Psyllid ID: psy12583

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MNEPLVDSEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCYFLNVENVER
Secondary Structure (PSIPRED)
ccccEEEEccccccccHHHcccccccEEEEEccEEccccccHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEcccccccEEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccEEccccccccHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEEEccccccccccccEEEEcEEccc
Coil and Loop (DISEMBL)
mneplvdsegyprqdvdvyqglvkddiilefgpinssnfksLQDIASTVragvntdipitvlrnegtrqrlvlrpqpfegqglvgcyflnvenver
Flexible Loop (DISEMBL)
mneplvdsegyprqdVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVragvntdipitvlrnegtrqrlvlrpqpfegqglvgcyflnvenver
Low Complexity Region (SEG)
MNEPLVDSEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCYFLNVENVER
Disordered region (IsUnstruct)
**************DVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCYFLNVE****
Disordered Region (DISOPRED)
*NEPLVDSEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCYFLNVEN***
Disordered Region (DISEMBL)
*********GYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCYFLNVENVER
Disordered Region (DISPRO)
******DSE*YPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCYFLNVENVE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNEPLVDSEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCYFLNVENVER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q3SZ19	221	26S proteasome non-ATPase	yes	N/A	0.708	0.307	0.434	4e-09
O00233	223	26S proteasome non-ATPase	yes	N/A	0.708	0.304	0.405	4e-08
Q9WTV5	222	26S proteasome non-ATPase	yes	N/A	0.677	0.292	0.393	1e-07
Q9CR00	222	26S proteasome non-ATPase	yes	N/A	0.708	0.306	0.376	1e-07
Q10920	197	Probable 26S proteasome n	yes	N/A	0.677	0.329	0.348	8e-06

>sp|Q3SZ19|PSMD9_BOVIN 26S proteasome non-ATPase regulatory subunit 9 OS=Bos taurus GN=PSMD9 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 21  GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
           GL  DD ILEFG +N+ NF+SLQ+I S V+      + +TV+R  G + +L L P  + G
Sbjct: 150 GLQVDDEILEFGSVNTQNFQSLQNIGSVVQHSEGKPLNVTVMRR-GEKHQLRLVPTRWAG 208

Query: 81  QGLVGCYFL 89
           +GL+GC  +
Sbjct: 209 KGLLGCNII 217

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.
Bos taurus (taxid: 9913)

>sp|O00233|PSMD9_HUMAN 26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens GN=PSMD9 PE=1 SV=3

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)

Query: 21  GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
           GL  DD I+EFG +N+ NF+SL +I S V+      + +TV+R  G + +L L P  + G
Sbjct: 152 GLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRR-GEKHQLRLVPTRWAG 210

Query: 81  QGLVGCYFL 89
           +GL+GC  +
Sbjct: 211 KGLLGCNII 219

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.

Homo sapiens (taxid: 9606)

>sp|Q9WTV5|PSMD9_RAT 26S proteasome non-ATPase regulatory subunit 9 OS=Rattus norvegicus GN=Psmd9 PE=1 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 21  GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
           GL  DD I+EFG +N+ NF+SLQ++ + V+      + + V+R  G + +L L P  + G
Sbjct: 151 GLQVDDEIVEFGSVNTQNFQSLQNVGTVVQHSEGKPLNVMVIRR-GEKHQLRLTPTRWAG 209

Query: 81  QGLVGC 86
           +GL+GC
Sbjct: 210 KGLLGC 215

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.

Rattus norvegicus (taxid: 10116)

>sp|Q9CR00|PSMD9_MOUSE 26S proteasome non-ATPase regulatory subunit 9 OS=Mus musculus GN=Psmd9 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 21  GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
           GL  DD I+EFG +N+ NF+S+Q++ + V+      + +TV+R  G + +L L P  + G
Sbjct: 151 GLQVDDEIVEFGSVNTQNFQSVQNVGTVVQHSEGKPLNVTVIR-RGEKHQLRLIPTRWAG 209

Query: 81  QGLVGCYFL 89
           +GL+GC  +
Sbjct: 210 KGLLGCNII 218

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.

Mus musculus (taxid: 10090)

>sp|Q10920|PSMD9_CAEEL Probable 26S proteasome non-ATPase regulatory subunit 9 OS=Caenorhabditis elegans GN=C44B7.1 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 21  GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
           G  KDD+I+++G ++  NF  +Q++A   +   +  I +TV+R E    RL + P+ + G
Sbjct: 123 GFRKDDLIIQYGNLHHGNFNDMQEVAQITKQSEDKIIRVTVIR-ENRPVRLEICPKKWSG 181

Query: 81  QGLVGC 86
            GL+GC
Sbjct: 182 PGLLGC 187

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the 19S regulatory complex (RC).

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
307191076	140	26S proteasome non-ATPase regulatory sub	0.989	0.678	0.5	2e-16
242010661	203	26S proteasome non-ATPase regulatory sub	0.781	0.369	0.486	2e-11
170040003	217	26S proteasome non-ATPase regulatory sub	0.895	0.396	0.395	1e-09
157137956	228	26S proteasome non-atpase regulatory sub	0.864	0.364	0.386	4e-09
321449678	204	hypothetical protein DAPPUDRAFT_302228 [	0.875	0.411	0.382	6e-09
91085583	201	PREDICTED: similar to 26S proteasome non	0.645	0.308	0.478	2e-08
345489493	195	PREDICTED: 26S proteasome non-ATPase reg	0.791	0.389	0.415	3e-08
345489489	208	PREDICTED: 26S proteasome non-ATPase reg	0.781	0.360	0.421	3e-08
57525182	207	26S proteasome non-ATPase regulatory sub	0.677	0.314	0.469	6e-08
326929670	176	PREDICTED: 26S proteasome non-ATPase reg	0.708	0.386	0.449	6e-08

>gi|307191076|gb|EFN74816.1| 26S proteasome non-ATPase regulatory subunit 9 [Camponotus floridanus]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 62/96 (64%), Gaps = 1/96 (1%)

Query: 1   MNEPLVDSEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPIT 60
           M+E LVDSEGYPRQD+DVYQG+  +D+ILEFG I+  NFKSL DI   V       I + 
Sbjct: 46  MDESLVDSEGYPRQDIDVYQGIQVEDLILEFGSIHYRNFKSLTDIGKLVENSRYKVINLK 105

Query: 61  VLRNEGTRQRLVLRPQPFEGQGLVGCYFLNVENVER 96
           + R       L L P+P+ G+GL+GC  + +E VER
Sbjct: 106 IKRGSNVI-VLSLTPRPWVGKGLLGCNVIPLEIVER 140

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010661|ref|XP_002426079.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis] gi|212510107|gb|EEB13341.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 21  GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
           GL  DD IL FG IN  NFKSLQ+I +  +  V   +P+TV R  G  ++L+L P  + G
Sbjct: 129 GLQVDDFILSFGSINYDNFKSLQEIGAVTQHSVGKKVPVTVKRF-GVTKKLILIPNTWSG 187

Query: 81  QGLVGCYFLNVENVER 96
           +GL+GC  L VE+VER
Sbjct: 188 KGLLGCNILPVEHVER 203

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170040003|ref|XP_001847804.1| 26S proteasome non-ATPase regulatory subunit 9 [Culex quinquefasciatus] gi|167863584|gb|EDS26967.1| 26S proteasome non-ATPase regulatory subunit 9 [Culex quinquefasciatus]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 6   VDSEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE 65
           V SEG P QD     G+   D I+EFG +N+ NF+ L  IA  V++  N  +P+ V R +
Sbjct: 132 VVSEGSPAQDA----GIALRDEIVEFGTVNAGNFRDLSQIAVVVKSCENKSVPVRV-RRD 186

Query: 66  GTRQRLVLRPQPFEGQGLVGCYFLNVENVER 96
           G    LVL P+ + G+GL+GC  + ++++ER
Sbjct: 187 GKMVDLVLTPKTWSGRGLLGCNIVPMDSIER 217

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157137956|ref|XP_001664093.1| 26S proteasome non-atpase regulatory subunit [Aedes aegypti] gi|108869609|gb|EAT33834.1| AAEL013890-PA [Aedes aegypti]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 5/88 (5%)

Query: 8   SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGT 67
           SEG P Q+     G+   D I+EFG +N+ NF+ L  IA+ VR+  N  +P+ V R +G 
Sbjct: 145 SEGSPAQEA----GIALRDEIVEFGTVNAGNFRELSQIAAVVRSCENKTVPVKV-RRDGK 199

Query: 68  RQRLVLRPQPFEGQGLVGCYFLNVENVE 95
              LVL P+ + G+GL+GC  + +++V+
Sbjct: 200 LVELVLTPKSWSGRGLLGCNIVPMDSVD 227

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321449678|gb|EFX62012.1| hypothetical protein DAPPUDRAFT_302228 [Daphnia pulex] gi|321474924|gb|EFX85888.1| hypothetical protein DAPPUDRAFT_309024 [Daphnia pulex]

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 5/89 (5%)

Query: 8   SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGT 67
           +EG P +      GL  DD+IL FG + +SNF SL+D+A  V+  +  +IP+ + R E  
Sbjct: 121 TEGSPAEKA----GLKADDLILGFGSLRASNFSSLKDVAQIVQHRLECEIPLCIRRLEVL 176

Query: 68  RQRLVLRPQPFEGQGLVGCYFLNVENVER 96
            Q + L P+P+ G+G +GC  L  + V+R
Sbjct: 177 MQ-ITLIPKPWNGKGFLGCVVLPFDTVDR 204

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085583|ref|XP_968374.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 9 [Tribolium castaneum] gi|270010071|gb|EFA06519.1| hypothetical protein TcasGA2_TC009422 [Tribolium castaneum]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 7/69 (10%)

Query: 21  GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRL---VLRPQP 77
           GL  DD I+EFG INSSNFK+L D+A+ V+   +  IP+ V R     QR+   VL P+ 
Sbjct: 131 GLHADDFIVEFGSINSSNFKNLSDVATVVQHSEDNQIPVKVKRG----QRIVPTVLVPKK 186

Query: 78  FEGQGLVGC 86
           ++G+GL+GC
Sbjct: 187 WQGRGLLGC 195

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489493|ref|XP_001602875.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like isoform 1 [Nasonia vitripennis]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 20  QGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFE 79
           +G+  DD+ILEFG I++SNFK+L+DI + V      ++ + + R   T   L L P+P+ 
Sbjct: 120 RGIQVDDLILEFGSISNSNFKTLKDIGTLVENSRYKNVEMKIKRGSNTFA-LTLIPRPWS 178

Query: 80  GQGLVGCYFLNVENVER 96
           G+GL+GC  + +E VER
Sbjct: 179 GKGLLGCNVVPLEAVER 195

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489489|ref|XP_003426148.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like isoform 2 [Nasonia vitripennis] gi|345489491|ref|XP_003426149.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like isoform 3 [Nasonia vitripennis]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 21  GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
           G+  DD+ILEFG I++SNFK+L+DI + V      ++ + + R   T   L L P+P+ G
Sbjct: 134 GIQVDDLILEFGSISNSNFKTLKDIGTLVENSRYKNVEMKIKRGSNTFA-LTLIPRPWSG 192

Query: 81  QGLVGCYFLNVENVER 96
           +GL+GC  + +E VER
Sbjct: 193 KGLLGCNVVPLEAVER 208

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|57525182|ref|NP_001006189.1| 26S proteasome non-ATPase regulatory subunit 9 [Gallus gallus] gi|53133386|emb|CAG32022.1| hypothetical protein RCJMB04_16d3 [Gallus gallus]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 21  GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
           GL  DD I+EFG +N  NFKSLQ+IA+ V+      + +TV+RN G +  L L P+ + G
Sbjct: 136 GLQVDDEIVEFGSVNVHNFKSLQNIATVVQHSEGRPLSVTVIRN-GKKVHLGLTPKRWAG 194

Query: 81  QGLVGC 86
           +GL+GC
Sbjct: 195 KGLLGC 200

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326929670|ref|XP_003210980.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like, partial [Meleagris gallopavo]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 21  GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
           GL  DD I+EFG +N  NFKSLQ+IA+ V+      + +TV+RN G +  L L P+ + G
Sbjct: 105 GLQVDDEIVEFGSVNVHNFKSLQNIAAVVQHSEGRPLSVTVIRN-GKKVHLGLTPKRWAG 163

Query: 81  QGLVGCYFL 89
           +GL+GC  +
Sbjct: 164 KGLLGCNII 172

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
UNIPROTKB|Q3SZ19	221	PSMD9 "26S proteasome non-ATPa	0.739	0.321	0.416	2.7e-18
UNIPROTKB|O00233	223	PSMD9 "26S proteasome non-ATPa	0.739	0.318	0.388	2.3e-17
MGI|MGI:1914401	222	Psmd9 "proteasome (prosome, ma	0.739	0.319	0.361	5.1e-17
RGD|621110	222	Psmd9 "proteasome (prosome, ma	0.75	0.324	0.368	6.7e-17
TAIR|locus:2174453	227	AT5G57950 "AT5G57950" [Arabido	0.687	0.290	0.294	6.1e-09
SGD|S000001269	220	NAS2 "Proteasome-interacting p	0.635	0.277	0.317	1.1e-08
UNIPROTKB|Q10920	197	C44B7.1 "Probable 26S proteaso	0.864	0.421	0.337	4.2e-08
CGD|CAL0000640	231	orf19.2301 [Candida albicans (	0.729	0.303	0.342	7.9e-08
UNIPROTKB|Q59WK1	231	CaO19.1014 "Putative uncharact	0.729	0.303	0.342	7.9e-08
FB|FBgn0038166	220	CG9588 [Drosophila melanogaste	0.677	0.295	0.417	1.5e-06

UNIPROTKB|Q3SZ19 PSMD9 "26S proteasome non-ATPase regulatory subunit 9" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 30/72 (41%), Positives = 46/72 (63%)

Query:    21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
             GL  DD ILEFG +N+ NF+SLQ+I S V+      + +TV+R  G + +L L P  + G
Sbjct:   150 GLQVDDEILEFGSVNTQNFQSLQNIGSVVQHSEGKPLNVTVMRR-GEKHQLRLVPTRWAG 208

Query:    81 QGLVGCYFLNVE 92
             +GL+GC  + ++
Sbjct:   209 KGLLGCNIIPLQ 220

GO:0070682 "proteasome regulatory particle assembly" evidence=ISS

UNIPROTKB|O00233 PSMD9 "26S proteasome non-ATPase regulatory subunit 9" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
 Identities = 28/72 (38%), Positives = 45/72 (62%)

Query:    21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
             GL  DD I+EFG +N+ NF+SL +I S V+      + +TV+R  G + +L L P  + G
Sbjct:   152 GLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRR-GEKHQLRLVPTRWAG 210

Query:    81 QGLVGCYFLNVE 92
             +GL+GC  + ++
Sbjct:   211 KGLLGCNIIPLQ 222

GO:0005838 "proteasome regulatory particle" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0046676 "negative regulation of insulin secretion" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0032024 "positive regulation of insulin secretion" evidence=ISS

GO:0043425 "bHLH transcription factor binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

MGI|MGI:1914401 Psmd9 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" [Mus musculus (taxid:10090)]

 Score = 131 (51.2 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
 Identities = 26/72 (36%), Positives = 46/72 (63%)

Query:    21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
             GL  DD I+EFG +N+ NF+S+Q++ + V+      + +TV+R  G + +L L P  + G
Sbjct:   151 GLQVDDEIVEFGSVNTQNFQSVQNVGTVVQHSEGKPLNVTVIRR-GEKHQLRLIPTRWAG 209

Query:    81 QGLVGCYFLNVE 92
             +GL+GC  + ++
Sbjct:   210 KGLLGCNIIPLQ 221

GO:0000502 "proteasome complex" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0032024 "positive regulation of insulin secretion" evidence=ISO;ISS

GO:0043425 "bHLH transcription factor binding" evidence=ISO;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046676 "negative regulation of insulin secretion" evidence=ISO;ISS

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO

RGD|621110 Psmd9 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 9" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 6.7e-17, Sum P(2) = 6.7e-17
 Identities = 28/76 (36%), Positives = 47/76 (61%)

Query:    21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
             GL  DD I+EFG +N+ NF+SLQ++ + V+      + + V+R  G + +L L P  + G
Sbjct:   151 GLQVDDEIVEFGSVNTQNFQSLQNVGTVVQHSEGKPLNVMVIRR-GEKHQLRLTPTRWAG 209

Query:    81 QGLVGCYFLNVENVER 96
             +GL+GC   N+  ++R
Sbjct:   210 KGLLGC---NITPLQR 222

GO:0000502 "proteasome complex" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0032024 "positive regulation of insulin secretion" evidence=IDA

GO:0043425 "bHLH transcription factor binding" evidence=IDA;IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP;IDA

GO:0046676 "negative regulation of insulin secretion" evidence=IMP

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO;ISS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISO

TAIR|locus:2174453 AT5G57950 "AT5G57950" [Arabidopsis thaliana (taxid:3702)]

 Score = 91 (37.1 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
 Identities = 20/68 (29%), Positives = 40/68 (58%)

Query:    21 GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEG 80
             GL   D +L+FG +   +   LQ +A+  ++     + + V+R +G +  L + P+ ++G
Sbjct:   159 GLQLGDQVLKFGNVEGGD-NLLQRLAAEAQSNQGQAVSVQVMR-QGAKVVLSVTPRIWQG 216

Query:    81 QGLVGCYF 88
             +GL+GC+F
Sbjct:   217 RGLLGCHF 224

GO:0005838 "proteasome regulatory particle" evidence=ISS

GO:0035556 "intracellular signal transduction" evidence=ISS

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

SGD|S000001269 NAS2 "Proteasome-interacting protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 89 (36.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query:    25 DDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP-QPFEGQGL 83
             DD ++  G ++++N   LQ+I   V    +  +P+ +LR EG   +  L P + + G+GL
Sbjct:   154 DDKLISIGNVHAANHSKLQNIQMVVMKNEDRPLPVLLLR-EGQILKTSLTPSRNWNGRGL 212

Query:    84 VGC 86
             +GC
Sbjct:   213 LGC 215

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=IGI;IDA;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q10920 C44B7.1 "Probable 26S proteasome non-ATPase regulatory subunit 9" [Caenorhabditis elegans (taxid:6239)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 29/86 (33%), Positives = 47/86 (54%)

Query:     2 NEPLVD-SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPIT 60
             NEP V  S        D+  G  KDD+I+++G ++  NF  +Q++A   +   +  I +T
Sbjct:   104 NEPFVKISSVVELSPADI-GGFRKDDLIIQYGNLHHGNFNDMQEVAQITKQSEDKIIRVT 162

Query:    61 VLRNEGTRQRLVLRPQPFEGQGLVGC 86
             V+R E    RL + P+ + G GL+GC
Sbjct:   163 VIR-ENRPVRLEICPKKWSGPGLLGC 187

GO:0005515 "protein binding" evidence=IPI

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0000640 orf19.2301 [Candida albicans (taxid:5476)]

 Score = 86 (35.3 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
 Identities = 25/73 (34%), Positives = 40/73 (54%)

Query:    21 GLVKDDIILEFGP-INSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP-F 78
             GL + D I+ F   I+++N   L  + S VR+  N +I + + R E  R  L L P   +
Sbjct:   160 GLKEGDQIIVFDDDIHAANNNKLGSLVSRVRSKQNEEIKVDLKRGE-ERITLKLIPSDNW 218

Query:    79 EGQGLVGCYFLNV 91
             +GQGL+GC  + +
Sbjct:   219 DGQGLLGCRLIPI 231

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

UNIPROTKB|Q59WK1 CaO19.1014 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 86 (35.3 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
 Identities = 25/73 (34%), Positives = 40/73 (54%)

Query:    21 GLVKDDIILEFGP-INSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP-F 78
             GL + D I+ F   I+++N   L  + S VR+  N +I + + R E  R  L L P   +
Sbjct:   160 GLKEGDQIIVFDDDIHAANNNKLGSLVSRVRSKQNEEIKVDLKRGE-ERITLKLIPSDNW 218

Query:    79 EGQGLVGCYFLNV 91
             +GQGL+GC  + +
Sbjct:   219 DGQGLLGCRLIPI 231

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0038166 CG9588 [Drosophila melanogaster (taxid:7227)]

 Score = 113 (44.8 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 28/67 (41%), Positives = 38/67 (56%)

Query:    21 GLVKDDIILEFGPINSSNFKS-LQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFE 79
             GL   D IL FG INS NFK  L  I   VR   + ++ + V R E  +  L+L P+ + 
Sbjct:   144 GLCAGDAILRFGSINSGNFKGDLAQIGELVRNMQSQNVQLKVKRGE-QQLDLILVPKTWS 202

Query:    80 GQGLVGC 86
             G+GL+GC
Sbjct:   203 GRGLLGC 209

GO:0005838 "proteasome regulatory particle" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
KOG3129|consensus	231		99.75
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.48
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	99.36
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	99.36
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.3
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	99.29
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.29
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	99.29
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	99.28
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.24
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	99.14
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	99.14
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.05
PRK10139	455	serine endoprotease; Provisional	99.01
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.99
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.98
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.98
PRK10898	353	serine endoprotease; Provisional	98.97
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	98.93
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.93
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.93
PRK10139	455	serine endoprotease; Provisional	98.9
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.88
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.83
PRK10942	473	serine endoprotease; Provisional	98.82
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.8
PRK10942	473	serine endoprotease; Provisional	98.75
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.62
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.6
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.6
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.53
PRK11186	667	carboxy-terminal protease; Provisional	98.45
PRK09681	276	putative type II secretion protein GspC; Provision	98.39
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	98.22
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	98.18
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	98.18
KOG1421|consensus	955		97.85
KOG3834|consensus	462		97.74
COG0750	375	Predicted membrane-associated Zn-dependent proteas	97.49
KOG3553|consensus	124		97.45
KOG3209|consensus	984		97.36
KOG3834|consensus	462		97.33
COG3975	558	Predicted protease with the C-terminal PDZ domain	97.3
COG3031	275	PulC Type II secretory pathway, component PulC [In	97.29
KOG3580|consensus	1027		97.02
KOG1320|consensus	473		96.9
KOG3580|consensus	1027		96.84
KOG3651|consensus	429		95.75
KOG3605|consensus	829		95.6
PF12812	78	PDZ_1: PDZ-like domain	95.24
KOG3209|consensus	984		95.22
KOG3532|consensus	1051		95.11
KOG3550|consensus	207		94.35
KOG1421|consensus	955		94.32
KOG3542|consensus	1283		93.52
KOG3552|consensus	1298		93.45
KOG0606|consensus	1205		93.01
KOG3551|consensus	506		92.49
KOG0609|consensus	542		90.86
KOG3606|consensus	358		90.18
KOG3571|consensus	626		89.74
KOG1892|consensus	1629		89.43
KOG2921|consensus	484		88.89
KOG3549|consensus	505		83.95

>KOG3129|consensus

Probab=99.75  E-value=4.3e-18  Score=120.47  Aligned_cols=79  Identities=35%  Similarity=0.647  Sum_probs=69.3

Q ss_pred             CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecCCCCeeeEEEE-
Q psy12583          9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCY-   87 (96)
Q Consensus         9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~~~~~~~lGi~-   87 (96)
                      ++|||+    +|||+.||.|++|+++...+...+..+....+.+.++++.++|.|.+ +.+.+.++|..|.|+|+|||. 
T Consensus       148 ~~SPA~----~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g-~~v~L~ltP~~W~GrGLLGC~~  222 (231)
T KOG3129|consen  148 PGSPAD----EAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREG-QKVVLSLTPKKWQGRGLLGCNY  222 (231)
T ss_pred             CCChhh----hhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCC-CEEEEEeCcccccCCcceeeee
Confidence            444555    55999999999999988777777889999999999999999999999 999999999999999999999 


Q ss_pred             Eecce
Q psy12583         88 FLNVE   92 (96)
Q Consensus        88 ~~~~~   92 (96)
                      +.|+.
T Consensus       223 i~pi~  227 (231)
T KOG3129|consen  223 IQPIL  227 (231)
T ss_pred             ecccc
Confidence            55543

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.48  E-value=1.8e-13  Score=83.33  Aligned_cols=59  Identities=24%  Similarity=0.347  Sum_probs=51.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHH-hCCCceEEEEEEeCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVR-AGVNTDIPITVLRNEGTRQRLVLR   74 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~-~~~g~~i~l~V~R~g~~~~~l~v~   74 (96)
                      .+++||+    +|||++||.|++|||.+   +.++.++..++. ..+|.+++++|+|++ +.++++++
T Consensus        22 ~~~spA~----~aGl~~GD~I~~ing~~---v~~~~~~~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~   81 (82)
T PF13180_consen   22 IPGSPAA----KAGLQPGDIILAINGKP---VNSSEDLVNILSKGKPGDTVTLTVLRDG-EELTVEVT   81 (82)
T ss_dssp             STTSHHH----HTTS-TTEEEEEETTEE---SSSHHHHHHHHHCSSTTSEEEEEEEETT-EEEEEEEE
T ss_pred             CCCCcHH----HCCCCCCcEEEEECCEE---cCCHHHHHHHHHhCCCCCEEEEEEEECC-EEEEEEEE
Confidence            5889999    99999999999999976   578888888884 567899999999999 88888775

...

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=99.36  E-value=6.5e-12  Score=76.17  Aligned_cols=59  Identities=22%  Similarity=0.280  Sum_probs=51.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLR   74 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~   74 (96)
                      .+++||+    ++||++||+|++|||.+   +.+|.++...+... ++.++.+++.|++ +..+++++
T Consensus        18 ~~~spa~----~aGL~~GDiI~~Ing~~---v~~~~d~~~~l~~~~~g~~v~l~v~r~g-~~~~~~~~   77 (79)
T cd00991          18 IVGSPAE----NAVLHTGDVIYSINGTP---ITTLEDFMEALKPTKPGEVITVTVLPST-TKLTNVST   77 (79)
T ss_pred             CCCChHH----hcCCCCCCEEEEECCEE---cCCHHHHHHHHhcCCCCCEEEEEEEECC-EEEEEEEE
Confidence            4789999    99999999999999966   57889999999875 5789999999999 88877765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=99.36  E-value=5.3e-12  Score=75.47  Aligned_cols=60  Identities=30%  Similarity=0.413  Sum_probs=52.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p   75 (96)
                      .+++||+    ++||++||+|++|||.+   +.+|.++...++...+..+.+++.|++ +..++.+.|
T Consensus        20 ~~~s~a~----~~gl~~GD~I~~ing~~---i~~~~~~~~~l~~~~~~~~~l~v~r~~-~~~~~~l~~   79 (79)
T cd00989          20 VPGSPAA----KAGLKAGDRILAINGQK---IKSWEDLVDAVQENPGKPLTLTVERNG-ETITLTLTP   79 (79)
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHHCCCceEEEEEEECC-EEEEEEecC
Confidence            4779999    99999999999999966   578899999998877788999999999 888877754

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.30  E-value=1.6e-11  Score=74.34  Aligned_cols=61  Identities=21%  Similarity=0.344  Sum_probs=52.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccH--HHHHHHHHhCCCceEEEEEEeC-CceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSL--QDIASTVRAGVNTDIPITVLRN-EGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~--~di~~~i~~~~g~~i~l~V~R~-g~~~~~l~v~p~   76 (96)
                      .+++||.    ++||++||+|++|||.+   +.+|  .++..+++.+.+.++.+++.|+ + +..++++.|.
T Consensus        21 ~~~s~a~----~~gl~~GD~I~~vng~~---i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~-~~~~~~~~~~   84 (85)
T cd00988          21 LPGSPAA----KAGIKAGDIIVAIDGEP---VDGLSLEDVVKLLRGKAGTKVRLTLKRGDG-EPREVTLTRL   84 (85)
T ss_pred             cCCCCHH----HcCCCCCCEEEEECCEE---cCCCCHHHHHHHhcCCCCCEEEEEEEcCCC-CEEEEEEEEC
Confidence            4789999    99999999999999976   4566  8888888877788999999999 8 8888888764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=99.29  E-value=2.8e-11  Score=93.10  Aligned_cols=72  Identities=22%  Similarity=0.349  Sum_probs=63.3

Q ss_pred             CCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC--CCCeeeEEEE
Q psy12583         10 GYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP--FEGQGLVGCY   87 (96)
Q Consensus        10 ~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~--~~~~~~lGi~   87 (96)
                      ++||+    +|||++||.|++|||.+   +.+|+++.++++...++++.++|.|++ +..++.+.|..  ..+.++||+.
T Consensus       123 ~SPAa----~AGLq~GDiIvsING~~---V~s~~DL~~iL~~~~g~~V~LtV~R~G-e~~tv~V~Pv~~~~d~~ykLGl~  194 (402)
T TIGR02860       123 HSPGE----EAGIQIGDRILKINGEK---IKNMDDLANLINKAGGEKLTLTIERGG-KIIETVIKPVKDKEEGRYRIGLY  194 (402)
T ss_pred             CCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHhCCCCeEEEEEEECC-EEEEEEEEEeeeCCCCCEEEEEE
Confidence            58999    99999999999999966   688999999999888899999999999 99999998863  2467899986


Q ss_pred             Ee
Q psy12583         88 FL   89 (96)
Q Consensus        88 ~~   89 (96)
                      +.
T Consensus       195 Vr  196 (402)
T TIGR02860       195 IR  196 (402)
T ss_pred             EE
Confidence            64

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>TIGR00054 RIP metalloprotease RseP

Probab=99.29  E-value=2.4e-11  Score=93.62  Aligned_cols=73  Identities=23%  Similarity=0.315  Sum_probs=61.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecCCCCeeeEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCY   87 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~~~~~~~lGi~   87 (96)
                      .++|||+    +|||++||+|++|||.+   +.+|+|+.+.++.++++++.++++|+| +..+++++|......+ +|+.
T Consensus       211 ~~~SpA~----~aGL~~GD~Iv~Vng~~---V~s~~dl~~~l~~~~~~~v~l~v~R~g-~~~~~~v~~~~~~~~~-iGi~  281 (420)
T TIGR00054       211 TPNSPAE----KAGLKEGDYIQSINGEK---LRSWTDFVSAVKENPGKSMDIKVERNG-ETLSISLTPEAKGKIG-IGIS  281 (420)
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHhCCCCceEEEEEECC-EEEEEEEEEcCCCceE-EEEe
Confidence            4789999    99999999999999966   678999999999888889999999999 9999999997532233 7876


Q ss_pred             Ee
Q psy12583         88 FL   89 (96)
Q Consensus        88 ~~   89 (96)
                      ..
T Consensus       282 ~~  283 (420)
T TIGR00054       282 PS  283 (420)
T ss_pred             cc
Confidence            43

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=99.29  E-value=5.2e-11  Score=71.80  Aligned_cols=61  Identities=20%  Similarity=0.242  Sum_probs=52.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+++||+    + ||++||.|++|||.+   +.+|+++...+.. ..+..+.+++.|++ +...+++++..
T Consensus        16 ~~~s~A~----~-gL~~GD~I~~Ing~~---v~~~~~~~~~l~~~~~~~~v~l~v~r~g-~~~~~~v~l~~   77 (79)
T cd00986          16 VEGMPAA----G-KLKAGDHIIAVDGKP---FKEAEELIDYIQSKKEGDTVKLKVKREE-KELPEDLILKT   77 (79)
T ss_pred             CCCCchh----h-CCCCCCEEEEECCEE---CCCHHHHHHHHHhCCCCCEEEEEEEECC-EEEEEEEEEec
Confidence            4789999    6 899999999999966   5788999999985 56789999999999 88888887653

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=99.28  E-value=6.6e-12  Score=84.29  Aligned_cols=75  Identities=21%  Similarity=0.352  Sum_probs=57.9

Q ss_pred             CCCCCccccccccCCCC-CCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCc-eEEEEEEeec-CCCCeeeE
Q psy12583          8 SEGYPRQDVDVYQGLVK-DDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEG-TRQRLVLRPQ-PFEGQGLV   84 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~-GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~-~~~~l~v~p~-~~~~~~~l   84 (96)
                      .+||||+    +|||++ .|.|+.+++..   +.+.+++.++++.+.++++.|.|.+... ..+.++++|. .|++.|+|
T Consensus        51 ~p~SPA~----~AGL~p~~DyIig~~~~~---l~~~~~l~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~WgG~GlL  123 (138)
T PF04495_consen   51 APNSPAA----KAGLEPFFDYIIGIDGGL---LDDEDDLFELVEANENKPLQLYVYNSKTDSVREVTITPSRNWGGRGLL  123 (138)
T ss_dssp             -TTSHHH----HTT--TTTEEEEEETTCE-----STCHHHHHHHHTTTS-EEEEEEETTTTCEEEEEE---TTSSSSTSS
T ss_pred             cCCCHHH----HCCccccccEEEEcccee---cCCHHHHHHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCCCCCCeee
Confidence            5899999    999999 69999999854   4566788899999999999999998542 6788999998 49999999


Q ss_pred             EEEEe
Q psy12583         85 GCYFL   89 (96)
Q Consensus        85 Gi~~~   89 (96)
                      ||++.
T Consensus       124 Gc~ig  128 (138)
T PF04495_consen  124 GCHIG  128 (138)
T ss_dssp             SEEEE
T ss_pred             eEEec
Confidence            99986

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.24  E-value=5.8e-11  Score=92.07  Aligned_cols=74  Identities=18%  Similarity=0.253  Sum_probs=62.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecCC--C--Ceee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPF--E--GQGL   83 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~~--~--~~~~   83 (96)
                      .+||||+    +|||++||+|++|||.+   +.+|+++.++++.++++++.++|+|+| +..+++++|...  .  ..+.
T Consensus       229 ~~~SpA~----~AGL~~GDvIl~Ing~~---V~s~~dl~~~l~~~~~~~v~l~v~R~g-~~~~~~v~~~~~~~~g~~~~~  300 (449)
T PRK10779        229 QPNSAAS----KAGLQAGDRIVKVDGQP---LTQWQTFVTLVRDNPGKPLALEIERQG-SPLSLTLTPDSKPGNGKAEGF  300 (449)
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhCCCCEEEEEEEECC-EEEEEEEEeeeecCCCceeeE
Confidence            3679999    99999999999999966   688999999999888889999999999 999999998632  1  2466


Q ss_pred             EEEEEe
Q psy12583         84 VGCYFL   89 (96)
Q Consensus        84 lGi~~~   89 (96)
                      +|+...
T Consensus       301 iGi~~~  306 (449)
T PRK10779        301 AGVVPK  306 (449)
T ss_pred             EEEecc
Confidence            898754

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=99.14  E-value=3e-10  Score=69.09  Aligned_cols=57  Identities=25%  Similarity=0.355  Sum_probs=47.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCCceEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNEGTRQRLV   72 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g~~~~~l~   72 (96)
                      .+++||.    ++||++||.|++|||.+   +.+|.++..++.... +.++.+++.|++ +.+.++
T Consensus        32 ~~~s~a~----~~gl~~GD~I~~Ing~~---i~~~~~~~~~l~~~~~~~~i~l~v~r~g-~~~~~~   89 (90)
T cd00987          32 DPGSPAA----KAGLKPGDVILAVNGKP---VKSVADLRRALAELKPGDKVTLTVLRGG-KELTVT   89 (90)
T ss_pred             CCCCHHH----HcCCCcCCEEEEECCEE---CCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEee
Confidence            3689999    99999999999999976   577888888887653 789999999999 776654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=99.14  E-value=3.1e-10  Score=68.07  Aligned_cols=58  Identities=21%  Similarity=0.330  Sum_probs=46.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .++|||+    ++||++||+|++|||.++   .+|.++   ++. ..+..+.+++.|++ +..++.+++.
T Consensus        20 ~~~s~a~----~aGl~~GD~I~~Ing~~v---~~~~~~---l~~~~~~~~v~l~v~r~g-~~~~~~v~~~   78 (80)
T cd00990          20 RDDSPAD----KAGLVAGDELVAVNGWRV---DALQDR---LKEYQAGDPVELTVFRDD-RLIEVPLTLA   78 (80)
T ss_pred             CCCChHH----HhCCCCCCEEEEECCEEh---HHHHHH---HHhcCCCCEEEEEEEECC-EEEEEEEEec
Confidence            4789999    999999999999999764   446554   443 36678999999999 8888887764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.05  E-value=1.6e-09  Score=83.37  Aligned_cols=76  Identities=17%  Similarity=0.311  Sum_probs=60.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecCC------CC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQPF------EG   80 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~~------~~   80 (96)
                      .+++||+    ++||++||+|++|||.+   +.+|.++..++.. ..+..++++|.|++ +.+++++++..+      ..
T Consensus       265 ~~~spA~----~aGL~~GDvI~~Vng~~---i~~~~~~~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~l~~~~~~~~~~~  336 (428)
T TIGR02037       265 LPGSPAE----KAGLKAGDVILSVNGKP---ISSFADLRRAIGTLKPGKKVTLGILRKG-KEKTITVTLGASPEEQASSS  336 (428)
T ss_pred             cCCCChH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEECcCCCcccccc
Confidence            4789999    99999999999999966   5788888888875 45789999999999 888888876431      11


Q ss_pred             eeeEEEEEecc
Q psy12583         81 QGLVGCYFLNV   91 (96)
Q Consensus        81 ~~~lGi~~~~~   91 (96)
                      ...+|+.+.++
T Consensus       337 ~~~lGi~~~~l  347 (428)
T TIGR02037       337 NPFLGLTVANL  347 (428)
T ss_pred             ccccceEEecC
Confidence            34578777643

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10139 serine endoprotease; Provisional

Probab=99.01  E-value=1.6e-09  Score=84.43  Aligned_cols=61  Identities=16%  Similarity=0.225  Sum_probs=54.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .++|||+    +|||++||+|++|||.+   +.+|.++...+.. ..+..+.++|.|+| +.+++++++.
T Consensus       298 ~~~SpA~----~AGL~~GDvIl~InG~~---V~s~~dl~~~l~~~~~g~~v~l~V~R~G-~~~~l~v~~~  359 (455)
T PRK10139        298 LPNSGSA----KAGVKAGDIITSLNGKP---LNSFAELRSRIATTEPGTKVKLGLLRNG-KPLEVEVTLD  359 (455)
T ss_pred             CCCChHH----HCCCCCCCEEEEECCEE---CCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEEC
Confidence            4789999    99999999999999966   6889999988876 67889999999999 9888888775

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.99  E-value=2.5e-09  Score=78.23  Aligned_cols=58  Identities=16%  Similarity=0.260  Sum_probs=50.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVL   73 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v   73 (96)
                      .+++||+    ++||++||.|++|||++   +.+|+++.+++.+. ++..++++|+|+| +.+++.+
T Consensus       199 ~~~s~a~----~aGLr~GDvIv~ING~~---i~~~~~~~~~l~~~~~~~~v~l~V~R~G-~~~~i~v  257 (259)
T TIGR01713       199 KDPSLFY----KSGLQDGDIAVALNGLD---LRDPEQAFQALQMLREETNLTLTVERDG-QREDIYV  257 (259)
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCeEEEEEEECC-EEEEEEE
Confidence            4578999    99999999999999966   67888888888875 5579999999999 8877765

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.98  E-value=1.1e-09  Score=63.99  Aligned_cols=47  Identities=30%  Similarity=0.522  Sum_probs=40.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccH--HHHHHHHHhCCCceEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSL--QDIASTVRAGVNTDIPITV   61 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~--~di~~~i~~~~g~~i~l~V   61 (96)
                      .+++||+    .+||++||+|++|||.++   .+|  .++.++++.+.+.+++|++
T Consensus        21 ~~~s~a~----~~gl~~GD~I~~Ing~~v---~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136          21 EPGSPAE----RAGLQAGDVILAVNGTDV---KNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEEC---CCCCHHHHHHHHhhCCCCeEEEEE
Confidence            4689999    999999999999999764   555  8899999988888888876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.98  E-value=3.1e-09  Score=80.26  Aligned_cols=62  Identities=16%  Similarity=0.311  Sum_probs=53.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+++||+    ++||++||+|++|||++   +.+|.++.+.++. .++.++.++|.|++ +.+++.+++..
T Consensus       286 ~~~spA~----~aGL~~GDvI~~Ing~~---V~s~~dl~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~l~~  348 (351)
T TIGR02038       286 DPNGPAA----RAGILVRDVILKYDGKD---VIGAEELMDRIAETRPGSKVMVTVLRQG-KQLELPVTIDE  348 (351)
T ss_pred             CCCChHH----HCCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEecC
Confidence            4789999    99999999999999966   6788999888876 67789999999999 98888887653

