   78 (166)
T ss_dssp             CCCEEEEEECCTTSCCSEEEEEE---TTEEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSE
T ss_pred             CCCEEEEEEeCCCCcEeEEEEeC---CCCEEEEEECCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCE
Confidence            578999999966 5799999874   357999999999999999 8999999999999999999886667777664 568


Q ss_pred             EEEEEEEC
Q psy12579        106 VKLVVRYT  113 (138)
Q Consensus       106 v~l~v~r~  113 (138)
                      +.+++++.
T Consensus        79 v~l~vr~~   86 (166)
T 1w9e_A           79 ITMTIRDR   86 (166)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEcC
Confidence            99999554

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.32  E-value=3.6e-11  Score=70.78  Aligned_cols=67  Identities=27%  Similarity=0.508  Sum_probs=59.3

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEEC
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT  113 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~  113 (138)
                      ..|||.+..      +++|..|.++++|+++ | |+.||.|++|||.++.++++.++..+++..+..+.+++.|+
T Consensus        13 ~~~g~~~~~------gv~V~~v~~~s~A~~a-G~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A           13 EEYGLRLAS------HIFVKEISQDSLAARD-GNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             CCCCEEEEE------EEEEEEECTTSHHHHH-SSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             CCCCEEEeC------CEEEEEECCCChHHHC-CCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            579998763      5899999999999999 7 99999999999999998899999999988777888988775

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.31  E-value=2.1e-11  Score=77.36  Aligned_cols=87  Identities=21%  Similarity=0.345  Sum_probs=69.0

Q ss_pred             CCcEEEEEec---C-CCCcCeEEeccC---CCCCCeEEEEEcC--CChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579         28 AHPRVVELPK---T-DEGLGFNVMGGK---EQNSPIYISRIIP--GGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL   98 (138)
Q Consensus        28 ~~~~~v~l~~---~-~~~~G~~l~~~~---~~~~~v~V~~v~~--gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~   98 (138)
                      ..+++|++..   . .+.|||.+....   +...+++|..|.+  ++||+++ ||+.||+|++|||..+.++++.++..+
T Consensus        11 ~~~~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~a-GL~~GD~Il~Vng~~v~~~~~~dl~~~   89 (118)
T 2yub_A           11 QLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRN-AIHPGDRILEINGTPVRTLRVEEVEDA   89 (118)
T ss_dssp             CSCCEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHH-HCCTTCCEEEESSSBTTTSCHHHHHHH
T ss_pred             cCCceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHc-CCCCCCEEEEECCEECCCcCHHHHHHH
Confidence            3456666655   2 235777766322   1246799999999  9999999 999999999999999999988999999


Q ss_pred             HHhCCCeEEEEEEECCc
Q psy12579         99 LKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        99 l~~~~~~v~l~v~r~~~  115 (138)
                      +...+..+.|+|.|++.
T Consensus        90 l~~~g~~v~l~v~R~g~  106 (118)
T 2yub_A           90 IKQTSQTLQLLIEHDPV  106 (118)
T ss_dssp             HHCCSSCEEEEEEECSS
T ss_pred             HHhCCCEEEEEEEECCE
Confidence            88777789999998864

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.25  E-value=2.5e-11  Score=77.53  Aligned_cols=85  Identities=27%  Similarity=0.532  Sum_probs=68.1

Q ss_pred             CCcEEEEEecCC--CCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         28 AHPRVVELPKTD--EGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        28 ~~~~~v~l~~~~--~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      ...+.+.+.+.+  .+|||++......  ..+++|..|.+++||+++ | |+.||+|++|||..+.  ++.++..+++..
T Consensus        18 ~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~a-G~l~~GD~I~~ing~~v~--~~~~~~~~l~~~   94 (124)
T 1wh1_A           18 LELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKD-GRIREGDRIIQINGIEVQ--NREEAVALLTSE   94 (124)
T ss_dssp             CEECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHT-CCCCTTCEEEEESSCBCC--SHHHHHHHHTCS
T ss_pred             ceEEEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHc-CCCCCCCEEEEECCEECC--CHHHHHHHHHhC
Confidence            444456665544  4799999875421  357999999999999999 7 9999999999999996  478888888774


Q ss_pred             -CCeEEEEEEECCc
Q psy12579        103 -QRSVKLVVRYTPK  115 (138)
Q Consensus       103 -~~~v~l~v~r~~~  115 (138)
                       +..+.|+|.|+..
T Consensus        95 ~g~~v~l~v~R~g~  108 (124)
T 1wh1_A           95 ENKNFSLLIARPEL  108 (124)
T ss_dssp             SCCSCCEEEEECSS
T ss_pred             CCCEEEEEEEECCE
Confidence             6789999999864

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.18  E-value=4e-11  Score=90.18  Aligned_cols=93  Identities=29%  Similarity=0.392  Sum_probs=75.2

Q ss_pred             cCCCCCcEEEEEecC-CCCcCeEEeccCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579         24 SEGHAHPRVVELPKT-DEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK  100 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~-~~~~G~~l~~~~~--~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~  100 (138)
                      .......+.|.+.+. +.+|||++.+...  ...+++|..|.++|||+++|+|+.||+|++|||.++.++++.++..+++
T Consensus       199 ~~~~~~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~  278 (388)
T 3suz_A          199 FSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIK  278 (388)
T ss_dssp             TCCSSCCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTT
T ss_pred             hcccccceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHH
Confidence            344456788999886 5789999987431  1235899999999999999449999999999999999999999999998


Q ss_pred             hC--CCeEEEEEEECCch
Q psy12579        101 QA--QRSVKLVVRYTPKV  116 (138)
Q Consensus       101 ~~--~~~v~l~v~r~~~~  116 (138)
                      ..  +..+.|++.|.+..
T Consensus       279 ~~~~~~~v~l~v~r~~~~  296 (388)
T 3suz_A          279 GLKNQTQVKLNIVSCPPV  296 (388)
T ss_dssp             TCTTCSCEEEEEEECCSC
T ss_pred             hccCCCcccccccccccc
Confidence            75  45699999988654

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.17  E-value=4.3e-10  Score=76.91  Aligned_cols=83  Identities=34%  Similarity=0.542  Sum_probs=69.0

Q ss_pred             EEEEEecC-CCCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCC-CCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         31 RVVELPKT-DEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGG-LKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        31 ~~v~l~~~-~~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~g-l~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      ..+.+.+. ...|||++......  ..+++|..|.++++|+++ | |+.||.|++|||.++.++++.++..+++..+..+
T Consensus       109 ~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~a-G~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v  187 (196)
T 1p1d_A          109 FHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRT-GTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLV  187 (196)
T ss_dssp             EEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHT-SCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCE
T ss_pred             EEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhc-CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEE
Confidence            44555533 35799999764321  357999999999999999 7 9999999999999999888999999998888899


Q ss_pred             EEEEEECC
Q psy12579        107 KLVVRYTP  114 (138)
Q Consensus       107 ~l~v~r~~  114 (138)
                      .|++.|+.
T Consensus       188 ~l~v~R~~  195 (196)
T 1p1d_A          188 KLKIRKDE  195 (196)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEeCC
Confidence            99998874

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.89  E-value=3e-08  Score=63.94  Aligned_cols=59  Identities=14%  Similarity=0.144  Sum_probs=50.7

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ..+++|..|.++|||+ + ||+.||.|++|||..+.+  ..++..++..  .+..+.+++.|++.
T Consensus        56 ~~g~~V~~V~~~spA~-a-GL~~GD~I~~inG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~  116 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-G-HLEKYDVITKVDDKEIAS--STDLQSALYNHSIGDTIKITYYRNGK  116 (134)
T ss_dssp             CSCEEEEECSTTSGGG-T-TSCSSCEEEEETTEECCC--HHHHHHHHHHSSTTCEEEEEEEETTE
T ss_pred             CCCEEEEEECCCCchH-H-CCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence            4679999999999999 8 999999999999999965  4677777766  47899999999864

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.85  E-value=2.6e-08  Score=62.24  Aligned_cols=59  Identities=24%  Similarity=0.425  Sum_probs=51.5

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      ..+++|..|.++|||+.+ ||+.||.|++|||..+.+  ..++..++.. +..+.+++.|++.
T Consensus        34 ~~gv~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~   92 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRA-GLRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRE   92 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEEEEETTE
T ss_pred             CCCeEEEEeCCCChHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence            467999999999999999 999999999999999964  5777777776 6889999999864

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.80  E-value=6e-08  Score=59.39  Aligned_cols=60  Identities=15%  Similarity=0.254  Sum_probs=50.9

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV  116 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~  116 (138)
                      ..+++|..|.++|||+ + ||+.||.|++|||..+.+  ..++..++..  .+..+.+++.|++..
T Consensus         6 ~~Gv~V~~V~~~spA~-~-GL~~GD~I~~Ing~~v~~--~~dl~~~l~~~~~g~~v~l~v~R~g~~   67 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAA-D-VLHAGDLITEIDGNAFKS--SQEFIDYIHSKKVGDTVKINYKHGDKN   67 (100)
T ss_dssp             CCCEEEEEECTTSGGG-G-TCCTTCEEEEETTBCCSS--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             CCCEEEEEeCCCCchH-H-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            4579999999999999 6 999999999999999955  5777777775  468899999998643

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.79  E-value=1.8e-08  Score=69.58  Aligned_cols=71  Identities=17%  Similarity=0.193  Sum_probs=51.9

Q ss_pred             CeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCC-CEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12579         43 GFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRG-DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP  114 (138)
Q Consensus        43 G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~g-D~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~  114 (138)
                      |++...+.....|++|..|.++|||+++ ||+.| |+|++|||..+.++.......+....+..+.+++.|..
T Consensus         5 ~~~~~~~~~~~~G~~V~~V~~~SpA~~A-GL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   76 (209)
T 3rle_A            5 SQSVEIPGGGTEGYHVLRVQENSPGHRA-GLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSSK   76 (209)
T ss_dssp             ---CCCTTSSSEEEEEEEECTTSHHHHT-TCCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEETT
T ss_pred             hhhhhccCCCCCEEEEEEECCCCHHHHC-CCCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEecC
Confidence            3444333333567999999999999999 99999 99999999999887544332222345788999998864

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.75  E-value=2.5e-07  Score=61.48  Aligned_cols=76  Identities=21%  Similarity=0.351  Sum_probs=62.2

Q ss_pred             CcEEEEEecC-CCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579         29 HPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK  107 (138)
Q Consensus        29 ~~~~v~l~~~-~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~  107 (138)
                      +.+++.+.+. ...|||.+..      + +|..+.++++|+.+ ||+.||.|++||+.++.++.+..+...+...+..+.
T Consensus        88 ~~~~v~l~~~~~~~lG~~~~~------g-~v~~v~~~s~a~~a-Gl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~  159 (166)
T 1w9e_A           88 FERTITMHKDSTGHVGFIFKN------G-KITSIVKDSSAARN-GLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVT  159 (166)
T ss_dssp             TCEEEEEECCTTSCCSEEEET------T-EEEEECTTSHHHHT-TCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred             CcEEEEEecCCCCcEeEEEeC------C-EEEEEccCCHHHHc-CCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEE
Confidence            4455666543 3568888872      3 89999999999999 899999999999999999999998888888888877


Q ss_pred             EEEEE
Q psy12579        108 LVVRY  112 (138)
Q Consensus       108 l~v~r  112 (138)
                      +.+..
T Consensus       160 l~v~~  164 (166)
T 1w9e_A          160 ITIMP  164 (166)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77653

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.74  E-value=6.6e-08  Score=60.28  Aligned_cols=59  Identities=25%  Similarity=0.442  Sum_probs=50.4

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      ..+++|..|.+++||+.+ ||+.||.|++|||..+.+  ..++...+. .+..+.+++.|++.
T Consensus        34 ~~gv~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~-~g~~v~l~v~R~g~   92 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRG-GIQDGDIIVKVNGRPLVD--SSELQEAVL-TESPLLLEVRRGND   92 (112)
T ss_dssp             CSSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHHH-HCSSEEEEEEETTE
T ss_pred             CCCeEEEEECCCChHHHC-CCCCCCEEEEECCEECCC--HHHHHHHHh-CCCeEEEEEEECCE
Confidence            457999999999999999 999999999999999965  567776664 47789999998864

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.74  E-value=9.6e-08  Score=71.70  Aligned_cols=75  Identities=24%  Similarity=0.457  Sum_probs=62.4

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK  115 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~  115 (138)
                      .++|+.+........+++|..|.+++||+++ ||+.||.|++|||.++.++...++..+++. .+..+.|+|.|.+.
T Consensus        85 ~giG~~~~~~~~~~~~~~V~~v~~~spA~~a-Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~  160 (388)
T 1fc6_A           85 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKA-GARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA  160 (388)
T ss_dssp             BBCSEEEEECTTCSSCEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEEEEEEEeecCCCcEEEEEeCCCChHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            4789988753111357999999999999999 999999999999999999888888888875 46789999998764

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.72  E-value=4.2e-08  Score=58.55  Aligned_cols=58  Identities=17%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ++.|..+.++++|+++ ||+.||.|++|||..+.+  ..++..++..  .+..+.+++.|++.
T Consensus        20 G~~V~~~~~~s~A~~a-Gl~~GD~I~~ing~~v~~--~~d~~~~~~~~~~g~~v~l~v~R~g~   79 (87)
T 2i6v_A           20 GYRVSPGKDPVLFESI-GLQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDGQ   79 (87)
T ss_dssp             EEEEEECSCHHHHHHT-TCCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETTE
T ss_pred             EEEEEeCCCCCHHHHC-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            4677778888888999 999999999999999965  4666666654  46789999999864

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.71  E-value=9.1e-08  Score=58.08  Aligned_cols=56  Identities=16%  Similarity=0.192  Sum_probs=47.7

Q ss_pred             eEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-C-CeEEEEEEECC
Q psy12579         56 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-Q-RSVKLVVRYTP  114 (138)
Q Consensus        56 v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~-~~v~l~v~r~~  114 (138)
                      .+|..|.++|||+.+ ||+.||+|++|||..+.+  +.++...+... + ..+.+++.|+.
T Consensus         4 p~V~~V~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~d~~~~l~~~~~~~~v~l~v~R~g   61 (95)
T 3id1_A            4 PVVGEIAANSIAAEA-QIAPGTELKAVDGIETPD--WDAVRLQLVDKIGDESTTITVAPFG   61 (95)
T ss_dssp             CBEEEECTTSHHHHT-TCCTTCEEEEETTEECSS--HHHHHHHHHHTTTCSEEEEEEECTT
T ss_pred             CEEEeeCCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHHhcCCCcEEEEEEECC
Confidence            478899999999999 999999999999999965  57777777653 3 68999999986

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.71  E-value=5.2e-08  Score=59.04  Aligned_cols=60  Identities=17%  Similarity=0.364  Sum_probs=50.7

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV  116 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~  116 (138)
                      ..+++|..|.++|||+.  +|+.||.|++|||.++.+  ..++..++...  +..+.+++.|++..
T Consensus         4 ~~Gv~V~~V~~~spA~~--GL~~GD~Il~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~   65 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG--RLEAGDRIAAIDGQPINT--SEQIVSYVREKQAGDRVRVTFIRDRKQ   65 (94)
T ss_dssp             CCCEECCCCCTTSTTBT--TBCTTCEEEEETTBCCCC--HHHHHHHHHHSCTTCCEEEEEEETTEE
T ss_pred             CCcEEEEEECCCChHHh--CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            45789999999999986  699999999999999965  57777777764  78999999998743

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.70  E-value=1.2e-08  Score=61.68  Aligned_cols=58  Identities=21%  Similarity=0.350  Sum_probs=49.1

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEECCch
Q psy12579         55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYTPKV  116 (138)
Q Consensus        55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~~~~  116 (138)
                      |++|..|.++|||+.  +|+.||.|++|||.++.+  ..++..++...  +..+.|++.|++..
T Consensus         2 Gv~V~~V~~~spA~~--GL~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~   61 (91)
T 2kjp_A            2 GIYASSVVENMPAKG--KIEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIEREEKE   61 (91)
T ss_dssp             CSSCCCCCCSSCCSS--CCCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESSSCE
T ss_pred             ceEEEEECCCChHHH--cCCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            578888999999987  699999999999999965  57778888764  78899999998643

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.68  E-value=7.6e-08  Score=57.70  Aligned_cols=58  Identities=21%  Similarity=0.350  Sum_probs=48.7

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeEEEEEEECCc
Q psy12579         55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVRYTPK  115 (138)
Q Consensus        55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~  115 (138)
                      +++|..|.++++|+.+ ||+.||.|++|||..+.+  ..++...+... +..+.+++.|++.
T Consensus         5 ~~~V~~v~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~R~g~   63 (91)
T 2zpm_A            5 EPVLENVQPNSAASXA-GLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGS   63 (91)
T ss_dssp             -CBCSEECTTSHHHHT-TCCTTCEEEEETTEECCC--HHHHHHHHHHCTTCCEEEEEEETTE
T ss_pred             CeEEEEECCCChHHhc-CCCCCCEEEEECCeEcCC--HHHHHHHHhcCCCCeEEEEEEECCe
Confidence            3678899999999998 999999999999999965  57777777654 6789999998864

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.59  E-value=4.8e-07  Score=66.13  Aligned_cols=60  Identities=18%  Similarity=0.288  Sum_probs=52.2

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ..+++|..|.+++||+++ ||+.||.|++|||..+.+  ..++..++..  .+..+.|++.|++.
T Consensus       243 ~~g~~V~~V~~~spA~~a-GL~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~  304 (318)
T 1te0_A          243 LQGIVVNEVSPDGPAANA-GIQVNDLIISVDNKPAIS--ALETMDQVAEIRPGSVIPVVVMRDDK  304 (318)
T ss_dssp             CCCEEEEEECTTSTTTTT-CCCTTCCEEEETTEECCC--HHHHHHHHHTSCTTCEEEEEEESSSC
T ss_pred             CCcEEEEEeCCCChHHHC-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            457999999999999999 999999999999999965  5777777775  47899999999864

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.58  E-value=7.6e-09  Score=77.76  Aligned_cols=66  Identities=29%  Similarity=0.507  Sum_probs=0.0

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEEC
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYT  113 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~  113 (138)
                      .+|||.+.+       .+|..|.++|+|+++ ||++||+|++|||.++.+.++.++..+++..+..+.|++...
T Consensus       308 ~~lG~~i~~-------g~I~~V~~gs~A~~a-GL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p~  373 (388)
T 3suz_A          308 YQLGFSVQN-------GIICSLMRGGIAERG-GVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMPA  373 (388)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             CccceEEec-------CEEEEeecCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEec
Confidence            457777654       288999999999999 799999999999999999999999999999888888888643