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10898 serine endoprotease; Provisional

Probab=98.97  E-value=4.1e-09  Score=79.78  Aligned_cols=62  Identities=21%  Similarity=0.280  Sum_probs=53.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+++||+    ++||++||+|++|||++   +.+|.++.+.+.. ..+..+.++|.|++ +.+++.+++..
T Consensus       287 ~~~spA~----~aGL~~GDvI~~Ing~~---V~s~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~l~~  349 (353)
T PRK10898        287 SPDGPAA----KAGIQVNDLIISVNNKP---AISALETMDQVAEIRPGSVIPVVVMRDD-KQLTLQVTIQE  349 (353)
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEecc
Confidence            4789999    99999999999999966   5788888888876 67789999999999 98888888754

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=98.93  E-value=3.7e-09  Score=82.09  Aligned_cols=68  Identities=15%  Similarity=0.194  Sum_probs=54.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEE-eCCceEEEEEEeecCCCCeeeEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVL-RNEGTRQRLVLRPQPFEGQGLVGC   86 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~-R~g~~~~~l~v~p~~~~~~~~lGi   86 (96)
                      .+||||+    +|||++||+|++|||++   +.+|.|+..++.   +..+.++|+ |+| +..++++.|...   .-+|+
T Consensus         6 ~pgSpAe----~AGLe~GD~IlsING~~---V~Dw~D~~~~l~---~e~l~L~V~~rdG-e~~~l~Ie~~~d---edlG~   71 (433)
T TIGR03279         6 LPGSIAE----ELGFEPGDALVSINGVA---PRDLIDYQFLCA---DEELELEVLDANG-ESHQIEIEKDLD---EDLGL   71 (433)
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHhc---CCcEEEEEEcCCC-eEEEEEEecCCC---CCCcE
Confidence            5799999    99999999999999966   588988887774   357899997 889 999999888642   12566


Q ss_pred             EEe
Q psy12583         87 YFL   89 (96)
Q Consensus        87 ~~~   89 (96)
                      .+.
T Consensus        72 ~f~   74 (433)
T TIGR03279        72 EFT   74 (433)
T ss_pred             Eec
Confidence            654

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.93  E-value=5.4e-09  Score=79.96  Aligned_cols=63  Identities=19%  Similarity=0.339  Sum_probs=53.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .+||||+    +|||++||+|++|||.++.++ ++.++...++...+.++.++|.|++ +..+++++..
T Consensus       110 ~~~SPA~----~aGl~~GD~Iv~InG~~v~~~-~~~~~~~~l~g~~g~~v~ltv~r~g-~~~~~~l~r~  172 (389)
T PLN00049        110 APGGPAA----RAGIRPGDVILAIDGTSTEGL-SLYEAADRLQGPEGSSVELTLRRGP-ETRLVTLTRE  172 (389)
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEee
Confidence            4789999    999999999999999886553 5678888888778899999999999 8888777653

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.93  E-value=2.6e-09  Score=82.93  Aligned_cols=60  Identities=10%  Similarity=-0.016  Sum_probs=49.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~p   75 (96)
                      .++|||+    +||||+||+|++|||++   +.+|+++...+... ++.+++++|.|++ +..+++++.
T Consensus       134 ~~~SpA~----kAGLk~GDvI~~vnG~~---V~~~~~l~~~v~~~~~g~~v~v~v~R~g-k~~~~~v~l  194 (449)
T PRK10779        134 APNSIAA----QAQIAPGTELKAVDGIE---TPDWDAVRLALVSKIGDESTTITVAPFG-SDQRRDKTL  194 (449)
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhhccCCceEEEEEeCC-ccceEEEEe
Confidence            4789999    99999999999999966   68889988777654 4568999999999 766555544

>PRK10139 serine endoprotease; Provisional

Probab=98.90  E-value=6.3e-09  Score=81.16  Aligned_cols=57  Identities=25%  Similarity=0.401  Sum_probs=49.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVL   73 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v   73 (96)
                      .+++||+    ++||++||+|++|||.+   +.+|+++.+.+++++ +++.++|+|++ +.+.+.+
T Consensus       398 ~~~spA~----~aGL~~GD~I~~Ing~~---v~~~~~~~~~l~~~~-~~v~l~v~R~g-~~~~~~~  454 (455)
T PRK10139        398 VKGSPAA----QAGLQKDDVIIGVNRDR---VNSIAEMRKVLAAKP-AIIALQIVRGN-ESIYLLL  454 (455)
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhCC-CeEEEEEEECC-EEEEEEe
Confidence            3689999    99999999999999965   688999999998865 79999999999 8776654

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.88  E-value=6.3e-09  Score=77.88  Aligned_cols=62  Identities=23%  Similarity=0.384  Sum_probs=49.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p   75 (96)
                      .+++||+    +|||++||+|++|||.++.++ ++.++...++...+.++.+++.|++ +...+++++
T Consensus        70 ~~~spA~----~aGL~~GD~I~~Ing~~v~~~-~~~~~~~~l~~~~g~~v~l~v~R~g-~~~~~~v~l  131 (334)
T TIGR00225        70 FEGSPAE----KAGIKPGDKIIKINGKSVAGM-SLDDAVALIRGKKGTKVSLEILRAG-KSKPLTFTL  131 (334)
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHhccCCCCCEEEEEEEeCC-CCceEEEEE
Confidence            4789999    999999999999999875443 2467777787778899999999998 655555444

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.83  E-value=9.6e-09  Score=61.96  Aligned_cols=49  Identities=24%  Similarity=0.377  Sum_probs=41.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVL   62 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~   62 (96)
                      .+++||+    ++||++||+|++|||+++.++ +..++.+.++...+ +++|+|+
T Consensus        33 ~~~~~a~----~~gl~~GD~Il~INg~~v~~~-~~~~~~~~l~~~~~-~v~L~V~   81 (81)
T PF00595_consen   33 VPGSPAE----RAGLKVGDRILEINGQSVRGM-SHDEVVQLLKSASN-PVTLTVQ   81 (81)
T ss_dssp             CTTSHHH----HHTSSTTEEEEEETTEESTTS-BHHHHHHHHHHSTS-EEEEEEE
T ss_pred             eCCChHH----hcccchhhhhheeCCEeCCCC-CHHHHHHHHHCCCC-cEEEEEC
Confidence            4679999    999999999999999997776 66788888888765 8888874

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>PRK10942 serine endoprotease; Provisional

Probab=98.82  E-value=2.2e-08  Score=78.42  Aligned_cols=61  Identities=15%  Similarity=0.226  Sum_probs=52.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .+++||+    +|||++||+|++|||.+   +.+|+++...+.. ..+..+.++|.|++ +.+.+.++..
T Consensus       319 ~~~SpA~----~AGL~~GDvIl~InG~~---V~s~~dl~~~l~~~~~g~~v~l~v~R~G-~~~~v~v~l~  380 (473)
T PRK10942        319 LPNSSAA----KAGIKAGDVITSLNGKP---ISSFAALRAQVGTMPVGSKLTLGLLRDG-KPVNVNVELQ  380 (473)
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHhcCCCCEEEEEEEECC-eEEEEEEEeC
Confidence            4789999    99999999999999966   6889999888875 45789999999999 8888877654

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.80  E-value=1.9e-08  Score=77.42  Aligned_cols=57  Identities=18%  Similarity=0.305  Sum_probs=48.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLV   72 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~   72 (96)
                      .++|||+    ++||++||.|++|||++   +.+|.++.++++.. .++.+.++|+|++ +...+.
T Consensus       370 ~~~SpA~----~aGL~~GDvI~~Ing~~---V~s~~d~~~~l~~~~~g~~v~l~v~R~g-~~~~~~  427 (428)
T TIGR02037       370 VSGSPAA----RAGLQPGDVILSVNQQP---VSSVAELRKVLDRAKKGGRVALLILRGG-ATIFVT  427 (428)
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEE
Confidence            4689999    99999999999999966   67888999999874 5789999999999 766553

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10942 serine endoprotease; Provisional

Probab=98.75  E-value=3.8e-08  Score=77.15  Aligned_cols=56  Identities=18%  Similarity=0.358  Sum_probs=48.7

Q ss_pred             CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEE
Q psy12583          9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVL   73 (96)
Q Consensus         9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v   73 (96)
                      +++||+    ++||++||+|++|||++   +.+|+++.++++.++ ..+.++|+|++ +.+.+.+
T Consensus       417 ~~S~A~----~aGL~~GDvIv~VNg~~---V~s~~dl~~~l~~~~-~~v~l~V~R~g-~~~~v~~  472 (473)
T PRK10942        417 PGTPAA----QIGLKKGDVIIGANQQP---VKNIAELRKILDSKP-SVLALNIQRGD-SSIYLLM  472 (473)
T ss_pred             CCChHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhCC-CeEEEEEEECC-EEEEEEe
Confidence            689999    99999999999999966   678899999998855 79999999999 7776654

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.62  E-value=1.3e-07  Score=56.46  Aligned_cols=48  Identities=21%  Similarity=0.347  Sum_probs=38.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITV   61 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V   61 (96)
                      .+++||+    ++||++||+|++|||.+... .++.++...++...+ ++.+++
T Consensus        34 ~~~s~a~----~~gl~~GD~I~~ing~~i~~-~~~~~~~~~l~~~~~-~v~l~v   81 (82)
T cd00992          34 EPGGPAE----RGGLRVGDRILEVNGVSVEG-LTHEEAVELLKNSGD-EVTLTV   81 (82)
T ss_pred             CCCChHH----hCCCCCCCEEEEECCEEcCc-cCHHHHHHHHHhCCC-eEEEEE
Confidence            3689999    99999999999999987533 278899999987654 666655

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.60  E-value=1.8e-07  Score=72.27  Aligned_cols=63  Identities=22%  Similarity=0.398  Sum_probs=50.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC-ceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE-GTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g-~~~~~l~v~p   75 (96)
                      .+|+||+    +|||++||+|++|||.+...+ ..+++...++..+|.+++|++.|.+ .+.+.++++-
T Consensus       120 ~~~~PA~----kagi~~GD~I~~IdG~~~~~~-~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~R  183 (406)
T COG0793         120 IDGSPAA----KAGIKPGDVIIKIDGKSVGGV-SLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLTR  183 (406)
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEEccCC-CHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEEE
Confidence            4789999    999999999999999876555 3467788999999999999999973 1445555443

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.60  E-value=2.4e-07  Score=55.22  Aligned_cols=52  Identities=23%  Similarity=0.381  Sum_probs=38.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++||++||+|++|||.++.+... .+....++.. +..+.+++.|++
T Consensus        34 ~~~s~a~----~~gl~~GD~I~~In~~~v~~~~~-~~~~~~~~~~-~~~~~l~i~r~~   85 (85)
T smart00228       34 VPGSPAA----KAGLKVGDVILEVNGTSVEGLTH-LEAVDLLKKA-GGKVTLTVLRGG   85 (85)
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCCCH-HHHHHHHHhC-CCeEEEEEEeCC
Confidence            4678999    99999999999999987654433 3334444443 458999999864

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>TIGR00054 RIP metalloprotease RseP

Probab=98.53  E-value=1.7e-07  Score=72.40  Aligned_cols=55  Identities=11%  Similarity=0.140  Sum_probs=46.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRL   71 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l   71 (96)
                      .++|||+    +|||++||+|++|||.+   +.+|.++...+.... .++.+++.|++ +...+
T Consensus       136 ~~~SpA~----~AGL~~GDvI~~vng~~---v~~~~dl~~~ia~~~-~~v~~~I~r~g-~~~~l  190 (420)
T TIGR00054       136 DKNSIAL----EAGIEPGDEILSVNGNK---IPGFKDVRQQIADIA-GEPMVEILAER-ENWTF  190 (420)
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhhc-ccceEEEEEec-CceEe
Confidence            4689999    99999999999999965   678888888888777 68889999988 65553

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.45  E-value=5.1e-07  Score=73.54  Aligned_cols=64  Identities=16%  Similarity=0.233  Sum_probs=48.5

Q ss_pred             CCCCCcccccccc-CCCCCCEEEEEC--CeecCCcc--cHHHHHHHHHhCCCceEEEEEEeCC--ceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQ-GLVKDDIILEFG--PINSSNFK--SLQDIASTVRAGVNTDIPITVLRNE--GTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~a-GLk~GD~Il~vn--g~~~~~~~--~~~di~~~i~~~~g~~i~l~V~R~g--~~~~~l~v~p   75 (96)
                      .+|+||+    +| ||++||+|++||  |.+..++.  .++++...|+...|.+|.|+|.|++  .+.+.++++.
T Consensus       263 ipGsPA~----ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~R  333 (667)
T PRK11186        263 VAGGPAA----KSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTR  333 (667)
T ss_pred             cCCChHH----HhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEEe
Confidence            4799999    98 999999999998  33222222  4568889999999999999999932  1566666654

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=98.39  E-value=1.6e-06  Score=64.19  Aligned_cols=51  Identities=22%  Similarity=0.383  Sum_probs=40.4

Q ss_pred             ccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEE
Q psy12583         19 YQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVL   73 (96)
Q Consensus        19 ~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v   73 (96)
                      ++|||+||.+++|||.+   ..+-++..+++++- ....++|+|+|+| +..++.+
T Consensus       222 ~~GLq~GDva~sING~d---L~D~~qa~~l~~~L~~~tei~ltVeRdG-q~~~i~i  273 (276)
T PRK09681        222 ASGFKEGDIAIALNQQD---FTDPRAMIALMRQLPSMDSIQLTVLRKG-ARHDISI  273 (276)
T ss_pred             HcCCCCCCEEEEeCCee---CCCHHHHHHHHHHhccCCeEEEEEEECC-EEEEEEE
Confidence            67999999999999976   45556666666653 3479999999999 8877765

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=8.9e-06  Score=61.00  Aligned_cols=62  Identities=21%  Similarity=0.339  Sum_probs=52.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+++||.    ++|+++||.|+++||..   +.+..++...+..+ .|.++.+++.|++ +..++.++...
T Consensus       278 ~~~spa~----~agi~~Gdii~~vng~~---v~~~~~l~~~v~~~~~g~~v~~~~~r~g-~~~~~~v~l~~  340 (347)
T COG0265         278 LPGSPAA----KAGIKAGDIITAVNGKP---VASLSDLVAAVASNRPGDEVALKLLRGG-KERELAVTLGD  340 (347)
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEE---ccCHHHHHHHHhccCCCCEEEEEEEECC-EEEEEEEEecC
Confidence            4689999    99999999999999966   56777777777654 5899999999999 88888887653

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=98.18  E-value=1.5e-05  Score=60.04  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             CCCCCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEe-CCc-eEEEEEEeecCCCCe
Q psy12583          5 LVDSEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLR-NEG-TRQRLVLRPQPFEGQ   81 (96)
Q Consensus         5 ~~~~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R-~g~-~~~~l~v~p~~~~~~   81 (96)
                      |.+.+++|+.    . =|++||.|++|||.+   +.+.+++..++++ .+|.+++++++| ++. +..+.++.+..++++
T Consensus       135 ~~v~~~~~~~----g-kl~~gD~i~avdg~~---f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~~~~g~  206 (342)
T COG3480         135 LSVIDNSPFK----G-KLEAGDTIIAVDGEP---FTSSDELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKNDDNGK  206 (342)
T ss_pred             EEccCCcchh----c-eeccCCeEEeeCCee---cCCHHHHHHHHhccCCCCeEEEEEEeccCCCceEEEEEEeeccCCc
Confidence            4566788988    3 399999999999855   6888888888885 568999999997 551 334444444434667


Q ss_pred             eeEEEEEe
Q psy12583         82 GLVGCYFL   89 (96)
Q Consensus        82 ~~lGi~~~   89 (96)
                      ..||+.+.
T Consensus       207 ~giGIsl~  214 (342)
T COG3480         207 AGIGISLV  214 (342)
T ss_pred             ceeeeEee
Confidence            77888775

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=98.18  E-value=2e-05  Score=49.30  Aligned_cols=57  Identities=16%  Similarity=0.183  Sum_probs=38.0

Q ss_pred             CCCCCccccccccCCC--CCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEE
Q psy12583          8 SEGYPRQDVDVYQGLV--KDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRL   71 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk--~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l   71 (96)
                      ...||..    +.|+.  +||.|++|||+++.+..   ++.+++....|+.+.|+|.+.+.+.+++
T Consensus        28 ~~~sPL~----~pGv~v~~GD~I~aInG~~v~~~~---~~~~lL~~~agk~V~Ltv~~~~~~~R~v   86 (88)
T PF14685_consen   28 NARSPLA----QPGVDVREGDYILAINGQPVTADA---NPYRLLEGKAGKQVLLTVNRKPGGARTV   86 (88)
T ss_dssp             S-B-GGG----GGS----TT-EEEEETTEE-BTTB----HHHHHHTTTTSEEEEEEE-STT-EEEE
T ss_pred             cccCCcc----CCCCCCCCCCEEEEECCEECCCCC---CHHHHhcccCCCEEEEEEecCCCCceEE
Confidence            3447888    77755  99999999998865544   4568899999999999999977334444

>KOG1421|consensus

Probab=97.85  E-value=0.0001  Score=60.48  Aligned_cols=60  Identities=18%  Similarity=0.347  Sum_probs=52.2

Q ss_pred             CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      +++||+    +. |++||.+++||+   .-+.++..+-+++-+.-|+.++|+|+|+| +.++++++.+.
T Consensus       312 ~~gpa~----k~-Le~GDillavN~---t~l~df~~l~~iLDegvgk~l~LtI~Rgg-qelel~vtvqd  371 (955)
T KOG1421|consen  312 PEGPAE----KK-LEPGDILLAVNS---TCLNDFEALEQILDEGVGKNLELTIQRGG-QELELTVTVQD  371 (955)
T ss_pred             cCCchh----hc-cCCCcEEEEEcc---eehHHHHHHHHHHhhccCceEEEEEEeCC-EEEEEEEEecc
Confidence            678999    76 999999999996   33577888888888889999999999999 99999888764

>KOG3834|consensus

Probab=97.74  E-value=5.5e-05  Score=58.92  Aligned_cols=74  Identities=16%  Similarity=0.386  Sum_probs=62.2

Q ss_pred             CCCCCccccccccCCC-CCCEEEEE-CCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCc-eEEEEEEeecC-CCCeee
Q psy12583          8 SEGYPRQDVDVYQGLV-KDDIILEF-GPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEG-TRQRLVLRPQP-FEGQGL   83 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk-~GD~Il~v-ng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~-~~~~l~v~p~~-~~~~~~   83 (96)
                      .+++||+    .|||+ -+|-|+.+ +.+    ....+|+...|..+.++++++-|+.-.. ..++++++|.. |++++.
T Consensus       117 ~p~SPaa----lAgl~~~~DYivG~~~~~----~~~~eDl~~lIeshe~kpLklyVYN~D~d~~ReVti~pn~awGgeg~  188 (462)
T KOG3834|consen  117 EPNSPAA----LAGLRPYTDYIVGIWDAV----MHEEEDLFTLIESHEGKPLKLYVYNHDTDSCREVTITPNSAWGGEGA  188 (462)
T ss_pred             CCCCHHH----hcccccccceEecchhhh----ccchHHHHHHHHhccCCCcceeEeecCCCccceEEeeccccccccce
Confidence            4678999    99999 59999988 542    4678899999999999999999987442 57888999985 999999


Q ss_pred             EEEEEe
Q psy12583         84 VGCYFL   89 (96)
Q Consensus        84 lGi~~~   89 (96)
                      |||.+.
T Consensus       189 lGCgIG  194 (462)
T KOG3834|consen  189 LGCGIG  194 (462)
T ss_pred             eccccc
Confidence            999875

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=97.49  E-value=0.00049  Score=51.66  Aligned_cols=61  Identities=21%  Similarity=0.259  Sum_probs=51.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCce---EEEEEEe-CCceE--------EEEEEee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTD---IPITVLR-NEGTR--------QRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~---i~l~V~R-~g~~~--------~~l~v~p   75 (96)
                      ..++||.    .+||++||+|+++|+.+   +.+|++++..+..+.+.+   +.+.+.| ++ ..        ..+.+.|
T Consensus       137 ~~~s~a~----~a~l~~Gd~iv~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~P  208 (375)
T COG0750         137 APKSAAA----LAGLRPGDRIVAVDGEK---VASWDDVRRLLVAAAGDVFNLLTILVIRLDG-EAHAVAAEIIKSLGLTP  208 (375)
T ss_pred             CCCCHHH----HcCCCCCCEEEeECCEE---ccCHHHHHHHHHhccCCcccceEEEEEeccc-eeeeccccceeeEeeec
Confidence            5678999    99999999999999855   688999999998887766   8999999 76 55        5667777


Q ss_pred             c
Q psy12583         76 Q   76 (96)
Q Consensus        76 ~   76 (96)
                      .
T Consensus       209 ~  209 (375)
T COG0750         209 V  209 (375)
T ss_pred             c
Confidence            4

>KOG3553|consensus

Probab=97.45  E-value=8.8e-05  Score=47.83  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=27.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA   51 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~   51 (96)
                      .+||||+    .|||+.+|+|+++||-+. ++-+-..-..+|++
T Consensus        67 ~eGsPA~----~AGLrihDKIlQvNG~Df-TMvTHd~Avk~i~k  105 (124)
T KOG3553|consen   67 SEGSPAE----IAGLRIHDKILQVNGWDF-TMVTHDQAVKRITK  105 (124)
T ss_pred             ccCChhh----hhcceecceEEEecCcee-EEEEhHHHHHHhhH
Confidence            5799999    999999999999999652 22233333445544

>KOG3209|consensus

Probab=97.36  E-value=0.00028  Score=58.17  Aligned_cols=52  Identities=27%  Similarity=0.367  Sum_probs=41.8

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+||||+    +-| |+.||+|++|||+.+.+.. -.|+..+|+.. |..|+|+|--.+
T Consensus       786 ieGSPAd----RCgkLkVGDrilAVNG~sI~~ls-Hadiv~LIKda-GlsVtLtIip~e  838 (984)
T KOG3209|consen  786 IEGSPAD----RCGKLKVGDRILAVNGQSILNLS-HADIVSLIKDA-GLSVTLTIIPPE  838 (984)
T ss_pred             ccCChhH----hhccccccceEEEecCeeeeccC-chhHHHHHHhc-CceEEEEEcChh
Confidence            5899999    988 9999999999999877664 45777888864 678888876533

>KOG3834|consensus

Probab=97.33  E-value=0.00052  Score=53.59  Aligned_cols=78  Identities=21%  Similarity=0.288  Sum_probs=57.5

Q ss_pred             CCCCCCCccccccccCCCC-CCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCc-eEEEEEEeecC-CCCee
Q psy12583          6 VDSEGYPRQDVDVYQGLVK-DDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEG-TRQRLVLRPQP-FEGQG   82 (96)
Q Consensus         6 ~~~~~~pa~~~~~~aGLk~-GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~-~~~~l~v~p~~-~~~~~   82 (96)
                      .-.++|||.    +|||.+ -|.|++|||....  ++-+.|.+.++.+..+ ++++|..... ..+.++|+|.. |.+. 
T Consensus        21 kVqedSpa~----~aglepffdFIvSI~g~rL~--~dnd~Lk~llk~~sek-Vkltv~n~kt~~~R~v~I~ps~~wggq-   92 (462)
T KOG3834|consen   21 KVQEDSPAH----KAGLEPFFDFIVSINGIRLN--KDNDTLKALLKANSEK-VKLTVYNSKTQEVRIVEIVPSNNWGGQ-   92 (462)
T ss_pred             EeecCChHH----hcCcchhhhhhheeCccccc--CchHHHHHHHHhcccc-eEEEEEecccceeEEEEeccccccccc-
Confidence            446889999    999999 8999999996532  2334566777776655 9998886443 57777888764 7777 


Q ss_pred             eEEEEEecc
Q psy12583         83 LVGCYFLNV   91 (96)
Q Consensus        83 ~lGi~~~~~   91 (96)
                      +||+.+...
T Consensus        93 llGvsvrFc  101 (462)
T KOG3834|consen   93 LLGVSVRFC  101 (462)
T ss_pred             ccceEEEec
Confidence            899887743

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=97.30  E-value=0.00062  Score=54.37  Aligned_cols=55  Identities=25%  Similarity=0.335  Sum_probs=42.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+++||+    +|||.+||+|++|||..    ..+      -+.+.+-.|++.+.|.+ .-+++.+++..
T Consensus       470 ~~~gPA~----~AGl~~Gd~ivai~G~s----~~l------~~~~~~d~i~v~~~~~~-~L~e~~v~~~~  524 (558)
T COG3975         470 FPGGPAY----KAGLSPGDKIVAINGIS----DQL------DRYKVNDKIQVHVFREG-RLREFLVKLGG  524 (558)
T ss_pred             CCCChhH----hccCCCccEEEEEcCcc----ccc------cccccccceEEEEccCC-ceEEeecccCC
Confidence            3579999    99999999999999952    112      12356678999999999 88888777653

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=97.29  E-value=0.00094  Score=48.91  Aligned_cols=51  Identities=20%  Similarity=0.378  Sum_probs=41.6

Q ss_pred             ccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCC-ceEEEEEEeCCceEEEEEE
Q psy12583         19 YQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVN-TDIPITVLRNEGTRQRLVL   73 (96)
Q Consensus        19 ~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g-~~i~l~V~R~g~~~~~l~v   73 (96)
                      +.|||.||.-+++|+.+   ..+-+++..+++.-.+ ..++++|+|+| +...+.+
T Consensus       222 ~sglq~GDIavaiNnld---ltdp~~m~~llq~l~~m~s~qlTv~R~G-~rhdInV  273 (275)
T COG3031         222 KSGLQRGDIAVAINNLD---LTDPEDMFRLLQMLRNMPSLQLTVIRRG-KRHDINV  273 (275)
T ss_pred             hhcCCCcceEEEecCcc---cCCHHHHHHHHHhhhcCcceEEEEEecC-ccceeee
Confidence            67999999999999855   6777888888886554 58999999999 6655544

>KOG3580|consensus

Probab=97.02  E-value=0.0018  Score=52.97  Aligned_cols=61  Identities=21%  Similarity=0.344  Sum_probs=47.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p   75 (96)
                      ..|-+|.    .-+|+.||.|++|||+-..++ ++.|-..+|..+.| ++.+.|+|+. +..-+.+.+
T Consensus       228 ~~gLAar----dgnlqEGDiiLkINGtvteNm-SLtDar~LIEkS~G-KL~lvVlRD~-~qtLiNiP~  288 (1027)
T KOG3580|consen  228 RTGLAAR----DGNLQEGDIILKINGTVTENM-SLTDARKLIEKSRG-KLQLVVLRDS-QQTLINIPS  288 (1027)
T ss_pred             ccchhhc----cCCcccccEEEEECcEeeccc-cchhHHHHHHhccC-ceEEEEEecC-CceeeecCC
Confidence            3455666    678999999999999876665 57788888888877 6899999988 655556554

>KOG1320|consensus

Probab=96.90  E-value=0.0045  Score=49.02  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=48.9

Q ss_pred             CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCCceEEEEEEeec
Q psy12583          9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      +++|+.    .+|+++||+|++|||+.   +.+..++.+.++... ...+.+..+|+. +..++.+.|.
T Consensus       407 p~~~~~----~~~~~~g~~V~~vng~~---V~n~~~l~~~i~~~~~~~~v~vl~~~~~-e~~tl~Il~~  467 (473)
T KOG1320|consen  407 PGSING----GYGLKPGDQVVKVNGKP---VKNLKHLYELIEECSTEDKVAVLDRRSA-EDATLEILPE  467 (473)
T ss_pred             cCCCcc----cccccCCCEEEEECCEE---eechHHHHHHHHhcCcCceEEEEEecCc-cceeEEeccc
Confidence            577888    99999999999999977   567777888888654 247888888888 8888888876

>KOG3580|consensus

Probab=96.84  E-value=0.0011  Score=54.22  Aligned_cols=52  Identities=19%  Similarity=0.307  Sum_probs=38.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+|+||+    +.||+.||+|++||.++..++-.-+.+.-++.--+|..|++.-.+
T Consensus       437 qegspA~----~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtilaQ~  488 (1027)
T KOG3580|consen  437 QEGSPAE----QEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILAQS  488 (1027)
T ss_pred             ccCCchh----hccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehhhh
Confidence            4789999    999999999999999876666544444444555567777765554

>KOG3651|consensus

Probab=95.75  E-value=0.025  Score=43.10  Aligned_cols=52  Identities=17%  Similarity=0.264  Sum_probs=39.3

Q ss_pred             CCCCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          6 VDSEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         6 ~~~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      +-++++||.    +-| ++.||.|++|||..++. ++-.++++.|+...+ ++.+.+-.
T Consensus        36 QvFD~tPAa----~dG~i~~GDEi~avNg~svKG-ktKveVAkmIQ~~~~-eV~IhyNK   88 (429)
T KOG3651|consen   36 QVFDKTPAA----KDGRIRCGDEIVAVNGISVKG-KTKVEVAKMIQVSLN-EVKIHYNK   88 (429)
T ss_pred             EeccCCchh----ccCccccCCeeEEecceeecC-ccHHHHHHHHHHhcc-ceEEEehh
Confidence            457889999    887 99999999999987544 355678888988765 56665533

>KOG3605|consensus

Probab=95.60  E-value=0.048  Score=45.02  Aligned_cols=74  Identities=16%  Similarity=0.248  Sum_probs=48.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCc-eEEEEEEeCCceEEEEEEeecCCCCeeeEE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNT-DIPITVLRNEGTRQRLVLRPQPFEGQGLVG   85 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~-~i~l~V~R~g~~~~~l~v~p~~~~~~~~lG   85 (96)
                      +.+.||+    +.| |-.||+|++|||....... +..-+.+|++.+++ .|+|+|.+=- -..++.+. ++ ..+|-||
T Consensus       681 m~~GpAa----rsgkLnIGDQiiaING~SLVGLP-LstcQs~Ik~~KnQT~VkltiV~cp-PV~~V~I~-RP-d~kyQLG  752 (829)
T KOG3605|consen  681 MHGGPAA----RSGKLNIGDQIMSINGTSLVGLP-LSTCQSIIKGLKNQTAVKLNIVSCP-PVTTVLIR-RP-DLRYQLG  752 (829)
T ss_pred             ccCChhh----hcCCccccceeEeecCceecccc-HHHHHHHHhcccccceEEEEEecCC-CceEEEee-cc-cchhhcc
Confidence            5678999    888 9999999999997654442 44556788876664 6777777633 33333222 22 2355666


Q ss_pred             EEEe
Q psy12583         86 CYFL   89 (96)
Q Consensus        86 i~~~   89 (96)
                      +..+
T Consensus       753 FSVQ  756 (829)
T KOG3605|consen  753 FSVQ  756 (829)
T ss_pred             ceee
Confidence            6554

>PF12812 PDZ_1: PDZ-like domain

Probab=95.24  E-value=0.052  Score=32.99  Aligned_cols=39  Identities=23%  Similarity=0.125  Sum_probs=31.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGV   53 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~   53 (96)
                      ..|+|+.    +.|+..|-.|.+||++   ++.+++++.+++++-+
T Consensus        38 ~~g~~~~----~~~i~~g~iI~~Vn~k---pt~~Ld~f~~vvk~ip   76 (78)
T PF12812_consen   38 SGGSLAF----AGGISKGFIITSVNGK---PTPDLDDFIKVVKKIP   76 (78)
T ss_pred             cCCChhh----hCCCCCCeEEEeECCc---CCcCHHHHHHHHHhCC
Confidence            4578888    5559999999999984   4788888888888654

>KOG3209|consensus

Probab=95.22  E-value=0.042  Score=45.85  Aligned_cols=52  Identities=17%  Similarity=0.254  Sum_probs=36.5

Q ss_pred             CCCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          7 DSEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         7 ~~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      -.++.||.    +-| ++.||+|+.|||..-+.+..-.. .++|++. |..+ +.++|.|
T Consensus       930 lAeDGPA~----rdGrm~VGDqi~eINGesTkgmtH~rA-IelIk~g-g~~v-ll~Lr~g  982 (984)
T KOG3209|consen  930 LAEDGPAI----RDGRMRVGDQITEINGESTKGMTHDRA-IELIKQG-GRRV-LLLLRRG  982 (984)
T ss_pred             eccCCCcc----ccCceeecceEEEecCcccCCCcHHHH-HHHHHhC-CeEE-EEEeccC
Confidence            36788999    888 99999999999987666654433 4677764 4444 4445544

>KOG3532|consensus

Probab=95.11  E-value=0.047  Score=45.49  Aligned_cols=48  Identities=10%  Similarity=0.236  Sum_probs=37.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      -+|+||.    ++.+++||.+++|||++   +.+.+++..+++.-.+ .+.+.+.|
T Consensus       406 ~~ns~a~----k~~~~~gdvlvai~~~p---i~s~~q~~~~~~s~~~-~~~~l~~~  453 (1051)
T KOG3532|consen  406 EDNSLAD----KAAFKPGDVLVAINNVP---IRSERQATRFLQSTTG-DLTVLVER  453 (1051)
T ss_pred             cCCChhh----HhcCCCcceEEEecCcc---chhHHHHHHHHHhccc-ceEEEEee
Confidence            3689999    99999999999999955   6777888899987766 34444444

>KOG3550|consensus

Probab=94.35  E-value=0.12  Score=35.82  Aligned_cols=41  Identities=17%  Similarity=0.291  Sum_probs=29.0

Q ss_pred             ccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEE
Q psy12583         19 YQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITV   61 (96)
Q Consensus        19 ~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V   61 (96)
                      ..||+.||++++|||+++..- .-+.-.+.++...| .+++.|
T Consensus       131 hgglkrgdqllsvngvsvege-~hekavellkaa~g-svklvv  171 (207)
T KOG3550|consen  131 HGGLKRGDQLLSVNGVSVEGE-HHEKAVELLKAAVG-SVKLVV  171 (207)
T ss_pred             cCcccccceeEeecceeecch-hhHHHHHHHHHhcC-cEEEEE
Confidence            457999999999999875442 34455677777666 555554

>KOG1421|consensus

Probab=94.32  E-value=0.063  Score=44.76  Aligned_cols=44  Identities=23%  Similarity=0.280  Sum_probs=32.7

Q ss_pred             CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583         22 LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP   75 (96)
Q Consensus        22 Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p   75 (96)
                      |-.||.|+++||+-+   ....|+.++.      .+.++|+|+| .++++++..
T Consensus       786 l~~gdiilsvngk~i---tr~~dl~d~~------eid~~ilrdg-~~~~ikipt  829 (955)
T KOG1421|consen  786 LGVGDIILSVNGKMI---TRLSDLHDFE------EIDAVILRDG-IEMEIKIPT  829 (955)
T ss_pred             cccccEEEEecCeEE---eeehhhhhhh------hhheeeeecC-cEEEEEecc
Confidence            788999999999664   4444444321      7789999999 888887644

>KOG3542|consensus

Probab=93.52  E-value=0.04  Score=46.04  Aligned_cols=49  Identities=27%  Similarity=0.325  Sum_probs=33.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+|+.|.    .+||+.||+|++|||++..++. +..-.++++++  ..+.++|.-
T Consensus       570 ~pgskAa----~~GlKRgDqilEVNgQnfenis-~~KA~eiLrnn--thLtltvKt  618 (1283)
T KOG3542|consen  570 FPGSKAA----REGLKRGDQILEVNGQNFENIS-AKKAEEILRNN--THLTLTVKT  618 (1283)
T ss_pred             cCCchHH----Hhhhhhhhhhhhccccchhhhh-HHHHHHHhcCC--ceEEEEEec
Confidence            4678788    8999999999999997654442 22333555543  456666654

>KOG3552|consensus

Probab=93.45  E-value=0.13  Score=44.11  Aligned_cols=50  Identities=24%  Similarity=0.267  Sum_probs=38.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      ++|.|+.     .-|++||+|++|||.+++. ..|+-+..+++.-+ ..|.++|-+.
T Consensus        83 T~GGps~-----GKL~PGDQIl~vN~Epv~d-aprervIdlvRace-~sv~ltV~qP  132 (1298)
T KOG3552|consen   83 TEGGPSI-----GKLQPGDQILAVNGEPVKD-APRERVIDLVRACE-SSVNLTVCQP  132 (1298)
T ss_pred             cCCCCcc-----ccccCCCeEEEecCccccc-ccHHHHHHHHHHHh-hhcceEEecc
Confidence            5788887     3499999999999976543 46888888888754 5777888773

>KOG0606|consensus

Probab=93.01  E-value=0.17  Score=43.91  Aligned_cols=42  Identities=19%  Similarity=0.221  Sum_probs=32.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVN   54 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g   54 (96)
                      .+|+||.    .|||++||.|+.+||..+... ...+|.+++-++.+
T Consensus       666 ~egsPA~----~agls~~DlIthvnge~v~gl-~H~ev~~Lll~~gn  707 (1205)
T KOG0606|consen  666 EEGSPAF----EAGLSAGDLITHVNGEPVHGL-VHTEVMELLLKSGN  707 (1205)
T ss_pred             cCCCCcc----ccCCCccceeEeccCcccchh-hHHHHHHHHHhcCC
Confidence            4789999    999999999999999765544 44566666665443

>KOG3551|consensus

Probab=92.49  E-value=0.23  Score=38.96  Aligned_cols=51  Identities=14%  Similarity=0.292  Sum_probs=33.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEE--EEEEeC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIP--ITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~--l~V~R~   64 (96)
                      ++|..|+    +.| |..||.|++|||.+... .+-++-.+.++. .|+.+.  +++.|+
T Consensus       118 FkGlAAD----Qt~aL~~gDaIlSVNG~dL~~-AtHdeAVqaLKr-aGkeV~levKy~RE  171 (506)
T KOG3551|consen  118 FKGLAAD----QTGALFLGDAILSVNGEDLRD-ATHDEAVQALKR-AGKEVLLEVKYMRE  171 (506)
T ss_pred             ccccccc----cccceeeccEEEEecchhhhh-cchHHHHHHHHh-hCceeeeeeeeehh
Confidence            4677777    776 99999999999966432 334444556664 466654  555553

>KOG0609|consensus

Probab=90.86  E-value=0.44  Score=38.47  Aligned_cols=44  Identities=30%  Similarity=0.416  Sum_probs=33.6

Q ss_pred             ccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583         19 YQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus        19 ~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      +.| |..||.|++|||+.+.+ ....++.++++...| .+++++.=.
T Consensus       161 r~glL~~GD~i~EvNGi~v~~-~~~~e~q~~l~~~~G-~itfkiiP~  205 (542)
T KOG0609|consen  161 RQGLLHVGDEILEVNGISVAN-KSPEELQELLRNSRG-SITFKIIPS  205 (542)
T ss_pred             hccceeeccchheecCeeccc-CCHHHHHHHHHhCCC-cEEEEEccc
Confidence            566 88999999999987554 467888899988775 666666543

>KOG3606|consensus

Probab=90.18  E-value=0.73  Score=34.77  Aligned_cols=50  Identities=26%  Similarity=0.359  Sum_probs=36.7

Q ss_pred             CCCCCccccccccCCCC-CCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVK-DDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~-GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+|.-|+    .-||.+ +|.|++|||+.+.. ++++++..++-.+. ..+-++|+-
T Consensus       202 VpGGLAe----STGLLaVnDEVlEVNGIEVaG-KTLDQVTDMMvANs-hNLIiTVkP  252 (358)
T KOG3606|consen  202 VPGGLAE----STGLLAVNDEVLEVNGIEVAG-KTLDQVTDMMVANS-HNLIITVKP  252 (358)
T ss_pred             cCCcccc----ccceeeecceeEEEcCEEecc-ccHHHHHHHHhhcc-cceEEEecc
Confidence            3677788    888655 99999999987533 67888888877654 455566654

>KOG3571|consensus

Probab=89.74  E-value=0.73  Score=37.31  Aligned_cols=40  Identities=23%  Similarity=0.363  Sum_probs=28.6