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.57  E-value=3.1e-07  Score=56.65  Aligned_cols=58  Identities=17%  Similarity=0.217  Sum_probs=45.6

Q ss_pred             CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         55 PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        55 ~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ++.|....++++|+++ ||+.||.|++|||.++.++  .++..++..  .+..+.+++.|++.
T Consensus        38 G~~V~~~~pas~A~~a-Gl~~GDvI~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~   97 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESI-GLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQ   97 (105)
T ss_dssp             EEEEEECSCTHHHHHH-TCCTTCEEEEETTEETTST--THHHHHHHHHTTCSEEEEEEEETTE
T ss_pred             EEEEecCCCCCHHHHc-CCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCeEEEEEEECCE
Confidence            3567777777788999 9999999999999999776  444455543  46789999999864

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.56  E-value=8.1e-08  Score=72.49  Aligned_cols=72  Identities=24%  Similarity=0.412  Sum_probs=55.2

Q ss_pred             CCcCeEEeccCCCCC--CeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579         40 EGLGFNVMGGKEQNS--PIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~--~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      .||||.+........  .++|..|.++|||+++ ||+.||+|++|||..+.++.   +..+++..+..+.|++.|+..
T Consensus        74 ~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~A-GL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~g~  147 (403)
T 3k50_A           74 YGFDYTLYKVLDNDTAYNALISYVVPGSPAEEA-GLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKEVV  147 (403)
T ss_dssp             CSEEEEEEECTTCSSCEEEEEEEECTTSHHHHT-TCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEEEC
T ss_pred             cceEEEEEEcCCCCcceeEEEEEeCCCChHHHc-CCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeCCc
Confidence            456666664332122  3789999999999999 99999999999999998874   445555567789999988754

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.56  E-value=7.3e-07  Score=65.28  Aligned_cols=71  Identities=18%  Similarity=0.317  Sum_probs=56.3

Q ss_pred             CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEE-CCc
Q psy12579         41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRY-TPK  115 (138)
Q Consensus        41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r-~~~  115 (138)
                      .+|+.+... +...+++|..|.+++||+++ ||+.||.|++|||..+.+  ..+...++..  .+..+.|++.| ++.
T Consensus       230 ~lGi~~~~~-~~~~g~~V~~v~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~~g~  303 (324)
T 1y8t_A          230 SLGVQVTND-KDTLGAKIVEVVAGGAAANA-GVPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVALTFQDPSGG  303 (324)
T ss_dssp             ECCEEEESC-SSSSSEEEEEECTTSTTTTT-TCCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEECSSCC
T ss_pred             ccceEeeec-cCCCceEEEEECCCChHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCCC
Confidence            366666532 12457999999999999999 999999999999999965  4677777764  47889999999 654

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.52  E-value=5e-07  Score=66.86  Aligned_cols=61  Identities=23%  Similarity=0.385  Sum_probs=52.9

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV  116 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~  116 (138)
                      ..+++|..|.++|||+++ ||+.||.|++|||..+.+  ..+...++..  .+..+.|++.|++..
T Consensus       262 ~~G~~V~~V~~~spA~~a-GL~~GDvI~~ing~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g~~  324 (345)
T 3stj_A          262 QRGAFVSEVLPGSGSAKA-GVKAGDIITSLNGKPLNS--FAELRSRIATTEPGTKVKLGLLRNGKP  324 (345)
T ss_dssp             CSSEEEEEECTTSHHHHH-TCCTTCEECEETTEECSC--HHHHHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             CceEEEEEeccCChHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence            357899999999999999 999999999999999964  5777777765  578999999998753

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.50  E-value=6.9e-07  Score=68.05  Aligned_cols=60  Identities=20%  Similarity=0.300  Sum_probs=53.4

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV  116 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~  116 (138)
                      .+++|..|.++++|+++ ||+.||.|++|||.++.+  ..++..+++..+..+.|+|.|+...
T Consensus       363 ~gv~V~~V~~~spA~~a-GL~~GD~I~~vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~~  422 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQA-GLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGNES  422 (436)
T ss_pred             CCEEEEEeCCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCeEEEEEEECCEE
Confidence            47999999999999999 899999999999999954  6888899988777899999998653

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.48  E-value=4.4e-07  Score=71.64  Aligned_cols=69  Identities=12%  Similarity=0.216  Sum_probs=55.9

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ..+|+.+...   ..+++|..|.++|||+++ ||++||+|++|||..+..   .+...++..  .|..+.|+|.|++.
T Consensus       485 ~~lG~~~~~~---~~gv~V~~V~~~spA~~A-GL~~GD~I~aInG~~v~~---~~l~~~l~~~~~g~~v~l~v~R~g~  555 (597)
T 4fgm_A          485 VNFGAKYKAS---PQGLDVLNVYHDESAYHA-GLSAGDKIIAIDHLQATE---QSVKRILERYIPGDTVTIHAFRRDE  555 (597)
T ss_dssp             CCCSEEEEEE---TTEEEEEEECTTSHHHHH-TCCTTCEEEEETTEECCT---TTHHHHHTTCCTTCEEEEEEEETTE
T ss_pred             cccceEEecc---CCeEEEEEeCCCChHHHC-CCCCCCEEEEECCEECCH---HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            3688888653   346999999999999999 999999999999999943   344555554  57899999999864

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.44  E-value=9.9e-07  Score=64.70  Aligned_cols=58  Identities=24%  Similarity=0.428  Sum_probs=51.0

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      .+++|..|.+++||+++ ||+.||.|++|||..+.+  ..+...+++. +..+.|++.|++.
T Consensus       256 ~gv~V~~V~~~spA~~a-Gl~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~v~R~g~  313 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRA-GLRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGRE  313 (325)
T ss_dssp             SCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEEEEETTE
T ss_pred             CCeEEEEeCcCChHHHC-CCCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEEEEECCE
Confidence            57999999999999999 999999999999999955  5777777765 6789999999864

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.43  E-value=1.2e-06  Score=55.83  Aligned_cols=58  Identities=19%  Similarity=0.287  Sum_probs=48.6

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ..+++|..|.+++||+.+  |+.||.|++|||..+.+  ..++...+..  .+..+.+++ |++.
T Consensus        24 ~~gv~V~~V~~~spA~~a--L~~GD~Il~InG~~v~~--~~dl~~~l~~~~~g~~v~l~V-R~g~   83 (125)
T 2hga_A           24 PDGVQIDSVVPGSPASKV--LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITT-DQGT   83 (125)
T ss_dssp             CCCEEEEEECSSSGGGGT--SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEE-TTEE
T ss_pred             CCceEEEEECCCChHHHh--cCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEE-ECCE
Confidence            457999999999999987  99999999999999965  5677777764  477899999 7654

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.41  E-value=8.9e-07  Score=67.44  Aligned_cols=60  Identities=23%  Similarity=0.381  Sum_probs=50.4

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ..+++|..|.++|||+++ ||+.||+|++|||..+.++  .+....+..  .+..+.|++.|++.
T Consensus       262 ~~G~~V~~V~~~spA~~a-GL~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~  323 (436)
T 4a8c_A          262 QRGAFVSEVLPGSGSAKA-GVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGK  323 (436)
T ss_pred             CcceEEEEECCCChHHHC-CCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            357999999999999999 9999999999999999765  555555554  47889999998864

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.36  E-value=1.1e-06  Score=67.32  Aligned_cols=59  Identities=15%  Similarity=0.212  Sum_probs=52.6

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      .+++|..|.++|+|+++ ||+.||.|++||+.++.+  ..++..+++..+..+.|+|.|+..
T Consensus       386 ~Gv~V~~V~~gspA~~a-GL~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g~  444 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRA-GIRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQVLRGPG  444 (451)
T ss_dssp             EEEEEEEECTTSHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEEEEETTE
T ss_pred             CceEEEEECCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEEEEECCE
Confidence            36899999999999999 899999999999999955  588888888878889999999864

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.36  E-value=1.2e-06  Score=60.41  Aligned_cols=70  Identities=17%  Similarity=0.204  Sum_probs=54.4

Q ss_pred             CcCeEEeccCC---CCCCeEEEEEcCCChhhhcCCCCC-CCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECC
Q psy12579         41 GLGFNVMGGKE---QNSPIYISRIIPGGVADRHGGLKR-GDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTP  114 (138)
Q Consensus        41 ~~G~~l~~~~~---~~~~v~V~~v~~gs~a~~~~gl~~-gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~  114 (138)
                      .+|+++.....   ...+++|..|.++|||+++ ||+. ||.|++||+. +.++  .++..+++. .+..+.|++.|..
T Consensus        96 ~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~a-Gl~~~GD~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l~v~r~~  170 (209)
T 3rle_A           96 LLGVSIRFCSFDGANENVWHVLEVESNSPAALA-GLRPHSDYIIGADTV-MNES--EDLFSLIETHEAKPLKLYVYNTD  170 (209)
T ss_dssp             SSCEEEEEEECTTGGGSCEEEEEECTTSHHHHH-TCCTTTEEEEEESSC-CCSS--SCHHHHHHHTTTSCEEEEEEETT
T ss_pred             ccceEEeecChhHccccceEEEEeCCCChHHHC-CCCCCCCEEEECCCE-eCCH--HHHHHHHHhCCCCeEEEEEEECC
Confidence            58888863211   1257999999999999999 9999 9999999997 6443  556666666 4778999998864

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.34  E-value=1e-06  Score=67.42  Aligned_cols=59  Identities=22%  Similarity=0.352  Sum_probs=51.2

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      .+++|..|.++|||+++ ||+.||+|++|||..+.+  ..+....+..  .+..+.|+|.|++.
T Consensus       282 ~G~~V~~V~~~spA~~a-GL~~GDvI~~vnG~~v~~--~~~l~~~l~~~~~g~~v~l~V~R~g~  342 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELA-GLKAGDIITQINDTKITQ--ATQVKTTISLLRVGSTVKIIVERDNK  342 (451)
T ss_dssp             CCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEEETTE
T ss_pred             ceEEEEecCCCChHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhcCCCCEEEEEEEECCE
Confidence            67999999999999999 999999999999999965  4666666664  47899999999865

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.33  E-value=2.1e-06  Score=63.56  Aligned_cols=60  Identities=28%  Similarity=0.380  Sum_probs=51.9

Q ss_pred             CCeEEEEEcCCChhhhcCCCCC-----------CCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579         54 SPIYISRIIPGGVADRHGGLKR-----------GDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV  116 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~-----------gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~  116 (138)
                      .|++|..|.+++||+++ ||+.           ||+|++|||..+.++  .+...++..  .++.+.|++.|++..
T Consensus       251 ~Gv~V~~V~~~spA~~A-Gl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~  323 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKA-GLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHK  323 (348)
T ss_dssp             SSEEEEECCSSSHHHHH-TCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSE
T ss_pred             ceEEEEEecCCChHHHc-CCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEE
Confidence            57999999999999999 9999           999999999999765  677777754  478999999998753

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.13  E-value=3.2e-07  Score=67.47  Aligned_cols=60  Identities=32%  Similarity=0.499  Sum_probs=0.0

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV  116 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~  116 (138)
                      ..+++|..|.++|||+++ ||+.||.|++|||..+.+  ..++..+++. +..+.|++.|++..
T Consensus       253 ~~g~~V~~v~~~spA~~a-Gl~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g~~  312 (332)
T 3num_A          253 ISGAYIIEVIPDTPAEAG-GLKENDVIISINGQSVVS--ANDVSDVIKR-ESTLNMVVRRGNED  312 (332)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CCceEEEEeccCCChHHc-CCCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECCEE
Confidence            357899999999999999 999999999999999955  4566666654 67899999998654

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.96  E-value=1.1e-06  Score=67.27  Aligned_cols=60  Identities=18%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      ..+++|..|.++++|+++ ||+.||.|++||+..+.+  +.++..+++.....+.|+|.|+..
T Consensus       382 ~~gv~V~~V~~gspA~~a-GL~~GDiI~~vng~~v~~--~~~l~~~l~~~~~~v~l~v~R~g~  441 (448)
T 1ky9_A          382 DQGVVVNNVKTGTPAAQI-GLKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGDS  441 (448)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CCeEEEEEecCCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHcCCCeEEEEEEECCE
Confidence            356899999999999999 999999999999999964  567777777665688888888764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.90  E-value=4.1e-05  Score=63.47  Aligned_cols=68  Identities=12%  Similarity=0.152  Sum_probs=55.4

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEcCC--------ChhhhcCC--CCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEE
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRIIPG--------GVADRHGG--LKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKL  108 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~~g--------s~a~~~~g--l~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l  108 (138)
                      .++|+.+...   +.+++|..+.++        +||+++ |  |+ ||+|++|||.++.++.  ++..+++. .+..+.|
T Consensus       737 ~g~G~~~~~~---~~~~~v~~v~~~~~~~~~~~spa~~a-g~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l  809 (1045)
T 1k32_A          737 GRIACDFKLD---GDHYVVAKAYAGDYSNEGEKSPIFEY-GIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARI  809 (1045)
T ss_dssp             CBCSEEEEEE---TTEEEEEEECBSCTTSTTCBCGGGGG-TCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEE
T ss_pred             ceecEEEEEe---CCEEEEEEecCCCcccccCCChHHHC-CCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEE
Confidence            4788888652   356899999988        999999 7  99 9999999999998774  55666665 4778999


Q ss_pred             EEEECC
Q psy12579        109 VVRYTP  114 (138)
Q Consensus       109 ~v~r~~  114 (138)
                      +|.|++
T Consensus       810 ~v~r~~  815 (1045)
T 1k32_A          810 RLSGKG  815 (1045)
T ss_dssp             EEECSS
T ss_pred             EEECCC
Confidence            998865

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.89  E-value=6.7e-06  Score=62.82  Aligned_cols=59  Identities=20%  Similarity=0.339  Sum_probs=50.4

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      .+++|..|.+++||+++ ||+.||.|++|||..+.++  .+...++..  .+..+.|++.|++.
T Consensus       286 ~G~~V~~V~~gspA~~A-GL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~  346 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKA-GIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK  346 (448)
T ss_dssp             CSEECCCCTTCSSSTTT-TCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CceEEEEeccCCHHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence            47899999999999998 9999999999999999776  566666654  47889999988764

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.60  E-value=0.0001  Score=57.54  Aligned_cols=62  Identities=21%  Similarity=0.225  Sum_probs=47.5

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCH--------HHHHHHHH--hCCCeEEEEEEECCch
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH--------GKAVELLK--QAQRSVKLVVRYTPKV  116 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~--------~~~~~~l~--~~~~~v~l~v~r~~~~  116 (138)
                      ..|++|..|.++|||++  +|+.||.|+++||..+.+...        .....++.  ..|+.+.|+|.|++..
T Consensus       276 ~~Gv~V~~V~~~spA~~--al~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~  347 (539)
T 4fln_A          276 NEGVLVRRVEPTSDASK--VLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEH  347 (539)
T ss_dssp             SBCEEEEEECTTSGGGG--TCCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEE
T ss_pred             cCceeeecccCCChHHh--CccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEE
Confidence            45899999999999985  499999999999999965321        11233343  3589999999998754

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.70  E-value=0.0069  Score=47.29  Aligned_cols=54  Identities=13%  Similarity=0.218  Sum_probs=45.7

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe-EEEEE
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS-VKLVV  110 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~-v~l~v  110 (138)
                      .+++|..|.+++++... ++..||.|++|||.++.+  ..+..++++.+.+. +.+.+
T Consensus       415 ~gVvvs~V~~~s~a~~~-g~~~gdiI~~vNg~~V~s--~~~l~~~l~~~k~~~l~~~~  469 (539)
T 4fln_A          415 QIVILSQVLANEVNIGY-EDMNNQQVLKFNGIPIRN--IHHLAHLIDMCKDKYLVFEF  469 (539)
T ss_dssp             CCEEEEEECCCGGGTTC-SSCCSEEEEEETTEECCS--HHHHHHHHHTCCSSEEEEEE
T ss_pred             eEEEEEEecCCchhhhc-CCCCCCEEEeECCEEcCC--HHHHHHHHHHcCCCeEEEEE
Confidence            46999999999999998 999999999999999955  58889999887544 45444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	138
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	2e-27
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	1e-26
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	1e-25
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	5e-25
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	5e-25
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-24
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-24
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	1e-23
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	1e-23
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	2e-23
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-23
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	5e-23
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	5e-23
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	5e-23
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	7e-23
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	9e-23
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	1e-22
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	2e-22
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	3e-22
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	3e-22
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	6e-22
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	6e-22
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	7e-22
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	8e-22
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	9e-22
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	1e-21
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	1e-21
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	2e-21
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	2e-21
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	2e-21
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	3e-21
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-21
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	4e-21
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	5e-21
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	6e-21
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	1e-20
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	2e-20
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	3e-20
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	4e-20
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	4e-20
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	5e-20
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-19
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	2e-19
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	2e-19
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	4e-19
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	4e-19
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	4e-19
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	5e-19
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	7e-19
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	2e-18
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	6e-18
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	7e-18
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	8e-18
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	9e-18
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	1e-17
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	1e-17
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-17
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	4e-17
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	2e-16
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	4e-16
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	1e-13
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	7e-09
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	4e-06
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	8e-05
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	0.001
d2i6va1	87	b.36.1.5 (A:219-305) General secretion pathway pro	0.003

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.7 bits (238), Expect = 2e-27
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 1/88 (1%)

Query: 26  GHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           G    R V + K D  GLG ++ GG+E   PI IS+I  G  AD+   L  GD +LSVNG
Sbjct: 1   GSLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60

Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVVRY 112
             +    H +AV+ LK+  + V L V+Y
Sbjct: 61  EDLSSATHDEAVQALKKTGKEVVLEVKY 88

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.8 bits (233), Expect = 1e-26
 Identities = 28/80 (35%), Positives = 48/80 (60%)

Query: 33  VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
           VEL +    LG  + G +E   PI IS +  GG+A+R G +  GD++L++N  S++G+  
Sbjct: 7   VELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPL 66

Query: 93  GKAVELLKQAQRSVKLVVRY 112
            +A+ LL+ A  +V L ++ 
Sbjct: 67  SEAIHLLQMAGETVTLKIKK 86

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.1 bits (226), Expect = 1e-25
 Identities = 37/92 (40%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR + + +   GLGFN++GG++    I+IS I+ GG AD  G L++GDQ+LSVNGV +  
Sbjct: 10  PRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRN 68

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
             H +A   LK A ++V ++ +Y P+     E
Sbjct: 69  ASHEQAAIALKNAGQTVTIIAQYKPEEYSRFE 100

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (221), Expect = 5e-25
 Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 3/85 (3%)

Query: 29  HPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
             + + L +  +GLGF+++GG      + PIY+  +   G A   G LKRGDQ+++VNG 
Sbjct: 2   QCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQ 61

Query: 86  SVEGEDHGKAVELLKQAQRSVKLVV 110
           S+EG  H +AV +LK+ + +V L+V
Sbjct: 62  SLEGVTHEEAVAILKRTKGTVTLMV 86

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (222), Expect = 5e-25
 Identities = 28/81 (34%), Positives = 50/81 (61%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGE 90
             V++ K  +G GF++ GG+E    +Y+ R+   G A R+G ++ GDQ++ +NG S    
Sbjct: 13  FTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDM 72

Query: 91  DHGKAVELLKQAQRSVKLVVR 111
            H +A+EL+K   R V+L+++
Sbjct: 73  THARAIELIKSGGRRVRLLLK 93

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (221), Expect = 1e-24
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 24  SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
           S+         L K++ G GF ++GG E +  + +  +IP G A + G ++ GD ++ +N
Sbjct: 14  SQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYIN 73

Query: 84  GVSVEGEDHGKAVELLKQAQR--SVKLVVR 111
            V V G  H   V+L +      SV LV+ 
Sbjct: 74  EVCVLGHTHADVVKLFQSVPIGQSVNLVLC 103

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (218), Expect = 2e-24
 Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 6/97 (6%)

Query: 24  SEGHAHPRVVELPKTDEGLGFNVMGGK------EQNSPIYISRIIPGGVADRHGGLKRGD 77
           S G +   V  L +++ GLGF++ GGK        ++ I++SRI  GG A R G L+ GD
Sbjct: 2   SSGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGD 61

Query: 78  QLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
           ++LS+NGV V    H  AV LL  A  ++ L++    
Sbjct: 62  RVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREA 98

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.7 bits (212), Expect = 1e-23
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 32  VVELPKTDEGLGFNVMGGK------EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
            VEL K ++GLG +++G         +   I++  +  GG A R G ++  DQ++ V+G+
Sbjct: 5   PVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGI 64

Query: 86  SVEGEDHGKAVELLKQAQRSVKLVVR 111
           S+ G     A  +L+  + +V+ V+ 
Sbjct: 65  SLVGVTQNFAATVLRNTKGNVRFVIG 90

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (213), Expect = 1e-23
 Identities = 31/97 (31%), Positives = 60/97 (61%), Gaps = 5/97 (5%)

Query: 30  PRVVELPKTD-EGLGFNVMGGKE-QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
             V  L K +  GLGF++ GG + +N  I + R+ P G+A + G +++G+++LS+NG S+
Sbjct: 9   IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSL 68

Query: 88  EGEDHGKAVELLKQAQRSVKLVV---RYTPKVLEEME 121
           +G  H  A+ +L+QA+   + V+   + TP+ + ++ 
Sbjct: 69  KGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLN 105

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (211), Expect = 2e-23
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 10/92 (10%)

Query: 30  PRVVELPKTD-EGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQL 79
           PR VEL +   + LG +++GG+         E    I+I  ++    A ++G LK GD++
Sbjct: 2   PRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 61

Query: 80  LSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           + V+G+ +    H +AVE +++A   V  +V+
Sbjct: 62  VEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQ 93

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (210), Expect = 3e-23
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 2/81 (2%)

Query: 33  VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
           V L + + G GF ++GG E   PI I  +I  G ADR G L  GD+L+ V+G+ V G+ H
Sbjct: 13  VHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH 72

Query: 93  GKAVELLKQAQRS--VKLVVR 111
              ++L+  A R+  V L VR
Sbjct: 73  RYVIDLMHHAARNGQVNLTVR 93

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.2 bits (208), Expect = 5e-23
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
              + L + + GLGF++ GG +      +  I+I++IIPGG A + G L+  D +L VN 
Sbjct: 2   YEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNE 61

Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVVR 111
           V V    H  AVE LK+A   V+L V 
Sbjct: 62  VDVREVTHSAAVEALKEAGSIVRLYVM 88

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (210), Expect = 5e-23
 Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 6/112 (5%)

Query: 4   GSPDVRASATAKATVAAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISR 60
            S D  ASA+A + V+  + +E  A    V L K   GLGF++ GGK     + P+ I+R
Sbjct: 6   SSTDSAASASAASDVSVESTAE--ATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINR 63

Query: 61  IIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVVR 111
           I  G  +++   ++ GD++L + G +++G    +A  ++K      V +V+R
Sbjct: 64  IFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIR 115

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (208), Expect = 5e-23
 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR+  L K   G GF++ G K      YI  + PG  A++  GL  GD+L+ VNG +VE 
Sbjct: 4   PRLCCLEKGPNGYGFHLHGEKG-KLGQYIRLVEPGSPAEK-AGLLAGDRLVEVNGENVEK 61

Query: 90  EDHGKAVELLKQAQRSVKLVVR 111
           E H + V  ++ A  +V+L+V 
Sbjct: 62  ETHQQVVSRIRAALNAVRLLVV 83

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (208), Expect = 7e-23
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 29  HPRVVELPKTDEGLGFNVMGGKEQN---SPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
           +   VEL +   GLG  ++ G   +     +YI  ++PG  A   G L  GD++L VNG 
Sbjct: 8   YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGS 67

Query: 86  SVEGEDHGKAVELLKQAQRSVKLVVRYTP 114
           S+ G  + +AV+L++   + ++ +V  + 
Sbjct: 68  SLLGLGYLRAVDLIRHGGKKMRFLVAKSD 96

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (206), Expect = 9e-23
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 5/84 (5%)

Query: 33  VELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           V L K  +GLGF++ GG        ++ IYI++II GG A + G L+ GD+LL+VN  ++
Sbjct: 5   VNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNL 64

Query: 88  EGEDHGKAVELLKQAQRSVKLVVR 111
           +   H +AV  LK     V L V 
Sbjct: 65  QDVRHEEAVASLKNTSDMVYLKVA 88

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 83.4 bits (206), Expect = 1e-22
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 7/88 (7%)

Query: 31  RVVELPKT-DEGLGFNVMGGKEQNSP------IYISRIIPGGVADRHGGLKRGDQLLSVN 83
            +V L KT  +  G  ++ G+ ++SP      I+I  I+P   A   G LK GD++LS+N
Sbjct: 5   HMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLN 64

Query: 84  GVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           G  V        ++L+K+A   ++L ++
Sbjct: 65  GKDVRNSTEQAVIDLIKEADFKIELEIQ 92

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (207), Expect = 2e-22
 Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           PR V++ K  E LG +++ G++    IY+S++  G +A +  GL+ GDQLL  NG+++  
Sbjct: 20  PRHVKVQKGSEPLGISIVSGEK--GGIYVSKVTVGSIAHQ-AGLEYGDQLLEFNGINLRS 76

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPKVLEEME 121
               +A  ++ Q   ++ ++ +Y P V +   
Sbjct: 77  ATEQQARLIIGQQCDTITILAQYNPHVHQLSS 108

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 3e-22
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSP-IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
             +V + K+   LG  + GG     P   I  I  GG A   G LK G  +L VNG+++ 
Sbjct: 7   GTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLR 66

Query: 89  GEDHGKAVELLKQAQRSVKLVV 110
           G++H +A  ++ +A ++     
Sbjct: 67  GKEHREAARIIAEAFKTKDRDY 88

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (204), Expect = 3e-22
 Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQNS-----PIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
              +   +  GLG  ++GGKE          YI++I+PGG A++ G L  G Q+L  NG+
Sbjct: 21  DSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGI 80

Query: 86  SVEGEDHGKAVELLKQAQRSVKLVVR 111
            +  + + +   ++ Q     ++ VR
Sbjct: 81  PLTSKTYEEVQSIISQQSGEAEICVR 106

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (202), Expect = 6e-22
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 22  AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
           + S G      +   K  EGLGF++ GG E    IY+S + PG +A++  GL+ GDQ+L 
Sbjct: 3   SGSSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEK-EGLRVGDQILR 61

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           VN  S+    H +AV+ LK +++ V  V  
Sbjct: 62  VNDKSLARVTHAEAVKALKGSKKLVLSVYS 91

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (200), Expect = 6e-22
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
              V L       GF + GGK+ N P+ ISRI PG  A +   L +GD +++++GV+ + 
Sbjct: 2   AYSVTLTG-PGPWGFRLQGGKDFNMPLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDT 59

Query: 90  EDHGKAVELLKQAQRSVKLVVRYTPK 115
             H +A   +K A  ++ L ++ + +
Sbjct: 60  MTHLEAQNKIKSASYNLSLTLQKSKR 85

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (202), Expect = 7e-22
 Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 30  PRVVELPKTD-EGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           P +VE+ KT    LG ++     +N S I I RI P  V DR G L  GD +LS++G S+
Sbjct: 16  PLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSM 75

Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTPK 115
           E     +A +LL      V+L +   P+
Sbjct: 76  EHCSLLEATKLLASISEKVRLEILPVPQ 103

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (201), Expect = 8e-22
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 29  HPRVVELPKTDEGLGFNVMGGKEQNS---PIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
           + R      +   LG  V+GGK  +      +I+++  G +AD  G L+ GD++L  NG 
Sbjct: 19  NKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGK 78

Query: 86  SVEGEDHGKAVELLKQA--QRSVKLVVR 111
            + G  + +   ++ ++  +  V+++V 
Sbjct: 79  PLPGATNEEVYNIILESKSEPQVEIIVS 106

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (200), Expect = 9e-22
 Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 30  PRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
            R+V+  K TDE +G  +   +       ++RI+ GG+  R G L  GD++  +NG+SV 
Sbjct: 2   SRLVQFQKNTDEPMGITLKMNELN--HCIVARIMHGGMIHRQGTLHVGDEIREINGISVA 59

Query: 89  GEDHGKAVELLKQAQRSVKLVVR 111
            +   +  ++L++ + S+   + 
Sbjct: 60  NQTVEQLQKMLREMRGSITFKIV 82

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (200), Expect = 1e-21
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 27  HAHPRVVELPKTDEG-LGFNVMGGKEQNSPIYISRIIPGGVADRH-GGLKRGDQLLSVNG 84
           H +  ++ +   + G  GFNV GG +Q  P+ +SR+ PG  AD     L  GDQ++ +NG
Sbjct: 6   HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 65

Query: 85  VSVEGEDHGKAVELLKQA----QRSVKLVVR--YTPKVLEE 119
             +    H + V  +K +       + L+VR      V+EE
Sbjct: 66  RDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEE 106

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.1 bits (200), Expect = 1e-21
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 9/89 (10%)

Query: 30  PRVVELPKTD-EGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSV 82
              V L K    G G  V GG++        + I IS ++PGG AD  G L+  D+++ V
Sbjct: 8   QYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMV 65

Query: 83  NGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           NG  +E   H  AV+ L+++ +   +VV+
Sbjct: 66  NGTPMEDVLHSFAVQQLRKSGKIAAIVVK 94

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.8 bits (199), Expect = 2e-21
 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 3/86 (3%)

Query: 30  PRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           PR+V L K     LGFN+ GGK     I+IS++IP   A R  GL+ GDQ+L+VN V  +
Sbjct: 16  PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHR-AGLQEGDQVLAVNDVDFQ 74

Query: 89  GEDHGKAVELLKQAQRSVKLVVRYTP 114
             +H KAVE+LK A R + + VR+  
Sbjct: 75  DIEHSKAVEILKTA-REISMRVRFFS 99

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.8 bits (199), Expect = 2e-21
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 21  FAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNS-PIYISRIIPGGVADRHGGLKRGDQL 79
           F+  +       +   K +  L   + GG +     + +S +  GG A+RHGG+ +GD++
Sbjct: 9   FSPEQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEI 68

Query: 80  LSVNGVSVEGEDHGKAVELLKQAQ----RSVKLVVRYTPKVLEEMEMRF 124
           +++NG  V      +A   L++A       + LVV   P    + E+ F
Sbjct: 69  MAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELTF 117

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (197), Expect = 2e-21
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 30  PRVVELP-KTDEGLGFNVMGGK---EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
           P ++ +  K   G+G +++  K   +    IY+  ++ GG AD  G L  GDQLLSV+G 
Sbjct: 3   PEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGR 62

Query: 86  SVEGEDHGKAVELLKQAQRSVKLVVR 111
           S+ G    +A EL+ +    V L V 
Sbjct: 63  SLVGLSQERAAELMTRTSSVVTLEVA 88

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (197), Expect = 3e-21
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 27  HAHPRVVELPKT-DEGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
           H     V L      G G  + GG       +SP  +  I P   A+R G L+ GD++LS
Sbjct: 6   HTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLS 65

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           +NG++ E     +A +LL+ A  + K+V+ 
Sbjct: 66  INGIATEDGTMEEANQLLRDAALAHKVVLE 95

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (197), Expect = 3e-21
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 23  ASEGHAHPRVVELPKTDEGLGFNVMGGK--------EQNSPIYISRIIPGGVADRHGGLK 74
           +S        + L +    LGFN++GG+          +  I++S+I+  G A + GGL+
Sbjct: 2   SSGSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ 61

Query: 75  RGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK 115
             D+++ VNG  +    H +AVE  K A+  + + V     
Sbjct: 62  IHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS 102

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.6 bits (196), Expect = 4e-21
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 8/90 (8%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQ--------NSPIYISRIIPGGVADRHGGLKRGDQLLS 81
              VEL KTD  LG +V    ++        +  IY+  IIP G A+  G + +GD++L+
Sbjct: 5   TFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLA 64

Query: 82  VNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           VNGVS+EG  H +AVE L+   + V L++ 
Sbjct: 65  VNGVSLEGATHKQAVETLRNTGQVVHLLLE 94

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.2 bits (195), Expect = 5e-21
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 30  PRVVELPKTD-EGLGFNVMGGK--EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
              V+LPK     LG  +      +   P+ IS I  G VA R G L+ GD+LL+++ + 
Sbjct: 11  TFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIR 70

Query: 87  VEGEDHGKAVELLKQAQRSVKLVVR 111
           ++      AV++L+Q +  VKL +R
Sbjct: 71  LDSCSMEDAVQILQQCEDLVKLKIR 95

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 6e-21
 Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 27  HAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGV 85
               + V L   D   LG  + GG E    IYI+ + PG  A+   GLK GDQ+L VNG 
Sbjct: 18  GGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEG-SGLKVGDQILEVNGR 76

Query: 86  SVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLEEMEMRFDKQRTARRRQPPS 137
           S     H +AV LLK + R + L V+   ++        + +  A    P S
Sbjct: 77  SFLNILHDEAVRLLKSS-RHLILTVKDVGRLPHARTTVDETKWIASSSGPSS 127

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.1 bits (192), Expect = 1e-20
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 31  RVVELPKTDEGLGFNVMGGKEQN--SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           RV+ + K + GLG  ++GG  +N    +YI  +IPGG   + G LK GDQL+S+N  S+ 
Sbjct: 10  RVITVTK-ETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMI 68

Query: 89  GEDHGKAVELLKQAQRSVKLVVRYT 113
           G    +A  ++ +A+   +      
Sbjct: 69  GVSFEEAKSIITRAKLRSESPWEIA 93

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 78.1 bits (192), Expect = 2e-20
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 11/93 (11%)

Query: 30  PRVVELPK--TDEGLGFNVMGGK---------EQNSPIYISRIIPGGVADRHGGLKRGDQ 78
            R V L K  +D+ LGF +  G          E+   I+ISR++PGG+A+  G L   D+
Sbjct: 3   HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDE 62

Query: 79  LLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           ++ VNG+ V G+   +  +++     ++ + V+
Sbjct: 63  VIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK 95

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (189), Expect = 3e-20
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 33  VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
           + +P+  +G GF +        P+ +  +  GG A+R  GL++ D +L +N   VE    
Sbjct: 1   ITIPRGKDGFGFTICCDS----PVRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEHWKC 55

Query: 93  GKAVELLKQAQRSVKLVVR 111
            +    ++     + L+V 
Sbjct: 56  VELAHEIRSCPSEIILLVW 74

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.9 bits (189), Expect = 4e-20
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)

Query: 31  RVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           ++V + K  D  LG  V   + +   + ISRI+ GG A++ G L  GD++L +NG+ + G
Sbjct: 20  KIVRIEKARDIPLGATV---RNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRG 76

Query: 90  EDHGKAVELLKQAQRSVKLVV 110
           +D  +  +LL     ++  V+
Sbjct: 77  KDVNEVFDLLSDMHGTLTFVL 97

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.7 bits (191), Expect = 4e-20
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 22  AASEGHAHPRVVELPKT-DEGLGFNVMGGK----EQNSPIYISRIIPGGVADRHGGLKRG 76
           A    H     V L      G G  + G        +SP  IS I     A+R G L+ G
Sbjct: 8   AGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIG 67

Query: 77  DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKVLE 118
           D+++++NG+  E     +A +LL+ +  + K+ +     V E
Sbjct: 68  DRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAE 109

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 5e-20
 Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 7/88 (7%)

Query: 30  PRVVELPKTDEGLGFNVMGGKEQN------SPIYISRIIPGGVADRHGGLKRGDQLLSVN 83
              + + +   GLG ++ GGK           I+ISR+   G A R  G++ GD+LL VN
Sbjct: 9   ELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAAR-AGVRVGDKLLEVN 67

Query: 84  GVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           GV+++G +H +AVE L+ A  +V++ V 
Sbjct: 68  GVALQGAEHHEAVEALRGAGTAVQMRVW 95

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 1e-19
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)

Query: 23  ASEGHAHPRVVELPKTD-EGLGFNVMGGKEQ-------NSPIYISRIIPGGVADRHGGLK 74
            S G      V + + + EG GF ++    +         P  I RII G  ADR   LK
Sbjct: 4   GSSGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLK 63

Query: 75  RGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV 116
            GD++L+VNG S+    H   V+L+K A  SV L +    ++
Sbjct: 64  VGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEEL 105

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (184), Expect = 2e-19
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 33  VELPKTD-EGLGFNVMGGK--EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           V + K   E LG  ++          + I+ ++ GG A++ G L  GDQ++S+NG S+ G
Sbjct: 2   VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVG 61

Query: 90  EDHGKAVELLKQAQRSVKLVVR 111
                   ++K  +   ++ + 
Sbjct: 62  LPLSTCQSIIKGLKNQSRVKLN 83

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.9 bits (184), Expect = 2e-19
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 29  HPRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
             + V +      GLG ++  G  Q   I+IS + PG ++    GL+ GDQ++ VNGV  
Sbjct: 8   KEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAE-VGLEIGDQIVEVNGVDF 66