Q ss_pred             CCCCCEEEEECCeecCCcccHHHHHHHHHh---CCCceEEEEEEe
Q psy12583         22 LVKDDIILEFGPINSSNFKSLQDIASTVRA---GVNTDIPITVLR   63 (96)
Q Consensus        22 Lk~GD~Il~vng~~~~~~~~~~di~~~i~~---~~g~~i~l~V~R   63 (96)
                      |.+||.|++||.++..++.+-+.+ ..+++   .++ |++++|-.
T Consensus       296 Ie~GDMiLQVNevsFENmSNd~AV-rvLREaV~~~g-Pi~ltvAk  338 (626)
T KOG3571|consen  296 IEPGDMILQVNEVSFENMSNDQAV-RVLREAVSRPG-PIKLTVAK  338 (626)
T ss_pred             cCccceEEEeeecchhhcCchHHH-HHHHHHhccCC-CeEEEEee
Confidence            889999999999887777665443 34443   333 78888766

>KOG1892|consensus

Probab=89.43  E-value=0.64  Score=40.50  Aligned_cols=52  Identities=15%  Similarity=0.167  Sum_probs=38.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|.||+    .-| |++||++++|||+....+. -++-.+++-. .|..|.|+|...|
T Consensus       968 V~GgaAd----~DGRL~aGDQLLsVdG~SLiGis-QErAA~lmtr-tg~vV~leVaKqg 1020 (1629)
T KOG1892|consen  968 VEGGAAD----HDGRLEAGDQLLSVDGHSLIGIS-QERAARLMTR-TGNVVHLEVAKQG 1020 (1629)
T ss_pred             ccCCccc----cccccccCceeeeecCccccccc-HHHHHHHHhc-cCCeEEEehhhhh
Confidence            4788888    667 9999999999998766553 3344455554 4668888887755

>KOG2921|consensus

Probab=88.89  E-value=0.41  Score=37.70  Aligned_cols=28  Identities=18%  Similarity=0.230  Sum_probs=23.0

Q ss_pred             CCCCCCEEEEECCeecCCcccHHHHHHH
Q psy12583         21 GLVKDDIILEFGPINSSNFKSLQDIAST   48 (96)
Q Consensus        21 GLk~GD~Il~vng~~~~~~~~~~di~~~   48 (96)
                      ||.+||+|+++||-++.+..+|-+..+.
T Consensus       238 GL~vgdvitsldgcpV~~v~dW~ecl~t  265 (484)
T KOG2921|consen  238 GLSVGDVITSLDGCPVHKVSDWLECLAT  265 (484)
T ss_pred             cCCccceEEecCCcccCCHHHHHHHHHh
Confidence            8999999999999888777777654443

>KOG3549|consensus

Probab=83.95  E-value=1.8  Score=33.80  Aligned_cols=43  Identities=21%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             ccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583         19 YQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus        19 ~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      ..| |-.||-|++|||..+.+- .-+++..++++ .|..++++|+.
T Consensus        95 ~tG~LFvGDAilqvNGi~v~~c-~HeevV~iLRN-AGdeVtlTV~~  138 (505)
T KOG3549|consen   95 ITGQLFVGDAILQVNGIYVTAC-PHEEVVNILRN-AGDEVTLTVKH  138 (505)
T ss_pred             hcCceEeeeeeEEeccEEeecC-ChHHHHHHHHh-cCCEEEEEeHh
Confidence            334 778999999999875443 45678888886 46677777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	99.65
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	99.59
2kl1_A	94	YLBL protein; structure genomics, structural genom	99.55
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	99.54
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.43
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	99.41
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	99.38
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	99.37
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	99.35
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	99.35
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.33
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.31
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	99.3
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.29
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	99.27
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.26
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.26
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.25
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.24
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.24
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.23
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.23
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.23
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.22
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.22
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.21
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.2
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.2
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.19
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.19
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.18
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.18
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.17
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.17
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.17
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.17
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.17
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.17
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.16
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.16
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.14
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.14
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.13
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.13
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.12
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.11
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.11
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.11
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.11
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.11
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.11
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.11
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.11
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.11
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.11
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.11
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.11
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.11
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.11
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.1
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.1
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.1
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.1
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.1
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.09
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.09
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.09
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.09
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.09
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.09
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.09
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.08
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.08
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.08
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.08
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.07
2ego_A	96	General receptor for phosphoinositides 1- associat	99.07
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.07
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.07
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.07
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.07
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.07
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.06
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.06
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.06
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.06
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.06
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.05
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.05
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.05
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.05
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.05
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.05
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.04
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.04
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.04
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.04
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.04
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.04
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.03
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.03
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.03
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.03
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.03
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.03
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.02
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.02
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.02
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.02
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.01
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.01
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.01
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.01
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.0
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.0
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.0
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.0
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.0
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	98.99
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.99
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.99
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.99
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.99
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.98
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	98.98
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.98
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.98
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.97
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.96
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.96
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.95
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.95
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.94
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.94
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.94
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.94
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.94
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.94
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	98.94
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.94
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.94
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.93
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.93
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.93
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.93
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.92
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.92
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.92
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.92
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.92
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.92
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.91
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.91
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.91
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.91
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.91
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.91
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.9
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.89
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.89
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.89
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.89
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.89
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.89
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.88
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.88
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.88
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.88
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.87
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.87
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.87
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.87
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.86
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	98.85
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.85
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.84
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.84
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.83
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.83
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.81
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.77
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.76
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.76
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.75
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.71
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.68
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.68
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.67
3k50_A	403	Putative S41 protease; structural genomics, joint	98.61
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.6
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.6
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	98.02
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.57
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.56
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	98.4
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.38
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.23
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.15
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	98.1
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	97.89
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.18

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=99.65  E-value=1.9e-15  Score=94.37  Aligned_cols=80  Identities=16%  Similarity=0.220  Sum_probs=67.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEeecC--CCCeeeE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLRPQP--FEGQGLV   84 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~p~~--~~~~~~l   84 (96)
                      .++|||+    + ||++||+|++|||.+   +.+|.++..+++.. ++.++.++|.|++ +..++++++..  ..+++.|
T Consensus        15 ~~~spA~----~-GL~~GD~I~~Ing~~---v~~~~dl~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~~~~~~~~~~~~i   85 (100)
T 3i18_A           15 KDDVPAA----D-VLHAGDLITEIDGNA---FKSSQEFIDYIHSKKVGDTVKINYKHGD-KNEQADIKLTAIDKKGTPGI   85 (100)
T ss_dssp             CTTSGGG----G-TCCTTCEEEEETTBC---CSSHHHHHHHHHTSCTTCEEEEEEEETT-EEEEEEEECEECSTTCCEEC
T ss_pred             CCCCchH----H-CCCCCCEEEEECCEE---CCCHHHHHHHHHhCCCCCEEEEEEEECC-EEEEEEEEEecCCCCCCcEE
Confidence            4789999    7 999999999999955   68899999999874 6889999999999 98888888864  3468899


Q ss_pred             EEEEecceeecC
Q psy12583         85 GCYFLNVENVER   96 (96)
Q Consensus        85 Gi~~~~~~~~~~   96 (96)
                      |+.+.+...-|+
T Consensus        86 Gi~~~~~~~~~~   97 (100)
T 3i18_A           86 GITLVDDLEHHH   97 (100)
T ss_dssp             SEEEGGGC-CCC
T ss_pred             eEEEecCCcccc
Confidence            999988776664

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=99.59  E-value=1.2e-15  Score=94.22  Aligned_cols=73  Identities=15%  Similarity=0.251  Sum_probs=62.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEeecC---CCCeee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLRPQP---FEGQGL   83 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~p~~---~~~~~~   83 (96)
                      .++|||+    + ||++||+|++|||.+   +.+|.++..+++.. +|.+++|+|.|++ +.+++++++..   ..++..
T Consensus         9 ~~~spA~----~-GL~~GD~I~~InG~~---v~~~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~~~~~~~~~gr~~   79 (91)
T 2kjp_A            9 VENMPAK----G-KIEVGDKIISADGKN---YQSAEKLIDYISSKKAGDKVTLKIEREE-KEKRVTLTLKQFPDEPDRAG   79 (91)
T ss_dssp             CCSSCCS----S-CCCSSCEEEEETTBC---CSSHHHHHHHHSSCCSSCEECEEEESSS-CEECCCEECCCCTTCTTSCS
T ss_pred             CCCChHH----H-cCCCCCEEEEECCEE---CCCHHHHHHHHHcCCCCCEEEEEEEECC-EEEEEEEEEeccCCCCCcce
Confidence            5789999    8 999999999999955   67889999999887 6899999999999 99999988874   245777


Q ss_pred             EEEEEe
Q psy12583         84 VGCYFL   89 (96)
Q Consensus        84 lGi~~~   89 (96)
                      ||+.+.
T Consensus        80 ~~~~~~   85 (91)
T 2kjp_A           80 IGVSLE   85 (91)
T ss_dssp             CCSCCC
T ss_pred             eEEeee
Confidence            887764

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=99.55  E-value=2e-14  Score=88.86  Aligned_cols=73  Identities=19%  Similarity=0.205  Sum_probs=60.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEeecC---CCCeee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLRPQP---FEGQGL   83 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~p~~---~~~~~~   83 (96)
                      .++|||+    + ||++||+|++|||.+   +.+|.++..+++.. +|.++.++|.|++ +.+++++++..   ..++.+
T Consensus        13 ~~~spA~----~-GL~~GD~Il~InG~~---v~~~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~~~~~~~~~~~~~   83 (94)
T 2kl1_A           13 LPNMPAA----G-RLEAGDRIAAIDGQP---INTSEQIVSYVREKQAGDRVRVTFIRDR-KQHEAELVLKPFPHHPNQIG   83 (94)
T ss_dssp             CTTSTTB----T-TBCTTCEEEEETTBC---CCCHHHHHHHHHHSCTTCCEEEEEEETT-EEEEEEECCCBCSSCTTCBC
T ss_pred             CCCChHH----h-CCCCCCEEEEECCEE---CCCHHHHHHHHHhCCCCCEEEEEEEECC-EEEEEEEEEeeCCCCCCCcE
Confidence            4789999    8 999999999999955   57889999999876 6899999999999 99999998874   245677


Q ss_pred             EEEEEe
Q psy12583         84 VGCYFL   89 (96)
Q Consensus        84 lGi~~~   89 (96)
                      +|+.+.
T Consensus        84 ~~~~~~   89 (94)
T 2kl1_A           84 LGVTLE   89 (94)
T ss_dssp             CSCC--
T ss_pred             EEEEee
Confidence            887764

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=99.54  E-value=2.3e-14  Score=87.23  Aligned_cols=74  Identities=19%  Similarity=0.223  Sum_probs=61.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC--CCC--eee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP--FEG--QGL   83 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~--~~~--~~~   83 (96)
                      .++|||+    +|||++||+|++|||.+   +.+|.++..+++.+.+.++.++|.|++ +.+++++++..  +.+  .++
T Consensus        12 ~~~spA~----~aGl~~GD~I~~ing~~---v~~~~~~~~~l~~~~g~~v~l~v~R~g-~~~~~~v~~~~~~~~~~~~g~   83 (91)
T 2zpm_A           12 QPNSAAS----XAGLQAGDRIVXVDGQP---LTQWVTFVMLVRDNPGXSLALEIERQG-SPLSLTLIPESXPGNGXAIGF   83 (91)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEE---CCCHHHHHHHHHHCTTCCEEEEEEETT-EEEEEEECCEEECCSSSCEEE
T ss_pred             CCCChHH----hcCCCCCCEEEEECCeE---cCCHHHHHHHHhcCCCCeEEEEEEECC-eEEEEEEEEeeecCCCceEEE
Confidence            4789999    99999999999999966   578899999999888889999999999 99889888753  222  356


Q ss_pred             EEEEEe
Q psy12583         84 VGCYFL   89 (96)
Q Consensus        84 lGi~~~   89 (96)
                      +|+.+.
T Consensus        84 ~g~~~~   89 (91)
T 2zpm_A           84 VGIEPX   89 (91)
T ss_dssp             CCEECC
T ss_pred             EEEEEe
Confidence            776543

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.43  E-value=1.3e-13  Score=95.77  Aligned_cols=74  Identities=18%  Similarity=0.391  Sum_probs=63.4

Q ss_pred             CCCCCccccccccCCCC-CCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCc-eEEEEEEeecC-CCCeeeE
Q psy12583          8 SEGYPRQDVDVYQGLVK-DDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEG-TRQRLVLRPQP-FEGQGLV   84 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~-GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~-~~~~l~v~p~~-~~~~~~l   84 (96)
                      .++|||+    +|||++ ||.|++|||.    +.+|+++.++++.++++++.|+|.|++. +.++++++|.. |.+.++|
T Consensus       120 ~~~spA~----~aGl~~~GD~I~~ing~----v~~~~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p~~~~~g~g~l  191 (209)
T 3rle_A          120 ESNSPAA----LAGLRPHSDYIIGADTV----MNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGEGSL  191 (209)
T ss_dssp             CTTSHHH----HHTCCTTTEEEEEESSC----CCSSSCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECCCTTSSSSSSS
T ss_pred             CCCChHH----HCCCCCCCCEEEECCCE----eCCHHHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEecCCCCCceee
Confidence            4789999    999999 9999999983    5677788889998888999999999752 56888999975 6778999


Q ss_pred             EEEEe
Q psy12583         85 GCYFL   89 (96)
Q Consensus        85 Gi~~~   89 (96)
                      ||.+.
T Consensus       192 G~~~~  196 (209)
T 3rle_A          192 GCGIG  196 (209)
T ss_dssp             CEEEE
T ss_pred             eEEec
Confidence            99986

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=99.41  E-value=5e-13  Score=81.23  Aligned_cols=58  Identities=12%  Similarity=0.227  Sum_probs=48.5

Q ss_pred             CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEe
Q psy12583          9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLR   74 (96)
Q Consensus         9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~   74 (96)
                      ++|||+    +|||++||.|++|||.+   +.+|.++.++++.. ++.++.++|+|+| +.++++++
T Consensus        28 ~~s~A~----~aGl~~GD~I~~ing~~---v~~~~d~~~~~~~~~~g~~v~l~v~R~g-~~~~~~v~   86 (87)
T 2i6v_A           28 DPVLFE----SIGLQDGDMAVALNGLD---LTDPNVMNTLFQSMNEMTEMSLTVERDG-QQHDVYIQ   86 (87)
T ss_dssp             CHHHHH----HTTCCTTCEEEEETTEE---TTCHHHHHHHHHTGGGCSEEEEEEEETT-EEEEEEEE
T ss_pred             CCCHHH----HCCCCCCCEEEEECCEE---CCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEE
Confidence            445669    99999999999999966   57889998888764 5789999999999 88777654

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=99.38  E-value=1.6e-12  Score=80.44  Aligned_cols=63  Identities=10%  Similarity=0.045  Sum_probs=51.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCC-ceEEEEEEeCCc-eEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVN-TDIPITVLRNEG-TRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g-~~i~l~V~R~g~-~~~~l~v~p~~   77 (96)
                      .++|||+    +|||++||+|++|||.+   +.+|+++..++..+.+ +++.++|.|++. ...++++....
T Consensus        10 ~~~spA~----~aGl~~GD~I~~ing~~---v~~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~   74 (95)
T 3id1_A           10 AANSIAA----EAQIAPGTELKAVDGIE---TPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRH   74 (95)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEE---CSSHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTT
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEccc
Confidence            5789999    99999999999999966   6789999999987655 799999999872 24555655544

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=99.37  E-value=3.7e-12  Score=83.23  Aligned_cols=61  Identities=21%  Similarity=0.278  Sum_probs=53.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+||||+     |||++||+|++|||.+   +.+|.++..+++.. +|.+++++|.|+| +.+++++++..
T Consensus        65 ~~~spA~-----aGL~~GD~I~~inG~~---v~~~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~~~~  126 (134)
T 2l97_A           65 QSNMPAN-----GHLEKYDVITKVDDKE---IASSTDLQSALYNHSIGDTIKITYYRNG-KEETTSIKLNK  126 (134)
T ss_dssp             STTSGGG-----TTSCSSCEEEEETTEE---CCCHHHHHHHHHHSSTTCEEEEEEEETT-EEEEEEEECCC
T ss_pred             CCCCchH-----HCCCCCCEEEEECCEE---cCCHHHHHHHHHhCCCCCEEEEEEEECC-EEEEEEEEEcc
Confidence            4788998     8999999999999966   57888999999876 6899999999999 99999998864

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=99.35  E-value=1.9e-12  Score=81.15  Aligned_cols=58  Identities=12%  Similarity=0.249  Sum_probs=47.3

Q ss_pred             CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEe
Q psy12583          9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLR   74 (96)
Q Consensus         9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~   74 (96)
                      +++||+    +|||++||+|++|||.+   +.+|.++..+++. .++.++.++|+|+| +.+++++.
T Consensus        46 pas~A~----~aGl~~GDvI~~ing~~---v~~~~d~~~~~~~~~~g~~v~l~v~R~g-~~~~~~v~  104 (105)
T 2i4s_A           46 DPVLFE----SIGLQDGDMAVALNGLD---LTDPNVMNTLFQSMNEMTEMSLTVERDG-QQHDVYIQ  104 (105)
T ss_dssp             CTHHHH----HHTCCTTCEEEEETTEE---TTSTTHHHHHHHHHTTCSEEEEEEEETT-EEEEEEEE
T ss_pred             CCCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHhcCCCCeEEEEEEECC-EEEEEEEe
Confidence            344559    99999999999999976   5677778888875 56789999999999 88777654

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=99.35  E-value=4e-12  Score=82.60  Aligned_cols=72  Identities=19%  Similarity=0.209  Sum_probs=57.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecC-CCCeeeEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQP-FEGQGLVG   85 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~-~~~~~~lG   85 (96)
                      .+++||+    +| |++||+|++|||.+   +.+|.++..+++. .++.++.++| |++ + +.+++.+.. +.+.+.||
T Consensus        33 ~~~spA~----~a-L~~GD~Il~InG~~---v~~~~dl~~~l~~~~~g~~v~l~V-R~g-~-~~v~l~~~~~~~~~~~lG  101 (125)
T 2hga_A           33 VPGSPAS----KV-LTPGLVIESINGMP---TSNLTTYSAALKTISVGEVINITT-DQG-T-FHLKTGRNPNNSSRAYMG  101 (125)
T ss_dssp             CSSSGGG----GT-SCTTCEEEEETTEE---CSSHHHHHHHHTTCCTTCEEEEEE-TTE-E-EEEECCBCSSSCCSCBCC
T ss_pred             CCCChHH----Hh-cCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEE-ECC-E-EEEEEeccCCCCCceEEE
Confidence            4789999    99 99999999999966   5788999999885 5688999999 998 7 666555432 23456899


Q ss_pred             EEEec
Q psy12583         86 CYFLN   90 (96)
Q Consensus        86 i~~~~   90 (96)
                      +.+.+
T Consensus       102 i~~~~  106 (125)
T 2hga_A          102 IRTSN  106 (125)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            88764

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.33  E-value=5e-12  Score=79.51  Aligned_cols=64  Identities=19%  Similarity=0.171  Sum_probs=54.6

Q ss_pred             CCCCCccccccccCC-CCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGL-VKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGL-k~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+++||+    ++|| ++||+|++|||.++.+. +++++..+++..++.++.++|.|++ +...+++.+..
T Consensus        34 ~~~spA~----~aGll~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~g~~v~l~v~R~g-~~~~~~~~~~~   98 (112)
T 1qau_A           34 IRGGAAE----QSGLIQAGDIILAVNDRPLVDL-SYDSALEVLRGIASETHVVLILRGP-EGFTTHLETTF   98 (112)
T ss_dssp             CTTSHHH----HHTCCCTTCEEEEETTEECTTS-CHHHHHHHHHHSCSSSEEEEEEECC-TTSEEEEEEEE
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCcEEEEEEeCC-cccceEeeeec
Confidence            4789999    9998 99999999999875432 3899999999888899999999999 87777777653

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.31  E-value=3.1e-12  Score=77.62  Aligned_cols=61  Identities=20%  Similarity=0.299  Sum_probs=42.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p   75 (96)
                      .+++||+    ++| |++||+|++|||.++... +|.++..+++... .++.++|.|++ +...+++.|
T Consensus        31 ~~~s~A~----~aG~l~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~-~~v~l~v~r~g-~~~~~~v~p   92 (92)
T 3cyy_A           31 SQDSLAA----RDGNIQEGDVVLKINGTVTENM-SLTDAKTLIERSK-GKLKMVVQRDE-RATLLNVPD   92 (92)
T ss_dssp             CTTCHHH----HSCCCCTTCEEEEETTEECTTC-CHHHHHHHHHTTT-TEEEEEEEC------------
T ss_pred             CCCChHH----hcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCC-CcEEEEEEeCC-ceeeeeCCC
Confidence            4789999    999 999999999999774322 7889999998755 49999999999 887777654

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=99.30  E-value=6.8e-12  Score=79.11  Aligned_cols=60  Identities=23%  Similarity=0.428  Sum_probs=52.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .++|||+    +|||++||.|++|||.+   +.++.++..+++.  +.++.++|.|++ +.+++++++..
T Consensus        43 ~~~spA~----~aGl~~GD~I~~ing~~---v~~~~~~~~~l~~--~~~v~l~v~R~g-~~~~~~v~~~~  102 (113)
T 2pzd_A           43 ILGSPAH----RAGLRPGDVILAIGEQM---VQNAEDVYEAVRT--QSQLAVQIRRGR-ETLTLYVTPEV  102 (113)
T ss_dssp             BTTSHHH----HHTCCTTCEEEEETTEE---CCSHHHHHHHHHH--CSSEEEEEEETT-EEEEEEECCEE
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHhC--CCeEEEEEEECC-EEEEEEEEEee
Confidence            4789999    99999999999999976   4678889888887  578999999999 99999988864

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.29  E-value=1.6e-12  Score=80.96  Aligned_cols=63  Identities=11%  Similarity=0.179  Sum_probs=53.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+++||+    +|||++||+|++|||.++.++ .+.++..+++.. +.++.|+|+|++ +..+++++|..
T Consensus        37 ~~~spA~----~aGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~-g~~v~l~v~R~g-~~~~~~v~p~~   99 (103)
T 1wf7_A           37 KDGGKAS----QAHVRIGDVVLSIDGISAQGM-THLEAQNKIKAC-TGSLNMTLQRAS-AAAKSEPVSSG   99 (103)
T ss_dssp             CTTCHHH----HTTCCTTCBEEEETTEECSSC-CHHHHHHHHHHC-SSEEEEEECCCS-CCCCCCCCCCC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEeCC-CcCCCCCCCCC
Confidence            4789999    999999999999999887655 457777777765 678999999999 88888887753

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=99.27  E-value=7.1e-12  Score=79.01  Aligned_cols=60  Identities=17%  Similarity=0.285  Sum_probs=51.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .++|||+    ++||++||+|++|||++   +.+|.++..+++  .+.++.++|.|++ +.+++++++..
T Consensus        43 ~~~spA~----~aGl~~GD~I~~ing~~---v~~~~~~~~~l~--~g~~v~l~v~R~g-~~~~~~v~~~~  102 (112)
T 2p3w_A           43 APNSPSQ----RGGIQDGDIIVKVNGRP---LVDSSELQEAVL--TESPLLLEVRRGN-DDLLFSIAPEV  102 (112)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEE---CCSHHHHHHHHH--HCSSEEEEEEETT-EEEEEEECCEE
T ss_pred             CCCChHH----HCCCCCCCEEEEECCEE---CCCHHHHHHHHh--CCCeEEEEEEECC-EEEEEEEEEee
Confidence            4789999    99999999999999976   567888888885  3678999999999 99899888764

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.26  E-value=8.5e-12  Score=77.82  Aligned_cols=64  Identities=11%  Similarity=0.135  Sum_probs=45.8

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPF   78 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~~   78 (96)
                      .+++||+    ++| |++||+|++|||.++.+. ++.++...++.. +..+.|+|.|++ ....+.++|..|
T Consensus        41 ~~~spA~----~aG~L~~GD~I~~vng~~v~~~-~~~~~~~~~~~~-~~~v~l~v~R~~-~~~~~~~~p~~w  105 (105)
T 2awx_A           41 IEGGAAH----KDGKLQIGDKLLAVNSVSLEEV-THEEAVTALKNT-SDFVYLKVAKPT-SMYISRHHHHHH  105 (105)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTC-BHHHHHHHHHSC-CSEEEEEEECCC-C-----------
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEcCC-CCCCccccccCC
Confidence            4789999    999 999999999999886554 577887888765 689999999999 888888888654

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.26  E-value=1.8e-11  Score=89.44  Aligned_cols=62  Identities=21%  Similarity=0.282  Sum_probs=55.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .++|||+    +|||++||+|++|||++   +.+|.++..+++. .+|.+++|+|+|++ +.+++++++..
T Consensus       252 ~~~spA~----~aGL~~GD~I~~ing~~---v~~~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~~~~  314 (318)
T 1te0_A          252 SPDGPAA----NAGIQVNDLIISVDNKP---AISALETMDQVAEIRPGSVIPVVVMRDD-KQLTLQVTIQE  314 (318)
T ss_dssp             CTTSTTT----TTCCCTTCCEEEETTEE---CCCHHHHHHHHHTSCTTCEEEEEEESSS-CEEEEEEECEE
T ss_pred             CCCChHH----HCCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEEcc
Confidence            4789999    99999999999999966   5778899999987 67899999999999 99999888763

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.25  E-value=1e-11  Score=81.68  Aligned_cols=62  Identities=16%  Similarity=0.202  Sum_probs=47.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p   75 (96)
                      .+|+||+    +|||++||+|++|||.++.+. ++.++..+++..+|.++.|+|.|++ +...+.+..
T Consensus        72 ~~~spA~----~aGL~~GD~I~~vng~~v~~~-~~~~~~~~l~~~~g~~v~l~v~R~g-~~~~v~~~~  133 (139)
T 2vz5_A           72 SEGGPAE----IAGLQIGDKIMQVNGWDMTMV-THDQARKRLTKRSEEVVRLLVTRQS-LQKAVQQSM  133 (139)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTC-CHHHHHHHHCCTTCSEEEEEEEECC--------CC
T ss_pred             CCCCHHH----HCCCCCCCEEEEECCEEcCCC-CHHHHHHHHHhCCCCEEEEEEEECC-EEEEEEEee
Confidence            4789999    999999999999999875432 6889999999877899999999999 776665543

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.24  E-value=1.2e-11  Score=75.31  Aligned_cols=54  Identities=17%  Similarity=0.417  Sum_probs=44.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTR   68 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~   68 (96)
                      .+++||+    +|||++||+|++|||.++... ++.++..+++.. +.++.|+|.|++ ..
T Consensus        35 ~~~spA~----~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~~-g~~v~l~v~r~~-~~   88 (91)
T 2vsp_A           35 QKGGPAD----LAGLEDEDVIIEVNGVNVLDE-PYEKVVDRIQSS-GKNVTLLVCGKK-AQ   88 (91)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTS-CHHHHHHHHTTS-CSEEEEEEEC-----
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCEEEEEEEeCC-cc
Confidence            4789999    999999999999999875322 789999999887 889999999987 43

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.24  E-value=3.6e-12  Score=77.50  Aligned_cols=55  Identities=20%  Similarity=0.332  Sum_probs=45.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQ   69 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~   69 (96)
                      .++|||+    +|||++||+|++|||.++.++. ..++..+++. ++.++.++|.|++ +..
T Consensus        35 ~~~spA~----~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~-~g~~v~l~v~R~g-~~~   89 (91)
T 2pkt_A           35 TPGSKAA----LANLCIGDVITAIDGENTSNMT-HLEAQNRIKG-CTDNLTLTVARSE-HES   89 (91)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTCC-HHHHHHHHHT-CSSEEEEEEEEEC-CCC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc-CCCeEEEEEEECC-ccc
Confidence            4789999    9999999999999998865443 3377788887 7899999999988 543

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.23  E-value=1.7e-11  Score=91.06  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=55.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+||||+    +|||++||+|++|||++   +.+|.++..+++.. +|.+++|+|.|+| +.+++++++..
T Consensus       271 ~~~spA~----~aGL~~GDvI~~ing~~---v~~~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~l~~  333 (345)
T 3stj_A          271 LPGSGSA----KAGVKAGDIITSLNGKP---LNSFAELRSRIATTEPGTKVKLGLLRNG-KPLEVEVTLDT  333 (345)
T ss_dssp             CTTSHHH----HHTCCTTCEECEETTEE---CSCHHHHHHHHHTSCTTCEEEEEEEETT-EEEEEEEECEE
T ss_pred             ccCChHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEEcc
Confidence            4789999    99999999999999966   57899999999874 7899999999999 99999988864

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.23  E-value=1.9e-11  Score=73.68  Aligned_cols=52  Identities=15%  Similarity=0.165  Sum_probs=45.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.+. ++.++.++++..+ .++.++|.|++
T Consensus        34 ~~~spA~----~aGL~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~-~~v~l~v~R~~   85 (87)
T 2pa1_A           34 AERGKAK----DADLRPGDIIVAINGESAEGM-LHAEAQSKIRQSP-SPLRLQLDRIT   85 (87)
T ss_dssp             CSSSHHH----HTTCCTTCEEEEETTEESTTC-CHHHHHHHHHTCC-SSEEEEEEECC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCC-CeEEEEEEecC
Confidence            4789999    999999999999999875433 3899999999877 89999999987

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.23  E-value=4.2e-11  Score=87.51  Aligned_cols=62  Identities=11%  Similarity=0.167  Sum_probs=54.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEe-CCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLR-NEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R-~g~~~~~l~v~p~~   77 (96)
                      .+++||+    +|||++||+|++|||.+   +.+|.++..++.. .+|.+++|+|+| +| +.+++++++..
T Consensus       250 ~~~spA~----~aGl~~GD~I~~ing~~---v~~~~~l~~~l~~~~~g~~v~l~v~R~~g-~~~~~~v~~~~  313 (324)
T 1y8t_A          250 VAGGAAA----NAGVPKGVVVTKVDDRP---INSADALVAAVRSKAPGATVALTFQDPSG-GSRTVQVTLGK  313 (324)
T ss_dssp             CTTSTTT----TTTCCTTCEEEEETTEE---CCSHHHHHHHHHTSCTTCEEEEEEECSSC-CEEEEEEECEE
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHhcCCCCEEEEEEEECCC-CEEEEEEEEcc
Confidence            4789999    99999999999999966   5788999999976 478899999999 99 88888888764

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.22  E-value=5.2e-12  Score=77.46  Aligned_cols=54  Identities=15%  Similarity=0.310  Sum_probs=46.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTR   68 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~   68 (96)
                      .+++||+    +|||++||+|++|||.++.+. ++.++..+++.. +.++.|+|.|++ +.
T Consensus        38 ~~~spA~----~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~~-g~~v~l~v~r~~-~~   91 (96)
T 2v90_A           38 DPGLPAK----KAGMQAGDRLVAVAGESVEGL-GHEETVSRIQGQ-GSCVSLTVVDPE-AD   91 (96)
T ss_dssp             CTTSHHH----HTTCCTTEEEEEETTEECTTC-CHHHHHHHHHTT-TTEEEEEEECCC-TT
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCEEEEEEECCC-Cc
Confidence            4789999    999999999999999875442 488999999885 889999999988 54

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.22  E-value=7e-12  Score=75.94  Aligned_cols=53  Identities=17%  Similarity=0.250  Sum_probs=44.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g   65 (96)
                      .++|||+    +|||++||+|++|||.++.. .+|.++..+++.. ++.++.++|.|++
T Consensus        36 ~~~spA~----~aGl~~GD~I~~ing~~v~~-~~~~~~~~~l~~~~~g~~v~l~v~R~g   89 (90)
T 2eaq_A           36 EAGSPAE----FSQLQVDDEIIAINNTKFSY-NDSKEWEEAMAKAQETGHLVMDVRRYG   89 (90)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECCT-TCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEEccC-CCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            4789999    99999999999999977421 5788999888863 5789999999987

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.21  E-value=5.1e-12  Score=81.25  Aligned_cols=61  Identities=11%  Similarity=0.167  Sum_probs=52.8

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .+++||+    +|| |++||+|++|||++   +.+|.++..+++..++.++.|+|.|++ +.+...+.+.
T Consensus        56 ~~~spA~----~aG~l~~GD~I~~ing~~---v~~~~~~~~~l~~~~g~~v~l~v~R~g-~~~~~~~~~~  117 (124)
T 1wh1_A           56 DPNSIAA----KDGRIREGDRIIQINGIE---VQNREEAVALLTSEENKNFSLLIARPE-LQLDEGWMDD  117 (124)
T ss_dssp             CSSSHHH----HTCCCCTTCEEEEESSCB---CCSHHHHHHHHTCSSCCSCCEEEEECS-SCCCCCCCCS
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEE---CCCHHHHHHHHHhCCCCEEEEEEEECC-EEeecccCCC
Confidence            4789999    999 99999999999965   567899999999877889999999999 7777666654

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.20  E-value=1.8e-11  Score=74.93  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=45.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.++ ++.++.++++... .++.|+|+|++
T Consensus        38 ~~~spA~----~aGL~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~-~~v~l~v~R~g   89 (94)
T 1vb7_A           38 TERGKAE----AADLRPGDIIVAINGQSAENM-LHAEAQSKIRQSA-SPLRLQLDRSS   89 (94)
T ss_dssp             CTTSSHH----HHTCCTTCEEEEETTEECTTC-CHHHHHHHHHTCC-SSEEEEEECCC
T ss_pred             CCCCHHH----HCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCC-CcEEEEEEECC
Confidence            4789999    999999999999999886443 3588999998876 89999999998

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.20  E-value=3.9e-11  Score=72.35  Aligned_cols=52  Identities=13%  Similarity=0.273  Sum_probs=44.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.++. +.++..+++.. +.++.++|.|++
T Consensus        35 ~~~spA~----~aGl~~GD~I~~ing~~v~~~~-~~~~~~~~~~~-g~~v~l~v~R~g   86 (88)
T 2uzc_A           35 KDGGKAA----QANVRIGDVVLSIDGINAQGMT-HLEAQNKIKGC-TGSLNMTLQRES   86 (88)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTCC-HHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCCC-HHHHHHHHHhC-CCeEEEEEEeCC
Confidence            4789999    9999999999999998865543 47888888765 789999999987

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.19  E-value=2.8e-11  Score=73.20  Aligned_cols=52  Identities=15%  Similarity=0.241  Sum_probs=44.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||+++.++ ++.++...++.. +.++.++|.|++
T Consensus        35 ~~~spA~----~aGl~~GD~I~~ing~~v~~~-~~~~~~~~~~~~-g~~v~l~v~R~~   86 (89)
T 2q3g_A           35 TPGGKAA----QAGVAVGDWVLSIDGENAGSL-THIEAQNKIRAC-GERLSLGLSRAI   86 (89)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEEGGGC-CHHHHHHHHHTC-TTEEEEEEEEEC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhC-CCEEEEEEEeCC
Confidence            4789999    999999999999999886554 678888888765 778999999987

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.19  E-value=6e-11  Score=82.30  Aligned_cols=77  Identities=19%  Similarity=0.300  Sum_probs=58.1

Q ss_pred             CCCCCccccccccCCCCC-CEEEEECCeecCCcccHHHHH-HHHHhCCCceEEEEEEeCCc-eEEEEEEeecC-CCCeee
Q psy12583          8 SEGYPRQDVDVYQGLVKD-DIILEFGPINSSNFKSLQDIA-STVRAGVNTDIPITVLRNEG-TRQRLVLRPQP-FEGQGL   83 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~G-D~Il~vng~~~~~~~~~~di~-~~i~~~~g~~i~l~V~R~g~-~~~~l~v~p~~-~~~~~~   83 (96)
                      .++|||+    +|||++| |+|++|||+++.++   .++. .+++..++.+++++|.|++. +..++++.|.. |...+.
T Consensus        24 ~~~SpA~----~AGL~~G~D~I~~ing~~v~~~---~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~~~~~~~   96 (209)
T 3rle_A           24 QENSPGH----RAGLEPFFDFIVSINGSRLNKD---NDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGL   96 (209)
T ss_dssp             CTTSHHH----HTTCCTTTEEEEEETTEECCSS---SSHHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSSSSSSSS
T ss_pred             CCCCHHH----HCCCCcCCeEEEEECCEECcCH---HHHHHHHHhcCCCCEEEEEEEecCCceEEEEEEcccccccccCc
Confidence            5789999    9999999 99999999876444   4433 45566778999999999641 56677776653 445677


Q ss_pred             EEEEEecc
Q psy12583         84 VGCYFLNV   91 (96)
Q Consensus        84 lGi~~~~~   91 (96)
                      +|+.+.++
T Consensus        97 lGi~~~~~  104 (209)
T 3rle_A           97 LGVSIRFC  104 (209)
T ss_dssp             SCEEEEEE
T ss_pred             cceEEeec
Confidence            88887743

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.18  E-value=4.1e-11  Score=74.28  Aligned_cols=52  Identities=19%  Similarity=0.258  Sum_probs=45.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .++|||+    +|||++||+|++|||.++.+. +|+++...++...+.++.++|.|.
T Consensus        53 ~~~spA~----~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           53 SEGGPAE----IAGLQIGDKIMQVNGWDMTMV-THDQARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTC-CHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCEEEEEEEcC
Confidence            4789999    999999999999999886554 488999999887888999999984

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=3.6e-11  Score=74.34  Aligned_cols=51  Identities=18%  Similarity=0.253  Sum_probs=45.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.+.. |.++...++.  +.++.|+|+|++
T Consensus        44 ~~~spA~----~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~~--~~~v~l~v~R~g   94 (100)
T 2eeh_A           44 EEGSSAE----RAGLCVGDKITEVNGLSLESTT-MGSAVKVLTS--SSRLHMMVRRMG   94 (100)
T ss_dssp             CTTSHHH----HHTCCSSCEEEEETTEECSSCC-HHHHHHHHHS--CSSEEEEEEECS
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCCC-HHHHHHhhcC--CCEEEEEEEECC
Confidence            4789999    9999999999999999877765 8888888876  689999999998

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.17  E-value=3.9e-11  Score=74.64  Aligned_cols=54  Identities=20%  Similarity=0.345  Sum_probs=46.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTR   68 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~   68 (96)
                      .+++||+    +|||++||+|++|||.++.+. +|.++..+++.. +.++.|+|.|++ +.
T Consensus        37 ~~~spA~----~aGL~~GD~I~~ing~~v~~~-~~~~~~~~l~~~-g~~v~l~v~R~g-~~   90 (103)
T 1v5l_A           37 TPGSKAA----AANLCPGDVILAIDGFGTESM-THADAQDRIKAA-SYQLCLKIDRAE-TR   90 (103)
T ss_dssp             CTTSTTG----GGTCCTTCBEEEETTEECSSC-CHHHHHHHHTTC-CSEEECEECCCT-TT
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhC-CCeEEEEEEECC-eE
Confidence            4789999    999999999999999775332 389999999987 889999999998 54

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.17  E-value=2.1e-11  Score=74.73  Aligned_cols=52  Identities=13%  Similarity=0.210  Sum_probs=45.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.+. ++.++..+++. ++.++.|+|.|++
T Consensus        40 ~~~spA~----~aG~l~~GD~I~~ing~~v~~~-~~~~~~~~l~~-~g~~v~l~v~R~~   92 (97)
T 2jil_A           40 RPGGPAD----REGTIKPGDRLLSVDGIRLLGT-THAEAMSILKQ-CGQEAALLIEYDV   92 (97)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECSSC-CHHHHHHHHHH-SCSEEEEEEEEEC
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            4789999    999 999999999999875432 38899999998 7899999999987

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=5.3e-11  Score=72.81  Aligned_cols=52  Identities=10%  Similarity=0.204  Sum_probs=44.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.++ ++.++...++. .+.++.|+|.|++
T Consensus        40 ~~~spA~----~aGl~~GD~I~~ing~~v~~~-~~~~~~~~~~~-~g~~v~l~v~R~g   91 (94)
T 2eeg_A           40 HAGSKAA----LAALCPGDLIQAINGESTELM-THLEAQNRIKG-CHDHLTLSVSSGP   91 (94)
T ss_dssp             CSSSHHH----HTTCCTTCEEEEETTEETTTC-CHHHHHHHHHT-CCSCEEEEEECCS
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            4789999    999999999999999887655 46777777776 6788999999987