Query: 88  EGEDHGKAVELLKQAQRSVKLVVR 111
              DH +AV +LK ++     +V 
Sbjct: 67  SNLDHKEAVNVLKSSRSLTISIVA 90

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (183), Expect = 4e-19
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 11/97 (11%)

Query: 23  ASEGHAHPRVVELPKTDEGLGFNVMGGKEQ--------NSPIYISRIIPGGVADRHGGLK 74
             E       V + K D  LGF++ GG           +  I+++R+ P G A +   L+
Sbjct: 5   GHELAKQEIRVRVEK-DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL--LQ 61

Query: 75  RGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
            GD+++  NG S    +HG+AV LLK  Q +V+L++ 
Sbjct: 62  PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 98

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.2 bits (182), Expect = 4e-19
 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 37  KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAV 96
                 GF + GG++ ++PI ++++   G A+    L+ GD ++++NG S E   H +A 
Sbjct: 13  AGPAPWGFRISGGRDFHTPIIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQ 71

Query: 97  ELLKQAQRSVKLVVR 111
             ++Q+   ++L + 
Sbjct: 72  SKIRQSASPLRLQLD 86

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 4e-19
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 12/101 (11%)

Query: 23  ASEGHAHP--RVVELPKTD-EGLGFNVMGGKE---------QNSPIYISRIIPGGVADRH 70
            S G + P  R + + K   E LG ++ GG            +  I+IS++ P G A R 
Sbjct: 1   GSSGSSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRD 60

Query: 71  GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR 111
           G L+ G +LL VN  S+ G  HG+AV+LL+    ++ ++V 
Sbjct: 61  GRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVC 101

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 74.2 bits (182), Expect = 5e-19
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 33  VELPK-TDEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
           V L       LG +++G   +  +  IYI  I+ GG     G ++ GD LL VN ++ E 
Sbjct: 5   VTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFEN 64

Query: 90  EDHGKAVELLKQAQRS---VKLVVR 111
             +  AV +L+        + L V 
Sbjct: 65  MSNDDAVRVLRDIVHKPGPIVLTVA 89

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.4 bits (180), Expect = 7e-19
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 30  PRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
              V L K    E  GF+V  G  +   +Y+  I P G  D  GGLK  D+LL VN V  
Sbjct: 7   LHKVTLYKDSGMEDFGFSVADGLLEK-GVYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRT 64

Query: 88  EGEDHGKAVELLKQAQRSVKLVVRYTP 114
              D    V L+ ++   + LV+   P
Sbjct: 65  RDFDCCLVVPLIAESGNKLDLVISRNP 91

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (180), Expect = 2e-18
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 7/100 (7%)

Query: 31  RVVELPKTD--EGLGFNVMGGK--EQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVS 86
             V+L + +  + LG  V      E +  IYIS I P  +A + G ++ GD+++ +NG+ 
Sbjct: 21  EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIE 80

Query: 87  VEGEDHGKAVELLKQAQ-RSVKLVVRYTPKVLEEMEMRFD 125
           V+  +   AV LL   + ++  L++      L+E  M  D
Sbjct: 81  VQNREE--AVALLTSEENKNFSLLIARPELQLDEGWMDDD 118

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.6 bits (175), Expect = 6e-18
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 14/94 (14%)

Query: 30  PRVVELPKTD-EGLGFNVMGGKEQ------------NSPIYISRIIPGGVADRHGGLKRG 76
            + V L K D EG GF + G K Q             +  Y+  +  GGVA R  GL+ G
Sbjct: 6   EKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWR-AGLRMG 64

Query: 77  DQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVV 110
           D L+ VNG +V    H + V +++Q   ++ + V
Sbjct: 65  DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKV 98

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (173), Expect = 7e-18
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 32  VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGED 91
           ++  P     LGF+V  G        I  ++ GG+A+R GG++ G +++ +NG SV    
Sbjct: 5   LIRRPDLRYQLGFSVQNG-------IICSLMRGGIAER-GGVRVGHRIIEINGQSVVATP 56

Query: 92  HGKAVELLKQAQRSVKLVV 110
           H K V +L  A   + +  
Sbjct: 57  HEKIVHILSNAVGEIHMKT 75

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (176), Expect = 8e-18
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 12/91 (13%)

Query: 33  VELPKT-DEGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSV 87
           + L  +   GLG ++ G K +    +  I+I  II GG A + G L+  DQL++VNG ++
Sbjct: 29  IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETL 88

Query: 88  EGEDHGKAVELLKQAQR-------SVKLVVR 111
            G+ + +A+E L+++          ++LV+ 
Sbjct: 89  LGKSNHEAMETLRRSMSMEGNIRGMIQLVIL 119

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.3 bits (174), Expect = 9e-18
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 7/111 (6%)

Query: 31  RVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
             V L K    GLGF V        P+ IS +I GG A++ G ++ GD +L+VN   +  
Sbjct: 3   ISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVD 61

Query: 90  EDHGKAVELLKQAQRS--VKLVVRYTPKVLEEMEMRFDKQ---RTARRRQP 135
             +  A+E+L+       V L++R        +E  F      +T R  QP
Sbjct: 62  LSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTPKTIRVTQP 112

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.8 bits (173), Expect = 1e-17
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 39  DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
               GF + GGK+ N P+ IS +  GG A +   ++ GD +LS++G+S +G  H +A   
Sbjct: 14  PAPWGFRLQGGKDFNMPLTISSLKDGGKASQ-AHVRIGDVVLSIDGISAQGMTHLEAQNK 72

Query: 99  LKQAQRSVKLVVRYTPKVLEEMEMR 123
           +K    S+ + ++      +   + 
Sbjct: 73  IKACTGSLNMTLQRASAAAKSEPVS 97

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.8 bits (173), Expect = 1e-17
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 39  DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL 98
               GF + GG + N P+ I+RI PG  A     L  GD +L+++G   E   H  A + 
Sbjct: 14  PAPWGFRLSGGIDFNQPLVITRITPGSKAAA-ANLCPGDVILAIDGFGTESMTHADAQDR 72

Query: 99  LKQAQRSVKLVVR 111
           +K A   + L + 
Sbjct: 73  IKAASYQLCLKID 85

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (170), Expect = 3e-17
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 22  AASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLS 81
           + S G A    + + K  +G GF +             R+          GL  GD ++ 
Sbjct: 3   SGSSGQAELMTLTIVKGAQGFGFTIADSPTG------QRVKQILDIQGCPGLCEGDLIVE 56

Query: 82  VNGVSVEGEDHGKAVELLKQAQR--SVKLVVR 111
           +N  +V+   H + V++LK         L++ 
Sbjct: 57  INQQNVQNLSHTEVVDILKDCPIGSETSLIIH 88

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (168), Expect = 4e-17
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 30  PRVVELPKT-DEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVE 88
           PR V L K  D  +G  +         I++  +     A    GL+ GDQ+L +NG +  
Sbjct: 3   PREVILCKDQDGKIGLRLKSIDN---GIFVQLVQANSPASL-VGLRFGDQVLQINGENCA 58

Query: 89  GEDHGKAVELLKQAQ-RSVKLVVRYTP 114
           G    KA ++LKQA    + + +R  P
Sbjct: 59  GWSSDKAHKVLKQAFGEKITMTIRDRP 85

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.7 bits (165), Expect = 2e-16
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 19  AAFAASEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQ 78
           ++ +AS+  + PR +     +  LGF + G     +P+ +  + P   A    G K GD 
Sbjct: 5   SSGSASKRWSPPRGIHFTVEEGDLGFTLRGN----TPVQVHFLDPHCSASL-AGAKEGDY 59

Query: 79  LLSVNGVSVEGEDHGKAVELLKQA-QRSVKLVV 110
           ++S+ GV  +     + ++LLK      V++ V
Sbjct: 60  IVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKV 92

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.7 bits (165), Expect = 4e-16
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 33  VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDH 92
            +L   + GLG  V+        + IS +I  G A   G L+ GD L+SV   +V G   
Sbjct: 31  TKLTVGNLGLGLVVIQNGP---YLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTL 87

Query: 93  GKAVELLKQAQR--SVKLVVR 111
            + ++LL+       +++   
Sbjct: 88  REFLKLLQNITIGTVLQIKAY 108

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (145), Expect = 1e-13
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 26  GHAHPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNG 84
           G   PR + + K +   +GF             I+ I+    A R  GL     +  +NG
Sbjct: 1   GAMDPRTITMHKDSTGHVGFIFK-------NGKITSIVKDSSAAR-NGLLTEHNICEING 52

Query: 85  VSVEGEDHGKAVELLKQAQRSVKLVV 110
            +V G    +  ++L  +   V + +
Sbjct: 53  QNVIGLKDSQIADILSTSGTVVTITI 78

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 47.7 bits (113), Expect = 7e-09
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 40  EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL 99
            G+G  +         + +    PGG A++  G + GD +++V+G +V+G       +LL
Sbjct: 5   TGVGLEITYDGGSGKDVVVLTPAPGGPAEKA-GARAGDVIVTVDGTAVKGMSLYDVSDLL 63

Query: 100 K-QAQRSVKLVVR 111
           + +A   V++V+ 
Sbjct: 64  QGEADSQVEVVLH 76

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.3 bits (94), Expect = 4e-06
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 41  GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK 100
            LG  V   K+      I  ++ GG A    G+ +G  +  V+   +   D   A    K
Sbjct: 4   SLGVQVTNDKDTL-GAKIVEVVAGGAAAN-AGVPKGVVVTKVDDRPINSADALVAAVRSK 61

Query: 101 QAQRSVKLVVR 111
               +V L  +
Sbjct: 62  APGATVALTFQ 72

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (85), Expect = 8e-05
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 47  MGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV 106
           M  K ++  + ++ +  G  A +  GLK+GD ++  N  +V  ++  +  ++L      +
Sbjct: 18  MSNKGKDQGVVVNNVKTGTPAAQ-IGLKKGDVIIGANQQAV--KNIAELRKVLDSKPSVL 74

Query: 107 KLVVR 111
            L ++
Sbjct: 75  ALNIQ 79

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.001
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 31  RVVEL-PKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG 89
            ++ L P     L        +    + I ++I G  A    GL+ GD +L++    V  
Sbjct: 7   MMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAH-RAGLRPGDVILAIGEQMV-- 63

Query: 90  EDHGKAVELLKQAQRSVKLVVR 111
           ++     E ++  Q  + + +R
Sbjct: 64  QNAEDVYEAVR-TQSQLAVQIR 84

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 56  IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEG-EDHGKAVELLKQAQRSVKLVVR 111
             +S      + +   GL+ GD  +++NG+ +          + + +       V R
Sbjct: 21  YRVSPGKDPVLFES-IGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVER 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.85
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.84
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.83
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.83
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.82
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.82
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.82
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.82
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.82
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.82
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.82
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.81
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.81
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.8
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.8
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.79
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.79
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.79
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.79
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.79
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.78
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.78
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.77
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.77
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.76
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.76
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.75
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.75
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.75
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.75
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.74
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.74
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.73
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.73
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.72
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.72
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.72
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.72
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.71
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.71
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.7
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.7
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.69
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.69
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.69
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.68
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.68
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.68
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.67
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.67
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.65
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.63
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.6
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.57
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.54
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.26
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.1
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.02
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.93
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.75
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.71
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.67
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.67

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=5.4e-21  Score=117.38  Aligned_cols=95  Identities=38%  Similarity=0.705  Sum_probs=85.2

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ..+.++|.|++.|++.+|||+|.++.+ ..++||..|.++|+|+++|.|++||+|++|||..+.++++.++..+|+.++.
T Consensus         5 ~~~~~~r~V~l~k~~~glG~~i~~~~~-~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~   83 (102)
T d1tp5a1           5 DIPREPRRIVIHRGSTGLGFNIVGGED-GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQ   83 (102)
T ss_dssp             CCCCSCEEEEEECTTSCCCEEEEECGG-GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCS
T ss_pred             CCCCCCEEEEEEeCCCcccEEEEeccC-CCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCC
Confidence            345678999999988999999998754 4689999999999999996699999999999999999999999999999999


Q ss_pred             eEEEEEEECCchHHHH
Q psy12579        105 SVKLVVRYTPKVLEEM  120 (138)
Q Consensus       105 ~v~l~v~r~~~~~~~~  120 (138)
                      .+.|++.+.++.+..+
T Consensus        84 ~v~L~v~~~~~~~~~~   99 (102)
T d1tp5a1          84 TVTIIAQYKPEEYSRF   99 (102)
T ss_dssp             EEEEEEEECHHHHHTT
T ss_pred             eEEEEEEECCcccccc
Confidence            9999999988776643

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.3e-20  Score=111.40  Aligned_cols=86  Identities=41%  Similarity=0.639  Sum_probs=78.8

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      .++++|+|.+.+ .+|||++.++.+...++||..|.++|+|+++|.|++||+|++|||.++.+++++++..+|+.++..+
T Consensus         3 ~q~r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v   82 (90)
T d1qava_           3 LQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEV   82 (90)
T ss_dssp             SSCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             ceEEEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            467899999865 6899999988777778999999999999999669999999999999999999999999999999999


Q ss_pred             EEEEEEC
Q psy12579        107 KLVVRYT  113 (138)
Q Consensus       107 ~l~v~r~  113 (138)
                      .|+++|.
T Consensus        83 ~l~v~~~   89 (90)
T d1qava_          83 VLEVKYM   89 (90)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999874

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=4.9e-20  Score=111.39  Aligned_cols=85  Identities=39%  Similarity=0.647  Sum_probs=76.9

Q ss_pred             cEEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         30 PRVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        30 ~~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      .++|+|.|++.+|||+|.++.+.     ..++||..|.++|+|+++|.|+.||+|++|||.++.+++|.++..+|+.++.
T Consensus         2 ~~~V~l~k~~~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~   81 (93)
T d1rgra_           2 YEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS   81 (93)
T ss_dssp             EEEEEEECCSSCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTT
T ss_pred             CEEEEEEeCCCcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            46899999889999999987542     4579999999999999996699999999999999999999999999999999


Q ss_pred             eEEEEEEECC
Q psy12579        105 SVKLVVRYTP  114 (138)
Q Consensus       105 ~v~l~v~r~~  114 (138)
                      .+.|+|.|..
T Consensus        82 ~v~L~v~R~~   91 (93)
T d1rgra_          82 IVRLYVMRRK   91 (93)
T ss_dssp             EEEEEEECSC
T ss_pred             EEEEEEEeCC
Confidence            9999998864

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.7e-20  Score=110.73  Aligned_cols=83  Identities=31%  Similarity=0.506  Sum_probs=76.2

Q ss_pred             cEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEE
Q psy12579         30 PRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLV  109 (138)
Q Consensus        30 ~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~  109 (138)
                      |.+|++.+ +.+|||++.++.+...+++|..+.+++||+.+ +|++||+|++|||.++.+++|.++..+++.++..+.|+
T Consensus         2 p~~V~l~~-~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~-~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~   79 (85)
T d1rgwa_           2 AYSVTLTG-PGPWGFRLQGGKDFNMPLTISRITPGSKAAQS-QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLT   79 (85)
T ss_dssp             EEEEEECC-SSCCCEEECCCGGGTSCCBEEEECTTSHHHHS-SCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEE
T ss_pred             CEEEEecC-CCCCCEEEEeecCCCCCEEEEEecCCChHHhC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            56788864 67899999998877788999999999999987 99999999999999999999999999999999999999


Q ss_pred             EEECC
Q psy12579        110 VRYTP  114 (138)
Q Consensus       110 v~r~~  114 (138)
                      |+|.+
T Consensus        80 V~R~~   84 (85)
T d1rgwa_          80 LQKSK   84 (85)
T ss_dssp             EESCC
T ss_pred             EEECC
Confidence            99875

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-19  Score=109.43  Aligned_cols=84  Identities=39%  Similarity=0.614  Sum_probs=76.3

Q ss_pred             EEEEEecCCCCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         31 RVVELPKTDEGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        31 ~~v~l~~~~~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      .+|+|.|++.+|||++.++.+.     ..++||..|.++|||+++|.|++||+|++|||.++.+++++++..+|+.+++.
T Consensus         3 ~~V~L~k~~~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~~   82 (92)
T d2fe5a1           3 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDM   82 (92)
T ss_dssp             EEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSE
T ss_pred             EEEEEEECCCccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCCE
Confidence            5789999889999999976532     45799999999999999967999999999999999999999999999999999


Q ss_pred             EEEEEEECC
Q psy12579        106 VKLVVRYTP  114 (138)
Q Consensus       106 v~l~v~r~~  114 (138)
                      +.|+|.|++
T Consensus        83 v~L~v~Rpg   91 (92)
T d2fe5a1          83 VYLKVAKPG   91 (92)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEECCC
Confidence            999999875

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2e-19  Score=111.24  Aligned_cols=87  Identities=30%  Similarity=0.567  Sum_probs=78.3

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL   99 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~--------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l   99 (138)
                      .+..+|+|.|+..+|||+|.++.+        ...++||..|.++++|+++|.|++||+|++|||.++.+++|.++..+|
T Consensus         7 g~~~~V~l~k~~~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~l   86 (107)
T d1uhpa_           7 GKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAF   86 (107)
T ss_dssp             SEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHH
T ss_pred             CCEEEEEEEECCCccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHH
Confidence            467889999988899999998753        245799999999999999977999999999999999999999999999


Q ss_pred             HhCCCeEEEEEEECC
Q psy12579        100 KQAQRSVKLVVRYTP  114 (138)
Q Consensus       100 ~~~~~~v~l~v~r~~  114 (138)
                      +.++..+.|+|.|..
T Consensus        87 k~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          87 KTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHCCSSEEEEEEECC
T ss_pred             HhCCCcEEEEEEECC
Confidence            999999999998764

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.7e-19  Score=108.42  Aligned_cols=84  Identities=37%  Similarity=0.573  Sum_probs=76.8

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK  107 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~  107 (138)
                      .-||.|+|.++..+|||++.++.. ..++||..|.++|+|+++ ||++||+|++|||.++.+++|.++..+++.+++.+.
T Consensus         2 ~~Pr~v~l~k~~~g~Gf~i~~~~~-~~~~~V~~V~~g~~A~~a-Gl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~   79 (91)
T d1g9oa_           2 MLPRLCCLEKGPNGYGFHLHGEKG-KLGQYIRLVEPGSPAEKA-GLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVR   79 (91)
T ss_dssp             CCCEEEEEECBTTBCCEEEEECTT-CSSEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEE
T ss_pred             CCCEEEEEEECCCeeeEEEEecCC-CCCEEEEEEcCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            358999999999999999998643 567999999999999999 799999999999999999999999999999999999