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.17  E-value=4.2e-12  Score=80.40  Aligned_cols=61  Identities=20%  Similarity=0.377  Sum_probs=49.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p   75 (96)
                      .+|+||+    +|||++||+|++|||.++.+ .++.++..+++.. +.++.++|.|++ +..++.+.|
T Consensus        46 ~~~spA~----~aGL~~GD~I~~ing~~v~~-~~~~~~~~~l~~~-g~~v~l~v~R~~-~~~~~~~~~  106 (114)
T 2edz_A           46 EEGSPAE----KAGLLDGDRVLRINGVFVDK-EEHAQVVELVRKS-GNSVTLLVLDGD-SYEKAVKNQ  106 (114)
T ss_dssp             CTTCTTG----GGTCCTTCEEEEESSSBCSS-SCHHHHHHHHHHT-CSEEEEEEECHH-HHHHHHHHT
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCC-CCHHHHHHHHHcC-CCEEEEEEEECC-cceehhhcC
Confidence            4789999    99999999999999977544 3478899999875 789999999988 655554444

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.17  E-value=1.2e-11  Score=79.42  Aligned_cols=53  Identities=17%  Similarity=0.338  Sum_probs=46.3

Q ss_pred             CCCccccccccCCCCCCEEEEECCeecCCcccH--HHHHHHHHhCCCceEEEEEEeCCceEEEE
Q psy12583         10 GYPRQDVDVYQGLVKDDIILEFGPINSSNFKSL--QDIASTVRAGVNTDIPITVLRNEGTRQRL   71 (96)
Q Consensus        10 ~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~--~di~~~i~~~~g~~i~l~V~R~g~~~~~l   71 (96)
                      ++||+    +|||++||+|++|||.+   +.+|  .++..+++.. +.++.|+|+|++ +..++
T Consensus        56 ~spA~----~aGL~~GD~Il~Vng~~---v~~~~~~dl~~~l~~~-g~~v~l~v~R~g-~~~~~  110 (118)
T 2yub_A           56 ISPNN----RNAIHPGDRILEINGTP---VRTLRVEEVEDAIKQT-SQTLQLLIEHDP-VPQRL  110 (118)
T ss_dssp             SCTTH----HHHCCTTCCEEEESSSB---TTTSCHHHHHHHHHCC-SSCEEEEEEECS-SCCCC
T ss_pred             CChHH----HcCCCCCCEEEEECCEE---CCCcCHHHHHHHHHhC-CCEEEEEEEECC-EEEee
Confidence            89999    99999999999999965   5666  9999999987 889999999999 65444

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.17  E-value=2.1e-11  Score=78.33  Aligned_cols=63  Identities=19%  Similarity=0.193  Sum_probs=54.8

Q ss_pred             CCCCCccccccccCC-CCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGL-VKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGL-k~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .+|+||+    ++|| ++||+|++|||+++.+. ++.++..+++...+.++.++|.|++ +.+.+++.+.
T Consensus        41 ~~~spA~----~aGll~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~g~~v~l~v~R~g-~~~~~~~~~~  104 (127)
T 1b8q_A           41 IRGGAAE----QSGLIQAGDIILAVNDRPLVDL-SYDSALEVLRGIASETHVVLILRGP-EGFTTHLETT  104 (127)
T ss_dssp             SSSSSHH----HHSSCCTTTCCCEETTEECSSS-CHHHHHHHHHSCCSSCEEEEEECCC-CSEEECCCCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCeEEEEEEeCC-ceEEEEEEEE
Confidence            4789999    9999 99999999999875432 3899999999888899999999999 8888888775

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.16  E-value=6e-11  Score=72.80  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=44.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.++ ++.++..+++. ++.++.|+|.|++
T Consensus        45 ~~~spA~----~aG~L~~GD~I~~ing~~v~~~-~~~~~~~~l~~-~g~~v~l~v~R~g   97 (98)
T 1ihj_A           45 VPDSPAH----LCGRLKVGDRILSLNGKDVRNS-TEQAVIDLIKE-ADFKIELEIQTFD   97 (98)
T ss_dssp             CTTSHHH----HHCSCCTTCEEEEETTEECTTC-CHHHHHHHHHH-SCSEEEEEEEEC-
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHhc-CCCeEEEEEEeCC
Confidence            4789999    999 999999999999886544 35788888887 7889999999987

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.16  E-value=4.8e-11  Score=72.57  Aligned_cols=52  Identities=17%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             CCCCCccccccc-cCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVY-QGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~-aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    + +||++||+|++|||+++..+ +|+++.++++..++ ++.|+|.|.+
T Consensus        33 ~~gspA~----~~agL~~GD~I~~Ing~~v~~~-~~~~~~~~l~~~~~-~v~l~v~r~~   85 (88)
T 1kwa_A           33 MHGGMIH----RQGTLHVGDEIREINGISVANQ-TVEQLQKMLREMRG-SITFKIVPSY   85 (88)
T ss_dssp             CTTSHHH----HHTCCCTTCEEEEETTEEGGGS-CHHHHHHHHHHCCE-EEEEEEECCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHhcCCC-cEEEEEECCc
Confidence            4789999    9 89999999999999875332 79999999999887 9999999987

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.14  E-value=7.7e-11  Score=72.31  Aligned_cols=55  Identities=22%  Similarity=0.243  Sum_probs=45.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQ   69 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~   69 (96)
                      .+++||+    +|| |++||+|++|||.++.++ ++.++..+++... .++.++|.|++ ...
T Consensus        38 ~~~spA~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~~~~~~-~~v~l~v~R~~-~~~   93 (98)
T 2opg_A           38 YEEGAAC----KDGRLWAGDQILEVNGIDLRKA-THDEAINVLRQTP-QRVRLTLYRDE-APY   93 (98)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHTCC-SEEEEEEEECS-SCC
T ss_pred             CCCChHH----hCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCC-CeEEEEEEcCC-CCC
Confidence            4789999    999 999999999999886554 3778888887654 79999999988 543

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.14  E-value=1e-10  Score=71.85  Aligned_cols=52  Identities=12%  Similarity=0.187  Sum_probs=45.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||.++.++ ++.++..+++ ..+.++.|+|.|++
T Consensus        38 ~~~spA~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~l~-~~g~~v~l~v~R~~   90 (97)
T 1n7e_A           38 TKGGLAE----RTGAIHIGDRILAINSSSLKGK-PLSEAIHLLQ-MAGETVTLKIKKQT   90 (97)
T ss_dssp             CTTSHHH----HHTCCCTTCEEEEETTEECTTC-CHHHHHHHHH-TCCSEEEEEEECCC
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHH-cCCCeEEEEEEeCC
Confidence            4789999    999 999999999999886544 4788888888 57789999999988

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.13  E-value=1.2e-11  Score=77.59  Aligned_cols=63  Identities=19%  Similarity=0.261  Sum_probs=52.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+++||+    +|| |++||+|++|||.++.+ .++.++...++.. +.++.|+|.|++ +...++++|..
T Consensus        44 ~~~spA~----~aG~L~~GD~I~~vng~~v~~-~~~~~~~~~~~~~-~~~v~l~v~R~~-~~~~~~v~~~~  107 (110)
T 1um1_A           44 LPGSPAA----ADGRLSLGDRILEVNGSSLLG-LGYLRAVDLIRHG-GKKMRFLVAKSD-VETAKKIHSGP  107 (110)
T ss_dssp             CTTSHHH----HHSCCCTTCEEEEESSCBCSS-CCHHHHHHHHHTC-CSEEEEEEECCC-HHHHHHHSSCS
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCC-CCHHHHHHHHHcC-CCeEEEEEEeCC-cceeEEEEecC
Confidence            4789999    999 99999999999977544 3577888888764 789999999999 77777777654

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.13  E-value=8.8e-11  Score=74.63  Aligned_cols=53  Identities=11%  Similarity=0.166  Sum_probs=45.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|||++||+|++|||.++..+ +|+++.++++...+++++++|.|..
T Consensus        52 ~~gspA~----~AGL~~GD~Il~VnG~~v~~~-~~~dv~~~i~~~~~~~v~l~V~~~~  104 (109)
T 2vsv_A           52 DPYCSAS----VAGAREGDYIVSIQLVDCKWL-TLSEVMKLLKSFGEDEIEMKVVSLL  104 (109)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTC-CHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCeEEEEEEECC
Confidence            4789999    999999999999999875433 6789999999877778999999865

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.12  E-value=2.3e-11  Score=74.75  Aligned_cols=53  Identities=25%  Similarity=0.308  Sum_probs=45.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .++|||+    +|||++||+|++|||+++.+. ++.++.++++..++..+.++|.|++
T Consensus        41 ~~~spA~----~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~~~~~~l~v~R~g   93 (98)
T 2jxo_A           41 DPDSPAE----ASGLRAQDRIVEVNGVCMEGK-QHGDVVSAIRAGGDETKLLVVDRET   93 (98)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTC-CHHHHHHHHHTTTTEEEEEECCHHH
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCcEEEEEEECCc
Confidence            4789999    999999999999999875332 3899999999888888889999976

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=3e-11  Score=77.78  Aligned_cols=62  Identities=16%  Similarity=0.110  Sum_probs=50.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+|+||+    +|||++||+|++|||.++.++. +.++...++.  +.++.|+|+|++ +..+++++|..
T Consensus        54 ~~~spA~----~aGL~~GD~I~~vng~~v~~~~-~~~~~~~~~~--~~~v~l~v~R~g-~~~~~~v~~~~  115 (128)
T 1uf1_A           54 DPGSEAE----GSGLKVGDQILEVNGRSFLNIL-HDEAVRLLKS--SRHLILTVKDVG-RLPHARTTVDE  115 (128)
T ss_dssp             CTTCHHH----HHTCCTTCEEEEETTEECSSCC-HHHHHHHHTT--CSEEEEEEECCS-CCSSCSCCCCS
T ss_pred             CCCCHHH----HCCCCCCCEEEEECCEECCCCC-HHHHHHHHhc--CCeEEEEEEECC-ccccccccccc
Confidence            4789999    9999999999999998865553 3666666655  469999999999 88877777763

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.11  E-value=5.1e-11  Score=74.41  Aligned_cols=52  Identities=17%  Similarity=0.356  Sum_probs=45.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.++ ++.++..+++. .+.++.|+|.|++
T Consensus        52 ~~~spA~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~l~~-~g~~v~l~v~R~~  104 (108)
T 2jre_A           52 IPGSAAA----LDGRIEPNDKILRVDDVNVQGM-AQSDVVEVLRN-AGNPVRLLLIRRL  104 (108)
T ss_dssp             CTTSHHH----HHSSCCSSEEEEEETTEECTTS-CHHHHHHHHHH-HCSEEEEEEEECC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            4789999    999 999999999999886554 47888888887 6789999999988

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.11  E-value=2.5e-10  Score=68.84  Aligned_cols=52  Identities=19%  Similarity=0.356  Sum_probs=41.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g   65 (96)
                      .+++||+     |||++||+|++|||.++.++ ++.++...++. .++.++.++|.|++
T Consensus        34 v~~spA~-----aGl~~GD~I~~vng~~v~~~-~~~~~~~~l~~~~~g~~v~l~v~R~g   86 (88)
T 3bpu_A           34 IVDSPRS-----RGLKEGDLIVEVNKKNVQAL-THNQVVDMLVESPKGSEVTLLVQRQT   86 (88)
T ss_dssp             CCC--CC-----TTCCTTCEEEEETTEECTTS-CHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred             ecCChhH-----hCCCCCCEEEEECCEEcCCC-CHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            3789998     69999999999999886554 36888888884 56889999999987

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=9.4e-11  Score=72.89  Aligned_cols=53  Identities=15%  Similarity=0.122  Sum_probs=45.8

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||+++... ++.++..+++..+ +.++.|+|.|++
T Consensus        42 ~~~spA~----~aG~L~~GD~Il~ing~~v~~~-~~~~~~~~l~~~~~g~~v~l~v~R~~   96 (103)
T 1uep_A           42 IAMGSAD----RDGRLHPGDELVYVDGIPVAGK-THRYVIDLMHHAARNGQVNLTVRRKV   96 (103)
T ss_dssp             CTTSTTG----GGTCCCTTCEEEEETTEECTTS-CHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCChHH----hCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCCcEEEEEEeCC
Confidence            3789999    999 999999999999886443 6889999998765 789999999987

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.11  E-value=9.9e-11  Score=72.03  Aligned_cols=52  Identities=19%  Similarity=0.246  Sum_probs=44.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.+. +|.++..+++ .++..+.++|.|++
T Consensus        42 ~~~spA~----~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~-~~g~~v~l~v~r~~   93 (99)
T 3khf_A           42 EDGSPAQ----EAGLRAGDLITHINGESVLGL-VHMDVVELLL-KSGNKISLRTTALE   93 (99)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTC-CHHHHHHHHH-HSCSEEEEEEECSC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHh-cCCCEEEEEEEECC
Confidence            4789999    999999999999999875432 7888988888 46789999999987

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.11  E-value=1.4e-10  Score=69.38  Aligned_cols=51  Identities=10%  Similarity=0.179  Sum_probs=43.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R   63 (96)
                      .+++||+    ++| |++||+|++|||.++.++ ++.++.++++..+ +.++.++|.|
T Consensus        33 ~~~spA~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           33 VLDGPAA----LDGKMETGDVIVSVNDTCVLGH-THAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCCeEEEEEEC
Confidence            4789999    999 999999999999876443 5788889998764 7889999876

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.11  E-value=1.4e-10  Score=85.10  Aligned_cols=59  Identities=24%  Similarity=0.446  Sum_probs=52.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .++|||+    +|||++||+|++|||.+   +.+|.++.++++.  ++++.|+|+|++ +.++++++|.
T Consensus       264 ~~~spA~----~aGl~~GDvI~~ing~~---v~~~~~l~~~l~~--~~~v~l~v~R~g-~~~~~~v~~~  322 (325)
T 1lcy_A          264 ILGSPAH----RAGLRPGDVILAIGEQM---VQNAEDVYEAVRT--QSQLAVQIRRGR-ETLTLYVTPE  322 (325)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEE---CCSHHHHHHHHTT--CSSEEEEEEETT-EEEEEEECCE
T ss_pred             CcCChHH----HCCCCCCCEEEEECCEE---cCCHHHHHHHHhC--CCeEEEEEEECC-EEEEEEEEEe
Confidence            4789999    99999999999999966   5788999999886  579999999999 9999988875

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.11  E-value=1.7e-10  Score=70.11  Aligned_cols=52  Identities=21%  Similarity=0.342  Sum_probs=44.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|||++||+|++|||.++.++ ++.++..+++.. +..+.++|.|++
T Consensus        32 ~~~spA~----~aGl~~GD~I~~vng~~v~~~-~~~~~~~~l~~~-~~~v~l~v~R~~   83 (91)
T 2f5y_A           32 DSGGPAE----RAGLQQLDTVLQLNERPVEHW-KCVELAHEIRSC-PSEIILLVWRMV   83 (91)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTC-CHHHHHHHHHTC-SSEEEEEEEECC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            4789999    999999999999999886543 578888888864 458999999988

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.11  E-value=1.3e-10  Score=68.50  Aligned_cols=52  Identities=21%  Similarity=0.366  Sum_probs=42.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++... +|.++..+++...+ ++.++|.|++
T Consensus        29 ~~~s~A~----~aG~l~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~~-~v~l~v~R~g   81 (81)
T 2rcz_A           29 SQDSLAA----RDGNIQEGDVVLKINGTVTENM-SLTDAKTLIERSKG-KLKMVVQRDE   81 (81)
T ss_dssp             CTTSHHH----HHSSCCTTCEEEEETTEECTTC-CHHHHHHHHHTSTT-EEEEEEEC--
T ss_pred             CCCChHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHCCCC-eEEEEEEeCC
Confidence            4789999    999 999999999999775322 78899999987654 8999999975

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.11  E-value=3.2e-10  Score=71.03  Aligned_cols=52  Identities=13%  Similarity=0.203  Sum_probs=44.4

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||.++.+ .+|.++..+++.. +.++.|+|.|++
T Consensus        40 ~~gspA~----~aG~L~~GD~Il~Vng~~v~~-~~~~~~~~~l~~~-~~~v~l~v~R~~   92 (106)
T 4amh_A           40 IEGGAAH----KDGKLQIGDKLLAVNNVALEE-VTHEEAVTALKNT-SDFVYLKVAKPG   92 (106)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECSS-CCHHHHHHHHHSC-CSEEEEEEECCS
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCC-CCHHHHHHHHhCC-CCeEEEEEEeCC
Confidence            5789999    999 99999999999988654 4678888888765 569999999987

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.11  E-value=1.7e-10  Score=70.55  Aligned_cols=52  Identities=12%  Similarity=0.177  Sum_probs=45.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.++ ++.++..+++. .+.++.|+|.|++
T Consensus        41 ~~~spA~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~l~~-~g~~v~l~v~R~~   93 (96)
T 1d5g_A           41 IPQGAAE----SDGRIHKGDRVLAVNGVSLEGA-THKQAVETLRN-TGQVVHLLLEKGQ   93 (96)
T ss_dssp             CTTSHHH----HTTCCCTTCEEEEETTEECTTC-CHHHHHHHHHS-CCSEEEEEEECCS
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEcCC
Confidence            4789999    999 999999999999886554 67888888887 5789999999986

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.11  E-value=1.2e-10  Score=77.67  Aligned_cols=73  Identities=18%  Similarity=0.318  Sum_probs=53.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecCCCCeeeEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGCY   87 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~~~~~~~lGi~   87 (96)
                      .+||||+    +|||++||+|++|||.++.++.. .....+++..++.++.++|.|++ +.+++++.+..   ...+|+.
T Consensus        35 ~~~spA~----~aGl~~GD~I~~ing~~v~~~~~-~~~~~~~~~~~~~~v~l~vr~~~-~~~~v~l~~~~---~~~lG~~  105 (166)
T 1w9e_A           35 QANSPAS----LVGLRFGDQVLQINGENCAGWSS-DKAHKVLKQAFGEKITMTIRDRP-FERTITMHKDS---TGHVGFI  105 (166)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTCCH-HHHHHHHHHCCSSEEEEEEECCT-TCEEEEEECCT---TSCCSEE
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCCCH-HHHHHHHhcCCCCEEEEEEEcCC-CcEEEEEecCC---CCcEeEE
Confidence            4789999    99999999999999987544422 12346666777889999997776 77778877532   2346765


Q ss_pred             Ee
Q psy12583         88 FL   89 (96)
Q Consensus        88 ~~   89 (96)
                      +.
T Consensus       106 ~~  107 (166)
T 1w9e_A          106 FK  107 (166)
T ss_dssp             EE
T ss_pred             Ee
Confidence            53

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.11  E-value=3e-10  Score=67.78  Aligned_cols=52  Identities=19%  Similarity=0.309  Sum_probs=42.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.++. +.++..+++.. +..+.++|.|+.
T Consensus        31 ~~~spA~----~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~~-~~~v~l~v~R~~   82 (83)
T 2kv8_A           31 MRGSPAD----FVGLRAGDQILAVNEINVKKAS-HEDVVKLIGKC-SGVLHMVIAEGV   82 (83)
T ss_dssp             CTTSTTT----TTTCCTTCEEEEETTEECSSCC-HHHHHHHHTTC-SSCEEEEEECCC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCCC-HHHHHHHHHhC-CCeEEEEEEcCC
Confidence            4789999    9999999999999998865443 47888888765 467999999964

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.11  E-value=1.9e-10  Score=71.21  Aligned_cols=52  Identities=17%  Similarity=0.347  Sum_probs=44.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.+. ++.++..+++. .+.++.++|.|++
T Consensus        38 ~~~spA~----~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~-~g~~v~l~v~r~~   89 (102)
T 2d90_A           38 EPGSPAE----AAGLKNNDLVVAVNGKSVEAL-DHDGVVEMIRK-GGDQTTLLVLDKE   89 (102)
T ss_dssp             CTTSTTT----TTTCCTTCEEEEESSCBCTTS-CHHHHHHHHHH-STTEEEEEECSTT
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCEEEEEEEECC
Confidence            4789999    999999999999999876554 37888888887 4779999999876

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.10  E-value=1.3e-10  Score=69.53  Aligned_cols=52  Identities=10%  Similarity=0.335  Sum_probs=43.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.++ ++.++...++.. +.++.++|.|++
T Consensus        33 ~~~spA~----~aGl~~GD~I~~vng~~v~~~-~~~~~~~~~~~~-~~~v~l~v~R~~   84 (85)
T 1rgw_A           33 TPGSKAA----QSQLSQGDLVVAIDGVNTDTM-THLEAQNKIKSA-SYNLSLTLQKSK   84 (85)
T ss_dssp             CTTSHHH----HSSCCCCSBEEEETTEECTTC-CHHHHHHHHTTC-SSCEEEEEESCC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCc-CHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            4789999    999999999999999886554 457777777754 457999999986

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.10  E-value=2.1e-11  Score=76.79  Aligned_cols=62  Identities=15%  Similarity=0.201  Sum_probs=52.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .+++||+    +|| |++||+|++|||.++.+. ++.++..+++.. +.++.|+|.|++ ...++++.|.
T Consensus        43 ~~~s~A~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~~~~~-g~~v~l~v~R~~-~~~~~~v~p~  105 (113)
T 2g5m_B           43 TEGGAAH----RDGRIQVNDLLVEVDGTSLVGV-TQSFAASVLRNT-KGRVRFMIGRER-PGEQSEVAQL  105 (113)
T ss_dssp             CTTSHHH----HHTCSCTTCBEEEETTEECSSC-CHHHHHHHHHHS-CSSCEEEEEECC-CCTTSSCSSC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHhcC-CCeEEEEEEeCC-CCCcchhhhh
Confidence            4789999    999 999999999999886554 477888888875 789999999999 7777777665

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.10  E-value=2.9e-10  Score=86.55  Aligned_cols=62  Identities=23%  Similarity=0.373  Sum_probs=55.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQPF   78 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~~   78 (96)
                      .+++||+    ++||++||+|++|||++   +.+|+++.++++.+++ ++.|+|+|++ +.+.+.+.|.+|
T Consensus       371 ~~~spA~----~aGL~~GD~I~~vng~~---v~~~~~~~~~l~~~~~-~v~l~v~R~g-~~~~~~~~~~~~  432 (436)
T 4a8c_A          371 VKGSPAA----QAGLQKDDVIIGVNRDR---VNSIAEMRKVLAAKPA-IIALQIVRGN-ESIYLLMRLEHH  432 (436)
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHhCCC-eEEEEEEECC-EEEEEEEEeccc
Confidence            4689999    99999999999999966   5789999999998654 8999999999 999999999874

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.10  E-value=2.6e-10  Score=69.65  Aligned_cols=51  Identities=14%  Similarity=0.229  Sum_probs=42.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||+++.+... .++...++  .+.++.|+|.|++
T Consensus        37 ~~~spA~----~aGL~~GD~I~~ing~~v~~~~~-~~~~~~~~--~g~~v~l~v~R~~   87 (93)
T 2dls_A           37 RPGGAAM----KAGVKEGDRIIKVNGTMVTNSSH-LEVVKLIK--SGAYVALTLLGSS   87 (93)
T ss_dssp             CSSSTTT----TTTCCSSCEEEEETTEECSSSCH-HHHHHHHT--SSSEEEEEEECCC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCCCH-HHHHHhhc--CCCEEEEEEEECC
Confidence            4789999    99999999999999988766543 35656665  5789999999986

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.10  E-value=1.2e-10  Score=73.07  Aligned_cols=54  Identities=20%  Similarity=0.287  Sum_probs=43.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTR   68 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~   68 (96)
                      .+++||+    +|||++||+|++|||+++.+.. +.+....++. ++.++.|+|+|++ +.
T Consensus        54 ~~~spA~----~aGL~~GD~I~~ing~~v~~~~-~~~~~~~~~~-~g~~v~l~v~R~g-~~  107 (110)
T 1x5q_A           54 SEEGPAA----RAGVRVGDKLLEVNGVALQGAE-HHEAVEALRG-AGTAVQMRVWRES-GP  107 (110)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTCC-HHHHHHHHHS-CCSEEEEEEEECS-SC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCcC-HHHHHHHhhC-CCCeEEEEEEECC-cc
Confidence            4789999    9999999999999998866553 4445555555 7889999999998 54

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.09  E-value=1.1e-10  Score=86.46  Aligned_cols=62  Identities=19%  Similarity=0.360  Sum_probs=54.3

Q ss_pred             CCCCCccccccccCCCC-----------CCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQGLVK-----------DDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~-----------GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p   75 (96)
                      .+++||+    +|||++           ||+|++|||++   +.+|+++..++.. .+|.+++|+|+|++ +.+++++++
T Consensus       259 ~~~spA~----~AGl~~~~~~~~~~l~~GDvI~~ing~~---v~~~~dl~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~l  330 (348)
T 3qo6_A          259 PPSGPAG----KAGLQSTKRDGYGRLVLGDIITSVNGTK---VSNGSDLYRILDQCKVGDEVTVEVLRGD-HKEKISVTL  330 (348)
T ss_dssp             CSSSHHH----HHTCCCCEECSSSCEECCCEECEETTBC---CSSSHHHHHHHTTCCTTCEEEEEEECSS-SEEEEEEEC
T ss_pred             cCCChHH----HcCCccccccccCCCCCCCEEEEECCEE---eCCHHHHHHHHHhCCCcCEEEEEEEECC-EEEEEEEEE
Confidence            5789999    999999           99999999955   6788999999965 46899999999999 988888887


Q ss_pred             cC
Q psy12583         76 QP   77 (96)
Q Consensus        76 ~~   77 (96)
                      ..
T Consensus       331 ~~  332 (348)
T 3qo6_A          331 EP  332 (348)
T ss_dssp             EE
T ss_pred             cc
Confidence            64

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.09  E-value=1.2e-10  Score=70.55  Aligned_cols=52  Identities=17%  Similarity=0.342  Sum_probs=44.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.++ ++.++..+++.. +.++.|+|.|.+
T Consensus        36 ~~~spA~----~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~~-~~~v~l~v~r~~   87 (90)
T 2he4_A           36 DPGSPAA----RSGLRAQDRLIEVNGQNVEGL-RHAEVVASIKAR-EDEARLLVVGPS   87 (90)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTS-CHHHHHHHHTTS-SSEEEEEEECCC
T ss_pred             CCCChHH----HCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCcEEEEEEccC
Confidence            4789999    999999999999999875443 248899999876 789999999987

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.09  E-value=1.9e-10  Score=72.61  Aligned_cols=52  Identities=19%  Similarity=0.305  Sum_probs=45.1

Q ss_pred             CCCCCccccccc-cCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVY-QGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~-aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    + |||++||+|++|||+++.++ .|.++.++++. .+..+.|+|.|++
T Consensus        51 ~~~spA~----~~agL~~GD~I~~ing~~v~~~-~~~~~~~~l~~-~g~~v~l~v~r~~  103 (114)
T 1uew_A           51 IDGSPAD----RCAKLKVGDRILAVNGQSIINM-PHADIVKLIKD-AGLSVTLRIIPQE  103 (114)
T ss_dssp             CTTCTTG----GGSSCCTTCBEEEETTBCTTTS-CHHHHHHHHHH-TTTEEEEEECCCS
T ss_pred             CCCChHH----HhCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            4789999    9 99999999999999775332 37899999998 7889999999988

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.09  E-value=4e-11  Score=75.97  Aligned_cols=55  Identities=18%  Similarity=0.228  Sum_probs=46.6

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTR   68 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~   68 (96)
                      .+++||+    ++| |++||+|++|||.++....+|.++..+++. .+..+.|+|.|++ +.
T Consensus        57 ~~~spA~----~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~-~~  112 (117)
T 2o2t_A           57 QEGSVAH----RDGRLKETDQILAINGQALDQTITHQQAISILQK-AKDTVQLVIARGS-LP  112 (117)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH-CCSEEEEEEESSC-CG
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCEEEEEEEeCC-cc
Confidence            4789999    999 999999999999885422378999999987 5789999999998 54

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.09  E-value=2e-10  Score=71.10  Aligned_cols=52  Identities=21%  Similarity=0.346  Sum_probs=43.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.++ ++.++..+++...+ .+.|+|+|++
T Consensus        44 ~~~spA~----~aGL~~GD~I~~vng~~v~~~-~~~~~~~~l~~~~~-~v~l~v~R~~   95 (100)
T 1whd_A           44 DSGGPAE----RAGLQQLDTVLQLNERPVEHW-KCVELAHEIRSCPS-EIILLVWRVS   95 (100)
T ss_dssp             CTTSHHH----HHTCCSSCEEEEETTEECTTC-CHHHHHHHHHHCSS-EEEEEEEECC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCC-eEEEEEEECC
Confidence            4789999    999999999999999876443 57888889987654 5999999976

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.09  E-value=4.9e-11  Score=76.54  Aligned_cols=55  Identities=9%  Similarity=0.060  Sum_probs=46.4

Q ss_pred             CCCCCcccccccc-CCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEE
Q psy12583          8 SEGYPRQDVDVYQ-GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQ   69 (96)
Q Consensus         8 ~~~~pa~~~~~~a-GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~   69 (96)
                      .+++||+    ++ ||++||+|++|||.++.++ ++.++..+++... ..++|+|.|++ +..
T Consensus        61 ~~~spA~----~aggL~~GD~Il~VnG~~v~~~-~~~~~~~~l~~~~-~~v~l~v~r~g-~~~  116 (120)
T 2iwo_A           61 HPTGVAA----QTQKLRVGDRIVTICGTSTEGM-THTQAVNLLKNAS-GSIEMQVVAGG-DVS  116 (120)
T ss_dssp             CTTSHHH----HHTCCCTTCEEEEETTEECTTC-BHHHHHHHHHHCC-SEEEEEEECCT-TSS
T ss_pred             CCCCHHH----HhCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCC-CeEEEEEEECC-ccc
Confidence            4789999    99 9999999999999886554 6888888998875 46999999998 543

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.09  E-value=2e-10  Score=73.54  Aligned_cols=53  Identities=19%  Similarity=0.279  Sum_probs=45.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.++ +++++.++++.. ++.++.|+|.|++
T Consensus        66 ~~gspA~----~aG~L~~GD~Il~Ing~~v~~~-~~~~~~~~l~~~~~g~~v~l~v~R~g  120 (121)
T 2kom_A           66 LPRGAAI----QDGRLKAGDRLIEVNGVDLVGK-SQEEVVSLLRSTKMEGTVSLLVFRQE  120 (121)
T ss_dssp             CTTSHHH----HHTCCCSSSEEEEETTEECTTS-CHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEEcCCC-CHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence            4789999    999 999999999999886543 478888999886 4789999999987

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.08  E-value=8.5e-11  Score=73.15  Aligned_cols=52  Identities=21%  Similarity=0.380  Sum_probs=44.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|||++||+|++|||.++.++. +.++..+++. .+.++.++|.|++
T Consensus        34 ~~~spA~----~aGl~~GD~I~~ing~~v~~~~-~~~~~~~l~~-~g~~v~l~v~r~~   85 (106)
T 3ngh_A           34 EEGSPAE----KAGLLDGDRVLRINGVFVDKEE-HAQVVELVRK-SGNSVTLLVLDGD   85 (106)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTSC-HHHHHHHHHH-TTTEEEEEEECHH
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCCC-HHHHHHHHHh-CCCEEEEEEEECC
Confidence            4789999    9999999999999998865553 6688888884 5779999999987

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.08  E-value=2.5e-10  Score=71.53  Aligned_cols=53  Identities=19%  Similarity=0.292  Sum_probs=45.8

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||.++.++ ++.++..+++.. ++.++.|+|.|++
T Consensus        47 ~~~spA~----~aG~l~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~~g~~v~l~v~R~~  101 (111)
T 2koj_A           47 LPRGAAI----QDGRLKAGDRLIEVNGVDLAGK-SQEEVVSLLRSTKMEGTVSLLVFRQE  101 (111)
T ss_dssp             CSSSHHH----HHCSSCTTCEEEEETTEECTTS-CHHHHHHHHHHCCCSSEEEEEEEECC
T ss_pred             CCCChHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            3789999    999 999999999999886443 478889999885 4889999999988

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.08  E-value=1.7e-10  Score=74.70  Aligned_cols=53  Identities=15%  Similarity=0.205  Sum_probs=46.9

Q ss_pred             CCCCCcccccccc-CCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQ-GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~a-GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++ ||++||+|++|||+++..+ +|+++.++++..++..+.++|.|++
T Consensus        65 ~~gs~A~----~aggL~~GD~Il~Vng~~v~~~-~~~~~~~~l~~~~~~~v~l~v~r~~  118 (130)
T 1i16_A           65 FKGAASE----QSETVQPGDEILQLGGTAMQGL-TRFEAWNIIKALPDGPVTIVIRRKS  118 (130)
T ss_dssp             CSSCCCS----SSCCCCTTCCEEECSSCBGGGS-CHHHHHHHHHTSCSSEEEEEEEEES
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCceEEEEEEeCC
Confidence            4799999    99 9999999999999775544 6899999999988889999999976

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.4e-10  Score=71.94  Aligned_cols=52  Identities=17%  Similarity=0.253  Sum_probs=45.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.++ ++.++..+++. .+.++.|+|.|++
T Consensus        46 ~~~spA~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~~~~-~g~~v~l~v~R~g   98 (104)
T 2djt_A           46 LKDGPAQ----RCGRLEVGDLVLHINGESTQGL-THAQAVERIRA-GGPQLHLVIRRPL   98 (104)
T ss_dssp             CTTCHHH----HHCSCCTTCBEEEETTEECTTC-CHHHHHHHHHH-TCSEEEEEECCCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEECC
Confidence            4789999    999 999999999999886655 37788888877 6789999999988

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.07  E-value=1.7e-10  Score=70.55  Aligned_cols=52  Identities=21%  Similarity=0.303  Sum_probs=41.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.++..+ +....++. ++.++.++|.|++
T Consensus        42 ~~~spA~----~aGl~~GD~I~~ing~~v~~~~~~-~~~~~~~~-~g~~v~l~v~R~g   93 (97)
T 2w4f_A           42 SEEGPAA----RAGVRVGDKLLEVNGVALQGAEHH-EAVEALRG-AGTAVQMRVWRER   93 (97)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTCCHH-HHHHHHHT-SCSEEEEEEECCS
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCcCHH-HHHHHHhC-CCCeEEEEEEeCC
Confidence            4789999    999999999999999886655433 23344444 7889999999998

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.07  E-value=3e-10  Score=69.67  Aligned_cols=51  Identities=22%  Similarity=0.334  Sum_probs=43.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+++||+    +|||++||+|++|||.++.++ ++.++..+++..+ .++.|+|.|+
T Consensus        45 ~~~spA~----~aGL~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~-~~v~l~v~~~   95 (96)
T 2ego_A           45 HESSPAQ----LAGLTPGDTIASVNGLNVEGI-RHREIVDIIKASG-NVLRLETLYG   95 (96)
T ss_dssp             CTTCHHH----HTTCCTTCEEEEETTEECTTC-CHHHHHHHHHHTT-TEEEEEEECC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCC-CeEEEEEEEC
Confidence            4789999    999999999999999875443 4789999999875 4999999875

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.07  E-value=2.9e-10  Score=69.11  Aligned_cols=52  Identities=17%  Similarity=0.222  Sum_probs=43.6

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++.++ ++.++...++... .++.|+|.|++
T Consensus        41 ~~~spA~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~~~~~~-~~v~l~v~R~g   93 (94)
T 2fe5_A           41 IEGGAAQ----KDGRLQIGDRLLAVNNTNLQDV-RHEEAVASLKNTS-DMVYLKVAKPG   93 (94)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTC-BHHHHHHHHHTCC-SEEEEEEECCC
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCC-CeEEEEEEcCC
Confidence            4789999    999 999999999999886554 4678888887654 58999999987

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.07  E-value=1.1e-11  Score=79.66  Aligned_cols=63  Identities=22%  Similarity=0.250  Sum_probs=52.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEE--EEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQR--LVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~--l~v~p~   76 (96)
                      .+++||+    +|||++||+|++|||.++.+. ++.++..+++...+..+.++|.|++ +...  ++++|.
T Consensus        41 ~~~spA~----~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~~~~~~l~v~R~g-~~~~~~~~l~~~  105 (128)
T 2kjd_A           41 DPDSPAE----ASGLRAQDRIVEVNGVCMEGK-QHGDVVSAIRAGGDETKLLVVDRET-DEFFKKCRVIPS  105 (128)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTC-CHHHHHHHHHTTCSEEEEEEECHHH-HHHHHHHTCCCC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCEEEEEEEeCC-cceEEEEEEEec
Confidence            4789999    999999999999999775332 3899999999888889999999998 6655  566664

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.07  E-value=1.8e-10  Score=72.42  Aligned_cols=53  Identities=23%  Similarity=0.282  Sum_probs=45.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhC--CCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAG--VNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~--~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++.+. +|+++..+++..  .+.++.|+|.|.+
T Consensus        41 ~~~spA~----~aG~L~~GD~Il~Vng~~v~~~-~~~~~~~~l~~~~~~~~~v~l~v~R~~   96 (108)
T 3cbz_A           41 MKGGAVA----ADGRIEPGDMLLQVNDMNFENM-SNDDAVRVLRDIVHKPGPIVLTVAKSG   96 (108)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEETTSC-CHHHHHHHHHHHHTSSSCEEEEEECCC
T ss_pred             CCCChHH----hcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhcccCCCeEEEEEEeCC
Confidence            4789999    999 999999999999886554 589999999876  4457999999987

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.07  E-value=1.2e-10  Score=73.69  Aligned_cols=50  Identities=12%  Similarity=0.140  Sum_probs=42.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh--CCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA--GVNTDIPITVL   62 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~--~~g~~i~l~V~   62 (96)
                      .+||||+    +|||++||+|++|||.++ ...+|+++..+++.  +.++++.|.|-
T Consensus        47 ~~gSpA~----~AGL~~GD~I~~Ing~~v-~~~s~~dv~~~i~~~~~~g~~v~LLV~   98 (101)
T 3qik_A           47 QRGSLAE----VAGLQVGRKIYSINEDLV-FLRPFSEVESILNQSFCSRRPLRLLVA   98 (101)
T ss_dssp             CTTSHHH----HHTCCTTCBEEEETTEES-TTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEEc-CcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence            4899999    999999999999999773 23589999999997  47888888775

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.07  E-value=1.7e-10  Score=72.82  Aligned_cols=53  Identities=15%  Similarity=0.182  Sum_probs=46.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC---CceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV---NTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~---g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||++...+ +|+++.++|+...   +.++++++.|++
T Consensus        49 ~~~s~A~----~aG~l~~GD~Il~Vng~~~~~~-~~~~~~~~l~~~~~r~~~~~~l~v~R~~  105 (109)
T 1wi4_A           49 IPGGDCY----KDGRLKPGDQLVSINKESMIGV-SFEEAKSIITRAKLRSESPWEIAFIRSG  105 (109)
T ss_dssp             CTTSHHH----HHCSCCTTCBEEEETTSCCTTC-CHHHHHHHHHHSCCSSSSCEEEEEECCC
T ss_pred             CCCChHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHccccCCCceEEEEEEeCC
Confidence            4789999    999 999999999999775443 5999999999888   889999999987

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.06  E-value=1.7e-10  Score=73.21  Aligned_cols=52  Identities=8%  Similarity=0.167  Sum_probs=44.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+++||+    +|||++||+|++|||.++.. .+|+++.++++...++++.|+|.|.
T Consensus        44 ~~~spA~----~aGL~~GD~Il~InG~~v~~-~~~~d~~~~i~~~~~~~v~l~V~~~   95 (111)
T 1vae_A           44 DPHCSAS----LAGAKEGDYIVSIQGVDCKW-LTVSEVMKLLKSFGGEEVEMKVVSL   95 (111)
T ss_dssp             CTTSSHH----HHHCCTTCEEEEETTEECSS-CCHHHHHHHHHHTTTSEECEEEECE
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCC-CCHHHHHHHHHhCCCceEEEEEEec
Confidence            4789999    99999999999999977432 2899999999988888899999874

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.06  E-value=2.7e-10  Score=71.91  Aligned_cols=52  Identities=19%  Similarity=0.259  Sum_probs=44.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.++ ++.++...++. .+.++.|+|.|++
T Consensus        57 ~~~spA~----~aG~L~~GD~Il~Vng~~v~~~-~~~~~~~~l~~-~g~~v~l~v~R~~  109 (112)
T 2r4h_A           57 AEDGPAE----RSGKMRIGDEILEINGETTKNM-KHSRAIELIKN-GGRRVRLFLKRGE  109 (112)
T ss_dssp             CTTSHHH----HTTCCCTTCEEEEETTEECTTC-CHHHHHHHHHT-TTTEEEEEEECCE
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            4789999    999 999999999999886554 57788788876 5789999999987

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.06  E-value=1.6e-11  Score=90.22  Aligned_cols=60  Identities=17%  Similarity=0.351  Sum_probs=0.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .++|||+    +|||++||+|++|||++   +.+|.++..+++.  +.+++|+|+|++ +.++++++|..
T Consensus       262 ~~~spA~----~aGl~~GD~I~~ing~~---v~~~~~~~~~l~~--~~~v~l~v~R~g-~~~~~~v~p~~  321 (332)
T 3num_A          262 IPDTPAE----AGGLKENDVIISINGQS---VVSANDVSDVIKR--ESTLNMVVRRGN-EDIMITVIPEE  321 (332)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             ccCCChH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHhC--CCeEEEEEEECC-EEEEEEEEEee
Confidence            4789999    99999999999999965   5778888888875  678999999999 99999999975

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.06  E-value=1.4e-10  Score=74.29  Aligned_cols=53  Identities=11%  Similarity=0.267  Sum_probs=45.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||+++.+ .+|+++.++++... +.++.|+|+|++
T Consensus        53 ~~~spA~----~aG~L~~GD~I~~ing~~v~~-~~~~~~~~~l~~~~~g~~v~l~v~R~~  107 (122)
T 1v5q_A           53 EADSPAE----RCGVLQIGDRVMAINGIPTED-STFEEANQLLRDSSITSKVTLEIEFDV  107 (122)
T ss_dssp             CTTSHHH----HSCCCCTTCCEEEETTEESSS-SCHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCC-CCHHHHHHHHHhCCCCCeEEEEEEECC
Confidence            3789999    999 99999999999977533 24899999999876 889999999988

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.06  E-value=4.8e-10  Score=85.83  Aligned_cols=61  Identities=20%  Similarity=0.293  Sum_probs=54.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .+++||+    +|||++||+|++|||++   +.+|.++..++.. .+|.+++++|.|++ +.+++++++.
T Consensus       290 ~~~spA~----~aGL~~GDvI~~vnG~~---v~~~~~l~~~l~~~~~g~~v~l~V~R~g-~~~~~~v~l~  351 (451)
T 3pv2_A          290 NPNSPAE----LAGLKAGDIITQINDTK---ITQATQVKTTISLLRVGSTVKIIVERDN-KPLTLSAVVT  351 (451)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEE---CCSHHHHHHHHHTSCTTCEEEEEEEETT-EEEEEEEECB
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEEc
Confidence            4789999    99999999999999966   5788999998885 56899999999999 9888888775

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.05  E-value=1.5e-10  Score=73.56  Aligned_cols=52  Identities=17%  Similarity=0.234  Sum_probs=45.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++.+. +|.++..+++. .+.++.|+|+|++
T Consensus        57 ~~~s~A~----~aG~L~~GD~Il~vng~~v~~~-~~~~~~~~l~~-~~~~v~l~v~R~~  109 (117)
T 1ujd_A           57 LPGGSAE----QTGKLMEGMQVLEWNGIPLTSK-TYEEVQSIISQ-QSGEAEICVRLDL  109 (117)
T ss_dssp             CTTCHHH----HHSSCCTTCEEEEETTEECTTC-CHHHHHHHHSC-CSSCEEEEEESSC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEEcCCC-CHHHHHHHHhc-CCCEEEEEEEECC
Confidence            4789999    999 999999999999886443 57888888887 5678999999988

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.05  E-value=1.5e-10  Score=72.70  Aligned_cols=54  Identities=22%  Similarity=0.350  Sum_probs=44.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTR   68 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~   68 (96)
                      .+++||+    ++| |++||+|++|||+++.++ ++.++..+++. .+..+.|+|.|++ ..
T Consensus        46 ~~~spA~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~l~~-~g~~v~l~v~R~~-~~  100 (111)
T 2dlu_A           46 VPGGLAD----RDGRLQTGDHILKIGGTNVQGM-TSEQVAQVLRN-CGNSVRMLVARDP-AG  100 (111)
T ss_dssp             CTTSSHH----HHTCCCSSCEEEEESSCCCTTS-CHHHHHHHHHH-HCSEEEEEEEESC-TT
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHh-CCCeEEEEEEeCC-CC
Confidence            4789999    999 999999999999775433 56888888886 4678999999988 54

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.05  E-value=4.5e-10  Score=71.67  Aligned_cols=54  Identities=11%  Similarity=0.182  Sum_probs=45.7

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTR   68 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~   68 (96)
                      .+++||+    ++| |++||+|++|||.++.+. ++.++..+++...+ ++.|+|.|++ +.
T Consensus        61 ~~~spA~----~aG~L~~GD~Il~Vng~~v~~~-~~~~~~~~l~~~~~-~v~l~v~R~g-~~  115 (117)
T 2fne_A           61 FAKGAAS----EDGRLKRGDQIIAVNGQSLEGV-THEEAVAILKRTKG-TVTLMVLSSD-ET  115 (117)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHHCCS-SEEEEEEECS-CE
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCC-eEEEEEEeCC-cc
Confidence            4789999    999 999999999999886443 78899999987655 6999999988 53

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.05  E-value=3.8e-10  Score=73.52  Aligned_cols=53  Identities=17%  Similarity=0.252  Sum_probs=45.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||.++.. .+|.++.++++. .+|.++.|+|.|+-
T Consensus        57 ~~gspA~----~aG~L~~GD~Il~VnG~~v~~-~s~~d~~~~l~~~~~G~~v~l~V~R~~  111 (126)
T 1wif_A           57 INKGAAA----SDGILQPGDVLISVGHANVLG-YTLREFLKLLQNITIGTVLQIKAYRGF  111 (126)
T ss_dssp             CTTSSGG----GCSSSCTTCBEEEESSSCCTT-CCHHHHHHHHTSCCSSCEEEEEEESSS
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEEcCC-CCHHHHHHHHhcCCCCCEEEEEEEECC
Confidence            5789999    999 99999999999965321 479999999997 46899999999974

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=2.5e-10  Score=70.69  Aligned_cols=51  Identities=10%  Similarity=0.086  Sum_probs=43.6

Q ss_pred             CCCCCcccccccc-CCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQ-GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~a-GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +| ||++||+|++|||.++.++  +.++..+++.. +.++.|+|+|++
T Consensus        43 ~~~spA~----~agGL~~GD~I~~ing~~v~~~--~~~~~~~~~~~-~~~v~l~v~R~~   94 (100)
T 2edp_A           43 EDGGKAA----LSQKMRTGDELVNINGTPLYGS--RQEALILIKGS-FRILKLIVRRRN   94 (100)
T ss_dssp             CTTSHHH----HHTSCCTTCEEEEETTEECCSC--SHHHHHHHHTC-CSSCEEEEEECC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEEccch--HHHHHHHHHhC-CCeEEEEEEeCC
Confidence            4789999    99 9999999999999887553  57777888764 688999999988

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.05  E-value=3.9e-10  Score=72.86  Aligned_cols=53  Identities=9%  Similarity=0.158  Sum_probs=46.4

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.+. +|.++.++++... +.++.|+|.|+.
T Consensus        51 ~~~spA~----~aG~L~~GD~Il~vng~~v~~~-~~~~~~~~l~~~~~g~~v~l~v~R~~  105 (129)
T 2kpk_A           51 VLDGPAA----LDGKMETGDVIVSVNDTCVLGH-THAQVVKIFQSIPIGASVDLELCRGY  105 (129)
T ss_dssp             CTTSHHH----HHSSCCTTCEEEEETTEECTTS-CHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            4789999    999 999999999999886443 5889999999876 889999999987

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.04  E-value=3.1e-10  Score=71.12  Aligned_cols=53  Identities=13%  Similarity=0.128  Sum_probs=46.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++.. .+|.++..+++..++.++.|+|.|..
T Consensus        52 ~~~spA~----~aG~L~~GD~Il~Vng~~v~~-~~~~~~~~~l~~~~~~~v~l~v~R~~  105 (108)
T 2d92_A           52 VADGVAE----RSGGLLPGDRLVSVNEYCLDN-TSLAEAVEILKAVPPGLVHLGICSGP  105 (108)
T ss_dssp             CTTCHHH----HHTCCCTTCEEEEESSCBCTT-CCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCC-CCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            4789999    999 99999999999977544 36899999999987779999999964

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.04  E-value=3.7e-10  Score=73.38  Aligned_cols=53  Identities=15%  Similarity=0.232  Sum_probs=46.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++.+. ++.++..+++.. ++..+.|+|.|++
T Consensus        73 ~~gspA~----~aG~L~~GD~Il~ing~~v~~~-~~~~~~~~l~~~~~g~~v~l~v~R~g  127 (131)
T 1wfg_A           73 KKGSLAD----TVGHLRPGDEVLEWNGRLLQGA-TFEEVYNIILESKPEPQVELVVSRSG  127 (131)
T ss_dssp             CTTSHHH----HTSCCCTTCEEEEETTEECTTC-CHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence            4789999    999 999999999999886443 688999999987 6789999999976

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=5.1e-10  Score=71.70  Aligned_cols=53  Identities=11%  Similarity=0.191  Sum_probs=46.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++..+ ++.++..+++... +.++.|+|.|++
T Consensus        52 ~~~spA~----~aG~L~~GD~Il~Vng~~v~~~-~~~~~~~~l~~~~~g~~v~l~v~R~~  106 (123)
T 1ueq_A           52 IPDGPAA----QDGKMETGDVIVYINEVCVLGH-THADVVKLFQSVPIGQSVNLVLCRGY  106 (123)
T ss_dssp             CTTSHHH----HTSCCCTTCEEEEETTEECTTS-CHHHHHHHHHTSCTTCEEEEEEEESC
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            4789999    999 999999999999875443 6889999999875 889999999987

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.04  E-value=3.8e-10  Score=68.29  Aligned_cols=53  Identities=25%  Similarity=0.312  Sum_probs=43.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .++|||+    +|||++||+|++|||.++.+. ++.++...++..++..+.+.+.|++
T Consensus        35 ~~~spA~----~aGL~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~~~~~~~~~~r~~   87 (91)
T 1g9o_A           35 EPGSPAE----KAGLLAGDRLVEVNGENVEKE-THQQVVSRIRAALNAVRLLVVDPET   87 (91)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTC-CHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred             CCCCHHH----HCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCCcEEEEEEcCCc
Confidence            4789999    999999999999999886543 4788889999877777777777766

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.04  E-value=2.1e-10  Score=74.01  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=44.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.++ ++.++..++.. .++.++.|+|.|++
T Consensus        59 ~~gspA~----~aGL~~GD~Il~Vng~~v~~~-~~~~~~~~l~~~~~g~~v~l~v~R~~  112 (124)
T 3tsv_A           59 LEDSPAA----KEGLEEGDQILRVNNVDFTNI-IREEAVLFLLDLPKGEEVTILAQKKK  112 (124)
T ss_dssp             CTTCHHH----HTTCCTTEEEEEETTEECSSC-CHHHHHHHHHHSCTTCEEEEEEEECH
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            4789999    999999999999999875443 23788887775 67889999999987

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.04  E-value=5.2e-10  Score=69.32  Aligned_cols=52  Identities=15%  Similarity=0.211  Sum_probs=43.8

Q ss_pred             CCCCCccccccc-cCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVY-QGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~-aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~   64 (96)
                      .+|+||+    + +||++||+|++|||.++.. .+|+++.++|+.. .+.+++|+|.|.
T Consensus        45 ~~~spA~----~~ggl~~GD~I~~Ing~~v~~-~~~~~~~~~l~~~~~g~~v~l~v~R~   98 (101)
T 2yt7_A           45 LHGGPAE----RSGALSIGDRLTAINGTSLVG-LPLAACQAAVRETKSQTSVTLSIVHC   98 (101)
T ss_dssp             CTTSTTG----GGSSCCTTCEEEEESSCBCTT-SCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCC-CCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence            4789999    9 6799999999999966322 5899999999985 678999999884

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.03  E-value=5e-10  Score=68.59  Aligned_cols=51  Identities=12%  Similarity=0.129  Sum_probs=43.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+++||+    +|||++||+|++|||.++.. .+|.++..+++.. +.++.|+|.+.
T Consensus        39 ~~~spA~----~aGL~~GD~Il~Ing~~v~~-~~~~~~~~~l~~~-g~~v~l~v~p~   89 (90)
T 1y7n_A           39 MRGGIAE----RGGVRVGHRIIEINGQSVVA-TPHEKIVHILSNA-VGEIHMKTMPA   89 (90)
T ss_dssp             CTTSHHH----HHTCCSSCEEEEETTEECTT-SCHHHHHHHHHHC-CEEEEEEEECC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCC-CCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            4789999    99999999999999987533 4789999999864 78999998864

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.03  E-value=3.8e-10  Score=68.65  Aligned_cols=52  Identities=17%  Similarity=0.292  Sum_probs=44.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++.++ ++.++...++. .+.++.|+|.|++
T Consensus        41 ~~~s~A~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~~~~-~~~~v~l~v~r~g   93 (97)
T 2iwn_A           41 TKSSAVE----HDGRIQIGDQIIAVDGTNLQGF-TNQQAVEVLRH-TGQTVLLTLMRRG   93 (97)
T ss_dssp             CTTCHHH----HHCCCCTTCEEEEETTEECTTS-CHHHHHHHHHT-CCSEEEEEEEEEE
T ss_pred             CCCChHH----hCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            4789999    999 999999999999886554 36677777776 7789999999977

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.03  E-value=1e-09  Score=83.56  Aligned_cols=62  Identities=18%  Similarity=0.255  Sum_probs=54.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .++|||+    +|||++||+|++|||++   +.+|.++...+.. .+|.+++++|.|++ +.+++++++..
T Consensus       271 ~~~spA~----~aGL~~GD~I~~vnG~~---v~~~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~l~~  333 (436)
T 4a8c_A          271 LPGSGSA----KAGVKAGDIITSLNGKP---LNSFAELRSRIATTEPGTKVKLGLLRNG-KPLEVEVTLDT  333 (436)
T ss_pred             CCCChHH----HCCCCCCCEEEEECCEE---CCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEECC
Confidence            4789999    99999999999999966   5788899888875 45789999999999 98888888764

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.03  E-value=8e-11  Score=74.24  Aligned_cols=62  Identities=18%  Similarity=0.284  Sum_probs=48.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC-CceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN-EGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~-g~~~~~l~v~p~~   77 (96)
                      .+++||+    ++||++||+|++|||+++.++. +.++..+++..  .++.++|.|+ + +.+.+.+.+.+
T Consensus        49 ~~~s~A~----~aGL~~GD~Il~vng~~v~~~~-~~~~~~~~~~~--~~v~l~v~r~~g-~~~~~~~~~~~  111 (114)
T 1x5n_A           49 KPGSLSA----EVGLEIGDQIVEVNGVDFSNLD-HKEAVNVLKSS--RSLTISIVAAAG-RELFMTDRSGP  111 (114)
T ss_dssp             CTTSTTT----TTTCCTTCEEEEETTEETTSCC-TTHHHHHHHHC--SSEEEEECSSTT-THHHHSSCCCC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCCC-HHHHHHHHhcC--CeEEEEEEcCCC-CceEEEeccCC
Confidence            4789999    9999999999999998876664 34566777754  5899999999 7 66555555443

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.03  E-value=2.1e-10  Score=70.83  Aligned_cols=52  Identities=13%  Similarity=0.223  Sum_probs=44.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.++ ++.++...++ ..+.++.|+|.|++
T Consensus        44 ~~~spA~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~~~-~~g~~v~l~v~R~~   96 (103)
T 1wfv_A           44 AEDGPAI----RNGRMRVGDQIIEINGESTRDM-THARAIELIK-SGGRRVRLLLKRGT   96 (103)
T ss_dssp             CTTSHHH----HHCSSCTTCEEEEETTEECSSC-CHHHHHHHHH-HHCSEECEEEECTT
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHH-cCCCeEEEEEEECC
Confidence            4789999    999 999999999999886554 3778878887 45789999999988

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.03  E-value=4.8e-10  Score=69.13  Aligned_cols=52  Identities=21%  Similarity=0.231  Sum_probs=44.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.++ ++.++..+++.. +..+.|+|.|++
T Consensus        45 ~~~spA~----~aG~L~~GD~I~~vng~~v~~~-~~~~~~~~~~~~-g~~v~l~v~R~~   97 (101)
T 2jik_A           45 KENGAAA----LDGRLQEGDKILSVNGQDLKNL-LHQDAVDLFRNA-GYAVSLRVQHRL   97 (101)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECSSC-CHHHHHHHHHTC-CSEEEEEEEEES
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhC-CCeEEEEEEeCC
Confidence            4789999    999 999999999999886554 467888888764 678999999987

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=4.4e-10  Score=69.41  Aligned_cols=52  Identities=21%  Similarity=0.218  Sum_probs=44.4

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||.++.+. ++.++..+++...+ ++.|+|.|..
T Consensus        47 ~~~spA~----~aG~l~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~~-~v~l~v~r~~   99 (103)
T 2fcf_A           47 LEDSPAG----KNGTLKPGDRIVEVDGMDLRDA-SHEQAVEAIRKAGN-PVVFMVQSII   99 (103)
T ss_dssp             CSSSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHTCCS-SEEEEEECCC
T ss_pred             CCCCcHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCC-cEEEEEEECC
Confidence            4789999    999 999999999999875432 38899999998755 9999999976

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.02  E-value=3.8e-10  Score=70.33  Aligned_cols=52  Identities=27%  Similarity=0.342  Sum_probs=43.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||.++.+. +|+++.++++.. +.++.|+|.+..
T Consensus        44 ~~gspA~----~aG~L~~GD~Il~ING~~v~~~-~~~~~~~~l~~~-~~~v~L~V~~~~   96 (97)
T 2ejy_A           44 LHGGMIH----RQGSLHVGDEILEINGTNVTNH-SVDQLQKAMKET-KGMISLKVIPNQ   96 (97)
T ss_dssp             CSSSHHH----HHTCCCTTCEEEEETTBCCCSS-CSHHHHHHHHHC-CEEEEEEEECCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEECC
Confidence            4789999    999 999999999999764332 589999999986 568999988753

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=6.2e-10  Score=69.25  Aligned_cols=52  Identities=19%  Similarity=0.276  Sum_probs=44.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++.+. ++.++..+++.. +..+.|+|.|++
T Consensus        46 ~~~spA~----~aG~L~~GD~I~~vng~~v~~~-~~~~~~~~l~~~-g~~v~l~v~R~~   98 (105)
T 1wha_A           46 AEGGAAH----RAGTLQVGDRVLSINGVDVTEA-RHDHAVSLLTAA-SPTIALLLEREA   98 (105)
T ss_dssp             CTTSSHH----HHSSCCTTCEEEEESSCBCTTC-CHHHHHHHHTSC-CSCEEEEEEECC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEECC
Confidence            4789999    999 999999999999775443 388888888875 778999999976

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.02  E-value=5.4e-10  Score=69.02  Aligned_cols=54  Identities=15%  Similarity=0.238  Sum_probs=45.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTR   68 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~   68 (96)
                      .+++||+    +|| |++||+|++|||.++.+. ++.++..+++. .+.++.|+|.|++ ..
T Consensus        42 ~~~spA~----~aG~L~~GD~I~~vng~~v~~~-~~~~~~~~~~~-~g~~v~l~v~R~~-~~   96 (102)
T 2i1n_A           42 IPGGAAA----MDGRLGVNDCVLRVNEVDVSEV-VHSRAVEALKE-AGPVVRLVVRRRQ-PP   96 (102)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECSSC-CHHHHHHHHHH-SCSEEEEEEEEEC-CC
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEeCC-CC
Confidence            4789999    999 999999999999886543 47788888887 5789999999988 43

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.01  E-value=5.5e-10  Score=68.16  Aligned_cols=52  Identities=19%  Similarity=0.189  Sum_probs=43.7

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++.+. ++.++...++. .+.++.++|.|++
T Consensus        37 ~~~spA~----~aG~L~~GD~I~~vng~~v~~~-~~~~~~~~~~~-~g~~v~l~v~R~~   89 (95)
T 2vwr_A           37 LEGGLAA----QDGRLSSNDRVLAINGHDLKYG-TPELAAQIIQA-SGERVNLTIARPG   89 (95)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHH-CCSEEEEEEEEES
T ss_pred             CCCChHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCEEEEEEEcCC
Confidence            4789999    999 999999999999886554 46777777775 4789999999987

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.01  E-value=6.9e-10  Score=67.12  Aligned_cols=51  Identities=16%  Similarity=0.290  Sum_probs=40.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+++||+    +|||++||+|++|||.++.++. +.++...++. .+.++.++|.|+
T Consensus        40 ~~~spA~----~aGl~~GD~I~~vng~~v~~~~-~~~~~~~~~~-~g~~v~l~v~R~   90 (91)
T 1m5z_A           40 RPAGPGD----LGGLKPYDRLLQVNHVRTRDFD-CCLVVPLIAE-SGNKLDLVISRN   90 (91)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTCC-HHHHHHHHHT-STTEEEEEEEEC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCCC-HHHHHHHHHc-CCCEEEEEEEeC
Confidence            4789999    9999999999999998865543 4455566664 478999999996

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.01  E-value=6e-10  Score=70.24  Aligned_cols=54  Identities=24%  Similarity=0.308  Sum_probs=45.6

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTR   68 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~   68 (96)
                      .+++||+    +|| |++||+|++|||.++.++ ++.++..+++... .++.|+|.|++ ..
T Consensus        51 ~~~spA~----~aG~L~~GD~I~~vng~~v~~~-~~~~~~~~l~~~~-~~v~l~v~R~~-~~  105 (116)
T 2dm8_A           51 YEEGAAA----RDGRLWAGDQILEVNGVDLRNS-SHEEAITALRQTP-QKVRLVVYRDE-AH  105 (116)
T ss_dssp             CSSSHHH----HHTCCCTTCEEEEETTEECSSS-CHHHHHHHHHTCC-SEEEEEEECCS-SC
T ss_pred             CCCChHH----hCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCC-CeEEEEEEeCC-cc
Confidence            4789999    999 999999999999886554 3788888888655 79999999988 53

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.01  E-value=1e-09  Score=67.59  Aligned_cols=46  Identities=20%  Similarity=0.406  Sum_probs=40.7

Q ss_pred             ccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCC
Q psy12583         19 YQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNE   65 (96)
Q Consensus        19 ~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g   65 (96)
                      ++||++||+|++|||.++.++ +|.++.++|+..+ +.++.|+|.|++
T Consensus        45 ~aGL~~GD~I~~vng~~v~~~-~~~~~~~~l~~~~~g~~v~l~v~R~g   91 (96)
T 1ujv_A           45 CPGLCEGDLIVEINQQNVQNL-SHTEVVDILKDCPIGSETSLIIHRGS   91 (96)
T ss_dssp             STTCCSSCEEEEETTEECSSC-CHHHHHHHHHHSCTTSEEEEEEECCS
T ss_pred             cCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCCCCEEEEEEEECC
Confidence            799999999999999886554 5789999999875 899999999987

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.00  E-value=7.7e-10  Score=75.47  Aligned_cols=53  Identities=11%  Similarity=0.267  Sum_probs=45.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||.++.+ .+|.++..+++... +.+++++|.|++
T Consensus        44 ~~~spA~----~aG~l~~GD~I~~vng~~v~~-~~~~~~~~~l~~~~~g~~v~l~v~R~~   98 (196)
T 1p1d_A           44 EADSPAE----RCGVLQIGDRVMAINGIPTED-STFEEANQLLRDSSITSKVTLEIEFDV   98 (196)
T ss_dssp             CTTSHHH----HTSCCCSSCCEEEETTBCSTT-SCHHHHHHHHHTCCSSSEEEEEEEECS
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCC-CCHHHHHHHHHhCCCCCeEEEEEEecC
Confidence            4789999    999 99999999999976432 16899999999876 789999999988

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.00  E-value=7.5e-10  Score=68.89  Aligned_cols=52  Identities=15%  Similarity=0.215  Sum_probs=44.7

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++.+. ++.++..+++. .+.++.|+|.|++
T Consensus        46 ~~~spA~----~aG~L~~GD~I~~ing~~v~~~-~~~~~~~~~~~-~g~~v~l~v~R~~   98 (106)
T 3axa_A           46 VKGGAAD----VDGRLAAGDQLLSVDGRSLVGL-SQERAAELMTR-TSSVVTLEVAKQG   98 (106)
T ss_dssp             BTTSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHT-CCSEEEEEEECCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            4789999    999 999999999999886543 67788888876 6789999999988

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.00  E-value=5.6e-10  Score=69.44  Aligned_cols=51  Identities=12%  Similarity=0.177  Sum_probs=43.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.+. ++.++.++++.  +.++.|+|+|+.
T Consensus        49 ~~~spA~----~aGL~~GD~I~~ing~~v~~~-~~~~~~~~l~~--~~~v~l~v~r~~   99 (104)
T 1wi2_A           49 IPDSDAH----RAGLQEGDQVLAVNDVDFQDI-EHSKAVEILKT--AREISMRVRFFS   99 (104)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECSSC-CHHHHHHHHHH--SSSEEEEEECCC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHhC--CCEEEEEEEECC
Confidence            4789999    999999999999999875442 48899999987  678999999976

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.2e-09  Score=67.20  Aligned_cols=51  Identities=22%  Similarity=0.328  Sum_probs=43.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+     +||++||+|++|||.++.+. +|.++...++. .+.++.|+|.|++
T Consensus        39 ~~~spA~-----agL~~GD~Il~ing~~v~~~-~~~~~~~~~~~-~g~~v~l~v~R~~   89 (96)
T 2edv_A           39 TAGGSAH-----GKLFPGDQILQMNNEPAEDL-SWERAVDILRE-AEDSLSITVVRCT   89 (96)
T ss_dssp             CSSSSST-----TTSCTTCBEEEESSCBSTTC-CHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred             CCCCchh-----hCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEECC
Confidence            4789996     89999999999999876544 57788888887 6789999999976

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.00  E-value=3.2e-10  Score=68.53  Aligned_cols=53  Identities=15%  Similarity=0.128  Sum_probs=44.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCC-ceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVN-TDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g-~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.+ .++.++..+++..+. .++.|+|.|..
T Consensus        35 ~~~spA~----~aG~L~~GD~I~~ing~~v~~-~~~~~~~~~l~~~~~~~~v~l~v~R~~   89 (90)
T 2q9v_A           35 VPLGAAD----TDGRLRSGDELISVDGTPVIG-KSHQLVVQLMQQAAKQGHVNLTVRQTR   89 (90)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTT-SCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred             CCCChHH----HCCCCCCCCEEEEECCEECCC-CCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence            4789999    999 99999999999987544 468888888887653 48999999964

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.99  E-value=8.3e-10  Score=66.73  Aligned_cols=51  Identities=14%  Similarity=0.178  Sum_probs=42.8

Q ss_pred             CCCCCcccccccc-CCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQ-GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~a-GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+++||+    +| ||++||+|++|||.++.+. ++.++...++.. +.++.++|+|-
T Consensus        38 ~~~spA~----~aggl~~GD~I~~ing~~v~~~-~~~~~~~~~~~~-~~~v~l~v~r~   89 (90)
T 1qav_A           38 FKGLAAD----QTEALFVGDAILSVNGEDLSSA-THDEAVQALKKT-GKEVVLEVKYM   89 (90)
T ss_dssp             CTTSHHH----HTTCCCTTEEEEEETTEECTTC-CHHHHHHHHHTC-CSEEEEEEEEC
T ss_pred             CCCCHHH----hcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhC-CCeEEEEEEEe
Confidence            4789999    99 9999999999999886554 677888888765 67899999883

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.99  E-value=1.1e-09  Score=74.63  Aligned_cols=54  Identities=11%  Similarity=0.003  Sum_probs=44.8

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCc-ccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNF-KSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~-~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||+++.+| .+|.++...++...+.++.|+|.|++
T Consensus        53 ~~~spA~----~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~  108 (206)
T 3r0h_A           53 YPEGQVA----ADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRAD  108 (206)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECCS
T ss_pred             CCCChHH----hcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEecc
Confidence            4789999    998 999999999999886552 24778888888766666999999987

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.99  E-value=6.5e-10  Score=69.39  Aligned_cols=52  Identities=12%  Similarity=0.170  Sum_probs=44.8

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++.+. ++.++..+++.. +.++.|+|.|++
T Consensus        50 ~~~spA~----~aG~L~~GD~I~~vng~~v~~~-~~~~~~~~~~~~-g~~v~l~v~R~~  102 (108)
T 1q7x_A           50 IPQGAAE----SDGRIHKGDRVLAVNGVSLEGA-THKQAVETLRNT-GQVVHLLLEKGQ  102 (108)
T ss_dssp             CTTSTHH----HHTCCCSSCEEEEETTEECBSC-TTSHHHHHHHHT-TSEEEEEEECCC
T ss_pred             CCCChHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            4789999    999 999999999999886544 677888888874 789999999987

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.99  E-value=1e-09  Score=66.52  Aligned_cols=52  Identities=19%  Similarity=0.229  Sum_probs=43.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++.+. ++.++...++.. +.++.++|.|.+
T Consensus        37 ~~~spA~----~aG~L~~GD~I~~vng~~v~~~-~~~~~~~~~~~~-~~~v~l~v~R~~   89 (92)
T 2qg1_A           37 VKGGIAD----ADGRLMQGDQILMVNGEDVRNA-TQEAVAALLKCS-LGTVTLEVGRIS   89 (92)
T ss_dssp             CTTSHHH----HHTCCCTTCEEEEETTEECTTC-CHHHHHHHHHHC-CSEEEEEEECCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEccc
Confidence            4789999    999 999999999999886554 367777777764 568999999976

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.98  E-value=5.3e-10  Score=71.26  Aligned_cols=52  Identities=13%  Similarity=0.173  Sum_probs=44.7

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||.++... ++.++...++.. +..+.|+|.|++
T Consensus        62 ~~gspA~----~aG~L~~GD~Il~Vng~~v~~~-~~~~~~~~l~~~-g~~v~l~v~R~~  114 (117)
T 2byg_A           62 IDGGAAQ----KDGRLQVGDRLLMVNNYSLEEV-THEEAVAILKNT-SEVVYLKVGKPT  114 (117)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHTC-CSEEEEEEEEEE
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            4789999    999 999999999999886443 678888888865 689999999976

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=98.98  E-value=6.1e-10  Score=67.68  Aligned_cols=50  Identities=20%  Similarity=0.234  Sum_probs=42.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+|+||+    +|||++||+|++|||+++... +.+++.+.|+ +.+..++|+|..
T Consensus        31 ~~gspA~----~aGl~~GD~Il~VNG~~v~~~-~~~evv~llr-~~g~~V~L~v~p   80 (82)
T 1r6j_A           31 VKDSSAA----RNGLLTEHNICEINGQNVIGL-KDSQIADILS-TSGTVVTITIMP   80 (82)
T ss_dssp             CTTSHHH----HHTCCSSEEEEEETTEECTTC-CHHHHHHHHH-HSCSEEEEEEEE
T ss_pred             cCCCHHH----HcCCCCCCEEEEECCEEcCCC-CHHHHHHHHh-cCCCEEEEEEEe
Confidence            4799999    999999999999999986554 5788999999 567788888764

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.98  E-value=1.3e-09  Score=86.22  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeecC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQP   77 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~~   77 (96)
                      .+||||+    +|||++||+|++|||.++ +   +.++.++++. .+|.+++|+|.|+| +.+++++++..
T Consensus       504 ~~~spA~----~AGL~~GD~I~aInG~~v-~---~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~l~~  565 (597)
T 4fgm_A          504 YHDESAY----HAGLSAGDKIIAIDHLQA-T---EQSVKRILERYIPGDTVTIHAFRRD-ELMTLELTWQE  565 (597)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEEC-C---TTTHHHHHTTCCTTCEEEEEEEETT-EEEEEEEECCC
T ss_pred             CCCChHH----HCCCCCCCEEEEECCEEC-C---HHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEecC
Confidence            4789999    999999999999999875 2   4566777875 57899999999999 99999998874

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.98  E-value=6.1e-10  Score=70.69  Aligned_cols=53  Identities=13%  Similarity=0.221  Sum_probs=44.8

Q ss_pred             CCCCCcccccccc--CCCCCCEEEEECCeecCCcccHHHHHHHHHhCCC---ceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQ--GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVN---TDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~a--GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g---~~i~l~V~R~g   65 (96)
                      .+++||+    +|  ||++||+|++|||.++.+. ++.++..+++...+   .++.|+|.|+.
T Consensus        49 ~~~spA~----~a~gGL~~GD~Il~ing~~v~~~-~~~~~~~~~~~~~~~~~~~v~l~v~R~~  106 (119)
T 2cs5_A           49 APGTPAD----LCVPRLNEGDQVVLINGRDIAEH-THDQVVLFIKASCERHSGELMLLVRPNA  106 (119)
T ss_dssp             CSSSTTT----SSSSCCCTTCEEEEETTBCTTSS-CHHHHHHHHHHHHHCCSSCEEEEEECCC
T ss_pred             CCCCHHH----HhhcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhccccCCCEEEEEEEccc
Confidence            4789999    99  9999999999999876554 67888888887543   58999999987

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.97  E-value=8.7e-10  Score=67.10  Aligned_cols=52  Identities=15%  Similarity=0.224  Sum_probs=44.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||.++.. .+|.++..+++...+ ++.|+|.|..
T Consensus        36 ~~gspA~----~aG~L~~GD~I~~ing~~v~~-~~~~~~~~~l~~~~~-~v~l~v~~~~   88 (93)
T 3o46_A           36 MRGGAAD----RSGLIHVGDELREVNGIPVED-KRPEEIIQILAQSQG-AITFKIIPGS   88 (93)
T ss_dssp             CTTSHHH----HHTCCCTTCEEEEETTEESTT-SCHHHHHHHHHHCCE-EEEEEEECC-
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCC-CCHHHHHHHHHhCCC-eEEEEEEeCC
Confidence            4789999    999 99999999999987533 578999999998765 8999999865

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.96  E-value=1.9e-10  Score=73.03  Aligned_cols=57  Identities=14%  Similarity=0.126  Sum_probs=48.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQR   70 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~   70 (96)
                      .+++||+    +|| |++||+|++|||+++... +|.++..+++..++..+.+++.|++ +...
T Consensus        50 ~~~spA~----~aG~L~~GD~Il~ing~~v~~~-~~~~~~~~l~~~~~~~~~l~v~R~~-~~~~  107 (119)
T 1x6d_A           50 FPNGLAS----QEGTIQKGNEVLSINGKSLKGT-THHDALAILRQAREPRQAVIVTRKL-TPEA  107 (119)
T ss_dssp             CSSSHHH----HHTSSCTTCBCCEETTEECSSC-CHHHHHHHHHHTTSSSEEEEEEECC-CSSS
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCeEEEEEEcCC-Cccc
Confidence            4789999    999 999999999999886433 6889999999888888889999988 5443

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.96  E-value=5.4e-09  Score=70.77  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=49.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe---CCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR---NEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R---~g~~~~~l~v~p~   76 (96)
                      .+|+||+    + ||++||+|++|||.++.+.. +.++...++... ..+.|+|.|   ++ +...+.+...
T Consensus        32 ~~~spA~----~-gl~~GD~I~~vng~~v~~~~-~~~~~~~~~~~~-~~v~l~v~r~~~~G-~~~~~~v~~~   95 (195)
T 2qbw_A           32 QPEGPAS----K-LLQPGDKIIQANGYSFINIE-HGQAVSLLKTFQ-NTVELIIVREVGNG-AKQEIRVRVE   95 (195)
T ss_dssp             CTTSTTT----T-TCCTTCEEEEETTEECTTCC-HHHHHHHHHHCC-SEEEEEEEEECSSS-CEEEEEEEEE
T ss_pred             CCCChHH----h-CCCCCCEEEEECCEECCCCC-HHHHHHHHHcCC-CeEEEEEEEcCCCC-CCceeEeEee
Confidence            4789999    9 99999999999998876654 677777787765 499999999   88 7777666554

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.95  E-value=7.8e-10  Score=71.40  Aligned_cols=53  Identities=19%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhC------CCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAG------VNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~------~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||+.+... +|.++.++|+..      ++.+|+|+|.|++
T Consensus        63 ~~gspA~----~aG~L~~GD~Il~Vng~~v~~~-~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~  122 (127)
T 1wg6_A           63 IHGGAAF----KDGRLRMNDQLIAVNGETLLGK-SNHEAMETLRRSMSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             CSSSSTH----HHHTSCSCCBEEEETTEESTTS-CHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHHhhccccCCCCEEEEEEEeCC
Confidence            5789999    999 999999999999886553 588888999864      4679999999987

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=7.7e-10  Score=70.35  Aligned_cols=52  Identities=15%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||+++.. .+++++.++++. .+..+.|+|.|++
T Consensus        50 ~~~spA~----~aG~l~~GD~Il~Ing~~v~~-~~~~~~~~~l~~-~g~~v~l~v~r~~  102 (117)
T 1v62_A           50 KPASVVD----RSGALHPGDHILSIDGTSMEH-CSLLEATKLLAS-ISEKVRLEILPVP  102 (117)
T ss_dssp             CTTSHHH----HHTCCCTTCBEEEETTEETTS-CCHHHHHHHHHS-CSSEEEEEECCBT
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCC-CCHHHHHHHHHh-CCCeEEEEEEECC
Confidence            4789999    999 99999999999987533 478999999994 6889999999988

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.94  E-value=1.4e-09  Score=69.59  Aligned_cols=52  Identities=12%  Similarity=0.153  Sum_probs=43.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||.++... +|.++..+++...+ .+.++|.|..
T Consensus        53 ~~gspA~----~aG~L~~GD~Il~ing~~v~~~-~~~~~~~~l~~~~~-~v~l~v~r~~  105 (125)
T 3hpk_A           53 FDNTPAA----LDGTVAAGDEITGVNGRSIKGK-TKVEVAKMIQEVKG-EVTIHYNKLQ  105 (125)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHHSCS-EEEEEEEEEC
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCC-eEEEEEEECC
Confidence            4789999    999 999999999999885443 68899999998765 5999999843

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=1.1e-09  Score=66.38  Aligned_cols=52  Identities=13%  Similarity=0.185  Sum_probs=43.7

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.++ ++.++..+++... .++.|+|.|+.
T Consensus        38 ~~~spA~----~aGgl~~GD~I~~vng~~v~~~-~~~~~~~~~~~~~-~~v~l~v~r~~   90 (93)
T 2dkr_A           38 IPGGVAD----RHGGLKRGDQLLSVNGVSVEGE-QHEKAVELLKAAQ-GSVKLVVRSGP   90 (93)
T ss_dssp             CTTSHHH----HHCCCCTTCBEEEETTEECTTS-CHHHHHHHHHHCC-SEEEEEECCCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCC-CcEEEEEEeCC
Confidence            4789999    996 999999999999886554 6788888888764 58999999975

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.94  E-value=2.5e-09  Score=80.08  Aligned_cols=63  Identities=17%  Similarity=0.311  Sum_probs=53.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCce---EEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGT---RQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~---~~~l~v~p~   76 (96)
                      .+|+||+    +|||++||+|++|||.++.++ ..+++...++..+|.+++++|.|++ +   .+++++++.
T Consensus       107 ~~~spA~----~aGl~~GD~I~~Ing~~v~~~-~~~~~~~~l~~~~g~~v~l~v~r~g-~~~~~~~~~l~r~  172 (388)
T 1fc6_A          107 APGGPAE----KAGARAGDVIVTVDGTAVKGM-SLYDVSDLLQGEADSQVEVVLHAPG-APSNTRTLQLTRQ  172 (388)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTC-CHHHHHHHHCBSTTCEEEEEEEETT-EEEEEEEEEEECB
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHhcCCCCEEEEEEEeCC-CCcceEEEEEEEc
Confidence            4789999    999999999999999876443 2477888888888999999999999 7   788888765