Q ss_pred             EEEEEC
Q psy12579        108 LVVRYT  113 (138)
Q Consensus       108 l~v~r~  113 (138)
                      |++.+.
T Consensus        80 L~v~~~   85 (91)
T d1g9oa_          80 LLVVDP   85 (91)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            998764

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.5e-19  Score=107.71  Aligned_cols=87  Identities=32%  Similarity=0.446  Sum_probs=77.8

Q ss_pred             CCCCcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         26 GHAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        26 ~~~~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      .+.+.+.++|.+..  .+|||+|.++.. ..++||..|.++|+|+++ ||+.||+|++|||.++.++++.++..+++.++
T Consensus         3 ~p~e~~~v~l~k~~~~~~~Gf~i~~~~~-~~g~~V~~V~~~g~A~~~-gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~   80 (91)
T d1m5za_           3 TPVELHKVTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLG-GLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG   80 (91)
T ss_dssp             SCCEEEEEEEECCTTCSSSSEEEEECTT-SSCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTST
T ss_pred             CCCceEEEEEEECCCCCceeEEEeccCC-CCCEEEEEECCCChhHhC-cCCCCCEEEEECCEECCCCCHHHHHHHHHCCC
Confidence            34567889999865  579999997654 457999999999999999 79999999999999999999999999999999


Q ss_pred             CeEEEEEEECC
Q psy12579        104 RSVKLVVRYTP  114 (138)
Q Consensus       104 ~~v~l~v~r~~  114 (138)
                      ..+.|+|.|+|
T Consensus        81 ~~v~L~v~R~P   91 (91)
T d1m5za_          81 NKLDLVISRNP   91 (91)
T ss_dssp             TEEEEEEEECC
T ss_pred             CEEEEEEEECc
Confidence            99999999986

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.8e-19  Score=108.36  Aligned_cols=87  Identities=32%  Similarity=0.543  Sum_probs=79.7

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      ...+|++.+.+.+|||++.++.+...++||..+.++++|++++.|++||+|++|||.++.++++.++..+|+.++..+.|
T Consensus         3 ~i~tV~l~k~~~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l   82 (95)
T d1n7ea_           3 IIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTL   82 (95)
T ss_dssp             CEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred             EEEEEEEEECCCcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            45689999988899999998877677899999999999999966999999999999999999999999999999999999


Q ss_pred             EEEECCc
Q psy12579        109 VVRYTPK  115 (138)
Q Consensus       109 ~v~r~~~  115 (138)
                      +|.|...
T Consensus        83 ~v~r~~~   89 (95)
T d1n7ea_          83 KIKKQTD   89 (95)
T ss_dssp             EEECCCC
T ss_pred             EEEECCC
Confidence            9998753

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-19  Score=111.75  Aligned_cols=89  Identities=39%  Similarity=0.696  Sum_probs=79.9

Q ss_pred             CCCCcEEEEEecCCCCcCeEEeccCC------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12579         26 GHAHPRVVELPKTDEGLGFNVMGGKE------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL   99 (138)
Q Consensus        26 ~~~~~~~v~l~~~~~~~G~~l~~~~~------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l   99 (138)
                      ....++.++|.|++.+|||+|.++.+      ...++||..|.++++|+++|.|++||+|++|||.++.++++.++..+|
T Consensus         4 g~~~~~~v~l~k~~~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l   83 (105)
T d1whaa_           4 GSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL   83 (105)
T ss_dssp             CCCEEEEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHH
T ss_pred             CCCCCEEEEEEECCCccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHH
Confidence            34678889999999999999998653      245799999999999999966999999999999999999999999999


Q ss_pred             HhCCCeEEEEEEECC
Q psy12579        100 KQAQRSVKLVVRYTP  114 (138)
Q Consensus       100 ~~~~~~v~l~v~r~~  114 (138)
                      +.++..+.|+|.|.+
T Consensus        84 ~~~~~~v~l~v~R~~   98 (105)
T d1whaa_          84 TAASPTIALLLEREA   98 (105)
T ss_dssp             TSCCSCEEEEEEECC
T ss_pred             HcCCCeEEEEEEECC
Confidence            999999999999875

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=3.4e-19  Score=108.77  Aligned_cols=87  Identities=39%  Similarity=0.614  Sum_probs=77.4

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCC--------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKE--------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELL   99 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~--------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l   99 (138)
                      .+.++|+|.|.+.+|||+|.+..+        ...++||..|.++|+|+++|.|++||+|++|||.++.+++|.++..+|
T Consensus         3 g~~~~V~L~k~~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~l   82 (99)
T d1ozia_           3 GDTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETL   82 (99)
T ss_dssp             TCEEEEEEECCSSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             CCEEEEEEEECCCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHH
Confidence            457889999988899999975432        235699999999999999966999999999999999999999999999


Q ss_pred             HhCCCeEEEEEEECC
Q psy12579        100 KQAQRSVKLVVRYTP  114 (138)
Q Consensus       100 ~~~~~~v~l~v~r~~  114 (138)
                      ++++..+.|+|+|.+
T Consensus        83 k~~~~~v~L~v~R~~   97 (99)
T d1ozia_          83 RNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHSCSEEEEEEECCC
T ss_pred             HCCCCeEEEEEEeCC
Confidence            999999999999875

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.3e-19  Score=108.94  Aligned_cols=84  Identities=31%  Similarity=0.601  Sum_probs=73.6

Q ss_pred             CcEEEEEecCC-CCcCeEEeccCCC---------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579         29 HPRVVELPKTD-EGLGFNVMGGKEQ---------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL   98 (138)
Q Consensus        29 ~~~~v~l~~~~-~~~G~~l~~~~~~---------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~   98 (138)
                      +|++|+|.|.. .+|||++.++...         ..++||..|.++|||+++|.|++||+|++|||.++.+++|.++..+
T Consensus         1 qpr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   80 (96)
T d2fcfa1           1 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   80 (96)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHH
Confidence            47899999975 6899999876421         3468999999999999996699999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEE
Q psy12579         99 LKQAQRSVKLVVRY  112 (138)
Q Consensus        99 l~~~~~~v~l~v~r  112 (138)
                      |+++++.+.|+|+|
T Consensus        81 lk~~~~~v~L~V~r   94 (96)
T d2fcfa1          81 IRKAGNPVVFMVQS   94 (96)
T ss_dssp             HHTCCSSEEEEEEC
T ss_pred             HHcCCCeEEEEEEE
Confidence            99999999999986

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.2e-19  Score=109.25  Aligned_cols=89  Identities=29%  Similarity=0.511  Sum_probs=79.9

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      .+.++|+|.|+..+|||+|.++.+.   ..++||..|.++|+|+++|.|++||+|++|||.++.+++|.++..+|++++.
T Consensus         7 g~~~~V~l~k~~~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~   86 (110)
T d1um1a_           7 GYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGK   86 (110)
T ss_dssp             CCEEEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCS
T ss_pred             CCEEEEEEEECCCCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4578999999999999999987543   3469999999999999996799999999999999999999999999999999


Q ss_pred             eEEEEEEECCch
Q psy12579        105 SVKLVVRYTPKV  116 (138)
Q Consensus       105 ~v~l~v~r~~~~  116 (138)
                      .+.|++.|.+..
T Consensus        87 ~v~l~v~r~~~~   98 (110)
T d1um1a_          87 KMRFLVAKSDVE   98 (110)
T ss_dssp             EEEEEEECCCHH
T ss_pred             eEEEEEEeCCCC
Confidence            999999887643

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=8.1e-19  Score=107.96  Aligned_cols=87  Identities=44%  Similarity=0.720  Sum_probs=77.5

Q ss_pred             CCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         26 GHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        26 ~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ....+++|+|.+.. .+|||+|.++.+...++||..|.++++|+++ +|++||+|++|||.++.+++|+++..+|+.+. 
T Consensus        12 ~~~~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~-GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-   89 (104)
T d1wi2a_          12 TQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRA-GLQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-   89 (104)
T ss_dssp             CSSCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHH-TCCTTCEEEEETTEECSSCCHHHHHHHHHHSS-
T ss_pred             ccCcCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhc-ccccCCEEEEECCEECCCCCHHHHHHHHhcCC-
Confidence            34578999999975 6899999998877778999999999999999 79999999999999999999999999999875 


Q ss_pred             eEEEEEEECC
Q psy12579        105 SVKLVVRYTP  114 (138)
Q Consensus       105 ~v~l~v~r~~  114 (138)
                      .+.|+|++..
T Consensus        90 ~v~l~V~~~~   99 (104)
T d1wi2a_          90 EISMRVRFFS   99 (104)
T ss_dssp             SEEEEEECCC
T ss_pred             eEEEEEEECC
Confidence            6888887653

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.9e-19  Score=102.90  Aligned_cols=76  Identities=25%  Similarity=0.472  Sum_probs=70.7

Q ss_pred             EEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEE
Q psy12579         33 VELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRY  112 (138)
Q Consensus        33 v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r  112 (138)
                      |++.++..+|||++.+    +.+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..+++.++..+.|++.|
T Consensus         1 v~l~r~~~g~Gf~l~~----~~~~~V~~V~~gspA~~a-GL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R   75 (77)
T d2f5ya1           1 ITIPRGKDGFGFTICC----DSPVRVQAVDSGGPAERA-GLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR   75 (77)
T ss_dssp             EEEECBTTBTSEEEEC----SSSCEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEE
T ss_pred             CEEecCCCcccEEEEC----CCCEEEEEECCCCHHHHc-CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEE
Confidence            5788889999999997    456999999999999999 79999999999999999999999999999999999999987


Q ss_pred             C
Q psy12579        113 T  113 (138)
Q Consensus       113 ~  113 (138)
                      .
T Consensus        76 ~   76 (77)
T d2f5ya1          76 M   76 (77)
T ss_dssp             C
T ss_pred             E
Confidence            4

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.3e-19  Score=106.08  Aligned_cols=84  Identities=39%  Similarity=0.739  Sum_probs=75.0

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ++.++|+|.|++.+|||+|.++.+.   ..++||..+.++|+|++++.|++||+|++|||.++.+++|.++..+|+++++
T Consensus         1 P~~~~V~l~K~~~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~   80 (88)
T d2fnea1           1 PQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG   80 (88)
T ss_dssp             CEEEEEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             CeEEEEEEEeCCCccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            3578899999888999999876433   3468999999999999997799999999999999999999999999999999


Q ss_pred             eEEEEEE
Q psy12579        105 SVKLVVR  111 (138)
Q Consensus       105 ~v~l~v~  111 (138)
                      .+.|+|.
T Consensus        81 ~v~L~Vl   87 (88)
T d2fnea1          81 TVTLMVL   87 (88)
T ss_dssp             SEEEEEE
T ss_pred             cEEEEEE
Confidence            9999875

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.3e-20  Score=112.77  Aligned_cols=91  Identities=32%  Similarity=0.585  Sum_probs=83.0

Q ss_pred             cCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         24 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      .....+..+|.|.++..+|||+|.++.+...+++|..|.++++|++++.|++||+|++||+..+.++++.++.++|+.++
T Consensus         6 s~~~~e~~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~   85 (103)
T d1wfva_           6 SGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG   85 (103)
T ss_dssp             SCCCSCCEECCEECCTTSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHC
T ss_pred             CCCCceEEEEEEEeCCCccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCC
Confidence            34457888899999889999999998877778999999999999999679999999999999999999999999999999


Q ss_pred             CeEEEEEEECC
Q psy12579        104 RSVKLVVRYTP  114 (138)
Q Consensus       104 ~~v~l~v~r~~  114 (138)
                      ..+.|+|+|..
T Consensus        86 ~~v~l~v~R~~   96 (103)
T d1wfva_          86 RRVRLLLKRGT   96 (103)
T ss_dssp             SEECEEEECTT
T ss_pred             CEEEEEEEECC
Confidence            99999999875

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3e-19  Score=109.73  Aligned_cols=88  Identities=36%  Similarity=0.649  Sum_probs=77.7

Q ss_pred             CCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--C
Q psy12579         27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--R  104 (138)
Q Consensus        27 ~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~--~  104 (138)
                      ..+..+|.|.+...+|||+|.++.+...++||..|.++++|+++|.|++||+|++|||.++.+++|.++.++|+.++  .
T Consensus         7 ~~~~~~V~l~k~~~glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~   86 (103)
T d1uepa_           7 GYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNG   86 (103)
T ss_dssp             SEEEECCEEESSSSSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEEEeCCceEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            34556788899888999999998777778999999999999999779999999999999999999999999999863  5


Q ss_pred             eEEEEEEECC
Q psy12579        105 SVKLVVRYTP  114 (138)
Q Consensus       105 ~v~l~v~r~~  114 (138)
                      .+.|+++|..
T Consensus        87 ~v~l~v~r~~   96 (103)
T d1uepa_          87 QVNLTVRRKV   96 (103)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEeCC
Confidence            7889888753

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.7e-19  Score=111.20  Aligned_cols=87  Identities=31%  Similarity=0.619  Sum_probs=79.7

Q ss_pred             CCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         27 HAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        27 ~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      ..+++.|+|.+...+|||+|.++.  +.++||..|.++|+|+++ +|++||+|++||+.++.++++.++..+|+.++..+
T Consensus        17 ~~~~r~v~l~k~~~glG~~i~gg~--~~gi~V~~V~~gs~A~~~-gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v   93 (117)
T d1uita_          17 VEEPRHVKVQKGSEPLGISIVSGE--KGGIYVSKVTVGSIAHQA-GLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTI   93 (117)
T ss_dssp             SCCCEEEEEECSSCCCCEEEEECT--TSCEEEEEECTTSHHHHH-TCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEE
T ss_pred             CCCCEEEEEEeCCCccCEEEEccC--CCCEEEEEEecCChHHhC-CCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeE
Confidence            357899999998899999999875  468999999999999998 89999999999999999999999999999999999


Q ss_pred             EEEEEECCch
Q psy12579        107 KLVVRYTPKV  116 (138)
Q Consensus       107 ~l~v~r~~~~  116 (138)
                      .|++.+.|..
T Consensus        94 ~l~v~~~p~~  103 (117)
T d1uita_          94 TILAQYNPHV  103 (117)
T ss_dssp             EEEECCCSCC
T ss_pred             EEEEEECCcc
Confidence            9999888754

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.2e-19  Score=106.98  Aligned_cols=85  Identities=28%  Similarity=0.537  Sum_probs=75.1

Q ss_pred             cEEEEEecCCCCcCeEEeccCC------CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         30 PRVVELPKTDEGLGFNVMGGKE------QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        30 ~~~v~l~~~~~~~G~~l~~~~~------~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      ..+|+|.|++.+|||++.++..      ...++||..|.++|+|+++|.|++||+|++|||.++.++++.++..+|++++
T Consensus         3 ~~~V~L~k~~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~   82 (94)
T d1wf8a1           3 LFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK   82 (94)
T ss_dssp             EEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC
T ss_pred             EEEEEEEeCCCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4679999988999999986432      1335899999999999999679999999999999999999999999999999


Q ss_pred             CeEEEEEEECC
Q psy12579        104 RSVKLVVRYTP  114 (138)
Q Consensus       104 ~~v~l~v~r~~  114 (138)
                      ..+.|+|.|+.
T Consensus        83 ~~v~L~V~R~k   93 (94)
T d1wf8a1          83 GNVRFVIGREK   93 (94)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CeEEEEEEeCC
Confidence            99999998753

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.4e-18  Score=104.57  Aligned_cols=85  Identities=36%  Similarity=0.626  Sum_probs=76.3

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCC------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ  101 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~  101 (138)
                      .+..++++.++..+|||+|.++...      ..++||..|.++|||+++ ||++||+|++|||..+.++++.++..++++
T Consensus         7 ~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~-GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~   85 (97)
T d1x5qa1           7 EEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRG   85 (97)
T ss_dssp             CEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHS
T ss_pred             CeEEEEEEEeCCCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhh-cccCCCEEEEECCEECCCCCHHHHHHHHhC
Confidence            3557789999889999999876532      346999999999999999 799999999999999999999999999999


Q ss_pred             CCCeEEEEEEEC
Q psy12579        102 AQRSVKLVVRYT  113 (138)
Q Consensus       102 ~~~~v~l~v~r~  113 (138)
                      ++..+.|+|.|+
T Consensus        86 ~~~~v~l~v~R~   97 (97)
T d1x5qa1          86 AGTAVQMRVWRE   97 (97)
T ss_dssp             CCSEEEEEEEEC
T ss_pred             CCCEEEEEEEEC
Confidence            999999999985

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.9e-19  Score=108.07  Aligned_cols=84  Identities=24%  Similarity=0.478  Sum_probs=75.0

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      ...+|.+. ++.+|||+|.++.+...+++|..|.+++||+++ +|++||+|++||+.++.+++|.++..+|++++..+.|
T Consensus         6 ~~~tv~~~-g~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~-gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L   83 (94)
T d1vb7a_           6 SGLTVDVA-GPAPWGFRISGGRDFHTPIIVTKVTERGKAEAA-DLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRL   83 (94)
T ss_dssp             CCEEEEEC-SSSCCSBCCEEETTTTEEEECCCBCTTSSHHHH-TCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEE
T ss_pred             ceEEEEEE-CCCcCCEEEEeeccCCCCEEEEeccCCChhhhC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            44556653 457899999998877778999999999999987 8999999999999999999999999999999999999


Q ss_pred             EEEECC
Q psy12579        109 VVRYTP  114 (138)
Q Consensus       109 ~v~r~~  114 (138)
                      +|.|..
T Consensus        84 ~V~R~~   89 (94)
T d1vb7a_          84 QLDRSS   89 (94)
T ss_dssp             EEECCC
T ss_pred             EEEECC
Confidence            999864

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.2e-18  Score=103.73  Aligned_cols=85  Identities=35%  Similarity=0.552  Sum_probs=73.3

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      +..+|++.+. .+|||++.++.+.   ..++||..|.++|+|+++|.|++||+|++|||.++.+++|.++..+|++++..
T Consensus         4 ei~~v~l~~~-~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~   82 (92)
T d1t2ma1           4 EIITVTLKKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSV   82 (92)
T ss_dssp             EEEEEEEECS-SSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSE
T ss_pred             eEEEEEEeCC-CccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCe
Confidence            4455666654 5799999876543   34689999999999999966999999999999999999999999999999999


Q ss_pred             EEEEEEECC
Q psy12579        106 VKLVVRYTP  114 (138)
Q Consensus       106 v~l~v~r~~  114 (138)
                      +.|+|.|..
T Consensus        83 v~L~v~R~g   91 (92)
T d1t2ma1          83 VTLEVAKQG   91 (92)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEeCC
Confidence            999999864

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=2.6e-18  Score=103.85  Aligned_cols=83  Identities=30%  Similarity=0.530  Sum_probs=73.6

Q ss_pred             cEEEEEecCC-CCcCeEEeccCCC------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         30 PRVVELPKTD-EGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        30 ~~~v~l~~~~-~~~G~~l~~~~~~------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      .++|+|.+.+ .+|||++.++.+.      ..++||..|.++|||+++|.|++||+|++|||.++.++++.++..+|+++
T Consensus         4 i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~   83 (94)
T d1ihja_           4 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA   83 (94)
T ss_dssp             EEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4678998865 6899999876532      23589999999999999967999999999999999999999999999999


Q ss_pred             CCeEEEEEEE
Q psy12579        103 QRSVKLVVRY  112 (138)
Q Consensus       103 ~~~v~l~v~r  112 (138)
                      +..+.|+|+|
T Consensus        84 ~~~v~L~V~R   93 (94)
T d1ihja_          84 DFKIELEIQT   93 (94)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            9999999987

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.5e-19  Score=111.73  Aligned_cols=87  Identities=30%  Similarity=0.550  Sum_probs=76.7

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC-
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ-  103 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~-  103 (138)
                      .+.++|+|.+.+.+|||+|.++.+.   ..++||..|.+||+|+++|.|+.||+|++|||..+.+++|.++.++|+..+ 
T Consensus        28 ~~~~~V~l~k~~~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~  107 (130)
T d1i16a_          28 ATVCTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPD  107 (130)
T ss_dssp             EEEEEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCS
T ss_pred             CeEEEEEEEeCCCccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCC
Confidence            3567788999888999999987642   457999999999999999779999999999999999999999999999975 


Q ss_pred             CeEEEEEEECC
Q psy12579        104 RSVKLVVRYTP  114 (138)
Q Consensus       104 ~~v~l~v~r~~  114 (138)
                      ..+.|+|+|.+
T Consensus       108 ~~v~l~v~r~~  118 (130)
T d1i16a_         108 GPVTIVIRRKS  118 (130)
T ss_dssp             SEEEEEEEEES
T ss_pred             CeEEEEEEcCC
Confidence            47899998875

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5e-18  Score=100.00  Aligned_cols=78  Identities=23%  Similarity=0.413  Sum_probs=71.2

Q ss_pred             CCCcEEEEEecCCC-CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         27 HAHPRVVELPKTDE-GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        27 ~~~~~~v~l~~~~~-~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      +.+||+|+|+++.. +|||++.++       +|..|.++|||+++ ||++||+|++|||.++.+++|+++..++++++..
T Consensus         2 ~~~pr~V~l~k~~~g~~Gf~i~~g-------~V~~v~~g~~A~~~-Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~   73 (82)
T d1r6ja_           2 AMDPRTITMHKDSTGHVGFIFKNG-------KITSIVKDSSAARN-GLLTEHNICEINGQNVIGLKDSQIADILSTSGTV   73 (82)
T ss_dssp             TTCCEEEEEECCTTSCCCEEEETT-------EEEEECTTSHHHHH-TCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSE
T ss_pred             CCCCEEEEEEeCCCCCcCEEEEEE-------EEEEECCCChHHhc-CcCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCE
Confidence            45789999999875 599999863       79999999999999 7999999999999999999999999999999999


Q ss_pred             EEEEEEE
Q psy12579        106 VKLVVRY  112 (138)
Q Consensus       106 v~l~v~r  112 (138)
                      +.|+|..
T Consensus        74 v~l~v~p   80 (82)
T d1r6ja_          74 VTITIMP   80 (82)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEc
Confidence            9998863

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.2e-17  Score=105.51  Aligned_cols=86  Identities=30%  Similarity=0.553  Sum_probs=78.4

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCe
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~  105 (138)
                      .+..++.|.+...+|||++.++.+...++||..|.++++|++++.|++||+|++||+..+.+++|.++..+|+.+  +..
T Consensus        18 ~~~~~v~l~k~~~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~   97 (123)
T d1ueqa_          18 GTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQS   97 (123)
T ss_dssp             SEEEEEEEECCTTSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCE
T ss_pred             CeEEEEEEEECCCeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence            566778888888999999999887777899999999999999977999999999999999999999999999987  577


Q ss_pred             EEEEEEEC
Q psy12579        106 VKLVVRYT  113 (138)
Q Consensus       106 v~l~v~r~  113 (138)
                      +.|+|.|.
T Consensus        98 v~L~v~R~  105 (123)
T d1ueqa_          98 VNLVLCRG  105 (123)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEcC
Confidence            99999885

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.6e-18  Score=102.62  Aligned_cols=82  Identities=24%  Similarity=0.477  Sum_probs=73.5

Q ss_pred             CcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEE
Q psy12579         29 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVK  107 (138)
Q Consensus        29 ~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~  107 (138)
                      ++|.|++.|.. .+|||++..+.  ..+++|..|.+||+|+++|.|++||+|++|||.++.+++++++.+++++++..+.
T Consensus         1 r~R~V~l~k~~~~~lG~~l~~~~--~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~   78 (88)
T d1kwaa_           1 RSRLVQFQKNTDEPMGITLKMNE--LNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSIT   78 (88)
T ss_dssp             CCEEEEEEECSSSCCCEEEECSC--GGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEE
T ss_pred             CcEEEEEEeCCCCCccEEEEEcC--CCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEE
Confidence            46889999866 68999998754  3579999999999999996699999999999999999999999999999988999


Q ss_pred             EEEEE
Q psy12579        108 LVVRY  112 (138)
Q Consensus       108 l~v~r  112 (138)
                      |++..
T Consensus        79 L~i~p   83 (88)
T d1kwaa_          79 FKIVP   83 (88)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            98874

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=9e-18  Score=106.75  Aligned_cols=88  Identities=38%  Similarity=0.507  Sum_probs=77.7

Q ss_pred             CCCCCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         25 EGHAHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      ......+.|+|.++. .+|||+|.++.+...++||..|.++++|+++ +|++||+|++|||..+.+++|.++.++|+..+
T Consensus        16 ~~~~~~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~-gL~~GD~Il~INg~~v~~~s~~evv~~lr~~~   94 (128)
T d1uf1a_          16 LQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGS-GLKVGDQILEVNGRSFLNILHDEAVRLLKSSR   94 (128)
T ss_dssp             CCCSSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHH-TCCTTCEEEEETTEECSSCCHHHHHHHHTTCS
T ss_pred             cCCCCeEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCCChHHhc-CCCCCCEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            334567889998876 6899999998887788999999999999999 79999999999999999999999999998764


Q ss_pred             CeEEEEEEECC
Q psy12579        104 RSVKLVVRYTP  114 (138)
Q Consensus       104 ~~v~l~v~r~~  114 (138)
                       .+.|+|++..
T Consensus        95 -~v~l~v~~~~  104 (128)
T d1uf1a_          95 -HLILTVKDVG  104 (128)
T ss_dssp             -EEEEEEECCS
T ss_pred             -cEEEEEEECC
Confidence             7888887664

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=9.7e-18  Score=103.06  Aligned_cols=85  Identities=35%  Similarity=0.546  Sum_probs=74.5

Q ss_pred             CcEEEEEecCC-CCcCeEEeccCCC------------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579         29 HPRVVELPKTD-EGLGFNVMGGKEQ------------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA   95 (138)
Q Consensus        29 ~~~~v~l~~~~-~~~G~~l~~~~~~------------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~   95 (138)
                      +.++|.+.+.+ .+|||.+.++...            ..+++|..|.++|||+++ ||++||+|++|||.++.+++|.++
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~a-GL~~GD~Il~INg~~v~~~~h~ev   83 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRA-GLRMGDFLIEVNGQNVVKVGHRQV   83 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHH
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHc-CCCCCCEEEEEcCeEcCCCCHHHH
Confidence            56789998855 6899999876432            235899999999999999 899999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEECC
Q psy12579         96 VELLKQAQRSVKLVVRYTP  114 (138)
Q Consensus        96 ~~~l~~~~~~v~l~v~r~~  114 (138)
                      ..++++++..+.|+|.+.+
T Consensus        84 v~~ik~~~~~v~L~V~~~~  102 (104)
T d1q3oa_          84 VNMIRQGGNTLMVKVVMVT  102 (104)
T ss_dssp             HHHHHHTTTEEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEecC
Confidence            9999999999999998754

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.6e-19  Score=108.83  Aligned_cols=89  Identities=34%  Similarity=0.511  Sum_probs=77.7

Q ss_pred             CCCCcEEEEEecCC-CCcCeEEeccCCC---------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHH
Q psy12579         26 GHAHPRVVELPKTD-EGLGFNVMGGKEQ---------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKA   95 (138)
Q Consensus        26 ~~~~~~~v~l~~~~-~~~G~~l~~~~~~---------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~   95 (138)
                      ..+..++|+|.|.. .+|||+|.++.+.         ..++||..|.++|+|+++|.|++||+|++|||.++.+++|.++
T Consensus         6 sg~~~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea   85 (111)
T d1ujua_           6 SGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEA   85 (111)
T ss_dssp             CSCSSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHH
T ss_pred             CCCCeEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHH
Confidence            34556789999876 6899999976532         4579999999999999996699999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEEECC
Q psy12579         96 VELLKQAQRSVKLVVRYTP  114 (138)
Q Consensus        96 ~~~l~~~~~~v~l~v~r~~  114 (138)
                      ..+|+.++..+.|+|.|..
T Consensus        86 ~~~lk~~~~~v~L~V~r~~  104 (111)
T d1ujua_          86 VQLLRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HHHHSSCSSEEEECCCCCC
T ss_pred             HHHHHcCCCeEEEEEEECC
Confidence            9999999999999998764

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-17  Score=98.28  Aligned_cols=82  Identities=30%  Similarity=0.471  Sum_probs=72.6

Q ss_pred             CcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-CCeE
Q psy12579         29 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-QRSV  106 (138)
Q Consensus        29 ~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~~~v  106 (138)
                      .||.|.+.++. .+|||++...   ..+++|..|.++|||+++ ||+.||+|++|||.++.++++.++..+++.+ +..+
T Consensus         2 ~pr~v~l~k~~~~~lG~~l~~~---~~g~~V~~v~~gspA~~a-GL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v   77 (85)
T d1w9ea1           2 DPREVILCKDQDGKIGLRLKSI---DNGIFVQLVQANSPASLV-GLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKI   77 (85)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEE---TTEEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEE
T ss_pred             CCEEEEEEeCCCCCEeEEEEeC---CCCEEEEEECCCCHHHHc-CCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEE
Confidence            57899999976 5699999875   357999999999999999 8999999999999999999999999999886 5678


Q ss_pred             EEEEEECC
Q psy12579        107 KLVVRYTP  114 (138)
Q Consensus       107 ~l~v~r~~  114 (138)
                      .|++++.|
T Consensus        78 ~l~v~~rP   85 (85)
T d1w9ea1          78 TMTIRDRP   85 (85)
T ss_dssp             EEEEECCT
T ss_pred             EEEEeCCC
Confidence            88887654

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=3.2e-19  Score=110.96  Aligned_cols=85  Identities=27%  Similarity=0.419  Sum_probs=75.0

Q ss_pred             cCCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         24 SEGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        24 ~~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      ...+..+++|+|.++..+|||+|.+    +.+++|..|.+++||+++ ||++||+|++|||.++.+++|.++.++|+.++
T Consensus        10 ~~~~~~pr~v~l~k~~~g~Gf~i~g----~~~v~V~~V~~~spA~~~-GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~   84 (111)
T d1vaea_          10 SKRWSPPRGIHFTVEEGDLGFTLRG----NTPVQVHFLDPHCSASLA-GAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFG   84 (111)
T ss_dssp             CCEECCCCCCCEECCSSCCSCCEES----SSSCEECCCCTTSSHHHH-HCCTTCEEEEETTEECSSCCHHHHHHHHHHTT
T ss_pred             ccCCCCCEEEEEEECCCccCEEEEC----CccEEEEEEcCCChHHhc-ccCcccEEEEECCEEcCCCCHHHHHHHHHcCC
Confidence            3455678899999998999999987    356999999999999999 69999999999999999999999999999874


Q ss_pred             -CeEEEEEEEC
Q psy12579        104 -RSVKLVVRYT  113 (138)
Q Consensus       104 -~~v~l~v~r~  113 (138)
                       ..+.|+|.+.
T Consensus        85 ~~~v~l~v~~~   95 (111)
T d1vaea_          85 GEEVEMKVVSL   95 (111)
T ss_dssp             TSEECEEEECE
T ss_pred             CCeEEEEEECC
Confidence             6788887654

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.6e-17  Score=101.27  Aligned_cols=87  Identities=32%  Similarity=0.505  Sum_probs=76.5

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~--~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      .....|++.+.. .+|||++.++.+  ...++||..|.++|+|+++|.|++||+|++|||..+.++++.++..+|+++++
T Consensus         9 ~~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~   88 (99)
T d1p1da2           9 SGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCED   88 (99)
T ss_dssp             SSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTT
T ss_pred             CCcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCC
Confidence            356778998754 689999987643  24579999999999999996799999999999999999999999999999999


Q ss_pred             eEEEEEEECC
Q psy12579        105 SVKLVVRYTP  114 (138)
Q Consensus       105 ~v~l~v~r~~  114 (138)
                      .+.|+|+|+.
T Consensus        89 ~v~L~V~r~~   98 (99)
T d1p1da2          89 LVKLKIRKDE   98 (99)
T ss_dssp             CEEEEEECCC
T ss_pred             eEEEEEEeCC
Confidence            9999999864

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-17  Score=103.25  Aligned_cols=90  Identities=36%  Similarity=0.523  Sum_probs=78.2

Q ss_pred             CCCCCcEEEEEecCC-CCcCeEEeccCCC-------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHH
Q psy12579         25 EGHAHPRVVELPKTD-EGLGFNVMGGKEQ-------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAV   96 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~-~~~G~~l~~~~~~-------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~   96 (138)
                      +...+...|.|.|.+ .+|||+|.++.+.       ..++||..|.++++|++++.|++||+|++|||.++.++++.++.
T Consensus         6 sg~~~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~   85 (114)
T d1uewa_           6 SGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIV   85 (114)
T ss_dssp             SCCCCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHH
T ss_pred             CCCceeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHH
Confidence            444577889998865 6899999976532       34689999999999999977999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEECC
Q psy12579         97 ELLKQAQRSVKLVVRYTP  114 (138)
Q Consensus        97 ~~l~~~~~~v~l~v~r~~  114 (138)
                      .+|++++..+.|+|.|..
T Consensus        86 ~ll~~~~~~v~l~V~r~~  103 (114)
T d1uewa_          86 KLIKDAGLSVTLRIIPQE  103 (114)
T ss_dssp             HHHHHTTTEEEEEECCCS
T ss_pred             HHHHcCCCeEEEEEEeCC
Confidence            999999999999998764

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=1.1e-17  Score=101.74  Aligned_cols=83  Identities=30%  Similarity=0.568  Sum_probs=72.1

Q ss_pred             cEEEEEecCC--CCcCeEEeccCCC---------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHH
Q psy12579         30 PRVVELPKTD--EGLGFNVMGGKEQ---------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVEL   98 (138)
Q Consensus        30 ~~~v~l~~~~--~~~G~~l~~~~~~---------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~   98 (138)
                      .|.|+|.+.+  .+|||++.++.+.         ..++||..|.++|+|+++|.|++||+|++|||.++.++++.++..+
T Consensus         3 ~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~   82 (98)
T d1rzxa_           3 HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDM   82 (98)
T ss_dssp             CEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHH
Confidence            4678888754  5899999876521         3368999999999999996699999999999999999999999999


Q ss_pred             HHhCCCeEEEEEEE
Q psy12579         99 LKQAQRSVKLVVRY  112 (138)
Q Consensus        99 l~~~~~~v~l~v~r  112 (138)
                      |+.++..+.|+|+.
T Consensus        83 l~~~~~~v~l~v~p   96 (98)
T d1rzxa_          83 MVANSSNLIITVKP   96 (98)
T ss_dssp             HHHTCTEEEEEEEC
T ss_pred             HHcCCCeEEEEEEe
Confidence            99999999998874

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-17  Score=102.73  Aligned_cols=86  Identities=34%  Similarity=0.631  Sum_probs=73.1

Q ss_pred             CCCcEEEEEecCC-CCcCeEEeccCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCC
Q psy12579         27 HAHPRVVELPKTD-EGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQR  104 (138)
Q Consensus        27 ~~~~~~v~l~~~~-~~~G~~l~~~~~~-~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~  104 (138)
                      ....+.+.+.+.. .+|||+|.++.+. ..++||..|.+||+|+++|.|++||+|++|||..+.+++++++..+|+.++.
T Consensus         6 ~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~   85 (107)
T d1x6da1           6 LDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQARE   85 (107)
T ss_dssp             CTTEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTS
T ss_pred             cCCcEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCC
Confidence            3466778888765 6899999987654 4679999999999999997799999999999999999999999999999876


Q ss_pred             eEEEEEEE
Q psy12579        105 SVKLVVRY  112 (138)
Q Consensus       105 ~v~l~v~r  112 (138)
                      .+.+++.+
T Consensus        86 ~~~l~v~~   93 (107)
T d1x6da1          86 PRQAVIVT   93 (107)
T ss_dssp             SSEEEEEE
T ss_pred             CEEEEEEE
Confidence            65555543

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.73  E-value=1.8e-17  Score=99.66  Aligned_cols=83  Identities=29%  Similarity=0.490  Sum_probs=72.1

Q ss_pred             EEEEEecCC-CCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC---CC
Q psy12579         31 RVVELPKTD-EGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA---QR  104 (138)
Q Consensus        31 ~~v~l~~~~-~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~---~~  104 (138)
                      .+|+|.++. .+|||++.++.+.  +.++||..|.++|+|+++|.|++||+|++|||.++.+++|.++.++|+.+   ..
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~   82 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPG   82 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSS
T ss_pred             EEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCC
Confidence            578888864 7899999987643  35899999999999999977999999999999999999999999999874   45


Q ss_pred             eEEEEEEEC
Q psy12579        105 SVKLVVRYT  113 (138)
Q Consensus       105 ~v~l~v~r~  113 (138)
                      .+.|+|.|.
T Consensus        83 ~v~L~V~R~   91 (92)
T d2f0aa1          83 PIVLTVAKL   91 (92)
T ss_dssp             CEEEEEECC
T ss_pred             cEEEEEEeC
Confidence            788998874

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=8.2e-18  Score=102.82  Aligned_cols=87  Identities=38%  Similarity=0.633  Sum_probs=75.3