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.94  E-value=9e-10  Score=67.00  Aligned_cols=52  Identities=19%  Similarity=0.387  Sum_probs=41.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|||++||+|++|||.++.++ ++.++..+++... ..+.+.+.|.+
T Consensus        37 ~~~spA~----~aGl~~GD~I~~ing~~v~~~-~~~~~~~~l~~~~-~~~~~~~~r~~   88 (95)
T 3r68_A           37 EPGSPAE----AAGLKNNDLVVAVNGKSVEAL-DHDGVVEMIRKGG-DQTTLLVLDKE   88 (95)
T ss_dssp             CTTSHHH----HHTCCTTEEEEEETTEECTTC-CHHHHHHHHHTTT-TEEEEEEEECC
T ss_pred             CCCCHHH----HCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCC-CeEEEEEECCc
Confidence            5789999    999999999999999875443 3488999999854 45666666655

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.94  E-value=1.4e-09  Score=69.83  Aligned_cols=53  Identities=17%  Similarity=0.170  Sum_probs=45.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++....++.++..+++. .+..+.|+|.|+.
T Consensus        62 ~~~spA~----~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~~  115 (128)
T 2db5_A           62 QPGSVAD----RDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSLRLIVAREP  115 (128)
T ss_dssp             CTTSHHH----HTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEECC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcCC
Confidence            4789999    999 999999999999775312388999999988 5689999999987

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.94  E-value=8e-10  Score=71.04  Aligned_cols=56  Identities=20%  Similarity=0.344  Sum_probs=47.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQR   70 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~   70 (96)
                      .+++||+    +|| |++||+|++|||+++.+. ++.++..+++. .+..+.|+|.|++ +..+
T Consensus        54 ~~~spA~----~aG~L~~GD~I~~vng~~v~~~-~~~~~~~~l~~-~~~~v~l~v~R~~-~~~~  110 (129)
T 2dmz_A           54 IPGSAAY----HNGHIQVNDKIVAVDGVNIQGF-ANHDVVEVLRN-AGQVVHLTLVRRK-TSSS  110 (129)
T ss_dssp             CTTSHHH----HHTCCCSSCBEEEETTBCCTTC-CHHHHHHHHHH-CCSSEEEEEEEES-SSSS
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEeCC-cccc
Confidence            4789999    999 999999999999765332 38899999998 7889999999988 5433

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.94  E-value=4.3e-10  Score=70.30  Aligned_cols=53  Identities=19%  Similarity=0.194  Sum_probs=45.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhC----CCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAG----VNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~----~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||++... .+|+++.++|+..    .+.++++.|.|.+
T Consensus        40 ~~~s~A~----~aG~L~~GD~Il~Vng~~v~~-~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~   97 (103)
T 1ufx_A           40 QRGGSAH----NCGQLKVGHVILEVNGLTLRG-KEHREAARIIAEAFKTKDRDYIDFLVTEFN   97 (103)
T ss_dssp             CTTSHHH----HHCSSCTTCBCCEETTEECTT-CBHHHHHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred             CCCChHH----HCCCCCCCCEEEEECCEECCC-CCHHHHHHHHHHhcccCCCCeEEEEEEEcc
Confidence            3889999    999 99999999999988544 3689999999875    6789999999976

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.94  E-value=2.7e-09  Score=65.05  Aligned_cols=51  Identities=14%  Similarity=0.158  Sum_probs=42.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    + ||++||+|++|||.++.+. ++.++..+++. .+.++.|+|.|+.
T Consensus        43 ~~~spA~----~-gL~~GD~I~~vng~~v~~~-~~~~~~~~~~~-~~~~v~l~v~R~~   93 (95)
T 1mfg_A           43 QPEGPAS----K-LLQPGDKIIQANGYSFINI-EHGQAVSLLKT-FQNTVELIIVREV   93 (95)
T ss_dssp             CTTSTTT----T-TCCTTCEEEEETTEECTTC-BHHHHHHHHHH-CCSEEEEEEEEEC
T ss_pred             CCCCchh----h-CCCCCCEEEEECCEEcCCC-CHHHHHHHhhc-CCCeEEEEEEeCC
Confidence            4789999    8 9999999999999886554 46777777774 5789999999965

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.94  E-value=1.4e-09  Score=70.04  Aligned_cols=52  Identities=21%  Similarity=0.218  Sum_probs=44.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||.++.+. ++.++.++++...+ ++.|+|.|..
T Consensus        67 ~~~spA~----~aG~L~~GD~Il~Vng~~v~~~-~~~~~~~~l~~~~~-~v~l~v~r~~  119 (123)
T 2iwq_A           67 LEDSPAG----KNGTLKPGDRIVEVDGMDLRDA-SHEQAVEAIRKAGN-PVVFMVQSII  119 (123)
T ss_dssp             CSSSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHHCCS-SEEEEEECCC
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCC-eEEEEEEECC
Confidence            4789999    999 999999999999875442 48899999988754 9999999976

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.93  E-value=4e-10  Score=71.38  Aligned_cols=57  Identities=23%  Similarity=0.209  Sum_probs=43.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHH-HhCCCceEEEEEEeCCceEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTV-RAGVNTDIPITVLRNEGTRQRLV   72 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i-~~~~g~~i~l~V~R~g~~~~~l~   72 (96)
                      .+++||+    +|||++||+|++|||+++.++..+   ..++ ....+.++.|+|.|++ +.+++.
T Consensus        50 ~~~spA~----~aGL~~GD~Il~vng~~v~~~~~~---~~~~~~~~~g~~v~l~v~r~~-~~~~~~  107 (117)
T 1uit_A           50 TVGSIAH----QAGLEYGDQLLEFNGINLRSATEQ---QARLIIGQQCDTITILAQYNP-HVHQLS  107 (117)
T ss_dssp             CTTSHHH----HHTCCTTCEECEETTEETTTCCHH---HHHHHTTSCCSEEEEEECCCS-CCCCCC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCCCHH---HHHHHHHcCCCeEEEEEEECC-chhhhh
Confidence            4789999    999999999999999886554433   3333 2356789999999998 665543

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.93  E-value=1.1e-09  Score=69.79  Aligned_cols=53  Identities=19%  Similarity=0.253  Sum_probs=43.7

Q ss_pred             CCCCCcccccccc-CCCCCCEEEEECCeecCCcccHHHHHHHHHhC---CCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQ-GLVKDDIILEFGPINSSNFKSLQDIASTVRAG---VNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~a-GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~---~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +| ||++||+|++|||.++..+ +|+++.+.++..   .+.+++|+|.|..
T Consensus        51 ~~gspA~----~aggL~~GD~Il~Ing~~v~~~-~~~~~~~~l~~~~~~~g~~v~l~v~r~~  107 (118)
T 1v6b_A           51 YEGGAAE----RHGGVVKGDEIMAINGKIVTDY-TLAEAEAALQKAWNQGGDWIDLVVAVCP  107 (118)
T ss_dssp             CTTSHHH----HHCSSCTTCEEEEESSCBCTTC-BHHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHHhhhcCCCeEEEEEEeCC
Confidence            5789999    99 9999999999999775443 588888888754   4789999999953

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.93  E-value=1.3e-09  Score=67.80  Aligned_cols=52  Identities=13%  Similarity=0.211  Sum_probs=42.8

Q ss_pred             CCCCCccccccccC--CCCCCEEEEECCeecCCcccHHHHHHHHHhCC---CceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQG--LVKDDIILEFGPINSSNFKSLQDIASTVRAGV---NTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aG--Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~---g~~i~l~V~R~   64 (96)
                      .+|+||+    ++|  |++||+|++|||.++.++ ++.++...++...   +..+.|+|.|+
T Consensus        51 ~~~spA~----~aG~rL~~GD~Il~ing~~v~~~-~~~~~~~~i~~~~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           51 APGTPAD----LCVPRLNEGDQVVLINGRDIAEH-THDQVVLFIKASCERHSGELMLLVRPN  107 (107)
T ss_dssp             CTTSHHH----HSSSCCCTTCEEEEETTEECTTC-CHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred             CCCCchH----HcCCccCCCCEEEEECCEECCCC-CHHHHHHHHHhccccCCcEEEEEEEcC
Confidence            5789999    999  999999999999886554 4577788887654   35899999885

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.93  E-value=1.4e-09  Score=68.66  Aligned_cols=52  Identities=13%  Similarity=0.218  Sum_probs=44.7

Q ss_pred             CCCCCccccccccCC-CCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGL-VKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGL-k~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +||| ++||+|++|||.++..+ +|.++..+++... .++.|+|.|++
T Consensus        56 ~~~spA~----~aGll~~GD~I~~vng~~v~~~-~~~~~~~~l~~~~-~~v~l~v~r~~  108 (113)
T 1va8_A           56 VKGGAAE----KSGLLHEGDEVLEINGIEIRGK-DVNEVFDLLSDMH-GTLTFVLIPSS  108 (113)
T ss_dssp             CTTSHHH----HHTCCCTTCEEEEETTEECTTC-CHHHHHHHHHHCC-EEEEEEEECCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCC-CeEEEEEEECC
Confidence            4789999    9999 99999999999886443 6889999998765 58999999988

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=1.5e-09  Score=67.68  Aligned_cols=52  Identities=21%  Similarity=0.294  Sum_probs=44.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++.+. ++.++..+++.. +.++.|+|.|++
T Consensus        48 ~~~spA~----~aG~L~~GD~I~~vng~~v~~~-~~~~~~~~~~~~-~~~v~l~v~R~~  100 (107)
T 1wf8_A           48 TEGGAAQ----RDGRIQVNDQIVEVDGISLVGV-TQNFAATVLRNT-KGNVRFVIGREK  100 (107)
T ss_dssp             CTTCHHH----HHCSSCTTCBEEEETTEECBSC-CHHHHHHHHHHC-CSEEEEEEEEEC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHhcC-CCeEEEEEEeCC
Confidence            4789999    999 999999999999886543 577777888774 689999999976

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.92  E-value=1.3e-09  Score=73.31  Aligned_cols=56  Identities=16%  Similarity=0.224  Sum_probs=46.6

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQR   70 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~   70 (96)
                      .+|+||+    ++| |++||+|++|||+++.+ .+|.++..+++. .++++.|+|.|++ +...
T Consensus       138 ~~gs~A~----~aG~L~~GD~Il~Vng~~v~~-~~~~~~~~~l~~-~~~~v~l~v~R~~-~~~~  194 (196)
T 3gsl_A          138 IEGGAAH----KDGRLQIGDKILAVNSVGLED-VMHEDAVAALKN-TYDVVYLKVAKPS-NAET  194 (196)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECSS-CBHHHHHHHHHS-CCEEEEEEEEEES-CCCE
T ss_pred             CCCChHH----hcCCCCCCCEEEEECCCcCCC-CCHHHHHHHHHc-CCCeEEEEEeCCC-Cccc
Confidence            4789999    999 99999999999987544 249999999976 4789999999988 5443

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.92  E-value=1.7e-09  Score=73.94  Aligned_cols=51  Identities=18%  Similarity=0.237  Sum_probs=44.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++||++||+|++|||.++.++ +|.++..+++.  +..+.|+|.|++
T Consensus       118 ~~gspA~----~aGL~~GD~Il~vng~~v~~~-~~~~~~~~l~~--~~~v~l~v~r~g  168 (192)
T 3k1r_A          118 IKGGQAD----SVGLQVGDEIVRINGYSISSC-THEEVINLIRT--EKTVSIKVRHIG  168 (192)
T ss_dssp             CTTSHHH----HTTCCTTEEEEEETTEECTTC-CHHHHHHHHTS--SSEEEEEEEECC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHcC--CCeEEEEEEECC
Confidence            4789999    999999999999999875433 48899998887  789999999999

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=2.5e-09  Score=66.63  Aligned_cols=52  Identities=21%  Similarity=0.296  Sum_probs=43.7

Q ss_pred             CCCCCcccccccc-CCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQ-GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~a-GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++ ||++||+|++|||+++.+ .++.++..+++. .+.++.|+|.|.+
T Consensus        49 ~~~spA~----~aggL~~GD~Il~vng~~v~~-~~~~~~~~~~~~-~~~~v~l~v~R~~  101 (107)
T 1uhp_A           49 VDSGPAA----KEGGLQIHDRIIEVNGRDLSR-ATHDQAVEAFKT-AKEPIVVQVLRRT  101 (107)
T ss_dssp             CSSSHHH----HTTCCCSSCEEEEETTEECTT-CCHHHHHHHHHH-CCSSEEEEEEECC
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCC-CCHHHHHHHHHc-CCCcEEEEEEeCC
Confidence            4789999    99 999999999999988644 357788888886 4678999999976

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=4.7e-10  Score=72.14  Aligned_cols=52  Identities=19%  Similarity=0.362  Sum_probs=45.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.. .++.++.++++.. +.++.|+|.|++
T Consensus        69 ~~~spA~----~aGL~~GD~I~~ing~~v~~-~~~~~~~~~l~~~-g~~v~l~v~r~~  120 (126)
T 2yuy_A           69 KEGGPAF----EAGLCTGDRIIKVNGESVIG-KTYSQVIALIQNS-DTTLELSVMPKD  120 (126)
T ss_dssp             CSSSHHH----HHTCCSSCCCCEETTEECSS-CCHHHHHHHHHTC-TTEEEEECCCCC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCC-CCHHHHHHHHHcC-CCEEEEEEEECC
Confidence            4689999    99999999999999987533 2788999999875 789999999987

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.92  E-value=1.8e-09  Score=67.58  Aligned_cols=52  Identities=19%  Similarity=0.295  Sum_probs=42.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.++ +..++..+++.. +..+.|+|.|..
T Consensus        53 ~~~spA~----~aGl~~GD~I~~vng~~v~~~-~~~~~~~~l~~~-~~~v~l~v~~~~  104 (109)
T 1q3o_A           53 DEGGVAW----RAGLRMGDFLIEVNGQNVVKV-GHRQVVNMIRQG-GNTLMVKVVMVT  104 (109)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTC-CHHHHHHHHHHT-TTEEEEEEEEEE
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhC-CCEEEEEEEECC
Confidence            4789999    999999999999999875443 238888888875 678999988854

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.91  E-value=3.5e-09  Score=68.83  Aligned_cols=52  Identities=17%  Similarity=0.232  Sum_probs=44.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|||++||+|++|||.++..+ ++.++...++. .+..+.|+|.|..
T Consensus        73 ~~gspA~----~aGL~~GD~Il~Vng~~v~~~-~~~~~~~~l~~-~g~~v~l~v~~~~  124 (132)
T 3l4f_D           73 DEGGVAW----RAGLRMGDFLIEVNGQNVVKV-GHRQVVNMIRQ-GGNTLMVKVVMVT  124 (132)
T ss_dssp             CTTSGGG----GGTCCTTCEEEEESSSBCTTS-CHHHHHHHHHH-TTTEEEEEEECCC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCEEEEEEEECC
Confidence            4789999    999999999999999775443 57888888887 5679999999976

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=1.3e-09  Score=69.61  Aligned_cols=50  Identities=16%  Similarity=0.129  Sum_probs=41.8

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++.++ +|.++.++++.   .++.|+|+|..
T Consensus        52 ~~~spA~----~aGL~~GD~Il~Ing~~v~~~-~~~~~~~~l~~---~~v~l~v~R~p  101 (114)
T 2d8i_A           52 KETGLAS----KKGLKAGDEILEINNRAADAL-NSSMLKDFLSQ---PSLGLLVRTYP  101 (114)
T ss_dssp             CTTSSHH----HHTCCTTCCEEEESSCBGGGC-CHHHHHHHHTS---SEEEEEEEECC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCc-CHHHHHHHHhC---CcEEEEEEECC
Confidence            4789999    999999999999999775443 37888888874   38999999965

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.91  E-value=2.1e-09  Score=66.94  Aligned_cols=48  Identities=17%  Similarity=0.148  Sum_probs=39.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+++||+    +|||++||+|++|||+++.++ +|+++.+++++   ++++++|+.
T Consensus        43 ~~~spA~----~aGL~~GD~Il~vng~~v~~~-~~~~l~~~l~~---~~l~ltV~~   90 (94)
T 3kzd_A           43 KETGLAS----KKGLKAGDEILEINNRAADAL-NSSMLKDFLSQ---PSLGLLVRT   90 (94)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEEGGGC-CHHHHHHHHHS---SEEEEEEEE
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHhC---CeEEEEEEe
Confidence            4789999    999999999999999886543 68999998873   467777653

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.91  E-value=3.9e-09  Score=65.29  Aligned_cols=51  Identities=14%  Similarity=0.158  Sum_probs=42.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    + ||++||+|++|||.++.+. ++.++...++. .+.++.|+|.|+.
T Consensus        51 ~~~spA~----~-gL~~GD~I~~vng~~v~~~-~~~~~~~~~~~-~g~~v~l~v~R~~  101 (103)
T 1n7t_A           51 QPEGPAS----K-LLQPGDKIIQANGYSFINI-EHGQAVSLLKT-FQNTVELIIVREV  101 (103)
T ss_dssp             SSSSTTS----S-SCCTTCEEEEETTEECSSC-CHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred             CCCCchH----H-CCCCCCEEEEECCEECCCC-CHHHHHHHhhc-CCCeEEEEEEecC
Confidence            4789999    8 9999999999999886554 46777777774 5789999999974

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.91  E-value=2.3e-09  Score=69.11  Aligned_cols=52  Identities=31%  Similarity=0.346  Sum_probs=44.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||.++.. .++.++..+++... ..+.|+|.|++
T Consensus        73 ~~~spA~----~aG~L~~GD~Il~vng~~v~~-~~~~~~~~~l~~~~-~~v~l~v~r~~  125 (128)
T 1nf3_C           73 VPGGLAQ----STGLLAVNDEVLEVNGIEVSG-KSLDQVTDMMIANS-RNLIITVRPAN  125 (128)
T ss_dssp             CTTCHHH----HHTCCCTTCEEEEETTEESTT-CCHHHHHHHHHHTT-TSEEEEEECCC
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCC-CCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            4789999    999 99999999999987543 47889999998654 57999999987

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.91  E-value=1.8e-09  Score=64.73  Aligned_cols=50  Identities=20%  Similarity=0.298  Sum_probs=41.3

Q ss_pred             CCCCCccccccc-cCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVY-QGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~-aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+|+||+    + +||++||+|++|||.+..+. +|.++...++.. +.++.|+|++
T Consensus        36 ~~gspA~----~~agl~~GD~I~~vng~~v~~~-~~~~~~~~~~~~-~~~v~l~v~~   86 (87)
T 4e34_A           36 HPGQPAD----RCGGLHVGDAILAVNGVNLRDT-KHKEAVTILSQQ-RGEIEFEVVY   86 (87)
T ss_dssp             CTTSHHH----HHSCCCTTEEEEEETTEECTTC-CHHHHHHHHHHC-CSEEEEEEEE
T ss_pred             CCCCHHH----hcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEE
Confidence            5789999    9 79999999999999886554 678888888864 5578888764

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=1.8e-09  Score=68.70  Aligned_cols=52  Identities=21%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++.++ .+.++..+++.. +..+.|+|.|++
T Consensus        55 ~~~spA~----~aG~L~~GD~Il~vng~~v~~~-~~~~~~~~~~~~-g~~v~l~v~R~~  107 (120)
T 2eno_A           55 KENGAAA----LDGRLQEGDKILSVNGQDLKNL-LHQDAVDLFRNA-GYAVSLRVQHRL  107 (120)
T ss_dssp             CSSSHHH----HSCCSCTTCEEEEETTEECCSC-CHHHHHHHHHHH-CSEEEEEEEEEE
T ss_pred             CCCChHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            4789999    999 999999999999887655 367888888764 678999999987

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.89  E-value=3e-09  Score=66.15  Aligned_cols=52  Identities=19%  Similarity=0.258  Sum_probs=44.5

Q ss_pred             CCCCCcccccccc-CCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQ-GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~a-GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++ ||++||+|++|||.++.+. +|.++..+++...+ .++|++.|..
T Consensus        43 ~~~s~A~----~a~gL~~GD~Il~Ing~~v~~~-~~~~~~~~l~~~~~-~v~l~v~~~~   95 (103)
T 2dc2_A           43 HPGQPAD----RCGGLHVGDAILAVNGVNLRDT-KHKEAVTILSQQRG-EIEFEVVYVA   95 (103)
T ss_dssp             CTTSHHH----HHTCCCSSEEEEEETTEESTTS-CHHHHHHHHHHCCS-EEEEEEEECC
T ss_pred             CCCCHHH----HhCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCC-cEEEEEEecC
Confidence            4789999    95 9999999999999886554 68899999998654 8999999976

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.89  E-value=2.7e-09  Score=81.68  Aligned_cols=57  Identities=18%  Similarity=0.274  Sum_probs=50.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVL   73 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v   73 (96)
                      .++|||+    ++||++||+|++|||++   +.+|+++.++++. .++.+.|+|+|++ +.+.+.+
T Consensus       394 ~~gspA~----~aGL~~GD~I~~Vng~~---v~~~~~~~~~l~~-~~~~v~l~v~R~g-~~~~v~l  450 (451)
T 3pv2_A          394 SENSAGW----RAGIRPGDIIISANKKP---VTDVKSLQTIAQE-KKKELLVQVLRGP-GSMYLLV  450 (451)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEE---CCSHHHHHHHTTS-SCSCEEEEEEETT-EEEEEEE
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHhc-CCCeEEEEEEECC-EEEEEEe
Confidence            4789999    99999999999999966   5788999999987 5689999999999 8877765

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.89  E-value=2.8e-09  Score=65.74  Aligned_cols=52  Identities=23%  Similarity=0.300  Sum_probs=42.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|| |++||+|++|||.++.++ ++.++...++. .+.++.++|.|++
T Consensus        43 ~~~spA~----~aG~l~~GD~I~~vng~~v~~~-~~~~~~~~~~~-~~~~v~l~v~r~~   95 (104)
T 3i4w_A           43 LAGGPAD----LSGELRKGDQILSVNGVDLRNA-SHEQAAIALKN-AGQTVTIIAQYKP   95 (104)
T ss_dssp             CTTSHHH----HHCCCCTTEEEEEETTEECTTC-CHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred             CCCChHH----hcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEECc
Confidence            4789999    999 999999999999886554 56666677766 5679999999975

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=1.8e-09  Score=65.87  Aligned_cols=51  Identities=20%  Similarity=0.176  Sum_probs=43.4

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++  ..+|+++.++++.. +.++.|+|.|..
T Consensus        37 ~~~spA~----~ag~L~~GD~I~~ing~~v--~~~~~~~~~~l~~~-~~~v~l~v~~~~   88 (91)
T 2e7k_A           37 LHGGMVA----QQGLLHVGDIIKEVNGQPV--GSDPRALQELLRNA-SGSVILKILSGP   88 (91)
T ss_dssp             CSSSHHH----HHCCCCTTCEEEEETTEEC--TTCHHHHHHHHHTC-CSSBCEEEECCS
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEEC--CCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence            4789999    987 999999999999775  26899999999875 568999998864

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.89  E-value=2.3e-09  Score=68.56  Aligned_cols=61  Identities=18%  Similarity=0.264  Sum_probs=47.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEE-EEEEee
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQ-RLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~-~l~v~p   75 (96)
                      .+|+||+    +|| |++||+|++|||+++.+. ++.++..+++... .++.|+|.|++ +.. .+.++|
T Consensus        59 ~~~spA~----~aG~L~~GD~Il~Ing~~v~~~-~~~~~~~~~~~~~-~~v~l~v~R~~-~~~~~~~~~P  121 (124)
T 2daz_A           59 NPEGPAA----ADGRMRIGDELLEINNQILYGR-SHQNASAIIKTAP-SKVKLVFIRNE-DAVNQMASGP  121 (124)
T ss_dssp             CTTSHHH----HHTCCCTTCEECEESSCBCTTS-CHHHHHHHHHHSC-SEEEEEEEECT-THHHHBCCCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCC-CeEEEEEEeCC-CcccccccCC
Confidence            4789999    999 999999999999775443 5777778887764 59999999988 542 344444

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.89  E-value=4.5e-10  Score=69.35  Aligned_cols=51  Identities=14%  Similarity=0.183  Sum_probs=38.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||+++.++.. .++...+  ..+.++.|+|.|++
T Consensus        43 ~~~spA~----~aGL~~GD~I~~ing~~v~~~~~-~~~~~~~--~~~~~v~l~v~R~g   93 (101)
T 1uez_A           43 EPGSLAE----KEGLRVGDQILRVNDKSLARVTH-AEAVKAL--KGSKKLVLSVYSAG   93 (101)
T ss_dssp             CTTSHHH----HHTCCSSCCEEEETTEECSSCCH-HHHHHHS--SSSSSCCEEECCCC
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCcCH-HHHHHhh--cCCCeEEEEEEECC
Confidence            4789999    99999999999999988655433 2222222  34568999999988

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.88  E-value=2e-09  Score=73.41  Aligned_cols=55  Identities=13%  Similarity=0.189  Sum_probs=46.6

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQ   69 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~   69 (96)
                      .+++||+    ++| |++||+|++|||.++... +|.++.++++. .+.++.|+|+|++ +.+
T Consensus       143 ~~~s~A~----~aG~l~~GD~I~~ing~~v~~~-~~~~~~~~l~~-~~~~v~l~v~R~~-~~~  198 (200)
T 2qt5_A          143 RPGGPAD----REGTIKPGDRLLSVDGIRLLGT-THAEAMSILKQ-CGQEATLLIEYDV-SVM  198 (200)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHT-TCSEEEEEEEEEE-EC-
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEECC-ccC
Confidence            4789999    999 999999999999774321 79999999998 7889999999987 543

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.88  E-value=8.4e-10  Score=84.41  Aligned_cols=61  Identities=16%  Similarity=0.251  Sum_probs=51.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .+++||+    +|||++||+|++|||.+   +.+|.++..++.. .+|.+++++|.|++ +.+++++++.
T Consensus       294 ~~gspA~----~AGL~~GDvI~~inG~~---v~~~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~~~  355 (448)
T 1ky9_A          294 LPNSSAA----KAGIKAGDVITSLNGKP---ISSFAALRAQVGTMPVGSKLTLGLLRDG-KQVNVNLELQ  355 (448)
T ss_dssp             TTCSSST----TTTCCTTCEECBSSSSB---CCSSHHHHHHTTSSBTTCCCEEEEESSS-CEEECCCC--
T ss_pred             ccCCHHH----HcCCCCCCEEEEECCEE---cCCHHHHHHHHHhcCCCCEEEEEEEECC-EEEEEEEEEe
Confidence            4789999    99999999999999855   6788899888876 46889999999999 8888877764

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.88  E-value=3e-09  Score=68.09  Aligned_cols=52  Identities=15%  Similarity=0.264  Sum_probs=43.7

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||.++... ++.++..+++.. +..+.|+|.|..
T Consensus        61 ~~gspA~----~aG~L~~GD~Il~VNg~~v~~~-~~~~~~~~l~~~-~~~v~L~v~R~~  113 (118)
T 3b76_A           61 EPGGVIS----RDGRIKTGDILLNVDGVELTEV-SRSEAVALLKRT-SSSIVLKALEVK  113 (118)
T ss_dssp             CTTSHHH----HHCSSCTTCEEEEETTEEGGGS-CHHHHHHHHHSC-CSEEEEEEEEEE
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEECC
Confidence            4789999    999 999999999999875433 788999999875 567999999854

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.88  E-value=4.1e-09  Score=66.64  Aligned_cols=52  Identities=19%  Similarity=0.220  Sum_probs=43.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++.+. ++.++..+++. .+.++.|+|.|..
T Consensus        58 ~~~spA~----~aG~L~~GD~Il~vng~~v~~~-~~~~~~~~~~~-~g~~v~l~v~r~~  110 (117)
T 2ehr_A           58 LEDSPAG----KTNALKTGDKILEVSGVDLQNA-SHSEAVEAIKN-AGNPVVFIVQSLS  110 (117)
T ss_dssp             CSSSTTT----SSCSCCTTCEEEEESSCBCTTC-CHHHHHHHHHT-SCSSEEEEECCBS
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEECC
Confidence            4789999    999 999999999999876554 47788888876 5789999999876

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.7e-09  Score=67.11  Aligned_cols=52  Identities=15%  Similarity=0.257  Sum_probs=43.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +|||++||+|++|||.++..+ ++.++...++.. +.++.++|.|.+
T Consensus        40 ~~~spA~----~aGl~~GD~I~~vng~~v~~~-~~~~~~~~~~~~-~~~v~l~v~r~~   91 (106)
T 2eei_A           40 TPQGVAM----RAGVLADDHLIEVNGENVEDA-SHEEVVEKVKKS-GSRVMFLLVDKE   91 (106)
T ss_dssp             CTTSHHH----HHTCCSSEEEEEETTEECTTC-CHHHHHHHHHHH-CSEEEEEECCTT
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhC-CCeEEEEEEcCc
Confidence            4789999    999999999999999886543 577888888764 578999999977

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.87  E-value=3.4e-09  Score=64.23  Aligned_cols=52  Identities=25%  Similarity=0.317  Sum_probs=42.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||.+... .+|+++.++++...+ .+.|++.+..
T Consensus        29 ~~gspA~----~aG~L~~GD~Il~ing~~v~~-~~~~~~~~~i~~~~~-~v~L~v~~~~   81 (88)
T 3e17_A           29 TRTGLAT----KDGNLHEGDIILKINGTVTEN-MSLTDARKLIEKSRG-KLQLVVLRDL   81 (88)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTT-CCHHHHHHHHHHTTT-EEEEEECCC-
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCC-CCHHHHHHHHHcCCC-eEEEEEeCCC
Confidence            4789999    999 99999999999987543 478999999998765 7888877643

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.87  E-value=4.5e-09  Score=64.49  Aligned_cols=52  Identities=19%  Similarity=0.266  Sum_probs=41.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||.++.+. .+.+....++.. +.++.|+|.|..
T Consensus        39 ~~~spA~----~aG~L~~GD~I~~Ing~~v~~~-~~~~~~~~~~~~-~~~v~l~v~R~~   91 (96)
T 2qkv_A           39 IQGQYPE----IDSKLQRGDIITKFNGDALEGL-PFQVSYALFKGA-NGKVSMEVTRPK   91 (96)
T ss_dssp             CTTSCHH----HHHHCCTTCEEEEETTEECTTC-CHHHHHHHHHTC-SSEEEEEEECCC
T ss_pred             CCCChHH----hcCCCCCCCEEEEECCEECCCC-CHHHHHHHHhcC-CCcEEEEEEeCC
Confidence            4789999    999 999999999999886553 355666666654 457999999964

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.87  E-value=7.3e-09  Score=66.43  Aligned_cols=53  Identities=26%  Similarity=0.367  Sum_probs=43.4

Q ss_pred             CccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCCceEEE
Q psy12583         12 PRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNEGTRQR   70 (96)
Q Consensus        12 pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g~~~~~   70 (96)
                      ||.    .|||++||+|++|||.++.++ ++.++.++|+..+ |.++.|+|.|++ ....
T Consensus        44 ~~~----~aGL~~GD~Il~VNG~~v~~~-~h~evv~~lk~~~~G~~v~L~V~R~g-~~~p   97 (113)
T 3soe_A           44 SQW----CQGLQKGDIIKEIYHQNVQNL-THLQVVEVLKQFPVGADVPLLILRGG-PPSP   97 (113)
T ss_dssp             GGG----STTCCTTCEEEEETTEECTTS-CHHHHHHHHHHSCTTCEEEEEEEESS-CC--
T ss_pred             hHH----hCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCCCCEEEEEEEECC-ccCc
Confidence            566    899999999999999886554 6789999999764 789999999998 5433

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.86  E-value=8.6e-09  Score=64.02  Aligned_cols=51  Identities=16%  Similarity=0.244  Sum_probs=38.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+     +||++||+|++|||.++.++.....+ ..+ ..++.++.++|.|++
T Consensus        47 ~~~spA~-----agl~~GD~I~~vng~~v~~~~~~~~~-~~~-~~~g~~v~l~v~R~~   97 (107)
T 2h2b_A           47 LKGGPAE-----GQLQENDRVAMVNGVSMDNVEHAFAV-QQL-RKSGKNAKITIRRKK   97 (107)
T ss_dssp             CTTSTTB-----TTBCTTCEEEEETTEECTTCCHHHHH-HHH-HTCCSEEEEEEEEES
T ss_pred             CCCCchh-----hCCCCCCEEEEECCEECCCccHHHHH-HHh-hCCCCEEEEEEEECC
Confidence            4688997     79999999999999886555433322 122 256789999999988

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=98.85  E-value=5e-09  Score=71.10  Aligned_cols=51  Identities=18%  Similarity=0.263  Sum_probs=44.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+|+||+    ++| |++||+|++|||..+... ++.++..+++. .+..+.|+|.|+
T Consensus       119 ~~gspA~----~aG~L~~GD~Il~VNG~~v~~~-~~~~~~~~l~~-~g~~v~L~V~R~  170 (170)
T 3egg_C          119 TEGGAAH----RDGRIQVNDLLVEVDGTSLVGV-TQSFAASVLRN-TKGRVRFMIGRE  170 (170)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTB-CHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred             CCCChHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCEEEEEEEeC
Confidence            4789999    999 999999999999886554 67888899988 567999999995

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.85  E-value=4.1e-09  Score=66.87  Aligned_cols=51  Identities=14%  Similarity=0.187  Sum_probs=42.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+|+||+    +|| |++||+|++|||.++.. .+|.++.++++...+ .+.++|++-
T Consensus        58 ~~gspA~----~aG~L~~GD~I~~Ing~~v~~-~~~~~~~~~l~~~~~-~v~l~v~~~  109 (114)
T 2gzv_A           58 FDNTPAA----LDGTVAAGDEITGVNGRSIKG-KTKVEVAKMIQEVKG-EVTIHYNKL  109 (114)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTT-CCHHHHHHHHHHCCS-EEEEEEECC
T ss_pred             CCCChHH----HCCCCCCCCEEEEECCEECCC-CCHHHHHHHHHcCCC-eEEEEEEec
Confidence            4789999    999 99999999999977432 678999999987665 588888764

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.84  E-value=6.8e-09  Score=65.16  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=41.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||+++.+. .+.+....++. .+.++.++|.|..
T Consensus        33 ~~gspA~----~aG~L~~GD~Il~Ing~~v~~~-~~~~~~~~~~~-~~~~v~l~v~R~~   85 (106)
T 2la8_A           33 IQGQYPE----IDSKLQRGDIITKFNGDALEGL-PFQVCYALFKG-ANGKVSMEVTRPK   85 (106)
T ss_dssp             CTTSCHH----HHTTCCTTCEEEEESSCBCSSS-CHHHHHHHHHS-CBSCEEEEEEECC
T ss_pred             CCCCHHH----HCCCCCCCCEEEEECCEECCCC-CHHHHHHHHhC-CCCeEEEEEEeCC
Confidence            4789999    999 999999999999876543 35566666665 4467999999965

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.84  E-value=7.6e-09  Score=70.48  Aligned_cols=52  Identities=21%  Similarity=0.220  Sum_probs=41.7

Q ss_pred             CCCCCcccccccc-CCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQ-GLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~a-GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +| ||++||+|++|||+++.++. ..++..+++. .+.++.|+|.|++
T Consensus        41 ~~~spA~----~aggl~~GD~I~~vng~~v~~~~-~~~~~~~~~~-~g~~v~l~v~R~~   93 (200)
T 2qt5_A           41 RQGGIAA----RSDQLDVGDYIKAVNGINLAKFR-HDEIISLLKN-VGERVVLEVEYEL   93 (200)
T ss_dssp             CTTSHHH----HTTSCCTTCEEEEETTEECTTSC-HHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred             CCCChHH----hcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh-CCCeEEEEEeccC
Confidence            4789999    99 99999999999998754432 2777777765 4679999999965

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.83  E-value=4.7e-09  Score=70.45  Aligned_cols=52  Identities=15%  Similarity=0.236  Sum_probs=40.7

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||+++.++. +.+....++. .+..+.++|.|++
T Consensus        43 ~~~spA~----~aG~l~~GD~I~~vng~~v~~~~-~~~~~~~~~~-~g~~v~l~v~r~~   95 (196)
T 3gsl_A           43 IPGGAAA----QDGRLRVNDSILFVNEVDVREVT-HSAAVEALKE-AGSIVRLYVMRRK   95 (196)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTCC-HHHHHHHHHT-SCSEEEEEEEEEC
T ss_pred             CCCChHH----hcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh-CCCcEEEEEEecC
Confidence            5889999    999 9999999999998865543 3344444544 5789999999976

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.83  E-value=4.9e-09  Score=71.43  Aligned_cols=52  Identities=17%  Similarity=0.279  Sum_probs=45.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||.++.+ .+|.++.++++.+ +.++.|+|+|++
T Consensus       143 ~~~s~A~----~aG~l~~GD~I~~vng~~v~~-~~~~~~~~~l~~~-~~~v~l~v~R~~  195 (196)
T 1p1d_A          143 KKGSVAH----RTGTLELGDKLLAIDNIRLDS-CSMEDAVQILQQC-EDLVKLKIRKDE  195 (196)
T ss_dssp             CSSSHHH----HTSCCCTTCEEEEETTEEGGG-CCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred             CCCCcHH----hcCCCCCCCEEEEECCEECCC-CCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence            4789999    999 99999999999977433 2399999999987 889999999986

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.81  E-value=8.1e-10  Score=69.33  Aligned_cols=52  Identities=15%  Similarity=0.109  Sum_probs=44.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++.+. +|.++..+++. .+.++.|+|.|+.
T Consensus        52 ~~~spA~----~aG~L~~GD~Il~vng~~v~~~-~~~~~~~~l~~-~g~~v~l~v~r~~  104 (111)
T 1uju_A           52 SPTGAAG----RDGRLRVGLRLLEVNQQSLLGL-THGEAVQLLRS-VGDTLTVLVCDGF  104 (111)
T ss_dssp             CTTSHHH----HHSSCCTTCBCCBBSSCBCTTS-CHHHHHHHHSS-CSSEEEECCCCCC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEECC
Confidence            4789999    999 999999999999775443 78888888876 5789999999976

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.77  E-value=1.3e-08  Score=63.59  Aligned_cols=52  Identities=21%  Similarity=0.310  Sum_probs=42.4

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++.++. +.++...++. .+..+.|+|.|++
T Consensus        47 ~~~s~A~----~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~~~~-~~~~v~l~v~r~~   99 (113)
T 1um7_A           47 LAGGPAD----LSGELRRGDRILSVNGVNLRNAT-HEQAAAALKR-AGQSVTIVAQYRP   99 (113)
T ss_dssp             CSSSHHH----HTTCCCTTCEEEEESSCBCTTCC-HHHHHHHHHS-CCSEEEEEEECCH
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCCC-HHHHHHHHHh-CCCcEEEEEEECc
Confidence            3789999    999 9999999999998765543 4677777764 5789999999976

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.76  E-value=8.3e-09  Score=77.87  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=46.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|||++||+|++|||.++.+. +++++..+++. .+|.+++|+|.|++
T Consensus        39 ~~gspA~----~aGL~~GD~Il~VnG~~v~~~-~~~e~~~~l~~~~~g~~v~l~v~r~~   92 (391)
T 3tsz_A           39 LEDSPAA----KEGLEEGDQILRVNNVDFTNI-IREEAVLFLLDLPKGEEVTILAQKKK   92 (391)
T ss_dssp             CTTCHHH----HTTCCTTEEEEEETTEECTTC-CHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence            5799999    999999999999999886443 68999999987 68899999999976

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.76  E-value=4.2e-09  Score=65.32  Aligned_cols=48  Identities=19%  Similarity=0.421  Sum_probs=40.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITV   61 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V   61 (96)
                      .+++||+    ++||++||+|++|||.++..+ ++.++.++++..++ ++.|+|
T Consensus        56 ~~~spA~----~aGl~~GD~I~~vng~~v~~~-~~~~~~~~l~~~~~-~v~l~v  103 (104)
T 2z17_A           56 QEDSPAH----CAGLQAGDVLANINGVSTEGF-TYKQVVDLIRSSGN-LLTIET  103 (104)
T ss_dssp             CTTSHHH----HHTCCTTCBCCEETTEECTTC-CHHHHHHHHHHTTT-EEEEEC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEEcCCC-CHHHHHHHHHhCCC-cEEEEE
Confidence            4789999    999999999999999875332 78999999998865 777765

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.75  E-value=1.1e-08  Score=64.68  Aligned_cols=51  Identities=16%  Similarity=0.094  Sum_probs=42.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+     +||++||+|++|||+++.+. ++.++..+++. .+.++.|+|.|.+
T Consensus        54 ~~~spA~-----~gL~~GD~I~~Vng~~v~~~-~~~~~~~~l~~-~~~~v~l~v~R~~  104 (117)
T 2csj_A           54 LPGGPAD-----GLLQENDRVVMVNGTPMEDV-LHSFAVQQLRK-SGKIAAIVVKRPR  104 (117)
T ss_dssp             CTTSSHH-----HHBCTTCEEEEESSCBCBTC-CHHHHHHHHHH-SCSEEEEEEEEEE
T ss_pred             CCCCccc-----ccCCCCCEEEEECCEECCCc-CHHHHHHHHhc-CCCeEEEEEEECC
Confidence            4688886     89999999999999776443 46777788887 5789999999976

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.71  E-value=6.5e-09  Score=78.17  Aligned_cols=74  Identities=12%  Similarity=0.176  Sum_probs=45.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEeecCCCCeeeEE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVG   85 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~p~~~~~~~~lG   85 (96)
                      .+|+||+    +|| |++||+|++|||.++.++. ..++..+++.. .+.++.|+|.|++ ...++.+....  ..+.||
T Consensus       240 ~~gspA~----~aG~L~~GD~Il~VnG~~v~~~~-~~~~~~~l~~~~~~~~v~l~v~r~~-~~~~v~l~~~~--~~~~lG  311 (388)
T 3suz_A          240 MNGGPAA----RSGKLSIGDQIMSINGTSLVGLP-LATCQGIIKGLKNQTQVKLNIVSCP-PVTTVLIKRPD--LKYQLG  311 (388)
T ss_dssp             CCSSHHH----HTCCCCTTCEEEEETTEECSSCC-STTHHHHTTTCTTCSCEEEEEEECC-SCC----------------
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEEccCCC-HHHHHHHHHhccCCCcccccccccc-ccceeeEeecC--CCCccc
Confidence            5789999    999 9999999999998754442 15667778776 5568999999998 76666653221  234467


Q ss_pred             EEEe
Q psy12583         86 CYFL   89 (96)
Q Consensus        86 i~~~   89 (96)
                      +.+.
T Consensus       312 ~~i~  315 (388)
T 3suz_A          312 FSVQ  315 (388)
T ss_dssp             ----
T ss_pred             eEEe
Confidence            6554

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.68  E-value=2.6e-08  Score=62.94  Aligned_cols=52  Identities=21%  Similarity=0.297  Sum_probs=40.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|| |++||+|++|||.++.++.. .+....++. .+.++.++|.|++
T Consensus        46 ~~~spA~----~aG~L~~GD~I~~vng~~v~~~~~-~~~~~~~~~-~~~~v~l~v~r~~   98 (119)
T 1tp5_A           46 LAGGPAD----LSGELRKGDQILSVNGVDLRNASH-EQAAIALKN-AGQTVTIIAQYKP   98 (119)
T ss_dssp             CTTSHHH----HHSCCCTTEEEEEETTEECTTCCH-HHHHHHHHT-SCSEEEEEEEECH
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCCCH-HHHHHHHHc-CCCeEEEEEEECC
Confidence            4789999    999 99999999999988655532 333344443 5789999999976

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.68  E-value=3.5e-08  Score=67.18  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=43.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||+++.++ ++.++..+++. .+.++.|+|.|..
T Consensus       144 ~~gs~A~----~aG~L~~GD~Il~VNg~~v~~~-~~~~~~~~l~~-~~~~v~L~V~R~~  196 (206)
T 3r0h_A          144 IQGQYPE----IDSKLQRGDIITKFNGDALEGL-PFQVCYALFKG-ANGKVSMEVTRPK  196 (206)
T ss_dssp             CTTSCHH----HHHHCCTTCEEEEETTEECTTC-CHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            4789999    999 999999999999886554 45778888876 4568999999955

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.67  E-value=4.4e-10  Score=78.99  Aligned_cols=62  Identities=23%  Similarity=0.317  Sum_probs=50.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceE-EEEEEeCCceEE--EEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDI-PITVLRNEGTRQ--RLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i-~l~V~R~g~~~~--~l~v~p~   76 (96)
                      .+|+||+    ++||++||+|++|||+++... +|.++..+++.. +..+ .++|.|++ +.+  .+.++|.
T Consensus        41 ~~gSpA~----~aGL~~GD~Il~VNG~~V~~~-s~~dl~~~l~~~-g~~v~~l~V~R~g-~~~~~~v~v~p~  105 (216)
T 2krg_A           41 DPDSPAE----ASGLRAQDRIVEVNGVCMEGK-QHGDVVSAIRAG-GDETKLLVVDRET-DEFFKKCRVIPS  105 (216)
T ss_dssp             CTTSHHH----HHTCCTTCBCCEETTEECTTC-CTHHHHHHHHHH-CSEEEEEECCHHH-HHHHHHHTCCCC
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhc-CCeEEEEEEEECC-EEEEEEEEEEEe
Confidence            4789999    999999999999999875322 788999999876 7788 99999988 665  5555554

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.61  E-value=1.2e-08  Score=77.35  Aligned_cols=49  Identities=14%  Similarity=0.180  Sum_probs=41.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+||||+    +|||++||+|++|||.++   .+|+ +..+++. ++.+++|++.|++
T Consensus        98 ~~gsPA~----~AGL~~GD~I~~InG~~v---~~~~-~~~~l~~-~g~~v~l~v~R~g  146 (403)
T 3k50_A           98 VPGSPAE----EAGLQRGHWIMMMNGDYI---TKKV-ESELLQG-STRQLQIGVYKEV  146 (403)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTBCB---CTTT-GGGGTSC-SCEEEEEEEEEEE
T ss_pred             CCCChHH----HcCCCCCCEEEEECCEEc---cchh-HHHHhhC-CCCEEEEEEEeCC
Confidence            5899999    999999999999999764   4443 5677777 8899999999987

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.60  E-value=5.1e-09  Score=80.09  Aligned_cols=57  Identities=18%  Similarity=0.358  Sum_probs=0.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVL   73 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v   73 (96)
                      .++|||+    ++||++||+|++|||.+   +.+|.++.++++.+++ .+.|+|.|++ +.+.+.+
T Consensus       391 ~~gspA~----~aGL~~GDiI~~vng~~---v~~~~~l~~~l~~~~~-~v~l~v~R~g-~~~~~~l  447 (448)
T 1ky9_A          391 KTGTPAA----QIGLKKGDVIIGANQQA---VKNIAELRKVLDSKPS-VLALNIQRGD-STIYLLM  447 (448)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             cCCCHHH----HcCCCCCCEEEEECCEE---CCCHHHHHHHHHcCCC-eEEEEEEECC-EEEEEEe
Confidence            4689999    99999999999999965   5678888899987665 8999999999 7766654

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.60  E-value=4e-08  Score=70.97  Aligned_cols=52  Identities=13%  Similarity=0.193  Sum_probs=44.6

Q ss_pred             CCCCCccccccc-cCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVY-QGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~-aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    + +||++||+|++|||+++.+. ++.++..+++.. +..+.|+|+|.+
T Consensus       111 ~~gspA~----~~aGL~~GD~Il~VNG~~v~~~-t~~e~v~~l~~~-g~~V~L~V~R~~  163 (263)
T 1z87_A          111 FKGLAAD----QTEALFVGDAILSVNGEDLSSA-THDEAVQALKKT-GKEVVLEVKYMK  163 (263)
T ss_dssp             CTTSHHH----HCTTCCSSCEEEEESSCBCTTS-CHHHHHHHHHHC-CSCCCEEEECCS
T ss_pred             CCCCHHH----HhCCCCCCCEEEEECCEECCCc-CHHHHHHHHhcC-CCeEEEEEEeCc
Confidence            4799999    9 79999999999999876554 578888999886 678999999977

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=98.02  E-value=5.5e-09  Score=66.25  Aligned_cols=49  Identities=20%  Similarity=0.316  Sum_probs=37.8

Q ss_pred             CCCCCccccccc-cCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVY-QGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVL   62 (96)
Q Consensus         8 ~~~~pa~~~~~~-aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~   62 (96)
                      .+|+||+    + +||++||+|++|||.++.+ .++.++..+++... ..++|+|.
T Consensus        61 ~~~spA~----~~aGL~~GD~Il~ING~~v~~-~~~~~~~~~l~~~~-~~v~l~V~  110 (112)
T 2lob_A           61 HPGQPAD----RCGGLHVGDAILAVNGVNLRD-TKHKEAVTILSQQR-GEIEFEVV  110 (112)
Confidence            4789999    9 9999999999999977533 36778888887644 34777664

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.57  E-value=9e-08  Score=77.80  Aligned_cols=61  Identities=15%  Similarity=0.126  Sum_probs=50.1

Q ss_pred             CCCCCccccccccC--CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQG--LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aG--Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .+++||+    +||  |+ ||+|++|||.++..   +.++...++...|.+++|+|.|++.+.++++++|.
T Consensus       764 ~~~spa~----~ag~~l~-GD~I~~i~g~~~~~---~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~~~~~  826 (1045)
T 1k32_A          764 GEKSPIF----EYGIDPT-GYLIEDIDGETVGA---GSNIYRVLSEKAGTSARIRLSGKGGDKRDLMIDIL  826 (1045)
T ss_dssp             TCBCGGG----GGTCCCT-TCEEEEETTEECBT---TBCHHHHHHTTTTSEEEEEEECSSSCEEEEEEECB
T ss_pred             cCCChHH----HCCCCcC-CCEEEEECCEEccc---hhhHHHhhcCCCCCEEEEEEECCCCceEEEEEEEc
Confidence            3569999    999  99 99999999987544   44677889998999999999998734667778763

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.56  E-value=6.6e-08  Score=74.72  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=45.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +|||++||+|++|||+++.+. +++++..+|+.. +|.+++|+|.|++
T Consensus        31 ~~gspA~----~aGL~~GD~Il~VNG~~v~~~-t~~e~~~~L~~~~~g~~v~L~V~r~g   84 (468)
T 3shw_A           31 LEDSPAA----KEGLEEGDQILRVNNVDFTNI-IREEAVLFLLDLPKGEEVTILAQKKK   84 (468)
T ss_dssp             CSSSHHH----HTTCCTTEEEEEETTEECTTC-CHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            4899999    999999999999999875443 588999999874 6789999999976

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=98.40  E-value=1.2e-06  Score=68.71  Aligned_cols=63  Identities=10%  Similarity=0.086  Sum_probs=48.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCccc-------HHHHHHHHH-hCCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKS-------LQDIASTVR-AGVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~-------~~di~~~i~-~~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .+++||+    ++ |++||.|++|||..+.+..+       ..++..++. ..+|..++|+|.|+| +.++++++..
T Consensus       285 ~~~spA~----~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~G-k~~~v~Vtl~  355 (539)
T 4fln_A          285 EPTSDAS----KV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAG-EHKKVQVVLR  355 (539)
T ss_dssp             CTTSGGG----GT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETT-EEEEEEEECB
T ss_pred             cCCChHH----hC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECC-EEEEEEEEEc
Confidence            4789999    76 99999999999988654321       112344554 457899999999999 8888888764

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.38  E-value=1.9e-08  Score=66.91  Aligned_cols=50  Identities=16%  Similarity=0.201  Sum_probs=36.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p   75 (96)
                      .+++||+    ++||++||+|++|||.++.++             .++++.++++|++ +.+.+.++|
T Consensus       115 ~~~s~a~----~aGl~~GD~I~~ing~~v~~~-------------~~~~v~~~v~r~g-~~~~l~v~~  164 (166)
T 1w9e_A          115 VKDSSAA----RNGLLTEHNICEINGQNVIGL-------------KDSQIADILSTSG-TVVTITIMP  164 (166)
T ss_dssp             CTTSHHH----HTTCCSSEEEEEETTEECTTC-------------CHHHHHHHHHHSC-SEEEEEEEE
T ss_pred             ccCCHHH----HcCCCCCCEEEEECCEECCCC-------------ChHHHHHHHhhCC-CEEEEEEEE
Confidence            4789999    999999999999999876444             2334445556666 666666665

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.23  E-value=2.1e-06  Score=68.79  Aligned_cols=54  Identities=17%  Similarity=0.227  Sum_probs=44.4

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTR   68 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~   68 (96)
                      .+|+||+    ++| |++||+|++|||.++.++. +.++...++.. +..+.|+|.|++ ..
T Consensus       192 ~~gs~A~----~aG~L~~GD~Il~Vng~~v~~~~-~~~~~~~l~~~-~~~v~l~V~R~g-~~  246 (721)
T 2xkx_A          192 IEGGAAH----KDGRLQIGDKILAVNSVGLEDVM-HEDAVAALKNT-YDVVYLKVAKPS-NA  246 (721)
T ss_pred             CCCCchh----hcCCCCCCCEEEEECCeeCCCCC-HHHHHHHHHcC-CCeEEEEEEeCC-cc
Confidence            4789999    999 9999999999998865543 57777777654 679999999988 54

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.15  E-value=3.6e-06  Score=67.49  Aligned_cols=52  Identities=23%  Similarity=0.302  Sum_probs=44.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||.++.+. +++++..+++.. +..+.|.|.|+.
T Consensus       339 ~~gs~A~----~aG~L~~GD~Il~VNg~~v~~~-~~~e~~~~l~~~-~~~v~L~v~r~~  391 (721)
T 2xkx_A          339 LAGGPAD----LSGELRKGDQILSVNGVDLRNA-SHEQAAIALKNA-GQTVTIIAQYKP  391 (721)
T ss_pred             CCCChHH----hcCCCccCCEEEEECCEECCCC-CHHHHHHHHHhc-CCeEEEEEEeCc
Confidence            4789999    999 999999999999876443 588999999875 568999999875

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=98.10  E-value=9.1e-06  Score=50.55  Aligned_cols=53  Identities=11%  Similarity=0.100  Sum_probs=40.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g   65 (96)
                      .+|+||+    +.| |++||.|++|||+.+..+ +-.++.+++++.+ |.+++|++.+..
T Consensus        36 ~~gg~a~----r~g~L~vGD~I~~VNG~~v~g~-~h~evv~lLk~~~~g~~~~L~lv~p~   90 (95)
T 3gge_A           36 KDGGVID----SVKTICVGDHIESINGENIVGW-RHYDVAKKLKELKKEELFTMKLIEPK   90 (95)
T ss_dssp             CTTSHHH----HCTTCCTTCEEEEETTEECTTC-CHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             cCCChHH----hcCCCCCCCEEEEECCEEccCC-CHHHHHHHHHhCCCCCEEEEEEECcc
Confidence            4678888    777 999999999999887665 4468889999865 467777766543

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=97.89  E-value=1.6e-06  Score=65.04  Aligned_cols=52  Identities=12%  Similarity=0.126  Sum_probs=0.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++||++||+|++|||.++.+. +++++.+.++.. +..+.++|.+..
T Consensus       323 ~~gs~A~----~aGL~~GD~Il~VNg~~v~~~-s~~~~~~~l~~~-~~~v~L~V~p~~  374 (388)
T 3suz_A          323 MRGGIAE----RGGVRVGHRIIEINGQSVVAT-AHEKIVQALSNS-VGEIHMKTMPAA  374 (388)
T ss_dssp             ----------------------------------------------------------
T ss_pred             ecCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHhC-CCeEEEEEEecc
Confidence            4789999    999999999999999765332 567777888764 456777776644

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.18  E-value=0.00061  Score=53.45  Aligned_cols=47  Identities=9%  Similarity=0.104  Sum_probs=40.1

Q ss_pred             CCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEE
Q psy12583          9 EGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVL   62 (96)
Q Consensus         9 ~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~   62 (96)
                      ++++|.    .+|+++||.|++|||++   +.+..++.+++++..++-+.|+..
T Consensus       424 ~~s~a~----~~g~~~gdiI~~vNg~~---V~s~~~l~~~l~~~k~~~l~~~~~  470 (539)
T 4fln_A          424 ANEVNI----GYEDMNNQQVLKFNGIP---IRNIHHLAHLIDMCKDKYLVFEFE  470 (539)
T ss_dssp             CCGGGT----TCSSCCSEEEEEETTEE---CCSHHHHHHHHHTCCSSEEEEEET
T ss_pred             CCchhh----hcCCCCCCEEEeECCEE---cCCHHHHHHHHHHcCCCeEEEEEC
Confidence            567788    89999999999999976   678889999999988887777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	96
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	99.55
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.53
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.44
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.41
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	99.4
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	99.4
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.38
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.34
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	99.33
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.1
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.07
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.06
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.02
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.0
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	98.99
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	98.98
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	98.98
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	98.96
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	98.94
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.93
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	98.92
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	98.9
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	98.89
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	98.88
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	98.87
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	98.84
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.84
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.83
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.83
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.82
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	98.81
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.79
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	98.79
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	98.78
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	98.78
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.76
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	98.76
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	98.75
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	98.75
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.74
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	98.74
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	98.74
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.71
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	98.7
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.69
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	98.69
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.68
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	98.67
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	98.67
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.65
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	98.65
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	98.65
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.65
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	98.64
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	98.63
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.61
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.6
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.6
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.56
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	98.56
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.54
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.54
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.53
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.52
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.5
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.49
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	98.48
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.31

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.55  E-value=3.3e-15  Score=92.93  Aligned_cols=73  Identities=16%  Similarity=0.156  Sum_probs=61.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEEeecCCCCeeeEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVLRPQPFEGQGLVGC   86 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v~p~~~~~~~~lGi   86 (96)
                      .+||||+    ++ |++||+|++|||.+   +.+|.++..+|+.+ +|+.++|+|+|++ ..+++...|.. .+.+++|+
T Consensus        11 ~~~sPA~----~~-L~~GD~I~~ing~~---v~~~~~l~~~i~~~~~G~~v~l~v~R~~-~~~~l~~~p~~-~~~~~iGi   80 (103)
T d2hgaa1          11 VPGSPAS----KV-LTPGLVIESINGMP---TSNLTTYSAALKTISVGEVINITTDQGT-FHLKTGRNPNN-SSRAYMGI   80 (103)
T ss_dssp             CSSSGGG----GT-SCTTCEEEEETTEE---CSSHHHHHHHHTTCCTTCEEEEEETTEE-EEEECCBCSSS-CCSCBCCE
T ss_pred             CCCChHH----hc-CCCCCEEEEECCEE---cCCHHHHHHHHhhCCCCCEEEEEEEECC-EEEEEEeccCC-CCceEEEE
Confidence            5799999    75 99999999999966   58899999999875 6999999999998 77777666653 56788999


Q ss_pred             EEec
Q psy12583         87 YFLN   90 (96)
Q Consensus        87 ~~~~   90 (96)
                      .+..
T Consensus        81 ~~~~   84 (103)
T d2hgaa1          81 RTSN   84 (103)
T ss_dssp             EEEC
T ss_pred             Eecc
Confidence            8763

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.2e-14  Score=89.18  Aligned_cols=59  Identities=24%  Similarity=0.442  Sum_probs=53.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .++|||+    +|||++||.|++|||.+   +.+|+++.++++  +|.++.++|+|+| +.++++++|+
T Consensus        39 ~~~spA~----~aGl~~GDiI~~ing~~---V~s~~dl~~~l~--~g~~v~l~v~R~g-~~~~~~v~pe   97 (100)
T d1lcya1          39 ILGSPAH----RAGLRPGDVILAIGEQM---VQNAEDVYEAVR--TQSQLAVQIRRGR-ETLTLYVTPE   97 (100)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEE---CCSHHHHHHHHT--TCSSEEEEEEETT-EEEEEEECCE
T ss_pred             CCCchHh----hcCCCCCcEEEEECCEE---cCCHHHHHHHhc--CCCEEEEEEEECC-EEEEEEEEee
Confidence            5789999    99999999999999976   578899999885  5789999999999 9999999986

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=5.1e-13  Score=80.35  Aligned_cols=60  Identities=12%  Similarity=0.181  Sum_probs=51.0

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEe-CCceEEEEEEee
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLR-NEGTRQRLVLRP   75 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R-~g~~~~~l~v~p   75 (96)
                      .+||||+    +|||++||.|++|||.+   +.++.++..++.. .+|..++|+|.| ++ +.++++++.
T Consensus        24 ~~~spA~----~aGl~~GD~I~~ing~~---i~~~~~~~~~i~~~~~g~~v~l~v~r~~g-~~~~v~vtL   85 (88)
T d2z9ia1          24 VAGGAAA----NAGVPKGVVVTKVDDRP---INSADALVAAVRSKAPGATVALTFQDPSG-GSRTVQVTL   85 (88)
T ss_dssp             CTTSTTG----GGTCCTTCEEEEETTEE---CCSHHHHHHHHHTSCTTCEEEEEEEETTT-EEEEEEEEC
T ss_pred             CCCCHHH----HcCCCCCCEEEEeCCCc---CCcHHHHHHHHHhCCCCCEEEEEEEECCC-CEEEEEEEE
Confidence            5799999    99999999999999976   5778888888865 468899999999 57 777777764

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.41  E-value=4.2e-13  Score=81.52  Aligned_cols=53  Identities=15%  Similarity=0.307  Sum_probs=47.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+||||+    +|||++||+|++|||.+...+ +..++.+.++..+|.+++|+|.|++
T Consensus        27 ~~gsPA~----~AGl~~GD~I~~Ing~~v~~~-~~~~~~~~l~g~~g~~v~l~i~R~g   79 (92)
T d1fc6a3          27 APGGPAE----KAGARAGDVIVTVDGTAVKGM-SLYDVSDLLQGEADSQVEVVLHAPG   79 (92)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTC-CHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             cCCCChh----HHhhHcCCcceecCceEcCCC-CHHHHHHHhhCCCCCEEEEEEEECC
Confidence            4799999    999999999999999886654 5778889999888999999999988

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.40  E-value=4.3e-13  Score=81.73  Aligned_cols=62  Identities=15%  Similarity=0.167  Sum_probs=51.3

Q ss_pred             CCCCCCCccccccccCC-CCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEEEEe
Q psy12583          6 VDSEGYPRQDVDVYQGL-VKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRLVLR   74 (96)
Q Consensus         6 ~~~~~~pa~~~~~~aGL-k~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l~v~   74 (96)
                      -..++|||+    +||| |+||+|++|||.++   ..|.++.++++..+|.++.|+|.|.+.+.+++.|+
T Consensus        26 ~~~~~sPa~----~aGl~k~GD~I~~IdG~~v---~~~~~~~~~l~g~~G~~V~L~i~R~g~~~r~~~V~   88 (91)
T d1k32a1          26 NEGEKSPIF----EYGIDPTGYLIEDIDGETV---GAGSNIYRVLSEKAGTSARIRLSGKGGDKRDLMID   88 (91)
T ss_dssp             STTCBCGGG----GGTCCCTTCEEEEETTEEC---BTTBCHHHHHHTTTTSEEEEEEECSSSCEEEEEEE
T ss_pred             CcccCChhH----hcCCCCCCCEEEEECCEee---cCcceeEEEEecCCCCEEEEEEEeCCCCEEEEEEE
Confidence            346779999    9999 89999999999775   55667789999999999999999976355666554

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=99.40  E-value=2.7e-13  Score=81.82  Aligned_cols=59  Identities=12%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLR   74 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~   74 (96)
                      .++|||+    +|||++||.|++|||.+   +.++.++.++++. .++.+++++|+|+| +..++++.
T Consensus        27 ~~~s~~~----~aGl~~GDiI~~ing~~---v~~~~~~~~~~~~~~~~~~~~l~v~R~g-~~~~i~v~   86 (87)
T d2i6va1          27 KDPVLFE----SIGLQDGDMAVALNGLD---LTDPNVMNTLFQSMNEMTEMSLTVERDG-QQHDVYIQ   86 (87)
T ss_dssp             SCHHHHH----HTTCCTTCEEEEETTEE---TTCHHHHHHHHHTGGGCSEEEEEEEETT-EEEEEEEE
T ss_pred             CCCCHHH----HCCCCCCCEEEEECCEE---eecHHHHHHHHHhhccccccEEEEEECC-EEEEEEEE
Confidence            4578999    99999999999999966   5788888888876 46889999999999 98888764

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=4.2e-13  Score=80.87  Aligned_cols=55  Identities=18%  Similarity=0.349  Sum_probs=47.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRL   71 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l   71 (96)
                      .+||||+    +|||++||.|++|||++   +.+++++.++++. .+..+.++|+|++ +.+.+
T Consensus        33 ~~~spA~----~aGl~~GDvI~~ing~~---v~~~~~~~~~l~~-~~~~v~l~v~R~~-~~~~l   87 (88)
T d1ky9b2          33 KTGTPAA----QIGLKKGDVIIGANQQA---VKNIAELRKVLDS-KPSVLALNIQRGD-STIYL   87 (88)
T ss_dssp             CSSCTTG----GGTCCSSCEEEEETTEE---CSSHHHHHHHTTT-CCSCCCEEEESSS-CEEEE
T ss_pred             CCCCHHH----HcCCCCCcEEEEECCEE---cCCHHHHHHHHHh-CCCEEEEEEEECC-EEEEE
Confidence            4789999    99999999999999976   5788999999876 4568999999999 77654

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=2.6e-13  Score=82.61  Aligned_cols=58  Identities=16%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhC-CCceEEEEEEeCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAG-VNTDIPITVLRNEGTRQRLVL   73 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~-~g~~i~l~V~R~g~~~~~l~v   73 (96)
                      .+++||+    +|||++||.|++|||.+   +.++.++.+++... +|.++.++|+|+| +.+++++
T Consensus        35 ~~~spA~----~aGl~~gDvI~~i~g~~---v~~~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v   93 (94)
T d1ky9a1          35 LPNSSAA----KAGIKAGDVITSLNGKP---ISSFAALRAQVGTMPVGSKLTLGLLRDG-KQVNVNL   93 (94)
T ss_dssp             TTCSSST----TTTCCTTCEECBSSSSB---CCSSHHHHHHTTSSBTTCCCEEEEESSS-CEEECCC
T ss_pred             CCChhHH----HhCCCcccEEEEECCEE---eCCHHHHHHHHHhCCCCCEEEEEEEECC-EEEEEEE
Confidence            4889999    99999999999999855   67888888888764 5889999999999 8877754

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=3.2e-13  Score=83.02  Aligned_cols=61  Identities=21%  Similarity=0.289  Sum_probs=47.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHh-CCCceEEEEEEeCCceEEEEEEeec
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRA-GVNTDIPITVLRNEGTRQRLVLRPQ   76 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~-~~g~~i~l~V~R~g~~~~~l~v~p~   76 (96)
                      .++|||+    +|||++||.|++|||.+   +.++.++...+.. .+|.++.++|+|+| +.++++++..
T Consensus        34 ~~~spA~----~aGl~~GDiI~~ing~~---v~~~~~l~~~l~~~~~g~~v~l~v~R~g-~~~~~~v~l~   95 (99)
T d1sota1          34 SPDGPAA----NAGIQVNDLIISVDNKP---AISALETMDQVAEIRPGSVIPVVVMRDD-KQLTLQVTIQ   95 (99)
T ss_dssp             CSSSTTT----SSSCCTTCEECBSSSSB---CCCSHHHHHHHHHSCTTCEEEECC------CCCEEEECE
T ss_pred             cCCCCHH----HcCCCcceEEEEECCEe---cccHHHHHHHHHcCCCCCEEEEEEEECC-EEEEEEEEEe
Confidence            3689999    99999999999999955   6778888887754 57899999999999 8888887764

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.5e-11  Score=71.01  Aligned_cols=52  Identities=10%  Similarity=0.335  Sum_probs=44.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++||++||+|++|||.+...+ +..++.++|+.. +..++|+|.|++
T Consensus        33 ~~gs~A~----~~~L~~GD~Il~VNg~~v~~~-s~~ev~~~i~~~-~~~v~L~V~R~~   84 (85)
T d1rgwa_          33 TPGSKAA----QSQLSQGDLVVAIDGVNTDTM-THLEAQNKIKSA-SYNLSLTLQKSK   84 (85)
T ss_dssp             CTTSHHH----HSSCCCCSBEEEETTEECTTC-CHHHHHHHHTTC-SSCEEEEEESCC
T ss_pred             cCCChHH----hCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCEEEEEEEECC
Confidence            4789999    999999999999999987665 567888899875 568999999986

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.3e-10  Score=69.20  Aligned_cols=51  Identities=18%  Similarity=0.282  Sum_probs=44.3

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+|+||+    ++||++||+|++|||+++..+ +.+++..++++.++..++++|.+
T Consensus        33 ~~gspA~----~aGL~~GD~Il~Vng~~v~~~-~~~~v~~~lk~~~~~~v~l~v~~   83 (85)
T d1w9ea1          33 QANSPAS----LVGLRFGDQVLQINGENCAGW-SSDKAHKVLKQAFGEKITMTIRD   83 (85)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTC-CHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CCCCHHH----HcCCCCccEEEEECCEEeCCC-CHHHHHHHHhcCCCCEEEEEEeC
Confidence            5799999    999999999999999887654 56888999998888899998864

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.6e-10  Score=67.86  Aligned_cols=50  Identities=22%  Similarity=0.383  Sum_probs=42.4

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+|+||+    +|||++||+|++|||.++..+ +..++...+++. +.+++++|.|
T Consensus        26 ~~gspA~----~aGL~~GD~Il~Vng~~v~~~-~~~~v~~~i~~~-~~~v~L~v~R   75 (77)
T d2f5ya1          26 DSGGPAE----RAGLQQLDTVLQLNERPVEHW-KCVELAHEIRSC-PSEIILLVWR   75 (77)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTC-CHHHHHHHHHTC-SSEEEEEEEE
T ss_pred             CCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHCC-CCEEEEEEEE
Confidence            4799999    999999999999999886655 456888888865 4689999988

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.7e-10  Score=69.29  Aligned_cols=51  Identities=22%  Similarity=0.309  Sum_probs=43.6

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+|+||+    ++||++||+|++|||.+..++ +..++..++++ .+..++|+|.|+
T Consensus        47 ~~gg~A~----~~GL~~GD~Il~VNg~~v~~~-~~~~~~~~l~~-~~~~v~l~v~R~   97 (97)
T d1x5qa1          47 SEEGPAA----RAGVRVGDKLLEVNGVALQGA-EHHEAVEALRG-AGTAVQMRVWRE   97 (97)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTC-CHHHHHHHHHS-CCSEEEEEEEEC
T ss_pred             CCCChhH----hhcccCCCEEEEECCEECCCC-CHHHHHHHHhC-CCCEEEEEEEEC
Confidence            4689999    999999999999999987666 46677788876 467999999995

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=4e-10  Score=68.33  Aligned_cols=52  Identities=17%  Similarity=0.235  Sum_probs=44.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++||++||+|++|||+++.++ +..++..+|++. +..++|+|.|..
T Consensus        38 ~~gs~A~----~~gL~~GD~Il~VNg~~v~~~-~~~~~~~~l~~~-~~~v~L~V~R~~   89 (94)
T d1vb7a_          38 TERGKAE----AADLRPGDIIVAINGQSAENM-LHAEAQSKIRQS-ASPLRLQLDRSS   89 (94)
T ss_dssp             CTTSSHH----HHTCCTTCEEEEETTEECTTC-CHHHHHHHHHTC-CSSEEEEEECCC
T ss_pred             cCCChhh----hCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEECC
Confidence            4789999    999999999999999987665 456788888874 578999999965

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=4.7e-10  Score=67.64  Aligned_cols=51  Identities=16%  Similarity=0.290  Sum_probs=43.5

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+|+||+    ++||++||+|++|||.++..+ +..++..+|++ .+..++|+|.|+
T Consensus        40 ~~~g~A~----~~gL~~GD~Il~VNg~~v~~~-t~~~~~~~l~~-~~~~v~L~v~R~   90 (91)
T d1m5za_          40 RPAGPGD----LGGLKPYDRLLQVNHVRTRDF-DCCLVVPLIAE-SGNKLDLVISRN   90 (91)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECTTC-CHHHHHHHHHT-STTEEEEEEEEC
T ss_pred             CCCChhH----hCcCCCCCEEEEECCEECCCC-CHHHHHHHHHC-CCCEEEEEEEEC
Confidence            4688999    999999999999999987665 56788889986 456899999996

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=4.8e-10  Score=68.68  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=42.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+|+||+    +|||++||+|++|||+++.++ +..++.++|++. +..++|+|.|.
T Consensus        51 ~~g~~A~----~aGL~~GD~Il~INg~~v~~~-~h~evv~~ik~~-~~~v~L~V~~~  101 (104)
T d1q3oa_          51 DEGGVAW----RAGLRMGDFLIEVNGQNVVKV-GHRQVVNMIRQG-GNTLMVKVVMV  101 (104)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTC-CHHHHHHHHHHT-TTEEEEEEEEE
T ss_pred             CCCCHHH----HcCCCCCCEEEEEcCeEcCCC-CHHHHHHHHHcC-CCeEEEEEEec
Confidence            3789999    999999999999999887665 446788999875 56799998873

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=4.4e-10  Score=67.80  Aligned_cols=52  Identities=15%  Similarity=0.208  Sum_probs=45.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||++..++ +.+++..+|++. +..++|+|.|.+
T Consensus        39 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-s~~ea~~~l~~~-~~~v~L~v~R~g   91 (92)
T d1t2ma1          39 VKGGAAD----VDGRLAAGDQLLSVDGRSLVGL-SQERAAELMTRT-SSVVTLEVAKQG   91 (92)
T ss_dssp             CTTSHHH----HHTCCCSSEEEEEETTEECTTC-CHHHHHHHHHSC-CSEEEEEEEECC
T ss_pred             cCCChHH----hcCCCCcccEeeeeCCeecCCC-CHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            4789999    999 999999999999987665 577888999875 468999999986

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6.5e-10  Score=66.97  Aligned_cols=52  Identities=17%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||++..++ +.+++.++|++. +..++|+|.|.|
T Consensus        39 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-~~~e~~~~lk~~-~~~v~L~v~Rpg   91 (92)
T d2fe5a1          39 IEGGAAQ----KDGRLQIGDRLLAVNNTNLQDV-RHEEAVASLKNT-SDMVYLKVAKPG   91 (92)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTC-BHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCCCChh----hcCCCCCCCEEEEeCCeecCCC-CHHHHHHHHHcC-CCEEEEEEECCC
Confidence            4889999    999 999999999999987765 677888999975 468999999987

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=8.4e-10  Score=67.08  Aligned_cols=52  Identities=12%  Similarity=0.169  Sum_probs=44.7

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||++..++ +.+++.++|++. +..++|+|.|+.
T Consensus        45 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-s~~~a~~~lk~~-~~~v~L~v~R~~   97 (99)
T d1ozia_          45 IPKGAAE----SDGRIHKGDRVLAVNGVSLEGA-THKQAVETLRNT-GQVVHLLLEKGQ   97 (99)
T ss_dssp             CSSSHHH----HHTCCCTTCEEEEETTEECSSC-CHHHHHHHHHHS-CSEEEEEEECCC
T ss_pred             CCCChHH----hcCCCCccCEEEEECCEEcCCC-CHHHHHHHHHCC-CCeEEEEEEeCC
Confidence            4789999    999 999999999999987665 667888999975 578999999964

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=9.8e-10  Score=66.15  Aligned_cols=52  Identities=15%  Similarity=0.248  Sum_probs=44.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||.+.... +.+++.++|++. +..++|+|.|..
T Consensus        39 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-s~~e~~~~l~~~-~~~v~L~v~R~~   91 (93)
T d1rgra_          39 IPGGAAA----QDGRLRVNDSILFVNEVDVREV-THSAAVEALKEA-GSIVRLYVMRRK   91 (93)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECSSS-CHHHHHHHHHHT-TTEEEEEEECSC
T ss_pred             CCCChHH----hcCCCCcCcEEEEECCEECCCC-CHHHHHHHHHcC-CCEEEEEEEeCC
Confidence            3789999    999 999999999999987664 668888999875 568999999964

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=1.1e-09  Score=66.12  Aligned_cols=50  Identities=18%  Similarity=0.254  Sum_probs=43.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+|+||+    ++| |++||+|++|||++...+ +.+++.++|++. +..++|+|.|
T Consensus        43 ~~gs~A~----~~G~L~~GD~Il~VNg~~v~~~-~~~~~~~ll~~~-~~~v~L~V~R   93 (94)
T d1ihja_          43 VPDSPAH----LCGRLKVGDRILSLNGKDVRNS-TEQAVIDLIKEA-DFKIELEIQT   93 (94)
T ss_dssp             CTTSHHH----HHCSCCTTCEEEEETTEECTTC-CHHHHHHHHHHS-CSEEEEEEEE
T ss_pred             CCCCHHH----HhCCCChhcEEEEECCEECCCC-CHHHHHHHHHcC-CCEEEEEEEe
Confidence            3789999    999 999999999999987665 678888999975 4689999988

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.1e-09  Score=66.17  Aligned_cols=51  Identities=22%  Similarity=0.276  Sum_probs=43.8

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+|+||+    ++| |++||+|++|||++..++ +.+++.++|++.+ ..++|+|.|.
T Consensus        41 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-~~~~~~~~l~~~~-~~v~L~V~R~   92 (94)
T d1wf8a1          41 TEGGAAQ----RDGRIQVNDQIVEVDGISLVGV-TQNFAATVLRNTK-GNVRFVIGRE   92 (94)
T ss_dssp             CTTCHHH----HHCSSCTTCBEEEETTEECBSC-CHHHHHHHHHHCC-SEEEEEEEEE
T ss_pred             CCCChHH----HcCCCCcCCEEEEECCEECCCC-CHHHHHHHHHcCC-CeEEEEEEeC
Confidence            4789999    999 999999999999987765 6778889998765 5799999985

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=1e-09  Score=68.42  Aligned_cols=51  Identities=8%  Similarity=0.217  Sum_probs=43.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+++||+    ++||++||+|++|||.++..+ +.+++.++|+..++..++|+|.+
T Consensus        44 ~~~spA~----~~GL~~GD~Il~INg~~v~~~-~~~ev~~llk~~~~~~v~l~v~~   94 (111)
T d1vaea_          44 DPHCSAS----LAGAKEGDYIVSIQGVDCKWL-TVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             CTTSSHH----HHHCCTTCEEEEETTEECSSC-CHHHHHHHHHHTTTSEECEEEEC
T ss_pred             cCCChHH----hcccCcccEEEEECCEEcCCC-CHHHHHHHHHcCCCCeEEEEEEC
Confidence            4689999    999999999999999887654 55788999998777788887765

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.3e-09  Score=65.98  Aligned_cols=50  Identities=20%  Similarity=0.266  Sum_probs=42.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+|+||+    ++| |++||+|++|||.+..+. +.+++.++|++. +..++|+|+|
T Consensus        44 ~~~s~A~----~~G~L~~GD~Il~VNg~~v~~~-t~~ea~~~lk~~-~~~v~L~V~r   94 (96)
T d2fcfa1          44 LEDSPAG----KNGTLKPGDRIVEVDGMDLRDA-SHEQAVEAIRKA-GNPVVFMVQS   94 (96)
T ss_dssp             CSSSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHTC-CSSEEEEEEC
T ss_pred             CCCCHHH----HcCCCcCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEE
Confidence            4789999    999 999999999999987665 567778888865 5689999987

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=1.6e-09  Score=66.00  Aligned_cols=52  Identities=17%  Similarity=0.273  Sum_probs=44.4

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||.....+ +..++.++|++.+ ..++|+|.|+.
T Consensus        46 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-s~~e~~~ll~~~~-~~v~L~V~r~~   98 (99)
T d1p1da2          46 KKGSVAH----RTGTLELGDKLLAIDNIRLDSC-SMEDAVQILQQCE-DLVKLKIRKDE   98 (99)
T ss_dssp             CSSSHHH----HTSCCCTTCEEEEETTEEGGGC-CHHHHHHHHHHCT-TCEEEEEECCC
T ss_pred             cCCchhh----hcCCCCCCCEEEeeCCEECCCC-CHHHHHHHHHcCC-CeEEEEEEeCC
Confidence            4789999    999 999999999999887655 6778889999875 46999999874