Q ss_pred             CCCCcEEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC
Q psy12579         26 GHAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ  103 (138)
Q Consensus        26 ~~~~~~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~  103 (138)
                      ...+.+.|+|.+..  .+|||+|.++.+...++||..|.++++|+++ +|++||+|++|||.++.++++.++.++|+..+
T Consensus         5 s~~~~~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~-gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~~   83 (101)
T d1ueza_           5 SSGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLARVTHAEAVKALKGSK   83 (101)
T ss_dssp             CSCCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHH-TCCSSCCEEEETTEECSSCCHHHHHHHSSSSS
T ss_pred             CCCCEEEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCCChHHhc-CCCCCcEEEEECCEECCCCCHHHHHHHHhcCC
Confidence            34577889998754  5799999998877778999999999999999 79999999999999999999999999999876


Q ss_pred             CeEEEEEEECC
Q psy12579        104 RSVKLVVRYTP  114 (138)
Q Consensus       104 ~~v~l~v~r~~  114 (138)
                       .+.++|.+.+
T Consensus        84 -~~~l~V~~~~   93 (101)
T d1ueza_          84 -KLVLSVYSAG   93 (101)
T ss_dssp             -SCCEEECCCC
T ss_pred             -CEEEEEEECC
Confidence             4667776654

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.4e-17  Score=99.97  Aligned_cols=85  Identities=31%  Similarity=0.531  Sum_probs=73.6

Q ss_pred             CCCcEEEEEec-CCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         27 HAHPRVVELPK-TDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        27 ~~~~~~v~l~~-~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      ..+.+.|.+.+ ++.+|||+|.++.+...++||..|.++|||+++ +|+.||+|++|||.++.++++.++.++|+.++. 
T Consensus         6 ~~~~~~v~i~~~~~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~-gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~~-   83 (101)
T d1x5na1           6 ENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEV-GLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-   83 (101)
T ss_dssp             CCSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTT-TCCTTCEEEEETTEETTSCCTTHHHHHHHHCSS-
T ss_pred             CCccEEEEEEeeCCCcccEEEeccCCCCCCEEEEEECCCChHHhC-CCCcccEEEEECCEECCCCCHHHHHHHHhCCCC-
Confidence            35668888866 457899999998877778999999999999998 899999999999999999999999999999864 


Q ss_pred             EEEEEEEC
Q psy12579        106 VKLVVRYT  113 (138)
Q Consensus       106 v~l~v~r~  113 (138)
                      +.+++.+.
T Consensus        84 ~~l~v~~~   91 (101)
T d1x5na1          84 LTISIVAA   91 (101)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEEEC
Confidence            66666544

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.9e-17  Score=102.06  Aligned_cols=86  Identities=30%  Similarity=0.533  Sum_probs=74.0

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhc-CCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRH-GGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--  103 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~-~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~--  103 (138)
                      ...++|++.++. .+|||++.++.+...++||..|.++|+|+++ ++|++||+|++|||.++.+++|.++..+|+.++  
T Consensus         7 ~~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~   86 (106)
T d2cs5a1           7 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCER   86 (106)
T ss_dssp             SCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHC
T ss_pred             CcEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            456788998876 5699999988776778999999999999984 789999999999999999999999999998753  


Q ss_pred             --CeEEEEEEEC
Q psy12579        104 --RSVKLVVRYT  113 (138)
Q Consensus       104 --~~v~l~v~r~  113 (138)
                        ..+.|+++++
T Consensus        87 ~~~~v~L~vrp~   98 (106)
T d2cs5a1          87 HSGELMLLVRPN   98 (106)
T ss_dssp             CSSCEEEEEECC
T ss_pred             CCcEEEEEECCC
Confidence              3577777765

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=8e-18  Score=103.22  Aligned_cols=82  Identities=30%  Similarity=0.503  Sum_probs=73.5

Q ss_pred             EEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEE
Q psy12579         32 VVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVR  111 (138)
Q Consensus        32 ~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~  111 (138)
                      .|++ .++.+|||+|.++.+...++||..+.++++|++. +|++||+|++|||.++.+++|.++.++|+.++..+.|+|.
T Consensus         8 ~v~~-~g~~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~-~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~   85 (103)
T d1wf7a_           8 SVSL-VGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQA-HVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQ   85 (103)
T ss_dssp             EEEE-ESSSCCSCCEEEETTTTEEEEECCCCTTCHHHHT-TCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEEC
T ss_pred             EEEE-ECCCCccEEEEcccCCCCCEEEEecCCCChHHHC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            3554 4567899999999887778999999999999976 9999999999999999999999999999999999999999


Q ss_pred             ECCc
Q psy12579        112 YTPK  115 (138)
Q Consensus       112 r~~~  115 (138)
                      |...
T Consensus        86 R~~~   89 (103)
T d1wf7a_          86 RASA   89 (103)
T ss_dssp             CCSC
T ss_pred             ECCC
Confidence            8753

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=6.4e-17  Score=100.56  Aligned_cols=84  Identities=31%  Similarity=0.450  Sum_probs=70.2

Q ss_pred             cEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         30 PRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        30 ~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      .++|+|.+.. .+|||++.++.+ ..++||..|.++|||+++|.|++||+|++|||..+.++++.++..+|+.+.....+
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~-~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~   80 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV   80 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSS-SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEE
T ss_pred             eEEEEEEECCCCcEeEEEEeecC-CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEE
Confidence            3678898755 789999998755 56799999999999999955999999999999999999999999999998655444


Q ss_pred             EE-EECC
Q psy12579        109 VV-RYTP  114 (138)
Q Consensus       109 ~v-~r~~  114 (138)
                      .+ .+.+
T Consensus        81 ~l~~~~~   87 (112)
T d1qaua_          81 VLILRGP   87 (112)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            43 3433

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.6e-17  Score=101.97  Aligned_cols=88  Identities=35%  Similarity=0.513  Sum_probs=78.0

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCC-CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQ-NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS  105 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~-~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~  105 (138)
                      ..++.|++.|.. .+|||+|.++.+. ..++||..|.++++|++++.|++||+|++||+.++.++++.++..+|++++..
T Consensus        14 ~~p~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~   93 (117)
T d1v62a_          14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEK   93 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSE
T ss_pred             CCCEEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCc
Confidence            467889998865 5899999986543 45699999999999999977999999999999999999999999999999999


Q ss_pred             EEEEEEECCc
Q psy12579        106 VKLVVRYTPK  115 (138)
Q Consensus       106 v~l~v~r~~~  115 (138)
                      +.|+|.+.+.
T Consensus        94 v~l~v~~~~~  103 (117)
T d1v62a_          94 VRLEILPVPQ  103 (117)
T ss_dssp             EEEEECCBTT
T ss_pred             EEEEEEECCC
Confidence            9999987653

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.4e-16  Score=97.60  Aligned_cols=82  Identities=33%  Similarity=0.592  Sum_probs=69.2

Q ss_pred             cEEEEEec-CCCCcCeEEeccCCC--------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579         30 PRVVELPK-TDEGLGFNVMGGKEQ--------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK  100 (138)
Q Consensus        30 ~~~v~l~~-~~~~~G~~l~~~~~~--------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~  100 (138)
                      .+.+++.. .+.+|||+|.++.+.        +.++||..|.++|||++  .|++||+|++|||.++.+++|.++.++|+
T Consensus        10 ~~~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~--~L~~GD~Il~VNg~~v~~~t~~eav~~l~   87 (103)
T d2h3la1          10 KQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK   87 (103)
T ss_dssp             EEEEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTT--TCCTTCEEEEETTEECSSCCHHHHHHHHH
T ss_pred             cEEEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHh--ccCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            34444433 245799999987542        34799999999999985  59999999999999999999999999999


Q ss_pred             hCCCeEEEEEEEC
Q psy12579        101 QAQRSVKLVVRYT  113 (138)
Q Consensus       101 ~~~~~v~l~v~r~  113 (138)
                      .+++.+.|.|.|.
T Consensus        88 ~~~~~v~L~V~R~  100 (103)
T d2h3la1          88 TFQNTVELIIVRE  100 (103)
T ss_dssp             HCCSEEEEEEEEE
T ss_pred             hCCCeEEEEEEEE
Confidence            9999999999885

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=1.9e-16  Score=95.85  Aligned_cols=84  Identities=32%  Similarity=0.574  Sum_probs=70.3

Q ss_pred             CCcEEEEEecCCCCcCeEEeccCCC--CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC--
Q psy12579         28 AHPRVVELPKTDEGLGFNVMGGKEQ--NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ--  103 (138)
Q Consensus        28 ~~~~~v~l~~~~~~~G~~l~~~~~~--~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~--  103 (138)
                      ...+++++.+. .+|||+|.++.+.  ..++||..|.++|+|+++|.|++||+|++|||.++.+++++++..+|+++.  
T Consensus         7 ~~~~~v~~~~~-~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   85 (96)
T d1wi4a1           7 PAFRVITVTKE-TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLR   85 (96)
T ss_dssp             TTEEEEEECCS-SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCS
T ss_pred             CcEEEEEecCC-CccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            45566777664 5799999987653  456899999999999999669999999999999999999999999999863  


Q ss_pred             --CeEEEEEEE
Q psy12579        104 --RSVKLVVRY  112 (138)
Q Consensus       104 --~~v~l~v~r  112 (138)
                        ..+.+.+.|
T Consensus        86 ~~~~vel~~~R   96 (96)
T d1wi4a1          86 SESPWEIAFIR   96 (96)
T ss_dssp             SSSCEEEEEEC
T ss_pred             CCCeEEEEEEC
Confidence              557777654

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.4e-17  Score=100.72  Aligned_cols=86  Identities=28%  Similarity=0.555  Sum_probs=73.7

Q ss_pred             CcEEEEEecCC-------CCcCeEEeccCCC-----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHH
Q psy12579         29 HPRVVELPKTD-------EGLGFNVMGGKEQ-----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAV   96 (138)
Q Consensus        29 ~~~~v~l~~~~-------~~~G~~l~~~~~~-----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~   96 (138)
                      ..+.+.+.+..       .+|||+|.++.+.     ..++||..|.++++|+++|.|+.||+|++|||.++.+++|+++.
T Consensus        12 p~~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~   91 (117)
T d1ujda_          12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ   91 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CceeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHH
Confidence            34567776653       4699999887543     23689999999999999966999999999999999999999999


Q ss_pred             HHHHhCCCeEEEEEEECC
Q psy12579         97 ELLKQAQRSVKLVVRYTP  114 (138)
Q Consensus        97 ~~l~~~~~~v~l~v~r~~  114 (138)
                      .+|++++..+.|+|+|..
T Consensus        92 ~~i~~~~~~v~l~v~r~~  109 (117)
T d1ujda_          92 SIISQQSGEAEICVRLDL  109 (117)
T ss_dssp             HHHSCCSSCEEEEEESSC
T ss_pred             HHHHcCCCeEEEEEEECC
Confidence            999999989999998874

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=8e-17  Score=98.89  Aligned_cols=84  Identities=33%  Similarity=0.548  Sum_probs=74.1

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCC------CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHH
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQ------NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLK  100 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~------~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~  100 (138)
                      .++++|.+.|+. .+|||++.++.+.      ..++||..+.+||+|+ . +|+.||+|++|||.++.++++.++..+|+
T Consensus         6 ~e~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~-~L~~GD~Il~INg~~v~~~~~~ev~~ll~   83 (104)
T d2csja1           6 WEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-G-LLQENDRVVMVNGTPMEDVLHSFAVQQLR   83 (104)
T ss_dssp             EEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-H-HBCTTCEEEEESSCBCBTCCHHHHHHHHH
T ss_pred             CccEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-c-CCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            356789999876 6899999887643      3469999999999997 4 89999999999999999999999999999


Q ss_pred             hCCCeEEEEEEEC
Q psy12579        101 QAQRSVKLVVRYT  113 (138)
Q Consensus       101 ~~~~~v~l~v~r~  113 (138)
                      .++..+.|+|.|.
T Consensus        84 ~~~~~v~l~V~R~   96 (104)
T d2csja1          84 KSGKIAAIVVKRP   96 (104)
T ss_dssp             HSCSEEEEEEEEE
T ss_pred             cCCCEEEEEEEeC
Confidence            9999999999886

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=6.7e-18  Score=103.52  Aligned_cols=77  Identities=30%  Similarity=0.484  Sum_probs=71.4

Q ss_pred             cCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECC
Q psy12579         37 KTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTP  114 (138)
Q Consensus        37 ~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~  114 (138)
                      +++.+|||+|.++.+...+++|..|.++++|+.+ +|++||+|++||+..+.+++|.++..+|+.++..+.|+|.|..
T Consensus        12 ~g~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~-~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~   88 (103)
T d1v5la_          12 PGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAA-NLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE   88 (103)
T ss_dssp             ESSSCCSBCCEEETTTTEEEECSCBCTTSTTGGG-TCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCT
T ss_pred             ECCCCCCEEEEeecCCCCCEEEEEccCCChHHhC-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            5678899999998877778999999999999987 9999999999999999999999999999999999999999864

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=7.8e-17  Score=101.53  Aligned_cols=84  Identities=27%  Similarity=0.437  Sum_probs=70.8

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCC----CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQ----NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~----~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      .+.+.|.|.++. .+|||+|.++.+.    ..++||..|.++++|+++|.|++||+|++||+.++.+++++++.++|+++
T Consensus        14 ~~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~   93 (122)
T d1v5qa_          14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             ceeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcC
Confidence            456778888865 6899999987532    45699999999999999977999999999999999999999999999998


Q ss_pred             CCeEEEEEE
Q psy12579        103 QRSVKLVVR  111 (138)
Q Consensus       103 ~~~v~l~v~  111 (138)
                      +..+.|++.
T Consensus        94 ~~~~~l~l~  102 (122)
T d1v5qa_          94 SITSKVTLE  102 (122)
T ss_dssp             TTTTCEEEE
T ss_pred             CCceEEEEE
Confidence            765544444

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=3e-16  Score=95.59  Aligned_cols=81  Identities=30%  Similarity=0.563  Sum_probs=72.5

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeE
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSV  106 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v  106 (138)
                      ...+.|.+.+.. .+|||++.++   ..+++|..|.++|+|+++|.|++||+|++|||.++.+++++++.++|+.+++.+
T Consensus        17 ~~i~~V~l~k~~~~~lG~~v~~~---~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v   93 (100)
T d1va8a1          17 ETVKIVRIEKARDIPLGATVRNE---MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTL   93 (100)
T ss_dssp             EECEEEEEEECTTCCCCEEEEEC---SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEE
T ss_pred             ceEEEEEEEeCCCCCccEEEEec---CCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeE
Confidence            466789998865 6799999875   457999999999999999669999999999999999999999999999998889


Q ss_pred             EEEEE
Q psy12579        107 KLVVR  111 (138)
Q Consensus       107 ~l~v~  111 (138)
                      +|++.
T Consensus        94 ~L~v~   98 (100)
T d1va8a1          94 TFVLI   98 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88875

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2e-16  Score=99.05  Aligned_cols=83  Identities=29%  Similarity=0.506  Sum_probs=71.0

Q ss_pred             EEEecCCCCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC----CCeEE
Q psy12579         33 VELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA----QRSVK  107 (138)
Q Consensus        33 v~l~~~~~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~----~~~v~  107 (138)
                      +...+...+|||.|.++.+.. .++||..|.++|+|+++|.|+.||+|++|||.++.+++|.++..+|+++    +..+.
T Consensus        21 ~~~~~~~~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~  100 (118)
T d1v6ba_          21 LLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWID  100 (118)
T ss_dssp             EEEEESCSCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEE
T ss_pred             EEEecCCCCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEE
Confidence            333445568999999987643 4699999999999999967999999999999999999999999999864    66799


Q ss_pred             EEEEECCc
Q psy12579        108 LVVRYTPK  115 (138)
Q Consensus       108 l~v~r~~~  115 (138)
                      |++.|.++
T Consensus       101 L~v~r~pp  108 (118)
T d1v6ba_         101 LVVAVCPP  108 (118)
T ss_dssp             EEEECCCS
T ss_pred             EEEEeCCC
Confidence            99998763

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.3e-16  Score=91.45  Aligned_cols=74  Identities=31%  Similarity=0.560  Sum_probs=65.6

Q ss_pred             EEEEEecCC--CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEE
Q psy12579         31 RVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKL  108 (138)
Q Consensus        31 ~~v~l~~~~--~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l  108 (138)
                      +++.+.+.+  .+|||++.++       +|..|.+||+|+++ +|+.||+|++|||.++.+++|.++.++++.+++.+.|
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~g-------~V~~V~~gs~A~~~-gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l   73 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERG-GVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHM   73 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEETT-------EEEEECTTSHHHHH-TCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEE
T ss_pred             EEEEEEcCCCCCCcCEEEECC-------EEEEEcCCCHHHHC-CCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEE
Confidence            467777743  6899999863       79999999999997 9999999999999999999999999999999999999


Q ss_pred             EEEE
Q psy12579        109 VVRY  112 (138)
Q Consensus       109 ~v~r  112 (138)
                      ++..
T Consensus        74 ~viP   77 (79)
T d1y7na1          74 KTMP   77 (79)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8853

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.6e-16  Score=97.24  Aligned_cols=85  Identities=28%  Similarity=0.466  Sum_probs=71.8

Q ss_pred             CcEEEEEecCCCCcCeEEeccCCCC-CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCC----
Q psy12579         29 HPRVVELPKTDEGLGFNVMGGKEQN-SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQ----  103 (138)
Q Consensus        29 ~~~~v~l~~~~~~~G~~l~~~~~~~-~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~----  103 (138)
                      ....|++.+...+|||+|.++.+.. .+++|..|.++++|+++|.|++||+|++|||.++.+++|.++..+|++++    
T Consensus         6 ~~~vv~~~k~~~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~   85 (103)
T d1ufxa_           6 SGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKD   85 (103)
T ss_dssp             SSEEEEEECCSSSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSS
T ss_pred             CCEEEEEEeCCCccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCc
Confidence            3466888888899999999886543 35899999999999999779999999999999999999999999999853    


Q ss_pred             -CeEEEEEEEC
Q psy12579        104 -RSVKLVVRYT  113 (138)
Q Consensus       104 -~~v~l~v~r~  113 (138)
                       ..+.+.+.+.
T Consensus        86 ~~~~~l~v~~~   96 (103)
T d1ufxa_          86 RDYIDFLVTEF   96 (103)
T ss_dssp             CSEEEEEECCC
T ss_pred             cceEEEEEeCC
Confidence             4566666543

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2e-16  Score=96.27  Aligned_cols=86  Identities=33%  Similarity=0.480  Sum_probs=72.1

Q ss_pred             CCcEEEEEecCC-CCcCeEEeccCC----CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC
Q psy12579         28 AHPRVVELPKTD-EGLGFNVMGGKE----QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA  102 (138)
Q Consensus        28 ~~~~~v~l~~~~-~~~G~~l~~~~~----~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~  102 (138)
                      .+...|.+.+.+ .+|||+|.++.+    ...+++|..+.++|||+++|.|++||+|++|||.++.+++|+++.++|+++
T Consensus         7 ~e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~   86 (99)
T d1x5ra1           7 TETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDA   86 (99)
T ss_dssp             SEEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHH
T ss_pred             eeeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            466778888866 689999998753    245699999999999999977999999999999999999999999999976


Q ss_pred             C--CeEEEEEEEC
Q psy12579        103 Q--RSVKLVVRYT  113 (138)
Q Consensus       103 ~--~~v~l~v~r~  113 (138)
                      +  ..+.|.+.++
T Consensus        87 ~~~~~l~l~v~~~   99 (99)
T d1x5ra1          87 ALAHKVVLEVEFD   99 (99)
T ss_dssp             HTTTCEEEEEEEC
T ss_pred             CCCCEEEEEEEcC
Confidence            4  4566666553

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.5e-16  Score=91.34  Aligned_cols=78  Identities=29%  Similarity=0.448  Sum_probs=65.0

Q ss_pred             EEEecCC-CCcCeEEeccCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCe--EE
Q psy12579         33 VELPKTD-EGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRS--VK  107 (138)
Q Consensus        33 v~l~~~~-~~~G~~l~~~~~--~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~--v~  107 (138)
                      |.|.+.. .+|||++..+..  ...++||..|.++|+|+++|.|++||+|++|||.++.+++|.++..++++++..  +.
T Consensus         2 V~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~   81 (85)
T d1x45a1           2 VFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVK   81 (85)
T ss_dssp             EEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEE
T ss_pred             eEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEE
Confidence            6777754 689999974322  245799999999999999977999999999999999999999999999998654  44


Q ss_pred             EEE
Q psy12579        108 LVV  110 (138)
Q Consensus       108 l~v  110 (138)
                      |.|
T Consensus        82 L~V   84 (85)
T d1x45a1          82 LNI   84 (85)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.5e-16  Score=97.25  Aligned_cols=75  Identities=27%  Similarity=0.514  Sum_probs=65.7

Q ss_pred             CCCcCeEEeccCCC---CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--CCeEEEEEEEC
Q psy12579         39 DEGLGFNVMGGKEQ---NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--QRSVKLVVRYT  113 (138)
Q Consensus        39 ~~~~G~~l~~~~~~---~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~~~v~l~v~r~  113 (138)
                      +.+|||++.++.+.   ..++||..|.++|+|+++|.|+.||+|++|||.++.+++|+++..+|+.+  +..+.|+|.|+
T Consensus        29 ~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~RP  108 (108)
T d2cssa1          29 GALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRP  108 (108)
T ss_dssp             SSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEEC
T ss_pred             CCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeCc
Confidence            46799999987643   23799999999999999977999999999999999999999999999876  45788888874

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.1e-16  Score=100.02  Aligned_cols=85  Identities=25%  Similarity=0.300  Sum_probs=75.4

Q ss_pred             CCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--C
Q psy12579         26 GHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--Q  103 (138)
Q Consensus        26 ~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--~  103 (138)
                      ...+...+.+.++..+|||++..+   ..+++|..|.++|+|+++|.|+.||+|++|||.++.++++.++.++|+..  +
T Consensus        24 ~~~~~~~v~l~~g~~GlG~~i~~~---~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g  100 (126)
T d1wifa_          24 SLNKVIQTKLTVGNLGLGLVVIQN---GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIG  100 (126)
T ss_dssp             CCCCEEEEEEECCTTCCCCCEEEE---TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSS
T ss_pred             cCCcEEEEEEeeCCCcEEEEEEec---CCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCC
Confidence            345677888999999999999874   34689999999999999966999999999999999999999999999985  5


Q ss_pred             CeEEEEEEEC
Q psy12579        104 RSVKLVVRYT  113 (138)
Q Consensus       104 ~~v~l~v~r~  113 (138)
                      ..+.|+|.|.
T Consensus       101 ~~v~L~v~R~  110 (126)
T d1wifa_         101 TVLQIKAYRG  110 (126)
T ss_dssp             CEEEEEEESS
T ss_pred             CEEEEEEEeC
Confidence            7899999986

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=8.8e-16  Score=97.27  Aligned_cols=82  Identities=33%  Similarity=0.576  Sum_probs=68.9

Q ss_pred             EEEec-CCCCcCeEEeccCCCC----CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-----
Q psy12579         33 VELPK-TDEGLGFNVMGGKEQN----SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-----  102 (138)
Q Consensus        33 v~l~~-~~~~~G~~l~~~~~~~----~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-----  102 (138)
                      |.+.+ +..+|||+|.++.+..    .++||..|.++++|+++|.|+.||+|++|||.++.+++|.++.++|+++     
T Consensus        29 v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~  108 (127)
T d1wg6a_          29 IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEG  108 (127)
T ss_dssp             EECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccC
Confidence            44444 3468999999766432    3689999999999999977999999999999999999999999999875     


Q ss_pred             --CCeEEEEEEECC
Q psy12579        103 --QRSVKLVVRYTP  114 (138)
Q Consensus       103 --~~~v~l~v~r~~  114 (138)
                        ...+.|+|.|..
T Consensus       109 ~~~~~V~L~V~R~~  122 (127)
T d1wg6a_         109 NIRGMIQLVILRRS  122 (127)
T ss_dssp             HHTCEEEEEEEECS
T ss_pred             CCCCEEEEEEeeCC
Confidence              568999998853

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-14  Score=87.27  Aligned_cols=84  Identities=21%  Similarity=0.368  Sum_probs=67.7

Q ss_pred             CCCCCcEEEEEecCCCCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC--
Q psy12579         25 EGHAHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA--  102 (138)
Q Consensus        25 ~~~~~~~~v~l~~~~~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~--  102 (138)
                      +...+.++|+|.|+..+|||+|.++.+   +.++...   .+++..++|++||+|++|||.++.+++|+++.++|+..  
T Consensus         6 ~~~~e~~~v~l~k~~~glGf~i~g~~~---~~~~~~~---~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~   79 (96)
T d1ujva_           6 SGQAELMTLTIVKGAQGFGFTIADSPT---GQRVKQI---LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPI   79 (96)
T ss_dssp             CCCCCCEEEEEECCSSSSSEEEEEETT---EEEEEEE---SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCT
T ss_pred             CCCceEEEEEEEeCCCcccEEEEeeCC---CceEeec---cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            445677899999999999999998642   2333333   33444459999999999999999999999999999985  


Q ss_pred             CCeEEEEEEECC
Q psy12579        103 QRSVKLVVRYTP  114 (138)
Q Consensus       103 ~~~v~l~v~r~~  114 (138)
                      +..+.|+|+|.+
T Consensus        80 g~~v~l~v~R~~   91 (96)
T d1ujva_          80 GSETSLIIHRGS   91 (96)
T ss_dssp             TSEEEEEEECCS
T ss_pred             CCEEEEEEEECC
Confidence            578999998864

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.57  E-value=2.2e-14  Score=85.91  Aligned_cols=75  Identities=24%  Similarity=0.457  Sum_probs=66.0

Q ss_pred             CCcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEEEECCc
Q psy12579         40 EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVVRYTPK  115 (138)
Q Consensus        40 ~~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~~~  115 (138)
                      .++|+++....+...+++|..+.++|||+++ ||++||.|++|||.++.++++.++..+++. .+..+.|++.|++.
T Consensus         5 ~GiGi~i~~~~~~~~~v~V~~v~~gsPA~~A-Gl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~   80 (92)
T d1fc6a3           5 TGVGLEITYDGGSGKDVVVLTPAPGGPAEKA-GARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGA   80 (92)
T ss_dssp             BBCSEEEEECTTCSSCEEEEEECTTSHHHHT-TCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             EEEEEEEEEcCCCCceEEEEEecCCCChhHH-hhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCC
Confidence            5799999765444567999999999999999 899999999999999999999999999984 57789999999754

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-14  Score=91.34  Aligned_cols=85  Identities=27%  Similarity=0.521  Sum_probs=68.4

Q ss_pred             CcEEEEEecC--CCCcCeEEeccCC--CCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhC-C
Q psy12579         29 HPRVVELPKT--DEGLGFNVMGGKE--QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQA-Q  103 (138)
Q Consensus        29 ~~~~v~l~~~--~~~~G~~l~~~~~--~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~-~  103 (138)
                      +.+.|+|.+.  ..+|||+|.++.+  ...++||..|.++|+|++++.|++||+|++|||.++.+  +.++..+++.+ +
T Consensus        19 e~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~~~~   96 (124)
T d1wh1a_          19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEEN   96 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSC
T ss_pred             eeEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhhCCC
Confidence            4556788773  3689999987653  35679999999999999997799999999999999965  66777777764 5


Q ss_pred             CeEEEEEEECCc
Q psy12579        104 RSVKLVVRYTPK  115 (138)
Q Consensus       104 ~~v~l~v~r~~~  115 (138)
                      ..+.|++.|...
T Consensus        97 ~~v~l~v~r~~~  108 (124)
T d1wh1a_          97 KNFSLLIARPEL  108 (124)
T ss_dssp             CSCCEEEEECSS
T ss_pred             CcEEEEEEeCCC
Confidence            678888887643

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=2.1e-11  Score=72.01  Aligned_cols=69  Identities=20%  Similarity=0.350  Sum_probs=56.4

Q ss_pred             CcCeEEeccCCCCCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEEC
Q psy12579         41 GLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYT  113 (138)
Q Consensus        41 ~~G~~l~~~~~~~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~  113 (138)
                      .||+.+....+ ..+++|..|.++|||+++ ||+.||.|++|||.++.+  ..++...+..  .+..+.|++.|.
T Consensus         4 ~LGv~~~~~~~-~~Gv~V~~V~~~spA~~a-Gl~~GD~I~~ing~~i~~--~~~~~~~i~~~~~g~~v~l~v~r~   74 (88)
T d2z9ia1           4 SLGVQVTNDKD-TLGAKIVEVVAGGAAANA-GVPKGVVVTKVDDRPINS--ADALVAAVRSKAPGATVALTFQDP   74 (88)
T ss_dssp             ECCEEEECCC--CCSEEEEEECTTSTTGGG-TCCTTCEEEEETTEECCS--HHHHHHHHHTSCTTCEEEEEEEET
T ss_pred             EEeEEEEecCC-CCcEEEEEECCCCHHHHc-CCCCCCEEEEeCCCcCCc--HHHHHHHHHhCCCCCEEEEEEEEC
Confidence            57888876543 557999999999999999 899999999999999965  4566666544  478999999885

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=3e-11  Score=71.33  Aligned_cols=61  Identities=18%  Similarity=0.337  Sum_probs=54.7

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCch
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPKV  116 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~~  116 (138)
                      ..|++|..|.++|||+++ ||++||.|++||+.++.  +..++..+++..+..+.+++.|+...
T Consensus        24 ~~Gv~V~~V~~~spA~~a-Gl~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~~~~   84 (88)
T d1ky9b2          24 DQGVVVNNVKTGTPAAQI-GLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDST   84 (88)
T ss_dssp             TSCCCBCCCCSSCTTGGG-TCCSSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEEEESSSCE
T ss_pred             CCeEEEEEECCCCHHHHc-CCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEEEEECCEE
Confidence            567999999999999999 99999999999999995  56888888988888999999998754

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6e-10  Score=66.99  Aligned_cols=59  Identities=24%  Similarity=0.428  Sum_probs=52.0

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHhCCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQAQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  115 (138)
                      ..|++|..|.++|||+.+ ||++||.|++|||..+.+  ..++.+.++ .+..+.+++.|++.
T Consensus        30 ~~Gv~V~~V~~~spA~~a-Gl~~GDiI~~ing~~V~s--~~dl~~~l~-~g~~v~l~v~R~g~   88 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRA-GLRPGDVILAIGEQMVQN--AEDVYEAVR-TQSQLAVQIRRGRE   88 (100)
T ss_dssp             SSCEEEEEECTTSHHHHH-TCCTTCEEEEETTEECCS--HHHHHHHHT-TCSSEEEEEEETTE
T ss_pred             CCcEEEEEECCCchHhhc-CCCCCcEEEEECCEEcCC--HHHHHHHhc-CCCEEEEEEEECCE
Confidence            457999999999999999 999999999999999955  577777774 68899999999874

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.93  E-value=4.2e-09  Score=62.19  Aligned_cols=69  Identities=12%  Similarity=0.168  Sum_probs=55.0

Q ss_pred             CcCeEEeccCCCCCCeEEEEEcCC--------ChhhhcCCC-CCCCEEEEECCeeCCCCCHHHHHHHHHh-CCCeEEEEE
Q psy12579         41 GLGFNVMGGKEQNSPIYISRIIPG--------GVADRHGGL-KRGDQLLSVNGVSVEGEDHGKAVELLKQ-AQRSVKLVV  110 (138)
Q Consensus        41 ~~G~~l~~~~~~~~~v~V~~v~~g--------s~a~~~~gl-~~gD~i~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v  110 (138)
                      .+|..+...   +.++.|..+.+|        |||+++ |+ ++||.|++|||.++.++  .++..+++. .+..+.|++
T Consensus         2 ~lG~d~~~~---~~~~~I~~i~~G~~~~~~~~sPa~~a-Gl~k~GD~I~~IdG~~v~~~--~~~~~~l~g~~G~~V~L~i   75 (91)
T d1k32a1           2 RIACDFKLD---GDHYVVAKAYAGDYSNEGEKSPIFEY-GIDPTGYLIEDIDGETVGAG--SNIYRVLSEKAGTSARIRL   75 (91)
T ss_dssp             BCSEEEEEE---TTEEEEEEECBSCTTSTTCBCGGGGG-TCCCTTCEEEEETTEECBTT--BCHHHHHHTTTTSEEEEEE
T ss_pred             cccEEEEEE---CCeEEEEEEecCCCCCcccCChhHhc-CCCCCCCEEEEECCEeecCc--ceeEEEEecCCCCEEEEEE
Confidence            466666543   346899999987        999999 88 79999999999999765  466777766 578899999


Q ss_pred             EECCc
Q psy12579        111 RYTPK  115 (138)
Q Consensus       111 ~r~~~  115 (138)
                      .|.+.
T Consensus        76 ~R~g~   80 (91)
T d1k32a1          76 SGKGG   80 (91)
T ss_dssp             ECSSS
T ss_pred             EeCCC
Confidence            99764

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=1.6e-09  Score=64.42  Aligned_cols=61  Identities=20%  Similarity=0.324  Sum_probs=52.0

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV  116 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~  116 (138)
                      ..|++|..|.++|||+++ ||+.||.|++|||.++.+.  .+...++..  .+..+.+++.|++..
T Consensus        26 ~~Gv~V~~V~~~spA~~a-Gl~~gDvI~~i~g~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~   88 (94)
T d1ky9a1          26 QRGAFVSQVLPNSSAAKA-GIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKQ   88 (94)
T ss_dssp             CCSEECCCCTTCSSSTTT-TCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSCE
T ss_pred             CCCcEEEECCCChhHHHh-CCCcccEEEEECCEEeCCH--HHHHHHHHhCCCCCEEEEEEEECCEE
Confidence            457999999999999999 9999999999999999765  666667654  478899999998753

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=1.3e-09  Score=65.51  Aligned_cols=60  Identities=18%  Similarity=0.293  Sum_probs=45.9

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCc
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPK  115 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~  115 (138)
                      ..|++|..|.++|||+++ ||+.||.|++|||.++.+.  .+....+..  .++.+.+++.|++.
T Consensus        25 ~~Gv~V~~V~~~spA~~a-Gl~~GDiI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~   86 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANA-GIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDK   86 (99)
T ss_dssp             --CEECCCCCSSSTTTSS-SCCTTCEECBSSSSBCCCS--HHHHHHHHHSCTTCEEEECC-----
T ss_pred             CCccEEEEecCCCCHHHc-CCCcceEEEEECCEecccH--HHHHHHHHcCCCCCEEEEEEEECCE
Confidence            457999999999999999 9999999999999999775  555566644  47889999998864

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.67  E-value=4.1e-08  Score=59.10  Aligned_cols=58  Identities=19%  Similarity=0.287  Sum_probs=49.5

Q ss_pred             CCCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECC
Q psy12579         53 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTP  114 (138)
Q Consensus        53 ~~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~  114 (138)
                      ..|++|..|.+++||+.  +|+.||.|++|||..+.+  ..+....+..  .|..+.|++.|+.
T Consensus         2 p~Gv~V~~V~~~sPA~~--~L~~GD~I~~ing~~v~~--~~~l~~~i~~~~~G~~v~l~v~R~~   61 (103)
T d2hgaa1           2 PDGVQIDSVVPGSPASK--VLTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITTDQGT   61 (103)
T ss_dssp             CCCEEEEEECSSSGGGG--TSCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEETTEE
T ss_pred             CCcEEEEEECCCChHHh--cCCCCCEEEEECCEEcCC--HHHHHHHHhhCCCCCEEEEEEEECC
Confidence            35799999999999975  499999999999999954  6888888865  4789999998864

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.67  E-value=1.6e-08  Score=59.13  Aligned_cols=60  Identities=17%  Similarity=0.187  Sum_probs=50.3

Q ss_pred             CCeEEEEEcCCChhhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHh--CCCeEEEEEEECCch
Q psy12579         54 SPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEDHGKAVELLKQ--AQRSVKLVVRYTPKV  116 (138)
Q Consensus        54 ~~v~V~~v~~gs~a~~~~gl~~gD~i~~ing~~v~~~~~~~~~~~l~~--~~~~v~l~v~r~~~~  116 (138)
                      .|+.|..+.++++++.+ ||+.||.|++|||.++.+  ..+...++..  .+..+.+++.|++..
T Consensus        19 ~G~~v~~v~~~s~~~~a-Gl~~GDiI~~ing~~v~~--~~~~~~~~~~~~~~~~~~l~v~R~g~~   80 (87)
T d2i6va1          19 LGYRVSPGKDPVLFESI-GLQDGDMAVALNGLDLTD--PNVMNTLFQSMNEMTEMSLTVERDGQQ   80 (87)
T ss_dssp             EEEEEEECSCHHHHHHT-TCCTTCEEEEETTEETTC--HHHHHHHHHTGGGCSEEEEEEEETTEE
T ss_pred             EEEEEecCCCCCHHHHC-CCCCCCEEEEECCEEeec--HHHHHHHHHhhccccccEEEEEECCEE
Confidence            35778888999999999 999999999999999965  4666677655  478999999998754