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.5e-09  Score=64.48  Aligned_cols=52  Identities=25%  Similarity=0.367  Sum_probs=43.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++||++||+|++|||.++... +.+++.++|++. +..++|+|.|..
T Consensus        35 ~~g~~A~----~aGl~~GD~Il~VNg~~v~~~-t~~e~~~ll~~~-~~~v~L~v~~~~   86 (91)
T d1g9oa_          35 EPGSPAE----KAGLLAGDRLVEVNGENVEKE-THQQVVSRIRAA-LNAVRLLVVDPE   86 (91)
T ss_dssp             CTTSHHH----HTTCCTTCEEEEETTEECTTC-CHHHHHHHHHTC-SSEEEEEEECCC
T ss_pred             cCCCHHH----HcCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEECCC
Confidence            4789999    999999999999999987654 567888899875 457888888754

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=2.5e-09  Score=64.30  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=43.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+|+||+    ++| |++||+|++|||++...+ +.+++.++|++.. ..++|+|+|-
T Consensus        38 ~~~~~A~----~~G~L~~GD~Il~INg~~v~~~-~~~~~~~~l~~~~-~~v~l~v~~~   89 (90)
T d1qava_          38 FKGLAAD----QTEALFVGDAILSVNGEDLSSA-THDEAVQALKKTG-KEVVLEVKYM   89 (90)
T ss_dssp             CTTSHHH----HTTCCCTTEEEEEETTEECTTC-CHHHHHHHHHTCC-SEEEEEEEEC
T ss_pred             cCCCcee----eCCCCCccCEEEEECCEECCCC-CHHHHHHHHHhCC-CeEEEEEEEe
Confidence            4899999    999 999999999999987766 6778889999875 5799999873

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.2e-09  Score=65.38  Aligned_cols=52  Identities=19%  Similarity=0.276  Sum_probs=44.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++..+ +.+++.++|++. +..++|+|.|..
T Consensus        46 ~~gs~A~----~~G~L~~GD~Il~INg~~v~~~-~~~ev~~~l~~~-~~~v~l~v~R~~   98 (105)
T d1whaa_          46 AEGGAAH----RAGTLQVGDRVLSINGVDVTEA-RHDHAVSLLTAA-SPTIALLLEREA   98 (105)
T ss_dssp             CTTSSHH----HHSSCCTTCEEEEESSCBCTTC-CHHHHHHHHTSC-CSCEEEEEEECC
T ss_pred             cCCCchh----hcCCccCCCEEEEECCEEcCCC-cHHHHHHHHHcC-CCeEEEEEEECC
Confidence            5789999    999 999999999999886654 677888999875 468999999975

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=3.4e-09  Score=67.44  Aligned_cols=53  Identities=17%  Similarity=0.256  Sum_probs=45.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++..+ +.+++.++|+..+ |..|+|+|.|+.
T Consensus        57 ~~gg~A~----~~G~l~~GD~Il~Ing~~v~~~-~~~e~~~llr~~~~g~~v~L~v~R~~  111 (126)
T d1wifa_          57 INKGAAA----SDGILQPGDVLISVGHANVLGY-TLREFLKLLQNITIGTVLQIKAYRGF  111 (126)
T ss_dssp             CTTSSGG----GCSSSCTTCBEEEESSSCCTTC-CHHHHHHHHTSCCSSCEEEEEEESSS
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEEeEec-cHHHHHHHHhCCCCCCEEEEEEEeCC
Confidence            4789999    999 999999999999876554 6778889999754 789999999976

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.5e-09  Score=63.33  Aligned_cols=49  Identities=20%  Similarity=0.266  Sum_probs=41.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVL   62 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~   62 (96)
                      .+|+||+    ++||++||+|++|||++...+ +.+++.++|++. +..++|+|.
T Consensus        31 ~~g~~A~----~~Gl~~GD~Il~INg~~v~~~-t~~~~~~ll~~~-~~~v~l~v~   79 (82)
T d1r6ja_          31 VKDSSAA----RNGLLTEHNICEINGQNVIGL-KDSQIADILSTS-GTVVTITIM   79 (82)
T ss_dssp             CTTSHHH----HHTCCSSEEEEEETTEECTTC-CHHHHHHHHHHS-CSEEEEEEE
T ss_pred             CCCChHH----hcCcCCCCEEEEeCCeEEeeC-CHHHHHHHHHcC-CCEEEEEEE
Confidence            4789999    999999999999999987665 467888999975 467888775

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=3.4e-09  Score=65.21  Aligned_cols=52  Identities=17%  Similarity=0.312  Sum_probs=43.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++||++||+|++|||+++..+ +..++.++|+.. +..++|+|.|.+
T Consensus        37 ~~g~~A~----~~~L~~GD~Il~VNg~~v~~~-~~~e~v~ll~~~-~~~v~l~V~R~~   88 (103)
T d1v5la_          37 TPGSKAA----AANLCPGDVILAIDGFGTESM-THADAQDRIKAA-SYQLCLKIDRAE   88 (103)
T ss_dssp             CTTSTTG----GGTCCTTCBEEEETTEECSSC-CHHHHHHHHTTC-CSEEECEECCCT
T ss_pred             cCCChHH----hCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCEEEEEEEECC
Confidence            4689999    999999999999999987665 456778888864 568999999977

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.7e-09  Score=62.14  Aligned_cols=49  Identities=14%  Similarity=0.165  Sum_probs=40.7

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVL   62 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~   62 (96)
                      .+|+||+    ++||++||+|++|||.+...+ +.+++.++|+... ..+.|++.
T Consensus        28 ~~gs~A~----~~gL~~GD~Il~INg~~v~~~-~~~~~~~ll~~~~-~~v~l~vi   76 (79)
T d1y7na1          28 MRGGIAE----RGGVRVGHRIIEINGQSVVAT-PHEKIVHILSNAV-GEIHMKTM   76 (79)
T ss_dssp             CTTSHHH----HHTCCSSCEEEEETTEECTTS-CHHHHHHHHHHCC-EEEEEEEE
T ss_pred             cCCCHHH----HCCCCCCCEEEEECCEEeCCC-CHHHHHHHHHcCC-CEEEEEEE
Confidence            4789999    999999999999999987665 5678889999754 56777764

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=3.7e-09  Score=64.98  Aligned_cols=52  Identities=13%  Similarity=0.259  Sum_probs=44.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    +++|++||+|++|||++...+ +..++.++|+.. +..+.|+|.|..
T Consensus        37 ~~g~~a~----~~~L~~GD~Il~INg~~v~~~-t~~eav~li~~~-~~~v~L~v~R~~   88 (103)
T d1wf7a_          37 KDGGKAS----QAHVRIGDVVLSIDGISAQGM-THLEAQNKIKAC-TGSLNMTLQRAS   88 (103)
T ss_dssp             CTTCHHH----HTTCCTTCBEEEETTEECSSC-CHHHHHHHHHHC-SSEEEEEECCCS
T ss_pred             CCCChHH----HCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEECC
Confidence            4688999    899999999999999987665 566778888875 568999999977

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=4.1e-09  Score=64.73  Aligned_cols=50  Identities=12%  Similarity=0.173  Sum_probs=42.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+++||+    ++||++||+|++|||++...+ +.+++.++|+...  .+.++|+|.
T Consensus        49 ~~~s~A~----~~GL~~GD~Il~VNg~~v~~~-~~~ev~~llk~~~--~v~l~V~~~   98 (104)
T d1wi2a_          49 IPDSDAH----RAGLQEGDQVLAVNDVDFQDI-EHSKAVEILKTAR--EISMRVRFF   98 (104)
T ss_dssp             CTTSHHH----HHTCCTTCEEEEETTEECSSC-CHHHHHHHHHHSS--SEEEEEECC
T ss_pred             CCCChhH----hcccccCCEEEEECCEECCCC-CHHHHHHHHhcCC--eEEEEEEEC
Confidence            5789999    999999999999999987766 6778889998753  578888764

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=6.3e-09  Score=62.92  Aligned_cols=52  Identities=12%  Similarity=0.207  Sum_probs=44.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||++...+ +.+++..+|++. +..+.|+|.|..
T Consensus        36 ~~g~~A~----~~g~L~~GD~Il~INg~~v~~~-~~~ev~~~l~~~-~~~v~l~v~r~~   88 (95)
T d1n7ea_          36 TKGGLAE----RTGAIHIGDRILAINSSSLKGK-PLSEAIHLLQMA-GETVTLKIKKQT   88 (95)
T ss_dssp             CTTSHHH----HHTCCCTTCEEEEETTEECTTC-CHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCCChHH----hcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEECC
Confidence            4789999    999 999999999999987665 567888899875 568999999976

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=7e-09  Score=64.33  Aligned_cols=52  Identities=19%  Similarity=0.280  Sum_probs=43.6

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||+++..+ +.+++.++|++.. ..++|+|.|..
T Consensus        51 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-~~~ev~~ll~~~~-~~v~l~V~r~~  103 (114)
T d1uewa_          51 IDGSPAD----RCAKLKVGDRILAVNGQSIINM-PHADIVKLIKDAG-LSVTLRIIPQE  103 (114)
T ss_dssp             CTTCTTG----GGSSCCTTCBEEEETTBCTTTS-CHHHHHHHHHHTT-TEEEEEECCCS
T ss_pred             CCCCHHH----hhccCCcCcEEeEeCCcccCCC-cHHHHHHHHHcCC-CeEEEEEEeCC
Confidence            4789999    998 999999999999886655 5678899998754 57999999866

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=8.1e-09  Score=63.62  Aligned_cols=52  Identities=21%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||++...+ +.+++.++|++.+ ..+.|+|.|..
T Consensus        49 ~~gs~A~----~~G~L~~GD~Il~VNg~~v~~~-t~~eav~~lk~~~-~~v~l~v~r~~  101 (107)
T d1uhpa_          49 VDSGPAA----KEGGLQIHDRIIEVNGRDLSRA-THDQAVEAFKTAK-EPIVVQVLRRT  101 (107)
T ss_dssp             CSSSHHH----HTTCCCSSCEEEEETTEECTTC-CHHHHHHHHHHCC-SSEEEEEEECC
T ss_pred             CCCCHHH----HhCCCcceeEEeEECCEECCCC-CHHHHHHHHHhCC-CcEEEEEEECC
Confidence            5789999    999 999999999999997765 5678889998754 57889988854

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=7.6e-09  Score=63.91  Aligned_cols=52  Identities=21%  Similarity=0.301  Sum_probs=44.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||++...+ +..++.++|++. +..++|+|.|..
T Consensus        44 ~~gg~A~----~~G~L~~GD~Il~INg~~v~~~-~~~ev~~llk~~-~~~v~l~v~r~~   96 (110)
T d1um1a_          44 LPGSPAA----ADGRLSLGDRILEVNGSSLLGL-GYLRAVDLIRHG-GKKMRFLVAKSD   96 (110)
T ss_dssp             CTTSHHH----HHSCCCTTCEEEEESSCBCSSC-CHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCCCHHH----HcCCCccCCEEEEECCEECCCC-CHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            5799999    999 999999999999886654 567888999876 468999999865

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=4.5e-09  Score=63.76  Aligned_cols=51  Identities=16%  Similarity=0.193  Sum_probs=42.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhC---CCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAG---VNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~---~g~~i~l~V~R   63 (96)
                      .+|+||+    ++| |++||+|++|||++..+. +.+++.++|++.   .+.++++++.|
T Consensus        42 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-~~~ea~~~l~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          42 IPGGDCY----KDGRLKPGDQLVSINKESMIGV-SFEEAKSIITRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             CTTSHHH----HHCSCCTTCBEEEETTSCCTTC-CHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred             eCCCccc----cCCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhccCCCCCeEEEEEEC
Confidence            4789999    999 999999999999876554 677888999875   35678888876

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.8e-09  Score=65.38  Aligned_cols=52  Identities=17%  Similarity=0.225  Sum_probs=44.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||+++.++ +.+++.++|++.. ..++|+|.|.-
T Consensus        57 ~~gs~A~----~~G~L~~GD~Il~INg~~v~~~-s~~e~~~~i~~~~-~~v~l~v~r~~  109 (117)
T d1ujda_          57 LPGGSAE----QTGKLMEGMQVLEWNGIPLTSK-TYEEVQSIISQQS-GEAEICVRLDL  109 (117)
T ss_dssp             CTTCHHH----HHSSCCTTCEEEEETTEECTTC-CHHHHHHHHSCCS-SCEEEEEESSC
T ss_pred             CCCCHHH----HcCCCCCCCEEEEECCEECCCC-cHHHHHHHHHcCC-CeEEEEEEECC
Confidence            4789999    999 999999999999987665 6778889998754 57999999865

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8.6e-09  Score=65.38  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=45.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||+....+ +.+++.++|+..+...+.|+|.|..
T Consensus        65 ~~gg~A~----~~G~L~~GD~Il~VNg~~~~~~-t~~eav~~l~~~~~~~v~l~v~r~~  118 (130)
T d1i16a_          65 FKGAASE----QSETVQPGDEILQLGGTAMQGL-TRFEAWNIIKALPDGPVTIVIRRKS  118 (130)
T ss_dssp             CSSCCCS----SSCCCCTTCCEEECSSCBGGGS-CHHHHHHHHHTSCSSEEEEEEEEES
T ss_pred             CCCChHH----hcCCcccCceeeeECCeecCCC-cHHHHHHHHHcCCCCeEEEEEEcCC
Confidence            4899999    999 999999999999876554 6778889999876668999999854

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=7.8e-09  Score=63.36  Aligned_cols=53  Identities=15%  Similarity=0.122  Sum_probs=43.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++..+ +.+++.++|+..+ +..++|+|.|..
T Consensus        42 ~~g~~A~----~~G~L~~GD~Il~VNg~~v~~~-t~~e~~~~l~~~~~~~~v~l~v~r~~   96 (103)
T d1uepa_          42 IAMGSAD----RDGRLHPGDELVYVDGIPVAGK-THRYVIDLMHHAARNGQVNLTVRRKV   96 (103)
T ss_dssp             CTTSTTG----GGTCCCTTCEEEEETTEECTTS-CHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCChHH----HcCCCCcCCEEEEECCEECCCC-CHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            4789999    999 999999999999987665 6778889998754 347889998853

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.2e-08  Score=64.43  Aligned_cols=53  Identities=11%  Similarity=0.191  Sum_probs=44.8

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||+++..+ +..++.++|+..+ +..+.|+|.|..
T Consensus        52 ~~gg~A~----~~g~L~~GD~Il~INg~~v~~~-t~~eav~~l~~~~~g~~v~L~v~R~~  106 (123)
T d1ueqa_          52 IPDGPAA----QDGKMETGDVIVYINEVCVLGH-THADVVKLFQSVPIGQSVNLVLCRGY  106 (123)
T ss_dssp             CTTSHHH----HTSCCCTTCEEEEETTEECTTS-CHHHHHHHHHTSCTTCEEEEEEEESC
T ss_pred             CCCCHHH----HcCCCeeCCEEEEECCEECCCC-CHHHHHHHHHcCCCCCEEEEEEEcCC
Confidence            4688999    998 999999999999887654 5678889999764 678999999954

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.2e-08  Score=64.88  Aligned_cols=51  Identities=20%  Similarity=0.182  Sum_probs=43.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++||++||+|++|||+++..+ +..++.++|+..  ..+.++|.|.+
T Consensus        54 ~~g~~A~----~~gL~~GD~Il~INg~~v~~~-s~~evv~~lr~~--~~v~l~v~~~~  104 (128)
T d1uf1a_          54 DPGSEAE----GSGLKVGDQILEVNGRSFLNI-LHDEAVRLLKSS--RHLILTVKDVG  104 (128)
T ss_dssp             CTTCHHH----HHTCCTTCEEEEETTEECSSC-CHHHHHHHHTTC--SEEEEEEECCS
T ss_pred             CCCChHH----hcCCCCCCEEEEECCEECCCC-CHHHHHHHHhcC--CcEEEEEEECC
Confidence            4789999    999999999999999987665 567888999864  47889998876

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=1.5e-08  Score=62.40  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=40.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCc-eEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNT-DIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~-~i~l~V~R   63 (96)
                      .+|+||+    ++| |++||+|++|||++...+ +.+++.++|+..++. .+.+.+.+
T Consensus        34 ~~ggpA~----~~G~L~~GD~Il~INg~~v~~~-s~~e~~~~l~~~~~~~~~~l~~~~   86 (112)
T d1qaua_          34 IRGGAAE----QSGLIQAGDIILAVNDRPLVDL-SYDSALEVLRGIASETHVVLILRG   86 (112)
T ss_dssp             CTTSHHH----HHTCCCTTCEEEEETTEECTTS-CHHHHHHHHHHSCSSSEEEEEEEC
T ss_pred             cCCCHHH----HhhhcccccEeEEECCcCccCC-CHHHHHHHHHcCCCCcEEEEEEeC
Confidence            4789999    999 999999999999987665 567888999987653 45454433

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=1.4e-08  Score=62.21  Aligned_cols=51  Identities=16%  Similarity=0.104  Sum_probs=42.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+     +||++||+|++|||++...+ +..++.++|++. +..+.++|.|.+
T Consensus        47 ~~gs~A~-----~~L~~GD~Il~INg~~v~~~-~~~ev~~ll~~~-~~~v~l~V~R~~   97 (104)
T d2csja1          47 LPGGPAD-----GLLQENDRVVMVNGTPMEDV-LHSFAVQQLRKS-GKIAAIVVKRPR   97 (104)
T ss_dssp             CTTSSHH-----HHBCTTCEEEEESSCBCBTC-CHHHHHHHHHHS-CSEEEEEEEEEE
T ss_pred             CCCChhh-----cCCCCCCEEEEECCEECCCC-CHHHHHHHHHcC-CCEEEEEEEeCC
Confidence            4788987     68999999999999886655 567888999976 468999999965

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.8e-08  Score=60.32  Aligned_cols=50  Identities=14%  Similarity=0.142  Sum_probs=42.2

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+|+||+    ++ |++||+|++|||++..++ +..+..++|++.+ ..++|.|.|.
T Consensus        51 ~~gs~A~----~~-L~~GD~Il~VNg~~v~~~-t~~eav~~l~~~~-~~v~L~V~R~  100 (103)
T d2h3la1          51 QPEGPAS----KL-LQPGDKIIQANGYSFINI-EHGQAVSLLKTFQ-NTVELIIVRE  100 (103)
T ss_dssp             CTTSTTT----TT-CCTTCEEEEETTEECSSC-CHHHHHHHHHHCC-SEEEEEEEEE
T ss_pred             CCCChHH----hc-cCCCCEEEEECCEECCCC-CHHHHHHHHHhCC-CeEEEEEEEE
Confidence            4789999    76 999999999999987765 5677888998864 5899999985

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=9.7e-09  Score=61.27  Aligned_cols=52  Identities=21%  Similarity=0.227  Sum_probs=42.4

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||.+...+ +..++.+++++.+ ..++|+|...-
T Consensus        33 ~~gg~A~----~~g~l~~GD~Il~INg~~v~~~-~~~~~~~ll~~~~-~~v~L~i~p~~   85 (88)
T d1kwaa_          33 MHGGMIH----RQGTLHVGDEIREINGISVANQ-TVEQLQKMLREMR-GSITFKIVPSY   85 (88)
T ss_dssp             CTTSHHH----HHTCCCTTCEEEEETTEEGGGS-CHHHHHHHHHHCC-EEEEEEEECCC
T ss_pred             CCCCHHH----HcCCCccCcEEEEECCEECCCC-CHHHHHHHHHcCC-CcEEEEEEeCC
Confidence            4799999    999 999999999999887665 5678889998764 46888876543

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=1.7e-08  Score=61.86  Aligned_cols=52  Identities=23%  Similarity=0.302  Sum_probs=44.3

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||++.... +.+++.++|++. +..++|+|.|..
T Consensus        41 ~~gs~A~----~~G~l~~GD~Il~INg~~v~~~-~~~ev~~~l~~~-~~~v~L~v~~~~   93 (102)
T d1tp5a1          41 LAGGPAD----LSGELRKGDQILSVNGVDLRNA-SHEQAAIALKNA-GQTVTIIAQYKP   93 (102)
T ss_dssp             CTTSHHH----HHSCCCTTEEEEEETTEECTTC-CHHHHHHHHHTS-CSEEEEEEEECH
T ss_pred             cCCchHH----HcCCCcccCEEEEECCeEcCCC-CHHHHHHHHHcC-CCeEEEEEEECC
Confidence            4789999    999 999999999999987664 678999999865 568999998854

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.67  E-value=5.9e-09  Score=62.79  Aligned_cols=52  Identities=27%  Similarity=0.309  Sum_probs=42.0

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC--CceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV--NTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~--g~~i~l~V~R~   64 (96)
                      .+|+||+    +.| |++||+|++|||++...+ +.++..++++...  ..++.|+|.|.
T Consensus        37 ~~gg~A~----~~G~L~~GD~Il~VNg~~l~~~-s~~eav~llk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          37 MKGGAVA----ADGRIEPGDMLLQVNDINFENM-SNDDAVRVLRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             BTTSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCCCcHH----HcCCCCCccEEEEECCEECCCC-CHHHHHHHHHhccCCCCcEEEEEEeC
Confidence            4799999    999 999999999999987665 5677778887532  23789999884

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.67  E-value=2.4e-08  Score=60.67  Aligned_cols=50  Identities=22%  Similarity=0.300  Sum_probs=41.9

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+|+||+    ++| |++||+|++|||.+...+ +.+++.++|+... ..++|+|..
T Consensus        46 ~~gg~A~----~~G~l~~GD~Il~VNg~~v~~~-~~~~~~~~l~~~~-~~v~l~v~p   96 (98)
T d1rzxa_          46 VPGGLAE----STGLLAVNDEVIEVNGIEVAGK-TLDQVTDMMVANS-SNLIITVKP   96 (98)
T ss_dssp             CTTCHHH----HHTCCCTTCEEEEETTEECTTC-CHHHHHHHHHHTC-TEEEEEEEC
T ss_pred             CCCChHH----hcCcCCCCcEEeeECCEECCCC-CHHHHHHHHHcCC-CeEEEEEEe
Confidence            4789999    999 999999999999987655 6788999999764 578888764

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.8e-08  Score=62.26  Aligned_cols=51  Identities=18%  Similarity=0.236  Sum_probs=42.6

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R   63 (96)
                      .+|+||+    ++| |++||+|++|||.+..+. +.+++.++|++.. +..++|.|.|
T Consensus        55 ~~gg~A~----~~g~L~~GD~Il~VNg~~~~~~-t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          55 KKGSLAD----VVGHLRAGDEVLEWNGKPLPGA-TNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             CTTSHHH----HTSCCCTTCEEEEESSCBCTTS-CHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             CCCCchh----hcCCCCcCCEEEEECCEECCCC-CHHHHHHHHHhCCCCCEEEEEEeC
Confidence            4789999    998 999999999999886654 6788889998753 4579999887

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.4e-08  Score=62.28  Aligned_cols=52  Identities=15%  Similarity=0.291  Sum_probs=44.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||++...+ +..++.++|+.. +..++|+|.|..
T Consensus        44 ~~gg~A~----~~g~L~~GD~Il~INg~~v~~~-s~~ev~~~l~~~-~~~v~l~v~R~~   96 (103)
T d1wfva_          44 AEDGPAI----RNGRMRVGDQIIEINGESTRDM-THARAIELIKSG-GRRVRLLLKRGT   96 (103)
T ss_dssp             CTTSHHH----HHCSSCTTCEEEEETTEECSSC-CHHHHHHHHHHH-CSEECEEEECTT
T ss_pred             cCCChHH----hcCCCCCCCEEEEECCEECCCC-cHHHHHHHHHcC-CCEEEEEEEECC
Confidence            3788999    899 999999999999987665 577888999875 578999999965

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.1e-08  Score=59.86  Aligned_cols=53  Identities=13%  Similarity=0.209  Sum_probs=41.3

Q ss_pred             CCCCCcccccccc--CCCCCCEEEEECCeecCCcccHHHHHHHHHhC---CCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQ--GLVKDDIILEFGPINSSNFKSLQDIASTVRAG---VNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~a--GLk~GD~Il~vng~~~~~~~~~~di~~~i~~~---~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++  ||++||+|++|||++...+ +..++.++|+..   ....+.++|.|+.
T Consensus        42 ~~g~~A~----~~~g~L~~GD~Il~VNg~~v~~~-~~~e~~~ll~~~~~~~~~~v~L~vrp~~   99 (106)
T d2cs5a1          42 APGTPAD----LCVPRLNEGDQVVLINGRDIAEH-THDQVVLFIKASCERHSGELMLLVRPNA   99 (106)
T ss_dssp             CSSSTTT----SSSSCCCTTCEEEEETTBCTTSS-CHHHHHHHHHHHHHCCSSCEEEEEECCC
T ss_pred             cCCCcch----hccCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCCCcEEEEEECCCC
Confidence            4789998    87  8999999999999886554 567888888753   3346788877654

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3e-08  Score=58.88  Aligned_cols=49  Identities=18%  Similarity=0.294  Sum_probs=40.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCC-ceEEEEE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVN-TDIPITV   61 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g-~~i~l~V   61 (96)
                      .+|+||+    ++| |++||+|++|||++..++ +.+++.++|++.+. ..++|+|
T Consensus        34 ~~gg~A~----~~G~l~~GD~Il~VNg~~v~~~-s~~e~~~~l~~~~~~~~v~L~V   84 (85)
T d1x45a1          34 MHGGPAE----KSGKLNIGDQIMSINGTSLVGL-PLSTCQSIIKGLKNQSRVKLNI   84 (85)
T ss_dssp             CTTCHHH----HHCSCCTTCEEEEETTEECTTC-CHHHHHHHHHTTTTCSEEEEEE
T ss_pred             CCCCHHH----HcCCCCcCCEEEEECCEECCCC-CHHHHHHHHHcCCCCCEEEEEE
Confidence            3799999    999 999999999999987665 67888999997654 3566665

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.6e-08  Score=59.35  Aligned_cols=49  Identities=12%  Similarity=0.169  Sum_probs=40.7

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVL   62 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~   62 (96)
                      .+++||+    ++| |++||+|++|||++.... +.+++.++|++.+ ..++|+|.
T Consensus        38 ~~~g~A~----~~g~l~~GD~Il~INg~~v~~~-~~~~v~~~l~~~~-~~v~L~Vl   87 (88)
T d2fnea1          38 FAKGAAS----EDGRLKRGDQIIAVNGQSLEGV-THEEAVAILKRTK-GTVTLMVL   87 (88)
T ss_dssp             CTTSHHH----HHCCCCTTCEEEEETTEECTTC-CHHHHHHHHHHCC-SSEEEEEE
T ss_pred             cCCChHH----HhCCCcCCcEEEEECCEECCCC-CHHHHHHHHHcCC-CcEEEEEE
Confidence            3789999    888 999999999999987665 5678889999864 57888875

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.3e-08  Score=63.69  Aligned_cols=57  Identities=25%  Similarity=0.228  Sum_probs=45.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCCceEEEE
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNEGTRQRL   71 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g~~~~~l   71 (96)
                      .+|+||+    ++||++||+|++|||+++..+ +..++..+++.. +..++|++.|+. ...++
T Consensus        50 ~~gs~A~----~~gL~~GD~Il~INg~~v~~~-~~~~~~~~l~~~-~~~v~l~v~~~p-~~~~~  106 (117)
T d1uita_          50 TVGSIAH----QAGLEYGDQLLEFNGINLRSA-TEQQARLIIGQQ-CDTITILAQYNP-HVHQL  106 (117)
T ss_dssp             CTTSHHH----HHTCCTTCEECEETTEETTTC-CHHHHHHHTTSC-CSEEEEEECCCS-CCCCC
T ss_pred             ecCChHH----hCCCCCCCEeeeECCcccCCC-CHHHHHHHHHCC-CCeEEEEEEECC-cceee
Confidence            4689999    999999999999999987664 567788888764 678999998877 54443

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=3.5e-09  Score=65.73  Aligned_cols=52  Identities=13%  Similarity=0.066  Sum_probs=43.4

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++..+ +.+++.++|++. +..++|+|.|..
T Consensus        52 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-t~~ea~~~lk~~-~~~v~L~V~r~~  104 (111)
T d1ujua_          52 SPTGAAG----RDGRLRVGLRLLEVNQQSLLGL-THGEAVQLLRSV-GDTLTVLVCDGF  104 (111)
T ss_dssp             CTTSHHH----HHSSCCTTCBCCBBSSCBCTTS-CHHHHHHHHSSC-SSEEEECCCCCC
T ss_pred             CCCChHH----HcCCCccceeeeeeCCcccCCC-CHHHHHHHHHcC-CCeEEEEEEECC
Confidence            4789999    999 999999999999887665 567888888864 568999998865

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=7.8e-08  Score=58.04  Aligned_cols=50  Identities=18%  Similarity=0.341  Sum_probs=41.5

Q ss_pred             CCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeCC
Q psy12583         11 YPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRNE   65 (96)
Q Consensus        11 ~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~g   65 (96)
                      .|+.    .+||++||+|++|||+++..+ +.+++.++|++.+ +..++|+|.|..
T Consensus        41 ~~~~----~~~L~~GD~Il~VNg~~v~~~-t~~evv~~lk~~~~g~~v~l~v~R~~   91 (96)
T d1ujva_          41 DIQG----CPGLCEGDLIVEINQQNVQNL-SHTEVVDILKDCPIGSETSLIIHRGS   91 (96)
T ss_dssp             CGGG----STTCCSSCEEEEETTEECSSC-CHHHHHHHHHHSCTTSEEEEEEECCS
T ss_pred             Cccc----ccCCCCCCEEEEECCEECCCC-CHHHHHHHHHcCCCCCEEEEEEEECC
Confidence            4666    689999999999999987665 6788889999754 689999999954

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=9.8e-09  Score=62.80  Aligned_cols=51  Identities=14%  Similarity=0.216  Sum_probs=41.9

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++||++||+|++|||+++..+ +..++.++|+...  .+.++|.|.+
T Consensus        43 ~~gg~A~----~~gL~~GD~Il~ING~~v~~~-~~~~v~~ll~~~~--~~~l~V~~~~   93 (101)
T d1ueza_          43 EPGSLAE----KEGLRVGDQILRVNDKSLARV-THAEAVKALKGSK--KLVLSVYSAG   93 (101)
T ss_dssp             CTTSHHH----HHTCCSSCCEEEETTEECSSC-CHHHHHHHSSSSS--SCCEEECCCC
T ss_pred             CCCChHH----hcCCCCCcEEEEECCEECCCC-CHHHHHHHHhcCC--CEEEEEEECC
Confidence            3689999    999999999999999987776 5678889998753  4667777766

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.6e-08  Score=62.78  Aligned_cols=51  Identities=14%  Similarity=0.264  Sum_probs=42.4

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||.+   +.++.+...+++...+..+.+.+.|..
T Consensus        56 ~~gg~A~----~~g~L~~GD~Il~INg~~---v~~~~~~~~~l~~~~~~~v~l~v~r~~  107 (124)
T d1wh1a_          56 DPNSIAA----KDGRIREGDRIIQINGIE---VQNREEAVALLTSEENKNFSLLIARPE  107 (124)
T ss_dssp             CSSSHHH----HTCCCCTTCEEEEESSCB---CCSHHHHHHHHTCSSCCSCCEEEEECS
T ss_pred             CCCChhh----hhcccCCCCEEEEECCEE---CCCHHHHHHHHhhCCCCcEEEEEEeCC
Confidence            4789999    888 99999999999966   456778788888766778889988865

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.4e-08  Score=61.61  Aligned_cols=52  Identities=15%  Similarity=0.162  Sum_probs=44.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~g   65 (96)
                      .+++||+    ++| |++||+|++|||+++..+ ..+++.++|++. +..++|+|.|..
T Consensus        50 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-~~~~v~~~l~~~-~~~v~l~v~~~~  102 (117)
T d1v62a_          50 KPASVVD----RSGALHPGDHILSIDGTSMEHC-SLLEATKLLASI-SEKVRLEILPVP  102 (117)
T ss_dssp             CTTSHHH----HHTCCCTTCBEEEETTEETTSC-CHHHHHHHHHSC-SSEEEEEECCBT
T ss_pred             CCCCHHH----HcCCCChhheeeeECCEecCCC-CHHHHHHHHHcC-CCcEEEEEEECC
Confidence            5789999    988 999999999999987665 678889999974 568899988865

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=4.8e-08  Score=61.26  Aligned_cols=53  Identities=19%  Similarity=0.253  Sum_probs=43.5

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhC---CCceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAG---VNTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~---~g~~i~l~V~R~g   65 (96)
                      .+|+||+    +.| |++||+|++|||.+...+ +..++.++|++.   .+..|+++|.|..
T Consensus        51 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-s~~e~~~~l~~~~~~~~~~V~L~v~r~p  107 (118)
T d1v6ba_          51 YEGGAAE----RHGGVVKGDEIMAINGKIVTDY-TLAEAEAALQKAWNQGGDWIDLVVAVCP  107 (118)
T ss_dssp             CTTSHHH----HHCSSCTTCEEEEESSCBCTTC-BHHHHHHHHHHHHHHTCSEEEEEEECCC
T ss_pred             CCCChHH----hcCCCCCCCEEeeECCEECCCC-cHHHHHHHHHhcccCCCCEEEEEEEeCC
Confidence            4789999    999 999999999999887664 567778888853   4568999999854

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=7.4e-08  Score=58.82  Aligned_cols=50  Identities=18%  Similarity=0.306  Sum_probs=40.1

Q ss_pred             CCCCCccccccccCCCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQGLVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aGLk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R~   64 (96)
                      .+|+||+    ++||++||+|++|||++...+. ..++.++|+...  .+.+++.|.
T Consensus        42 ~~gs~A~----~~gL~~GD~Il~VNg~~v~~~~-~~~v~~~lk~~~--~~~l~v~~~   91 (101)
T d1x5na1          42 KPGSLSA----EVGLEIGDQIVEVNGVDFSNLD-HKEAVNVLKSSR--SLTISIVAA   91 (101)
T ss_dssp             CTTSTTT----TTTCCTTCEEEEETTEETTSCC-TTHHHHHHHHCS--SEEEEECSS
T ss_pred             CCCChHH----hCCCCcccEEEEECCEECCCCC-HHHHHHHHhCCC--CEEEEEEEC
Confidence            4789999    9999999999999999877764 678888998764  355665553

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=6.6e-08  Score=58.91  Aligned_cols=49  Identities=14%  Similarity=0.240  Sum_probs=40.7

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEE
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVL   62 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~   62 (96)
                      .+|+||+    ++| |++||+|++|||++...+ +.+++.++|++.++ +++|+|.
T Consensus        49 ~~gs~A~----~~g~l~~GD~Il~VNg~~v~~~-~~~~~~~ll~~~~~-~v~L~v~   98 (100)
T d1va8a1          49 VKGGAAE----KSGLLHEGDEVLEINGIEIRGK-DVNEVFDLLSDMHG-TLTFVLI   98 (100)
T ss_dssp             CTTSHHH----HHTCCCTTCEEEEETTEECTTC-CHHHHHHHHHHCCE-EEEEEEE
T ss_pred             CCCChhh----hhcccCccCEEEEECCEEEcCC-CHHHHHHHHHcCCC-eEEEEEE
Confidence            4789999    999 999999999999987665 57788999998764 6777763

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.2e-08  Score=60.24  Aligned_cols=51  Identities=14%  Similarity=0.135  Sum_probs=39.8

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCCceEEEEEEe
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVNTDIPITVLR   63 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g~~i~l~V~R   63 (96)
                      .+|+||+    ++| |++||+|++|||.....+ +.+++.++|+..++....+.+.|
T Consensus        43 ~~gs~A~----~~g~L~~GD~Il~VNg~~v~~~-~~~ea~~~l~~~~~~~~l~v~~r   94 (107)
T d1x6da1          43 FPNGLAS----QEGTIQKGNEVLSINGKSLKGT-THHDALAILRQAREPRQAVIVTR   94 (107)
T ss_dssp             CSSSHHH----HHTSSCTTCBCCEETTEECSSC-CHHHHHHHHHHTTSSSEEEEEEE
T ss_pred             CCCCHHH----HcCCCCcCCEEEEECCEecCCC-CHHHHHHHHHcCCCCEEEEEEEC
Confidence            4789999    998 999999999999987665 56888899998765444343444

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.9e-08  Score=60.38  Aligned_cols=52  Identities=15%  Similarity=0.249  Sum_probs=41.6

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC-CceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV-NTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~-g~~i~l~V~R~   64 (96)
                      .+|+||+    ++| |++||+|++|||++..++ +.+++.++|++.+ ...+.|+++.|
T Consensus        46 ~~~s~A~----~~G~l~~GD~Il~INg~~v~~~-t~~e~~~~lr~~~~~~~l~l~v~~~   99 (99)
T d1x5ra1          46 EPDSPAE----RCGLLQVGDRVLSINGIATEDG-TMEEANQLLRDAALAHKVVLEVEFD   99 (99)
T ss_dssp             CTTSHHH----HTSSCCTTCBCSEETTEESTTS-BHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             CCCChHH----HcCCCCCCCEEEEECCEECCCC-CHHHHHHHHHhCCCCCEEEEEEEcC
Confidence            3789999    999 999999999999987654 6788889998653 35777777653

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=6.1e-08  Score=61.45  Aligned_cols=53  Identities=19%  Similarity=0.202  Sum_probs=42.7

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC------CceEEEEEEeCC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV------NTDIPITVLRNE   65 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~------g~~i~l~V~R~g   65 (96)
                      .+|+||+    ++| |++||+|++|||++...+ ..+++.++|++..      ..+++|+|.|..
T Consensus        63 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_          63 IHGGAAF----KDGRLRMNDQLIAVNGETLLGK-SNHEAMETLRRSMSMEGNIRGMIQLVILRRS  122 (127)
T ss_dssp             CSSSSTH----HHHTSCSCCBEEEETTEESTTS-CHHHHHHHHHHHHHHHHHHTCEEEEEEEECS
T ss_pred             CCCCchh----ccCCCCCCCEEEeECCEECCCC-CHHHHHHHHHhcccccCCCCCEEEEEEeeCC
Confidence            4789999    999 999999999999987665 5677778888642      347899998853

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=7.2e-08  Score=60.71  Aligned_cols=52  Identities=12%  Similarity=0.245  Sum_probs=41.1

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCCC-ceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGVN-TDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~g-~~i~l~V~R~   64 (96)
                      .+|+||+    ++| |++||+|++|||++...+ +++++.++|++.+. ..+.|.+.|+
T Consensus        53 ~~gg~A~----~~G~L~~GD~Il~INg~~v~~~-~~~e~~~~lk~~~~~~~l~l~~~~~  106 (122)
T d1v5qa_          53 EADSPAE----RCGVLQIGDRVMAINGIPTEDS-TFEEANQLLRDSSITSKVTLEIEFD  106 (122)
T ss_dssp             CTTSHHH----HSCCCCTTCCEEEETTEESSSS-CHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             CCCCHHH----HhCCCCcCCEEEEECCCcCCCC-CHHHHHHHHHcCCCceEEEEEEecc
Confidence            4789999    998 999999999999987665 57888999987643 3566665554

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.5e-07  Score=56.54  Aligned_cols=52  Identities=17%  Similarity=0.169  Sum_probs=40.2

Q ss_pred             CCCCCccccccccC-CCCCCEEEEECCeecCCcccHHHHHHHHHhCC----CceEEEEEEeC
Q psy12583          8 SEGYPRQDVDVYQG-LVKDDIILEFGPINSSNFKSLQDIASTVRAGV----NTDIPITVLRN   64 (96)
Q Consensus         8 ~~~~pa~~~~~~aG-Lk~GD~Il~vng~~~~~~~~~~di~~~i~~~~----g~~i~l~V~R~   64 (96)
                      .+++||+    ++| |++||+|++|||++...+ +.+++.++|++..    ...+++.+.+.
T Consensus        40 ~~gg~A~----~~G~L~~GD~Il~VNg~~v~~~-s~~e~~~~l~~a~~~~~~~~~~l~v~~~   96 (103)
T d1ufxa_          40 QRGGSAH----NCGQLKVGHVILEVNGLTLRGK-EHREAARIIAEAFKTKDRDYIDFLVTEF   96 (103)
T ss_dssp             CTTSHHH----HHCSSCTTCBCCEETTEECTTC-BHHHHHHHHHHHHHCSSCSEEEEEECCC
T ss_pred             cCCcchh----hcCCCCCCCEEEEECCEECCCC-cHHHHHHHHHHccCCCccceEEEEEeCC
Confidence            5789999    999 999999999999987664 6778888888642    23566666553